BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007013
(621 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225431130|ref|XP_002265926.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
1 [Vitis vinifera]
Length = 625
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/644 (60%), Positives = 469/644 (72%), Gaps = 42/644 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-- 169
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQ
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKR 180
Query: 170 -------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
GRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+K
Sbjct: 181 WETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAK 240
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
HP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL
Sbjct: 241 HPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQ 300
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 342
+KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT
Sbjct: 301 FKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQT 360
Query: 343 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 402
+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S + G + SS
Sbjct: 361 IASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLPSGDFLSS 417
Query: 403 SNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 457
SN +SEG + +I + DS+N + + S I Q S +P V +KKA++SQ Q
Sbjct: 418 SNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKARQSQCSQ 472
Query: 458 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 517
LSLKSFF K SNV V+N+ D SL Q + +S+ + NK + D
Sbjct: 473 LSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTSMGDDESK 521
Query: 518 VHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVA 577
++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+
Sbjct: 522 SSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVS 581
Query: 578 RVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
R+ KKPGP GRRF+VCARAEGPASNPE NCGYFKWA SKS+ +
Sbjct: 582 RLAKKPGPNHGRRFYVCARAEGPASNPETNCGYFKWAASKSRHR 625
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa]
gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/632 (61%), Positives = 459/632 (72%), Gaps = 30/632 (4%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIV+YNVNGLRQRVSQFGSL LL++FDADIICFQETKLRRQEL SDLV+ADGYESFFS
Sbjct: 5 IKIVSYNVNGLRQRVSQFGSLSNLLNTFDADIICFQETKLRRQELTSDLVIADGYESFFS 64
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
CTRT DKGRTGYSGVATFCRVKS FSSTEVALPVAAEEGFTG ++ K EGLE+F K
Sbjct: 65 CTRTKDKGRTGYSGVATFCRVKSAFSSTEVALPVAAEEGFTGFIDRC--KRNEGLEEFEK 122
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
DEL+K+DSEGRCV+TDH HF+LFN+YGPRA +DT RI+FK++FF +LQ GR
Sbjct: 123 DELVKVDSEGRCVVTDHNHFVLFNLYGPRAAHDDTERIEFKMKFFKILQKRWENLLHEGR 182
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 231
R+FVVGDLNIAP A+DRCDA DF KNEFR WFRS+L+ SGG F DVFR+KHP+RREAYT
Sbjct: 183 RVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSILMMSGGLFVDVFRAKHPDRREAYT 242
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
CW S+TGAE FN+G+RIDHILCAGPCLHQ+HDLQ HNF++CHV ECDIL YKRWKPG++
Sbjct: 243 CWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKECDILTQYKRWKPGDS 302
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
RWKGG +LEGSDHAPVYM L E+ +IP+HSTP L++RYLP+I GVQQTLV++LMKR+
Sbjct: 303 TRWKGGRGIKLEGSDHAPVYMSLEEICDIPRHSTPPLSARYLPMIHGVQQTLVTLLMKRQ 362
Query: 352 VAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEF 411
A Q +S S + S+ + CSE++ RS N S CS + +E +
Sbjct: 363 AATQIQS---SRISSSFSDGDATIKACSESIKRSFNECSVSRPSTSPSCSLT-EEFDSAI 418
Query: 412 TKTIENCRD--SANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSN 469
+K EN +D N T S H + +KK +KS+ QLSL+SFF K N
Sbjct: 419 SKRDENSKDLTDENQGCPDTTMILQSQHTKFVPAEGTKKKPRKSRCSQLSLRSFFQKSPN 478
Query: 470 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 529
+ S NS T+ S SQ E S + + D S S +N S
Sbjct: 479 L-----------STGAENSSTNASPSQAEPNTSSYSNGSHAPGDKSSSPRHCQ-LNPSAG 526
Query: 530 SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGR 589
S QD K L++E+NNVALLEW+RIQQLM SIP+CKGHKEPCVAR+VKKPG TFG
Sbjct: 527 SQYQD-KGNDGSLEREKNNVALLEWQRIQQLMRNSIPVCKGHKEPCVARIVKKPGRTFGH 585
Query: 590 RFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
RFFVC+RAEGP SNPEANCGYFKWA SKS++K
Sbjct: 586 RFFVCSRAEGPVSNPEANCGYFKWASSKSQRK 617
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis]
gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis]
Length = 586
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/605 (61%), Positives = 448/605 (74%), Gaps = 36/605 (5%)
Query: 32 IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA 91
I+ + ETKLRRQEL SDLV+ADGYESFFSCTRT++KGRTGYSGVATFCRVKS FSS+EVA
Sbjct: 3 IVTYNETKLRRQELTSDLVIADGYESFFSCTRTNEKGRTGYSGVATFCRVKSAFSSSEVA 62
Query: 92 LPVAAEEGFTGLLETSGSK------IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNV 145
LPV AEEGFTGL++ S + + +GLE+F KDELLKIDSEGRC+ITDHGHF+LFN+
Sbjct: 63 LPVGAEEGFTGLVDCSRNGKHEMPVVAQGLEEFDKDELLKIDSEGRCIITDHGHFVLFNL 122
Query: 146 YGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA 196
YGPRA+S+DT RI FKL F+++LQ GRRIFVVGDLNIAP A+DRCDA PDF
Sbjct: 123 YGPRAESDDTERIHFKLLFYNILQKRWESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFE 182
Query: 197 KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
KNEFRIWFRSMLV+SGG FFDVFRSKHP+RREAYTCWPSNTGAEQFNYGTRIDHILCAGP
Sbjct: 183 KNEFRIWFRSMLVKSGGPFFDVFRSKHPDRREAYTCWPSNTGAEQFNYGTRIDHILCAGP 242
Query: 257 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
CLHQ+HD Q H+FV+CH+ +CDILIDYKRWKPG+ RWKGG T+LEGSDHAPVY L E
Sbjct: 243 CLHQEHDFQVHDFVSCHMKDCDILIDYKRWKPGDTMRWKGGWGTKLEGSDHAPVYTSLVE 302
Query: 317 VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTE 376
+P+IPQH TPSL++RYLP+I G QQTLVSVLMKR+ + Q S G++ ++
Sbjct: 303 IPDIPQHGTPSLSARYLPMIHGFQQTLVSVLMKRQASTQVSSSFSDGNVTIKA------- 355
Query: 377 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 436
C+E++ + L N C+ S + ++S+G + ++C+D ++ + S
Sbjct: 356 -CNESI-KGLYNNCNISDHSASDSSCATKDSDGAILRMEKHCKDFSDQTCSDSTIMLQSR 413
Query: 437 HISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 496
HI+ H + +KKA+KSQ QLSL+SFF + N T N+ D S SQ
Sbjct: 414 HINSMHTEGTKKKARKSQCSQLSLRSFFQRTPN-----------TRSGAENTALDISHSQ 462
Query: 497 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 556
E V S+ ++ D + G+NSS + DQDE +KE+NNVALLEW+R
Sbjct: 463 ENVSNSNSPPSETASQDDHNNTPGHCGLNSSSGTQDQDEINNGP-SEKEKNNVALLEWQR 521
Query: 557 IQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 616
IQQLM+ SIPLCKGHKEPCV+R+VKKPGPT G RF+VCARAEGPASNPEANCGYFKWA S
Sbjct: 522 IQQLMQNSIPLCKGHKEPCVSRIVKKPGPTCGHRFYVCARAEGPASNPEANCGYFKWASS 581
Query: 617 KSKQK 621
KS+QK
Sbjct: 582 KSRQK 586
>gi|449434154|ref|XP_004134861.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
gi|449491354|ref|XP_004158869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cucumis sativus]
Length = 611
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/637 (58%), Positives = 460/637 (72%), Gaps = 42/637 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R++QFGSL KLLDSFDADIIC QETKLRRQEL++DLV+ADGYE+F S
Sbjct: 1 MKIVTYNVNGLRPRITQFGSLAKLLDSFDADIICIQETKLRRQELRADLVIADGYETFVS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSKIM----EG 114
CTRTS+KGRTGYSGVATFCRVKS FSS EVALPV AEEGFTGLLE+S G + M EG
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSAFSSNEVALPVRAEEGFTGLLESSQDGKRTMAAVAEG 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ----- 169
LE+FSK+ELLK+DSEGRC++TDHGHF+LFN+YGPRADS+D+ R+ FKL F++VLQ
Sbjct: 121 LEEFSKEELLKLDSEGRCIVTDHGHFVLFNIYGPRADSDDSDRVLFKLNFYNVLQKRWEH 180
Query: 170 ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
G+R+FVVGDLNIAP ++DRCDAGPDF NEFR W RS++V GG F D+FR+KHP+
Sbjct: 181 LLHMGKRVFVVGDLNIAPTSMDRCDAGPDFENNEFRRWLRSLMVACGGRFIDIFRAKHPD 240
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
RR+AYTCWP +TGAE FNYGTRIDHILCAGPCLH ++L HN V CHV ECDIL YKR
Sbjct: 241 RRDAYTCWPQSTGAEVFNYGTRIDHILCAGPCLHHDNNLPGHNIVACHVMECDILSQYKR 300
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 345
WK GN+ RWK + +LEGSDHAPV L E+P+ PQHSTPSL++RY P I G+QQTLVS
Sbjct: 301 WKDGNSYRWKEERTVKLEGSDHAPVCASLLEIPDTPQHSTPSLSARYNPKIHGLQQTLVS 360
Query: 346 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQ 405
+L+KR+ A+ CK S S+S G+ +CS+ + S +N SG L CS +N
Sbjct: 361 MLLKRQAAEDSAPCKKSN-----SSSLGNLGNCSQGFNGSFDNGDQSGDLPSESCSLTNL 415
Query: 406 ESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF 464
E+E +T E S A A+ T+T H + RK+ ++ Q+SLK+FF
Sbjct: 416 ETEDSLLETGECSGGSYAKEAACKTLTTHEPLHAKALPENPTRKRVRR--CSQMSLKAFF 473
Query: 465 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 524
K S VS+D ++S D+S++ ++ S+ E+P S+ T S S +L
Sbjct: 474 QKNSVVSNDADSSNADSSISKGDTSESNSI---EIPRSN--------TQISDSGRQLEAY 522
Query: 525 NSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 584
Q + + +KE++ VA+LEWRRIQQ+M+ SIPLCKGHKE CVARVVKK G
Sbjct: 523 --------QGQSQINATPEKEKSGVAMLEWRRIQQVMQNSIPLCKGHKETCVARVVKKQG 574
Query: 585 PTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
P GRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 575 PNNGRRFYVCARAEGPASNPEANCGYFKWAASKSRHK 611
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera]
Length = 632
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/629 (59%), Positives = 449/629 (71%), Gaps = 49/629 (7%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHF-------ILFNVYGPRADSEDTVRIQFKLQF 164
EGLE+F+KDELLK+DSEGRC+ITDHGHF +LFN+YGPRADSEDT RIQFK F
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFADYGNWPVLFNIYGPRADSEDTERIQFKHTF 180
Query: 165 FHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF 215
F +LQ GRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG F
Sbjct: 181 FQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPF 240
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
FDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV
Sbjct: 241 FDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVK 300
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 335
ECDIL +KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P
Sbjct: 301 ECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPT 360
Query: 336 IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 395
+ G QQT+ SVLMKR+ A+Q K+ + S S E+ + T CSE + RS + C S +
Sbjct: 361 VHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT---TRSCSEILKRSSQDCCISDLP 417
Query: 396 QGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKA 450
G + SSSN +SEG + +I + DS+N + + S I Q S +P V +KKA
Sbjct: 418 SGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITASIIRQTKS---TPGTV--TKKKA 472
Query: 451 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 510
++SQ QLSLKSFF K SNV V+N+ D SL Q + +S+ + NK
Sbjct: 473 RQSQCSQLSLKSFFQKSSNVKD-----------GVDNAAADASLDQADESKSNQNPNKTS 521
Query: 511 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 570
+ D ++ ++ S + +Q +++N++AL+EW+RIQQLM+ SIPLCKG
Sbjct: 522 MGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKNDIALVEWQRIQQLMQNSIPLCKG 581
Query: 571 HKEPCVARVVKKPGPTFGRRFFVCARAEG 599
H EPCV+R+ KKPGP GRRF+VCARAE
Sbjct: 582 HGEPCVSRLAKKPGPNHGRRFYVCARAEA 610
>gi|356502118|ref|XP_003519868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Glycine max]
Length = 622
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/643 (58%), Positives = 457/643 (71%), Gaps = 43/643 (6%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADIICFQETKLRRQE+ +DLVMADGYESFFS
Sbjct: 1 MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQEVTADLVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKI---MEG 114
CTRTS KGRTGYSGV TFCRVKS FSS EV LP+AAEEGFTGLL +TS K+ ME
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVKSAFSSNEVVLPLAAEEGFTGLLGNSQTSNDKLPFLMED 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ----- 169
LE+FSKDELL +DSEGRC+ITDH HF+LFN+YGPRA +DT RIQFK +F+ +LQ
Sbjct: 121 LEEFSKDELLSLDSEGRCIITDHTHFVLFNLYGPRAGGDDTERIQFKQKFYRILQKRWES 180
Query: 170 ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
GRRIFVVGDLNIAP AIDRCDAGPDF NEFR WF+SML+E+GG F DVFR+KHP+
Sbjct: 181 LLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRKWFKSMLIENGGRFSDVFRAKHPD 240
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
RREAYTCW NTGAE FN+G+RIDHIL AG CLH+ DLQ H+F+ CHV ECDIL YKR
Sbjct: 241 RREAYTCWSQNTGAEVFNFGSRIDHILFAGSCLHELDDLQCHSFIRCHVKECDILTQYKR 300
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 345
KP + RWKGG S +LEGSDHAPV M L E+P++ HSTPSL++RY+P++ G+QQTLVS
Sbjct: 301 CKPESTLRWKGGHSVKLEGSDHAPVLMSLHEIPDVSLHSTPSLSARYVPMVHGIQQTLVS 360
Query: 346 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQ 405
VLMKR+V++ KSC+ + E + T + E V+R+ G S N+
Sbjct: 361 VLMKRQVSELMKSCE----MAQEDIAMDGTCEREEPVNRA-----------GSSTRSPNE 405
Query: 406 -----ESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF-HVDRARKKAKKSQLGQLS 459
+ E + ++ + S + S GS N S +R+ KKA+ Q QLS
Sbjct: 406 CHFPPSQDFEVSSILKPNKLSGGSSQESVSKSGSENKKSTTRQCNRSNKKARNGQWSQLS 465
Query: 460 LKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS-LSQEEVPESHHHSNKIPVTDYSCSV 518
L+SFF K +N+ D +SI + VN+S TD S +Q E + +IP
Sbjct: 466 LRSFFQKSTNL--DKGSSIKEV---VNDSCTDYSNNNQAEPSQPSPRLQEIPTVCAHNGS 520
Query: 519 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 578
+ + +++ C D G +E++NVA LEW+RI+QLM+ SIP+CKGHKEPC+AR
Sbjct: 521 PKQYELDTDTCDPDLAGPNGSS-TKEEKSNVASLEWQRIKQLMQNSIPICKGHKEPCIAR 579
Query: 579 VVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
VVKK GP FGRRF+VCARAEGPASNPEANCGYFKWA SKS+ K
Sbjct: 580 VVKKQGPNFGRRFYVCARAEGPASNPEANCGYFKWASSKSRNK 622
>gi|359476825|ref|XP_003631894.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like isoform
2 [Vitis vinifera]
Length = 596
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/613 (59%), Positives = 442/613 (72%), Gaps = 42/613 (6%)
Query: 32 IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA 91
I+ + ETKL R EL +D+VMADGYESFFSCTRT+ KGR GYSGVATFCRVKS FSSTEVA
Sbjct: 3 IVTYNETKLSRHELTADVVMADGYESFFSCTRTNSKGRVGYSGVATFCRVKSAFSSTEVA 62
Query: 92 LPVAAEEGFTGLLETSGS---------KIMEGLEDFSKDELLKIDSEGRCVITDHGHFIL 142
LP+AAEEGFTGLLE SG EGLE+F+KDELLK+DSEGRC+ITDHGHF+L
Sbjct: 63 LPIAAEEGFTGLLEKSGGFGTGKDEIPVKAEGLEEFAKDELLKVDSEGRCIITDHGHFVL 122
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP 193
FN+YGPRADSEDT RIQFK FF +LQ GRRIFVVGDLNIAPAAIDRCDAGP
Sbjct: 123 FNIYGPRADSEDTERIQFKHTFFQILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGP 182
Query: 194 DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
DF KNEFR WFRSMLVE GG FFDVFR+KHP+RREAYTCW S+TGAE+FNYG+RIDHIL
Sbjct: 183 DFEKNEFRRWFRSMLVECGGPFFDVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILS 242
Query: 254 AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMC 313
+G CLHQ H LQ FVTCHV ECDIL +KRWKPGN PRWKGG S +LEGSDHAPV+M
Sbjct: 243 SGSCLHQDHCLQDRIFVTCHVKECDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMS 302
Query: 314 LGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 373
L ++P++ QHSTPSL++RY+P + G QQT+ SVLMKR+ A+Q K+ + S S E+ +
Sbjct: 303 LMDIPDVAQHSTPSLSARYVPTVHGFQQTIASVLMKRQKAEQVKTFEVSSSFSDENIT-- 360
Query: 374 DTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTK----TIENCRDSAN-VASHS 428
T CSE + RS + C S + G + SSSN +SEG + +I + DS+N + + S
Sbjct: 361 -TRSCSEILKRSSQDCCISDLPSGDFLSSSNLQSEGVIPRLDGPSICSISDSSNRIITAS 419
Query: 429 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 488
I Q S +P V +KKA++SQ QLSLKSFF K SNV V+N+
Sbjct: 420 IIRQTKS---TPGTV--TKKKARQSQCSQLSLKSFFQKSSNVKD-----------GVDNA 463
Query: 489 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 548
D SL Q + +S+ + NK + D ++ ++ S + +Q +++N+
Sbjct: 464 AADASLDQADESKSNQNPNKTSMGDDESKSSKMVELDVSASNQEQGVVISGSSPQRDKND 523
Query: 549 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANC 608
+AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASNPE NC
Sbjct: 524 IALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASNPETNC 583
Query: 609 GYFKWAFSKSKQK 621
GYFKWA SKS+ +
Sbjct: 584 GYFKWAASKSRHR 596
>gi|357518059|ref|XP_003629318.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355523340|gb|AET03794.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 613
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/641 (56%), Positives = 455/641 (70%), Gaps = 48/641 (7%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADI+CFQETKL RQ++ +DLVM DGYESFFS
Sbjct: 1 MKIVSYNVNGLRQRITQFGSLRNLLNSFDADILCFQETKLSRQDVTADLVMVDGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKI----ME 113
CTRTS KGRTGYSGV TFCRV+S FSS E ALP+AAEEGFTGLL +TS K+ E
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVRSAFSSNEAALPLAAEEGFTGLLCSSQTSEGKLPFFMEE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---- 169
LEDFSKDELL +DSEGRCV+TDHGHF+LFN+YGPRA +DT RIQFK F+ +LQ
Sbjct: 121 DLEDFSKDELLNVDSEGRCVVTDHGHFVLFNIYGPRAGGDDTERIQFKKTFYRILQKRLE 180
Query: 170 -----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
GRRIFVVGDLNIAP A+DRCDAGPDF KNEFR WFRSML+E+GG F DVFR+KHP
Sbjct: 181 SLLHQGRRIFVVGDLNIAPFAVDRCDAGPDFEKNEFRRWFRSMLIENGGRFSDVFRAKHP 240
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++ +AYTCW ++GAE FNYG+RIDHILCAG CLH+ DLQSH+F+ CHV EC+IL YK
Sbjct: 241 DKMDAYTCWSQSSGAEVFNYGSRIDHILCAGSCLHKSDDLQSHSFIGCHVKECEILTQYK 300
Query: 285 RWKPG---NAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQ 341
R+KP ++ RWKGG S +LEGSDHAPV L +PE+ HSTPSL+SRY+P++ GVQQ
Sbjct: 301 RFKPESTLSSHRWKGGQSIKLEGSDHAPVCATLMGIPEVSLHSTPSLSSRYVPMVHGVQQ 360
Query: 342 TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 401
+LVS+LMKR V+ +SCK + + + E E VD+ ++ C+ +
Sbjct: 361 SLVSLLMKRRVS---ESCKMAN---GDILTVSTCERIEEPVDKIGSSTCECDLF------ 408
Query: 402 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH-VDRARKKAKKSQLGQLSL 460
NQ+SEG K E SA + S GS S + ++KKA+ SQ QLS+
Sbjct: 409 -PNQDSEGSILKPNEL---SAGSSQESVSKSGSVYEKSITQKCNESKKKARNSQSSQLSI 464
Query: 461 KSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHE 520
+SFF K +++ +N + D+ ++ +N+ + S ++ E+ + D+S + +
Sbjct: 465 RSFFQKSTSL----DNGVKDSCISYSNNEAEPSQPNSQLLET------CTIIDHSSNPGQ 514
Query: 521 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 580
+N+ VC D E +E++NVA EW+RIQ+LM+ SIPLCKGHKEPC+ARVV
Sbjct: 515 -DEINADVCGQDLAEINNSS-RKEEKSNVASQEWQRIQKLMQNSIPLCKGHKEPCIARVV 572
Query: 581 KKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
KK G FGRRF+ CARAEGPASNPEANCGYFKWA SKSK K
Sbjct: 573 KKQGANFGRRFYTCARAEGPASNPEANCGYFKWATSKSKNK 613
>gi|297798308|ref|XP_002867038.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297312874|gb|EFH43297.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 616
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 351/620 (56%), Positives = 435/620 (70%), Gaps = 56/620 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFESLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRT +KGRTGYSGVATFCRVKS SS E+ALPVAAEEG TGL+ ++ S + E
Sbjct: 61 CTRTCEKGRTGYSGVATFCRVKSASSSCEIALPVAAEEGITGLVNSNSRGGKNEMSAVGE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----- 168
GLE++ K+ELL+ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ +L
Sbjct: 121 GLEEYEKEELLRIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYDILERRWE 180
Query: 169 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
QGR++FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRKVFVVGDLNIAPFAVDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
ER++A+TCW S+TGAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CH+NEC+IL +YK
Sbjct: 241 ERKDAFTCWSSSTGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHINECEILTEYK 300
Query: 285 RWKPGN-APRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 343
R+K N A RWKGG+ T+L+GSDH PV+ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMATRWKGGLGTKLKGSDHVPVFTSFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 344 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 403
VSV MK+ ++ K+ + S S ++SN++ D S L N GI CS
Sbjct: 361 VSVFMKKRANEEAKAIEVSCSSSSQSNASSSCGDISTG---PLRNCVSMGISLEKSCSFE 417
Query: 404 NQESEGEFT--KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 461
N ES FT +T+ + N ++ G + +IS D RKKA+K Q QLSLK
Sbjct: 418 N-ESTCAFTEAETVASTGSIDNTCDGIRVSSGRAVNISR---DGDRKKARKIQSSQLSLK 473
Query: 462 SFFHKRSNVSHDDNNSITDTSLNVN---NSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 518
SFF S V + ++S + S + + S+T+ ++S +E E P T
Sbjct: 474 SFFTTNSKVKNGRDSSSSYVSSSPSSQAESITEPNVSSKEDGE--------PTTS----- 520
Query: 519 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 578
+ +QD+ K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVAR
Sbjct: 521 -----------TQEQDQSSSSA---KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVAR 566
Query: 579 VVKKPGPTFGRRFFVCARAE 598
VVKKPGPTFGRRF+VC+RAE
Sbjct: 567 VVKKPGPTFGRRFYVCSRAE 586
>gi|79610414|ref|NP_974691.2| endonuclease 2 [Arabidopsis thaliana]
gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana]
Length = 610
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 348/615 (56%), Positives = 420/615 (68%), Gaps = 46/615 (7%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ S + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----- 168
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 169 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
QGRR+FVVGDLNIAP A+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
ER++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300
Query: 285 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 343
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 301 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 360
Query: 344 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 403
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 361 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 417
Query: 404 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 463
N+ + G E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 418 NKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 475
Query: 464 FHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 523
F S V N++ D+S + +S + + P + P T S E
Sbjct: 476 FTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQ 526
Query: 524 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
SS K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKP
Sbjct: 527 TGSSA---------------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKP 571
Query: 584 GPTFGRRFFVCARAE 598
GPTFGRRF+VC+RAE
Sbjct: 572 GPTFGRRFYVCSRAE 586
>gi|297735011|emb|CBI17373.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 281/390 (72%), Positives = 317/390 (81%), Gaps = 18/390 (4%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR R+SQFGSL K L S DADIIC QETKL R EL +D+VMADGYESFFS
Sbjct: 1 MKIVTYNVNGLRPRISQFGSLLKFLSSLDADIICVQETKLSRHELTADVVMADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---------KI 111
CTRT+ KGR GYSGVATFCRVKS FSSTEVALP+AAEEGFTGLLE SG
Sbjct: 61 CTRTNSKGRVGYSGVATFCRVKSAFSSTEVALPIAAEEGFTGLLEKSGGFGTGKDEIPVK 120
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-- 169
EGLE+F+KDELLK+DSEGRC+ITDHGHF+LFN+YGPRADSEDT RIQFK FF +LQ
Sbjct: 121 AEGLEEFAKDELLKVDSEGRCIITDHGHFVLFNIYGPRADSEDTERIQFKHTFFQILQKR 180
Query: 170 -------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
GRRIFVVGDLNIAPAAIDRCDAGPDF KNEFR WFRSMLVE GG FFDVFR+K
Sbjct: 181 WETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFFDVFRAK 240
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
HP+RREAYTCW S+TGAE+FNYG+RIDHIL +G CLHQ H LQ FVTCHV ECDIL
Sbjct: 241 HPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKECDILTQ 300
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 342
+KRWKPGN PRWKGG S +LEGSDHAPV+M L ++P++ QHSTPSL++RY+P + G QQT
Sbjct: 301 FKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSLMDIPDVAQHSTPSLSARYVPTVHGFQQT 360
Query: 343 LVSVLMKREVAKQGKSCKFSGSLPAESNST 372
+ SVLMKR+ A+Q K+ + S S E+ +T
Sbjct: 361 IASVLMKRQKAEQVKTFEVSSSFSDENITT 390
>gi|242049990|ref|XP_002462739.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
gi|241926116|gb|EER99260.1| hypothetical protein SORBIDRAFT_02g031100 [Sorghum bicolor]
Length = 618
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 308/652 (47%), Positives = 408/652 (62%), Gaps = 68/652 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L +D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSADVIMAEGYEAFVS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------ETSGSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET G I+
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSSFSSQEVALPVAAEEGFTGLQDYAKNSETVGDFIIAM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEITREDLLRVDNEGRCIITDHGHFVLFNIYGPAVEEDDKERVRFKLLFYKIL 180
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 219
Q G+R+FVVGDLNIAPA+IDRCDA P F K FR+W RSML E GG FFD F
Sbjct: 181 QKRWEHLLALGKRVFVVGDLNIAPASIDRCDAPPGFEKQMFRVWMRSMLREHGGPFFDAF 240
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
RSKHPER AYTC+ GAE++NYG+RIDHIL +G CLH ++ HN CHV EC+I
Sbjct: 241 RSKHPERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHHCDSVEYHNIFCCHVEECEI 300
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ +KR N +WKGG S +LEGSDH PVY+ L E+PE+P H+ P A+RYLP +RG
Sbjct: 301 MNHFKRGNSENLSKWKGGRSNKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEVRGR 360
Query: 340 QQTLVSVLMKREVAKQGKSCKF--SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQG 397
QQ++VS L K ++ + + SG + S CS+N++ G+ G
Sbjct: 361 QQSIVSFLDKGKIYELQNAANLIQSGDIVGHSY-------CSDNMEN--RTIAKEGLTTG 411
Query: 398 VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR--ARKKAKKSQL 455
+ + G + D + + I S+ + + +KK K +
Sbjct: 412 I----TQFAKGGNLPSLMRKGTDLDQLTNECIIGISHSSQRASLSSTKFVPKKKIKSNLS 467
Query: 456 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 515
Q ++KSFF + S VN S + ++L + K+ +T+ +
Sbjct: 468 SQPTIKSFFQRPG-------------SKTVNASTSTSTLVTP--------AEKVDLTNQT 506
Query: 516 C-----SVHELHGVNSSVCSHDQDEKKGKRF-LDKERNNVALLEWRRIQQLMETSIPLCK 569
C S+HE +S + DQD L +++N A LEW+RIQQ M+ ++P CK
Sbjct: 507 CVPNDDSLHENMQCTTSA-AEDQDNTNASSCSLSADKSNGAALEWQRIQQKMKMTLPRCK 565
Query: 570 GHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
GH+EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA KSK+K
Sbjct: 566 GHREPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWAPGKSKEK 616
>gi|3036809|emb|CAA18499.1| putative protein [Arabidopsis thaliana]
gi|7270557|emb|CAB81514.1| putative protein [Arabidopsis thaliana]
Length = 641
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 325/615 (52%), Positives = 396/615 (64%), Gaps = 73/615 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLRQRVSQF SL KLLDSFDADIICFQETKLRRQEL +DL +ADGYESFFS
Sbjct: 1 MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG-------SKIME 113
CTRTS+KGRTGYSGVATFCRVKS SS E ALPV AEEG TGL+ ++ S + E
Sbjct: 61 CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120
Query: 114 GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----- 168
GLE++ K+ELL ID EGRCVITDHGHF++FNVYGPRA ++D RI+FK +F+ VL
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180
Query: 169 ----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
QGRR+FVVGDLNIAP A+DRC+AGPDF KNE
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNE------------------------- 215
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++A+TCW S++GAEQFNYG+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YK
Sbjct: 216 --KDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 273
Query: 285 RWKPGNAP-RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL 343
R+K N P RWKGG+ T+ +GSDH PV++ ++P+IP+HSTP LASRYLP+I G QQTL
Sbjct: 274 RFKNENMPTRWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTL 333
Query: 344 VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS 403
VSV KR ++ K+ + S S +SN++ D S L N GI CS
Sbjct: 334 VSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFE 390
Query: 404 NQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSF 463
N+ + G E + ++ + S + SS D RKKA+K Q QLSLKSF
Sbjct: 391 NKSTSG--VTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSF 448
Query: 464 FHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 523
F S V N++ D+S + +S + + P + P T S E
Sbjct: 449 FTTNSKV-----NNVEDSSSSYVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQ 499
Query: 524 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
SS K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKP
Sbjct: 500 TGSSA---------------KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKP 544
Query: 584 GPTFGRRFFVCARAE 598
GPTFGRRF+VC+RAE
Sbjct: 545 GPTFGRRFYVCSRAE 559
>gi|414886484|tpg|DAA62498.1| TPA: hypothetical protein ZEAMMB73_437105 [Zea mays]
Length = 621
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 298/647 (46%), Positives = 400/647 (61%), Gaps = 74/647 (11%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR LLD+ DADIICFQETKL RQ+L +D++MADGYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRCLLDALDADIICFQETKLSRQDLSADVIMADGYEAFVS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM-------- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL + + +
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSSFSSQEVALPVAAEEGFTGLQDYAKNSQTVGDFSIAM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + ++++LL++D+EGRC+ITDHGHF+LFN+YGP D +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGELTREDLLRVDNEGRCIITDHGHFVLFNIYGPAVDGDDKERVRFKLLFYKIL 180
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 219
Q G+R+FVVGDLNIAPA+IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QKRWERLLALGKRVFVVGDLNIAPASIDRCDAAPGFEKQMFREWLRSMLREHGGPFFDAF 240
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
RSKHPER AYTC+ GAE++NYG+RIDHIL +G CLH+ ++ H+ CHV EC+I
Sbjct: 241 RSKHPERTGAYTCFNQKIGAEEYNYGSRIDHILISGSCLHRCDSVEDHSIFCCHVEECEI 300
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ +KR N +WKGG S++LEGSDH PVY+ L E+PE+P H+ P A+RYLP IRG
Sbjct: 301 MNHFKRGNSENLSKWKGGRSSKLEGSDHIPVYILLKEIPELPVHNIPPSAARYLPEIRGR 360
Query: 340 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 399
QQ++VS L K ++ + + + ++ D L++YC G+ +
Sbjct: 361 QQSIVSFLDKGKIYE-----------------LQNAANLIQSEDTVLDSYCSDGLENTIL 403
Query: 400 CSSSNQESEGEFTK-----------TIENCRDSANVASHSTITQGSSNHISPFHVDRARK 448
EF K T N + + S ++Q S + F +K
Sbjct: 404 AKKGLATGITEFAKGGNLPSLMCKGTDLNQWINEGLMGISHVSQKKSLSSTKF---VPQK 460
Query: 449 KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ-EEVPESHHHSN 507
K K++ Q ++KSFF + + + + + S T + +S + +PE+
Sbjct: 461 KIKRNLSSQPTIKSFFQRPGSKTVNASTSTLVTPAETLDLTNQACVSNGDTLPEN----- 515
Query: 508 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 567
+ T + V + ++S CS L +++N A LEW+RIQ+ M+ ++P
Sbjct: 516 -MQCTTSAAKVQD--NTDASSCS-----------LSTDKSNAAALEWQRIQKKMKMTLPR 561
Query: 568 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
CKGH EPC+ R VKK GP GR F+VCARA+GPASNPEANCG+F+WA
Sbjct: 562 CKGHSEPCIPRSVKK-GPNIGRLFYVCARAQGPASNPEANCGHFQWA 607
>gi|115480379|ref|NP_001063783.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|50726587|dbj|BAD34221.1| AP endonuclease 2-like [Oryza sativa Japonica Group]
gi|113632016|dbj|BAF25697.1| Os09g0536000 [Oryza sativa Japonica Group]
gi|215736944|dbj|BAG95873.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 619
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 302/658 (45%), Positives = 393/658 (59%), Gaps = 79/658 (12%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS------GSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET+ G ++
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNSETIGDFVLVT 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 219
Q G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
RSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG
Sbjct: 301 MDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360
Query: 340 QQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 399
QQ++VS L K + + + ++DR+ + C G+ +
Sbjct: 361 QQSIVSFLRKGMIYEHKDAM---------------------SMDRADESCCGGGLERKAI 399
Query: 400 CSSSNQESEGEFTK--------------TIENCRDSANVASHSTITQGSSNHISPFHVDR 445
+F+K + N S N + + + + + F +
Sbjct: 400 YKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSK 459
Query: 446 A--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 503
A KK K + Q ++KSFF + + D + NS+ + + E H
Sbjct: 460 AVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELH 509
Query: 504 HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMET 563
N C ++ + DQ L ++ N A LEW+RIQQ M+
Sbjct: 510 DPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKM 560
Query: 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 561 TLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|218202527|gb|EEC84954.1| hypothetical protein OsI_32178 [Oryza sativa Indica Group]
Length = 619
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/651 (46%), Positives = 394/651 (60%), Gaps = 65/651 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS------GSKIM-- 112
C R+S KGR YSGVATFCRV S FSS EV LPVAAEEGFTGL ET+ G ++
Sbjct: 62 CNRSS-KGRGAYSGVATFCRVTSAFSSQEVGLPVAAEEGFTGLQETAKNSETIGDFVLVT 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERVRFKLLFYKIL 180
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 219
Q G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML E GG FFD F
Sbjct: 181 QRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLREHGGPFFDAF 240
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
RSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+ CHV EC+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSIFPCHVEECEI 300
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A+RYLP IRG
Sbjct: 301 MDHFRRGNSKNMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSAARYLPEIRGR 360
Query: 340 QQTLVSVLMK---------REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 390
QQ++VS L K + + +SC G ES + E ++ S N
Sbjct: 361 QQSIVSFLRKGMIYEHKDAMSMDRADESCCGGG---LESKAIYKEEPPTDIAKFSKGNDL 417
Query: 391 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 450
S I + + N+ S G + + + + + ++ SN KK
Sbjct: 418 HSVIKRKIRDQLLNEGSSGNSHNSTAALLATQSRKASFSCSKTVSN-----------KKN 466
Query: 451 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 510
K + Q ++KSFF + + D + NS+ + + E H N
Sbjct: 467 KHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPPDTLHGMDELHDPKNDCL 516
Query: 511 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 570
C ++ + DQ L ++ N A LEW+RIQQ M+ ++PLCKG
Sbjct: 517 PESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLEWQRIQQRMKMTLPLCKG 567
Query: 571 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
H EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+WA KSK+K
Sbjct: 568 HHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQWATVKSKEK 617
>gi|357159663|ref|XP_003578519.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Brachypodium distachyon]
Length = 624
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/646 (47%), Positives = 404/646 (62%), Gaps = 54/646 (8%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KIVTYNVNGLR RV+Q GSLR+LLD+ DADIICFQETKL RQ+L D++MA+GYE+F S
Sbjct: 2 VKIVTYNVNGLRPRVAQHGSLRRLLDALDADIICFQETKLSRQDLSGDVIMAEGYEAFIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-GSKIM------- 112
C RT +GR YSGVATFCRV S FS EVALPVAAEEGFTGL ++ GS I+
Sbjct: 62 CNRTL-RGRGAYSGVATFCRVTSAFSCQEVALPVAAEEGFTGLQGSAEGSAIIGDFVLEM 120
Query: 113 ----EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
EGL +++ELL++D+EGRC+ITDHGHF+LFN+YGP +D R++FKL F+ +L
Sbjct: 121 PVEEEGLGVITREELLRVDNEGRCIITDHGHFVLFNIYGPAVGEDDEERVRFKLLFYKIL 180
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVF 219
Q G+R+FVVGD+NIAP +IDRCDA P F K FR W RSML E+GG FFD F
Sbjct: 181 QKRWDFLLALGKRVFVVGDMNIAPGSIDRCDAPPGFEKQMFREWLRSMLRENGGPFFDAF 240
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
RSKHPER AYTC+ GAE++NYG+RIDHIL +G C H + ++ H+ CHV +C+I
Sbjct: 241 RSKHPERVGAYTCFNQKVGAEEYNYGSRIDHILISGACFHHCNSMEDHSVFHCHVEDCEI 300
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ ++R N +WKGG S +LEGSDH PVY+ L +PE+P H+TPS A+RYLP IRG
Sbjct: 301 MNHFRRGDSENISKWKGGRSIKLEGSDHIPVYIILNGIPEVPVHNTPSTAARYLPEIRGR 360
Query: 340 QQTLVSVLMKRE--VAKQGKSCKFSGSLPAESNSTGDTEDCS---ENVDRSLNNYCDSGI 394
QQT+VS L+K + + S ES+ + D E+ S E + ++ + G
Sbjct: 361 QQTIVSFLLKGKNYELEDATGSNMSKDRIDESSCSDDLENKSISKEELPTAITEFSKGGN 420
Query: 395 LQGVYCSSSNQESEGEFTKTIENCRDSAN-VASHSTITQGSSNHISPFHVDRARKKAKKS 453
L + C N + + + ++ +A S S N + + KK K +
Sbjct: 421 LPSLTCKRRNLDHWVNEGSSGNSNNNNPTLLAPQSQKASFSGNKFT------SNKKNKHN 474
Query: 454 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 513
Q ++KSFF + + D ++NN V+ S + VP+ + P D
Sbjct: 475 LSSQPTIKSFFRQPETKTGD---------ADINNPVS----SVDTVPDMDEL--RSPKDD 519
Query: 514 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 573
S+ E H ++ DQD ++ NVA LEW+RIQ M+T++PLCKGH+E
Sbjct: 520 ---SLLE-HIHCTAAADEDQDNSDIPCSQSTDKCNVATLEWQRIQLRMKTTLPLCKGHRE 575
Query: 574 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 619
PC+ R VKK G GR F+VCARA+GP+SNPEANCG+F+WA KSK
Sbjct: 576 PCIPRSVKK-GSNIGRLFYVCARAQGPSSNPEANCGHFQWASVKSK 620
>gi|356561152|ref|XP_003548849.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase 2-like [Glycine max]
Length = 566
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/442 (57%), Positives = 324/442 (73%), Gaps = 21/442 (4%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV+YNVNGLRQR++QFGSLR LL+SFDADI+CFQET+LRRQE+ +DLVMA GYESFFS
Sbjct: 1 MKIVSYNVNGLRQRIAQFGSLRNLLNSFDADIVCFQETELRRQEVTADLVMAGGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSK---IMEG 114
CTRTS KGRTGYSGV TFCRVKS F S EV L +A +EGFTGLL +TS +K +M
Sbjct: 61 CTRTSQKGRTGYSGVITFCRVKSAFLSNEVVLQLAEKEGFTGLLGNFQTSNNKLPFLMGD 120
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL------ 168
L +F+KDELL +DSEGRC+ITDH HF+LFNVYG +A +DT RIQFK F+ +L
Sbjct: 121 LXEFTKDELLSLDSEGRCIITDHTHFVLFNVYGSQAGGDDTERIQFKQIFYRILQKRWGS 180
Query: 169 ---QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
QGRRIFVV DLNIAP AIDRCD GPDF KNE WF+SML+E+ G F DVFR+KHP+
Sbjct: 181 LLHQGRRIFVVVDLNIAPFAIDRCDIGPDFEKNEXVXWFKSMLIENWGQFSDVFRAKHPD 240
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
RREAYT W NTGAE FN+G+RIDHIL +G C H+ DLQ H+F+ C V ECDIL YKR
Sbjct: 241 RREAYTSWSQNTGAEVFNFGSRIDHILFSGSCXHEL-DLQCHSFIRCLVKECDILTQYKR 299
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTL-- 343
KP + RWKGG S +LEGSDHAPV+M L E+P++ HSTP L++RY+P++ G+QQTL
Sbjct: 300 CKPESTLRWKGGRSVKLEGSDHAPVFMSLHEIPDVSLHSTPPLSARYVPMVHGIQQTLAT 359
Query: 344 --VSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCS 401
+SVLMKR+V+K+ KS + + A +ST + ++ +++ ++ L+ +
Sbjct: 360 KHLSVLMKRQVSKKMKSFEMAQEDIA-MDSTCERKEPVNRAEKAKSSQWSQLSLRSFFQK 418
Query: 402 SSNQESEGEFTKTIENCRDSAN 423
S+N ++ ++C D +N
Sbjct: 419 SANLDNGSSVKVVNDSCTDYSN 440
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 443 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 502
V+RA +KAK SQ QLSL+SFF K +N+ DN S VN+S TD S +Q E +
Sbjct: 396 VNRA-EKAKSSQWSQLSLRSFFQKSANL---DNGSSVKV---VNDSCTDYSNNQAEPSQP 448
Query: 503 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 562
+ P S + +G+++ C D G +E +NVA LEW+RIQQLM+
Sbjct: 449 SPRLQETPTVFAHSSSPKKYGLDTDTCDQDLAGPNGSS-TKEEMSNVASLEWQRIQQLMQ 507
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSKQK 621
SIP+CKG+KEPC+ARVVKK GP FGRRF+VCA AEGPASN EANCGYFKWA SKSK K
Sbjct: 508 NSIPICKGYKEPCIARVVKKQGPNFGRRFYVCAHAEGPASNLEANCGYFKWASSKSKNK 566
>gi|222641992|gb|EEE70124.1| hypothetical protein OsJ_30144 [Oryza sativa Japonica Group]
Length = 568
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 265/608 (43%), Positives = 349/608 (57%), Gaps = 79/608 (12%)
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--- 107
MA+GYE+F SC R+S KGR YSGVATFCRV S FSS EVALPVAAEEGFTGL ET+
Sbjct: 1 MAEGYEAFISCNRSS-KGRGAYSGVATFCRVTSAFSSQEVALPVAAEEGFTGLQETAKNS 59
Query: 108 ---GSKIM------EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
G ++ EGL + +K+ELLK+D+EGRCVITDHGHF+LFN+YGP + +D R+
Sbjct: 60 ETIGDFVLVTPVEEEGLGEVTKEELLKVDNEGRCVITDHGHFVLFNIYGPAVEEDDIERV 119
Query: 159 QFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV 209
+FKL F+ +LQ G+R+FVVGDLNIAP++IDRCDA P F K FR W RSML
Sbjct: 120 RFKLLFYKILQRRWEHLLALGKRVFVVGDLNIAPSSIDRCDAQPGFEKQTFRKWLRSMLR 179
Query: 210 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 269
E GG FFD FRSKHPER AYTC+ GAE +NYG+RIDHIL +G C H + H+
Sbjct: 180 EHGGPFFDAFRSKHPERVGAYTCFNQKVGAEVYNYGSRIDHILISGACFHHCGSVDDHSI 239
Query: 270 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 329
CHV EC+I+ ++R N WKGG S++LEGSDH PVY+ L E+PE+P H+TPS A
Sbjct: 240 FPCHVEECEIMDHFRRGNSENMSMWKGGRSSKLEGSDHIPVYIVLNEIPELPVHNTPSSA 299
Query: 330 SRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNY 389
+RYLP IRG QQ++VS L K + + + ++DR+ +
Sbjct: 300 ARYLPEIRGRQQSIVSFLRKGMIYEHKDAM---------------------SMDRADESC 338
Query: 390 CDSGILQGVYCSSSNQESEGEFTK--------------TIENCRDSANVASHSTITQGSS 435
C G+ + +F+K + N S N + + +
Sbjct: 339 CGGGLERKAIYKEEPPTDIAKFSKGNDLHSVIKRKIRDQLLNEGSSGNSHNSTAALLATQ 398
Query: 436 NHISPFHVDRA--RKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTS 493
+ + F +A KK K + Q ++KSFF + + D + NS+
Sbjct: 399 SRKASFSCSKAVSNKKNKHNLSSQPTIKSFFQQPKSKPGDSS----------TNSIVTPP 448
Query: 494 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 553
+ + E H N C ++ + DQ L ++ N A LE
Sbjct: 449 DTLHGMDELHDPKNDCLPESIQC---------TTPATEDQGNSDVPCSLSTDKCNEATLE 499
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
W+RIQQ M+ ++PLCKGH EPC+ R VKK G GR F+VCARA+GPASN EANCG+F+W
Sbjct: 500 WQRIQQRMKMTLPLCKGHHEPCIPRSVKK-GSNIGRLFYVCARAQGPASNQEANCGHFQW 558
Query: 614 AFSKSKQK 621
A KSK+K
Sbjct: 559 ATVKSKEK 566
>gi|168059759|ref|XP_001781868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666675|gb|EDQ53323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/646 (39%), Positives = 348/646 (53%), Gaps = 93/646 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IVTYNV LR R+ +L+ LDS ++DIIC QETKL RQEL +++ +ADGYESFFS
Sbjct: 1 MRIVTYNVFSLRARLVPPRTLKSFLDSLESDIICLQETKLTRQELTAEIAVADGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME------- 113
CTRT KGR YSGVATFCR T A+PVAA+EGFTG ++ +
Sbjct: 61 CTRTVSKGRVRYSGVATFCR-------TPTAVPVAADEGFTGAQSSTHQTNYKNDHARVG 113
Query: 114 ------GLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV 167
+E+ S+ +LL++D EGRC++TDHG F+LFN+YGP ++ R +FKL+F+
Sbjct: 114 CYEEVLNMENMSRQDLLQLDWEGRCLVTDHGSFVLFNLYGPSVGPDNEERYEFKLRFYRA 173
Query: 168 LQ---------GRRIFVVGDLNIAPAAIDRC--DAGPDFAKNEFRIWFRSMLVESGGSFF 216
LQ GRR+ VGD NI+P ID C D+ PDF K+ R WFRS L +GG F
Sbjct: 174 LQNRWEGLLKNGRRVIAVGDFNISPFPIDSCHSDSNPDFDKSSIRQWFRSQLRANGGPFV 233
Query: 217 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD---------LQSH 267
DVFR HP R AYT W +G+E+FNYGTR+D I+ AG C HQ +SH
Sbjct: 234 DVFREIHPIREGAYTFWNQMSGSEEFNYGTRLDLIIAAGGCFHQVRSEESNSLLKAEESH 293
Query: 268 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 327
+F TC V +CDIL+++KR+K + PR G + +L+GSDH PVY+ L P + QH P
Sbjct: 294 HFGTCEVEDCDILLEFKRFKADSVPRRGGEKTQKLDGSDHVPVYVQLRPQPPLEQHDVPP 353
Query: 328 LASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 387
LA+R++P IRG QQ++ S L KR SC + A+ +
Sbjct: 354 LAARFMPEIRGRQQSIASFLQKR-------SCSLIMDIEAQKETKPRLS----------- 395
Query: 388 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 447
L C N +F K+ + + S + T+G N + A
Sbjct: 396 -------LPTATCVRKNPPKVTKFLKSQNSKQKSLHSFFMLPTTKGKENTEAANAFKLAF 448
Query: 448 KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN 507
+ + L + SL+ N HD ++ +T+ +S +SL Q+ ES +H
Sbjct: 449 QDSDSETLLKPSLEQSQTFVINSPHDGDSQ--ETNAEPTDSSNTSSLKQDCTCESQNH-- 504
Query: 508 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 567
+P +V + + +EK A +EW+RIQ+ M +P+
Sbjct: 505 -VP------------EAVETVETAETNEKLS-----------AKIEWQRIQKTMMNRVPM 540
Query: 568 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
C GH EPC V+KKPGP GR+F CARA+GP+SNPEA C YFKW
Sbjct: 541 CSGHNEPCATYVMKKPGPNHGRKFHCCARAQGPSSNPEAKCKYFKW 586
>gi|302820698|ref|XP_002992015.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
gi|300140137|gb|EFJ06864.1| hypothetical protein SELMODRAFT_134604 [Selaginella moellendorffii]
Length = 558
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/379 (54%), Positives = 253/379 (66%), Gaps = 35/379 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IV+YNVNGLR R+S SLR LDS DADIIC QETK+RRQEL +D+ GYESFFS
Sbjct: 1 MRIVSYNVNGLRARLSPARSLRAFLDSLDADIICLQETKIRRQELTADIATPQGYESFFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
CTRT KGR GYSGVATFC+V+ VALPVAAEEGFTGLL + ++ EG
Sbjct: 61 CTRTVKKGRLGYSGVATFCKVEC---GNNVALPVAAEEGFTGLL--TSARAGEGDKEFWL 115
Query: 115 --------LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+E F++ ELL +D+EGRC++TDHGHF+LFNVYGP D R FKL F+
Sbjct: 116 GSYDPVLTVEGFTRQELLDLDNEGRCIVTDHGHFVLFNVYGPNVGCGDAERQDFKLNFYQ 175
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 217
VLQ GRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D
Sbjct: 176 VLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSD 235
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFV 270
FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH F
Sbjct: 236 AFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHGNSSCDGFA 295
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
C + CDIL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+
Sbjct: 296 KCGTDMCDILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAA 355
Query: 331 RYLPIIRGVQQTLVSVLMK 349
R++P +RG QQ++VS+ K
Sbjct: 356 RFMPELRGRQQSIVSIFQK 374
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 451 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 508
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N +
Sbjct: 404 KLQRLSQSRLTRFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNCSE 459
Query: 509 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 568
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 569 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 598
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|302762180|ref|XP_002964512.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
gi|300168241|gb|EFJ34845.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
Length = 540
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/379 (53%), Positives = 253/379 (66%), Gaps = 35/379 (9%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+IV+YNVNGLR R+S SLR LDS DADIIC QETK+RRQEL +D+ GYESF S
Sbjct: 1 MRIVSYNVNGLRARLSPARSLRAFLDSLDADIICLQETKIRRQELTADIATPQGYESFIS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
CTRT KGR GYSGVATFC+V+ VALPVAAEEGFTGLL + ++ EG
Sbjct: 61 CTRTVKKGRLGYSGVATFCKVEC---GNNVALPVAAEEGFTGLL--TSARAGEGDKEFWL 115
Query: 115 --------LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+E F++ ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL F+
Sbjct: 116 GSYDPVLTVEGFTRQELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLNFYK 175
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFD 217
VLQ GRRI +VGDLNI+P ID CD GP+F + R WFRS+LV GG+F D
Sbjct: 176 VLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFSD 235
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSHN------FV 270
FR HPER EAYTCW +GAE+FNYG+RIDH+L AGPC H + SH+ F
Sbjct: 236 AFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHDNSSCDGFA 295
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
C + CDIL+++KR K PRW GG S +L+GSDHAPV + L +P IP H P LA+
Sbjct: 296 KCGTDMCDILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQLKHLPSIPPHEAPQLAA 355
Query: 331 RYLPIIRGVQQTLVSVLMK 349
R++P +RG QQ+++S+ K
Sbjct: 356 RFMPELRGRQQSILSIFQK 374
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 19/150 (12%)
Query: 451 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSN--K 508
K +L Q L F ++R H+ ++ ++ T + V+ + + ++ PES ++N K
Sbjct: 404 KLQRLSQSRLTGFCYQR----HESSDKMSCTEVAVHGQSSSLTDEIQQSPESCDNNNLSK 459
Query: 509 IPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 568
+ S S+ ++ + S EK W R++ LM ++PLC
Sbjct: 460 VAACGESASLMDMSDETPTESSQQSLEKSAA-------------GWERLKSLMSRNLPLC 506
Query: 569 KGHKEPCVARVVKKPGPTFGRRFFVCARAE 598
KGH EPCV R VKK GP GR F+VCARA+
Sbjct: 507 KGHGEPCVVRTVKKAGPNLGRGFYVCARAK 536
>gi|22329202|ref|NP_195329.2| endonuclease 2 [Arabidopsis thaliana]
gi|17064948|gb|AAL32628.1| putative protein [Arabidopsis thaliana]
gi|20259962|gb|AAM13328.1| putative protein [Arabidopsis thaliana]
gi|332661206|gb|AEE86606.1| endonuclease 2 [Arabidopsis thaliana]
Length = 408
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/437 (50%), Positives = 278/437 (63%), Gaps = 30/437 (6%)
Query: 186 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 304
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 305 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 364
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 365 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 544
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 545 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 604
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+SNP
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSNP 391
Query: 605 EANCGYFKWAFSKSKQK 621
EANCGYFKWA SK + K
Sbjct: 392 EANCGYFKWASSKFRDK 408
>gi|170665738|gb|ACB29408.1| endonuclease [Arabidopsis thaliana]
Length = 408
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/440 (49%), Positives = 274/440 (62%), Gaps = 36/440 (8%)
Query: 186 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 304
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR N P RWKGG+ T+L+G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRXXNENMPTRWKGGLVTKLKG 120
Query: 305 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 364
SDH PV++ ++P+IP+HST L SRYLP+I G QQTLVSV KR ++ K + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTXPLXSRYLPMIYGFQQTLVSVFKKRRANEEAKVIEVSCS 180
Query: 365 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
++SN++ D S L N GI CS N E T + A
Sbjct: 181 SSSQSNASSICGDISTG---PLRNCGSMGISLEKSCSFEN-----ESTSVVTEAETVATT 232
Query: 425 ASHSTITQG-SSNHISPFHVDR--ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 481
S ++ G + + ++ R RKKA+K Q QLSLKSFF S V N++ D+
Sbjct: 233 GSIDNLSDGIRAPSVRAVNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDS 287
Query: 482 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRF 541
S + +S + + P + P T S E SS
Sbjct: 288 SSSYVSSSPSSQVESITEPNVSRKDDSDPTT----STQEQDQTGSSA------------- 330
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 601
K++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAEGP+
Sbjct: 331 --KQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPS 388
Query: 602 SNPEANCGYFKWAFSKSKQK 621
NPEANCGYFKWA SK + K
Sbjct: 389 CNPEANCGYFKWASSKFRDK 408
>gi|227202652|dbj|BAH56799.1| AT4G36050 [Arabidopsis thaliana]
Length = 409
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 204/414 (49%), Positives = 258/414 (62%), Gaps = 30/414 (7%)
Query: 186 IDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
+DRC+AGPDF KNEFR WFRS+LVE GGSF DVFRSKHPER++A+TCW S++GAEQFNYG
Sbjct: 1 MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP-RWKGGMSTRLEG 304
+RIDHIL AG CLHQ D Q H+F+ CHV ECDIL +YKR+K N P RWKGG+ T+ +G
Sbjct: 61 SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKGGLVTKFKG 120
Query: 305 SDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 364
SDH PV++ ++P+IP+HSTP LASRYLP+I G QQTLVSV KR ++ K+ + S S
Sbjct: 121 SDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVSCS 180
Query: 365 LPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
+SN++ D S L N GI CS N+ + G E + ++
Sbjct: 181 SSTQSNTSSICGDISTG---PLRNCGSMGISLEKSCSFENKSTSG--VTEAETVAATGSI 235
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ S + SS D RKKA+K Q QLSLKSFF S V N++ D+S +
Sbjct: 236 DNLSDGIRASSVRALNISRDGDRKKARKIQSSQLSLKSFFTTNSKV-----NNVEDSSSS 290
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 544
+S + + P + P T S E SS K
Sbjct: 291 YVSSSPSSQVESITEPNVSGKEDSEPTT----STQEQDQTGSSA---------------K 331
Query: 545 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 598
++N+ AL+EW+RIQ LM+ SIPLCKGHKE CVARVVKKPGPTFGRRF+VC+RAE
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAE 385
>gi|260798967|ref|XP_002594471.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
gi|229279705|gb|EEN50482.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
Length = 561
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 209/662 (31%), Positives = 295/662 (44%), Gaps = 142/662 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T+N+NG+R L+++LDS DADI+C QETK+ R +L + +GY S+FS
Sbjct: 1 MRILTWNINGVRATKE---PLKQVLDSLDADIVCLQETKVTRDQLDEASAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
+R R+GYSGVAT+C+ + A P+ AEEG TGLL + + G
Sbjct: 58 FSRV----RSGYSGVATYCK--------DGATPIKAEEGLTGLLTNQKEEDIIGCYGDQT 105
Query: 118 -FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHV 167
F++DEL +D EGR VIT H + NVY PRAD E R FKL+F+ +
Sbjct: 106 MFTEDELRLLDKEGRAVITQHTIRDTDGKECSLAVINVYCPRADPEKEERKDFKLRFYRL 165
Query: 168 LQ---------GRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVES--- 211
LQ G + V+GD+N + ID CD PD F++N R W L++
Sbjct: 166 LQTRAQALLQAGSHVIVLGDVNTSHKPIDHCD--PDDIEYFSENPGRKWLDQFLLDPHQT 223
Query: 212 ------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259
GG F D FR HP +R A+TCW + TGA Q NYGTRID+I L+
Sbjct: 224 GDSGSSESEKGPGGYFVDTFRFFHPTQRSAFTCWSTVTGARQTNYGTRIDYIFANRALLN 283
Query: 260 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 319
Q D C I+ + +EGSDH PV L +
Sbjct: 284 QFQD-------------CTIMPE-------------------VEGSDHCPVRGELACIV- 310
Query: 320 IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 379
+ P+L S+Y+P G QQ L + K K+G++ + S + S+S G ++ S
Sbjct: 311 VASGKCPALCSKYMPEFVGKQQKLSAFFTK---VKKGENGEEKSSQDSVSSSQGTSDGHS 367
Query: 380 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 439
E CS + E + + A H
Sbjct: 368 E------------------ICSQQSSSQSWENHSSESEGSSIISTAKHG----------- 398
Query: 440 PFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEV 499
R KK K Q Q +L SFF +++ + D+ + N D +
Sbjct: 399 -----RGMKKQKTDQGKQGTLLSFFGRKTGIEADEKRKANTLDVTQENPERDVACENVVS 453
Query: 500 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 559
+S H SN D S H N K + ++N A W+ + +
Sbjct: 454 SQSVHPSNSSVDVDDSVRKESKHAEND----------KSTVEMKPKQNQAAF--WKTVLK 501
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 619
CKGH+EPCV R VKK GP FG++F+VCAR +G +SNP A C +F+W S+ K
Sbjct: 502 GPPPPP-PCKGHREPCVLRTVKKQGPNFGKQFYVCARPQGHSSNPAARCDHFQWV-SRGK 559
Query: 620 QK 621
K
Sbjct: 560 DK 561
>gi|410900065|ref|XP_003963517.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Takifugu rubripes]
Length = 558
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 209/656 (31%), Positives = 288/656 (43%), Gaps = 146/656 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++VT+N+NG+R + G ++K LDS DADIIC QETK+ R L + + DGY S+FS
Sbjct: 1 MRVVTWNINGIR---TFRGGIKKALDSLDADIICVQETKVTRDLLDAQTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AAEEG TGLL T + +F
Sbjct: 58 YSR----GRSGYSGVATYCK--------DAATPFAAEEGLTGLLTTHEGAVGCYGNQAEF 105
Query: 119 SKDELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ- 169
S+DEL +D+EGR VIT H + NVY PRAD E R QFKL F+ +LQ
Sbjct: 106 SRDELQMLDNEGRAVITQHKVNCQDKEEALTVINVYCPRADPEKPERKQFKLHFYQLLQR 165
Query: 170 --------GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFR-------------- 205
G + V+GD+N + ID CD DF +N R W
Sbjct: 166 RAEAILKDGSHVIVLGDINTSHQRIDHCDPSDKDDFDENPGRKWLNVFLHGVGQEEEAVE 225
Query: 206 --------SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
S L SGG F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 226 AAEFSEVISTLPGSGGKFVDTFRYFHPTRANAFTCWSTLTGARQTNYGTRIDYIFA---- 281
Query: 258 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
+H L FV DI+ + +EGSDH PV+ L
Sbjct: 282 --DRH-LAKGQFVA-----ADIMPE-------------------VEGSDHCPVWGQL-SC 313
Query: 318 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 377
+P P L +RYLP G QQ L ++ + SLP +S +
Sbjct: 314 SLLPSTKPPPLCTRYLPEFAGKQQKLSHFFVRADQ---------KSSLPEQSKT------ 358
Query: 378 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 437
L G S +E + + + S S + +G
Sbjct: 359 -----------------LPG---SQEEEEKRENLSPVADKTGQKRLLKSDSALPKG---- 394
Query: 438 ISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE 497
+ K K + Q SL SFF + V++ + T N D +++
Sbjct: 395 -------KKTKSVKTASNPQGSLLSFF--KPKVTNVIASGDTPVGQRENRQKLD-AVAPS 444
Query: 498 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 557
++ S V+ + EL S CS ++ ++ + + + + W+ +
Sbjct: 445 QI------SRTADVSATAGGEAELRCNGSQPCSSTEENEQRTPTPQAAKKSSSSVFWKSV 498
Query: 558 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
P CK H EPC R VKK GP GR+FFVCAR +G SNP+A C +F+W
Sbjct: 499 LH-GPPPPPSCKVHGEPCALRTVKKEGPNMGRQFFVCARPQGHVSNPDARCNFFEW 553
>gi|224134090|ref|XP_002327753.1| predicted protein [Populus trichocarpa]
gi|222836838|gb|EEE75231.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 185/512 (36%), Positives = 234/512 (45%), Gaps = 170/512 (33%)
Query: 83 SPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFIL 142
S FSS+EVALPVAAEEGFT ++ SK +GL++F+KD L+K
Sbjct: 22 SAFSSSEVALPVAAEEGFTRFVD--WSKRRKGLQEFAKDGLVKF---------------- 63
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI 202
YGP+A SED RI+FK++
Sbjct: 64 --AYGPQAASEDMERIEFKMK--------------------------------------- 82
Query: 203 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
FF + + + + CW +TGAEQFN+G+RIDHILCAGPCLHQ+H
Sbjct: 83 ------------FFKILQ------KRSMQCWSLSTGAEQFNFGSRIDHILCAGPCLHQEH 124
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
DLQ +N ++CHV ECDIL +YKRWK G+ RWKGG RLEGSDHAPVY L E+ +IP
Sbjct: 125 DLQGNNSLSCHVKECDILTEYKRWKLGDTSRWKGGWGIRLEGSDHAPVYTSLEEIHDIPT 184
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENV 382
HST L+SRYL + C PA S D V
Sbjct: 185 HSTLPLSSRYL-------------------SANDSWC------PANSWLLHDFNPAGYQV 219
Query: 383 DRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH 442
+ +L G + NQ D N + I Q + P
Sbjct: 220 HLQMEM-----LLYGREFTDENQ--------------DRPNT---TVILQSQHTKLVP-- 255
Query: 443 VDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 502
+ +KKA+KS QLSL+SFF + N+S NS T TS ++ P S
Sbjct: 256 AEGTQKKARKSWCFQLSLRSFFQRSPNLSTVAENSSTKTS------------PRQAEPNS 303
Query: 503 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 562
+HS+ SH D+K K +IQQLM+
Sbjct: 304 RNHSSD---------------------SHAMDDKSSSPNYCK-----------KIQQLMQ 331
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 594
SIP+CKGHKEPCVAR+VKKPGPT GRRFF C
Sbjct: 332 NSIPVCKGHKEPCVARIVKKPGPTLGRRFFAC 363
>gi|432866619|ref|XP_004070893.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oryzias latipes]
Length = 553
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 207/654 (31%), Positives = 282/654 (43%), Gaps = 147/654 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + G +++ LD DADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIR---TFKGGIKRALDLLDADIICVQETKVTRDLLDEGSAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+CR + A P+AAEEG TGLL + F
Sbjct: 58 YSR----GRSGYSGVATYCR--------DSATPLAAEEGLTGLLTNHDGAVGCYGDQTGF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
S +EL +D+EGR +IT H + NVY PRAD E R QFKLQF+ +LQ
Sbjct: 106 SSEELQLLDNEGRAMITKHRIMCQDQEEKTLTVINVYCPRADPEKPERKQFKLQFYKLLQ 165
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSMLVE-------- 210
G + V+GD+N + ID CD +F N R W L
Sbjct: 166 HRAEAVLKAGSHVIVLGDVNTSHRPIDHCDPCETNEFEDNPGRKWLNEFLHNGSPEDVLD 225
Query: 211 ---------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ G F D FR HP R A+TCW + TGA Q NYGTRID+I
Sbjct: 226 EDPKQAPELNSGRFVDTFRLFHPTRTNAFTCWSTLTGARQTNYGTRIDYI---------- 275
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
F C + E + + +EGSDH PV+ L +P
Sbjct: 276 -------FADCKLAEEQFVAT--------------DIMPEVEGSDHCPVWGKLS-CSVLP 313
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 381
P L +RYLP G QQ L L+K V ++ + LP + + ++ +EN
Sbjct: 314 SSKPPPLCTRYLPEFVGKQQKLSRFLIK--VDQKSSQPEQKSVLPG----SQEDDERTEN 367
Query: 382 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF 441
V+ S N +L A+ S I +G
Sbjct: 368 VNPSGANSVKKRLL-----------------------------AADSVIPKG-------- 390
Query: 442 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 501
+ K S Q +L SFF + D T TS + + S P
Sbjct: 391 ---KKTKMQSSSSKPQGNLLSFFKPKVANLKDQEKETTFTSSQSDQKAKASRDSSTVTPA 447
Query: 502 SHHHSNKIP-VTDYSCSVHELHGVNSSVCSHDQDEKKGK-RFLDKERNNVALLEWRRIQQ 559
+ + + + C+V D D++K + + +L W+ +
Sbjct: 448 AAEETERASDASSQRCTV------------LDADKQKNTVQPTVAQSKGASLGFWKSVLH 495
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
P CK H+EPCV R VKK GP G++FFVCAR +G ASNPEA C +F+W
Sbjct: 496 -GPPPAPSCKVHREPCVLRTVKKEGPNVGKQFFVCARPQGHASNPEARCNFFEW 548
>gi|348503254|ref|XP_003439180.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Oreochromis niloticus]
Length = 563
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 211/660 (31%), Positives = 291/660 (44%), Gaps = 147/660 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+N+NG+R + G ++K LDS DAD+IC QETK+ R L + + DGY S+FS
Sbjct: 1 MKVVTWNINGIR---AFRGGIKKALDSLDADVICIQETKVTRDLLDERIAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ E A P AAEEG TGLL + +F
Sbjct: 58 YSR----GRSGYSGVATYCK--------ESATPFAAEEGLTGLLVNHKDAVGCYGDHTEF 105
Query: 119 SKDELLKIDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVLQG 170
S +EL +D+EGR VIT H + NVY PRAD E R +FKLQF+++LQ
Sbjct: 106 SSEELQLLDNEGRAVITQHKIKCQDKEKILTVINVYCPRADPEKPERKRFKLQFYNLLQS 165
Query: 171 R---------RIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVES-------- 211
R + V+GD+N + ID CD DF +N R W L
Sbjct: 166 RAEAVLKDGSHVIVLGDINTSHRPIDHCDPSEIDDFGENPGRKWLNGFLHRGKQEEESDE 225
Query: 212 --------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
GG F D FR HP R A+TCW + TGA Q NYGTRID+I C
Sbjct: 226 EEHDKESEETDPLHGGKFVDTFRFFHPTRINAFTCWSTLTGARQTNYGTRIDYIF--ADC 283
Query: 258 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
L FV DI+ + +EGSDH PV+ L
Sbjct: 284 -----QLAKEQFVG-----ADIMPE-------------------VEGSDHCPVWGQL-SC 313
Query: 318 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTED 377
I P +RYLP G QQ L L+K V ++ + +LP E+
Sbjct: 314 SLISSPKPPPFCTRYLPEFAGKQQKLSRFLVK--VDQKSAQSEQKNALPGSQEEEERREN 371
Query: 378 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE-NCRDSAN-VASHSTITQGSS 435
+ + +++ S +S + +G+ TKT+ + + N +A + T +
Sbjct: 372 LNPSGAANISGKKRS-------LTSDSVAPKGKKTKTVNASSKPQGNLLAFFKSKTTNIN 424
Query: 436 NHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLS 495
+P ++D A K ++ S+TDT ++D
Sbjct: 425 QCENPLNLDEAAKPPITEEV--------------------FSVTDTKSEGPELISDNLSQ 464
Query: 496 QEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 555
Q ++ H N T +S + D KKG + + W+
Sbjct: 465 QCSTAKTDQHLN----TKHSPPQPTV---------RQSDAKKG----------TSSVFWK 501
Query: 556 RIQQLMETSIPLC-KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ L P C K H EPCV R VKK GP G++FFVCAR +G ASNPEA C +F W
Sbjct: 502 SV--LHGPPAPPCCKVHGEPCVLRTVKKEGPNMGKQFFVCARPQGHASNPEARCNFFAWV 559
>gi|291239611|ref|XP_002739716.1| PREDICTED: apurinic/apyrimidinic endonuclease 2-like [Saccoglossus
kowalevskii]
Length = 541
Score = 251 bits (642), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 209/674 (31%), Positives = 304/674 (45%), Gaps = 190/674 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T+N+NG+R + L+ LLDS +ADIIC QETK+ R +L + +GY S+FS
Sbjct: 1 MRILTWNINGIR---AAKKPLKSLLDSLEADIICLQETKVTRDQLDEANAVVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG----LE 116
+ KGR GYSGVATFC + F+ P+AAEEG +G+L +S + G
Sbjct: 58 FS----KGRQGYSGVATFCH--NDFT------PLAAEEGLSGILSSSAGNEVVGNYGNQT 105
Query: 117 DFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFFHV 167
DF+ +EL +D+EGR +++ H ++ NVY PR + +D R+ FKL+F+ +
Sbjct: 106 DFTDEELRSLDNEGRALLSLHKIKSSAGKNEDVVIINVYCPRCEPDDQERLNFKLRFYSL 165
Query: 168 LQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLV--------- 209
LQ GR + VVGD+N++ AID CDA + K R W L
Sbjct: 166 LQTRCEALLSAGRHVIVVGDMNVSHKAIDHCDAAVNPTKP--RQWMDQFLCKLSDMGEII 223
Query: 210 ------------------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
+S GSF D FR HP+++EA+TCW + TGA Q NYG
Sbjct: 224 DKTSEVNHLIGAVGISPEKVSNYSQSTGSFVDTFRHFHPQQQEAFTCWRTTTGARQLNYG 283
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
TRID+IL + ++ V D +I +EGS
Sbjct: 284 TRIDYILAS---------------MSLQVELLDSII-----------------MPNVEGS 311
Query: 306 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 365
DH PV + L E + P+L+++++P G KQ K F
Sbjct: 312 DHCPVKVTLRCTCETSK-KIPTLSTKHMPEFAG---------------KQQKLSGFFTKA 355
Query: 366 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
ES+ T + DS I S + T ENC SA+
Sbjct: 356 AIESSHINTTPEI------------DSKI------------SHPKLTNHYENC--SASNL 389
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQL--SLKSFFHKRSNVSHDDNNSITDTSL 483
T + SN A KK K + ++ ++ FF K+S D+ SI
Sbjct: 390 LKRTSSANESN---------ATKKQKTTNRPKMHGNISDFFQKKSVSKTSDHPSIQ---- 436
Query: 484 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 543
S+++V IP+ + + SV G ++S H + G +
Sbjct: 437 -----------SKDQV---------IPL-ECAISVAPRAGEDAS---HSIPMQSG---MK 469
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
E+ VA +W+ + + PLC+GHKEPCV R V+K G GR+F+VC + EGP SN
Sbjct: 470 DEKKKVAA-KWKNMLSGPKPP-PLCRGHKEPCVLRTVRKTGLNQGRQFYVCTKPEGPKSN 527
Query: 604 PEANCGYFKWAFSK 617
P A C +F+WA K
Sbjct: 528 PNARCDFFQWADKK 541
>gi|390359970|ref|XP_784420.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Strongylocentrotus purpuratus]
Length = 621
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 206/696 (29%), Positives = 301/696 (43%), Gaps = 185/696 (26%)
Query: 1 MKIVTYNVNGLRQ-RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MK++T+N+NGLR +V L++L + DADIIC QETK+ R +L +DLV D Y ++F
Sbjct: 26 MKVLTWNINGLRACKVP----LKELFANLDADIICLQETKITRDQLDNDLVNVDDYNAYF 81
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL---- 115
S + K R+GYSGVAT+C+ PV AEEG TGLL + + G
Sbjct: 82 SFS----KKRSGYSGVATYCK--------NSTTPVIAEEGLTGLLSHGTKQSLIGCYGDQ 129
Query: 116 EDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+S +ELL ID+EGR +IT H G ++ NVY PRA ++ R FK++F++
Sbjct: 130 SAYSPEELLSIDAEGRTIITQHQYRKKDGALGDLVIINVYCPRAGDDNPERKSFKMRFYN 189
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNE---FRIWFRSML------ 208
+LQ G+ + +VGD+N + ID CD ++ K E R W L
Sbjct: 190 LLQLRAEAMLQAGKSVVIVGDVNASHRRIDHCDPSGNWGKFESHPSRKWLDGFLKDCSCP 249
Query: 209 --VESGGS---------------------------------------FFDVFRSKHPERR 227
E+ S F D FR HP+R
Sbjct: 250 ETAETSPSSQDDLQKSPQEEQELSDEERHVHDDSNIDVEDIPSKDNLFVDSFRYFHPKRE 309
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
A+TCW + TGA Q NYGTRID+I+ + + ECDI+ ++
Sbjct: 310 NAFTCWSTLTGARQTNYGTRIDYIIV------------NERLCVDELTECDIMPEF---- 353
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 345
EGSDH PV L G P H + ++ +P + G QQ L +
Sbjct: 354 ---------------EGSDHCPVKATLLGGCSPAEQLH---PMCAKLMPEVAGKQQKLSN 395
Query: 346 VLMKREVAKQGKSCKFSGSLPAESNSTGDTE-DCSENVDRSLNNYCDSGILQGVYCSSSN 404
K V+ K ++ E+ G + D + +SL V
Sbjct: 396 FFQK--VSPSKKFEMHEKAMSGENKQGGRSRLDIGKREGQSL-----------VGKPGKR 442
Query: 405 QESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF 464
+++G+ TKT N+AS +KKA Q L+
Sbjct: 443 AKTDGKVTKT-------GNIASF------------------FKKKADAKLRSQTDLE--I 475
Query: 465 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 524
H+ S+ S+ N + S + + + S Q + + IPV + G
Sbjct: 476 HQSSSSSY--NTRLMPNSQRSDGDIDNGSDFQNRLKD-------IPVDS------GISGS 520
Query: 525 NSSVCSHDQ--DEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVARVVK 581
+ +V Q E + F DK + L W+ + + S P+CKGH+EPC+ R VK
Sbjct: 521 DDAVSDASQIVKETSQELFEDKPKAKQQLASAWKNLFKGPPPS-PMCKGHQEPCLLRTVK 579
Query: 582 KPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 617
K GP G++FFVC R EG +NPEA C +F+W K
Sbjct: 580 KAGPNLGKQFFVCKRPEGHKNNPEARCNHFEWVSKK 615
>gi|402910299|ref|XP_003917823.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Papio
anubis]
Length = 518
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 178/653 (27%), Positives = 274/653 (41%), Gaps = 178/653 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++L+ DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILEELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVSLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN 381
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE------------------------------ 347
Query: 382 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPF 441
S +L+ +NQ ++ C++ A V
Sbjct: 348 ---------QSPLLEQSALQHNNQ-------TRVQTCQNKAQV----------------- 374
Query: 442 HVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 501
H R R S GQ +LKS+F N + + + ++L + PE
Sbjct: 375 HSTRPRPSQAGSGRGQKNLKSYFQPSPNCPQ------ASPDIELPSPPLMSALMTPKTPE 428
Query: 502 SHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLM 561
+ + + S +DEK+ + W+ +
Sbjct: 429 EEAVAKVV--------------KGRAKASEAKDEKEVRTSF-----------WKSVLA-G 462
Query: 562 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 463 PLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|195996619|ref|XP_002108178.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
gi|190588954|gb|EDV28976.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
Length = 527
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/644 (28%), Positives = 284/644 (44%), Gaps = 148/644 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+ +NVNG+R GS++ LL+ +ADI+CFQETKL R +L + +GY S+FS
Sbjct: 1 MKILCWNVNGIRTTAYGKGSIKDLLEFLNADILCFQETKLLRDQLDESIAFVEGYNSYFS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM---EGLED 117
+R G+ YSGVAT+C+ T+ A P+ EEG + + + + +
Sbjct: 61 FSR----GKVAYSGVATYCK-------TDCA-PIRVEEGLSNVWAAKNADRIGHYGNISK 108
Query: 118 FSKDELLKIDSEGRCVITDHG-----HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--- 169
F+ +EL +D+EGR ++T+H + ++ NVY PRAD E R+ FKL+F+ +LQ
Sbjct: 109 FNSEELSLLDAEGRAILTEHKTDFGRNVVVINVYCPRADPEKPERLNFKLKFYELLQERA 168
Query: 170 ------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI-WFRSML------------VE 210
G+ + +VGD+N + ID C+ +N W ++L +
Sbjct: 169 EALLIAGKHVVIVGDVNTSHKPIDHCEPDIKAMQNSPSCHWLDNLLIPLDSEGKVDSSIS 228
Query: 211 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
+G F D FR +P R+EA+TCW + T A + NYGTRID+I+
Sbjct: 229 AGKKFIDSFRYFYPRRKEAFTCWSTVTSARKTNYGTRIDYIIA----------------- 271
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
+ D+++ Y + + +EGSDH P+Y L P P L +
Sbjct: 272 -----DKDLVVSYFA---------ESQIQPEIEGSDHCPIYADLKFTIN-PSDKLPWLCT 316
Query: 331 RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYC 390
+Y+ Q L L K GK
Sbjct: 317 KYMSEFSKKQSKLTEFL------KLGK--------------------------------- 337
Query: 391 DSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA 450
S + SE T I +D+ NV + + + P ++D R K+
Sbjct: 338 -----------ESTERSEPTNTTRINKMKDT-NVTVDTKGSNQKRDSTCPVNIDVKRSKS 385
Query: 451 KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIP 510
++ L L FF K SN +H N SI ++ ++E E+
Sbjct: 386 SSNKSCNL-LNYFFTKPSN-THKSNTSIIQPTV------------EKEPLEA-------- 423
Query: 511 VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKG 570
+ D + ++ +N+S ++ +++K+ + + + W+ I IPLC G
Sbjct: 424 IKDKKDNNNDSRELNNSQQNNKENKKEDEAAMVANDKSETTKAWKSILS-GPPPIPLCSG 482
Query: 571 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
HK P V R VKK GP GRRF+VC EG NP A C +F+WA
Sbjct: 483 HKVPSVMRTVKKSGPNQGRRFYVCTLPEGRRGNPNARCNFFQWA 526
>gi|241745915|ref|XP_002405543.1| ap endonuclease, putative [Ixodes scapularis]
gi|215505857|gb|EEC15351.1| ap endonuclease, putative [Ixodes scapularis]
Length = 507
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 199/641 (31%), Positives = 269/641 (41%), Gaps = 166/641 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR S ++ LL DADIICFQETK R L+ + +GY +FFS
Sbjct: 1 MKLVSWNINGLR---SFKAGVKGLLAELDADIICFQETKATRDVLEETSAIVEGYSAFFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL----E 116
R ++GYSGVATFC+ + P AAEEG T L +SG G
Sbjct: 58 FPRY----QSGYSGVATFCK--------DAFRPFAAEEGLTELWTSSGCPDSVGFYGDTS 105
Query: 117 DFSKDELLKIDSEGRCVITDH--------GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
DF + +D EGR V+T H + NVY PRAD E R Q KL F+ +L
Sbjct: 106 DFDSKNISSVDGEGRTVLTLHHVRCGDKLKRIAVINVYCPRADPEKPERGQIKLDFYELL 165
Query: 169 Q---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS--F 215
+ G + ++GDLN + ID CD DF N RIW L S + F
Sbjct: 166 KRRAMTLLRNGLEVIILGDLNTSHRKIDHCDPSDDEDFDSNPGRIWLSQFLENSTTNTCF 225
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D +R HP +A+TCW + GA Q NYGTRID++LC+ P L +
Sbjct: 226 HDTYRRLHPTTEKAFTCWNTRLGARQTNYGTRIDYVLCS-PAL------------VPFLQ 272
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV---YMCLGEVPEIPQHSTPSLASRY 332
DIL + GSDH PV + C G +P PS+A+++
Sbjct: 273 TADIL-------------------PHVLGSDHCPVEAIFRCDG----VPSPRCPSMATKF 309
Query: 333 LPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDS 392
P G QQ L + L K+ GD E+ DR
Sbjct: 310 WPEFAGRQQRLSAFLSKKP---------------------GDQEEAER--DR-------- 338
Query: 393 GILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKK 452
Q SEG ++C S + + + S N AR K
Sbjct: 339 ----------RPQSSEG----WEDSCAVSVELRNGGPPVKKSKNV-------PARTTDKS 377
Query: 453 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 512
+ Q +L FF V+++ TD +S++ SH + +
Sbjct: 378 HKTAQSTLNRFF--------------------VSSNKTDVGVSKQSSRSSHGQAK---LG 414
Query: 513 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHK 572
D V VNS E KR +D W+ + + P CKGH
Sbjct: 415 DCGLPV-----VNSGTNVSGAPEPAPKRAVD------VACAWKSLLKGPPVPPP-CKGHG 462
Query: 573 EPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
E CV R VKKPGP GR+FFVCAR G + + A+C +F+W
Sbjct: 463 EQCVLRTVKKPGPNLGRQFFVCARPTGKSGDVNASCEFFQW 503
>gi|156398432|ref|XP_001638192.1| predicted protein [Nematostella vectensis]
gi|156225311|gb|EDO46129.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 199/381 (52%), Gaps = 76/381 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NGLR V++ L+ L+S +AD++CFQETK+ R L+ MADGY +FFS
Sbjct: 1 MKILTWNINGLRA-VTREKKLKDFLNSLEADVMCFQETKITRDMLEEATCMADGYTAFFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL-EDFS 119
+R ++GYSGVATFC+ + P+AAEEG T L S G E+F+
Sbjct: 60 FSRV----KSGYSGVATFCK--------DSTTPLAAEEGLTSQLSASPDIGFYGDDEEFT 107
Query: 120 KDELLKIDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ----- 169
D+L ++DSEGR ++T+H G ++ NVY PRAD E+ RIQFKL+F +L
Sbjct: 108 SDQLSRLDSEGRTILTEHTLSSGGTVVIINVYCPRADMENEDRIQFKLEFHRLLSKRVKA 167
Query: 170 ----GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE------------- 210
G+ + V+GD+N A ID C+ DF+ R W +LV
Sbjct: 168 LLNSGKHVIVLGDINAAHKPIDHCNPCKYEDFSSFPGRAWLDELLVSLPLPDNSCDSSWK 227
Query: 211 -SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 269
G D FR HP +REAYT W ++TGA Q NYGTRID+IL P L Q+ F
Sbjct: 228 CVSGLLIDSFRYFHPLQREAYTNWSTSTGARQTNYGTRIDYILVDPPLLQQE-------F 280
Query: 270 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 329
V C + +EGSDH PV +C + + + TP L
Sbjct: 281 VDCVIRP------------------------EVEGSDHCPV-VCTLKNRFLAANKTPLLC 315
Query: 330 SRYLPIIRGVQQTLVSVLMKR 350
++++P G QQ LVS K+
Sbjct: 316 TKFMPEFSGKQQKLVSFFTKK 336
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 533 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
+D K + L ++ W+ I + PLC GH EP V R VKK GP +GR+F+
Sbjct: 425 EDTKSNQNMLLNPEPYSSVSAWKSILK-GPPPAPLCPGHNEPSVLRTVKKKGPNYGRQFY 483
Query: 593 VCARAEGPASNPEANCGYFKW 613
CAR EG ASN EA C +FKW
Sbjct: 484 CCARPEGHASNKEARCNFFKW 504
>gi|41055919|ref|NP_956440.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Danio rerio]
gi|28278715|gb|AAH44527.1| Zgc:55889 [Danio rerio]
gi|182890762|gb|AAI65311.1| Zgc:55889 protein [Danio rerio]
Length = 558
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 154/418 (36%), Positives = 203/418 (48%), Gaps = 99/418 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G+ I +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DAATPFLAEEGLTGLLSNQGAVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +ELL +D+EGR VIT H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEELLALDNEGRAVITQH-HFIGQDGLQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE------ 210
G + ++GD+N + ID CD PD F N R W L E
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAENSE 222
Query: 211 ----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
SGG F D FR HP+R A+TCW + TGA Q NYGTRID+I
Sbjct: 223 NGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCWSTLTGARQTNYGTRIDYI--- 279
Query: 255 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+H+ V DI+ + +EGSDH PV+ L
Sbjct: 280 ---------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWAQL 311
Query: 315 G-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 371
+ P+ P + +R++P G QQ L L K KQ S SLP ++
Sbjct: 312 SCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLFKIP-EKQNISNSSEKSLPGSQDA 366
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 515 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 553
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKAVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 614 A 614
Sbjct: 554 V 554
>gi|167555152|ref|NP_001107928.1| uncharacterized protein LOC797209 [Danio rerio]
gi|160773435|gb|AAI55114.1| LOC797209 protein [Danio rerio]
Length = 558
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 201/418 (48%), Gaps = 99/418 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NG+R + ++K+LDSFDADIIC QETK+ R L + DGY S+FS
Sbjct: 1 MKIVTWNINGIRTFKN---GIKKILDSFDADIICVQETKVTRDLLDEKTAIVDGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVAT+C+ + A P AEEG TGLL G I +
Sbjct: 58 FSR----GRSGYSGVATYCK--------DTATPFLAEEGLTGLLSNQGEVIGCYGDQVEL 105
Query: 119 SKDELLKIDSEGRCVITDHGHFI---------LFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +E L +D+EGR VI+ H HFI + NVY PRAD + R +FKLQF+ +LQ
Sbjct: 106 TSEEFLALDNEGRAVISQH-HFIGQDGPQKLTVINVYCPRADPDKPERKEFKLQFYRLLQ 164
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAGPD----FAKNEFRIWFRSMLVE------ 210
G + ++GD+N + ID CD PD F N R W L E
Sbjct: 165 CRAEAILSSGSHVIILGDVNTSHRPIDHCD--PDDVDNFEDNPGRKWLDQFLFETAENSE 222
Query: 211 ----------------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
SGG F D FR HP+R A TCW + TGA Q NYGTRID+I
Sbjct: 223 NGNAADEPAEDFQESASGGKFVDSFRYFHPKRSNALTCWSTLTGARQTNYGTRIDYI--- 279
Query: 255 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+H+ V DI+ + +EGSDH PV+ L
Sbjct: 280 ---------FSNHSLVKTFFIGVDIMPE-------------------VEGSDHCPVWAQL 311
Query: 315 G-EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 371
+ P+ P + +R++P G QQ L L+K KQ S SLP ++
Sbjct: 312 SCTLQSSPR--CPPVCTRHMPEFIGRQQKLSRFLVKIP-EKQNISNGSEKSLPGSQDA 366
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 22/121 (18%)
Query: 515 SCSVHELHGVNSSVCSHD-QDEKKGKRFLDKERNNVALLE-------------------- 553
SC G NS +C D Q++ + L+ E N +E
Sbjct: 435 SCQDGPGTGSNSKICPSDLQNDMNVSKLLEMETENQDEVEGESTSMDKPNDCKKGPCTGF 494
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
W+ + PLCK H EPCV R VKK GP GR+FFVCAR +G ASNP+A C +F W
Sbjct: 495 WKSVLH-GPPQPPLCKSHNEPCVLRTVKKAGPNLGRQFFVCARPQGHASNPQARCNFFAW 553
Query: 614 A 614
Sbjct: 554 V 554
>gi|449662096|ref|XP_002160726.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Hydra
magnipapillata]
Length = 516
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 187/640 (29%), Positives = 267/640 (41%), Gaps = 153/640 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R S+ SL LLDS +ADIIC QETK+ R L L +GY +FFS
Sbjct: 1 MKILTWNINGIRA-TSRNHSLGNLLDSLEADIICLQETKITRNLLTDHLANVEGYYAFFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM---EGLED 117
+ K +TGYSGVATFC+ + P+AAEEG TGL + +++ +
Sbjct: 60 FS----KRKTGYSGVATFCK--------KTLCPIAAEEGLTGLFTSKMEQVVGFYNNPPE 107
Query: 118 FSKDELLKIDSEGRCVITDH-----GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--- 169
+S + L +DSEGRC+IT+H + NVY PRAD E+ R +K+ F+ +LQ
Sbjct: 108 YSDELLRSLDSEGRCMITEHVTSDGQRLCIINVYCPRADVEEKERFHYKMCFYRLLQMRI 167
Query: 170 ------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF------- 216
R I VVGDLN++ ID CD DF + R W S++ G F
Sbjct: 168 ISLMREKRNIIVVGDLNVSHKRIDSCDPCEDFEDSPARKWLDSIIDFKGSESFSEKNVNN 227
Query: 217 ---DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
D FR HP + AYTCW + T A + N+GTRID IL H T
Sbjct: 228 FLVDTFRIFHPNEQNAYTCWNTQTRARETNFGTRIDFILA------------DHQLCTVL 275
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 333
N C IL D ++GSDH PV + + + P + ++
Sbjct: 276 TN-CVILAD-------------------VQGSDHCPVVADFNILLK-ASNLIPKTCAAFM 314
Query: 334 PIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSG 393
P I G Q + S F S ES+ G + R LN+ +S
Sbjct: 315 PEIFGKQSDIKS---------------FFSSKRFESDREG--------IKRKLNDSTESR 351
Query: 394 ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKS 453
Y N + + K + +++ +HS S+H+ + + ++ S
Sbjct: 352 F----YKKKKNVDQDFSIIKYFK----ASDTENHS-----RSSHVEISNFQSSTEEISCS 398
Query: 454 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 513
+L L L N S + I D S +V + S + V K T+
Sbjct: 399 RLSNLELS------HNSSSSNFAYIIDNSNMNYYAVKEASSFESAVLYESSMKQKTENTN 452
Query: 514 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKE 573
L G S+ H EK R + K+ NN
Sbjct: 453 KEIWKKILKGPESTPLCHGHKEKAVLRTVKKQGNN------------------------- 487
Query: 574 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
FGR+F+ C++ G +SN A CG+F W
Sbjct: 488 -------------FGRQFYACSKPVGSSSNKNAGCGFFVW 514
>gi|302820700|ref|XP_002992016.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
gi|300140138|gb|EFJ06865.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
Length = 379
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 136/222 (61%), Gaps = 25/222 (11%)
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ--FFHVL-QGR 171
LE F++ ELL +D+EGRC++TDHG+F+LFN+YGP D R F LQ +L QGR
Sbjct: 169 LEGFTRQELLDLDNEGRCIVTDHGYFVLFNIYGPNVGCGDVERQDFMLQCRLESILKQGR 228
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF---FDVFRSKHPERRE 228
RI +VGDLNI+P I+ CD GP+F N R WFRS+LV F F F K E
Sbjct: 229 RIIIVGDLNISPYPINSCDPGPEFDTNPSRQWFRSLLVSEVVRFQTRFACFILK-----E 283
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
AYTCW +GAE+FNYG+RIDH+L AGPC H CDIL+++KR K
Sbjct: 284 AYTCWSQASGAEEFNYGSRIDHVLIAGPC-------AGHYM-------CDILLEFKRAKL 329
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
PRW GG S +L+GSDHAPV + +P IP H P LA+
Sbjct: 330 DTLPRWSGGRSLKLDGSDHAPVILQFKHLPSIPPHEAPQLAA 371
>gi|55741922|ref|NP_001006804.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
gi|49903339|gb|AAH76676.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
Length = 517
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 149/412 (36%), Positives = 205/412 (49%), Gaps = 86/412 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NG+R ++ G L++ LDS DADIIC QETK+ R L + +GY S+FS
Sbjct: 1 MKIVSWNINGIR--ATRVG-LKETLDSLDADIICLQETKVTRDLLDEPSAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDF 118
+R GR+GYSGVATFC+ SST P AAEEG +G+L T E+F
Sbjct: 58 FSR----GRSGYSGVATFCK-----SST---TPWAAEEGLSGMLCNHTGSIGCYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++EL +D EGR V+T H + NVY PRAD E R +KL+F+ +LQ
Sbjct: 106 LEEELQSLDQEGRAVLTQHRIRNCEGKEETLTVINVYCPRADPEKPERKTYKLRFYRLLQ 165
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE-------- 210
G + ++GD+N + +D CD F +N R W L +
Sbjct: 166 TRAEAILQKGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPVPSQKGD 225
Query: 211 -------SGGS--FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
SGGS F+D FR HP +R A+TCW S +GA Q NYGTRID+IL
Sbjct: 226 SETGTPPSGGSGRFYDSFRYFHPTQRNAFTCWCSASGARQTNYGTRIDYIL-------GN 278
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+L F+ D +I +EGSDH PV + P I
Sbjct: 279 SELVEREFL-------DSII-----------------MPEVEGSDHCPVKAVMKCRP-IA 313
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 373
+ P L ++YLP G QQ L+ LMK+E + + S L ++S++ G
Sbjct: 314 ANKCPPLCTKYLPEFAGRQQKLLQFLMKKENTSGNATEESSELLGSQSSAEG 365
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 618
P CKGH EPCV R VKK GP GR+F+VCAR EG ++NP+A C +F W K+
Sbjct: 461 PNCKGHGEPCVLRTVKKAGPNCGRQFYVCARPEGHSTNPQARCNFFLWLTKKA 513
>gi|358058458|dbj|GAA95421.1| hypothetical protein E5Q_02075 [Mixia osmundae IAM 14324]
Length = 1197
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 192/685 (28%), Positives = 285/685 (41%), Gaps = 127/685 (18%)
Query: 1 MKIVTYNVNGLRQRVSQF-------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
M+++T+N+NG++ + Q+ G+ ++LD DI+C QETK+ + +++ + D
Sbjct: 1 MRLITWNINGIKT-LPQYKPWNECKGNYGQMLDLLGGDIVCLQETKITKDKIERSMACPD 59
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
Y++FFS K GYSG A + + +P+ AEEG TGL SG K +
Sbjct: 60 DYDAFFSSY--CRKPPKGYSGTAIYTK-------RAATVPLQAEEGLTGL-SLSGEKDRD 109
Query: 114 GLE--------------DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
L + S E+ IDSEGR + D G F+L NVY P + D R+
Sbjct: 110 DLARQDRIGGYPTPAAVELSSFEMRDIDSEGRTTVVDLGLFVLINVYCPNETNSD--RLT 167
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP--------DFAKNEFRI 202
FK+ F H+L GR + VVGDLNI ID CD DF + R
Sbjct: 168 FKMAFNHLLDERVRQLIKLGREVIVVGDLNICAQTIDHCDPEKRKAEQNLDDFQAHPARA 227
Query: 203 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--Q 260
W S + + G D R HP R YT W + A NYGTR+D+IL L +
Sbjct: 228 WL-SAFIGASGVMIDSTRFFHPTRTNMYTHWETKINARVTNYGTRLDYILVTPGLLPWIK 286
Query: 261 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 320
D+Q+H + H C + ID+ N G + E + P + VP+
Sbjct: 287 AADIQAHVVGSDH---CPVFIDFHPEISLN----DGTKQSLWEAVN--PGRERVDPVPDP 337
Query: 321 PQHSTPSLASRYLPIIRGVQQTLVSVLMKR--EVAKQGKSCKFSGSLPA-ESNSTGDTED 377
P+ +A+RY G Q L + +K+ E Q ++ LPA E T
Sbjct: 338 PR-----MAARYYNSFAGTQSLLKTFFVKKKDESPVQARTVT---PLPAPEMRRDASTSR 389
Query: 378 CSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH--------ST 429
SE+ ++ L + + + + E T IE+ D +A H ST
Sbjct: 390 VSES--------PEAPTLASAFATIRSSKPERHATIMIEDDDDDDEIAEHPQPRSRSTST 441
Query: 430 ITQGSSNHIS--PFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSL 483
T SS P +R + K QL GQ +L SFF S
Sbjct: 442 ATAQSSRPPDKRPRSDSASRSQPPKKQLNVRNGQSTLASFF-------------ADPVSG 488
Query: 484 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 543
+DT + VP S + P SCS +++ +R
Sbjct: 489 KTRRPESDTKKRRSTVPGSQSENLDEP----SCSASTSQRASATASETAAQADGYERLPL 544
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPAS- 602
++ + A +W + ++PLCK HKEPC V KPGP GR+F++C+R G
Sbjct: 545 QDSDPQAASQWNAL--FSPLAVPLCKMHKEPCTLWTVNKPGPNKGRKFYLCSRPVGQGHE 602
Query: 603 -----------NPEANCGYFKWAFS 616
NP+ C +F+W+ S
Sbjct: 603 EAASKNKNVILNPDYRCNHFEWSQS 627
>gi|395546227|ref|XP_003774991.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Sarcophilus
harrisii]
Length = 548
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/375 (35%), Positives = 187/375 (49%), Gaps = 74/375 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++N+NG+R+ +LR+LLDS AD+ C QET++ R L+ L + +GY S+FS
Sbjct: 1 MRLVSWNINGIRRSPE---ALRRLLDSLGADVTCLQETRVTRDLLEEPLAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R GR+GYSGVATFC+ A P AAEEG T LL + E+F
Sbjct: 58 FSR----GRSGYSGVATFCKNN--------ATPGAAEEGLTNLLTNHEGAVGAYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH------GH---FILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++DEL +DSEGR V+T H GH + NVY P AD + R+ +KL+F+ +LQ
Sbjct: 106 TEDELRALDSEGRAVLTQHQIRTSDGHEKTLTIINVYCPHADPDKPERLTYKLRFYRLLQ 165
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAGPD---FAKNEFRIWFRSMLVESGGS--- 214
G + ++GD+N + +D CD PD F +N R W L G
Sbjct: 166 LRAEALLRTGSHVIILGDVNTSHQPLDHCDP-PDLACFEENPGRQWLTQFLWRPDGENGL 224
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
F D FR HP + A+TCW + TGA NYGTR+D+IL
Sbjct: 225 FVDSFRHFHPTKVGAFTCWSTATGARLTNYGTRLDYILG--------------------- 263
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
+ +L +++ + +EGSDH PV L IP P L +RYLP
Sbjct: 264 DRALVLGEFE----------DSFLMPEVEGSDHCPVGATL-RAELIPAPRCPPLCTRYLP 312
Query: 335 IIRGVQQTLVSVLMK 349
G QQ L L+K
Sbjct: 313 EFAGRQQKLSRFLVK 327
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLCKGH EPCV R V+K GP FGR+F+VC+R G + NP A C +F W
Sbjct: 427 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHSGNPVARCDFFLW 474
>gi|148227204|ref|NP_001086779.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
laevis]
gi|50415222|gb|AAH77433.1| Apex2-prov protein [Xenopus laevis]
Length = 517
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/390 (35%), Positives = 190/390 (48%), Gaps = 86/390 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NG+R ++ G L++ LDS DADIIC QETK+ R L + +GY S+FS
Sbjct: 1 MKIVSWNINGIR--ATRVG-LKETLDSLDADIICLQETKVTRDLLDEPSAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDF 118
+R R+GYSGVATFC+ SST P AAEEG +G+ T E F
Sbjct: 58 FSRV----RSGYSGVATFCK-----SST---TPQAAEEGLSGVFCNRTGSVGCYGNTEQF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++EL +D EGR V+T H + NVY PRAD E R +KL+F+H+LQ
Sbjct: 106 LEEELQSLDQEGRAVLTQHRILNCEDKEETLTVINVYCPRADPEKPERKTYKLRFYHLLQ 165
Query: 170 GR---------RIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE-------- 210
R + ++GD+N + +D CD F +N R W L +
Sbjct: 166 TRAEAILQNGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPIPSQKGD 225
Query: 211 ---------SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G F+D FR HP ++ A+TCW S +GA Q NYGTRID+IL
Sbjct: 226 SETVMPPSAGSGLFYDSFRYFHPTQKNAFTCWCSASGARQTNYGTRIDYIL-------GN 278
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+L F+ D +I +EGSDH PV + P I
Sbjct: 279 RELVESEFL-------DSVI-----------------MPEVEGSDHCPVKAFMKCQP-IA 313
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
+ P L ++YLP G QQ L+ L+K+E
Sbjct: 314 ANKCPPLCTKYLPEFAGRQQKLLQFLVKKE 343
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 618
P CKGH EPCV R VKK GP GR+F+VCAR EG +SNP+A C +F W K+
Sbjct: 461 PNCKGHSEPCVLRTVKKAGPNCGRQFYVCARPEGHSSNPQARCNFFLWLTKKA 513
>gi|323508160|emb|CBQ68031.1| related to APN2-AP endonuclease, exonuclease III homolog
[Sporisorium reilianum SRZ2]
Length = 737
Score = 198 bits (504), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 192/730 (26%), Positives = 285/730 (39%), Gaps = 170/730 (23%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLEHLGADIACFQETKMTRKQLTEPMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+FF+ GYSG T+ + V++P+ AE+G TG L
Sbjct: 61 NAFFNFHPAK-----GYSGTVTYVK-------KSVSIPLKAEQGITGRLPVTNVSTNPLI 108
Query: 105 --ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PSEPIGCIPADTRDDVEPQIWNALDDEGRCVVLDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFR 205
++ L GR++ +VGD+NI ID CDA G D F ++ R WF+
Sbjct: 167 TYYQGLAERAHRLIQAGRQVMIVGDMNIIRDPIDHCDAEQSMKEYGWDHFHQHPARSWFQ 226
Query: 206 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 263
+ L G F DV R HPER++ +TCW + A NYG R+D+ L L + D
Sbjct: 227 TFLAPHG-KFHDVGRLYHPERKKMFTCWNTLIDARPANYGVRLDYTLVTEGLLDWIKGAD 285
Query: 264 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH 323
+Q + + H C I +D + R G +L H G +P
Sbjct: 286 IQPDVYGSDH---CPIYVDL------HDERQIDGKMVKLADLMH-------GGADRLP-- 327
Query: 324 STPSLASRYLPIIRGVQQTLVSVL-MKREVAKQGKSCKFSG-SLPAESNSTGDTEDCSEN 381
P+LA+ + G Q+ L S ++ KSC +G SL + +T + + N
Sbjct: 328 --PALAACHYDEFSGKQRKLASFFGASKKAVPTTKSCSPAGTSLADQGKTTAEVKSTLSN 385
Query: 382 VDRSLNNYCDSGILQGVYCSSSNQESEGEFTK-------------TIENCRDSANVASHS 428
S + D G +Q S++ ESEG IE +N A +
Sbjct: 386 -GSSTKDGTDGGAIQ-TSTSTAGIESEGSSLADALFSLHSQQEGLNIEMAASQSNAAPAT 443
Query: 429 TITQGSSNHISPFHV-----------------------------------------DRAR 447
T + + + P D +
Sbjct: 444 TSSTPAVEPVPPASAPVATTAVSTPSPTKAPASQPSPSGRRDSALAKRAPAATKGKDSGK 503
Query: 448 KKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSVTDTS 493
K S GQ SL+SFF K ++S + S VN+SV T
Sbjct: 504 AKNGASLKGQTSLQSFFAKPKSTSSTASSEPTKVMDLSQETGGSKAPPPAPVNDSVAGT- 562
Query: 494 LSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 553
+ ++P + + D C HE ++ + ++ R A L
Sbjct: 563 VPNTDIPAASYDETD----DAICDFHE--ATTTTFPAPPAEQSAADRV-------GASLA 609
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------SN 603
W I PLC+ H EPC A V KPGP GR+F++C R GP N
Sbjct: 610 WGAI--FSPIPAPLCRSHSEPCRAWTVNKPGPNHGRKFWLCNRPVGPGYEKSGRAKGDVN 667
Query: 604 PEANCGYFKW 613
PE C +F W
Sbjct: 668 PEFRCNFFLW 677
>gi|327261945|ref|XP_003215787.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Anolis
carolinensis]
Length = 530
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 138/379 (36%), Positives = 184/379 (48%), Gaps = 73/379 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR L+ LLD+ AD+IC QETK+ R L+ L + +GY ++FS
Sbjct: 1 MRLLSWNVNGLRAGAGAA-GLKPLLDALGADVICLQETKITRDLLEEPLAVVEGYNAYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+RT R+GYSGVATFC+ A P AAEEG +GL I DF
Sbjct: 60 FSRT----RSGYSGVATFCKA--------TATPEAAEEGLSGLWTKHEGAIGCYGAPGDF 107
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
+ +EL +DSEGR VIT H + NVY PRAD E R +FKL+F+H+LQ
Sbjct: 108 TTEELQALDSEGRAVITRHRICTSEQQETTLTVVNVYCPRADPEKPERGEFKLRFYHLLQ 167
Query: 170 GR---------RIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGS---- 214
R + ++GD+N A ID CD G F ++ R W L E G
Sbjct: 168 ARAEALLRAGGHVVIMGDINTAHKPIDHCDPGDLESFQEHPGRNWLDGFLWEPGKESPHG 227
Query: 215 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 272
F D FR HP ++EAYTCW + TG+ NYGTRID+IL
Sbjct: 228 ELFVDTFRFLHPTQKEAYTCWCNVTGSRHLNYGTRIDYIL-------------------- 267
Query: 273 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRY 332
+ L + K + + + GSDH PV L V + P L +R+
Sbjct: 268 -ADRALALSELK----------EAQLRPEVFGSDHCPVQAVLKSVC-LGAPRCPPLCTRF 315
Query: 333 LPIIRGVQQTLVSVLMKRE 351
LP G QQ L L+K E
Sbjct: 316 LPEFAGTQQKLSRFLVKVE 334
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H EPCV R VKKPG GRRF+VCAR G +S+P A C +F WA
Sbjct: 477 PLCKAHGEPCVLRTVKKPGANCGRRFYVCARPLGKSSDPRARCDFFLWA 525
>gi|354503214|ref|XP_003513676.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Cricetulus griseus]
gi|344248357|gb|EGW04461.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 191/386 (49%), Gaps = 82/386 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+R+ G LR +L+ DADI+CFQETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRRLQSLGCQVPSNCSTDLRHILEELDADIVCFQETKVTRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R+ + GYSGVATFC+ + A PVAAEEG +GL +
Sbjct: 62 VEGYNSYFSFSRS----QRGYSGVATFCK--------DSATPVAAEEGLSGLFANLNGNV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR V+T H L NVY P AD R+ F
Sbjct: 110 GCYGNMTEFTQEQLRALDSEGRAVLTQHKIHTWEGKEKPLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML- 208
K+ F+ +LQ G + ++GDLN A ID CDAG F ++ R W +L
Sbjct: 170 KMHFYRLLQIRAEALLAAGCHVIILGDLNTAHRPIDHCDAGSLECFEEDPGRKWLDGLLS 229
Query: 209 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
++G G F D +R +P++ A+TCW TGA FNYG R+D++L
Sbjct: 230 DLECQTGSHIGPFMDSYRYFYPKQEGAFTCWSVITGARHFNYGARLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + ++GSDH PV L + +P
Sbjct: 280 ------------GDRTLIIDTFQ---------AAFLLPEVKGSDHCPVGAVL-NMSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLM 348
P+L +R+LP G Q ++ L+
Sbjct: 318 KQCPALCTRFLPEFSGTQLKILGFLV 343
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
+++ V L W+ + + PLC+GHKEPCV R+VKKPGP GR F++CAR +GP +
Sbjct: 445 EDKKVVQTLFWKSVLS-GPSPAPLCRGHKEPCVMRIVKKPGPNMGRHFYICARPQGPPDD 503
Query: 604 PEANCGYFKW 613
P ++C +F W
Sbjct: 504 PSSSCNFFLW 513
>gi|126342732|ref|XP_001367276.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Monodelphis domestica]
Length = 482
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 130/374 (34%), Positives = 182/374 (48%), Gaps = 72/374 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++N+NG+R+ +LR LLDS AD+ C QET++ R L+ L + +GY S+FS
Sbjct: 1 MRLVSWNINGIRRSPE---ALRHLLDSLGADVTCLQETRVTRDLLEEPLAIVEGYSSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDF 118
+R R+GYSGVATFC+ A P AAEEG T LL T + E+F
Sbjct: 58 FSRC----RSGYSGVATFCKNN--------ATPGAAEEGLTSLLTTHQGAVGSYGNTEEF 105
Query: 119 SKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
++DEL +DSEGR V+T H + NVY P AD E R+ +KL+F+ +LQ
Sbjct: 106 TEDELRSLDSEGRAVLTQHQIRTSDGQEKTLTIMNVYCPHADPEKPERLTYKLRFYRLLQ 165
Query: 170 ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVES---GGSF 215
G + ++GD+N + +D CD F +N R W L + G F
Sbjct: 166 LRAEALLQAGSHVIILGDVNTSHRPLDHCDPADLECFEENPGRQWLTEFLWQPDRDSGLF 225
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D FR HP A+TCW + TGA NYGTR+D+IL +
Sbjct: 226 VDSFRHFHPTTVGAFTCWSTATGARLTNYGTRLDYILG---------------------D 264
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 335
+L +++ + +EGSDH P+ L IP P L +RYLP
Sbjct: 265 RALVLEEFE----------DSFLMPEVEGSDHCPIGATL-RTELIPAPRCPPLCTRYLPE 313
Query: 336 IRGVQQTLVSVLMK 349
G QQ L L+K
Sbjct: 314 FAGRQQKLSRFLIK 327
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKS 618
PLCKGH EPCV R V+K GP FGR+F+VC+R G SNP A C +F W K+
Sbjct: 426 PLCKGHGEPCVLRTVRKAGPNFGRQFYVCSRPVGHISNPAARCDFFLWVSGKT 478
>gi|391340727|ref|XP_003744688.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Metaseiulus occidentalis]
Length = 453
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 134/379 (35%), Positives = 178/379 (46%), Gaps = 78/379 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVT+N+NGLR + G LR LDSF+ADIIC QETK R L+ DL GY S+F+
Sbjct: 1 MKIVTWNINGLR---TFKGVLRSTLDSFNADIICVQETKTNRSTLEEDLACVPGYNSYFA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
R TGYSGVAT+C ++ P AA E E+ G M+ L D
Sbjct: 58 FPRL----LTGYSGVATYC--------SDNVRPFAANESLLAC-ESDGINEMDELTDVPD 104
Query: 118 -------FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFK 161
S+ E+L +DSEGR ++T ++FN+Y PR D + R QFK
Sbjct: 105 PLEENAFLSQKEILNVDSEGRTLVTSFNFLDGAGQTKQLLVFNLYCPRNDPDRPERAQFK 164
Query: 162 LQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESG 212
F +L+ G + + GD+NI+ ID CD G DF ++ RIW ML +
Sbjct: 165 YNFNAMLEHQAVCLVKKGFHVILTGDMNISHKRIDNCDPGEDFEESPARIWLTKMLDQQN 224
Query: 213 GSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
+F DVFR HP+ +E YTCW S A N+GTRID+I+C L
Sbjct: 225 DVYFVDVFRHMHPDAKEQYTCWNSQKSARLTNFGTRIDYIICDSKLLE------------ 272
Query: 272 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 331
+ CDI D + GSDH PV L ++ I +R
Sbjct: 273 -YFESCDIHPD-------------------VMGSDHCPVSAVL-KLNLISNEKLIRKCTR 311
Query: 332 YLPIIRGVQQTLVSVLMKR 350
P G Q +L S L+K+
Sbjct: 312 NWPEFSGKQTSLSSFLVKK 330
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLC GH E V R+VKK G G+RF+ CAR EG + N EA C +F W
Sbjct: 405 PLCSGHGELSVLRIVKKDGINKGKRFYCCARPEGRSDNKEARCSFFVW 452
>gi|348551967|ref|XP_003461800.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Cavia
porcellus]
Length = 514
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/390 (33%), Positives = 190/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLR--------QRVSQFG--SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R Q + F ++++ L+ ADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGAVCQESNNFANVTMKRTLEELAADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FSC+R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 VVEGYNSYFSCSR----NRSGYSGVATFCK--------DSATPVAAEEGLSGLLATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY PR D E R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPRVDPEKPERLT 169
Query: 160 FKLQFFHVLQGR---------RIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F +LQ R + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 FKMRFCRLLQNRAEALLAAGSHVIILGDLNTAHRRIDHCDAINLKYFEEDPARKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G+F D +R P++ A+TCW +GA NYG+R+D++L G +
Sbjct: 230 NNIGCQSRSPVGTFIDTYRYFQPQQEGAFTCWSVVSGARHHNYGSRLDYVL--GDRTLVR 287
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
LQS +F+ V GSDH PV L V +P
Sbjct: 288 DTLQS-SFLLPEVM----------------------------GSDHCPVGAVLN-VSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+ P G Q +V L+ E
Sbjct: 318 AKHPPPLCTRFFPEFAGTQLKIVHFLVPLE 347
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC+GH+EPC+ R VKKPGP GRRF++CAR +GP S+P + C +F+W+
Sbjct: 462 MPLCRGHREPCIMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQWS 511
>gi|443713485|gb|ELU06313.1| hypothetical protein CAPTEDRAFT_176829 [Capitella teleta]
Length = 486
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 187/386 (48%), Gaps = 77/386 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R + L +L ++ DADIIC QETK+ R L + +G+ ++FS
Sbjct: 1 MKILTWNINGIR---ASKVPLPQLFETLDADIICIQETKITRDMLDEATAIVEGFNAYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED--- 117
+T R+GYSGVAT+ + P AEEG TG+ E ++ G
Sbjct: 58 FCKT----RSGYSGVATYVK--------NSCTPTKAEEGLTGVHEADKAEHSIGFHGDYS 105
Query: 118 -FSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRA--DSEDTV-RIQFKLQF 164
+++DE+ +D+EGRC++T H + NVY P A D D+V R+ FKL+F
Sbjct: 106 LYTEDEIRSLDNEGRCIMTQHKMLSDDGEEIRLTVINVYCPMAVLDDPDSVERMAFKLKF 165
Query: 165 FHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML---VE 210
+ +LQ G + ++GD+N + ID CD +F ++ R W ++L
Sbjct: 166 YDLLQKRAEAILQSGSHVIILGDVNASHRPIDHCDPCDEKEFNQHPSRKWLNNLLRTPTN 225
Query: 211 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
S G F D FR HP++REAYTCW + TGA NYGTRID+I + V
Sbjct: 226 SNGLFVDSFRHFHPDQREAYTCWQTLTGARATNYGTRIDYI------------IGDTRLV 273
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
++C IL D + GSDH PV L IP P L S
Sbjct: 274 EDSFSDCVILPD-------------------VRGSDHCPVKAVL-HWECIPAKKYPPLCS 313
Query: 331 RYLPIIRGVQQTLVSVLMKREVAKQG 356
+YLP G QQ L S K K G
Sbjct: 314 KYLPEFVGKQQKLSSYFSKGSGPKSG 339
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 33/54 (61%)
Query: 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 617
+ PLC GHKE C+ R VKK GR F+VC R EG SN EA C +F+W K
Sbjct: 433 TAPLCSGHKEACLLRTVKKDSLNKGRDFWVCNRPEGHKSNKEARCEHFEWVSKK 486
>gi|311276364|ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa]
Length = 515
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 191/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSHLQGAGYEEPSNCTARAVGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATLNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H + NVY P AD R+
Sbjct: 110 VNCYGNMDEFTQEELRALDSEGRALLTQHKIRTQDGDEKSLTVINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+H+LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
++G G F D +R P+++ A+TCW + TGA NYG+RID++L +
Sbjct: 230 SNLRCQAGSHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALV--- 286
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
D +FV V GSDH PV L P +P
Sbjct: 287 MDTFQSSFVLPEV----------------------------MGSDHCPVGAVLNVSP-VP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L++ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVRLE 347
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
K++ V L W+ + + PLC GH+EPCV R VKKPGP GR F++CAR +GP ++
Sbjct: 443 KDKKEVRSLFWKSLLR-GPLPTPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTD 501
Query: 604 PEANCGYFKWA 614
P + C +F W+
Sbjct: 502 PSSRCNFFLWS 512
>gi|386780804|ref|NP_001248294.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|380790123|gb|AFE66937.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|383413815|gb|AFH30121.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
gi|384943488|gb|AFI35349.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/390 (32%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID R + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFR---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|302843683|ref|XP_002953383.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
gi|300261480|gb|EFJ45693.1| hypothetical protein VOLCADRAFT_118317 [Volvox carteri f.
nagariensis]
Length = 705
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 144/224 (64%), Gaps = 27/224 (12%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF-DADIICFQETKLRRQELKSDLVMADGYESFF 59
++++T+N+NGLR+ V+ FG L++LL++ AD++CFQETKL R +L+ +L +ADG+ESFF
Sbjct: 3 LRVLTWNINGLRRVVAVFGGLQRLLEALAPADVVCFQETKLTRVDLQRELALADGWESFF 62
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF- 118
+ TR G+ GYSGVATFCR + ALP+ AEEGFTG+L + + +
Sbjct: 63 AFTR----GKVGYSGVATFCR-------RDRALPLHAEEGFTGVLHLTSEGLHPRWQAAG 111
Query: 119 -SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQ------ 169
S ++L +D EGR VITDHG F+L NVYGP SE+ R+ +KLQF+ LQ
Sbjct: 112 CSPEQLRNLDGEGRVVITDHGGFVLVNVYGPAITSEERAEERMSYKLQFYRALQLRLDGF 171
Query: 170 ---GRRIFVVGDLNIAPAAIDRCDAGP-DF-AKNEFRIWFRSML 208
GRR+ +VGDLNIAP +D C A P DF A R W R +L
Sbjct: 172 LAEGRRVLLVGDLNIAPDYMDVCGATPRDFNACRADRAWLRGLL 215
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 609
A L WR+IQ M+ P C GHKEPC R VKK G GR+F+ CAR +G P C
Sbjct: 616 AALAWRQIQDQMKP--PRCSGHKEPCAVRTVKKRGDNNGRQFWCCARPDG--LPPNGRCD 671
Query: 610 YFKWA 614
+F+WA
Sbjct: 672 FFQWA 676
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
F D FR+ HP+R+ AYTCW +++GA NYG+RIDH+L A
Sbjct: 301 FVDAFRAFHPKRQHAYTCWNTSSGARVNNYGSRIDHVLVA 340
>gi|410211214|gb|JAA02826.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410247596|gb|JAA11765.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410289688|gb|JAA23444.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
gi|410336533|gb|JAA37213.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Pan
troglodytes]
Length = 518
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|355757398|gb|EHH60923.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca fascicularis]
Length = 518
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|397471227|ref|XP_003807199.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
paniscus]
Length = 518
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 187/390 (47%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK+ F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMHFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|121704746|ref|XP_001270636.1| ap endonuclease [Aspergillus clavatus NRRL 1]
gi|119398782|gb|EAW09210.1| ap endonuclease [Aspergillus clavatus NRRL 1]
Length = 620
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 175/669 (26%), Positives = 276/669 (41%), Gaps = 154/669 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 20 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLP----KAKKGYSGVAIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
P+ AEEG TGLL + G +E L + D ++ +D
Sbjct: 73 ----NATCCPIRAEEGLTGLLCPPNSSVSFRELPEDQQIGGYPTLEQLSELETDPVI-LD 127
Query: 128 SEGRCVITDHGHFILFNVYGP--RADSEDTVRIQF------KLQFFHVLQGRRIFVVGDL 179
SEGRCVI + F+L +Y P R +S D+ R F +++ V G+R+FV GD+
Sbjct: 128 SEGRCVILEFPAFVLLGIYSPANRDESRDSFRHNFIDLMDTRIRNL-VAMGKRVFVTGDI 186
Query: 180 NIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSFFDV 218
NIA ID A +F R F +L + + FD+
Sbjct: 187 NIARGEIDAAHATEAIRKGTATEDEFVSTPARRVFNQLLSDGKVLGARDEGREEPALFDI 246
Query: 219 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
RS HPERR YTCW A NYG+RID++LC+ L + ++ CD
Sbjct: 247 CRSFHPERRGMYTCWEQRINARPGNYGSRIDYVLCS---------LNTQDWF------CD 291
Query: 279 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSL---------- 328
+ L GSDH PVY + + + L
Sbjct: 292 -----------------SNIQEGLMGSDHCPVYAVFKDTVRLEEREVNMLDIVNPPGMFK 334
Query: 329 --------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSE 380
++YL G L+ KR K S K S ++P ST
Sbjct: 335 NGERQQEYTTKYLLPTSG---RLIPEFDKRRSIKDMFSRKPSTTMP---TSTPRVPTLEH 388
Query: 381 NVDRSLNNYCDSGILQGVYCSS-SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 439
++ +G+ + ++ S+Q+ +G K + S I+
Sbjct: 389 SMSTQETQVSTAGLGSPIKTAAGSSQQIKGVVRKRSQK-----------------SEVIA 431
Query: 440 PFHVDRAR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS-VTDTSL 494
P V R++ +++ GQ SL+ FF +++ SI+ +V+N +T+ S+
Sbjct: 432 PVSVKRSKSGTAQQSTPPTAGQTSLRGFFKPKNDAVGRTGRSISGNPESVSNGIITEQSV 491
Query: 495 -----SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 549
S E + + + TD + + N + QD G +D V
Sbjct: 492 AFPIKSTEVATSTSSEAMQAVPTDTATQGDQPDLSNPIAPASSQD---GGFVIDP---IV 545
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 607
+ +W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E
Sbjct: 546 SKEDWSKL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRAFWICPRPLGPSGNKEKGTQ 603
Query: 608 --CGYFKWA 614
C F WA
Sbjct: 604 WRCPTFIWA 612
>gi|355704840|gb|EHH30765.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca mulatta]
Length = 518
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ V ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPVQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERILTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|301114885|ref|XP_002999212.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
gi|262111306|gb|EEY69358.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
Length = 482
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 191/385 (49%), Gaps = 90/385 (23%)
Query: 1 MKIVTYNVNGLR---QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYES 57
+++VT+NVNGLR QR+ Q +L + L+S +ADIIC QETKL R EL +LV G+++
Sbjct: 5 LRLVTWNVNGLRAVLQRLEQ--NLLQFLESLEADIICLQETKLTRSELDEELVRPPGFDA 62
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG-LE 116
F+S R R GYSGV TF + P VAAEEG TG +T + G L
Sbjct: 63 FYSFCR----HRGGYSGVVTFVKGDLP--------TVAAEEGLTGHWQTKDNVGHVGSLH 110
Query: 117 DFSKDELLK-IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR---- 171
D ++L +++EGRC+ITDH F+L N Y P S D R+++KLQF +L+ R
Sbjct: 111 DELPSKILNDLEAEGRCIITDHQTFVLLNTYCPALASAD--RLEYKLQFHGLLEDRVNAL 168
Query: 172 -----RIFVVGDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSMLVESGGSFF---- 216
R+ VVGD+NIA ID CD G F + R W S + SG +
Sbjct: 169 RAANKRVIVVGDINIAHREIDHCDPHAHRDDGSSFGDHPCRKWMDSFVGVSGEKYLPNPH 228
Query: 217 --------------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
D +R HP++ +AYTCW + TGA Q NYGTRID+IL A P
Sbjct: 229 SDDIVDGEPAVKMIDTYRHFHPDQTKAYTCWNTQTGARQTNYGTRIDYIL-ADP------ 281
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEVPEIP 321
F+ C V+ C ID +R GSDH PV M C E+
Sbjct: 282 -----TFIEC-VSSCS--IDAERL-----------------GSDHCPVLMSCTVELETSS 316
Query: 322 QHS---TPSLASRYLPIIRGVQQTL 343
+ T +L +R G QQ++
Sbjct: 317 STNTGITAALCARNFAEFSGTQQSI 341
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 552 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 611
LEW ++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 410 LEWAQVLNGRPPPTPLCHC-GQPTVLRSVIKTNENWGRKFYVCTKPAGEKGNPDARCDFF 468
Query: 612 KWAFSKSKQK 621
KW K +K
Sbjct: 469 KWVDKKGTKK 478
>gi|426256950|ref|XP_004022099.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Ovis aries]
Length = 514
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 125/387 (32%), Positives = 189/387 (48%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVKYEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ L+DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNLDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIIMGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
ESG G F D +R HP+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFHPKQKRAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|432099379|gb|ELK28619.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 512
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 127/394 (32%), Positives = 193/394 (48%), Gaps = 83/394 (21%)
Query: 1 MKIVTYNVNGLRQRVSQ-------FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L + +
Sbjct: 2 LRVVSWNINGIRSPLQAEEPNSCTTTAMARVLDKLDADILCLQETKVTRDALTEPLAIIE 61
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-- 111
GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 GYNSYFSFSRN----RSGYSGVATFCK--------DGATPVAAEEGLSGLLALQNGDVGC 109
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQFKL 162
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK+
Sbjct: 110 YGNMDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKM 169
Query: 163 QFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE- 210
+F+ +LQ G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 170 RFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSKL 229
Query: 211 --SGGS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 264
GGS F D +R HP++ A+TCW + TGA + NYG+RID++ L
Sbjct: 230 DCQGGSHVGAFIDTYRCFHPKQERAFTCWSTITGARRLNYGSRIDYV------------L 277
Query: 265 QSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHS 324
VT + +L + + GSDH PV L V +P
Sbjct: 278 GDRTLVTDTFQDSFLLPE-------------------VMGSDHCPVGAVL-NVSSVPAKQ 317
Query: 325 TPSLASRYLPIIRGVQQTLVSVLM---KREVAKQ 355
P L +R+LP G Q ++ L+ + V+KQ
Sbjct: 318 CPPLCTRFLPEFSGTQLKILHFLVHPKQEPVSKQ 351
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+P+C GH EPCV R VKK GP GR F++C+R GP+++P + C +F W+
Sbjct: 460 MPVCGGHGEPCVMRTVKKAGPNQGRHFYMCSRPRGPSTDPSSRCNFFLWS 509
>gi|5410346|gb|AAD43041.1|AF119046_1 APE2 protein [Homo sapiens]
Length = 518
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|18375507|ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1 [Homo
sapiens]
gi|73921676|sp|Q9UBZ4.1|APEX2_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease XTH2; AltName: Full=APEX nuclease
2; AltName: Full=APEX nuclease-like 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|4996359|dbj|BAA78422.1| APEX nuclease-like 2 protein [Homo sapiens]
gi|5102658|emb|CAB45242.1| AP endonuclease XTH2, putative [Homo sapiens]
gi|10336529|dbj|BAB13764.1| apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gi|12804203|gb|AAH02959.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57864642|gb|AAW56941.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|119613615|gb|EAW93209.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_b
[Homo sapiens]
gi|123993987|gb|ABM84595.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|123997761|gb|ABM86482.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|208965822|dbj|BAG72925.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|311347418|gb|ADP90654.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347420|gb|ADP90655.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347422|gb|ADP90656.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347424|gb|ADP90657.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347426|gb|ADP90658.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347428|gb|ADP90659.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347430|gb|ADP90660.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347432|gb|ADP90661.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347434|gb|ADP90662.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347436|gb|ADP90663.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347438|gb|ADP90664.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347440|gb|ADP90665.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347442|gb|ADP90666.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347444|gb|ADP90667.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347446|gb|ADP90668.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347448|gb|ADP90669.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347450|gb|ADP90670.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347454|gb|ADP90672.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347456|gb|ADP90673.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347458|gb|ADP90674.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347460|gb|ADP90675.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347462|gb|ADP90676.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347464|gb|ADP90677.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347466|gb|ADP90678.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347468|gb|ADP90679.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347470|gb|ADP90680.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347472|gb|ADP90681.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347474|gb|ADP90682.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347476|gb|ADP90683.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347478|gb|ADP90684.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347480|gb|ADP90685.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347482|gb|ADP90686.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347484|gb|ADP90687.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347488|gb|ADP90689.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347490|gb|ADP90690.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347492|gb|ADP90691.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347494|gb|ADP90692.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347496|gb|ADP90693.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|426396092|ref|XP_004064289.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 1
[Gorilla gorilla gorilla]
Length = 518
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|311347452|gb|ADP90671.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|296235588|ref|XP_002762961.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Callithrix
jacchus]
Length = 518
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 125/395 (31%), Positives = 190/395 (48%), Gaps = 86/395 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGMANQEPNNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID D+ F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQG 356
PSL +R+LP G Q ++ L+ KQG
Sbjct: 318 AKQCPSLCTRFLPEFAGTQLKILRFLVP---LKQG 349
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 37/50 (74%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
IPLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 466 IPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|403306456|ref|XP_003943750.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Saimiri
boliviensis boliviensis]
Length = 518
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPNNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKERTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID D+ F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+RID++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 466 VPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPNDPSSRCNFFLWS 515
>gi|311347486|gb|ADP90688.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 188/390 (48%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARYLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|379047284|gb|AEI30104.2| apurinic/apyrimidinic endonuclease, partial [Camelus dromedarius]
Length = 488
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 185/387 (47%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + G ++ +LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGVGYEEPSNCTATAVGHILDKLDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAANLECFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G GSF D +R P+++ A+TC + +GA NYG+R+D++L
Sbjct: 230 SNLGCQAGSYTGSFIDSYRCFQPKQKGAFTCRSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ + L+ + GSDH PV L V +P
Sbjct: 281 ----GDRTLVIXTFQASFLLP------------------EVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L +R+LP G Q T++ L+
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLTILRFLV 344
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRF 591
+ +PLC+GH+EPCV R VKKPGP GR F
Sbjct: 460 SPMPLCEGHREPCVMRTVKKPGPNLGRHF 488
>gi|297710110|ref|XP_002831748.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pongo
abelii]
Length = 518
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 187/390 (47%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F + R W S+L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 SNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAITGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 515
>gi|321477228|gb|EFX88187.1| hypothetical protein DAPPUDRAFT_305561 [Daphnia pulex]
Length = 476
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 181/373 (48%), Gaps = 71/373 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
IVT+N+NG+R S +L+ L DS ADIIC QETK+ R L + DGY SF+S +
Sbjct: 4 IVTWNINGIR---SSQQNLKDLFDSLGADIICLQETKITRDMLDESTALVDGYSSFYSFS 60
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI--MEGLEDFSK 120
R R+GYSGVAT+C K+ +S P AEEG G KI + +
Sbjct: 61 RK----RSGYSGVATYC--KNSYS------PFQAEEGLAGTFNVHDDKIDFYDNVHSSFT 108
Query: 121 DELLK-IDSEGRCVITDHGH--------FILFNVYGPRADSEDTVRIQFKLQFFHVL--- 168
DE L+ +D+EGRCV+T H ++ NVY P A D R+ +KL+F+ L
Sbjct: 109 DEGLRALDAEGRCVMTLHKFKKEETSISLVVINVYCPNAGENDE-RLPYKLEFYRALNLR 167
Query: 169 ------QGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESGGSFFDVFR 220
QG + V+GD+N++ ID C+ F K+ R+W L E GG F D FR
Sbjct: 168 CHDFLSQGYYVIVLGDMNVSHRLIDHCEPEDVSSFPKSPSRLWLDGFLHEGGGKFVDSFR 227
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 280
+P + +A+TCW + A NYGTRID+IL + N +T + +C I+
Sbjct: 228 HLYPTKEKAFTCWNTKLSARVNNYGTRIDYILLS-------------NQLTDALQDCIIM 274
Query: 281 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQ 340
D + GSDH PV L + IP P+L +++ G Q
Sbjct: 275 SD-------------------VYGSDHCPVKSSLA-LDIIPSTKLPALCTKFFKEFSGKQ 314
Query: 341 QTLVSVLMKREVA 353
+ + KR +A
Sbjct: 315 LKMSTFFCKRTLA 327
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+E C R VKK GP R+F+ C+RA G +S+ A C +F WA
Sbjct: 426 PLCSGHQEACTLRTVKKKGPNMNRQFWTCSRATGHSSDLNAQCNFFVWA 474
>gi|194228591|ref|XP_001494126.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Equus
caballus]
Length = 512
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 187/389 (48%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF---------GSLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGVCEEPSNCTAMAMGRVLDKLDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T +
Sbjct: 62 IEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATHNGDV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRALDSEGRALLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLAF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID DA F + R W S+L
Sbjct: 170 KMRFYRLLQTRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D +R P++ A+TCW +GA NYG R+D++L
Sbjct: 230 NPGCQAESHVGPFIDSYRCFQPKQEGAFTCWSVVSGARPLNYGCRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L++ E
Sbjct: 318 KQCPPLCTRFLPEFAGTQLKILRFLVRLE 346
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 458 SPMPLCGGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPASRCNFFLWS 509
>gi|431914762|gb|ELK15800.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Pteropus alecto]
Length = 515
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 185/387 (47%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGVVYEEPNNCTAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLATQHGN 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ ++ F+++EL +DSEGR ++T H L NVY P D R+
Sbjct: 110 VGCYGNMDAFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHVDPGKPERLA 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+H+LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P+++ A+TCW TGA NYG+R+D++L
Sbjct: 230 SNLGCQAGSHVGPFIDSYRCFQPKQKGAFTCWSVVTGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L +R+LP G Q ++ L+
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILHFLV 344
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC+GH EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 463 MPLCRGHGEPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 512
>gi|344297470|ref|XP_003420421.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Loxodonta
africana]
Length = 516
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 186/390 (47%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
++++++N+NG+R + +L +LLD DADI+CFQETK+ R L L
Sbjct: 2 LRVLSWNINGIRSPLQGAVCQEPNNCTAMALGRLLDELDADIVCFQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLASQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGQEKTLTLINVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK+ F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMHFYRLLQIRAEALLEAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW +GA NYG+R+D++L
Sbjct: 230 SVLGCQAGAHIGPFIDSYRCFQPKKEGAFTCWSVVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRALVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q + L++ E
Sbjct: 318 TKQCPPLCTRFLPEFAGTQLKIRHFLIRLE 347
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 7/132 (5%)
Query: 488 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQD------EKKGKRF 541
S +S Q+ + S+ P + L GV + + +Q+ E + K
Sbjct: 382 SQAGSSRGQKNLMSYFQPSSSHPQASPDLELPSLMGVPVTPVTPEQEAAAKMVEVQAKAS 441
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA 601
K V L W+ + + +PLC GH EPCV R VKKPGP GR F++CAR GP
Sbjct: 442 ETKYEKEVRTLCWKSVLA-GPSPMPLCWGHGEPCVIRTVKKPGPNLGRCFYICARPRGPP 500
Query: 602 SNPEANCGYFKW 613
++P A C +F W
Sbjct: 501 TDPSARCNFFLW 512
>gi|395819091|ref|XP_003782935.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Otolemur
garnettii]
Length = 518
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 183/390 (46%), Gaps = 83/390 (21%)
Query: 1 MKIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++L +ADIIC QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGEVHREPSKCAPVAIGRILSELNADIICLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ A PVAAEEG +GLL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------NCATPVAAEEGLSGLLATQKGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY PR D R+
Sbjct: 110 VGCYGNMDEFTQEELRGLDSEGRALLTQHKIHTEEGKERTLTLINVYCPRVDPGKPERLA 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLESFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P+++ A+TCW TGA NYG+RID++
Sbjct: 230 SNLGCQSGSHVGPFIDSYRYFQPKQKGAFTCWSVVTGARHLNYGSRIDYV---------- 279
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
L V +L D + GSDH PV L P +P
Sbjct: 280 --LGDRTLVIDTFQASFLLPD-------------------VMGSDHCPVGAVLNVSP-VP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+LP G Q ++ L+ E
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVPLE 347
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLC GH+EPCV R VKKPGP GR F++CAR +GP ++ + C +F W
Sbjct: 467 PLCGGHREPCVMRTVKKPGPNLGRCFYICARPQGPPTDLSSRCNFFLW 514
>gi|440907085|gb|ELR57275.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos grunniens mutus]
Length = 514
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 188/387 (48%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|62751813|ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
gi|73921675|sp|Q5E9N9.1|APEX2_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|59858127|gb|AAX08898.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 514
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 188/387 (48%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|296470685|tpg|DAA12800.1| TPA: DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
Length = 514
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 188/387 (48%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 460 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 511
>gi|402223533|gb|EJU03597.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 616
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 179/678 (26%), Positives = 272/678 (40%), Gaps = 147/678 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDS--FDADIICFQETKLRRQELKSDLVMA 52
M+I+T+N+NG+R ++Q+ +L +L+S +DI CFQE K+ R + + +
Sbjct: 1 MRILTWNINGVRT-LNQYHPWYTLKTLEAMLESEEIKSDIFCFQEMKIARTAIDRSIALP 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM 112
Y++FFS KG GYSGVA + + + P+ AEEG +GLL+ S +
Sbjct: 60 GPYDAFFSLPLGKSKG--GYSGVAVY-------ADSRTVRPMKAEEGLSGLLQPKPSLSL 110
Query: 113 EG----------LEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E L DF DE ++++D+EGR ++ D G F+L N Y P SE+
Sbjct: 111 EERVSRHYRQAHLLDFIPDEKGAIPSDVIELDNEGRALVLDFGLFVLINTYCPAEASEN- 169
Query: 156 VRIQFKLQFFHVL----------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----- 200
R+ FK+ F ++L + R + VVGD+NI ID CD ++ +
Sbjct: 170 -RLSFKINFHNMLRERVRILIEEEHREVIVVGDINICSQPIDHCDGRLQSKRSVWWDHPP 228
Query: 201 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 260
R+W R L + G D+ R P+R YTCW + A NYGTRID++LC
Sbjct: 229 RVWLRDWL-QPTGKLVDLTRKFWPDRTGMYTCWNTLIDARTANYGTRIDYVLCT------ 281
Query: 261 KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 320
+ + DIL + + GSDH PV++ + +
Sbjct: 282 -------EGLIPWIMHSDILPN-------------------VHGSDHCPVFVDFFDEITL 315
Query: 321 PQHSTPSLAS--RYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 378
P L +Y P + + R + +FS P S+ G T
Sbjct: 316 PDGKVRRLREEMKYDP----------TRALPRIATRNWD--EFSNKQPLLSSFFGKTA-I 362
Query: 379 SENVDRSLNNYCD---SGILQGVYCSSSNQESEGEFTKTIENC--RDSANVASHSTITQG 433
+ +DR ++ CD + Q + S + N RD+A + + +
Sbjct: 363 TPPIDRPPSSSCDPKEQPMSQAPETTFETSHSPDSLSDAASNAVSRDTAPLPAQVVVGAP 422
Query: 434 SSNHISPFHV-----DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 488
SS S ++ + K+ + QL L SFF + S
Sbjct: 423 SSAPKSQRQATSQDRNKGKDAKKRPKNRQLKLSSFFGAK----------------GAAES 466
Query: 489 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 548
T S+ + +S S + P S E+ VC + G E +
Sbjct: 467 STQAVPSKVKSSKSRTPSQRTPSQSTQNSTSEIEDSEDDVCWEKIIGQSGA----SESSK 522
Query: 549 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------- 601
A W I L S P C GH P VV KPGPT GR F++C+ G
Sbjct: 523 AA---WSNI--LTRPSAPKCSGHGLPAKEFVVNKPGPTKGRHFYLCSLPVGTGYDAGHSK 577
Query: 602 -----SNPEANCGYFKWA 614
NPE C +F WA
Sbjct: 578 RLREEVNPEFRCNFFMWA 595
>gi|61554419|gb|AAX46554.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 407
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 188/387 (48%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRLVSWNINGIRSPLQGVRCEEPSSCSAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPVAAEEGLSGLLSTQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ ++DF+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDDFTQEELRALDSEGRALLTQHKICTWEGKEKTLTLINVYCPHADPGKPERLT 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--GPDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLL 229
Query: 209 ----VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
ESG G F D +R P+++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SNLGCESGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------SSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
P L + +LP G Q ++ L+
Sbjct: 318 AKQCPPLCTCFLPEFAGTQLKILRFLV 344
>gi|354476041|ref|XP_003500233.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus
griseus]
gi|344246210|gb|EGW02314.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Cricetulus griseus]
Length = 517
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 187/389 (48%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLSCQESSNCPTALRRILDKLDADIVCLQETKVTRDVLTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G+ T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSTTPVAAEEGLSGVFATLNGDV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR V+T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRAVLTQHKIRTSEGKEKTLTLINVYCPHADPGKPERLSF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDAG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDAGSMECFEEDPGRKWMDGLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D +R HP++ +A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGMEAGSQTGLFMDSYRCFHPKQEKAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRTLVIDTFQ---------TSFLLPEVMGSDHCPVGAVL-NVSCMPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 535 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 594
E+K K K+ V W+ + + +PLC GH+EPCV R VKK GP GR F++C
Sbjct: 436 EEKAKVSEAKDEKEVRTSFWKSMLS-GPSPMPLCGGHREPCVMRTVKKAGPNLGRHFYMC 494
Query: 595 ARAEGPASNPEANCGYFKWA 614
AR GP S+P + C +F W+
Sbjct: 495 ARPRGPPSDPSSRCNFFLWS 514
>gi|348683853|gb|EGZ23668.1| hypothetical protein PHYSODRAFT_481346 [Phytophthora sojae]
Length = 476
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 189/382 (49%), Gaps = 83/382 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+++VT+NVNGLR + + G +L++ L+ +ADIIC QETK+ R EL +LV G+++F+
Sbjct: 5 LRLVTWNVNGLRAVLQRLGQNLQQFLEGLEADIICLQETKMTRSELDQELVRPPGFDAFY 64
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG--LED 117
S R R GYSGV TF + P VAAEEG TGL + S G +
Sbjct: 65 SFCRH----RGGYSGVVTFVKSDLP--------TVAAEEGLTGLWQAKDSVGHLGSLQNE 112
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR------ 171
S + +++EGRCVITDH F+L N Y P S D R+++KLQF +L+ R
Sbjct: 113 LSSKLVSDLEAEGRCVITDHQAFVLLNTYCPALASAD--RLEYKLQFHALLEDRVRALRR 170
Query: 172 ---RIFVVGDLNIAPAAIDRCDA------GPDFAKNEFRIWFRSML-------------V 209
R+ VVGD+NIA ID CD G FA + R W +
Sbjct: 171 ANKRVVVVGDINIAHREIDHCDPDTHRADGSSFADHPCRRWMDGFVGKPEEQDCNFYSEP 230
Query: 210 ESGGSF--FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+SG F D FR +P + +A+TCW + TGA Q NYGTRID+IL P LQS
Sbjct: 231 KSGYEFKMVDAFRHFYPTQTKAFTCWNTQTGARQTNYGTRIDYIL-VDPAF-----LQS- 283
Query: 268 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM-CLGEV---PEIPQH 323
V C I D RL GSDH PV + C E+ I +
Sbjct: 284 ------VTACSIEAD------------------RL-GSDHCPVVISCTVELETDSSINRG 318
Query: 324 STPSLASRYLPIIRGVQQTLVS 345
T +L+++ G QQ++ S
Sbjct: 319 ITAALSAKNFVEFSGTQQSIKS 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 552 LEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYF 611
LEW+++ PLC +P V R V K +GR+F+VC + G NP+A C +F
Sbjct: 404 LEWQQVLSGRPPPTPLCYC-GQPTVLRSVVKANENWGRKFYVCTKPAGERGNPDARCEFF 462
Query: 612 KWAFSKSKQK 621
KWA +K +K
Sbjct: 463 KWADNKGPKK 472
>gi|444520956|gb|ELV13065.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Tupaia chinensis]
Length = 517
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 123/387 (31%), Positives = 183/387 (47%), Gaps = 83/387 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++L+ DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYQEPSNCAPMAMGRILNELDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DSATPMAAEEGLSGLLATQNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDHGH---------FILFNVYGPRADSEDTVRIQ 159
+ ++ F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDAFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLVNVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML 208
FK++F+H+LQ G + ++GDLN A ID +A F ++ R W +L
Sbjct: 170 FKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWNAATLECFEEDPGRKWMDRLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
GSF D +R PE+ A+TCW +GA NYG+RID++L
Sbjct: 230 SNLSCQADSHIGSFVDTYRCFQPEQEGAFTCWSVVSGARHLNYGSRIDYVL-------GD 282
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
L F + L+ + GSDH PV L V +P
Sbjct: 283 RTLVRDTF------QASFLLP------------------EVMGSDHCPVGAVL-NVSCVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLM 348
PSL +R+LP G Q + L+
Sbjct: 318 AKQCPSLCTRFLPEFAGTQLKIFPFLV 344
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 488 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 547
S +S Q+ + HS+ P + L + + + +E K ++ R
Sbjct: 382 SQVGSSRGQKNLTSYFRHSSSCPQVSPDLELPSLPLMGALITPKTSEETVAKVVEEQARV 441
Query: 548 NVALLEWRRIQQLMETSI-------PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
+ A E + I+ L S+ PLC GH+EPCV R VKKPGP GRRF+VCAR +GP
Sbjct: 442 SGAKDE-KEIRTLFWKSVLSGPLPTPLCGGHREPCVMRTVKKPGPNLGRRFYVCARPQGP 500
Query: 601 ASNPEANCGYFKW 613
S+P + C +F W
Sbjct: 501 PSDPLSRCNFFLW 513
>gi|73921677|sp|Q68G58.1|APEX2_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|51259055|gb|AAH78633.1| Apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 516
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 187/389 (48%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 560
NK+P +DEK ER W+ +
Sbjct: 432 TVLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|141447778|gb|ABO87600.1| DNA lyase [Coccidioides immitis]
Length = 606
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 173/672 (25%), Positives = 273/672 (40%), Gaps = 134/672 (19%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S ++ D + DII FQETK+++++L+ D+V+ G+
Sbjct: 3 LRLTTWNVNGIRNPFSYPPRAENKSFERMFDILEGDIIVFQETKIQKRDLRDDMVLIPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ FFS R + GYSGV + R + P+ AEEG TG L + GS +
Sbjct: 63 DCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRAEEGLTGTLSSPGSPLPYRE 111
Query: 112 ------MEGLEDFSKDELLKID-----SEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G + ELL ID SEGRCVI + F+L VY P + D R F
Sbjct: 112 LPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVF 169
Query: 161 KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFR 201
+ F +VL G+R+ ++GD+NI+ ID +F + R
Sbjct: 170 RAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHIIEAIRKGKTTETEFLSSPSR 229
Query: 202 IWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F + LV GG+ DV R HP+R YTCW A NYG RID++
Sbjct: 230 RLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYV 288
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
LC+ +D + W + + L GSDH PVY
Sbjct: 289 LCS--------------------------VDMEDWFT------ESNIQEGLMGSDHCPVY 316
Query: 312 MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 371
+ + T L P G+ + + R+ S SG L E +
Sbjct: 317 GIINDTVSCRNMDTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHR 368
Query: 372 TGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 431
+D + + + + L S + ++ ++++
Sbjct: 369 RRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPK 428
Query: 432 QGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNV 485
+ N S RA+K + GQ +L SF + R + ++ S LNV
Sbjct: 429 RALENWTSLSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNV 485
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 545
+ + + + + PES + N S S++ + ++ + G+R +
Sbjct: 486 PDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSA 534
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 605
+ + A L +R + P C+GH EPC+ V KKPGP GR F++C R GP+ N E
Sbjct: 535 KESWAKLFTKR-------APPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKE 587
Query: 606 AN----CGYFKW 613
C F W
Sbjct: 588 IGTPWRCSTFIW 599
>gi|152002965|gb|ABS19620.1| DNA lyase [Coccidioides posadasii]
Length = 606
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 171/672 (25%), Positives = 273/672 (40%), Gaps = 134/672 (19%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S ++ D + DII FQETK+++++L+ D+V+ G+
Sbjct: 3 LRLTTWNVNGIRNPFSYQPWRENKSFERMFDILEGDIIVFQETKIQKRDLRDDMVLIPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ FFS R + GYSGV + R + P+ AEEG TG L + GS +
Sbjct: 63 DCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRAEEGLTGTLSSPGSPLPYRE 111
Query: 112 ------MEGLEDFSKDELLKID-----SEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G + ELL ID SEGRCVI + F+L VY P + D R F
Sbjct: 112 LPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFVLLGVYCPA--NRDETRDVF 169
Query: 161 KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC----------DAGPDFAKNEFR 201
+ F +VL G+R+ ++GD+NI+ ID +F + R
Sbjct: 170 RAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVIEAIRKGKTTETEFLSSPSR 229
Query: 202 IWFRSMLVESGGS----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F + LV GG+ DV R HP+R YTCW A NYG RID++
Sbjct: 230 RLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTCWEQRVNARPGNYGARIDYV 288
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
LC+ +D + W + + L GSDH PVY
Sbjct: 289 LCS--------------------------VDMEDWFT------ESNIQEGLMGSDHCPVY 316
Query: 312 MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNS 371
+ + +T L P G+ + + R+ S SG L E +
Sbjct: 317 GIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQPLTSSSLPLSGRLIPEFHR 368
Query: 372 TGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 431
+D + + + + L S + ++ ++++
Sbjct: 369 RRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSVSNLKKEEKDTSISNKGQPK 428
Query: 432 QGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK---RSNVSHDDNNSITDTSLNV 485
+ N + RA+K + GQ +L SF + R + ++ S LNV
Sbjct: 429 RALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRPRQTFTLEEPRS---EILNV 485
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 545
+ + + + + PES + N S S++ + ++ + G+R +
Sbjct: 486 PDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHTPT----DPTEVGERAISSA 534
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 605
+ + A L + + P C+GH EPC+ V KKPGP GR F++C R GP+ N E
Sbjct: 535 KESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPNCGRSFWICPRPLGPSGNKE 587
Query: 606 AN----CGYFKW 613
C F W
Sbjct: 588 IGTPWRCSTFIW 599
>gi|21541818|ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus]
gi|19912820|dbj|BAB88654.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|22830557|dbj|BAC11807.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|26341548|dbj|BAC34436.1| unnamed protein product [Mus musculus]
gi|148675566|gb|EDL07513.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_a [Mus musculus]
Length = 516
Score = 182 bits (461), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 187/389 (48%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 73/174 (41%), Gaps = 33/174 (18%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 373 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 431
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 560
NK+P +DEK ER W+ +
Sbjct: 432 TMLEEKNKVP--------------------ESKDEKG-------ERTAF----WKSMLS- 459
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 460 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|120586985|ref|NP_001073361.1| uncharacterized protein LOC317628 [Rattus norvegicus]
gi|119850781|gb|AAI27531.1| Similar to apurinic/apyrimidinic endonuclease 2 [Rattus norvegicus]
gi|149031345|gb|EDL86343.1| rCG38932, isoform CRA_a [Rattus norvegicus]
Length = 516
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/389 (31%), Positives = 185/389 (47%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLAGQEPSNSPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
++F+++EL +DSEGR +T H L NVY P AD R+ F
Sbjct: 110 GCYGNTDEFTQEELRVLDSEGRAFLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D FR HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGNEAGPHIGHFMDSFRYFHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRSLVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 35/175 (20%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQE-EV 499
H R RK + Q SL S+F SN+S + + +L + + +T T ++E +
Sbjct: 373 IHSTRLRKTQGVPKRNQKSLMSYFQPSSNLSQTSDVELP--TLPLVSPLTSTKTAEEVAM 430
Query: 500 PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQ 559
NK+P +DEK+ V W+ +
Sbjct: 431 ATVVKEKNKVP--------------------EAKDEKE-----------VRTAFWKSMLS 459
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR F++CAR GP S+P + C +F W+
Sbjct: 460 -GPSPMPLCGGHREPCVMRTVKKAGPNFGRHFYMCARPRGPPSDPSSRCNFFLWS 513
>gi|392565223|gb|EIW58400.1| DNase I-like protein [Trametes versicolor FP-101664 SS1]
Length = 632
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 180/686 (26%), Positives = 269/686 (39%), Gaps = 149/686 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F S +LD ADIICFQE K R+ L D+ + Y
Sbjct: 1 MRILSWNINGIRTLPKYHPWNTFESCEGILDELKADIICFQEMKSSRESLPRDVALPGHY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
SFFS + + GYSGVA ++++ A P+ AEEG +G L+ E
Sbjct: 61 HSFFSFPVS----KGGYSGVAV-------YANSRTAAPLKAEEGLSGRLQLQPPLSPEER 109
Query: 116 EDFS----------KDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
S DE +D+EGR ++ D G F+L NVY P S+ R+
Sbjct: 110 VSPSYPYPHDITAYPDEQGEVPATFEGLDAEGRGLVVDFGLFVLINVYCPNETSD--ARL 167
Query: 159 QFKLQFFHVLQG----------RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIW 203
FK+ + +LQ R + V+GD+N+ +D + +++ F R W
Sbjct: 168 SFKMNYHLMLQERVRKLIEEEHREVIVLGDINVCATPLDHAEGHFASSQDTFYDHPARAW 227
Query: 204 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
F G DV R+ PER+ YTCW + A + NYG RID+IL L
Sbjct: 228 FHKWR-SPNGPMIDVIRTFWPERKGLYTCWNTKLQARETNYGGRIDYILVTKGLL----P 282
Query: 264 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--------G 315
SH G + L+GSDH P+Y+ L G
Sbjct: 283 WISH----------------------------GDIQPSLKGSDHCPIYIDLRDEIVLESG 314
Query: 316 EVPEIPQ--------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK------QGKSCKF 361
E + P LA+++ G Q L + KR V+K Q
Sbjct: 315 ETVTLRDAMQQTDVARDPPRLAAKFWDEFSGKQTVLSAFFGKRAVSKDASNNEQQTPPIL 374
Query: 362 SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 421
SGS ++ G++ +VD L S +S E +K I+ + S
Sbjct: 375 SGS--QRADPPGNSSAVM-DVDVQL-----SATQSASQPIASTPAPSPEVSKKIKPPQPS 426
Query: 422 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 481
+ +T N P + K +K GQ SL SFF K + S + + +
Sbjct: 427 KLAPTSAT------NKRKPLEPTASSSKKRKQVKGQASLASFFSKPAAASPSKSREVIEI 480
Query: 482 SLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY--SCSVHELHGVNSSVCSHDQDEKKGK 539
+ + T ++L+ + P S +++ DY +C + + S S QD + K
Sbjct: 481 EDDAPTAST-SALAPDTPPLSQAEQDQL-DADYRLACELAQEDAEPSPTPSSSQDPTQKK 538
Query: 540 RFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 599
W + P C H EP V KPGP G+ FF+C+R G
Sbjct: 539 ------------AAWSEL--FAPIQPPHCTVHGEPTKMYTVNKPGPNKGKTFFICSRPVG 584
Query: 600 PASNP------------EANCGYFKW 613
P + C YFKW
Sbjct: 585 PGYDKGKSERLREEVDHRYRCNYFKW 610
>gi|426396094|ref|XP_004064290.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform 2
[Gorilla gorilla gorilla]
Length = 525
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/397 (30%), Positives = 188/397 (47%), Gaps = 90/397 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGL 103
+ +GY S+FS +R R+GYS GVATFC+ + A PVAAEEG +GL
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSEVPCLFPGVATFCK--------DNATPVAAEEGLSGL 109
Query: 104 LETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADS 152
T + +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 110 FATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADP 169
Query: 153 EDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFR 201
R+ FK++F+ +LQ G + ++GDLN A ID DA F ++ R
Sbjct: 170 GRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGR 229
Query: 202 IWFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
W S+L G G F D +R P++ A+TCW + TGA NYG+R+D++L
Sbjct: 230 KWMDSLLSSLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL-- 287
Query: 255 GPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ ++ID + + + GSDH PV L
Sbjct: 288 --------------------GDRTLVIDTFQ---------ASFLLPEVMGSDHCPVGAVL 318
Query: 315 GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
V +P P L +R+LP G Q ++ L+ E
Sbjct: 319 -SVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLE 354
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 474 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 522
>gi|12862077|dbj|BAB32346.1| unnamed protein product [Mus musculus]
Length = 385
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 122/389 (31%), Positives = 186/389 (47%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPXKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLV 209
K++F+ +LQ G + ++GDLN A ID CDA F + R W +L
Sbjct: 170 KMRFYRLLQMRAEPLLAAGSHVIILGDLNTAHRPIDHCDASSLECFEXDPGRKWMDGLLS 229
Query: 210 ESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 NPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ ++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILRFLVPLE 346
>gi|393240732|gb|EJD48257.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 613
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 129/403 (32%), Positives = 179/403 (44%), Gaps = 106/403 (26%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+IVT+N+NG+R + GS R +LD A I+CFQE K RQ+L + DGY
Sbjct: 1 MRIVTWNINGVRTLPKYHPWNGLGSWRAILDGIGASIVCFQEMKTTRQQLDRATALPDGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
+SFFS + GYSGVA + + A+P AEEG + L+ +
Sbjct: 61 DSFFSFPMQ----KGGYSGVAVYTKRTD-------AVPFKAEEGLSARLQPTKPPLSAEE 109
Query: 109 --SKIMEGLEDFSKD-----------ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S+ ++D + + ++L++D EGR ++ D G F+L N+Y P SE
Sbjct: 110 RVSRAYPDIDDLAAEFIPNDDGSVPQDVLELDGEGRALVLDFGVFVLVNLYCPAETSE-- 167
Query: 156 VRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFR 201
RI FK F +L +GR I VVGD+NI +D CD F + E R
Sbjct: 168 ARIPFKANFHRLLGERLRILRTEGREIIVVGDINICSTPLDHCDFTLPSTHETFFERETR 227
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+W R +L E G F DV R HP R+ YTCW + A + NYGTRID+ILC
Sbjct: 228 VWMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARESNYGTRIDYILCTS------ 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYM-------- 312
G P KGG + ++GSDH PVY+
Sbjct: 281 ---------------------------GLVPWMKGGDIQASVKGSDHCPVYVDLHDEIVG 313
Query: 313 ----------CLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVS 345
+ ++PE P P LA+ Y + Q L S
Sbjct: 314 EDRNVVKLRDAMKQIPE-PHAPPPRLAACYWDVFSTRQTVLGS 355
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 607
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 608 CGYFKWA 614
C YFKW
Sbjct: 583 CDYFKWG 589
>gi|301792507|ref|XP_002931219.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ailuropoda melanoleuca]
gi|281349729|gb|EFB25313.1| hypothetical protein PANDA_022064 [Ailuropoda melanoleuca]
Length = 516
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/388 (31%), Positives = 185/388 (47%), Gaps = 83/388 (21%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + P+AAEEG +GLL T
Sbjct: 62 IIEGYNSYFSFSRN----RSGYSGVATFCK--------DSVTPMAAEEGLSGLLATHNGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD+ R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADAGKPERLS 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G GS F D +R P++ A+TCW + +GA NYG+R+D++
Sbjct: 230 SNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYV---------- 279
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
L V D D R + GSDH PV L V +P
Sbjct: 280 --LGDRTLVI------DTFQDSFRLP-------------EVMGSDHCPVGAVL-SVSSMP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMK 349
P L +R+LP G Q ++ L++
Sbjct: 318 AKQCPPLCTRFLPEFAGTQLKILRFLVR 345
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKKPGP GR F++CAR +GP ++P + C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPQGPPTDPSSRCNFFLWS 513
>gi|307105550|gb|EFN53799.1| hypothetical protein CHLNCDRAFT_136485 [Chlorella variabilis]
Length = 1072
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/333 (35%), Positives = 165/333 (49%), Gaps = 90/333 (27%)
Query: 2 KIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+++++NVNGLR R +L + L S +ADI+C QETKLRR ++ DL + DG+++FF
Sbjct: 11 RVLSFNVNGLRALLRDRLKLTLSQFLISLNADIVCMQETKLRRCDIDRDLAIVDGWDAFF 70
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET------------S 107
SC++++ TGYSG AT+ R T VALP A+EEGFTG +
Sbjct: 71 SCSQSA----TGYSGTATYVR-------TAVALPFASEEGFTGCAALAAAMAGTTAGSHN 119
Query: 108 GSKIME----GLED-FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQF 160
G+ M L D ++ +EL ++D EGR +TDHG F+LFN+YGP ++ R+Q+
Sbjct: 120 GAATMAEPHPALADQYTVEELAELDGEGRVTVTDHGAFVLFNIYGPAITKQEVAEDRMQY 179
Query: 161 KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAK--NEFRIWFRSML- 208
KL+FF L QGR + VGDLNI P +D A F + R+W R +L
Sbjct: 180 KLRFFSALELRWRDLLRQGRAVVAVGDLNICPTPLDYPVADLQFFRPSRPDRLWLRRLLH 239
Query: 209 --------------------------VESGGS--------------------FFDVFRSK 222
S G+ D FR+
Sbjct: 240 GSTTTGGSNSGGGGGDQSPPAAAAAAAGSNGNGVAGIYGAGASSSNGGSGGILVDTFRAF 299
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
HP R+ A+TCW + T A NYG+RID +L AG
Sbjct: 300 HPTRQNAFTCWSTATSARVNNYGSRIDLVLTAG 332
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGP----TFGRRFFVCARAEGPASNPEANCG 609
WR IQQ + +P C GH+EP V + V K GP GR F+ CAR +GP P C
Sbjct: 564 WRTIQQRFQ--VPQCPGHREPAVLKKVNKSGPNKGNAAGRYFYTCARPDGP--KPHGKCE 619
Query: 610 YFK 612
+FK
Sbjct: 620 FFK 622
>gi|336366993|gb|EGN95339.1| hypothetical protein SERLA73DRAFT_171084 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379716|gb|EGO20871.1| hypothetical protein SERLADRAFT_477369 [Serpula lacrymans var.
lacrymans S7.9]
Length = 618
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 178/689 (25%), Positives = 282/689 (40%), Gaps = 156/689 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + + S + +L+ ADIICFQE K+ R ++ D+ + D Y
Sbjct: 1 MRILSWNINGIRTLPQYHPWNSYKSCQAILEQLQADIICFQEMKITRSAIERDVAVPDTY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
SFFS +KG GYSGV + ++ A+P+ EEG +G ++
Sbjct: 61 ASFFSFP--INKG--GYSGVGVYADART-------AVPLKGEEGLSGKIQPKPQLSADEQ 109
Query: 109 -------SKIMEGLED---FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
S M+ L D + +L +D+EGR ++ D G F+L N Y P S+ R+
Sbjct: 110 ISKSYPCSHEMKLLPDELGNTPSDLSVLDAEGRAIVLDFGLFVLINTYCPNETSD--ARL 167
Query: 159 QFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWF 204
FK+ + ++LQ GR + VVGD+NI +D CD F ++ R WF
Sbjct: 168 PFKMNYHYMLQERVRGLMEEGREVLVVGDINICATPLDHCDGNLASNASYFHEHPARAWF 227
Query: 205 RSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 264
S L + G D+ R P+R+ YTCW + A + NYGTR+D+IL
Sbjct: 228 HSWL-DPTGHMIDIVRRFWPDRKGMYTCWNTKISARETNYGTRVDYILV----------- 275
Query: 265 QSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCLGEVPEI-- 320
+H V W G + L+GSDH P+Y+ L + +
Sbjct: 276 -THGLVP----------------------WVKHGDIQPSLKGSDHCPIYIDLHDSITLDS 312
Query: 321 --------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLP 366
+ P +A++Y G +QTL+S +K+G + SG+ P
Sbjct: 313 GVKLHLRDVMQMNGEKREPPRIAAKYWEEFSG-KQTLLSTFF----SKKGGALP-SGASP 366
Query: 367 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 426
+ + T S + + S LQ N + + S+ S
Sbjct: 367 SPAELTPVVTGPSVTLPAEV-----STTLQVTPVRLPNTSGAS--STSSSQPPYSSKQTS 419
Query: 427 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS---NVSHDDNNSITDTSL 483
+ +Q P + RK +KK + GQ SL +FF + S + H + S + L
Sbjct: 420 APSPSQKRKLLTEP--RESMRKASKKVKKGQTSLSTFFSQPSASQTLPHTPSVSRMEDVL 477
Query: 484 NVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLD 543
+ ++ T+ P+ + S DY ++ EL + S +
Sbjct: 478 VILHADTN--------PDGYIAS------DYRMAL-ELSNSQEKIVSQSCASATSSSSHN 522
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
K W Q L P C H EP V KPGP G+ FF+C+R GP +
Sbjct: 523 KT-------AWS--QLLAPVQPPKCLVHGEPAKEFTVHKPGPNKGKNFFICSRPVGPGYD 573
Query: 604 P------------EANCGYFKWAFSKSKQ 620
+ C +FKW+ K+
Sbjct: 574 KGKAERLREEVDHQYRCNFFKWSSEVKKE 602
>gi|320163021|gb|EFW39920.1| apurinic/apyrimidinic endonuclease 2 [Capsaspora owczarzaki ATCC
30864]
Length = 734
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 169/380 (44%), Gaps = 102/380 (26%)
Query: 14 RVSQFGSLR--------KLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTS 65
+ S FG +R +LLD+ ADI+CFQETKL ++ ++ + DGY++FFS +
Sbjct: 192 QASGFGPVRSQRSSLLFQLLDALQADIVCFQETKLTAAQVTEEMALVDGYDAFFSFSIAK 251
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----------------LLETSG 108
D GYSG+AT P+AA++G TG L+T
Sbjct: 252 D----GYSGIAT---------------PIAAQDGLTGRRVVKPPEPSSASVTSVPLQTGD 292
Query: 109 SKIMEGL----EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
+GL D L +DSEGRCV+TDH F+LFN+Y PRADS + R+ FK +F
Sbjct: 293 VIKPDGLLPDYSDMDPTVLDALDSEGRCVVTDHDRFVLFNLYCPRADSAEGERMTFKQEF 352
Query: 165 FHVLQ---------GRRIFVVGDLNIAPAAIDRC--------DAGPDFAKNEFRIWFRSM 207
+ VLQ GR + V GD N+ ID C D DF + R W S
Sbjct: 353 YRVLQLRVNALRTAGRCVIVAGDFNLTHRRIDHCDPENYTTDDGSVDFEAHPSRRWMESF 412
Query: 208 LVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
L E D FR HP YTCW +T A + NYGTRID+I+ +
Sbjct: 413 LAE---GRVDCFRHFHPLLSSRYTCWRVDTRARETNYGTRIDYIV-------------TD 456
Query: 268 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE--IPQHST 325
+ ++ C L TR GSDH PV + IPQ +
Sbjct: 457 QALLPDISGCYHL-------------------TRFPGSDHCPVVITAAPTLRLTIPQRNP 497
Query: 326 PSLASRYLPIIRGVQQTLVS 345
P L +RYLP + G L S
Sbjct: 498 PKLCARYLPGMGGKTVQLTS 517
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 566 PLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
P C GH EPCV R VK GR+F+VC R +G +NPEA+C +FKW
Sbjct: 685 PRCTGHGEPCVERTVKNGSAQNIGRKFYVCGRPKGHTNNPEASCNFFKW 733
>gi|148675569|gb|EDL07516.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_d [Mus musculus]
Length = 530
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 187/396 (47%), Gaps = 89/396 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 9 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 68
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S + + R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 69 VEGYNS----YFSFSRSRSGYSECSCPSPGVATFCK--------DSATPVAAEEGLSGVF 116
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 117 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 176
Query: 154 DTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 202
R+ FK++F+ +LQ G + ++GDLN A ID CDA F ++ R
Sbjct: 177 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 236
Query: 203 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 237 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 293
Query: 256 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 315
+ ++ID + + + GSDH PV L
Sbjct: 294 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 324
Query: 316 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 325 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 387 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 445
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 560
NK+P + ++KG+R A W+ +
Sbjct: 446 TMLEEKNKVP---------------------ESKDEKGER--------TAF--WKSMLS- 473
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 474 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 527
>gi|393240753|gb|EJD48278.1| DNase I-like protein [Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 119/354 (33%), Positives = 164/354 (46%), Gaps = 87/354 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+IVT+N+NG+R + GS R +LD A I+CFQE K RQ+L + DGY
Sbjct: 1 MRIVTWNINGVRTLPKYHPWNGLGSWRAILDGIGASIVCFQEMKTTRQQLDRATALPDGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------- 108
+SFFS + GYSGVA + + A+P AEEG + L+ +
Sbjct: 61 DSFFSFPMQ----KGGYSGVAVYTKRAD-------AVPFKAEEGLSARLQPTKAPLSAEE 109
Query: 109 --SKIMEGLEDFSKD-----------ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S+ ++D + + ++L++D EGR ++ D G F+L N+Y P S+
Sbjct: 110 RVSRAYPDIDDLAAEFIPNDDGSVPQDVLELDGEGRALVLDFGLFVLVNLYCPAETSD-- 167
Query: 156 VRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFR 201
RI FK F +L +GR I VVGD+NI +D CD F + E R
Sbjct: 168 ARIPFKANFHRLLGERLRILRAEGRGIIVVGDINICSTPLDHCDFTLPSTHETFFERETR 227
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+W R +L E G F DV R HP R+ YTCW + A NYGTRID+ILC
Sbjct: 228 VWMRDLL-EPVGPFVDVVRRFHPGRKGMYTCWNTRINARDSNYGTRIDYILCTS------ 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCL 314
G P KGG + ++GSDH PVY+ L
Sbjct: 281 ---------------------------GLLPWMKGGDIQASVKGSDHCPVYVDL 307
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 607
L P C H +P + R K GP G+ F++C+ GP +P+
Sbjct: 523 LAPVKPPCCDVHGKPTLRRTTTKQGPNKGKVFYICSMPLGPGYDAGRGKRLREEVDPQYK 582
Query: 608 CGYFKW 613
C YFKW
Sbjct: 583 CDYFKW 588
>gi|26354044|dbj|BAC40652.1| unnamed protein product [Mus musculus]
Length = 523
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 122/396 (30%), Positives = 187/396 (47%), Gaps = 89/396 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
+GY S + + R+GYS GVATFC+ + A PVAAEEG +G+
Sbjct: 62 VEGYNS----YFSFSRSRSGYSECSCPSPGVATFCK--------DSATPVAAEEGLSGVF 109
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 110 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 169
Query: 154 DTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 202
R+ FK++F+ +LQ G + ++GDLN A ID CDA F ++ R
Sbjct: 170 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 229
Query: 203 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 230 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 286
Query: 256 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 315
+ ++ID + + + GSDH PV L
Sbjct: 287 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 317
Query: 316 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 318 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 353
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 380 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 438
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 560
NK+P + ++KG+R A W+ +
Sbjct: 439 TMLEEKNKVP---------------------ESKDEKGER--------TAF--WKSMLS- 466
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 467 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 520
>gi|392589509|gb|EIW78839.1| DNase I-like protein [Coniophora puteana RWD-64-598 SS2]
Length = 638
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 187/706 (26%), Positives = 275/706 (38%), Gaps = 177/706 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F + +L+ ADIICFQE K R L D+ + D +
Sbjct: 1 MRILSWNINGVRTLPQYHPWNSFKLFQGILEHLKADIICFQEMKTSRTALVKDVAVPDHF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+SFFS + KG GYSGVA + + T + AEEG +G L
Sbjct: 61 DSFFSFP--ASKG--GYSGVAVY-------TDTRTVTALKAEEGLSGTLQPKPPFQTEER 109
Query: 105 ---------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E +EG D D L +D EGR ++ D G F+L NVY P S+
Sbjct: 110 ISRSYPYAHEMDLMSSVEGESDAPSD-LSVLDEEGRGLVIDLGLFVLINVYCPNETSD-- 166
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFR 201
R+ +K+ + +LQ GR++ VVGD+N+ A ID CD F + R
Sbjct: 167 TRLPYKMNYHFMLQERVRKLVAEGRQVMVVGDINVCAAPIDHCDGHLPSNVETFYDHPAR 226
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
WF++ G DV R PER+ YTCW + A NYGTRID++L
Sbjct: 227 AWFQNWR-HPQGEMIDVLRQFWPERKGMYTCWNTKISARDTNYGTRIDYVLVT------- 278
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL----- 314
PG P W G + ++GSDH P+Y+ L
Sbjct: 279 --------------------------PGLMP-WIRHGDIQASVKGSDHCPIYVDLRDEIT 311
Query: 315 ---GEVPEI---------PQHSTPSLASRYLPIIRGVQQTLVSVLMK------------- 349
G++ + Q P +A++ G QQ L + K
Sbjct: 312 TESGKIIYLKDVMPVDGNAQRVPPRIAAKRWDEFSGKQQLLSTFFGKKGKAPATPQADSS 371
Query: 350 ----REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQ 405
+EV K+ + SG+ A S S DT + ++ S++ D G L+ +
Sbjct: 372 QPAAKEVPPATKTRQSSGTRTA-SQSATDTIEHPSSIPESID--VDVGSLKPSPSPTPQP 428
Query: 406 ESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFH 465
S N +S S+ + P A K AKK + GQ S+ SFF
Sbjct: 429 SSTPN------------NPSSQSSSSTAGQKRKLPRAQSAASKPAKKPKPGQSSIASFFA 476
Query: 466 KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVH-----E 520
+ S N+ TS+ + TD + + V ++ DY ++ E
Sbjct: 477 QPLAPSFSPPNT---TSIASRSQDTDRNPDRGPVTLPISAADPDLDADYQLALKLSQELE 533
Query: 521 LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 580
V + S + K W + + + P C H EP V
Sbjct: 534 AEPVPPAATSTKESSKA----------------WSNL--MAPVAAPNCTVHDEPTKLYTV 575
Query: 581 KKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKWA 614
K GP G+ F++C+R GP N E C YFKWA
Sbjct: 576 NKQGPNKGKTFYLCSRPVGPGYDRGRSERLREEVNHEYRCNYFKWA 621
>gi|225558763|gb|EEH07047.1| DNA lyase Apn2 [Ajellomyces capsulatus G186AR]
Length = 636
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 184/695 (26%), Positives = 284/695 (40%), Gaps = 148/695 (21%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA----------GPDF 195
R F+ F +VL G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEF 228
Query: 196 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 243
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDHGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 244 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 364 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 422
L E +D RS N Y SG GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGYQGSGNAAGGVGIPISAQKASSDISLSAIGRSNIP 427
Query: 423 NVASHSTITQGSSNHISPFHVDRAR-------KKAKKSQ--------LGQLSLKSFFHKR 467
+ +S T N +P +A K+ K+S+ GQ +LK FF +
Sbjct: 428 SPSSTPIATSAEPN--TPKRPQKADDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPK 485
Query: 468 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSS 527
+ + T S + N + +S + E + K P C H+ +G S
Sbjct: 486 T------TSCTTVASADDENDHSKSSATAEGGSPQKGTAIKPPCPSGDCCDHQENGCQQS 539
Query: 528 VC----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
++D+D+ R D N + W ++ + P C GH EPC++ V KK
Sbjct: 540 QTAGPPAYDRDDDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKA 594
Query: 584 GPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 614
G GR F++C+R GP + + C F W+
Sbjct: 595 GINRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|325180868|emb|CCA15278.1| DNA(apurinic or apyrimidinic site) lyase putative [Albugo laibachii
Nc14]
Length = 475
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 179/352 (50%), Gaps = 56/352 (15%)
Query: 2 KIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
KIV++NVNGLR + + L L + A IICFQETKL R EL +L +++F+S
Sbjct: 5 KIVSWNVNGLRAILQRDKVKLNDFLHALQASIICFQETKLTRSELDEELACPKDFDAFYS 64
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKIMEGLED 117
R R GYSGV TF R P +AAEEG TG+ +T G M G +
Sbjct: 65 HCRV----RNGYSGVVTFVRSDLP--------TIAAEEGLTGMWTRKDTIGHVNM-GDAE 111
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR------ 171
L +++SEGR VITDHG FIL NVY P +E+ R+++K+ F +L R
Sbjct: 112 IPSQMLSELESEGRSVITDHGAFILINVYCPAIRNEE--RLEYKIAFHELLTRRIQTLRK 169
Query: 172 ---RIFVVGDLNIAPAAIDRCDAGP----DFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
R+ +VGDLN+A ID C+ +F + R W L+ S D++R +P
Sbjct: 170 ASKRVVLVGDLNVASKRIDHCEPKASEFGEFEAHPCRKWLHR-LISSPAPLRDIYRKLYP 228
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++++A+TCW + T A + NYGTRID+IL Q L +F + E
Sbjct: 229 DKKKAFTCWNTATMARKNNYGTRIDYILVDEKL--QDSVLSCRSFAFKSILE-------- 278
Query: 285 RWKPGNAPRWKGGMSTRLE----GSDHAPVYMCLGEVPEIPQHSTPSLASRY 332
+W ++ RL+ GSDH PV+ + + + TP+LAS++
Sbjct: 279 KWL---------TLAIRLDPERLGSDHCPVFAEIDILFQTACTLTPALASKH 321
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 532 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 591
D+DE KR D+ +W+++ + P+C + +P VAR V K GRRF
Sbjct: 395 DRDEIPKKRKQDQT-------DWKKVLTGQISPTPMCYCN-QPSVARAVVKKNENCGRRF 446
Query: 592 FVCARAEGPASNPEANCGYFKWAFSKSK 619
+VC + G A +P A C YF+WA S K
Sbjct: 447 YVCTKPAGEAGDPNARCNYFQWANSSRK 474
>gi|315047122|ref|XP_003172936.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
gi|311343322|gb|EFR02525.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
Length = 604
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 176/683 (25%), Positives = 283/683 (41%), Gaps = 158/683 (23%)
Query: 1 MKIVTYNVNGLRQRVS--------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
+++ T+NVNG+R S FG++ D +ADI+ FQE K++R++L+ D+V+
Sbjct: 3 LRLTTWNVNGIRNPFSYEPWRGNRTFGAM---FDILEADIVVFQEAKIQRKDLQDDMVLV 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-------- 104
G++ +FS R + GYSGV + R S++ A + AEEG TG L
Sbjct: 60 PGWDCYFSLPRQ----KKGYSGVVIYTR------SSKCAA-IRAEEGITGTLCPPNSSTP 108
Query: 105 --------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ G +E +E+ S+ + +DSEGRC+I + F+L VY P + D
Sbjct: 109 FRQLTASEQIGGYPSVEQMEELSEVDPTTLDSEGRCLIVEFPAFVLIGVYCPA--NRDES 166
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-- 200
R F+L F +L+ G+R+ + GDLNI+PAAID A KN E+
Sbjct: 167 RDGFRLGFLSLLEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVS 226
Query: 201 ---RIWFRSML-----------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 246
R F ++ +E+ D+ R HP R YTCW A NYG+
Sbjct: 227 SPARRLFNGLVRRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNARPGNYGS 286
Query: 247 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306
RID+ILC+ D++ FV ++ E L GSD
Sbjct: 287 RIDYILCS-------DDIRPW-FVESNIQEG------------------------LMGSD 314
Query: 307 HAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT-LVSVLMKREVAKQGKSCKFSGSL 365
H PVY + + T R + I+ + T +++ + + SG L
Sbjct: 315 HCPVYASISD--------TVPFEGRDVHILDIMNPTGAFEDGVEQPRSNKITPLPLSGKL 366
Query: 366 PAESNSTGDTEDCSEN---------VDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 416
E + + +D N + S+ +G+ ++ E +K+
Sbjct: 367 IPEFDRRRNIKDMFRNHSLSRTNSEIKASIATDTQAGLEMPDPVTAKKSALE---SKSPS 423
Query: 417 NCRDSANVASHSTITQG-SSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDN 475
+ + SHS Q S + P ++R +S GQ +L FF
Sbjct: 424 VTMNPPSKRSHSKAAQTPPSKRLKP----KSRPAGARSN-GQQTLAGFFKSER------- 471
Query: 476 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG-VNSSVCSHDQD 534
T +++ N+ T + QE E+ ++ +T S E G + + S D
Sbjct: 472 ---TSRAVSEENATTSSDSPQEAQTEA-----RLTLTSGLSSTMERGGSLPTRAASASPD 523
Query: 535 EKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVC 594
F E W ++ + +P C+GH E C++ V KKPG GR F++C
Sbjct: 524 SSVASLFSQTE-------SWSKM--FTKKPVPKCEGHDEDCISLVTKKPGINCGRSFWIC 574
Query: 595 ARAEGPASNPEAN----CGYFKW 613
+R GP+ + E+ C F W
Sbjct: 575 SRPLGPSGDKESGTPWRCPTFIW 597
>gi|298706356|emb|CBJ29365.1| potential endonuclease [Ectocarpus siliculosus]
Length = 696
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/333 (34%), Positives = 160/333 (48%), Gaps = 65/333 (19%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQEL-KSDLVMADGYESFFS 60
+I+T+N+NGLR+ + G +++LLD F+ADI+CFQE K+ R L + +L A GY FF+
Sbjct: 25 RILTWNINGLRKVAASHGGVQQLLDQFNADIVCFQEIKITRAGLVEHELARAQGYHGFFN 84
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ K YSGVATF R +S + L G + + GS + E S
Sbjct: 85 HCKLPRK--VSYSGVATFVRSESGLKT----LASTTSLGDSAFFGSPGSFVGE--RRLSP 136
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---------RADSEDTVRIQFKLQFFHVLQ-- 169
D L +DSEGR ++TDHGHF+LFNVY P + +ED R FK F L+
Sbjct: 137 DRLAALDSEGRVLVTDHGHFVLFNVYAPCVSSSSDDEKEKTED--RRAFKRDFLATLEAR 194
Query: 170 -------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSML---VESGGSFFD 217
GR + +VGDLN + +D D F + + W R ML D
Sbjct: 195 IFEIRSRGRGVVLVGDLNACASQLDHGFTMTDSEFYASNWSKWIRGMLGLGSPEPPRLVD 254
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
FR HP+R+ A+TCW + TGA NYGTRID+I+ +F + C
Sbjct: 255 CFRHLHPDRKSAFTCWNTQTGARDNNYGTRIDYIIAG------------TDFADRALRAC 302
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
DI+ D+ GSDH PV
Sbjct: 303 DIMPDFL-------------------GSDHCPV 316
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP-ASNPEANCGYFKW 613
S P C+ H EP + R V KPGP RRF+ CAR+ G ++ A C +F+W
Sbjct: 620 SAPTCE-HGEPSIQRTVLKPGPNHNRRFYTCARSAGNWPTDRNARCTFFQW 669
>gi|152002960|gb|ABS19616.1| DNA lyase [Coccidioides immitis]
Length = 625
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 172/691 (24%), Positives = 274/691 (39%), Gaps = 153/691 (22%)
Query: 1 MKIVTYNVNGLR----------QRVSQF--------------GSLRKLLDSFDADIICFQ 36
+++ T+NVNG+R R + F S ++ D + DII FQ
Sbjct: 3 LRLTTWNVNGIRFGIRARLLCIYRTNDFLFRNPFSYQPWRENKSFERMFDILEGDIIVFQ 62
Query: 37 ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96
ETK+++++L+ D+V+ G++ FFS R + GYSGV + R + P+ A
Sbjct: 63 ETKIQKRDLRDDMVLIPGWDCFFSLPRH----KKGYSGVVIYTRCSA-------CSPIRA 111
Query: 97 EEGFTGLLETSGSKI----------MEGLEDFSKDELLKID-----SEGRCVITDHGHFI 141
EEG TG L + GS + + G + ELL ID SEGRCVI + F+
Sbjct: 112 EEGLTGTLSSPGSPLPYRELPEDDQIGGYPTPEQLELLPIDPVTIDSEGRCVILEFPAFV 171
Query: 142 LFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC--- 189
L VY P + D R F+ F +VL G+R+ ++GD+NI+ ID
Sbjct: 172 LLGVYCPA--NRDETRDVFRAAFLNVLDMRVRNLTAMGKRVVLMGDMNISREVIDSAHVI 229
Query: 190 -------DAGPDFAKNEFRIWFRSMLVESGGS----------FFDVFRSKHPERREAYTC 232
+F + R F + LV GG+ DV R HP+R YTC
Sbjct: 230 EAIRKGKTTETEFLSSPSRRLF-NQLVGGGGARAKDSEDTPVLLDVCRKFHPDRLGMYTC 288
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W A NYG RID++LC+ +D + W
Sbjct: 289 WEQRVNARPGNYGARIDYVLCS--------------------------VDMEDWFT---- 318
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREV 352
+ + L GSDH PVY + + +T L P G+ + + R+
Sbjct: 319 --ESNIQEGLMGSDHCPVYGIINDTVSCRNMNTNILDIMNPP---GIFRAGI-----RKQ 368
Query: 353 AKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT 412
S SG L E + +D + + + + L S +
Sbjct: 369 PLTSSSLPLSGRLIPEFHRRRSLKDMFQTASGASDRMTNQLPLASQLSISCDFHEPNSSV 428
Query: 413 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFHK--- 466
++ ++++ + N + RA+K + GQ +L SF +
Sbjct: 429 SNLKKEEKDTSISNKGQPKRALENWTALSPAKRAKKVGNTTSTAAKGQQTLASFVKQSRP 488
Query: 467 RSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNS 526
R + ++ S LNV + + + + + PES + N S S++ + ++
Sbjct: 489 RQTFTLEEPRS---EILNVPDEIKEHTGNVRASPESSYLDN-------SSSIYLMESPHT 538
Query: 527 SVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPT 586
+ G+R + + + A L + + P C+GH EPC+ V KKPGP
Sbjct: 539 PT----DPTEVGERAISSAKESWAKL-------FTKKAPPRCEGHDEPCILLVTKKPGPN 587
Query: 587 FGRRFFVCARAEGPASNPEAN----CGYFKW 613
GR F++C R GP+ N E C F W
Sbjct: 588 CGRSFWICPRPLGPSGNKEIGTPWRCSTFIW 618
>gi|119493288|ref|XP_001263834.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
gi|119411994|gb|EAW21937.1| DNA lyase, putative [Neosartorya fischeri NRRL 181]
Length = 622
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 167/663 (25%), Positives = 265/663 (39%), Gaps = 135/663 (20%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ FQETK++R++L+ D+V+ G++ +FS +T + GYSGV +
Sbjct: 19 TFESMFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPKT----KKGYSGVVIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G +E L + D
Sbjct: 75 R-------NATCCPIRAEEGLAGVLCPPNSSVSFRDLPEEQQVGGYPTIEQLSELEVDAA 127
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
+DSEGRCVI + F+L +Y P + D R F+ F ++ G+R+F
Sbjct: 128 -TLDSEGRCVILEFPAFVLLGIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVF 184
Query: 175 VVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------G 213
V GDLNIA ID A K +EF R F +L +
Sbjct: 185 VTGDLNIAKGEIDAAHATEAIRKGTVTEDEFISVPARRVFNQLLSDGRVIGQRDEGREIP 244
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
FD+ RS HP RR YTCW A NYG+RID++LC+ D+Q F +
Sbjct: 245 VLFDICRSFHPGRRGMYTCWEQRIIARPGNYGSRIDYVLCS-------LDMQDW-FSDSN 296
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 333
+ E L GSDH PVY +V + + L
Sbjct: 297 IQEG------------------------LMGSDHCPVYAVFKDVVRLGEKEVSILDIMNP 332
Query: 334 PII----RGVQQTLVSVLMK---REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 386
P + + Q+ L+ R + + K +S++ T + R
Sbjct: 333 PGMFKDGQRQQEYSTKYLLPTSGRLIPEFDKRRSIKDMFSRKSSTNAQTPTTNPPALRRF 392
Query: 387 NNYCDSGILQGVYCSSSNQE-SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 445
+ + V S+++Q + + T+TI+ R + S P V R
Sbjct: 393 ASTQGTETPTAVSESTTSQSVAVSDSTQTIQIVRKRSQ----------KSETGFPVSVKR 442
Query: 446 AR----KKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE 501
++ + + S GQ +LK FF +++ + +I S +V+ T+ S + P
Sbjct: 443 SKSGSAQPSAPSSAGQRTLKGFFKPKTDPAG--QATIARDSASVSTVPTNQSAAFPRKPT 500
Query: 502 SHHHSNKIPVTDYSCSVHELHG------VNSSVCSHDQDEKKGKRFLDKERNNVALLEWR 555
+ + + L G ++ S D+ KE +W
Sbjct: 501 PVTEPTALEAIPTAPAGEALPGEQPNSATTTTPASSQNDDTVHDPIASKE-------DWS 553
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 611
++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C F
Sbjct: 554 KL--FTKRPVPRCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTF 611
Query: 612 KWA 614
WA
Sbjct: 612 IWA 614
>gi|351705897|gb|EHB08816.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Heterocephalus glaber]
Length = 518
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/389 (30%), Positives = 179/389 (46%), Gaps = 83/389 (21%)
Query: 2 KIVTYNVNGLRQRVS----------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
++V++N+NG+R + ++ + L+ ADI+C QETK+ R L L +
Sbjct: 3 RLVSWNINGIRSPLPGAVCQESNNCPSETMGRTLEELGADIVCLQETKVTRDVLTEPLAI 62
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S+FS +R S GVATFC+ + A PVAAEEG +GL T +
Sbjct: 63 VEGYNSYFSYSRVSSLS----PGVATFCK--------DSATPVAAEEGLSGLFATQNGNV 110
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY PR D E R+ F
Sbjct: 111 GCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPRVDPEKPERLTF 170
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 208
K+ F+H+LQ G + ++GDLN A ID CDA F ++ R W +L
Sbjct: 171 KMSFYHLLQIRAEALLAAGSHVIILGDLNTAYRRIDHCDAVNLECFEEDPGRKWMDGLLN 230
Query: 209 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
++G G F D +R P++ A+TCW GA NYG R+D+IL
Sbjct: 231 NLECQAGSHMGPFIDTYRYFQPQQEGAFTCWSVVNGARHLNYGCRLDYIL---------- 280
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ +++D + + + GSDH PV L V +P
Sbjct: 281 ------------GDRSLVMDTFQ---------ASFLLPEIMGSDHCPVGAVLN-VSSVPA 318
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P L +R+ P G Q ++ L+ E
Sbjct: 319 KHCPPLCTRFFPEFAGTQLKILRFLVPLE 347
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
+PLC+GH+EPCV R VKKPGP GRRF++CAR +GP S+P + C +F+W
Sbjct: 466 MPLCRGHREPCVMRTVKKPGPNLGRRFYMCARPQGPPSDPSSRCNFFQW 514
>gi|393221878|gb|EJD07362.1| DNase I-like protein [Fomitiporia mediterranea MF3/22]
Length = 669
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 190/724 (26%), Positives = 280/724 (38%), Gaps = 183/724 (25%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+++T+N+NG+R + + +L+ +L+ ADIICFQE K RQ + + + + Y
Sbjct: 1 MRLLTWNINGIRTLPQYHPWNTLKSGDGILNELGADIICFQEVKSTRQTIDKSVALPESY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
++FFS + GYSGV+ + + +P+ AEEG +G L++ +
Sbjct: 61 DAFFSFPAI----KGGYSGVSVCTK-------SSRVVPLKAEEGISGRLQSGLKPPLSAE 109
Query: 116 EDFSK------------DE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
E S+ DE L+++D EGR ++ D G F+L NVY P S+
Sbjct: 110 ERISQVIPDAHEMVLLEDEASKTHMDLIELDKEGRALMLDFGLFVLINVYCPNETSD--A 167
Query: 157 RIQFKLQFFHVLQ----------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF-----R 201
R+ +K+ F +LQ R + VVGD+N+ A ID CD K EF R
Sbjct: 168 RLPYKMNFHLLLQERVRLLTEVDKREVIVVGDINVCAAPIDHCDGELPSNKEEFWVHPAR 227
Query: 202 IWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ- 260
WF L G +D+ R+ PER+ YTCW A NYGTRID+ L L
Sbjct: 228 KWFHEWL-HPIGPMYDIVRNCWPERKGMYTCWNQKIDARTTNYGTRIDYFLLTKGLLPWF 286
Query: 261 KH-DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL----- 314
KH D+Q+H ++GSDH PVY+ L
Sbjct: 287 KHGDIQAH----------------------------------VKGSDHCPVYIDLHDQIT 312
Query: 315 ---GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVA---------- 353
G+ + + P LA+++ G QQ L S K+
Sbjct: 313 DEGGDTLYLKDMLKMNGEKRDPPRLATKFWVEYSGKQQVLSSFFGKKAATASESDLAIAS 372
Query: 354 ------KQGKSCKFSGSLPAESNSTGDTEDCSENVDRS--LNNYCDSGILQGVYCSSSNQ 405
GKS + S PA ++S E S + ++ +Y I
Sbjct: 373 TVSIRPASGKSSTVA-STPATTDSGKTREIESREISKADESKSYNQEAIFPPPVPEEKIA 431
Query: 406 ESEGEFTKTIENCRD---------SANVASHSTI------TQGSSNHISPFHVDRARK-- 448
S TI + + SA VA+ + Q SN+ P + K
Sbjct: 432 RSSTSSNLTIISSTNDPHSNGSLSSATVAAEAAPPLKRKKMQADSNY--PAQAPKKSKKG 489
Query: 449 ------KAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPES 502
K K+S Q+ L SFF ++ + S D +EE P
Sbjct: 490 NSAPKLKGKESTTAQMKLSSFFSGPTS----------------SQSQADVDDKEEESPIR 533
Query: 503 HHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLME 562
S I V D + + V S V G +K N+ W + +E
Sbjct: 534 SQKSEVIDV-DALLNDSDALTVQSEVQLSPPVTVPGSSRTEKGNNSHT---WSTLFARIE 589
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGY 610
P C H E C V KPGP G+ FF+CAR GP N + C +
Sbjct: 590 P--PKCVVHGEACREFTVNKPGPNKGKAFFICARPVGPGYDAGKDRRLREEVNSQYRCNF 647
Query: 611 FKWA 614
FKW+
Sbjct: 648 FKWS 651
>gi|359324281|ref|XP_003640323.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Canis
lupus familiaris]
Length = 517
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 120/391 (30%), Positives = 189/391 (48%), Gaps = 89/391 (22%)
Query: 1 MKIVTYNVNGLRQRVSQF----------GSLRKLLDSFDADIICFQETKL--RRQELKSD 48
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R +++
Sbjct: 2 LRVVSWNINGIRSPLQGMVYEEPSNCAAMAMGRILDKLDADIVCLQETKVTSERSKIQDP 61
Query: 49 LVMADGYES--FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET 106
L + +GY S FFS + R+GYSGVATFC+ + A P+AAEEG +GLL T
Sbjct: 62 LAIIEGYNSYSFFS------RNRSGYSGVATFCK--------DSATPMAAEEGLSGLLAT 107
Query: 107 SGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDT 155
+ +++F+++EL +DSEGR ++T H L NVY P AD+
Sbjct: 108 HNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKQKTLTLINVYCPHADAGKP 167
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWF 204
R+ FK++F+ +LQ G + ++GDLN A ID DA F ++ R W
Sbjct: 168 ERLTFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWM 227
Query: 205 RSMLVESG---GS----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
+L G GS F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 228 DGLLSNLGCQAGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL----- 282
Query: 258 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
+ ++ID + + + GSDH PV L V
Sbjct: 283 -----------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SV 315
Query: 318 PEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 348
+P P L +R+LP G Q ++ L+
Sbjct: 316 SSVPAKQCPPLCTRFLPEFAGTQLKILRFLV 346
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH+EPCV R VKKPGP GR F++CAR GP ++P + C +F W+
Sbjct: 465 MPLCGGHREPCVMRTVKKPGPNLGRHFYMCARPRGPPTDPSSRCNFFLWS 514
>gi|405960123|gb|EKC26070.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Crassostrea gigas]
Length = 527
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 180/403 (44%), Gaps = 106/403 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T+N+NG+R + L +L DS DAD+IC QETK+ R L + +GY S+FS
Sbjct: 1 MKILTWNINGIRASKIK---LSELFDSLDADVICLQETKVTRDMLDEPTAIVEGYNSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG------ 114
+ K R+GYSGVATFC+ A PV AEEG L +EG
Sbjct: 58 FS----KKRSGYSGVATFCKAS--------ATPVEAEEGLYKELNPK----LEGKVGHYG 101
Query: 115 -LEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKLQF 164
+ +FS DEL +D+EGR VIT H + NVY PR D + R+ +KL+F
Sbjct: 102 DVSEFSSDELEALDAEGRAVITKHKIRKHDGVEAELAIINVYCPRVDPDREDRLLYKLRF 161
Query: 165 FHVLQGR---------RIFVVGDLNIAPAAIDRCDAGP-DFAKNEFRIWFRSML------ 208
F +LQ R + V+GD+N+ +IDR + R+W +
Sbjct: 162 FALLQTRAEALLQSGCNVIVLGDMNVKHKSIDRSEEDEVGTVTTPSRVWVNQFVWDKDQD 221
Query: 209 -----VES------------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
VE+ GG F D FR +P++ AYT W + T A + NYG R+D+I
Sbjct: 222 PSIAAVENKEDFAGTTSSVRGGLFVDSFRYFYPDQTGAYTNWCTLTSARETNYGRRLDYI 281
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV- 310
+ + +C IL D +EGSDH PV
Sbjct: 282 FT------------NVELAQSDLKDCVILAD-------------------VEGSDHCPVK 310
Query: 311 --YMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
YM I P L ++++P G Q L S MKRE
Sbjct: 311 AEYM----AEFISAEKCPPLCTKHMPEFCGKQIKLSSFFMKRE 349
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 40/53 (75%)
Query: 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 619
LCKGH+E CV R VKKPGP G++FFVCAR EG ++NPEA C +FKW K K
Sbjct: 475 LCKGHQEACVLRTVKKPGPNKGKQFFVCARGEGHSTNPEARCDFFKWVDYKKK 527
>gi|109499818|ref|XP_223499.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
gi|109500734|ref|XP_001059968.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Rattus
norvegicus]
Length = 516
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 185/389 (47%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR ++T H L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 208
K++F+ +LQ G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLS 229
Query: 209 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 230 NLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
D++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R+VKKPGP GR F+ CA+ +GP ++ ++C +F W+
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGPNLGRHFYTCAKPQGPPNDLSSSCNFFLWS 513
>gi|149047282|gb|EDL99951.1| rCG36041 [Rattus norvegicus]
Length = 485
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/389 (30%), Positives = 185/389 (47%), Gaps = 82/389 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R+ + G +LR +L DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRRPLQGLGCEVTSNCPTALRHILRELDADIVCLQETKVSRDALTEPLAV 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + PVAAEEG +G T +
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSVTPVAAEEGLSGQFATLSGHV 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQF 160
+ +F++++L +DSEGR ++T H L NVY P A + R+ F
Sbjct: 110 GCYGNMNEFTQEQLRALDSEGRALLTQHKICTQEGKEKPLTLINVYCPHASPGNHERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML- 208
K++F+ +LQ G + ++GD+N A ID C+AG F ++ R W +L
Sbjct: 170 KMRFYRLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLS 229
Query: 209 ---VESG---GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
+G G F D +R +P++ A+TCW +GA NYGTR+D+IL
Sbjct: 230 NLEYPAGSHIGPFMDSYRYFYPKQERAFTCWSMISGARSLNYGTRLDYIL---------- 279
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
D++ID + + + GSDH PV L V +P
Sbjct: 280 ------------GNRDLIIDTLQ---------DAFLLPEVMGSDHCPVGAVL-NVSCVPA 317
Query: 323 HSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
P+L +R+LP G Q ++ L+ E
Sbjct: 318 KQCPALCTRFLPEFAGTQLKILGFLVPCE 346
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGP 585
+ +PLC GH+EPCV R+VKKPGP
Sbjct: 462 SPMPLCGGHREPCVMRIVKKPGP 484
>gi|296804272|ref|XP_002842988.1| ap endonuclease [Arthroderma otae CBS 113480]
gi|238845590|gb|EEQ35252.1| ap endonuclease [Arthroderma otae CBS 113480]
Length = 574
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 164/649 (25%), Positives = 265/649 (40%), Gaps = 141/649 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +AD++ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 1 MFDILEADVVIFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ---SSKCAA-IRAEEGITGTLCPPNSSTQFRHLPASEQIGGYPTIEQMEELSEIDPVALD 109
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGD 178
SEGRC+I + F+L VY P + D R F+L F ++L G+R+ + GD
Sbjct: 110 SEGRCLILEFPAFVLIGVYCPA--NRDESRDGFRLGFLNILDARVRNLIKMGKRVVLTGD 167
Query: 179 LNIAPAAIDRCDAGP----------DFAKNEFRIWFRSML-----------VESGGSFFD 217
LNI+PA ID A ++ + R F +++ VE+ D
Sbjct: 168 LNISPAPIDSAPATERIRKSAETEEEYISSPARCLFNTLVRRVGSTGDADNVETPPVLRD 227
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HP R YTCW A NYG+RID+ILC+ D H FV ++ E
Sbjct: 228 LCREFHPHRTGMYTCWEQRVNARPGNYGSRIDYILCS--------DDIRHWFVESNIQEG 279
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 337
L GSDH PVY +G+ + L I+
Sbjct: 280 ------------------------LMGSDHCPVYASIGDRVRLDGKDV-----HILDIMN 310
Query: 338 GVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS-LNNYCDSGILQ 396
+ + R V + SG + E + + +D + S N+
Sbjct: 311 PIGSFEDGIEQPRPV--KISPLPLSGKMIPEFDRRRNIKDMFKKHSLSRTNSEIKVSAET 368
Query: 397 GVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL- 455
Y S +S + +EN + + G +SP + + + S+
Sbjct: 369 DTYTGSETSDSGSQSKIAMENKNTPLTMNPPTKRGHGKVAQVSPSKRLKQKSRPVGSRSN 428
Query: 456 GQLSLKSFF--HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 513
GQ +L FF + S V ++N +++ S P+ H + TD
Sbjct: 429 GQQTLAGFFKSERTSRVVGEENATVSTIS-----------------PQGSHAETQPNPTD 471
Query: 514 YSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL-----EWRRIQQLMETSIPLC 568
+ E N +V + + K F+D + VA W ++ + +P C
Sbjct: 472 EPSATAE---ANDTVPT-----ETTKTFVD---DYVAFSCSPTESWSKV--FTKKPVPKC 518
Query: 569 KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
+GH E C++ V KKPG GR F++C+R GP+ + E C F W
Sbjct: 519 EGHDEDCISLVTKKPGMNCGRSFWICSRPLGPSGDKETGTPWRCPTFIW 567
>gi|410988667|ref|XP_004000602.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Felis
catus]
Length = 514
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 186/388 (47%), Gaps = 83/388 (21%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSL--RKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++NVNG+R + S + ++ ++LD DADI+CFQETK+ R L L
Sbjct: 2 LRVVSWNVNGIRSPLQGMIYEEPSNYAAMVVGRILDKLDADIVCFQETKVTRDVLTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S + + R+GYSGVATFC+ + A PVAAEEG +GLL T
Sbjct: 62 ITEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGLLATQKGD 109
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 110 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKILTLINVYCPHADPGKPERLA 169
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +L+ G + ++GDLN A ID DA F ++ R W +L
Sbjct: 170 FKMRFYSLLKIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLL 229
Query: 209 VESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
G G F D +R P++ A+TCW + +GA NYG+R+D++L
Sbjct: 230 SSLGCQTGSHVGPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVL--------- 280
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIP 321
+ ++ID + + + GSDH PV L V +P
Sbjct: 281 -------------GDRTLVIDTFQ---------DSFLLPEVMGSDHCPVGAVL-SVSSVP 317
Query: 322 QHSTPSLASRYLPIIRGVQQTLVSVLMK 349
P L +R+LP G Q + L++
Sbjct: 318 AKECPPLCTRFLPEFAGTQLKIRRFLVR 345
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
S+PLC+GH+EPCV R VKKPGP GR F+VCAR +GP ++P + C +F W+
Sbjct: 461 SMPLCRGHREPCVRRTVKKPGPNLGRHFYVCARPQGPPTDPSSRCNFFLWS 511
>gi|320036533|gb|EFW18472.1| DNA lyase [Coccidioides posadasii str. Silveira]
Length = 600
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 187/685 (27%), Positives = 271/685 (39%), Gaps = 167/685 (24%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G+
Sbjct: 3 FRLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKI 111
+ FFS K + GYSGVA + R P+ AEEG TG+L TS +
Sbjct: 63 DCFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYRE 111
Query: 112 M---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + DE L +DSEGRCVI + F+L VY P + D R F
Sbjct: 112 LPESEQIGGYPTDEQLSTSEVSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFR 201
+L F + L G+R+ V GDLNI+ AID A +F + R
Sbjct: 170 RLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAIDSAHALEQIRKSRLTTDEFLSSPAR 229
Query: 202 IWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
I F + LVE G +D+ RS P R YTCW A N+G RID
Sbjct: 230 IIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARID 288
Query: 250 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 309
+ILC+ +D K W + L GSDH P
Sbjct: 289 YILCS--------------------------LDMKDWMS------IADIQEGLMGSDHCP 316
Query: 310 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CKFSG 363
VY E + + G Q V+++ + E A+ S SG
Sbjct: 317 VYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAAENSLSRSHLPLSG 360
Query: 364 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 423
L E N + D + SS+ S GE + + N
Sbjct: 361 RLIPEFNRRRNIRD------------------MFLRQSSTQNLSPGEINQNATSMSSMTN 402
Query: 424 VASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVSHDD 474
++ S+ I R +K+ L Q S++ FF+ K+SN++ D
Sbjct: 403 KGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFNPRQPRLKQSNLAK-D 461
Query: 475 NNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHD 532
+I D+ N N+S S P+++ P T + + V S + +
Sbjct: 462 CEAINDSVPNERKNDSGPGHRTSGISPPDANPDFEADPQTSQESTT--VSAVPSRIVA-- 517
Query: 533 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
D D+E W +I + P C+GH+EPCV V KKPG GR F+
Sbjct: 518 -DINVMSSIPDQE-------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKPGINRGRSFW 567
Query: 593 VCARAEGPASNPEAN----CGYFKW 613
+C R GP+ N E C F W
Sbjct: 568 ICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|146323277|ref|XP_754988.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|129558370|gb|EAL92950.2| DNA lyase Apn2 [Aspergillus fumigatus Af293]
gi|159128003|gb|EDP53118.1| DNA lyase Apn2 [Aspergillus fumigatus A1163]
Length = 648
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 181/709 (25%), Positives = 273/709 (38%), Gaps = 166/709 (23%)
Query: 1 MKIVTYNVNGLRQRVSQ----------------FGSL-------RKLLDSFDADIICFQE 37
+I T+NVNG+R S SL + + D +ADI+ FQE
Sbjct: 3 FRITTWNVNGIRNPFSYEPWRGNRTFEVDLPKVLHSLNERLIIEQSMFDILEADIVVFQE 62
Query: 38 TKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAE 97
TK++R++L+ D+V+ G++ +FS +T + GYSGV + R P+ AE
Sbjct: 63 TKIQRKDLRDDMVLVPGWDCYFSLPKT----KKGYSGVVIYTR-------NATCCPIRAE 111
Query: 98 EGFTGLL----------------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFI 141
EG TG+L + G ++ L + D +DSEGRCVI + F+
Sbjct: 112 EGLTGVLCPPNSSVSFRDLPEEQQIGGYPTIKQLSELEIDA-ATLDSEGRCVILEFPAFV 170
Query: 142 LFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAG 192
L +Y P + D R F+ F ++ G+R+FV GDLNIA +D A
Sbjct: 171 LLGIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGELDAAHAT 228
Query: 193 PDFAK-----NEF-----RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYT 231
K +EF R F +L + FD+ RS HP RR YT
Sbjct: 229 EAIRKGAITEDEFISAPARRVFNQLLSDGRVIGQRDEGRESPVLFDICRSFHPGRRGMYT 288
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
CW A NYG RID++LC+ D+Q F ++ E
Sbjct: 289 CWEQRIIARPGNYGARIDYVLCS-------LDMQDW-FSDSNIQEG-------------- 326
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
L GSDH PVY +V + L P + K
Sbjct: 327 ----------LMGSDHCPVYAVFKDVVRLGDKEVNILDIMNPP-----------GMFKDG 365
Query: 352 VAKQGKSCKF----SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQES 407
+Q + K+ SG L E + +D S N + + S E+
Sbjct: 366 QRQQEYTTKYLLPTSGRLIPEFDKRRSIKDMFSR-KPSTNAQTPATNPPALRRFGSTHET 424
Query: 408 EGEFTKTIENCRDSANVASHSTITQ-------GSSNHISPFHVDRAR----KKAKKSQLG 456
E T E+ + S ST T+ S SP R++ + + S G
Sbjct: 425 ETP-TAVSESTAGRSVAVSDSTQTKQIVRKRSQKSEAGSPVSFKRSKSGSAQPSAPSSAG 483
Query: 457 QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC 516
Q +LK FF +++ + +IT S +V+ T+ S++ PVT+ +
Sbjct: 484 QRTLKGFFKPKTDPAG--QATITQDSASVSTVPTNQSVA--------FPRESAPVTELTA 533
Query: 517 SVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-------VALLEWRRIQQLMETSIPLCK 569
+Q RN+ + +W ++ + P C+
Sbjct: 534 LEETRTAPAGEALPGEQPNSTTTTTPASSRNDDTVHDPIASKEDWSKL--FTKKPAPKCE 591
Query: 570 GHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 592 GHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 640
>gi|325094515|gb|EGC47825.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 636
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 184/698 (26%), Positives = 285/698 (40%), Gaps = 154/698 (22%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA----------GPDF 195
R F+ F +VL G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGIRKGTLTDSEF 228
Query: 196 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 243
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 244 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 364 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 422
L E +D RS N SG + GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIG---RS 424
Query: 423 NVASHSTITQGSSNHISPFHVDRAR----------KKAKKSQ--------LGQLSLKSFF 464
N+ S S+ +S P RA+ K+ K+S+ GQ +LK FF
Sbjct: 425 NIPSPSSTPIATSAE--PNTPKRAQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFF 482
Query: 465 HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGV 524
++ + TD S + N + +S + E + K P + C + +G
Sbjct: 483 GPKT------TSCTTDASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGC 536
Query: 525 NSSVC----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVV 580
S ++D+ R D N + W ++ + P C GH EPC++ V
Sbjct: 537 QQSQTAGPPAYDRHNDNSGRVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVT 591
Query: 581 KKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 614
KK G GR F++C+R GP + + C F W+
Sbjct: 592 KKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|115402641|ref|XP_001217397.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
gi|114189243|gb|EAU30943.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
Length = 592
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 170/660 (25%), Positives = 260/660 (39%), Gaps = 145/660 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 1 MFEILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------------MEGLEDFSKDEL--LKIDS 128
P+ AEEG TG+L S +E S+ EL +DS
Sbjct: 54 ----NSTCAPIRAEEGLTGVLCPPNSSTPFRDLPEDQQIGGYPAIEQLSQLELDAATLDS 109
Query: 129 EGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------VLQGRRIFVVGDLN 180
EGRCVI + F+L +Y P R +S D+ R F L V G+R+ V GDLN
Sbjct: 110 EGRCVILEFPAFVLLGLYCPANRDESRDSFRQSF-LDLMDTRLRNLVAMGKRVVVTGDLN 168
Query: 181 IAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GSFFDVF 219
I+ ID+ A DF R F +L E D+
Sbjct: 169 ISAREIDQAPAAEAIRKGTLTEDDFVSAPARRLFNQLLFEGKVLGQRDEGREQPVLHDIC 228
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
R HP+R+ YTCW A NYG+RID++LC+
Sbjct: 229 RMFHPDRKGMYTCWEQRINARPGNYGSRIDYVLCS------------------------- 263
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL------ 333
+D + W + + L GSDH PVY +V +P P +
Sbjct: 264 -LDMRDWIEDS------NIQEGLMGSDHCPVYAIFKDV--VPLDGKPVNIRDIMNPPGVF 314
Query: 334 -----------PIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENV 382
+I L+ KR K S K S + A +T TE
Sbjct: 315 ANGERKQEYTTKLILPTSGRLIPEFDKRRSIKDMFSRKPSAT--ATKGNTIATEPSP--- 369
Query: 383 DRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFH 442
SG Q + E + T T + + A + S I P
Sbjct: 370 ---------SGPQQANAANVCPPEEKPALTPTPSGPQPAQGGARKRS---QRSEPIPPVK 417
Query: 443 VDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDN---NSITDTSLNVNNSVTDTSLSQEE 498
++ + L GQ SLK FF + +V+ D + +D+ + + + +TS ++ +
Sbjct: 418 RSKSTPTPIQGALGGQKSLKGFFKPKVSVTEQDKVGPSRGSDSPGLIPDPLPETSSNEPD 477
Query: 499 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQ 558
+NKI S + +S ++ + F+D V+ +W ++
Sbjct: 478 NSADAQSANKIEGNPDSPRKGQPAAPSS---------QENETFIDP---IVSKEDWSKLF 525
Query: 559 QLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
+ + P C+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 526 S-KKKAAPKCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRCSTFIWA 584
>gi|242813026|ref|XP_002486082.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
gi|218714421|gb|EED13844.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
Length = 642
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 174/668 (26%), Positives = 256/668 (38%), Gaps = 149/668 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S + D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV +
Sbjct: 44 SFNAMFDILEADIVIFQETKIQRKDLRDDMVLVPGWDCYFSLPR----HKKGYSGVVIYT 99
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R E P+ AEEG TGLL + G ME L D D
Sbjct: 100 R-------NETCTPIRAEEGITGLLCSPNSTTPYRHLPDDQQIGGYPSMEQLSDLQVDPA 152
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
+ +D EGRCVI + F+L +Y P A D R F+ F ++L G+R+
Sbjct: 153 V-LDCEGRCVILEFPAFVLLGLYCPAA--RDETRDDFRQGFINLLDARIRNLVSMGKRVI 209
Query: 175 VVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESG------------ 212
V GDLNI+ ID R G + F + R F + LVE
Sbjct: 210 VTGDLNISVGEIDSAHLTEAIRKGTGSEDEFVSSPVRRVF-NQLVEGAKVVGQRDPAREV 268
Query: 213 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 272
D+ RS HP RR YTCW + A NYG RID+IL +
Sbjct: 269 PVLHDICRSFHPGRRGMYTCWETRVNARPGNYGARIDYILSS------------------ 310
Query: 273 HVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 331
+D K W W + + L GSDH PVY + SL
Sbjct: 311 --------LDMKDW-------WSEANIQEGLMGSDHCPVYATFKD--------KISLEGN 347
Query: 332 YLPI--IRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNY 389
+ I I + + +RE + + SG L E +D S
Sbjct: 348 EIDIKDIMNPPGVFKNGIRQREYSTK-DLLPLSGRLIPEFTQRRSIKDMFTRKPSSSLKD 406
Query: 390 CDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA---SHSTITQGSSNHIS------- 439
+ I V S+ E T + E + + + S + SSN +S
Sbjct: 407 SVTPITNVVDEESAPTPPESTITNSAEPFQSPSKPGLYKTQSNASNASSNGLSKRTRKES 466
Query: 440 ----PFHVDRARKK--AKKSQLGQLSLKSFFHKRSNVSHDDNNS---ITDTSLNVNNSVT 490
P ++R K + GQ SL FF + + D N+ I+D L+ +++
Sbjct: 467 APAPPPKRSKSRGKLDTNTTSKGQQSLIGFFKPKKTQDNQDTNTTQEISDRGLDGAFTIS 526
Query: 491 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA 550
T + +P H + + + + DE + KE
Sbjct: 527 PTKSISQVLPSPHKPT----------PTSQTTAQDDGSTTESTDETVIDPIVSKE----- 571
Query: 551 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 607
W ++ + + P C+ H+EPC+ KKPG GR F++C+R GP E
Sbjct: 572 --SWSKL--FTKKATPKCEEHQEPCIMLTTKKPGINCGRAFWMCSRPLGPTGQKEKGTQW 627
Query: 608 -CGYFKWA 614
C F WA
Sbjct: 628 RCKTFIWA 635
>gi|259482425|tpe|CBF76897.1| TPA: DNA lyase Apn2 (AFU_orthologue; AFUA_3G06180) [Aspergillus
nidulans FGSC A4]
Length = 612
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 170/670 (25%), Positives = 254/670 (37%), Gaps = 164/670 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 24 TFESMFDILEADIVVVQETKIQRKDLRDDMVLVPGWDCYFSLPKV----KKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG TG L + G +E L D
Sbjct: 80 R-------NATCAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQLSKLKLDAE 132
Query: 124 LKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------VLQGRRIFV 175
+DSEGRCVI + F+L +Y P R +S D R F L V G+R+FV
Sbjct: 133 -TLDSEGRCVILEFPAFVLIGLYCPANRDESRDAFRQNF-LDLMDARVRNLVALGKRVFV 190
Query: 176 VGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG-----------GS 214
GD+NI+ ID A DF R F +L++
Sbjct: 191 TGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKVVGDRDEGREQPV 250
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 251 LFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS-------------------- 290
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
+D K W + + L GSDH PVY ++ +P
Sbjct: 291 ------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL---------------IP 323
Query: 335 IIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTGDTEDCSENVDRS 385
+ G Q ++ ++ V K G+ + KF SG L E + +D
Sbjct: 324 LNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRRSIKDMFMRKPSQ 382
Query: 386 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHSTITQGS------ 434
+ S Q + SN+ES +T N D+ S+ T+ +G+
Sbjct: 383 PSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSNDTLQKGTVRKRPV 439
Query: 435 SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD-----TSLNVNNS 488
+ P + A + +GQ +LK FF + + DN D +S
Sbjct: 440 GTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDEGQGPAEFPFISS 499
Query: 489 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 548
D + E+ ++ K P E G V S
Sbjct: 500 QQDVT---EQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ---------------- 540
Query: 549 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 607
+W ++ + P C H E C++ KKPGP FGR F++C R GP+ N E
Sbjct: 541 ----DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPRPLGPSGNKEKGT 594
Query: 608 ---CGYFKWA 614
C F WA
Sbjct: 595 EWRCSTFIWA 604
>gi|240275156|gb|EER38671.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 636
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 178/693 (25%), Positives = 279/693 (40%), Gaps = 144/693 (20%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ +ADI+ FQETK++R++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALEADIVIFQETKIQRKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL--LETSGSKIME 113
+ FFS K + GYSGV + R + P+ AEEG TG+ L TSGS +
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSICCPIRAEEGITGILCLPTSGSNLSS 110
Query: 114 --GLEDFSKD-----------------ELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
D ++ + +DSEGRC+I + F+L VY P + D
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLALSDVDAATLDSEGRCMILEFPAFVLIGVYCPA--NRD 168
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA----------GPDF 195
R F+ F +VL G+R+ V GDLNI+ + ID A +F
Sbjct: 169 ETRDGFRTGFVNVLDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEF 228
Query: 196 AKNEFRIWFRSMLVESGG------------SFFDVFRSKHPERREAYTCWPSNTGAEQFN 243
+ R F + LV+ G D+ R HP+R YTCW A N
Sbjct: 229 VSSPVRRIF-NQLVDGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGN 287
Query: 244 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303
YG RID++LC +Q F ++ E L
Sbjct: 288 YGARIDYVLC-------DRSMQDW-FSASNIQE------------------------GLM 315
Query: 304 GSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GSDH PVY L + + S + L I+ + T + KRE + + SG
Sbjct: 316 GSDHCPVYAELKD-----KVSLDGIEVNMLDILN-PKGTFENGQRKREYSP-ADTLPLSG 368
Query: 364 SLPAESNSTGDTEDCSENVDRSLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSA 422
L E +D RS N SG + GV S Q++ + + + +
Sbjct: 369 RLIPEFCQRRSIKDMLFQ-QRSQNGSQGSGNAVSGVAIPISAQKASSDISLSAIGRSNIP 427
Query: 423 NVASHSTITQGSSNHIS------------PFHVDRARKKAKKSQL-GQLSLKSFFHKRSN 469
+ +S T N P + R+ ++ GQ +LK FF ++
Sbjct: 428 SPSSTPIATSAEPNTPKRPQKEDDGTTSRPKRLKRSESSTTTTKAKGQKTLKGFFGPKT- 486
Query: 470 VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVC 529
+ T S + N + +S + E + K P + C + +G S
Sbjct: 487 -----TSCTTVASADDENDHSKSSATAEGDSPQKGTAIKPPCSSGDCCDPQENGCQQSQT 541
Query: 530 ----SHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGP 585
++D+D + D N + W ++ + P C GH EPC++ V KK G
Sbjct: 542 AGPPAYDRDNDNSGKVHDPIANKES---WSKL--FTKKPPPKCDGHDEPCISLVTKKAGI 596
Query: 586 TFGRRFFVCARAEGPA----SNPEANCGYFKWA 614
GR F++C+R GP + + C F W+
Sbjct: 597 NRGRSFWICSRPLGPTGIKKTGDQWRCDTFIWS 629
>gi|392864132|gb|EAS35062.2| exodeoxyribonuclease III (xth) [Coccidioides immitis RS]
Length = 600
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 184/694 (26%), Positives = 267/694 (38%), Gaps = 185/694 (26%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G+
Sbjct: 3 FRLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKI 111
+ FFS K + GYSGVA + R P+ AEEG TG+L TS +
Sbjct: 63 DCFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYRE 111
Query: 112 M---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + DE L +DSEGRCVI + F+L VY P + D R F
Sbjct: 112 LPESEQIGGYPTDEQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFR 201
+L F + L G+R+ V GDLNI+ ID A +F + R
Sbjct: 170 RLGFLNALDHRIRNLISLGKRVVVAGDLNISRDEIDSAHALEQIRKSRLTTDEFLSSPAR 229
Query: 202 IWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
I F + LVE G +D+ RS P R YTCW A N+G RID
Sbjct: 230 IIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFPARSGMYTCWEQRINARPGNFGARID 288
Query: 250 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 309
+ILC+ +D K W + L GSDH P
Sbjct: 289 YILCS--------------------------LDMKDWMS------IADIQEGLMGSDHCP 316
Query: 310 VYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVL---MKREVAKQGKS---CKFSG 363
VY E + + G Q V+++ + E A S SG
Sbjct: 317 VYAIFKENVD----------------LHGDQIDFVNLMNPSVDFEAADNSLSRSHLPLSG 360
Query: 364 SLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSAN 423
L E N + D + SS+ S GE + + N
Sbjct: 361 RLIPEFNRRRNIRD------------------MFLRQSSTQNPSPGEINQNATSMSRMTN 402
Query: 424 VASHSTITQGSSNHISPFHVDRARKKAKKSQL---GQLSLKSFFH------KRSNVSHD- 473
++ S+ I R +K+ L Q S++ FF K+SN++ D
Sbjct: 403 KGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTTSQKSIRGFFSPRQPRLKQSNLAKDC 462
Query: 474 --DNNSITDTSLNVNN--------SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHG 523
N+S+ + N + S D S E P++ S + + + G
Sbjct: 463 EAINDSVPNERKNDSGPGHRTSGISPPDASPDFEADPQTSQESTTV----SAVPSRIVAG 518
Query: 524 VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
+N +Q+ W +I + P C+GH+EPCV V KKP
Sbjct: 519 INVMSSIPEQE------------------SWNKI--FKKRPPPRCEGHEEPCVRLVTKKP 558
Query: 584 GPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
G GR F++C R GP+ N E C F W
Sbjct: 559 GINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 592
>gi|242266565|gb|ACS91130.1| APN2 [Microsporum gypseum]
Length = 596
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 169/649 (26%), Positives = 265/649 (40%), Gaps = 141/649 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPATLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P + D R F+L F +L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML-----------VESGGSFFD 217
LNI+PAAID A KN E+ R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 337
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRNVHILD 329
Query: 338 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS-LNNYCDSGIL 395
+ T +++ + + SG L E + + +D N S N+ + I
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 396 QGVYCSSSNQESEGEFTKTIENCRDSANV-----ASHSTITQG-SSNHISPFHVDRARKK 449
+ +EN S + SHS Q S + P ++R
Sbjct: 390 TDTQAGLEMPDPVTAKKSALENKSPSVTMNPPSKRSHSKAAQTPPSKRLKP----KSRPA 445
Query: 450 AKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKI 509
+S GQ +L FF T +++ N+ T + QE E+ ++
Sbjct: 446 GARSN-GQQTLAGFFKSER----------TSRAVSEENATTSSDSPQEAQTEA-----RL 489
Query: 510 PVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLC 568
+T S E G + + S D F E W ++ + +P C
Sbjct: 490 TLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKPVPKC 540
Query: 569 KGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
+GH E C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 541 EGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|238505976|ref|XP_002384190.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
gi|220690304|gb|EED46654.1| DNA lyase, putative [Aspergillus flavus NRRL3357]
Length = 630
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 177/663 (26%), Positives = 263/663 (39%), Gaps = 146/663 (22%)
Query: 22 RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81
+ + + +ADI+ QETK++R++L+ D+V+ G++ FS R+ + GYSGV + R
Sbjct: 39 KAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWDCHFSLPRS----KKGYSGVVIYTR- 93
Query: 82 KSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLK 125
P+ AEEG TG+L + G E L D
Sbjct: 94 ------NATCAPLRAEEGLTGVLCPPNSSVPFRDLPLDRQIGGYPTTEQLSTLELDAA-T 146
Query: 126 IDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------VLQGRRIFVVG 177
+DSEGRCVI + F+L +Y P R +S D+ R F L V G+R+FV G
Sbjct: 147 LDSEGRCVILEFPAFVLLGLYCPANRDESRDSFRQGF-LDLMDARIRNLVAMGKRVFVTG 205
Query: 178 DLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG------------GSF 215
DLNI+ ID A K +EF R F + LV SG +
Sbjct: 206 DLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQPAL 264
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 265 FDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC---- 311
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VPEIPQHSTPSL------ 328
E DI L GSDH PVY + V + + P +
Sbjct: 312 ESDI-------------------QEGLMGSDHCPVYAIFKDSVNMLDIMNPPGIFDNGER 352
Query: 329 -ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCK---FSGSLPAESNSTGDTEDCSENVDR 384
++ L+ KR K S K S LP S T
Sbjct: 353 RQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKPDMSSQKLPTTSALTA----------- 401
Query: 385 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVD 444
C S I + VY + + S G ++ S T+ + S P V
Sbjct: 402 -----CAS-IREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSEKSDPPPSVK 453
Query: 445 RARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
R++ +++ Q +LK FF + VS + I++T + V S +P
Sbjct: 454 RSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQAMERSSGPLP 508
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN-----VALLEWR 555
S S D + +H V ++ S+ F+ + V+ +W
Sbjct: 509 ASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVIDPIVSKEDWS 564
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 611
++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E C F
Sbjct: 565 KL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCATF 622
Query: 612 KWA 614
WA
Sbjct: 623 IWA 625
>gi|242266571|gb|ACS91135.1| APN2 [Microsporum gypseum]
Length = 596
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 165/653 (25%), Positives = 269/653 (41%), Gaps = 149/653 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPTTLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P + D R F+L F +L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML-----------VESGGSFFD 217
LNI+PAAID A KN E+ R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 337
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRDVHILD 329
Query: 338 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN---------VDRSLN 387
+ T +++ + + SG L E + + +D N + S+
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 388 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISPFHVDRA 446
+G+ ++ E +K+ + + SHS Q S + P ++
Sbjct: 390 TDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAAQTPPSKRLKP----KS 442
Query: 447 RKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
R +S GQ +L FF +R++ + + N+ T + + P+
Sbjct: 443 RPAGARSN-GQQTLAGFFKSERTSRAVSEENATTSS----------------DSPQEAQT 485
Query: 506 SNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETS 564
++ +T S E G + + S D F E W ++ +
Sbjct: 486 EARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKP 536
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
+P C+GH E C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 537 VPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|83773202|dbj|BAE63329.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 636
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 174/671 (25%), Positives = 265/671 (39%), Gaps = 151/671 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + +ADI+ QETK++R++L+ D+V+ G++ FS R+ + GYSGV +
Sbjct: 36 TFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWDCHFSLPRS----KKGYSGVVIYT 91
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG TG+L + G E L D
Sbjct: 92 R-------NATCAPLRAEEGLTGVLCPPNSSVPFRDLPLDRQIGGYPTTEQLSTLELDAA 144
Query: 124 LKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------VLQGRRIFV 175
+DSEGRCVI + F+L +Y P R +S D+ R F L V G+R+FV
Sbjct: 145 -TLDSEGRCVILEFPAFVLLGLYCPANRDESRDSFRQGF-LDLMDARIRNLVAMGKRVFV 202
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG------------G 213
GDLNI+ ID A K +EF R F + LV SG
Sbjct: 203 TGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPARRLF-NQLVYSGKVIGERDEGREQP 261
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+ FD+ RS HP RR YTCW A NYG+RID++LC+ L ++
Sbjct: 262 ALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRIDYVLCS---------LNMQDWFC-- 310
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 333
E DI L GSDH PVY + S+
Sbjct: 311 --ESDI-------------------QEGLMGSDHCPVYAIFKD----------SVC---- 335
Query: 334 PIIRGVQQTLVSVLMKREVAKQGKS---------CKFSGSLPAESNSTGDTEDC-SENVD 383
+ G Q ++ ++ + G+ SG L E + +D S D
Sbjct: 336 --LNGQQVNMLDIMNPPGIFDNGERRQEYTTKLLLPTSGRLIPEFDKRRSIKDMFSRKPD 393
Query: 384 RSLNNYCDSGIL-------QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 436
S + L + VY + + S G ++ S T+ + S
Sbjct: 394 MSSQKLPTTSALTACASIREQVYKIDAEENSLGASKPSLPIADSSPT--PKGTVRKRSEK 451
Query: 437 HISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDT 492
P V R++ +++ Q +LK FF + VS + I++T + V
Sbjct: 452 SDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-TPDTPVQAM 506
Query: 493 SLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN---- 548
S +P S S D + +H V ++ S+ F+ +
Sbjct: 507 ERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQNSETVIDP 562
Query: 549 -VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN 607
V+ +W ++ + +P+C+GH+EPC++ KKPG GR F++C R GP+ N E
Sbjct: 563 IVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKG 620
Query: 608 ----CGYFKWA 614
C F WA
Sbjct: 621 TQWRCATFIWA 631
>gi|242266576|gb|ACS91139.1| APN2 [Microsporum gypseum]
Length = 596
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 165/653 (25%), Positives = 269/653 (41%), Gaps = 149/653 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 23 MFDILEADIVVFQEAKIQRKDLQDDMVLVPGWDCYFSLPRQ----KKGYSGVVIYTR--- 75
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + +D
Sbjct: 76 ---SSKCAA-IRAEEGITGTLCPPNSSTPFRQLTASEQIGGYPSVEQMEELSEVDPTTLD 131
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P + D R F+L F +L+ G+R+ + GD
Sbjct: 132 SEGRCLIVEFPAFVLIGVYCPA--NRDESRDGFRLGFLSLLEARVRNLIKMGKRVILTGD 189
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF-----RIWFRSML-----------VESGGSFFD 217
LNI+PAAID A KN E+ R F ++ +E+ D
Sbjct: 190 LNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLVRRVGSTEETHDIEASPVLRD 249
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HP R YTCW A NYG+RID+ILC+ D++ FV ++ E
Sbjct: 250 LCREFHPNRTGMYTCWEQRVNARPGNYGSRIDYILCS-------DDIRPW-FVESNIQEG 301
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIR 337
L GSDH PVY + + T R + I+
Sbjct: 302 ------------------------LMGSDHCPVYASISD--------TVPFEGRDVHILD 329
Query: 338 GVQQT-LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSEN---------VDRSLN 387
+ T +++ + + SG L E + + +D N + S+
Sbjct: 330 IMNPTGAFEDGVEQPRSNKITPLPLSGKLIPEFDRRRNIKDMFRNHSLSRTNSEIKASIA 389
Query: 388 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISPFHVDRA 446
+G+ ++ E +K+ + + SHS Q S + P ++
Sbjct: 390 TDTQAGLEMPDPVTAKKSALE---SKSPSVTMNPPSKRSHSKAAQTPPSKRLKP----KS 442
Query: 447 RKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
R +S GQ +L FF +R++ + + N+ T + + P+
Sbjct: 443 RPTGARSN-GQQTLAGFFKSERTSRAVSEENATTSS----------------DSPQEAQT 485
Query: 506 SNKIPVTDYSCSVHELHG-VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETS 564
++ +T S E G + + S D F E W ++ +
Sbjct: 486 EARLTLTSGLSSTMERGGSLPTRAASASPDSSVASLFSQTE-------SWSKM--FTKKP 536
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
+P C+GH E C++ V KKPG GR F++C+R GP+ + E+ C F W
Sbjct: 537 VPKCEGHDEDCISLVTKKPGINCGRSFWICSRPLGPSGDKESGTPWRCPTFIW 589
>gi|16904254|gb|AAL30835.1|AF440398_3 DNA lyase-like protein [Zymoseptoria tritici]
Length = 594
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 166/683 (24%), Positives = 260/683 (38%), Gaps = 167/683 (24%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + + D ++DI+ QE K+++++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNNTRSFKSMFDILESDIVVMQELKIQKKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ +FS K + GYSGV + R P+ AEEG G+L++ L
Sbjct: 61 DCYFSLP----KYKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLQSPSGTPYRDL 109
Query: 116 ED----------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+ F EL +D+EGRCVI + F+LF VY P S ++ F+
Sbjct: 110 PESESIGGYPSAFQVAELGVDPAALDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFR 167
Query: 162 LQFFHVL---------QGRRIFVVGDLNIAPAAID----------RCDAGPDFAKNEFRI 202
FF L QG+R+ +VGDLN+ ID R D R
Sbjct: 168 SGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRR 227
Query: 203 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F +L + G +D R HP RR YT W + A N G+RID +
Sbjct: 228 IFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFV 287
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
L A + + V + +I L GSDH PVY
Sbjct: 288 LVA-------------DVMQSWVKDANI-------------------QEGLLGSDHCPVY 315
Query: 312 MCLGEVP----------EI--PQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQG 356
+V EI P STP+ +++ +P R ++ + +K+ + Q
Sbjct: 316 ADFHDVVADDGGNVALLEIMNPPGSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKITSSQL 375
Query: 357 KSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIE 416
+ A++N + D S D++ + D
Sbjct: 376 ERTPSGIDAAAQANVP--SADISPPEDKAAASQSDE------------------------ 409
Query: 417 NCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDN 475
A + + S P + + GQ SLK FF K S V D
Sbjct: 410 --------ARPPSKRKASIPSKEPLPSKKQKDTKVAPSRGQQSLKGFFSSKASPVKPDLK 461
Query: 476 NSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDE 535
+ + L++ + + + + P + S + P S S V + + S ++ +
Sbjct: 462 SQESSQKLSIASPPAEVAFPPPQSPSTTFPSQEPPSPIASAS-PTADQVATQIASAERSQ 520
Query: 536 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 595
+ W + + PLC+GH+EPC KK G GR F++CA
Sbjct: 521 R----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCA 562
Query: 596 RAEGPASNPEAN----CGYFKWA 614
R GP+ E CG F WA
Sbjct: 563 RPLGPSGEKEKGTEWRCGTFIWA 585
>gi|398388271|ref|XP_003847597.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
gi|339467470|gb|EGP82573.1| APN2 DNA lyase apurinic/apyrimidinic [Zymoseptoria tritici IPO323]
Length = 608
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 168/697 (24%), Positives = 263/697 (37%), Gaps = 181/697 (25%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + + D ++DI+ QE K+++++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNNTRSFKSMFDILESDIVVMQELKIQKKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ +FS K + GYSGV + R P+ AEEG G+L++ L
Sbjct: 61 DCYFSLP----KYKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLQSPSGTPYRDL 109
Query: 116 ED----------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+ F EL +D+EGRCVI + F+LF VY P S ++ F+
Sbjct: 110 PESESIGGYPSAFQVAELGVDPAALDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFR 167
Query: 162 LQFFHVL---------QGRRIFVVGDLNIAPAAID----------RCDAGPDFAKNEFRI 202
FF L QG+R+ +VGDLN+ ID R D R
Sbjct: 168 SGFFLALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRR 227
Query: 203 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F +L + G +D R HP RR YT W + A N G+RID +
Sbjct: 228 IFNQLLTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFV 287
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
L A + + V + +I L GSDH PVY
Sbjct: 288 LVA-------------DVMQSWVKDANI-------------------QEGLLGSDHCPVY 315
Query: 312 -------------MCLGEVPEIPQ-------------HSTPSLASRYLPII---RGVQQT 342
+ L E+ P STP+ +++ +P R ++
Sbjct: 316 ADFHDVVDDHGRNVSLLEIMNPPGVFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSM 375
Query: 343 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSS 402
+ +K+ + Q + SG PA + + + D S + D++ + D
Sbjct: 376 FAAPPVKKFASSQLERTP-SGIDPA-AQANAPSADISPHEDKAAASQSDE---------- 423
Query: 403 SNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS 462
A T + S P + + GQ SLK
Sbjct: 424 ----------------------ARPPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKG 461
Query: 463 FF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 521
FF K S V D + + ++ + + +L + P + S + P S S
Sbjct: 462 FFSSKASPVKPDLQSQESSQKTSITSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTA 520
Query: 522 HGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVK 581
V + + S ++ ++ W + + PLC+GH+EPC K
Sbjct: 521 DQVATQIASAERSQR----------------SWGAL--FTKPPAPLCEGHEEPCKTLQTK 562
Query: 582 KPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
K G GR F++CAR GP+ E CG F WA
Sbjct: 563 KKGSNQGRSFWMCARPLGPSGEKEKGTEWRCGTFIWA 599
>gi|350297224|gb|EGZ78201.1| DNase I-like protein [Neurospora tetrasperma FGSC 2509]
Length = 654
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 160/685 (23%), Positives = 272/685 (39%), Gaps = 153/685 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ +ADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLEADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R + P+ AEEG TG+L S D D+ +
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
++DSEGRCVI + F+L VY P + D RI+F+ F + G+ +F
Sbjct: 133 AQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVF 190
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 213
+ GDLNI +D K + F + +V G
Sbjct: 191 LCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVVGGRVIGEPDEGREKP 250
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+D+ R HP+R YTCW + A N+G+RID++LC+ FV +
Sbjct: 251 VLWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDAN 302
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP------- 318
+ E L GSDH PVY + + +P
Sbjct: 303 IQEG------------------------LLGSDHCPVYATISDSVSRDGVIIPITDIMNP 338
Query: 319 -----------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 367
E Q ++R +P +Q++ + +K+ K + P
Sbjct: 339 EGMFKNGQRQREWSQKDCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPK 388
Query: 368 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 427
+ D++D S++ + S + +LQG S+S+ + E +
Sbjct: 389 SATPAADSQDISDSPNTSSITVNATTVLQGTASSASSPRQWLSQSAATEPALSQTSPVPK 448
Query: 428 STITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 480
Q + P A K S+ G Q +L FF ++ V+ D+ + +
Sbjct: 449 RQAEQPAPYTRPPKKTKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPIN 508
Query: 481 TSLNVNNSVTDTSL------SQEEVPESHHHSNKIPVTDYSCSVHELHGVN-SSVCSHDQ 533
+ + + +T+L ++E P+ ++ I D + H+ + + +
Sbjct: 509 GNNHSPATTAETALRNEPSTAKESQPKQSFEADNIEEWDENTVEHKTNPTTYRETSTAME 568
Query: 534 DEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFV 593
DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++
Sbjct: 569 DEGKGKTIFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYM 622
Query: 594 CARAEGPASNPEAN----CGYFKWA 614
CAR GP+ N E C F W+
Sbjct: 623 CARPLGPSGNKETGTEFRCKTFIWS 647
>gi|340372931|ref|XP_003384997.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Amphimedon queenslandica]
Length = 438
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 149/281 (53%), Gaps = 43/281 (15%)
Query: 1 MKIVTYNVNGLRQRV-SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M+++T+NVNGL+ V ++ +L+ LDS ADIIC QE K + +++ ++ +A+GY S+F
Sbjct: 1 MRVLTWNVNGLKAVVKNRQTNLKDFLDSLSADIICLQEVKTTKDQIEENIAIAEGYTSYF 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----LLETSGSKIMEG 114
S +T R GYSGVATFCR PVA EEG TG L ++ G ++
Sbjct: 61 SFCKT----RQGYSGVATFCRT--------TVTPVAVEEGITGSCHVGLKDSIGFPVL-- 106
Query: 115 LEDFSKDELLKIDSEGRCVITDHGH-----FILFNVYGPRADSEDTVRIQFKLQFFHVLQ 169
D + +E ++++EGR ++T+H ++ NVY PR D ++ R+ +K+ F VL
Sbjct: 107 --DLNDEETEQLNNEGRGLLTEHLQENGRGLVIINVYCPRVDPDNPDRLPYKIHFLSVLH 164
Query: 170 ---------GRRIFVVGDLNIAPAAIDRC--DAGPDFAK----NEFRIWFRSMLVE-SGG 213
G+ + + GD N ID + P F K E + F S +
Sbjct: 165 ERTKRLQAGGKDVLICGDFNCVLDIIDSAAMEDMPTFTKEPKTKELLLSFISKTPPITNE 224
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
D +R HP R +YTCW + TG+ Q NYG RID+IL +
Sbjct: 225 VLLDTYRYLHPTERGSYTCWCTATGSRQLNYGQRIDYILAS 265
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 553 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 612
+W+++ + PLC GHKEP V RVVKKPGP R+F+VC R +G +P A+C +FK
Sbjct: 377 DWQKVFK-APPKAPLCSGHKEPAVLRVVKKPGPNHNRKFYVCGRPDGSKHDPNASCNFFK 435
Query: 613 W 613
W
Sbjct: 436 W 436
>gi|326481851|gb|EGE05861.1| DNA lyase [Trichophyton equinum CBS 127.97]
Length = 592
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 175/669 (26%), Positives = 275/669 (41%), Gaps = 180/669 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS K + GYSGV + R
Sbjct: 20 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLP----KQKKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 73 ---SSKCAA-IRAEEGVTGALCPPSSKTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 128
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ G+R+ + GD
Sbjct: 129 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 186
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 215
LN AID A K E+ RI+ R LV GS
Sbjct: 187 LNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRPVGSTGDTHDTETPPVL 244
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 245 RDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 296
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 335
E L GSDH PVY + + ++P
Sbjct: 297 EG------------------------LIGSDHCPVYASISD--KVP-------------- 316
Query: 336 IRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESNSTGDTEDCSENVDRSL 386
+ G ++ ++ + + + G SG L E + + +D N S
Sbjct: 317 LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFDRRRNIKDMFRNHSLSR 376
Query: 387 NN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRDSANVASHSTITQGS-S 435
NN + I G ++E K TI N SHS Q S S
Sbjct: 377 NNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN----PPKRSHSKGAQASPS 432
Query: 436 NHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSL 494
+ P + R +S GQ +L FF +R++ + + N+ T +S
Sbjct: 433 KRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA------------TASSD 475
Query: 495 SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA---- 550
S +E P + P ++ S ++ V + V + N+V
Sbjct: 476 SPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD-------------NSVVPSCS 519
Query: 551 -LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 607
W ++ + +P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 520 PTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTP 577
Query: 608 --CGYFKWA 614
C F W+
Sbjct: 578 WRCPTFIWS 586
>gi|322696797|gb|EFY88584.1| DNA lyase [Metarhizium acridum CQMa 102]
Length = 634
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 166/714 (23%), Positives = 275/714 (38%), Gaps = 193/714 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R Q + + + + D ++DI+ QETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFGYQPWREQRTFQAMFDILESDIVVMQETKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R S P+ AEEG TG+L K
Sbjct: 63 DVFFSLP----KHKKGYSGVAIYTRNAS-------CAPIRAEEGITGVL--CPPKSTTKF 109
Query: 116 EDFSKDELLK----------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRCVI + F+L VY P + D R++
Sbjct: 110 RDLPSDQQIGGYPRPGQLSGIVEDTVLDSEGRCVILEFPAFVLLGVYCPA--NRDESRVE 167
Query: 160 FKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W----- 203
F+ FF L +G+ + + GDLN+ + +D + + K I W
Sbjct: 168 FRTSFFEALAARIRNLVAEGKEVILAGDLNVIRSEMDSTNVMENLRKENMTIDEWISLPT 227
Query: 204 ---FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
F ++ E +D+ R HP R TCW + N G+RID
Sbjct: 228 RRIFNQLIFEGSIVGDRDEGRETPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRID 287
Query: 250 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 309
+ILC+ F + ++ E L GSDH P
Sbjct: 288 YILCSNGIKDW--------FTSANIQEG------------------------LMGSDHCP 315
Query: 310 VYMCLG--------------------------EVPEIPQHSTPSLASRYLPIIRGVQQTL 343
V+ + V ++ Q L+++ +P +Q++
Sbjct: 316 VFATIAGTVASNGRQVSINDVMNPAGMFENGTRVRDLAQKDILPLSAKLIPEF-DRRQSI 374
Query: 344 VSVLMKREVAKQGKSCKF---SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYC 400
+ K+ + + ++ S S AE S D S +D +L +
Sbjct: 375 RDMFFKKVTSAERRTTPHNSESSSFKAEDTSQASDNDASSQIDNALQTVNTN-------- 426
Query: 401 SSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKA------KKSQ 454
+ +N+ + +++ + D + P + R++ A +K
Sbjct: 427 TPTNKPAALPYSQPRKRSPDPIDPV--------------PRQLKRSKSAADPIGSKQKIS 472
Query: 455 LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDY 514
GQ +LK FF S+V L + D PE+ ++ +P T
Sbjct: 473 AGQTTLKGFFKPVSSV------------LPSPAVLAD--------PEAQSNATDLPATKT 512
Query: 515 SCSV---------HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETS 564
S S +E S +HD + D+ + + E W ++ L +
Sbjct: 513 SPSTKGSSENLTSNEFMPPFSEQPAHDSLVDTSPKSPDRVFDPIQAKESWSKL--LGKRV 570
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
+P C+ H EPC++ V KKPG GR F++C R GP+ E CG F W+
Sbjct: 571 VPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKERGSEWRCGTFIWS 623
>gi|146399949|gb|ABQ28691.1| apn1 [Neosartorya fischeri]
Length = 581
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 164/643 (25%), Positives = 259/643 (40%), Gaps = 122/643 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS +T K G +GV C S
Sbjct: 1 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPKT--KKEEGLAGV--LCPPNS 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S + LP + G G +E L + D +DSEGRCVI + F+L
Sbjct: 57 SVSFRD--LPEEQQVG--------GYPTIEQLSELEVDAA-TLDSEGRCVILEFPAFVLL 105
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPD 194
+Y P + D R F+ F ++ G+R+FV GDLNIA ID A
Sbjct: 106 GIYSPA--NRDESRDNFRHSFIDLMDARIRNLVAMGKRVFVTGDLNIAKGEIDAAHATEA 163
Query: 195 FAK-----NEF-----RIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCW 233
K +EF R F +L + FD+ RS HP RR YTCW
Sbjct: 164 IRKGTVTEDEFISVPARRVFNQLLSDGRVIGQRDEGREIPVLFDICRSFHPGRRGMYTCW 223
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 293
A NYG+RID++LC+ D+Q F ++ E
Sbjct: 224 EQRIIARPGNYGSRIDYVLCS-------LDMQDW-FSDSNIQEG---------------- 259
Query: 294 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII----RGVQQTLVSVLMK 349
L GSDH PVY +V + + L P + + Q+ L+
Sbjct: 260 --------LMGSDHCPVYAVFKDVVRLGEKEVSILDIMNPPGMFKDGQRQQEYSTKYLLP 311
Query: 350 ---REVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE 406
R + + K +S++ T + R + + V S+++Q
Sbjct: 312 TSGRLIPEFDKRRSIKDMFSRKSSTNAQTPTTNPPALRRFASTQGTETPTAVSESTTSQS 371
Query: 407 -SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR----KKAKKSQLGQLSLK 461
+ + T+TI+ R + S P V R++ + + S GQ +LK
Sbjct: 372 VAVSDSTQTIQIVRKRSQ----------KSETGFPVSVKRSKSGSAQPSAPSSAGQRTLK 421
Query: 462 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 521
FF +++ + +I S +V+ T+ S + P + + + L
Sbjct: 422 GFFKPKTDPAG--QATIARDSASVSTVPTNQSAAFPRKPTPVTEPTALEAIPTAPAGEAL 479
Query: 522 HG------VNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 575
G ++ S D+ KE +W ++ + +P C+GH+EPC
Sbjct: 480 PGEQPNSATTTTPASSQNDDTVHDPIASKE-------DWSKL--FTKRPVPRCEGHQEPC 530
Query: 576 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 531 ISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 573
>gi|406868502|gb|EKD21539.1| DNA lyase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 633
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 180/706 (25%), Positives = 288/706 (40%), Gaps = 172/706 (24%)
Query: 1 MKIVTYN--VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
++I T+N VNG+R + + ADI+ QETK+++++L+ D+V+ G++ F
Sbjct: 10 LRITTWNEEVNGIRS---------AMFEILQADIVVMQETKIQKKDLRDDMVLVPGWDVF 60
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
FS K + GY+GVA + R S P+ AEEG TG+L S+ D
Sbjct: 61 FSLP----KHKKGYAGVAVYTRNSS-------CAPIRAEEGITGVLTPPNSQT--SFFDL 107
Query: 119 SKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+D+ + +DSEGRCVI + F+L Y P + D R +F+
Sbjct: 108 PEDQQIGGYPTPSQLSYCSLDAATLDSEGRCVILEFPAFVLIGTYCPA--NRDESRDEFR 165
Query: 162 LQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----------RI 202
+ F + ++ G+R+F GDLNI ID +AG K R
Sbjct: 166 IGFLNAVEARVRNLVAAGKRVFWTGDLNIIREEIDTANAGEQLRKQGITVEEYLSTPARR 225
Query: 203 WFRSMLVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
+LV+ G F +D+ RS HP R +TCW A N+G+RID+
Sbjct: 226 MLNQLLVD-GKVFGERDEGREKPIMWDICRSFHPNRLGMFTCWEQKINARPGNFGSRIDY 284
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
+LC+ D+K W + + L GSDH PV
Sbjct: 285 VLCSQ--------------------------DWKDW------FCESNIQEGLMGSDHCPV 312
Query: 311 YMCLGEVPEIPQ---HSTPSLASRYLPIIRGVQQ-------------TLVSVLMKREVAK 354
Y L E EI H ++S G++Q L+ R +
Sbjct: 313 YAVLKEKVEIEGKEVHVRDIMSSGMFK--DGLRQREWSAKDLLPMSARLIPEFNHRRSIR 370
Query: 355 QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL--QGVYCSSSNQESEGEFT 412
+ K SL A NS T+ + V +L D G+L +G S S +++ E T
Sbjct: 371 DMFTKK--SSLTASDNSLS-TQGAQDEVGTALP---DRGLLTSKGAMASVSTLQAKPEVT 424
Query: 413 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAK--------------KSQLGQL 458
+ + + V+ ++I + P R + + +S GQ
Sbjct: 425 EDLTA--VTTTVSQTTSIQSSAKPPKRPIESPTTRPQKRGKPSTSSKSTTSKAQSGKGQS 482
Query: 459 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSV 518
SL FF K N+SI D S T T +S + +PES + P + +
Sbjct: 483 SLMGFF-KSKQPQDSQNSSIIDA-----KSDTATMISIDTLPESSDLAP--PAKEEPPAT 534
Query: 519 HELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPLCKGHKEPCVA 577
++ ++ + D+K + +A+ + W ++ L + +P C+ H +PC++
Sbjct: 535 QSSENLSPNLAFNPADQK-------SVHDPIAVKDSWSKL--LGKRVVPRCE-HDDPCIS 584
Query: 578 RVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSK 619
+ KK G GR F++C R GP+ E N CG F W+ +K
Sbjct: 585 HITKKGGENCGRSFYMCPRPLGPSGKKEKNTEWRCGTFIWSSDWTK 630
>gi|326471548|gb|EGD95557.1| DNA lyase [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 174/669 (26%), Positives = 274/669 (40%), Gaps = 180/669 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS K + GYSGV + R
Sbjct: 20 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLP----KQKKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
S++ A + AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 73 ---SSKCAA-IRAEEGVTGALCPPSSKTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 128
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ G+R+ + GD
Sbjct: 129 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 186
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 215
LN AID A K E+ RI+ R LV GS
Sbjct: 187 LNTCAGAIDSAPALERIRKGTETEEEYLSYPSRRIFNR--LVRPVGSTGDTHDTETPPVL 244
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 245 RDLCREFHPGRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 296
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 335
E L GSDH PVY + + ++P
Sbjct: 297 EG------------------------LIGSDHCPVYASISD--KVP-------------- 316
Query: 336 IRGVQQTLVSVLMKREVAKQG---------KSCKFSGSLPAESNSTGDTEDCSENVDRSL 386
+ G ++ ++ + + + G SG L E + + +D N S
Sbjct: 317 LDGKDVHILDIMNPKGIFEDGVEQPRSNKITPLALSGKLIPEFDRRRNIKDMFRNHSLSR 376
Query: 387 NN-----YCDSGILQGVYCSSSNQESEGEFTK-----TIENCRDSANVASHSTITQG-SS 435
NN + I G ++E K TI N SHS Q S
Sbjct: 377 NNSEVKVSTTTDIQAGSEIPGPTSQTESTLEKKGAPVTINN----PPKRSHSKGAQAPPS 432
Query: 436 NHISPFHVDRARKKAKKSQLGQLSLKSFFH-KRSNVSHDDNNSITDTSLNVNNSVTDTSL 494
+ P + R +S GQ +L FF +R++ + + N+ T +S
Sbjct: 433 KRLKP----KGRPTGTRSN-GQQTLAGFFKSERTSRAVSEENA------------TASSD 475
Query: 495 SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA---- 550
S +E P + P ++ S ++ V + V + N+V
Sbjct: 476 SPQETP---AEAKIAPASELSSMAEKIDSVPTGVIASPD-------------NSVVPSCS 519
Query: 551 -LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 607
W ++ + +P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 520 PTESWSKV--FTKKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTP 577
Query: 608 --CGYFKWA 614
C F W+
Sbjct: 578 WRCPTFIWS 586
>gi|392578943|gb|EIW72070.1| hypothetical protein TREMEDRAFT_41480 [Tremella mesenterica DSM
1558]
Length = 668
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 121/386 (31%), Positives = 173/386 (44%), Gaps = 88/386 (22%)
Query: 1 MKIVTYNVNGLRQRVS--QFGSLRK-----LLDSFDADIICFQETKLRRQELKSDLVMAD 53
M+I+T+NVN LR + F SL+K LLD A I+CFQE K RR +L +
Sbjct: 1 MRILTWNVNVLRTCLDYHPFSSLKKRNIEGLLDELGAQIVCFQEHKTRRPQLDKTMACPG 60
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
Y++F++ R+ +TGYSGV T+ + + +P+ AEEG TGLL S M
Sbjct: 61 PYDAFWTFPRS----KTGYSGVCTYV-------DSRICVPLKAEEGITGLLLGDSSSTMR 109
Query: 114 -------------GLEDFSKDELL--------KIDSEGRCVITDHGHFILFNVYGPRADS 152
+E+ S + L ++D EGR V+ D G F+LFN+Y P +
Sbjct: 110 PPWSAEERIGCYPDMEELSFENELDGSVFDPKRLDMEGRAVVCDFGLFVLFNLYCPNETN 169
Query: 153 EDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRI 202
+ R +K+ FFH LQ GR + + GD+NI A ID + G A+ ++
Sbjct: 170 DS--RRPYKMNFFHALQARVRALQAAGREVIIAGDINIMRAPIDSGEGGIRTSAEQHYQH 227
Query: 203 WFRSMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259
R +L + G DV R P+R + +TCW A NYG+RID ILC
Sbjct: 228 PARVILNDWCAPKGPMIDVVRESWPDRDDMFTCWNQKLDARPSNYGSRIDLILCT----- 282
Query: 260 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVP 318
PG P KGG + ++ GSDH PVY+ L E
Sbjct: 283 ----------------------------PGLRPWIKGGDIVPKVYGSDHCPVYIDLHESI 314
Query: 319 EIPQHSTPSLASRYLPIIRGVQQTLV 344
+P +L P+ R T +
Sbjct: 315 SLPSGQILTLHDALNPLDRPPTTTTI 340
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCA----------RAEGPAS--NPEANCGYFKW 613
PLC H++PC +VK PGP G+RF++C+ R++ P N + C YF W
Sbjct: 595 PLCTVHQQPCKDFIVKIPGPNKGKRFWLCSLPVGAGYDTGRSKRPREDVNRDFRCDYFLW 654
Query: 614 AFSKSKQK 621
S ++QK
Sbjct: 655 D-SANRQK 661
>gi|71004198|ref|XP_756765.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
gi|46095654|gb|EAK80887.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
Length = 663
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 103/319 (32%), Positives = 152/319 (47%), Gaps = 55/319 (17%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + LD ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLDHLGADIACFQETKMTRKQLTEPMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-------- 107
+FF+ T GYSG T+ R V++P+ AE+G TG L +
Sbjct: 61 NAFFNFHPTK-----GYSGTVTYVR-------KSVSIPLKAEQGITGRLSVTNVSTNPLI 108
Query: 108 -----GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PNDPIGCIPADTRDDVDAQIWNALDEEGRCVLLDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA--------GPDFAKNEFRIWFR 205
++ L +GR++ +VGD+NI ID CDA DF ++ R WF+
Sbjct: 167 TYYQCLAERAHRLIQEGRQVMIVGDMNIIRDPIDHCDAEQSIKEHGWDDFHQHPARSWFQ 226
Query: 206 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 263
S L G F DV R H +R++ +TCW + A NYG R+D+ L L + D
Sbjct: 227 SFLAPHG-KFHDVGRMYHADRKKMFTCWNTLIDARPANYGVRLDYTLATEGILPWIKGAD 285
Query: 264 LQSHNFVTCHVNECDILID 282
+Q+ + + H C I ID
Sbjct: 286 IQADVYGSDH---CPIYID 301
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 63/167 (37%), Gaps = 23/167 (13%)
Query: 444 DRARKKAKKSQLGQLSLKSFFHKRS--------------NVSHDDNNSITDTSLNVNNSV 489
D + K + SQ GQ L SFF K +VS D TS + N+V
Sbjct: 504 DSIKAKTRASQRGQTKLHSFFAKPKSLAPVATNETSQPIDVSSSDGMVAPKTSTS-GNTV 562
Query: 490 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 549
+TS H N D C ++E +E+ +
Sbjct: 563 DNTSTDPTRDVTKRHGPNVDEAEDAICDLNEFQATTPPTQPLPPNEQSAADRVGTS---- 618
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
L W I M PLC+ H EPC A V KPGP GR+F++C R
Sbjct: 619 --LAWGAIFSPMPA--PLCRNHSEPCRAWTVNKPGPNHGRKFWLCNR 661
>gi|449302156|gb|EMC98165.1| hypothetical protein BAUCODRAFT_32166 [Baudoinia compniacensis UAMH
10762]
Length = 642
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 180/697 (25%), Positives = 276/697 (39%), Gaps = 156/697 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R Q +Q S + D +DI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYQPWNQARSFPAMFDILGSDIVVMQELKIQRKDLRDDMVLLDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R PV AEEG G+L + +G+ +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPVKAEEGLLGVLPSPNGTPYCQL 109
Query: 115 LEDFS----KDEL---------LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
ED S EL + +D+EGRCV+ + F+L VY P + + +R F+
Sbjct: 110 PEDQSIGGYPSELQVAELGVDPMVLDAEGRCVMVEFPAFVLLGVYSPA--NSNGLRDDFR 167
Query: 162 LQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RI 202
F L G+R+ +VGDLN++ D A D K E+ R
Sbjct: 168 YGFICALDCRIRNLSKAGKRVVLVGDLNVSRDERDTASALEDMRKAGITHEEYISTPNRR 227
Query: 203 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F +LV+ G +D R+ HP+R YT W A N+G+RID +
Sbjct: 228 IFNQLLVDGEVVGERDDGRESGLLWDTCRAFHPQRERMYTHWEQKINARPGNFGSRIDFV 287
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
L C + ++ N + L GSDH PVY
Sbjct: 288 LV---CEEMQTWVKDAN-----------------------------IQEGLVGSDHCPVY 315
Query: 312 -------MCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVA--KQGKSCKFS 362
MC GE ++ P+ R + + V V + + ++ +S K
Sbjct: 316 ADFHDDVMCAGETVKLADAMNPAGVFSRGFRAREWRLSDVPVFSAKRLPEFERRRSIKSM 375
Query: 363 GSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY-------CSSSNQESEGEFTKTI 415
S P SL + + QGV+ S +ESE T T+
Sbjct: 376 FSTP------------------SLIKQSSTQVAQGVFDAERSFIPSPPQRESEEPHT-TV 416
Query: 416 ENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL--------GQLSLKSFFHKR 467
++ A+ A + Q SS + K +K+ +L GQ SLK FF
Sbjct: 417 PLSQEIASTAPTAHDNQSSSGVKRKASMATKLKSSKRQKLDGAAPSLKGQQSLKGFFQ-- 474
Query: 468 SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP--ESHHHSNKIPVTDYSCSVHELHGVN 525
S + D + T +S + + E P + N Y + H L ++
Sbjct: 475 SGRAEVDTTASTQSSTAIEPDAAGVLTTPETSPIKSTDGGINASATPAYDPTTH-LPDLD 533
Query: 526 SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI-----PLCKGHKEPCVARVV 580
S++ Q R + L R Q+ T P+C+GH EPC + +
Sbjct: 534 SNLPPSSQSSTT-----SPSRVSAKLAAVERTQRSWSTLFSRPVAPMCEGHDEPCKSMLT 588
Query: 581 KKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
KK G GR F++CAR GP+ N E C F W
Sbjct: 589 KKKGSNQGRSFWMCARPLGPSGNKEKGTQWRCPTFIW 625
>gi|452825432|gb|EME32429.1| AP endonuclease 2 [Galdieria sulphuraria]
Length = 510
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 145/497 (29%), Positives = 211/497 (42%), Gaps = 105/497 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ T+NVNGL + G + DI+C QETK+ R++L + + F S
Sbjct: 1 MRLCTWNVNGLESLFRK-GYFADFVYRTSPDILCLQETKISRRKLAQWSISTRDWNCFLS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---------------- 104
+T++ GYSGV+TFC+ P + AEEG +G L
Sbjct: 60 ICKTNE----GYSGVSTFCQSHCPL--------LKAEEGISGFLPAECLAWNPSRSWFCN 107
Query: 105 --------ETSGSKIMEGLEDFSKDELL-KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
ET+ S + E ELL K+D EGRCVI + FILFNVY P S++T
Sbjct: 108 QREIPIWRETAYS-VGYHFETTENSELLTKLDKEGRCVIVEFPFFILFNVYVPFDSSDET 166
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA---------GPDFAK 197
++K F L G+ + V GD N A ID CD G F
Sbjct: 167 --FEYKYIFIERLLKRIKMVLEGGKNVVVCGDFNCARERIDHCDPEGIFQNKPRGSLFES 224
Query: 198 NEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
+ R F +++ S G DVFR HPER +AYTCW + TGA + N+GTRID+I
Sbjct: 225 DSCRQLF-NVICSSEGPLVDVFRYFHPERLDAYTCWNNQTGARKTNFGTRIDYI------ 277
Query: 258 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
L + FV + CDI D + GSDH PVY+ +
Sbjct: 278 ------LANRAFVENFITNCDIFND-------------------IYGSDHCPVYIEFRSI 312
Query: 318 PEIPQHS-----TPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNST 372
+ S P ++ P + G QQ+L ++ +++ KS K P +T
Sbjct: 313 VSLSAESLHVERLPPFCCQHFPDLLGSQQSLKDMM---KISIHDKSNKIVEMRPHFVEAT 369
Query: 373 GDTEDC-SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTIT 431
C + D S + S +G Y + ++ F K+ D+ + +S+
Sbjct: 370 AFNRTCITMKSDTSTSEEGHSQ--EGKYDDTIRLPTKRNFEKSTSIEMDTFSNREYSSTV 427
Query: 432 QGSSNHISPFHVDRARK 448
GS N FHV + +K
Sbjct: 428 SGSEN---CFHVTKYQK 441
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 553 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 612
+WR++ ++ +PLC GH EPC+ R VKK G GR+F+VC R G E C +F
Sbjct: 445 DWRKLFHNLQ-KVPLCSGHNEPCLLRTVKKKGANLGRKFYVCGRPIGKGV--EGRCNFFL 501
Query: 613 W 613
W
Sbjct: 502 W 502
>gi|345326277|ref|XP_001510545.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ornithorhynchus anatinus]
Length = 671
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 132/447 (29%), Positives = 189/447 (42%), Gaps = 85/447 (19%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L + +GY S+FS +R GR+GYSGVATFC+ + A PVAAEEG +GLL
Sbjct: 187 LDEPTAIVEGYNSYFSFSR----GRSGYSGVATFCK--------DSATPVAAEEGLSGLL 234
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSE 153
+ I E F++DEL +DSEGR VIT H + NVY P AD E
Sbjct: 235 ADNRGAIGCYGDTEGFTEDELRALDSEGRAVITQHRIRTSDKREKTLTVINVYCPHADPE 294
Query: 154 DTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCD-AGPD-FAKNEFRI 202
R FKL+F+H+L+ G + ++GD+N + ID CD + P+ F +N R
Sbjct: 295 KPERKTFKLRFYHLLKLRAEAILRAGSHVIILGDVNTSHRPIDHCDPSDPEHFDENPGRR 354
Query: 203 WFRSMLVESG-----------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
W L E G G+F D FR HP + A+TCW GA NYG
Sbjct: 355 WLNEFLWEPGKAPGKGEVADPPPGGGGGAFVDSFRYFHPTQTNAFTCWSVPQGARHTNYG 414
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
TRID+IL VT + +L + +EGS
Sbjct: 415 TRIDYILG------------DRILVTEEFEDSVLLPE-------------------VEGS 443
Query: 306 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSL 365
DH PV L + P ++YLP G QQ L L++ + ++G S
Sbjct: 444 DHCPVRAVLKST-LMAAPKCPPFCTKYLPEFAGKQQKLSQFLVR--LDRRGGSRSSPPDS 500
Query: 366 PAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
P + + D + R+ G+ + +S + F K +N AN
Sbjct: 501 PESAEAVEDVAPPNRQEKRNSAEKTKVGVKKNRTSASRGGGTLLRFFKPGDNREGKANPP 560
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKK 452
+ + + V +A ++AK+
Sbjct: 561 EKMGPDRAVQDQQAVIGVPQAAEQAKR 587
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 568 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 617
CK H EPCV R VKK GP GR+F+VCAR G A+NP A C +F W K
Sbjct: 617 CKVHGEPCVMRTVKKAGPNHGRQFYVCARPVGHATNPAARCDFFLWVPKK 666
>gi|302664446|ref|XP_003023853.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
gi|291187871|gb|EFE43235.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
Length = 588
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 173/661 (26%), Positives = 274/661 (41%), Gaps = 149/661 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSML----------VESGGSFFD 217
LN ID A K E+ RI+ R + ES D
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNRLVRPVGSTGDTHDTESPPVLRD 221
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++ E
Sbjct: 222 LCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQEG 273
Query: 278 DIL-IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII 336
I+ + + +P + + +GSDH PVY +G+ +P
Sbjct: 274 LIVCVKFGLI----SPSFNNLLIPNEQGSDHCPVYASIGD--RVP--------------F 313
Query: 337 RGVQQTLVSVLMKR----EVAKQGKSCK-----FSGSLPAESNSTGDTEDCSENVDRSLN 387
G ++ ++ + + +Q +S K SG L E + + +D N S N
Sbjct: 314 DGKDVHILDIMNPKGTFDDGVEQPRSNKITPLALSGRLIPEFDRRRNIKDMFRNHSLSRN 373
Query: 388 N-----YCDSGILQGVYC-SSSNQESEGEFTKTIENCRDSANVASHSTITQG-SSNHISP 440
N + L G ++Q + KT + A SHST Q S + P
Sbjct: 374 NSEVKMSTTTDTLAGSEIPGPASQTKSAQENKTARVTMNHAPKRSHSTGVQAPPSKRLKP 433
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSN---VSHDDNNSITDTSLNVNNSVTDTSLSQE 497
+ R +S GQ +L FF VS ++ + +D+ V T S
Sbjct: 434 ----KGRPSGARSN-GQQTLVGFFKSERTSRAVSEENATASSDSPQEAPAEVKITPAS-- 486
Query: 498 EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 557
E+ + +++ +P T + S NS V S E K F K
Sbjct: 487 ELASTAQNNDSVP-TAVTTSPD-----NSVVPSCSPTESWSKVFTRK------------- 527
Query: 558 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
+P C+GH E C++ V KKPG GR F++C R GP+ + E+ C F W
Sbjct: 528 ------PVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCPTFIW 581
Query: 614 A 614
+
Sbjct: 582 S 582
>gi|303313137|ref|XP_003066580.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
gi|240106242|gb|EER24435.1| DNA lyase Apn2, putative [Coccidioides posadasii C735 delta SOWgp]
Length = 588
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 175/650 (26%), Positives = 263/650 (40%), Gaps = 146/650 (22%)
Query: 31 DIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEV 90
DII QE K++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 10 DIIVLQELKIQRKDLRDDMVLVPGWDCFFSLP----KYKKGYSGVAIYTR-------NAT 58
Query: 91 ALPVAAEEGFTGLL----ETSGSKIM---EGLEDFSKDELLK--------IDSEGRCVIT 135
P+ AEEG TG+L TS + + + + + DE L +DSEGRCVI
Sbjct: 59 CSPIYAEEGVTGILCPPNSTSSYRELPESQQIGGYPTDEQLSTSEVSAETLDSEGRCVIL 118
Query: 136 DHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAI 186
+ F+L VY P + D R F+L F + L G+R+ V GDLNI+ AI
Sbjct: 119 EFPAFVLLGVYCPA--NRDETRDGFRLGFLNALDHRIRNLIFLGKRVVVAGDLNISRDAI 176
Query: 187 DRCDA----------GPDFAKNEFRIWFRSMLVESG------------GSFFDVFRSKHP 224
D A +F + RI F + LVE G +D+ RS P
Sbjct: 177 DSAHALEQIRKSRLTTDEFLSSPARIIF-NRLVEGGRVSHIEGVDKKDAVLWDMCRSFFP 235
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
R YTCW A N+G RID+ILC+ L ++++ + +++
Sbjct: 236 ARSGMYTCWEQRINARPGNFGARIDYILCS---------LDMKDWMSIADIQEGLMV--- 283
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 344
GN ++ + +GSDH PVY E + + G Q V
Sbjct: 284 ----GNNFQYALYQADSSQGSDHCPVYAIFKENVD----------------LHGDQIDFV 323
Query: 345 SVL---MKREVAKQGKS---CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGV 398
+++ + E A+ S SG L E N + D +
Sbjct: 324 NLMNPSVDFEAAENSLSRSHLPLSGRLIPEFNRRRNIRD------------------MFL 365
Query: 399 YCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL--- 455
SS+ S GE + + N ++ S+ I R +K+ L
Sbjct: 366 RQSSTQNLSPGEINQNATSMSSMTNKGRPISLDLERSHEIDERDPKRRKKEPIAGVLPTT 425
Query: 456 GQLSLKSFFH------KRSNVSHDDNNSITDTSLN--VNNSVTDTSLSQEEVPESHHHSN 507
Q S++ FF+ K+SN++ D +I D+ N N+S S P+++
Sbjct: 426 SQKSIRGFFNPRQPRLKQSNLAK-DCEAINDSVPNERKNDSGPGHRTSGISPPDANPDFE 484
Query: 508 KIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPL 567
P T + + V S + + D D+E W +I + P
Sbjct: 485 ADPQTSQESTT--VSAVPSRIVA---DINVMSSIPDQE-------SWNKI--FKKRPPPR 530
Query: 568 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
C+GH+EPCV V KKPG GR F++C R GP+ N E C F W
Sbjct: 531 CEGHEEPCVRLVTKKPGINRGRSFWICPRPLGPSGNKETGTQWRCPTFIW 580
>gi|255089412|ref|XP_002506628.1| predicted protein [Micromonas sp. RCC299]
gi|226521900|gb|ACO67886.1| predicted protein [Micromonas sp. RCC299]
Length = 583
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 169/379 (44%), Gaps = 108/379 (28%)
Query: 3 IVTYNVN--GLRQRVSQ--------------------FGSLRKLLDSF--DADIICFQET 38
IV++N+ GLRQ V+ +G + LLDS D D++ QE
Sbjct: 27 IVSWNIGLRGLRQLVASDRGADKTAAKDQHGVSRQLGYGCIDSLLDSLGSDVDVVALQEC 86
Query: 39 KL-RRQELKSDLVMADGYESFFS--------CTRTSDKGR--TGYSGVATFCRVKSPFSS 87
KL R +L ++ G++S+ + T+ +GR TGY+GVAT+ R+
Sbjct: 87 KLTSRSDLSPEIACPSGWDSYHAVCGDASGGAIPTTSRGRSKTGYAGVATYVRIGKRV-- 144
Query: 88 TEVALPVAAEEGFTGLLETSGSKIMEG---------LEDFSKDELLKIDSEGRCVITDHG 138
VAAEEG TG L T +I G E F + +L++DSEGRCV+ D G
Sbjct: 145 ------VAAEEGVTGAL-TPPERIARGDAVGHYGRMSEAFDRARMLELDSEGRCVLVDLG 197
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRC 189
F+LFNVY P S+D R +FKL F ++ GRR+ + GD N++ ID
Sbjct: 198 AFVLFNVYVPSLSSDDEDRERFKLDFLVAVEIRYRALLDAGRRVVLCGDWNVSYGVIDSA 257
Query: 190 DAGPD-------FAKNEFRIWFRSMLVESGGS-------FFDVFRSKHPERREAYTCWPS 235
A + +N+ R W R + G+ DVFR +P R AYTCW
Sbjct: 258 VAIEERLMDEALCERNQSRQWLRRQVSGGEGAKGAERDPLVDVFRRDYPAARGAYTCWNV 317
Query: 236 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 295
+ GA+ NYG+RID+ LC V C
Sbjct: 318 SAGAQLTNYGSRIDYFLC-------------DEVTAASVARC------------------ 346
Query: 296 GGMSTRLEGSDHAPVYMCL 314
G++ + EGSDHAPV++ +
Sbjct: 347 -GIAPKHEGSDHAPVFIIV 364
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 551 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 610
+ W+ IQ+ M + P C+GH PC R VK+ G GR FF C + +G + A+CG+
Sbjct: 518 VAAWKAIQKRM--APPKCRGHGLPCKVRTVKE-GANKGRGFFCCPKPKGMKGDKNADCGF 574
Query: 611 FKW 613
F+W
Sbjct: 575 FQW 577
>gi|440633305|gb|ELR03224.1| hypothetical protein GMDG_01207 [Geomyces destructans 20631-21]
Length = 657
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 174/717 (24%), Positives = 277/717 (38%), Gaps = 173/717 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + + + + D +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFGYQPWREKKTFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+++FS K + GYSGVA + R + V P+ AEEG TG+L GS +
Sbjct: 63 DAYFSLP----KHKKGYSGVAIYTR-------SSVCSPIRAEEGITGILCPPGSS--QSF 109
Query: 116 EDFSKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
D DE + +DSEGRC+I + F+L Y P + D R
Sbjct: 110 FDLPDDERIGGYPTISQYGDCTLDAATLDSEGRCLILEFPAFVLIGTYCPA--NRDETRD 167
Query: 159 QFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDF------AKNEFRIW 203
F+L F +VL G+R+ + GDLN+ ID +A A+ F
Sbjct: 168 HFRLGFLNVLDARIRNLVNAGKRVILAGDLNVIREEIDTANAQERMRKEGVTAEEFFSAP 227
Query: 204 FRSM---LVESGGSF------------FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 248
R + LVE G + D+ R H RR +TCW A N+G+RI
Sbjct: 228 ARRLINHLVEHGNVYGERDECRARPVLTDICRKFHNRRRGMFTCWDQKKNARPGNFGSRI 287
Query: 249 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 308
D+I CA +D K W + + L GSDH
Sbjct: 288 DYI-CAS-------------------------LDCKDWFA------ESNIQEGLMGSDHC 315
Query: 309 PVYMCLGEVPEIPQHSTP--------------------------SLASRYLPII---RGV 339
PVY + + ++ T +++ LP R +
Sbjct: 316 PVYAVISDKVQLDGRETDIKDVMNAVGMFQDGFRQRDWTIKDLLPTSAKLLPEFDRRRNI 375
Query: 340 QQTLVSVLMKREVAKQGKS----CKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGIL 395
+ + + + QG+S K ES +TGD +E R L + +
Sbjct: 376 RDMFIKMPPATPLT-QGESLTSLAKVGSEPRPESPTTGDGCGVAE---RGLRDSFSTSPQ 431
Query: 396 QGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQL 455
GV S K + + ++ S Q P + +A + +
Sbjct: 432 PGVVKEKEGDTSSCGTGKVVNSTSSKGKRSAESLHLQRDQKRTKPANA-KALTSKNRQGM 490
Query: 456 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 515
Q +L+ FF ++ + N +N N + ++ S+H + P + +
Sbjct: 491 AQSTLQGFFTPKTQIPRGQPN------VNANTPPSSST-------GSNHSPSPYPRKELA 537
Query: 516 CSVHELHGVNSSVCSHDQDE-----KKGKRF-----LDKERNNVALL----EWRRIQQLM 561
+ + SH+ E K+ K +D E + + + W RI L
Sbjct: 538 LGPDQ--DTQEDLSSHNASEGYNAPKEAKYLSTPVDIDNEEDIIDPIITKESWSRI--LG 593
Query: 562 ETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
P C+ H +PC KKPG GR F++CAR GP+ E CG F W+
Sbjct: 594 TRIAPRCE-HNQPCRMLSTKKPGMNCGRSFYICARPLGPSGEKERGTQWRCGTFIWS 649
>gi|432091224|gb|ELK24429.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Myotis davidii]
Length = 607
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 143/269 (53%), Gaps = 48/269 (17%)
Query: 1 MKIVTYNVNGLRQRVSQ-------FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
+++V++N+NG+R + ++ ++LD DADI+C QETK+ R L L + +
Sbjct: 2 LRVVSWNINGIRSPLQAEEPNNCTTVAMARVLDRLDADILCLQETKVTRDALTEPLAITE 61
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-- 111
GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GLL +
Sbjct: 62 GYNSYFSFSRN----RSGYSGVATFCK--------DGATPVAAEEGLSGLLAPQNGDVGC 109
Query: 112 MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQFKL 162
+++FS++EL +D+EGR ++T H + NVY P AD R+ FK+
Sbjct: 110 YGNMDEFSQEELRALDNEGRALLTQHKIRTWDGKEKILTIINVYCPHADPGRPERLTFKM 169
Query: 163 QFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE- 210
+F+ +LQ G + ++GDLN A ID DA F ++ R W +L +
Sbjct: 170 RFYRLLQIRAEALLPAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKL 229
Query: 211 --SGGS----FFDVFRSKHPERREAYTCW 233
GGS F D +R HP++ A+TCW
Sbjct: 230 DCQGGSQVGAFIDAYRCFHPKQERAFTCW 258
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 41/188 (21%)
Query: 170 GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVE---SGGS----FFDVFR 220
G + ++GDLN A ID DA F ++ R W +L + GGS F D +R
Sbjct: 281 GSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRRWMDGLLSKLDCQGGSQVGAFIDAYR 340
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDIL 280
HP++ A+TCW + TGA + NYG+RID++ L VT + +L
Sbjct: 341 CFHPKQERAFTCWSTITGARRLNYGSRIDYV------------LGDRTLVTDTFQDSFLL 388
Query: 281 IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQ 340
+ + GSDH PV L V +P P L +R+LP G Q
Sbjct: 389 PE-------------------VMGSDHCPVGAVL-NVSSVPAKQCPPLCTRFLPEFSGTQ 428
Query: 341 QTLVSVLM 348
++ L+
Sbjct: 429 LKILHFLV 436
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+PLC GH EPCV R VKK GP G F+VC+R GP+++P + C +F W+
Sbjct: 555 MPLCGGHGEPCVMRTVKKAGPNQGHHFYVCSRPRGPSTDPSSRCNFFLWS 604
>gi|358384928|gb|EHK22525.1| DNA lyase, partial [Trichoderma virens Gv29-8]
Length = 630
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 174/687 (25%), Positives = 278/687 (40%), Gaps = 171/687 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS R + GYSGVA +
Sbjct: 15 TFQAMFDILEADIVVMQETKIQRKDLTDDMVLVPGWDVYFSLPRH----KKGYSGVAIYT 70
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G E L + DEL
Sbjct: 71 R-------NATCAPIRAEEGILGVLCPPKSSTQFRNLPKDQQIGGYPRPEQLPG-NIDEL 122
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
L +DSEGRCVI + F+L VY P + D R++F+++F L +G+++
Sbjct: 123 L-LDSEGRCVILEFPAFVLLGVYSP--ANRDESRVEFRMEFLQALDARVRNLVAEGKQVV 179
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS------------ 214
+VGDLN++ +A D + + K + W R + + GG+
Sbjct: 180 LVGDLNVSRSAADSTNVVENLRKEGLSMEEWMNLPSRRLFNHLVYGGTVQGDRDEGREQP 239
Query: 215 -FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+D+ R HP R TCW + N G+RID++LC+ H L+ ++VT
Sbjct: 240 VLWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLR--DWVT-- 288
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VPEIPQHST 325
+ + L GSDH PV+ L + VP + +
Sbjct: 289 ---------------------EANIQEGLMGSDHCPVFATLADVVTTGSEKVPLLNLVNP 327
Query: 326 PSLASR------------YLPIIRGV------QQTLVSVLMKREVAK-QGKSCKFSGSLP 366
P + R LP+ + +Q++ + K+ AK +S + S
Sbjct: 328 PGMVDRDGRRLREWHPKDVLPLSAKLIPEFDRRQSIRDMFTKKAGAKLSSQSSSLAPSSA 387
Query: 367 AESNSTGD----TEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSA 422
ES GD E N S+ ++ + G S+S+Q ++ R A
Sbjct: 388 TESTPEGDDLARLEQPGANTKTSVADHRLG--MSGASHSASSQ--------SLTGLRPEA 437
Query: 423 NVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVSHDDNNSITDT 481
+ + S SP AR ++ GQ +L+ FF S N +S T T
Sbjct: 438 PSTKRAAGSIDRSRPPSPKRNKNAR-SSRAGTKGQKTLQGFFQPSSTNRVVGRRDSDTTT 496
Query: 482 SLNVNNSVT----DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKK 537
S N N S T+ E P SH PV + E+
Sbjct: 497 SANANASAPFSCKQTTTQPSEPPLSHQAQLASPVDNLPL------------------ERS 538
Query: 538 GKRFLDKERNNV------ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 591
G +++ ++V A W ++ L + +P C+ H EPC++ K+PG GR F
Sbjct: 539 GGDWIEGLPDSVVFDPIQAKESWSKL--LGKRMLPRCE-HNEPCISLTTKRPGVNCGRSF 595
Query: 592 FVCARAEGPASNPEAN----CGYFKWA 614
++CAR GP+ E CG F W+
Sbjct: 596 YICARPLGPSGEKERGSEWRCGTFIWS 622
>gi|302686738|ref|XP_003033049.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
gi|300106743|gb|EFI98146.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
Length = 697
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/403 (30%), Positives = 167/403 (41%), Gaps = 102/403 (25%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
MKI+T+N+NG+R + Q+ S + +LD DADIICFQE K RQ L D+ + G
Sbjct: 1 MKIMTWNINGIRT-IPQYHPWNGLKSHKDILDKLDADIICFQEMKSSRQNLPKDVAVPPG 59
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS---KI 111
Y SFFS + GYSGVA + VK ++ P E+ GL + S +I
Sbjct: 60 YTSFFSFPTK----KAGYSGVAIY--VKDQYT------PFKVEDHLCGLANATASDADRI 107
Query: 112 MEGLEDFSKDELLK-------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
L + +D+EGR ++ D G F+L NVY P SE R+
Sbjct: 108 SPALSSYPMHRFADLDDDEDDPIDFKSLDAEGRTLVADFGLFVLINVYCPNDGSEAQERM 167
Query: 159 QFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA------------------ 191
++K+ F +L +GR + VVGDLN D C+
Sbjct: 168 KYKMDFHRMLSVRVRGLIDEGREVIVVGDLNAVSDVGDHCEGALTVRKIIDEARKEGQEV 227
Query: 192 GPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
G A+ F R W R LVE GG DV + PER+ YTCW + A NYG
Sbjct: 228 GEKEAEEMFYDTMPARRWLRDSLVEHGGPLVDVCKRFWPERKGMYTCWNTKISARASNYG 287
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
RID IL ++ + DI D K GS
Sbjct: 288 ARIDFILVT-------------PYLLPLIKHADIQPDVK-------------------GS 315
Query: 306 DHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLM 348
DH PV + + E+ ++ PS L + G + + LM
Sbjct: 316 DHCPVIVEFHD--EVDVNAIPSSVKANLSLPTGATRVSLQALM 356
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEAN 607
L P C H EP V K G GR F+VC+R GP +P+
Sbjct: 617 LAAPPPPRCYVHDEPAREFTVNKKGENKGRAFYVCSRPVGPGYDKGRAERRREDVDPQYK 676
Query: 608 CGYFKW 613
C +F+W
Sbjct: 677 CDFFRW 682
>gi|307752095|gb|ADN93066.1| putative DNA lyase [Arthroderma benhamiae]
Length = 588
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 177/668 (26%), Positives = 272/668 (40%), Gaps = 163/668 (24%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 215
LN ID A K E+ RI+ R LV GS
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRPVGSTGDTHDTETPPVL 219
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D+ R HP R YTCW A NYG+RID+ILC+ D FV ++
Sbjct: 220 RDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS--------DNIRSWFVESNIQ 271
Query: 276 ECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE-VP------EIPQH 323
E I+ + Y+ +K + + +GSDH PVY + + VP I
Sbjct: 272 EGLIVCVKLELTYR--------SFKNLLISNEQGSDHCPVYASISDRVPFDGKDVHILDI 323
Query: 324 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC----- 378
P A GV+Q + ++ SG L E + + +D
Sbjct: 324 MNPKGA-----FDDGVEQPRSNKIVP---------LALSGRLIPEFDRRRNIKDMFRNHS 369
Query: 379 --SENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSN 436
N + ++ D+ + +S +S E KT + A SHST Q S+
Sbjct: 370 LSQTNSEVKMSTTTDTQAGSEIPGPASQIKSAQE-NKTAPVTMNHAPKRSHSTGAQAPSS 428
Query: 437 HISPFHVDRARKKAKKSQL---GQLSLKSFFHKRSN---VSHDDNNSITDTSLNVNNSVT 490
R ++K + S GQ +L FF VS ++ + +D+ V
Sbjct: 429 K-------RPKQKGRPSGARSNGQQTLVGFFKSEKTSRAVSEENATASSDSPQEAPAEVK 481
Query: 491 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA 550
T S E+ + +++ IP T + S NS V S E K F K
Sbjct: 482 ITPAS--ELASTAENNDSIP-TAVTASPD-----NSIVPSCSPTESWSKVFTRK------ 527
Query: 551 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 607
+P C+GH E C++ V KKPG GR F++C R GP+ + E+
Sbjct: 528 -------------PVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPW 574
Query: 608 -CGYFKWA 614
C F W+
Sbjct: 575 RCPTFIWS 582
>gi|170102771|ref|XP_001882601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642498|gb|EDR06754.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 650
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 147/304 (48%), Gaps = 68/304 (22%)
Query: 1 MKIVTYNVNGLR--QRVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + + +L+ +L+ +ADIICFQE K R L + + Y
Sbjct: 1 MRILTWNINGVRTLPQYHPWNTLKAHDDILNHLEADIICFQEMKSSRPALPKQVAVPPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
+SFFS ++GYSGVAT+ R +P+ AEEG +G+L+ T+ +
Sbjct: 61 DSFFSFPIR----KSGYSGVATYTR-------HSAVIPLKAEEGLSGVLQPKPPLTAAER 109
Query: 111 I--------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
I +EG D++ +DSEGR VI D G F+L NVY P +
Sbjct: 110 ISDSDNYPPNAETASIEGDLDYAD-----LDSEGRTVILDLGLFVLINVYCPNDGNGTEE 164
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------- 198
R ++K+ F +L+ GR + VVGDLN A ID C+ AK
Sbjct: 165 RDKYKMDFHRLLEMRVVGLIKEGREVMVVGDLNACAAIIDHCEGHLMVAKGLAEGLQGEE 224
Query: 199 -----EFRIWFRSMLVE-----SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 248
+ R W R LV GG D+ R PER+ YTCW + A NYGTRI
Sbjct: 225 GFWGKDSRRWMRGFLVPEDEGMPGGFMIDIVRKLWPERKGMYTCWNTKISARDSNYGTRI 284
Query: 249 DHIL 252
D+IL
Sbjct: 285 DYIL 288
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 553 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----------- 601
EW + L P C H E V K G G+RFF+CAR GP
Sbjct: 559 EWTNL--LAPIQPPKCIVHGELAKELTVTKQGANKGKRFFICARPVGPGYDKGRGERLRE 616
Query: 602 -SNPEANCGYFKWA 614
+P C +FKW+
Sbjct: 617 HVDPHWKCDFFKWS 630
>gi|443896515|dbj|GAC73859.1| apurinic/apyrimidinic endonuclease [Pseudozyma antarctica T-34]
Length = 729
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 148/319 (46%), Gaps = 55/319 (17%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQETK+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYKLPDWEACLEHLGADIACFQETKMTRKQLTEAMCILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+FF+ T GYSG T+ R ++P+ AE+G TG L
Sbjct: 61 NAFFNFHPTK-----GYSGTVTYVR-------KSASIPLKAEQGITGRLCDTPAPSNPAV 108
Query: 105 --ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E G + +D +D EGR V+ D G F+LFNVY P + R+++K+
Sbjct: 109 PNEPIGHIPTDTRDDVEPQLWQALDDEGRAVVVDLGLFVLFNVYCPNETGPE--RLEYKM 166
Query: 163 QFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-------GPD-FAKNEFRIWFR 205
++ L GR + +VGD+NI ID CD G D F ++ R WF
Sbjct: 167 TYYQCLAERAHRLIAAGRDVMIVGDMNIIRDPIDHCDPEQSMRENGWDHFHQHPARAWFA 226
Query: 206 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 263
S L G F DV R HPERR+ +TCW + A NYG R+D+ L + L + D
Sbjct: 227 SFLAPQG-KFHDVGRMFHPERRKMFTCWNTLIDARPANYGVRLDYTLVSEGLLPWIKGAD 285
Query: 264 LQSHNFVTCHVNECDILID 282
+Q + + H C I ID
Sbjct: 286 IQPDIYGSDH---CPIYID 301
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 13/74 (17%)
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA-------- 601
A L W I PLC+ H E C A V KPGP GR+F++C+R GP
Sbjct: 600 ASLAWGAI--FSPLPPPLCR-HSEACRAWTVNKPGPNHGRKFWLCSRPVGPGYEKTGRAK 656
Query: 602 --SNPEANCGYFKW 613
NPE C +F W
Sbjct: 657 GDVNPEYRCNFFLW 670
>gi|388855206|emb|CCF51100.1| related to APN2-AP endonuclease, exonuclease III homolog [Ustilago
hordei]
Length = 760
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 149/319 (46%), Gaps = 55/319 (17%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I +N+NGLR Q + L+ ADI CFQE K+ R++L + + Y
Sbjct: 1 MRITVWNINGLRTLKGYQPWYRLPDWEACLEHLGADIACFQEIKMTRKQLTEPICILPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS-------- 107
+FF+ + GYSG T+ R V++P+ AE+G TG L +
Sbjct: 61 TAFFNFHPSK-----GYSGTVTYVR-------KNVSIPLKAEQGITGRLPVTSVSSNPSI 108
Query: 108 -----GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
G + +D +D EGRCV+ D G F+LFNVY P + R+++K+
Sbjct: 109 PDNPIGCVPTDTHDDVDPQTWNALDEEGRCVVLDLGLFVLFNVYCPNETGPE--RLKYKM 166
Query: 163 QFFHVL---------QGRRIFVVGDLNIAPAAIDRCD--------AGPDFAKNEFRIWFR 205
++ L GR++ +VGD+NI ID CD F ++ R WF+
Sbjct: 167 TYYQCLAERAHRLIQSGRQVMIVGDMNIIRDPIDHCDPEQSMKEHGWEHFHQHPARSWFQ 226
Query: 206 SMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH--QKHD 263
S L G F DV R HP+RR+ +TCW + A NYG R+D+ L L + D
Sbjct: 227 SFLAPQG-KFHDVGRMYHPDRRKMFTCWNTLIDARPANYGVRLDYTLVTEGLLPWIKGAD 285
Query: 264 LQSHNFVTCHVNECDILID 282
+Q+ + + H C + +D
Sbjct: 286 IQADVYGSDH---CPVYVD 301
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 82/197 (41%), Gaps = 47/197 (23%)
Query: 444 DRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESH 503
+ ++ K+ S GQ SLK FF K ++ S + T T+ + S+ L++ + P S
Sbjct: 512 ETSKGKSAASLKGQTSLKGFFAKPTSSS-----TATPTASSTKTSI---DLAEADEPPSQ 563
Query: 504 HHSNKIPVTDYSCSVHELHG-----------------VNSSVCSHDQDEKKGKRFLDKER 546
S +I + S H+L + S+ S +E KR
Sbjct: 564 PKSIEITIVTDS---HQLEAHPSYSQQGEEEVSNQDLIESATESQAPEESAAKRV----- 615
Query: 547 NNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----- 601
A L W I T PLC+ H E C A V KPGP GR+F++C+R GP
Sbjct: 616 --GAFLAWGAI--FSPTPAPLCRNHSEACRAWTVNKPGPNHGRKFWLCSRPVGPGYEKSG 671
Query: 602 -----SNPEANCGYFKW 613
NPE C +F W
Sbjct: 672 RAKGDVNPEYRCNFFLW 688
>gi|29420517|dbj|BAC66502.1| DNA lyase [Isaria tenuipes]
Length = 611
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 162/669 (24%), Positives = 263/669 (39%), Gaps = 162/669 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++++FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDAYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 R-------NATCAPILAEEGILGILCPPKSNTPYRELPEDRQIGGYPTLAQLNGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRC+I + F+LF +Y P + D RI+F+ F L+ G+ + +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGIYSPA--NRDESRIEFRQNFVEALEARIRNLITAGKEVIL 184
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W----FRSML---------------VESGGS 214
GDLNI + +D + K + W R +L G
Sbjct: 185 TGDLNIIRSEMDSSNIAEGLRKEGMTMDEWQSMPTRRILNQLLFDGTVIGPRDKAREDGV 244
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRDT----------------- 315
Query: 335 IIRGVQQ-TLVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSENVDR 384
+++G ++ L V+ + + GK + S L E + + D N +
Sbjct: 316 VVKGGKEIALAEVVNPTNMFRDGKRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTN--K 373
Query: 385 SLNNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST-----ITQGSSNHI 438
+ + D G + V + + G+ T S V ++Q H
Sbjct: 374 AAHASFDRGNKTRSVARDAEEMKQLGKTTMPRLQSEGSVGVEREREREREWVSQ-LKRHA 432
Query: 439 SPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 490
P V A KK+K K GQ +L+ FF +S + D V
Sbjct: 433 GPVQVGIPANKKSKGSSETKTKVAGGQTTLQGFFKPKSTTTAD---------------VQ 477
Query: 491 DTSLSQE-EVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 549
L+ +VP + P+ + S+ + +++ GK F E
Sbjct: 478 GGPLAGPCQVPGVPGRAQTPPLPASAASLQTPASWQTGTVKPVEEKSSGKVFDPIE---- 533
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 607
A W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 534 AKESWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDKERDTE 590
Query: 608 --CGYFKWA 614
CG F W+
Sbjct: 591 WRCGTFIWS 599
>gi|358393553|gb|EHK42954.1| DNA lyase [Trichoderma atroviride IMI 206040]
Length = 598
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 160/653 (24%), Positives = 253/653 (38%), Gaps = 144/653 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS K + GYSGVA +
Sbjct: 24 TFQAMFDILEADIVVMQETKIQRKDLTDDMVLVPGWDVYFSLP----KHKKGYSGVAIYT 79
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R P+ AEEG G+L + G E L + DEL
Sbjct: 80 R-------NATCAPIKAEEGILGVLCPPKSSTQFRNLPKDQQIGGYPRPEQLPG-NIDEL 131
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
L +DSEGRCVI + F+L VY P + D R+ F++++ L +G+++
Sbjct: 132 L-LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVDFRMEYLQALDARVRNLISEGKQVV 188
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRI--WFR-------SMLVESGG------------ 213
++GDLN++ + D + K I W + L+ G
Sbjct: 189 LMGDLNVSRSESDSTNVAETLRKEGLSIEEWMNVPSRRLFNHLIYGGTVQGDRDEGREQP 248
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+ +D+ R HP R TCW + N G+RID++LC+ N +
Sbjct: 249 ALWDLCREFHPTREGMNTCWDTKRNTRPANNGSRIDYVLCS-------------NGLKDW 295
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA-SRY 332
E DI L GSDH PVY + +V P LA
Sbjct: 296 FTEADI-------------------QEGLMGSDHCPVYATIADVVTTDTEQVPLLAVMNP 336
Query: 333 LPIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTEDCSENVDRS-----L 386
++ Q L MK + K +F T + SE +R+ +
Sbjct: 337 TSMVTRDGQRLREWHMKDVLPLSAKLIPEFDRRQSIRDMFTKSADQASELSNRAEYRLGM 396
Query: 387 NNYCDSGILQGVYCSSSNQESEGEFTKT-IENCRDSANVASHSTITQGSSNHISPFHVDR 445
++ DS L+ + S S + ++ D ++ S + S
Sbjct: 397 SDASDSSKLKPLTESRSEAPPRAKRAAGFVDPLSDGGSLKRSKKSNGAMSVNPSLMAEKN 456
Query: 446 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
AR S GQ +L+ FF S+++ + NN D S S ES
Sbjct: 457 ARSTTTVSTKGQKTLQGFFKPVSSLAANRNNDGADWSGKSPGS------------ESQAK 504
Query: 506 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
N P++ L + + Q ++ + L RR+ +
Sbjct: 505 QNPRPIS--------LQTETNQIFDPVQAKESWSKLLG-----------RRV-------L 538
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
P C+ H EPC++ V KKPG G F++CAR GP+ E + CG F W+
Sbjct: 539 PRCE-HNEPCISLVTKKPGVNCGASFYICARPLGPSGEKEKDSEWRCGTFIWS 590
>gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 159/669 (23%), Positives = 262/669 (39%), Gaps = 166/669 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDVYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
+ P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 K-------NATCAPILAEEGILGILCPPKSNTPYRELPEDRQIGGYPTLAQLSGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRC+I + F+LF VY P + D RI+F+ F L+ G+++ +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLVAAGKQVIL 184
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 214
GDLNI + +D + K + W +L + G
Sbjct: 185 TGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAREDGV 244
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRD-----------------K 315
Query: 335 IIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSENVDR 384
+++G ++T L +L + + G+ + S L E + + D N +
Sbjct: 316 VVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTN--K 373
Query: 385 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA-------SHSTITQGSSNH 437
+ + D G G + + E + T+ + +V ++Q + H
Sbjct: 374 AAHASFDRGNKTG--SGARDGEDMTQLGTTMPRLQSEGSVGVERERERERERVSQ-NKRH 430
Query: 438 ISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSV 489
P V A KK+K K GQ +L+ FF +S + V
Sbjct: 431 AGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAGPCQVPGRA 490
Query: 490 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 549
L+ V S + P + +V + ++ GK F E
Sbjct: 491 QTPPLTTRTV------SRQTPTSSQMVTVKPV-----------EENSSGKVFDPIE---- 529
Query: 550 ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN-- 607
A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 530 AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPSGDKERDTE 586
Query: 608 --CGYFKWA 614
CG F W+
Sbjct: 587 WRCGTFIWS 595
>gi|169850286|ref|XP_001831840.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
gi|116507128|gb|EAU90023.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
Length = 609
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 164/363 (45%), Gaps = 97/363 (26%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRK---LLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+++T+N+NG+R + + +L+ +L+ ++DIICFQE K R+ L ++ + +
Sbjct: 1 MRLLTWNINGVRTLPQYHPWNTLKTFDDILNHLESDIICFQEMKSGRKLLTQEVAVPPSF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS-KIMEG 114
+SFFS +TGYSGVAT+ R K VA+P+ AEEG +G+L+ E
Sbjct: 61 DSFFSFPIK----KTGYSGVATYTRSK-------VAVPLKAEEGLSGILQPKPPLAPEER 109
Query: 115 LEDFS-----------------KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
+ +++ + + +DSEGR ++ D G F+L N Y P + R
Sbjct: 110 ISNYATYPPNLLDDDMHDADDDRLDYKNLDSEGRAIVVDMGLFVLINTYCPNDGTGTEER 169
Query: 158 IQFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDA-------------GPD 194
FK+ + +L+ R + VVGDLN A ID C+ G +
Sbjct: 170 EAFKMDYHRLLETRVRGLIEKEKREVIVVGDLNACAAVIDHCEGELMIKKGQAMGLEGEE 229
Query: 195 -FAKNEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F E+R W R LV+ +GG+ D+ R P+R YTCW + A + NYGTRID
Sbjct: 230 GFWGKEYRRWIRDWLVKEDGTGGTLVDITRKLWPDREGMYTCWNTKISARETNYGTRIDF 289
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST--RLEGSDHA 308
IL PG P W T ++GSDH
Sbjct: 290 ILVT---------------------------------PGLVP-WIKASDTLPNIKGSDHC 315
Query: 309 PVY 311
PVY
Sbjct: 316 PVY 318
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 560 LMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
L P CK H EP V KPGP G+RFF+C+R
Sbjct: 566 LAPIQPPKCKAHGEPAKEYTVNKPGPNKGKRFFICSR 602
>gi|395331650|gb|EJF64030.1| DNase I-like protein [Dichomitus squalens LYAD-421 SS1]
Length = 686
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 126/418 (30%), Positives = 175/418 (41%), Gaps = 103/418 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F + +LD +ADIICFQE K R L D+ + Y
Sbjct: 1 MRILSWNINGIRTLPKYHPWNTFKTCEGILDEINADIICFQEMKSSRANLPRDVALPGPY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
SFFS + KG GYSGVA + + P+ AEEG +G L+ ++ +
Sbjct: 61 HSFFSFP--TSKG--GYSGVAVYV-------DSRKLTPLKAEEGLSGKLQPNPPLSADER 109
Query: 111 IMEGLE-----DFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI 158
I D DE +DSEGR ++ D G F+L NVY P S++ R+
Sbjct: 110 ISPSYPSPHDVDLYADEEGAVPASFDALDSEGRALVLDFGLFVLVNVYCPAETSDE--RL 167
Query: 159 QFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIW 203
FK+ F +LQ R + V+GD+N+ A ID CD F + R W
Sbjct: 168 PFKMNFHLLLQERVRRLVEDERREVVVLGDINVCAAPIDHCDGHLPSTVAAFYDHPARAW 227
Query: 204 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
FR + G DV R HP+R+ +TCW + T A + NYG RID++L L
Sbjct: 228 FRRW-IGPDGPLTDVIRQCHPDRKGLFTCWDTRTQARETNYGARIDYVLVTRGLLP---- 282
Query: 264 LQSHNFVTCHVNECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL------- 314
W G + L GSDH PVY+ L
Sbjct: 283 ------------------------------WIAAGDIQPALRGSDHCPVYVDLRDEITLA 312
Query: 315 -GEVPEI--PQHSTPSL------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSG 363
GE + TP L A+RY G Q L + K AK + G
Sbjct: 313 SGETIALRDAMKQTPGLRDPPRTAARYWDEFAGRQMVLSAFFGKGAAAKTKTKTETDG 370
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 613
P C H EP V KPGP G+ F++CAR GP + C YFKW
Sbjct: 606 PRCTVHDEPARLYTVNKPGPNRGKTFYLCARPVGPGYDKGRGERLREEVDHRYRCNYFKW 665
Query: 614 A 614
A
Sbjct: 666 A 666
>gi|389745395|gb|EIM86576.1| DNase I-like protein [Stereum hirsutum FP-91666 SS1]
Length = 677
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 161/367 (43%), Gaps = 101/367 (27%)
Query: 1 MKIVTYNVNGLRQRVSQ------FGSLRKLLDSFDADIICFQET-----KLRRQELKSDL 49
M+I+T+N+NG+R V Q F + ++LD+ ADI+CFQ + K RQ L ++
Sbjct: 1 MRILTWNLNGVRT-VPQYYPWNTFKTWGEILDALHADILCFQGSSSIAMKTTRQALTRNI 59
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE---- 105
+ + Y+SFFS + GYSGVA + +ST ALP+ AEEG +GL++
Sbjct: 60 AVPENYDSFFSLP----TAKGGYSGVAVY-------TSTHTALPLKAEEGLSGLIQPRPP 108
Query: 106 ----------------------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S+ + +LL +DSEGR ++ D G F+L
Sbjct: 109 LSPHERISSTYPSAHTMSLMPSNPTSEDLNPTTQSKPTDLLSLDSEGRALVLDFGLFVLI 168
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDAGP 193
N+Y P S+ R+ FKL + +L+ R + VVGD+N+ ID D
Sbjct: 169 NLYCPNETSD--ARLPFKLNYHRMLEERVRILVEREEREVIVVGDINVCAEPIDHGDGHL 226
Query: 194 DFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 248
K F R WF L + G DV R P+R+ YTCW G + NYG+RI
Sbjct: 227 PSCKEGFWEPPCRAWFYEWL-DPKGKMIDVVRRFWPDRKGMYTCWNQKIGGRESNYGSRI 285
Query: 249 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK-GGMSTRLEGSDH 307
D+IL PG P K G + ++GSDH
Sbjct: 286 DYILVT---------------------------------PGLMPWIKHGDIEPTIKGSDH 312
Query: 308 APVYMCL 314
PVY+ L
Sbjct: 313 CPVYVDL 319
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP------------EANCGYFKW 613
P C H EP V KPGP G+ FF+C+R GP + + C +FKW
Sbjct: 598 PKCIVHGEPTKELRVNKPGPNKGKTFFICSRPVGPGYDKGRMERLRDEVDHQWRCNFFKW 657
Query: 614 A 614
+
Sbjct: 658 S 658
>gi|29501194|dbj|BAC67539.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 164/673 (24%), Positives = 261/673 (38%), Gaps = 174/673 (25%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVILQETKIQRKDLQDDMVLVPGWDVYFSLPQH----KKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
+ P+ AEEG G+L E + + G ++ DE L
Sbjct: 75 K-------NATCAPILAEEGILGILCPPKSNTPYREQPEDRQIGGYPTLAQLSGDVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRC+I + F+LF VY P + D RI+F+ F L+ G+++ +
Sbjct: 128 -LDSEGRCLILEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALEARIRNLIAAGKQVIL 184
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 214
GDLNI + +D + K + W +L + G
Sbjct: 185 TGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTRRILNQLLFDGSVIGPRDKAREDGV 244
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP RR +TCW + N G+RID+ILC+ D FV ++
Sbjct: 245 LWDICRCFHPTRRGMHTCWDTKRNTRPANLGSRIDYILCS--------DGIKDWFVDSNI 296
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
E L GSDH PVY + +
Sbjct: 297 QEG------------------------LMGSDHCPVYATMRD-----------------K 315
Query: 335 IIRGVQQT-LVSVLMKREVAKQGKSCK---------FSGSLPAESNSTGDTEDCSEN--- 381
+++G ++T L +L + + G+ + S L E + + D N
Sbjct: 316 VVKGGKETSLAEILNPANMFRDGQRIRNWEQRDALALSAKLIPEFDRRRNIRDMFTNKAA 375
Query: 382 ---VDRSLNNYCDSGILQG-----VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQG 433
DR N SG G + + +SEG E R+ V+ +
Sbjct: 376 HASFDR--GNKTGSGARDGEDMTQLGTAMPRLQSEGSVGVERERERERERVSQN------ 427
Query: 434 SSNHISPFHVD-RARKKAK-------KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
H P V A KK+K K GQ +L+ FF +S + V
Sbjct: 428 -KRHAGPAQVGIPANKKSKGSSDTKTKVASGQTTLQGFFKPKSTATAGGQGGPLAGPCQV 486
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 545
L+ V S + P + +V + ++ GK F E
Sbjct: 487 PGRAQTPPLTTRAV------SRQTPTSSQMVTVKPV-----------EENSSGKVFDPIE 529
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 605
A W ++ L +P C+ H+EPC++ V KKPG GR F++C R GP+ + E
Sbjct: 530 ----AKESWSKL--LGRRVVPKCE-HEEPCISLVTKKPGVNCGRSFYICPRPVGPSGDKE 582
Query: 606 AN----CGYFKWA 614
+ CG F W+
Sbjct: 583 RDTEWRCGTFIWS 595
>gi|367021856|ref|XP_003660213.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
gi|347007480|gb|AEO54968.1| hypothetical protein MYCTH_2298234 [Myceliophthora thermophila ATCC
42464]
Length = 644
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 172/704 (24%), Positives = 276/704 (39%), Gaps = 159/704 (22%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + + + D+ +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFSYQPWRENRTFQAMFDTLEADIVVLQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS R + GYSGVA + R + P+ AEEG TG L S
Sbjct: 63 DVFFSLPRY----KKGYSGVAVYTR-------SSKCCPIRAEEGITGALSPPNSSTK--F 109
Query: 116 EDFSKDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRC+I + F+L VY P + D R +
Sbjct: 110 RDLPADQQIGGYPLPEQLSNSIDEQTLDSEGRCIILEFPAFVLIGVYSPA--TRDETRTE 167
Query: 160 FKLQFFH---------VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF----- 200
++ F V G+++F+ GDLNI +D K EF
Sbjct: 168 YREAFIDAMDARVRNLVAMGKQVFLCGDLNIIRDELDAAGLPERLRKEGVTLEEFFATHS 227
Query: 201 RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTR 247
R + +L GG +D+ R HP R YTCW + A N+G R
Sbjct: 228 RRFLNQLLF--GGRVIGERQEGREQPVLWDLCREFHPTRAGMYTCWETRKNARPGNFGNR 285
Query: 248 IDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 307
ID++LC+ F+ ++ E L GSDH
Sbjct: 286 IDYVLCSSGIKDW--------FIDSNIQEG------------------------LLGSDH 313
Query: 308 APVYMCLGEVPEI-------------PQHSTPSLASR------YLPIIRGV------QQT 342
PVY + + ++ P + R LPI + +Q+
Sbjct: 314 CPVYATIADTVDVGGSQVHIEDIMNPPGMFKDGVRQREWCQKDLLPISAKLIPEFDRRQS 373
Query: 343 LVSVLMKREVAKQGKSCK----FSGSLPAESNSTGDTEDCSENVDRSLNNYCDS-GILQG 397
+ + K+ A + S S P ++ G +++ ++ S++ D
Sbjct: 374 IKDMFFKKASASAKTTSSPNTISSQSTPTDTVPGGGSDETQKDSTVSMSQAIDQPASTTT 433
Query: 398 VYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLG- 456
+ ++SN + K I R +A+ S + + +S R+ + K+ G
Sbjct: 434 LPNTASNNITSVPPQKPIPQKRQAASSTSPNRPQKKGKLALS-------RESSSKTTAGF 486
Query: 457 -QLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 515
Q SLK FF ++ ++ + + N ++T E PES T S
Sbjct: 487 SQSSLKGFFKPKTPTAN--ATAAIEAGDTTNPAITPDPNPSE--PESKQD------TSAS 536
Query: 516 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV-ALLEWRRIQQLMETSIPLCKGHKEP 574
NSS S + + F DK + + A W ++ L + +P C+ H E
Sbjct: 537 QGNSSQSTKNSSGDSVGESPRTESSFTDKVFDPIQAKDSWSKL--LGKRVVPKCE-HGED 593
Query: 575 CVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
C V KK G GR FF+CAR GP+ E C F W+
Sbjct: 594 CQMLVTKKAGVNCGRAFFMCARPLGPSGEKEQGTEFRCRTFIWS 637
>gi|358369104|dbj|GAA85719.1| DNA lyase Apn2 [Aspergillus kawachii IFO 4308]
Length = 626
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/367 (30%), Positives = 160/367 (43%), Gaps = 95/367 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R S + + D +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFSYEPWRGKRTFDAMFDILEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS R + GYSGV + R P+ AEEG +G+L
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NSTCAPIRAEEGLSGMLCPPNSSVPFRE 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVR 157
+ G +E L F D +DSEGRCVI + F+L +Y P R +S D+ R
Sbjct: 112 LPENQQIGGYPTIEQLSQFDVDAAT-LDSEGRCVILEFPAFVLLGIYSPANRDESRDSFR 170
Query: 158 IQF------KLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFR 201
F +++ V G+R+FV GDLNI+ ID AG +F R
Sbjct: 171 RNFIDLMDARIRNL-VAMGKRVFVTGDLNISRGEIDAAHAGEAIRKGTLTEDEFVSTHAR 229
Query: 202 IWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F +L E G D+ RS HP+R+ YTCW A NYG+RID+
Sbjct: 230 RVFNQLLSDGKVIGEREEGREQPVLHDICRSFHPDRKGMYTCWEQRINARPGNYGSRIDY 289
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
+LC+ D+Q F ++ E L GSDH PV
Sbjct: 290 VLCS-------LDMQDW-FCDSNIQEG------------------------LMGSDHCPV 317
Query: 311 YMCLGEV 317
Y E
Sbjct: 318 YATFKET 324
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 553 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 608
+W ++ + PLC+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 555 DWSKL--FTKKRAPLCEGHQEPCISLTTKKPGVNCGRSFWICPRPLGPSGNKEKGTQWRC 612
Query: 609 GYFKWA 614
F WA
Sbjct: 613 PTFIWA 618
>gi|159469514|ref|XP_001692908.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277710|gb|EDP03477.1| predicted protein [Chlamydomonas reinhardtii]
Length = 264
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 127/266 (47%), Gaps = 91/266 (34%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++IV++NVNGLR+ ++ FGSL K L + +AD++C QE KL R +LK +L +ADG+ESFF+
Sbjct: 3 LRIVSWNVNGLRRVIAHFGSLDKFLSALEADVLCIQEHKLTRADLKRELALADGWESFFA 62
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T +GR
Sbjct: 63 FT----RGR--------------------------------------------------- 67
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFFHVLQ--------- 169
EL +D EGR VIT+HG +L NVYGP SE+ R FK+ FF LQ
Sbjct: 68 -ELRALDGEGRVVITEHGALVLVNVYGPAITSEERAEERGAFKMTFFRALQHRLDGFLAA 126
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER-RE 228
GRR+ V+GD NI+PAA DR A P F P+R R+
Sbjct: 127 GRRLVVLGDFNISPAAADRAGATP-----------------------RTFEPHRPDRLRD 163
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AYTCW +++GA N+G+RID IL A
Sbjct: 164 AYTCWNTSSGARVNNFGSRIDLILAA 189
>gi|367041942|ref|XP_003651351.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
gi|346998613|gb|AEO65015.1| hypothetical protein THITE_2111508 [Thielavia terrestris NRRL 8126]
Length = 640
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 180/711 (25%), Positives = 280/711 (39%), Gaps = 176/711 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + S + + D+ +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFGYQPWRENRSFQAMFDTLEADIVVMQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R + P+ AEEG TG+L S +K E
Sbjct: 63 DVYFSFP----KYKKGYSGVAIYTR-------SSKCCPIRAEEGITGVLCPPNSSTKFRE 111
Query: 114 GLEDF-------------SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
D S DE +DSEGRCVI + F+L VY P + D R +F
Sbjct: 112 LPSDLQIGGYPKPGQLSDSIDEQT-LDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEF 168
Query: 161 KLQFFH---------VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF------ 200
+ + V G+++F+ GDLNI + +D K +EF
Sbjct: 169 REAYIDAIDVRVRNLVAMGKQVFLCGDLNIVRSPLDTAGLAERLRKEGMTLDEFMSTPPR 228
Query: 201 ----RIWFRSMLVESGGS--------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRI 248
+ F +V GG +D+ R HP R +TCW + A N+G+RI
Sbjct: 229 RLLNHLVFGGTVV--GGRDEGREEPVLWDLCREFHPTRAGMFTCWETKKNARPGNFGSRI 286
Query: 249 DHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHA 308
D++LC+ F+ ++ E L GSDH
Sbjct: 287 DYVLCSSGIKDW--------FIDANIQEG------------------------LLGSDHC 314
Query: 309 PVYMCLGEV-----PEIPQHSTPSLASRYLPIIR-------GVQQTLVSVLMKREVAKQG 356
PVY +G+ +P + A + R + T ++ + + +
Sbjct: 315 PVYATIGDAVSFGDTNVPIEDVMNPAGMFKGGKRLREWSSKDLLPTSAKLIPEFDRRQSI 374
Query: 357 KSCKFSGSLPAESNSTG---DTEDCSENVDRSLNNYCDSGILQ--------------GVY 399
+ F S P+ ST D +D +D + N +GIL+ V
Sbjct: 375 REMFFKKSAPSAKTSTQAQMDNQDGRGVLD-AANGVKTTGILENNTTPGSDRNPTIASVS 433
Query: 400 CSSSNQESEGEFTKTIENCRDS-ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQL 458
SS+ S K++ R + ++ A +G N ++RA + Q
Sbjct: 434 VSSTTPNSAASPQKSVPTKRQAESSTAVRRPQKKGKGN------LNRAGSTNSTTGSSQS 487
Query: 459 SLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSC-S 517
+LK FF ++ V +D T E PE D C
Sbjct: 488 TLKGFFKPKTPVPDED-------------PPTPAQGVDESSPELK--------ADRDCPG 526
Query: 518 VHELHGV--NSSVCSHD-------QDEKKGKRFLDKERNNVALLE-WRRIQQLMETSIPL 567
V G NS + D Q +K +K + + E W ++ L + +P
Sbjct: 527 VQTASGAESNSGTSTGDDVDNTLEQSQKPEGSSSEKVFDPIQAKESWGKL--LGKRVVPK 584
Query: 568 CKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
C+ H E C V KKPG GR FF+CAR GP+ + E C F W+
Sbjct: 585 CE-HGEDCQMLVTKKPGINCGRSFFMCARPLGPSGDKEQGTEFRCRTFIWS 634
>gi|339236551|ref|XP_003379830.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
gi|316977461|gb|EFV60557.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
Length = 462
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 134/275 (48%), Gaps = 41/275 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVNGLR V ++K L S DIIC QETKL L S L + DG++S+F+
Sbjct: 1 MKITTWNVNGLRSIVD----IQKTLLSLGCDIICLQETKLTYDTLDSSLALIDGFDSYFA 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS--GSKIMEGLEDF 118
+T R GYSGVAT+C KS FS P F L + L F
Sbjct: 57 FCQT----RRGYSGVATYC--KSDFS------PDLVFNNFHDLYRQFQFAHPNRQHLGIF 104
Query: 119 SKDELLKIDSEGRCVITDHG--------HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ- 169
D +D+EGR + T H + + N+Y PR D E R F+L F +LQ
Sbjct: 105 --DNFDTLDNEGRMLATRHKLTNCNNAEYLFILNIYCPRVDPEQMDRQNFRLAFLKLLQH 162
Query: 170 --------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESG----GSFFD 217
G + ++GD+N+ ID CD +F +E RIW L ++ G D
Sbjct: 163 CTECLLNSGNYVLILGDMNLCHKRIDHCDPDQEFDTDEARIWLCEFLYDTDKNADGKMVD 222
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
++R +P + +TCW S A N+GTRID+IL
Sbjct: 223 LYRIHYPNKGRMFTCWNSQKRARILNFGTRIDYIL 257
>gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
Length = 624
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 165/670 (24%), Positives = 267/670 (39%), Gaps = 147/670 (21%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 19 TFQAMFDILEADIVVMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 74
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-------------FSKDELL 124
R P+ AEEG G+L S + E ED + DE L
Sbjct: 75 R-------NATCAPILAEEGVLGILCPPKSNTPYRELPEDQRIGGYPTSNQLSGNVDEAL 127
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 128 -LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVEALDARIRNLITAGKQVIL 184
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 214
GDLNI + +D + K + W F ++ E
Sbjct: 185 TGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQLVFEGTVIGDRDTGREHAV 244
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D V ++
Sbjct: 245 LWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS--------DGIKDWIVDSNI 296
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-------GEVPEIPQHSTPS 327
E L GSDH PVY + G + + PS
Sbjct: 297 QEG------------------------LMGSDHCPVYATMSDKVTKNGTEMTLAEAMNPS 332
Query: 328 LASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCS 379
+R +Q L+ +R ++ + K S +L G +
Sbjct: 333 NMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKASQTLLHPEKFGGQSLQI- 391
Query: 380 ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHIS 439
N D + +SG +SS ES F S ++ + +GS
Sbjct: 392 RNADMAAYTARNSGT-----TASSGAESTNCFGAAAPLV--SVGGTNNVNLQRGSQTKRR 444
Query: 440 PFHVDRA----RKKAKKS-----QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 490
P +A K+ K S + GQ +L+ FF ++ V+ +NNS+T + V
Sbjct: 445 PDGPAQAAVPTNKRGKNSSDTKTKTGQTTLQGFFKPKT-VASLENNSVTSVAEQVPAGSG 503
Query: 491 DTSLSQEEVPESH--HHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN 548
+ +E P ++ + P S S SS+ + K ++ + +
Sbjct: 504 RVPVRAQEAPLANGVRRQTRTPSPIMSGS--------SSITTKGLSPAKVFDPIEAKES- 554
Query: 549 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 607
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ + E +
Sbjct: 555 -----WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGPSGDKERDT 606
Query: 608 ---CGYFKWA 614
CG F W+
Sbjct: 607 EWRCGTFIWS 616
>gi|342878043|gb|EGU79454.1| hypothetical protein FOXB_10039 [Fusarium oxysporum Fo5176]
Length = 593
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 161/661 (24%), Positives = 247/661 (37%), Gaps = 146/661 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 3 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 55
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L + K D +D+ + +D
Sbjct: 56 ----NSKCAPIRAEEGVTGIL--TAPKSTTRYRDLPEDQQIGGYPRPDQLDGIIDEATLD 109
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCVI + F+LF VY P + D R F+ FF L+ G+++ + GD
Sbjct: 110 SEGRCVILEFPGFVLFGVYSPA--TRDETRDDFRTGFFQALEVRIRNLVAAGKQVILTGD 167
Query: 179 LNIAPAAIDRCDAG----------PDFAKNEFRIWFRSMLVESG-----------GSFFD 217
LN+ + +D + D+ R F ++ E +D
Sbjct: 168 LNVVRSELDSTNVSETLRKEGIDLSDWMNAPVRRIFNQLIFEGSVLGERDQGREKPVLWD 227
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HPER TCW + N G+RID++LC+ D F ++ E
Sbjct: 228 LCRCFHPERVGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNYSNIQEG 279
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP-II 336
L GSDH PV+ L + + L P +
Sbjct: 280 ------------------------LMGSDHCPVFANLSDKVTVGDKECALLEMMNPPGMF 315
Query: 337 RGVQQ----------TLVSVLMKREVAKQGKSCKFS--GSLPAESNSTGDTEDCSENVDR 384
G ++ L S L+ +Q F+ + P E T +
Sbjct: 316 NGDERLRDWSPKDHLPLSSKLIPEFDRRQSIRDMFTKKAAPPREPTRT-------DTPAE 368
Query: 385 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVD 444
LNN S S +N S +T + + SA+ S + PF
Sbjct: 369 PLNNGNSS-----ASGSPTNASSTPRLGETTNSTKLSASQPSSKRPGTAADTTSRPFKKT 423
Query: 445 R----ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
+ A K GQ +L+ FF ++ + D + + N S T + P
Sbjct: 424 KSFTGANDTKSKVAQGQRTLQGFFKPKAPAAQDGKAEL--VAANSTPSTTKKPAGSGKAP 481
Query: 501 ESHHHSNKIP---VTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRI 557
S + P T+ S L G +D R D A W ++
Sbjct: 482 ASAQRLSNTPQATPTEKSSPTVPLRG---------KDPDPSDRVFDPIE---AKESWSKL 529
Query: 558 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
L + P C+ H EPC++ KKPG GR F++C R GP+ E N C F W
Sbjct: 530 --LGKRVAPRCE-HDEPCISFTTKKPGVNCGRMFYICPRPLGPSGEKERNSEWRCSTFIW 586
Query: 614 A 614
+
Sbjct: 587 S 587
>gi|336463554|gb|EGO51794.1| hypothetical protein NEUTE1DRAFT_149501 [Neurospora tetrasperma
FGSC 2508]
Length = 654
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 166/686 (24%), Positives = 265/686 (38%), Gaps = 155/686 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ +ADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLEADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R + P+ AEEG TG+L S D D+ +
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
++DSEGRCVI + F+L VY P + D RI+F+ F + G+ +F
Sbjct: 133 AQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRIEFRQAFIDAMDARVRNLVSMGKEVF 190
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 213
+ GDLNI +D K + F + +V G
Sbjct: 191 LCGDLNIIRNEMDTAGLPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKP 250
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+D+ R HP+R YTCW + A N+G+RID++LC+ FV +
Sbjct: 251 VLWDLCREFHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KDWFVDAN 302
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYL 333
+ E L GSDH PVY + + + S +
Sbjct: 303 IQEG------------------------LLGSDHCPVYATISD--------SVSRDGVII 330
Query: 334 PIIRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAESNSTGDTED------CSENVDRSL 386
PI + + +R+ K C S L E + +D N +S
Sbjct: 331 PITDIMNPEGMFKNGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSNTPKSA 390
Query: 387 NNYCDSG-ILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 445
DS I SS + +T S S T+ + + SP R
Sbjct: 391 TPAADSQEIPDSPNTSSITVNATTVLQETASFASSPKQWLSQSAATEPALSQTSPVPKRR 450
Query: 446 ARKKA----------------KKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTS 482
A + A S+ G Q +L FF ++ V+ D+ + + +
Sbjct: 451 AEQPAPYIRPPKKAKAALAKQPSSKTGPGPSQSTLMGFFKAKTPTPTVNPDERHGPINGN 510
Query: 483 LNVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELH----GVNSSVCSHD 532
+ + +T+L E P+ + D H+ + G NS+V
Sbjct: 511 NHSPATTAETALRNEPFTAKGSQPKQSFEVDNFEERDEHAVEHKTNPTPYGENSTVM--- 567
Query: 533 QDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
+DE KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F+
Sbjct: 568 EDEGKGKTIFDPIQNRES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFY 621
Query: 593 VCARAEGPASNPEAN----CGYFKWA 614
+CAR GP+ N E C F W+
Sbjct: 622 MCARPLGPSGNKETGTEFRCKTFIWS 647
>gi|390600243|gb|EIN09638.1| DNase I-like protein [Punctularia strigosozonata HHB-11173 SS5]
Length = 567
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 110/382 (28%), Positives = 164/382 (42%), Gaps = 95/382 (24%)
Query: 14 RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYS 73
R + + +L + DAD+ICFQE K R + ++ + Y++F S + + GYS
Sbjct: 5 RWNTYKDFEGILMALDADVICFQELKSCRANTERNVAVPGLYDAFLSYPVS----KGGYS 60
Query: 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSK-------IMEGLE 116
GV F +++E A+P+ AEEG +G L S SK + E
Sbjct: 61 GVGVF-------TNSENAMPLKAEEGLSGTLPGNTQLAPEDRISASKPSADDMTLYPDEE 113
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ------- 169
+ +L+ +DSEGR ++ D G F+L NVY P S+ R+ FK+ + +L+
Sbjct: 114 GNTPSDLIGLDSEGRALMVDFGLFVLINVYCPNETSD--ARLPFKMNYHLMLEERVRELV 171
Query: 170 --GRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
GR + VVGD+NI +D CD F + R WF + L + G DV R
Sbjct: 172 GEGREVMVVGDMNICATPLDHCDGHLPSNAATFWDHPARAWFHNWL-DPNGLMIDVLRRF 230
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
PER+ YT W G + NYGTR+D+IL
Sbjct: 231 WPERKGMYTVWNQKIGGRETNYGTRVDYILVT---------------------------- 262
Query: 283 YKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHS--------------TPS 327
PG P K + ++GSDH P+++ L ++ +P TP
Sbjct: 263 -----PGLLPWVKAADIEASVKGSDHCPIWVDLHDI--LPGQDIKLRDSLKMNQFRVTPR 315
Query: 328 LASRYLPIIRGVQQTLVSVLMK 349
LA++Y P G Q L S K
Sbjct: 316 LAAKYWPEFSGKQTLLSSFFGK 337
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 558 QQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPE 605
Q +P C H E V KPGP G+ F++C+R GP NPE
Sbjct: 486 QMFAPIPVPRCTVHNELAKEWTVNKPGPNKGKTFYLCSRPVGPGYDKGRGERLREEVNPE 545
Query: 606 ANCGYFKWA 614
C +FKWA
Sbjct: 546 YRCNFFKWA 554
>gi|385145200|emb|CCD57787.1| putative DNA lyase apn2 protein [Neurospora africana]
Length = 627
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 167/683 (24%), Positives = 264/683 (38%), Gaps = 155/683 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADIVVMQEIKIQRKDLRDDIVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCAPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGD 178
SEGRCVI + F+L VY P + D R +F+ F + G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFLCGD 165
Query: 179 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESGGS------------- 214
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISIPSRRFLNQIVFGGXXXXRVIGEPDGGRE 223
Query: 215 ---FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
+D+ R HP+R YTCW + A N+G+RID++LC+ FV
Sbjct: 224 KPVLWDLCRELHPKRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KDWFVD 275
Query: 272 CHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASR 331
++ E L GSDH PVY +G+ + S
Sbjct: 276 ANIQEG------------------------LLGSDHCPVYATIGD--------SVSKDGV 303
Query: 332 YLPIIRGVQQTLVSVLMKREVAKQGKSC---------KFSG---------------SLPA 367
+PI V + +R+ K C +F G + P
Sbjct: 304 TIPITDIVNPEGMFENGQRQREWSQKDCLPTSAKLIAEFDGRQSIKDMFFKKKTPSTTPP 363
Query: 368 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 427
+ D++D + S LQG S+S + + T E +
Sbjct: 364 SATPAADSQDTFYPPNTSSITVNAIAALQGAASSASLPKQLLSQSTTTEPALSQTSPVPK 423
Query: 428 STITQGSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 480
Q SS P A K S+ G Q +L FF ++ V+ D+ + +
Sbjct: 424 RRAEQPSSYIRPPKKAKAALAKQPSSKNGPGPSQSTLMGFFKPKTPTPTVNPDERLAPVN 483
Query: 481 TSLNVNNSVTDTSLSQEEVPESH----HHSNKIPVTDYSCSVHELHGVNSSVC-SHDQDE 535
+ + ++ +T+ E P + ++ I D H+ V + +DE
Sbjct: 484 GNNHSPATIAETTSRNEPSPANQPKRPFEADDIEEWDEDAVEHKTSPTTYRVTNTAMEDE 543
Query: 536 KKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 595
KGK D +N + W ++ L + +P C+ H E C + V KKPG GR F++CA
Sbjct: 544 GKGKTVFDPIQNKES---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRSFYMCA 597
Query: 596 RAEGPASNPEAN----CGYFKWA 614
R GP+ + E C F W+
Sbjct: 598 RPLGPSGDKETGTEFRCKTFIWS 620
>gi|385145211|emb|CCD57796.1| putative DNA lyase apn2 protein [Neurospora sublineolata]
Length = 616
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 168/673 (24%), Positives = 257/673 (38%), Gaps = 146/673 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ ADI+ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLGADIVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTSGQLSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGD 178
SEGRCVI + F+L VY P + D R +F+ F + G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVSMGKEVFLCGD 165
Query: 179 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSF 215
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPVL 223
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
+D+ R HP R YTCW + A N+G+RID++LC+ FV ++
Sbjct: 224 WDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCSSGI--------KGWFVDANIQ 275
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPI 335
E L GSDH PVY +G+ T S +PI
Sbjct: 276 EG------------------------LLGSDHCPVYATIGD--------TVSKDGTTIPI 303
Query: 336 IRGVQQTLVSVLMKREVAKQGKSC-KFSGSLPAE--------------SNSTGDTEDCSE 380
V + +R+ K C S L E D +D S+
Sbjct: 304 TDIVNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKRKTPAADNQDTSD 363
Query: 381 NVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISP 440
+ S S LQ S+ + + + T E + Q +S+
Sbjct: 364 PPNTSSTTAHTSTALQEAASSAPSPKQSLSQSTTTEPALSQTSPGPKRRAEQPASSIRPQ 423
Query: 441 FHVDRARKKAKKSQLG----QLSLKSFFHKRSNVSHDDNNSITDTSLNVNN----SVTDT 492
V A K S+ G Q +L FF ++ N + +N NN ++ +T
Sbjct: 424 KKVKAALSKQPSSKTGPGPSQSTLMGFFKPKTPTPT-LNPEERPSPINGNNHSLATIAET 482
Query: 493 SLSQEEVPESHHHSNK-IPVTDYSCSVHELHGVNSSVCSHD------QDEKKGKRFLDKE 545
+ E P + D + +S H +DE KGK D
Sbjct: 483 ATRNEPSPAKGSQPKRSFEADDIEERDEDAVEPKTSPAKHKATDTAMEDEGKGKTVFDSI 542
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 605
+N + W ++ L + +P C+ H + C + V KKPG GR F++CAR GP+ + E
Sbjct: 543 QNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPGINCGRSFYMCARPLGPSGDKE 596
Query: 606 AN----CGYFKWA 614
C F W+
Sbjct: 597 TGTEFRCKTFIWS 609
>gi|441675724|ref|XP_003276345.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Nomascus
leucogenys]
Length = 479
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 135/263 (51%), Gaps = 51/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 60 LRVVSWNINGIRRPLQGAANQEPSNCAAVAVGRILDQLDADIVCLQETKVTRDALTEPLA 119
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG +GL T
Sbjct: 120 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLSGLFATQNGD 167
Query: 111 I--MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQ 159
+ +++F+++EL +DSEGR ++T H L NVY P AD R+
Sbjct: 168 VGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLV 227
Query: 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSML 208
FK++F+ +LQ G + ++GDLN A ID DA F ++ R W S+L
Sbjct: 228 FKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLL 287
Query: 209 VESG-------GSFFDVFRSKHP 224
G G F D +R P
Sbjct: 288 SNLGCQSASQVGPFIDSYRCFQP 310
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 428 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 476
>gi|212544628|ref|XP_002152468.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
gi|210065437|gb|EEA19531.1| DNA lyase Apn2 [Talaromyces marneffei ATCC 18224]
Length = 607
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 110/345 (31%), Positives = 148/345 (42%), Gaps = 96/345 (27%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S + + +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV +
Sbjct: 16 SFNSMFNILEADIVIFQETKIQRKDLRDDMVLVPGWDCYFSLPRH----KKGYSGVVIYT 71
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDEL 123
R EV P+ AEEG TGLL + G ME L D D
Sbjct: 72 R-------NEVCAPIRAEEGITGLLCPPSTTTPYRHLPDDQQIGGYPSMEQLNDLQIDPA 124
Query: 124 LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIF 174
+ +D EGRCVI + F+LF +Y P A D R F+ F +L G+R+
Sbjct: 125 V-LDCEGRCVILEFPAFVLFGLYCPAA--RDETRDHFRQGFITLLDARIRNLVAMGKRVI 181
Query: 175 VVGDLNIAPAAID--------RCDAGPD--FAKNEFRIWFRSMLVESGGS---------- 214
V GDLNI+ ID R G + F R F + LVE
Sbjct: 182 VTGDLNISAGEIDSAHLTEAIRKGTGSEDEFVSGPVRRVF-NQLVEGAKVIGKRDSGREV 240
Query: 215 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 272
D+ RS HP+RR YTCW + A NYG RID+IL +
Sbjct: 241 PVLHDICRSFHPDRRGMYTCWETRVNARPGNYGARIDYILSS------------------ 282
Query: 273 HVNECDILIDYKRWKPGNAPRW-KGGMSTRLEGSDHAPVYMCLGE 316
+D K W W +G + L GSDH PVY E
Sbjct: 283 --------LDIKDW-------WSEGNIQEGLMGSDHCPVYAVFKE 312
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 609
W ++ + ++P C+ H+EPC+ KK G GR F++C+R GP E C
Sbjct: 538 WSKL--FTKKAMPRCEDHQEPCIMLTTKKAGINCGRSFWMCSRPLGPTGQSEKGTQWRCK 595
Query: 610 YFKWA 614
F WA
Sbjct: 596 TFIWA 600
>gi|400595545|gb|EJP63340.1| DNA lyase [Beauveria bassiana ARSEF 2860]
Length = 654
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 169/719 (23%), Positives = 274/719 (38%), Gaps = 186/719 (25%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + + D +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFGYQPWREKRTFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------ET 106
+FS + + GYSGVA + R P+ AEEG G+L +
Sbjct: 64 VYFSLP----QHKKGYSGVAIYTR-------NATCAPIRAEEGILGVLCPPKSNTPYRDL 112
Query: 107 SGSKIMEGLEDFSK-----DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
K + G S+ DE L +DSEGRCV+ + F+LF VY P + D RI+F+
Sbjct: 113 PVDKQIGGYPTLSQLRGNVDEAL-LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFR 169
Query: 162 LQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----RI 202
F L G+++ + GDLNI + +D + K NE+ R
Sbjct: 170 QSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRR 229
Query: 203 WFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
+L E +D+ R HP R +TCW + N G+RID+I
Sbjct: 230 ILNQLLFEGTVIGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYI 289
Query: 252 LCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
LC+ D FV ++ E L GSDH PVY
Sbjct: 290 LCS--------DGLKSWFVDSNIQEG------------------------LMGSDHCPVY 317
Query: 312 MCLGE--------------------------VPEIPQHSTPSLASRYLPIIRGVQQTLVS 345
+ + V Q +L+++ +P ++ +
Sbjct: 318 ATMSDKVTKDGRKIDLAEVMNPANMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIK 375
Query: 346 VLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCS 401
+ R ++ G + G P N G T D + + ++ C + + V +
Sbjct: 376 DMFSRTASQTGSQAEKIGDSPQIENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALA 434
Query: 402 SSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLK 461
+ +E R + + T +N S D KAK S GQ +L+
Sbjct: 435 PPRANT------GLERGRQTKRDSEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQ 484
Query: 462 SFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHEL 521
FF ++ V+ D S + + V + P+++ S++ PV +
Sbjct: 485 GFFKPKA-VASDTATSAGELAPADRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPI 540
Query: 522 HGVN---SSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVAR 578
S + D E K W ++ L + +P C+ H EPC++
Sbjct: 541 VAATKLFSPIKVFDPIEAKE--------------SWSKL--LGKRVVPRCE-HDEPCISL 583
Query: 579 VVKKPGPT-------------------FGRRFFVCARAEGPASNPEAN----CGYFKWA 614
V KKPG GR F++C R GP+ E + CG F W+
Sbjct: 584 VTKKPGVNCGGCLPRGGKADDSMIGNPAGRSFYICPRPLGPSGEKERDTEWRCGTFIWS 642
>gi|430813001|emb|CCJ29604.1| unnamed protein product [Pneumocystis jirovecii]
Length = 545
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 141/285 (49%), Gaps = 46/285 (16%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++V++N NG+R + S + +ADIICFQETK++R++L D++ GY
Sbjct: 1 MRLVSWNCNGIRNLFDYYPWCSEKSFEFMFKKLEADIICFQETKIQRKDLTYDMINVPGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------E 105
+F+ T K + GYSGVA + VK F + P+ AEEG TG L E
Sbjct: 61 FAFY----TFSKKKKGYSGVAIY--VKQSFCT-----PLKAEEGITGRLLHADTGVPYIE 109
Query: 106 TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF 165
+ S + G S L++D EGR ++ D F+LF VY P + D R +F+ +
Sbjct: 110 SPESVAIGGYTKISNQHALELDQEGRSIVLDLNLFVLFGVYCPL--NSDPERSKFRRAWM 167
Query: 166 HVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKN--------EFRIWFRSML 208
L GR I ++GD+N + AID A +F +N + R W +L
Sbjct: 168 ETLDHRIRNLKKMGRNIIIMGDINASRDAIDTSYALEEFQENNTNGLEDLDQRAWLNKIL 227
Query: 209 V-ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
+ G D+ R HP R+ +TCW + A N+GTRID+IL
Sbjct: 228 LPHPEGFMIDLCRHFHPNRKGMFTCWNAKINARPCNFGTRIDYIL 272
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
S PLC H++PC+ KKPG F R F++C++
Sbjct: 455 SPPLCNVHQKPCIELQSKKPGINFKRYFWICSK 487
>gi|336264660|ref|XP_003347106.1| hypothetical protein SMAC_05405 [Sordaria macrospora k-hell]
gi|380093801|emb|CCC08765.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 641
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 168/712 (23%), Positives = 278/712 (39%), Gaps = 180/712 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I T+N + + + + D+ + DI+ QETK++R++L+ D+V+ G++ +FS
Sbjct: 3 LRITTWN--------GENRTFQSMFDTLEVDIVVMQETKIQRKDLRDDMVLVPGWDVYFS 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
K + GYSGVA + R + PV AEEG TG+L S D
Sbjct: 55 LP----KYKKGYSGVAIYTR-------SSKCCPVRAEEGITGVLCPPNSSTK--FRDLPA 101
Query: 121 DELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
D+ + ++DSEGRCVI + F+L VY P + D R +F+ F
Sbjct: 102 DQQIGGYPTPGQLSSDVDEAQLDSEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAF 159
Query: 165 FHVL---------QGRRIFVVGDLNIAPAAIDRCDAG-PDFAKNEFRIW----------F 204
+ G+ +F+ GDLNI +D AG P+ K E F
Sbjct: 160 IDAMDARVRNLIAMGKEVFLCGDLNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRF 217
Query: 205 RSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
+ +V G +D+ R HP R YTCW + A NYG+RID++L
Sbjct: 218 LNQIVFGGRVIGEPDEGREKPVLWDLCREFHPRRPGMYTCWETRKNARPGNYGSRIDYVL 277
Query: 253 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
C+ FV ++ E L GSDH PVY
Sbjct: 278 CSSGI--------KDWFVDANIQEG------------------------LLGSDHCPVYA 305
Query: 313 CLGE--------VP------------------EIPQHSTPSLASRYLPIIRGVQQTLVSV 346
+ + +P E Q ++++ +P +Q++ +
Sbjct: 306 TISDTVTRDGITIPITDLMNPEGMFKDGQRQREWSQKDCLPISAKLIPEF-DRRQSIKDM 364
Query: 347 LMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQE 406
K+ K + P + + D +D + + S + LQ S+ + +
Sbjct: 365 FFKK---------KTPSTTPKSATAAADGQDTIDPTNTSSTTANATNALQEAASSAPSLK 415
Query: 407 SEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKS---- 462
+ + T E ++ S I + + +P R KKAK + Q S KS
Sbjct: 416 TSLSQSTTTEPA-----LSRTSPIPKRRAEQPAP--AARPSKKAKATLSKQPSSKSVPGP 468
Query: 463 -------FFHKR---SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPE------SHHHS 506
FF + +V ++ + D + ++ DT+ PE S +
Sbjct: 469 SQSTLMGFFKPKIPTPSVKAEERPATADVNNYSPETIADTTTGDRLFPEKAGQPSSSFQT 528
Query: 507 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 566
+ I D + + DE +GK F D +N + W ++ L + +P
Sbjct: 529 DDIEDWDEDAVASKTSPTTHKTTTAAMDE-EGKVF-DPIQNKES---WSKL--LGKRVVP 581
Query: 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
C+ H + C++ V KKPG GR F++CAR GP+ + E C F W+
Sbjct: 582 KCE-HGDDCMSLVTKKPGINCGRSFYMCARPLGPSGDKETGTEFRCKMFIWS 632
>gi|402222945|gb|EJU03010.1| DNase I-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 173/403 (42%), Gaps = 100/403 (24%)
Query: 1 MKIVTYNVNGLRQR-----VSQFGSLRKLLDSFD--ADIICFQETKLRRQELKSDLVMAD 53
M+I+T+NVNG+R SQ +L +L D +DI CFQE K+ R ++ D +
Sbjct: 1 MRILTWNVNGIRTLPQYYPWSQLKTLEAILAHPDIRSDIYCFQEMKIMRPQIDRDKALPG 60
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-------- 105
Y+SF S G+ GYSGVA + + A P+ AEEG +GL++
Sbjct: 61 SYDSFISLP----TGKGGYSGVAIYV-------DSNKAKPIKAEEGLSGLIQPNPPLSEE 109
Query: 106 --TSGSKIMEGLEDFSKDE-------LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
S + L DF DE LL++D+EGR +I D G F+L NVY P +D
Sbjct: 110 DRVSSTYPAGHLMDFIPDEDDRLPSGLLELDNEGRALILDLGLFVLINVYCPADTVKD-- 167
Query: 157 RIQFKLQFFHVLQGR---------RIFVVGDLNIAPAAIDRCDAGPDFAKNEFR----IW 203
R +K F +LQ R + +VGDLN+ + +D + P+ K + W
Sbjct: 168 RFSYKFNFHRLLQERVRLLQEENCEVIIVGDLNMCASRMDDGEPVPESKKRNWNEEPWDW 227
Query: 204 FRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
+ V+ G DV R HP+R + YT W S N+G R+D+ILC
Sbjct: 228 LKKW-VQPNGRLVDVTRRFHPDRTKMYTFWESKKDGRTANFGLRLDYILCTE-------- 278
Query: 264 LQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYM---------- 312
G P KG + ++ GSDH PVY+
Sbjct: 279 -------------------------GLLPWLKGSDILPQVLGSDHCPVYVDLHDEIILED 313
Query: 313 ----CL-GEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKR 350
CL E+ + P A+R+ P + G Q + S + +
Sbjct: 314 GTKKCLRDEMKQTEITPWPRFATRFWPELSGKQTKISSFFVTK 356
>gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 162/659 (24%), Positives = 261/659 (39%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R YTCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMYTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|378734461|gb|EHY60920.1| AP endonuclease 2 [Exophiala dermatitidis NIH/UT8656]
Length = 635
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/364 (30%), Positives = 160/364 (43%), Gaps = 95/364 (26%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R Q + + D+ +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 IRITTWNVNGIRNPFGYQPWRDKKTFAGMFDTLEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK----- 110
++++S K + GYSGV + R P+ AEEG TG+L S
Sbjct: 63 DNYWSLP----KHKKGYSGVVIYTR-------NATCAPIRAEEGITGILTPPNSSTAFRD 111
Query: 111 --IMEGLEDFSKDELLKI--------DSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ E + + + L I DSEGRCVI + F+L Y P D R F
Sbjct: 112 LPVEEQIGGYPSIQQLPISDYDPASLDSEGRCVILEFPAFVLIGTYCPA--ERDETRTHF 169
Query: 161 KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----R 205
+ F +VL G+R+ VGD+NI+ ID A K+ W R
Sbjct: 170 RTSFLNVLDARIRNLVKMGKRVVWVGDMNISREEIDTAAAEESMRKHGIDAAEWISTPAR 229
Query: 206 SMLVE--SGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
ML + GG +DV R+ H RR YTCW + A NYG+RID+
Sbjct: 230 RMLNQLLVGGKVRGERDEGRETAIMWDVCRAFHEGRRGMYTCWETKVNARPGNYGSRIDY 289
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
I+C+ HD++ D+ W N + L GSDH PV
Sbjct: 290 IICS-------HDMR----------------DW--WSDAN-------IQEGLLGSDHCPV 317
Query: 311 YMCL 314
Y L
Sbjct: 318 YAVL 321
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
P C+ H EPC V KKPG GR F++C R GP+ E C F WA
Sbjct: 573 PKCE-HDEPCKIMVTKKPGVNCGRSFWMCNRPLGPSGKQEKGTQWRCNTFIWA 624
>gi|19112314|ref|NP_595522.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe 972h-]
gi|48427993|sp|P87175.1|APN2_SCHPO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|2117306|emb|CAB09119.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe]
gi|40287246|gb|AAR83752.1| AP-endonuclease-like protein [Schizosaccharomyces pombe]
Length = 523
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 159/349 (45%), Gaps = 78/349 (22%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++NVNG++ + F S +++ AD+IC QE K+++ + +G+
Sbjct: 1 MRILSWNVNGIQNPFNYFPWNKKNSYKEIFQELQADVICVQELKMQKDSFPQQYAVVEGF 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM--- 112
+S+F T K R GYSGV + + +VA+PV AEEG TG+L G K
Sbjct: 61 DSYF----TFPKIRKGYSGVGFYVK-------KDVAIPVKAEEGITGILPVRGQKYSYSE 109
Query: 113 ----EGLEDFSKDELLK----IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
E + F KD K IDSEGRC++ D FIL VY P E+ R++++ F
Sbjct: 110 APEHEKIGFFPKDIDRKTANWIDSEGRCILLDFQMFILIGVYCPVNSGEN--RLEYRRAF 167
Query: 165 FHVLQ----------GRRIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSML 208
+ L+ R+I +VGD+NI ID D ++ E R W R +L
Sbjct: 168 YKALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLL 227
Query: 209 VESGGSFF-DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+ S D+ R +HP R+ +TCW + NYGTRID+ L L
Sbjct: 228 LPSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYGTRIDYTLATPDLLP-------- 279
Query: 268 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
V + DI+ + + GSDH PVY+ L E
Sbjct: 280 -----WVQDADIMAE-------------------VMGSDHCPVYLDLKE 304
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 599
W++I E + PLC+GHKEPC V+KPG +GR+F++CAR G
Sbjct: 446 WKQI--FSERAPPLCEGHKEPCKYLTVRKPGINYGRKFWICARPVG 489
>gi|58271540|ref|XP_572926.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134115276|ref|XP_773936.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256564|gb|EAL19289.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229185|gb|AAW45619.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 654
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 161/356 (45%), Gaps = 88/356 (24%)
Query: 11 LRQRVSQFGSLRK-----LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTS 65
L + + +F S++K LLD DA I CFQE K R L+ + Y+ F++ R+
Sbjct: 19 LTRSIYRFSSMKKKNIEGLLDELDAQIFCFQEHKTVRTRLEKSMACPGPYDGFWTFPRS- 77
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-----------ETSGSKI--- 111
+TGYSGV T+ + +P+ AEEG TGLL T +I
Sbjct: 78 ---KTGYSGVCTYV-------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDAERIGSY 127
Query: 112 -----MEGLE--DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
ME ++ D +K ++ K+D EGR V+ D G F+LFN+Y P + ++ R +K+ +
Sbjct: 128 PDVNDMEWMDELDGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNSARRPYKMNY 185
Query: 165 FHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE--- 210
H LQ GR + +VGD+NI +D + GP A+ + R +L +
Sbjct: 186 LHALQERVQLLQAAGREVMLVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCA 244
Query: 211 SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
G DV R P+R + +TCW A NYG+RID++LC
Sbjct: 245 PKGPMIDVVRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT---------------- 288
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGEVPEIPQHST 325
PG P KGG + ++ GSDH PVY+ L E P+ T
Sbjct: 289 -----------------PGLRPWIKGGDILPKVYGSDHCPVYVDLHESIVTPEGET 327
>gi|327306001|ref|XP_003237692.1| DNA lyase [Trichophyton rubrum CBS 118892]
gi|326460690|gb|EGD86143.1| DNA lyase [Trichophyton rubrum CBS 118892]
Length = 603
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/370 (29%), Positives = 168/370 (45%), Gaps = 102/370 (27%)
Query: 1 MKIVTYNVNGLRQRVS--------QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
+++ T+NVNG+R S FG++ D +ADI+ FQE K++R++L+ D+V+
Sbjct: 3 LRLTTWNVNGIRNPFSYEPWRGNRTFGTM---FDILEADIVVFQEAKIQRKDLQDDMVLV 59
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-------- 104
G++ +FS R + GYSGV + R SS A + AEEG TG L
Sbjct: 60 SGWDCYFSLPRQ----KKGYSGVVIYTR-----SSKCSA--IRAEEGVTGALCPPSSKTP 108
Query: 105 --------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ G +E +E+ S+ + + +DSEGRC+I + F+L VY P AD ++T
Sbjct: 109 FRQLSASEQIGGYPSIEQMEELSEVDPIIVDSEGRCLILEFPAFVLIGVYCP-ADRDET- 166
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA----------GPDFAK 197
R F+L FF++L+ G+R+ + GDLN ID A ++
Sbjct: 167 RDDFRLGFFNLLEVRVRNLVKMGKRVILAGDLNTCAGPIDSAPALERIRKGTETEEEYLS 226
Query: 198 NEFRIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 246
R+ F ++ G + D+ R HP R YTCW A NYG+
Sbjct: 227 YPARLIFNRLVRPVGSTADTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNARPGNYGS 286
Query: 247 RIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306
RID+ILC+ +++S FV ++ E L GSD
Sbjct: 287 RIDYILCS-------DNIRSW-FVESNIQEG------------------------LMGSD 314
Query: 307 HAPVYMCLGE 316
H PVY + +
Sbjct: 315 HCPVYASISD 324
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 609
W ++ +P C+GH E C++ V KKPG GR F++C R GP+ + E+ C
Sbjct: 535 WSKV--FTRKPVPKCEGHHEDCISLVTKKPGINCGRSFWICPRPLGPSGDKESGTPWRCP 592
Query: 610 YFKWA 614
F W+
Sbjct: 593 TFIWS 597
>gi|148675568|gb|EDL07515.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_c [Mus musculus]
Length = 543
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 103/336 (30%), Positives = 155/336 (46%), Gaps = 73/336 (21%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L L + +GY S + + R+GYSGVATFC+ + A PVAAEEG +G+
Sbjct: 82 LTEPLAIVEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVF 129
Query: 105 ETSGSKI--MEGLEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSE 153
T I +++F+++EL +DSEGR ++T H L NVY P AD
Sbjct: 130 ATLNGDIGCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPG 189
Query: 154 DTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRI 202
R+ FK++F+ +LQ G + ++GDLN A ID CDA F ++ R
Sbjct: 190 KPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRK 249
Query: 203 WFRSMLVESG-------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
W +L G G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 250 WMDGLLSNPGDEAGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--- 306
Query: 256 PCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG 315
+ ++ID + + + GSDH PV L
Sbjct: 307 -------------------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVL- 337
Query: 316 EVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKRE 351
V +P P+L +R+LP G Q ++ L+ E
Sbjct: 338 NVSCVPAKQCPALCTRFLPEFAGTQLKILRFLVPLE 373
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 441 FHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVP 500
H R RK + Q +L S+F S++S + L V T + +
Sbjct: 400 MHSTRLRKSQGGPKRKQKNLMSYFQPSSSLSQTSGVELPTLPL-VGPLTTPKTAEEVATA 458
Query: 501 ESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQL 560
NK+P + ++KG+R W+ +
Sbjct: 459 TMLEEKNKVP---------------------ESKDEKGER----------TAFWKSMLS- 486
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 487 GPSPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 540
>gi|302761446|ref|XP_002964145.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
gi|300167874|gb|EFJ34478.1| hypothetical protein SELMODRAFT_405855 [Selaginella moellendorffii]
Length = 589
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 84/132 (63%), Gaps = 7/132 (5%)
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+GRRI +VG LNI+P ID CD GP F + R WFRS+LV GG+F D FR HPE E
Sbjct: 272 RGRRIIIVGHLNISPYPIDSCDPGPKFDTDPSRQWFRSLLVSEGGAFSDSFRVFHPEIAE 331
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL-HQKHDLQSH------NFVTCHVNECDILI 281
AYTCW +GAE+FNYG+RIDH+L AGPC H + SH F C + CDIL+
Sbjct: 332 AYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQCPDGSHENSSCDGFAECGTDMCDILL 391
Query: 282 DYKRWKPGNAPR 293
++KR K PR
Sbjct: 392 EFKRAKLDTLPR 403
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
W R++ LM ++ CKGH E CV R VKK GP GR F+VC RA+GPAS
Sbjct: 535 WERLKSLMSRNLLSCKGHGETCVVRTVKKAGPNLGRGFYVCTRAKGPAST 584
>gi|62085788|gb|AAX63285.1| DNA lyase [Beauveria bassiana]
gi|62085830|gb|AAX63306.1| DNA lyase [Beauveria bassiana]
gi|62085840|gb|AAX63311.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 161/659 (24%), Positives = 261/659 (39%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085874|gb|AAX63328.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 162/659 (24%), Positives = 261/659 (39%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGS----------KIMEGLEDFSK-----DELL 124
R P+ AEEG G+L S K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRHLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
Length = 580
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 152/655 (23%), Positives = 251/655 (38%), Gaps = 149/655 (22%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVIL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 214
GDLNI + +D + K + W +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGILMDEWQSMPTRRILNQLLFEGSVIGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G +
Sbjct: 315 NMFQDGRRVRSWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGGDVLQ 372
Query: 369 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHS 428
+ G T D + ++ R ++ + V + + G +E R +
Sbjct: 373 IENRGTTSDTAASLSRKMSGAGGTACANNVGAAVALAPPRG--NTGLERGRQTKRDGEQP 430
Query: 429 TITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNS 488
T G +N S D A+ KA GQ +L+ FF + V+ D S +
Sbjct: 431 TELGGPANKKSKSSSD-AKVKASN---GQRTLQGFFKPKV-VASDTATSAGGLAPADRKQ 485
Query: 489 VTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFLDKE 545
V + + P+++ S++ P+ + S V D E K
Sbjct: 486 V---PVRERTPPQANGGSSQAPIPSPKTPTEPIVAATKLFSPVKVFDPIEAKE------- 535
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H E C++ V KKPG GR F++C R GP
Sbjct: 536 -------SWSKL--LGKRVVPRCE-HDESCISLVTKKPGVNCGRSFYICPRPLGP 580
>gi|340519815|gb|EGR50053.1| DNA lyase [Trichoderma reesei QM6a]
Length = 567
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 159/647 (24%), Positives = 248/647 (38%), Gaps = 153/647 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L D+V+ G++ +FS R + GYSGVA +
Sbjct: 14 TFQAMFDLLEADIVVLQETKIQRKDLTDDMVLVPGWDVYFSLPRH----KKGYSGVAIYT 69
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL-ETSGSKIMEGLEDFSK--------------DELL 124
R P+ AEEG G+L + L D + DELL
Sbjct: 70 R-------NATCAPIRAEEGILGVLCPPKSTTQFRNLPDDQRIGGYPRPEQLSGNIDELL 122
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFV 175
+DSEGRCVI + F+L VY P + D R++F+++F L +G+ + +
Sbjct: 123 -LDSEGRCVILEFPAFVLLGVYSPA--NRDESRVEFRMEFLQALDARVRNLVAEGKEVIL 179
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--WF----RSML--VESGGS------------- 214
GDLN++ A D + + K + W R + + GG+
Sbjct: 180 AGDLNVSRAEADSTNIVENLRKEGLSMEEWMNLPSRRLFNHLVFGGTVQGERDVGREQPV 239
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R TCW + N G+RID++LC+ H L+ F ++
Sbjct: 240 LWDLCREFHPAREGMNTCWDTKRNTRPANNGSRIDYVLCS-------HGLRDW-FTEANI 291
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLP 334
E L GSDH PV+ L +V +T + L
Sbjct: 292 QEG------------------------LMGSDHCPVFATLADV-----VTTGNEKVSLLH 322
Query: 335 IIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGI 394
++ V RE + S L E + D +G+
Sbjct: 323 LVNPVGMFDRDGRRLREWHPK-DVLPLSAKLIPEFDRRQSIRDMFTK---------KAGV 372
Query: 395 LQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQ 454
Y SS GE T E DSA + T+ S + AR A+ +
Sbjct: 373 RPSSYSSSLGA---GEPTPEGEPAGDSARSEQLESKTKTSHAADHGLGLSDARHSARSNP 429
Query: 455 L---GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV 511
L GQ +L+ FF +S + + T T+ + P
Sbjct: 430 LLAQGQTTLQGFFQP---------SSAKRVTKGRDGDATTTASANTSAP----------- 469
Query: 512 TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGH 571
+SC ++ + D L KE W ++ L + +P C+ H
Sbjct: 470 --FSC-----EQTTAAAAALPSDRLVFDPILAKE-------SWSKL--LGKRKLPRCE-H 512
Query: 572 KEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
EPC++ V K+PG G F++CAR GP+ E CG F W+
Sbjct: 513 NEPCISLVTKRPGVNCGMSFYICARPLGPSGEKERGSEWRCGTFIWS 559
>gi|388579621|gb|EIM19943.1| DNase I-like protein [Wallemia sebi CBS 633.66]
Length = 510
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 57/293 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++N+NG+R+ + + S + + +ADI+CFQETK + L + V D ++S++S
Sbjct: 1 MRVLSWNINGIRRILGNYKSCEEFVRGLEADIVCFQETKAFKSALGASQVSFDTFQSYWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTG-----------LLETSGS 109
++ YSGV + + P+A EEG +G L +
Sbjct: 61 FCHSN----RSYSGVCVYSK----------ETPLAVEEGLSGGYTTFSVSIPQLSDEDKL 106
Query: 110 KIMEGLEDFSKDELL------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
K + + ++++ LL ++D+EGR + D+G F+L NVY P E R
Sbjct: 107 KPLANIHSYNQETLLGQNYHPDFTNVKQLDTEGRALCLDYGMFVLINVYCPAEGDES--R 164
Query: 158 IQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA----GPDFAKNEF---- 200
++FK F +L GR+I ++GD+NIA AID CD D K EF
Sbjct: 165 VKFKKSFHELLFERIRILKEGGRQIILLGDINIAHRAIDHCDGLELTRTDIGKMEFETKY 224
Query: 201 -RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
R W ++ + D+ R HP R +TCW A NYGTRID++L
Sbjct: 225 TRQWMDKLVSDDNSPLVDIMRLFHPTREGMFTCWNQLINARPSNYGTRIDYVL 277
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN------ 607
W+ + + +P CK H E C V KPGP G++F++C+R GP + +
Sbjct: 422 WKAL--MAPKRVPKCKVHNEDCREYTVNKPGPNKGKKFWLCSRNVGPGYDAGGSKRNRAD 479
Query: 608 ------CGYFKWA 614
C +F W+
Sbjct: 480 VDSRYRCNFFVWS 492
>gi|391868669|gb|EIT77879.1| apyrimidinic endonuclease [Aspergillus oryzae 3.042]
Length = 627
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 142/305 (46%), Gaps = 65/305 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R + + + + +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 FRITTWNVNGIRNPFAYEPWRGKRTFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ FS R+ + GYSGV + R P+ AEEG TG+L
Sbjct: 63 DCHFSLPRS----KKGYSGVVIYTR-------NATCAPLRAEEGLTGVLCPPNSSVPFRD 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVR 157
+ G E L D +DSEGRCVI + F+L +Y P R +S D+ R
Sbjct: 112 LPLDRQIGGYPTTEQLSTLELDAA-TLDSEGRCVILEFPAFVLLGLYCPANRDESRDSFR 170
Query: 158 IQFKLQFFH------VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAK-----NEF-----R 201
F L V G+R+FV GDLNI+ ID A K +EF R
Sbjct: 171 QGF-LDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHASEAIRKGTTTEDEFISAPAR 229
Query: 202 IWFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
F + LV SG + FD+ RS HP RR YTCW A NYG+RID
Sbjct: 230 RLF-NQLVYSGKVIGERDEGREQPALFDICRSFHPNRRGMYTCWEQKINARPGNYGSRID 288
Query: 250 HILCA 254
++LC+
Sbjct: 289 YVLCS 293
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 553 EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 608
+W ++ + +P C+GH+EPC++ KKPG GR F++C R GP+ N E C
Sbjct: 559 DWSKL--FTKKPVPKCEGHQEPCISLSTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRC 616
Query: 609 GYFKWA 614
F WA
Sbjct: 617 PTFIWA 622
>gi|452987163|gb|EME86919.1| hypothetical protein MYCFIDRAFT_194837 [Pseudocercospora fijiensis
CIRAD86]
Length = 622
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 153/668 (22%), Positives = 256/668 (38%), Gaps = 139/668 (20%)
Query: 7 NVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
NVNG+R S + + D ++DI+ QE K++R++L+ D+V+ DG++ +FS
Sbjct: 4 NVNGIRNPFSYPPWNVSRTFSAMFDILESDIVVMQELKIQRKDLRDDMVLVDGWDCYFSL 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------------- 108
K + GYSGV + R P+ AEEG G+L ++
Sbjct: 64 P----KHKKGYSGVGIYTR-------NATCAPIRAEEGVLGVLPSANGTPYRDLPDEDSI 112
Query: 109 -----SKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADS--EDTVRIQFK 161
S M + + ++ +D+EGRCV+ + F+LF VY P + D R F
Sbjct: 113 GGYLTSVQMADIAEIGGEDPAGLDAEGRCVVVEFPAFVLFGVYSPANSNGLRDGFRHGFV 172
Query: 162 LQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFRIW 203
H ++ G+ + +VGDLN+ I D+GP DF R
Sbjct: 173 CALDHRIRNLIKAGKNVILVGDLNVTRHEI---DSGPTLEEMRKGLITHEDFISGPNRRI 229
Query: 204 FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
F L++ G F+D R HP+R+ YT W + A N+G+RID +L
Sbjct: 230 FNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDFVL 289
Query: 253 C--AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
A + ++Q + H C + ID++ N G L+ + V
Sbjct: 290 VSEALRSWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPPAV 341
Query: 311 YMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESN 370
++ E STP +++ +P ++T+ S+ + K + P
Sbjct: 342 FVGGERKQEWTIASTPGFSAKRMPEFD-KRRTIKSMFAAPALKKSQQ--------PTPPG 392
Query: 371 STGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTI 430
S +D V E+EG + + I
Sbjct: 393 SVAQADDSQPAV-----------------------ETEG------------STAPAKRKI 417
Query: 431 TQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVT 490
+ ++ PF ++ K ++ GQ SLK FF +S + ++
Sbjct: 418 SVSTTPKEYPFKKQKSDIKTAPTK-GQQSLKGFFQAKS----------VPITAAAQSAEK 466
Query: 491 DTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVA 550
D E+ + ++ + + S + ++S + D D K +
Sbjct: 467 DLKNETEDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSPRKFASKLASAEKS 526
Query: 551 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--- 607
+W + PLC+GH EPC + KK G GR F++CAR GP+ E
Sbjct: 527 QHQWGAL--FSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEKERGTQW 584
Query: 608 -CGYFKWA 614
CG F W+
Sbjct: 585 RCGTFIWS 592
>gi|62085786|gb|AAX63284.1| DNA lyase [Beauveria bassiana]
gi|62085844|gb|AAX63313.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S + D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPIKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085890|gb|AAX63336.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDLRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085798|gb|AAX63290.1| DNA lyase [Beauveria bassiana]
gi|62085850|gb|AAX63316.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 160/659 (24%), Positives = 260/659 (39%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D R +F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRFEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVP-ESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V ++E P +++ S++ PV + S D E K
Sbjct: 482 RKQVP----ARERTPLQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085852|gb|AAX63317.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085854|gb|AAX63318.1| DNA lyase [Beauveria bassiana]
gi|62085856|gb|AAX63319.1| DNA lyase [Beauveria bassiana]
gi|62085858|gb|AAX63320.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085860|gb|AAX63321.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085862|gb|AAX63322.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085864|gb|AAX63323.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085866|gb|AAX63324.1| DNA lyase [Beauveria bassiana]
gi|62085868|gb|AAX63325.1| DNA lyase [Beauveria bassiana]
gi|62085870|gb|AAX63326.1| DNA lyase [Beauveria bassiana]
gi|62085872|gb|AAX63327.1| DNA lyase [Beauveria bassiana]
gi|62085876|gb|AAX63329.1| DNA lyase [Beauveria bassiana]
gi|62085878|gb|AAX63330.1| DNA lyase [Beauveria bassiana]
gi|62085880|gb|AAX63331.1| DNA lyase [Beauveria bassiana]
gi|62085882|gb|AAX63332.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085822|gb|AAX63302.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 159/658 (24%), Positives = 259/658 (39%), Gaps = 156/658 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFL 542
V + + +++ S++ PV + S D E K
Sbjct: 482 RKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE---- 534
Query: 543 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 ----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085808|gb|AAX63295.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 159/658 (24%), Positives = 259/658 (39%), Gaps = 156/658 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEFR-IWFRSMLVES--GGSFF----------- 216
GDLNI + +D + K NE++ + R +L + GG+ F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFGGTVFGDRDDDRERAV 226
Query: 217 --DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNS--TGDTEDCS-ENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVA 425
N T DT S + R+ C + + V + + +E R + +
Sbjct: 373 ENRGVTSDTAASSGTTMSRAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRDS 426
Query: 426 SHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNV 485
T + +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 427 EQPTESGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPAD 481
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRFL 542
V + + +++ S++ PV + S D E K
Sbjct: 482 RKQV---PARERTLLQANGVSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE---- 534
Query: 543 DKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 ----------SWSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|297735010|emb|CBI17372.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 70/78 (89%)
Query: 544 KERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASN 603
+++N++AL+EW+RIQQLM+ SIPLCKGH EPCV+R+ KKPGP GRRF+VCARAEGPASN
Sbjct: 34 RDKNDIALVEWQRIQQLMQNSIPLCKGHGEPCVSRLAKKPGPNHGRRFYVCARAEGPASN 93
Query: 604 PEANCGYFKWAFSKSKQK 621
PE NCGYFKWA SKS+ +
Sbjct: 94 PETNCGYFKWAASKSRHR 111
>gi|449548040|gb|EMD39007.1| hypothetical protein CERSUDRAFT_47445 [Ceriporiopsis subvermispora
B]
Length = 537
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/419 (27%), Positives = 179/419 (42%), Gaps = 108/419 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+++N+NG+R + F S +LD ADIICFQE K R + D+ + Y
Sbjct: 1 MRILSWNINGVRTLPQYHPWNTFKSFEGILDEVGADIICFQEMKSSRAAILRDVALPGPY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE-----TSGSK 110
SFFS + GYSGVA ++ + +P+ AEEG G+L+ TS +
Sbjct: 61 HSFFSFPVR----KGGYSGVAV-------YTDSRKVVPLKAEEGLAGILQPKPPLTSEER 109
Query: 111 I-------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR 157
+ ++G D +DSEGR V+ D G F+L NVY P + D R
Sbjct: 110 VSPSYPRAHEIDAYVDGHGDLPS-TFDALDSEGRAVVVDFGLFVLINVYCP--NETDETR 166
Query: 158 IQFKLQFFHVLQG----------RRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRI 202
FK+ + +LQ R + V+GD+NI I+ + F ++ R+
Sbjct: 167 TSFKMNYHLMLQERVRKLIEEERREVIVLGDVNICANPIEHAEGNQPSFLAAFYEHPARL 226
Query: 203 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-K 261
WF+ L + G D+ R P+R+ +TCW A + NYG+R+D+IL L K
Sbjct: 227 WFKQWL-DPVGPMVDIVRHFWPDRKGMFTCWNMKIMARESNYGSRVDYILVTKGLLPWIK 285
Query: 262 HDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL------- 314
H G ++GSDH P+Y+ L
Sbjct: 286 H---------------------------------GDTQPSIKGSDHCPLYIDLHEEITSE 312
Query: 315 -GEVPEIP--------QHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGS 364
GEV ++ + P +A+++ G +QT++S KQG K S S
Sbjct: 313 TGEVMKLRDAMKQDDLRREPPRIAAKFWEEYSG-KQTVLSAFF----GKQGDKAKISPS 366
>gi|401883940|gb|EJT48120.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 2479]
gi|406696085|gb|EKC99381.1| DNA-(apurinic or apyrimidinic site) lyase [Trichosporon asahii var.
asahii CBS 8904]
Length = 635
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 154/336 (45%), Gaps = 74/336 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK----LLDSFDADIICFQ-----------ETKLRRQEL 45
M+I+T+NVN LR + +K LLD+ +AD+ CFQ E K RR+ L
Sbjct: 1 MRILTWNVNVLRTVLDYHPMPKKNVEGLLDTLEADVFCFQGQVSFLTPLTSEHKTRRELL 60
Query: 46 KSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLE 105
Y+ F++ R ++GYSGV T+ +++ +P+ AEEG TGLL
Sbjct: 61 DKATACPGRYDGFWTFPRH----KSGYSGVCTYV-------NSDYCVPLKAEEGITGLLL 109
Query: 106 TSGSKIMEGLEDFSKDELL-----------------------KIDSEGRCVITDHGHFIL 142
TS M+ ++ DE + ++D EGR V+ D G F+L
Sbjct: 110 TSKGGTMK--PPWTPDEQIGCYPELDDVPLLEETEGIPFDPARLDVEGRAVVCDFGLFVL 167
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-- 191
FN+Y P SE R +KL F VL+ GR + + GD+N+ ID +
Sbjct: 168 FNLYVPNRGSE--ARGPYKLNFLTVLRARVEALMAAGREVILAGDMNVIRQPIDFGEGTI 225
Query: 192 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
G + + R+ F S G DV R P+R YTCW + A NYG+RID
Sbjct: 226 VPGTHYLDHPDRLLFESW-CHPKGPLIDVVRESFPDREGMYTCWNTKIDARPANYGSRID 284
Query: 250 HILCAGPCLH---QKHDLQSHNFVTCHVNECDILID 282
+ILC P L + D+QS F + H C + ID
Sbjct: 285 YILCT-PGLRKWIKGGDIQSKVFGSDH---CPVYID 316
>gi|62085790|gb|AAX63286.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 256/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGVLGVLCPPKSNMPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVIGDRDDDRECAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI---- 320
E L GSDH PVY + ++ E+
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 321 ------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + +P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085886|gb|AAX63334.1| DNA lyase [Beauveria bassiana]
gi|62085888|gb|AAX63335.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 IESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|345565933|gb|EGX48880.1| hypothetical protein AOL_s00079g101 [Arthrobotrys oligospora ATCC
24927]
Length = 569
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 179/392 (45%), Gaps = 68/392 (17%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +AD++CFQE K++ ++L+ D+V+ G++S+F T K + GYSGVA + R +S
Sbjct: 1 MFDILEADVVCFQELKIQSKDLRDDMVLIPGWDSYF----TFPKHKKGYSGVAIYTR-QS 55
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK------------IDSEGR 131
S P+ AEEG TG L +G+ D +D+ + +DSEGR
Sbjct: 56 KIS------PIKAEEGITGHLLPTGATRNTSYRDLPEDQQIGGYPTIDKEDGVVLDSEGR 109
Query: 132 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIA 182
++ D G F+L Y P ED+ R F++ + L G+R+ VGD+NIA
Sbjct: 110 GLVVDFGLFVLIGTYCP-VGREDSARQDFRMAWLKALDERIRNLTKMGKRVVTVGDINIA 168
Query: 183 PAAIDRCDA-------GPDFAKNEFRIW--------FRSMLVESGGS-FFDVFRSKHPER 226
P ID DA GPD +E W RS+ S + DV R P+R
Sbjct: 169 PEPIDSADAWEMQKRLGPD--SSEMLEWNETPAKKLLRSLCEPSEEAVMVDVVRQFFPDR 226
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPC--LHQKHDLQS--HNFVTCHVNECDILID 282
YT W + A NYG+RID+++ + + D+Q+ H C V
Sbjct: 227 VAMYTHWETKINARPGNYGSRIDYVVASSSMKDWFESADIQNGLHGSDHCPV-------- 278
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQT 342
Y KP G L+ + A V++ E+P P +++R +P RG +++
Sbjct: 279 YAVLKPEI--ELDGEKRVLLDLVNPAGVFVGGERKQELP--PPPKMSARLIPHFRG-RRS 333
Query: 343 LVSVLMKREVAKQGKSCKFSGSLPAESNSTGD 374
+ + ++ VAK S PAE + D
Sbjct: 334 IKDMFQRKTVAKVVSIAGSSTQEPAEPSGEND 365
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA--------SNPE 605
W ++ + S PLC GH EP +KPG GR F++CAR GP+ SN E
Sbjct: 502 WNKL--FAKPSAPLCDGHSEPAKKMQTRKPGLNNGRWFWMCARPVGPSGPKERSRRSNDE 559
Query: 606 ANCGYFKW 613
C YFKW
Sbjct: 560 WRCDYFKW 567
>gi|62085834|gb|AAX63308.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 253/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|213405473|ref|XP_002173508.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
gi|212001555|gb|EEB07215.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
Length = 554
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 59/323 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG------SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
M+I+T+NVNG+ Q +G S +++ ++ DADIIC QE K ++Q + +G
Sbjct: 1 MRILTWNVNGI-QNPFNYGQWRSKKSYKEVFETLDADIICVQELKAQKQGFPEQFALIEG 59
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
Y+++F T + GYSGV + + + +P AEEG TG+L
Sbjct: 60 YDAYF----TFPLEKKGYSGVGVYVK-------KSLTVPCKAEEGITGILPVPDRHYC-- 106
Query: 115 LEDFSKDELLK-------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
+D +DE + IDSEGRC++ D F+L VY P E R++F+
Sbjct: 107 YKDAPEDEQIGYYPVNLDKATERLIDSEGRCILLDFQLFVLIGVYCPVNSGEK--RLKFR 164
Query: 162 LQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDAGPDFAKNEF-------RIWF 204
F++ L+ R + ++GD+NI +D D D K +F R W
Sbjct: 165 RLFYNALRDRIIRLTQEAKRNVILLGDINILRDELDTAD-NKDIQKEQFDESIRESREWV 223
Query: 205 RSML-VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
R ML G D R +HP RR +TCW + N+GTRID+I C P L
Sbjct: 224 RGMLQPHPEGLLIDTTRHRHPVRRGMFTCWNTRLNTRPTNFGTRIDYI-CISPALLPW-- 280
Query: 264 LQSHNFV--TCHVNECDILIDYK 284
+Q N + + C + +D+K
Sbjct: 281 MQDANIMPEIMGSDHCPVFLDFK 303
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 33/186 (17%)
Query: 439 SPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 498
+P ++ KK+K L + LK+ + D N++ TS + +QEE
Sbjct: 380 TPQTTEKVTKKSKNQTLLSMFLKTPKEASARKDSSDKNALLRTS---------SEHTQEE 430
Query: 499 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS---HDQDEKKGKRFLDKERNNVALLEWR 555
V + + E + V+ S S + ++E+ L +N +L +R
Sbjct: 431 VSTENFQDEE-----------ESYAVSQSTFSSSTYTENEQVKCSTLSSNVDNESLRLFR 479
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR-----AEGPASNPEAN--- 607
+ + +PLC GH EPC VKKPG +GR+F+ C+R E ++ E N
Sbjct: 480 KA--FSKPRVPLCTGHMEPCKKLDVKKPGVNYGRKFWCCSRPVGEVVENSSATNEKNPYQ 537
Query: 608 CGYFKW 613
C +F W
Sbjct: 538 CRFFLW 543
>gi|62085794|gb|AAX63288.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 156/659 (23%), Positives = 253/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQSRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDNDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085838|gb|AAX63310.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (347), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 251/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ S +S T
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKAVAS----DSATSAGEL 477
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
+ P+++ S++ PV + S D E K
Sbjct: 478 APADRKQLPTRERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085806|gb|AAX63294.1| DNA lyase [Beauveria bassiana]
gi|62085816|gb|AAX63299.1| DNA lyase [Beauveria bassiana]
gi|62085818|gb|AAX63300.1| DNA lyase [Beauveria bassiana]
gi|62085828|gb|AAX63305.1| DNA lyase [Beauveria bassiana]
gi|62085832|gb|AAX63307.1| DNA lyase [Beauveria bassiana]
gi|62085842|gb|AAX63312.1| DNA lyase [Beauveria bassiana]
gi|62085848|gb|AAX63315.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D A+ KA GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD-AKVKASN---GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DREQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|396469847|ref|XP_003838506.1| similar to DNA lyase [Leptosphaeria maculans JN3]
gi|312215074|emb|CBX95027.1| similar to DNA lyase [Leptosphaeria maculans JN3]
Length = 650
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 162/734 (22%), Positives = 260/734 (35%), Gaps = 211/734 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D ADI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGIR---NPFGYKPWSTNRTFNAMFDILQADIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGR------------------TGYSGVATFCRVKSPFSSTEVALPV 94
G++ +FS + KGR GYSGV + R V P+
Sbjct: 59 PGFDCYFSLPK-HKKGRYYSLGQSWTAHRHHVLIGVGYSGVGIYTR-------QSVCAPI 110
Query: 95 AAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138
AEEG G+L G + D + +D+EGRC++ +
Sbjct: 111 RAEEGLMGVLCPPNSSTPYRELPESTSIGGYPTPSQVADIGDVDPAALDAEGRCLVLEFP 170
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC 189
F+LF VY P + + +R F+L F +L G+ + + GDLN++ ID
Sbjct: 171 AFVLFGVYSPA--NSNGLRDDFRLGFLMMLDARIRNLKKMGKNLILTGDLNVSRDLIDTA 228
Query: 190 DAG----------PDFAKNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERRE 228
A ++ R F +L +D+ R HP+R
Sbjct: 229 KADDHMRAEGMTHEEYLSTPNRRIFNQLLFNGKVPGKRDKGREEPVLYDLCREYHPDREG 288
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
+T W A N+G+RID ILC+ I+ K W
Sbjct: 289 MFTHWEQKINARPGNFGSRIDFILCS--------------------------IEIKDW-- 320
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI---------------------------- 320
+ + L GSDH PVY + +
Sbjct: 321 ----FMEANIQEGLMGSDHCPVYAVTKDKVSVGRSQEAAAEAEHPEEEKHILDSMNPTGM 376
Query: 321 -----------PQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 366
P P+L+ + LP R ++ + A +S G+ P
Sbjct: 377 FQGGVRLREYDPSRDMPALSGKRLPEFTKRRNIRDMFSKKPALSKSASTTRSTLNEGTAP 436
Query: 367 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT--KTIENCRDSANV 424
+ + + + +++L S++N + T + E R SA+
Sbjct: 437 SSAMIADPSSTATTEANKAL----------APPTSTANGDKAPLVTPLNSPEKRRASASA 486
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T+ + SN+ P K GQ SLK FF RS
Sbjct: 487 SPGKTLKRSKSNN--PVAGSNPTK-------GQQSLKGFFLTRSK--------------- 522
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 544
T+ S +++E P S + +P D S G S + +
Sbjct: 523 ----PTEPSPTKDEAPLSVPSTPAVPTGDPSS--QSATGAPDLSVSQTSETYDPDPLATQ 576
Query: 545 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 604
E + + W ++ + P C+ H EPC+ KKPG GR+F++C R GP+
Sbjct: 577 EASRES---WSKL--FSKKPTPRCE-HGEPCITLTTKKPGMNCGRQFYMCPRPIGPSGQK 630
Query: 605 EAN----CGYFKWA 614
E CG F W+
Sbjct: 631 ETGTQWRCGTFIWS 644
>gi|62085800|gb|AAX63291.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQVGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 IESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085812|gb|AAX63297.1| DNA lyase [Beauveria bassiana]
gi|62085814|gb|AAX63298.1| DNA lyase [Beauveria bassiana]
gi|62085824|gb|AAX63303.1| DNA lyase [Beauveria bassiana]
gi|62085826|gb|AAX63304.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 254/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q +L+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGQRVRNWDQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNKVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|405122231|gb|AFR96998.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. grubii H99]
Length = 671
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 151/336 (44%), Gaps = 83/336 (24%)
Query: 17 QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVA 76
Q ++ LLD DA I CFQE K R L+ + Y+ F++ R+ +TGYSGV
Sbjct: 2 QKKNIEGLLDELDAQIFCFQEHKTVRTRLEKSMACPGPYDGFWTFPRS----KTGYSGVC 57
Query: 77 TFCRVKSPFSSTEVALPVAAEEGFTGLL---------------ETSGS----KIMEGLE- 116
T+ + +P+ AEEG TGLL E GS ME ++
Sbjct: 58 TYV-------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDVERIGSYPDVNDMEWMDE 110
Query: 117 -DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ------ 169
D +K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ
Sbjct: 111 LDGTKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNGARRPYKMNYLHALQERVHLL 168
Query: 170 ---GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVE---SGGSFFDVFRS 221
GR + +VGD+NI +D + GP A+ + R +L + G DV R
Sbjct: 169 QAAGREVILVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDDWCAPKGPMIDVVRE 227
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
P+R + +TCW A NYG+RID++LC
Sbjct: 228 SWPQRDDMFTCWNQKLDARSANYGSRIDYVLCT--------------------------- 260
Query: 282 DYKRWKPGNAPRWKGG-MSTRLEGSDHAPVYMCLGE 316
PG P KGG + ++ GSDH PVY+ L E
Sbjct: 261 ------PGLRPWIKGGDILPKVYGSDHCPVYVDLHE 290
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 545 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCA 595
E+N A +W + + PLC H +PC +V KPGP G+RF++C+
Sbjct: 593 EKNAKAAPQWSSL--FAKKLPPLCTVHHKPCKDFIVMKPGPNKGKRFWLCS 641
>gi|409081894|gb|EKM82253.1| hypothetical protein AGABI1DRAFT_70906 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 641
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 156/386 (40%), Gaps = 117/386 (30%)
Query: 1 MKIVTYNVNGLRQ-----RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + F ++L++ +DIICFQE K R L + + Y
Sbjct: 1 MRILTWNINGIRTIPQYYPWNSFKDHDEILNNLHSDIICFQEVKSSRAALPKSVAVPPSY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
SFFS +TGYSGVA + R+ + P+ AEEG TGL+
Sbjct: 61 HSFFSFPVK----KTGYSGVAVYSRIST-------VTPLKAEEGLTGLVQPKTPLGPEER 109
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVY------- 146
E + ++ E+ + + +D EGR ++ D G F+L N Y
Sbjct: 110 VSRWDNYPPHQEYAAAQSENAYEEDGEVDYQLLDGEGRTLVIDFGLFVLINTYCPNDSST 169
Query: 147 --GPRADSEDTVRIQFKLQFFHVL----------QGRRIFVVGDLNIAPAAIDRCDAGPD 194
P A S R ++K Q+ +L + R++ V+GD+N A ID C+
Sbjct: 170 PATPAAPSPTMSRDKYKKQYHRLLSSRVESLIKNENRQVIVLGDINACAAVIDHCEGDIM 229
Query: 195 FAK---------------------NEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAY 230
++ E R W L +GG D+ R PER+ Y
Sbjct: 230 VSRARKANNLEKGDESGFWDCEGTGEGRRWLSDWLQRHDGAGGPMVDIVRRFWPERKGMY 289
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
TCW + A + NYGTRID+IL PG
Sbjct: 290 TCWNTKLSARETNYGTRIDYILVT---------------------------------PGL 316
Query: 291 APRW--KGGMSTRLEGSDHAPVYMCL 314
P W + ++GSDH PVY+ L
Sbjct: 317 IP-WIEAANIQPEIKGSDHCPVYIDL 341
>gi|426197032|gb|EKV46960.1| hypothetical protein AGABI2DRAFT_179106 [Agaricus bisporus var.
bisporus H97]
Length = 776
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/386 (27%), Positives = 156/386 (40%), Gaps = 117/386 (30%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+I+T+N+NG+R + F ++L++ +DIICFQE K R L + + Y
Sbjct: 31 MRILTWNINGIRTIPQYHPWNSFKDHDEILNNLHSDIICFQEVKSSRAALPKSVAVPPSY 90
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
SFFS +TGYSGVA + R+ + P+ AEEG TGL+
Sbjct: 91 HSFFSFPVK----KTGYSGVAVYSRIST-------VTPLKAEEGLTGLVQPKTPLGPEER 139
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
E + ++ E+ + + +D EGR ++ D G F+L N Y P S
Sbjct: 140 VSRWDNYPPHQEYAAAQSENAYEEDGEVDYQLLDGEGRALVIDFGLFVLINTYCPNDSST 199
Query: 154 DTV---------RIQFKLQFFHVL----------QGRRIFVVGDLNIAPAAIDRCDAGPD 194
T R ++K Q+ +L + R++ V+GD+N A ID C+
Sbjct: 200 PTTPAAPSPTMSRDKYKKQYHRLLSSRVESLIKNENRQVIVLGDINACAAVIDHCEGDIM 259
Query: 195 FAK---------------------NEFRIWFRSMLVE---SGGSFFDVFRSKHPERREAY 230
++ E R W L +GG D+ R PER+ Y
Sbjct: 260 VSRARKANNLEKGDESGFWDCEGTGEGRRWLSDWLQRHDGTGGPMVDIVRRFWPERKGMY 319
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
TCW + A + NYGTRID+IL PG
Sbjct: 320 TCWNTKLSARETNYGTRIDYILVT---------------------------------PGL 346
Query: 291 APRW--KGGMSTRLEGSDHAPVYMCL 314
P W + ++GSDH PVY+ L
Sbjct: 347 IP-WIEAANIQPEIKGSDHCPVYIDL 371
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA------------SNPEANCGYFKW 613
P C H EP V K G G++F++CAR GP +P+ C +FKW
Sbjct: 696 PKCVAHGEPAKEYTVNKQGANKGKKFWICARPVGPGYDKGRTERLREEVDPQYRCNFFKW 755
Query: 614 AFSKSKQ 620
+ KQ
Sbjct: 756 STDWWKQ 762
>gi|242215539|ref|XP_002473584.1| predicted protein [Postia placenta Mad-698-R]
gi|220727304|gb|EED81227.1| predicted protein [Postia placenta Mad-698-R]
Length = 475
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 134/487 (27%), Positives = 187/487 (38%), Gaps = 116/487 (23%)
Query: 18 FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVAT 77
+ S +L + ADIICFQE K R L D+ + Y FFS +KG GYSGVA
Sbjct: 4 YTSTEGILYALGADIICFQEMKSSRATLPRDVALPGPYHGFFSFP--VNKG--GYSGVAV 59
Query: 78 FCRVKSPFSSTEVALPVAAEEGFTGLLE-----------TSGSKIMEGLEDFSKDE---- 122
+ + + A P+ AEEG TG+L+ + + + F D
Sbjct: 60 Y-------ADSRKATPLRAEEGLTGVLQPKPPMSPEERVSMSYPLAHDFDPFPDDNGETD 112
Query: 123 --LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
+DSEGR ++ D G F+L NVY P S+ R+ FK+ F +LQ R
Sbjct: 113 SGFDALDSEGRTLVVDFGLFVLINVYCPAETSD--ARLPFKMNFHLLLQERIRKLIEKEH 170
Query: 172 -RIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ VVGD+NIA +D + F + R WFR+ L + G DV R PE
Sbjct: 171 REVIVVGDINIAATPLDHAEGNLPSSIATFWDHPAREWFRNWL-DPNGPMVDVIRMFWPE 229
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYK 284
R+ YTCW A + NYG RID++L L KH
Sbjct: 230 RKGLYTCWNMKLQARETNYGARIDYVLVTKGLLPWIKH---------------------- 267
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 344
G + L+GSDH P+Y+ L + L + G L
Sbjct: 268 -----------GDIQASLKGSDHCPIYIDLHD---------------ELLLENGETIKLR 301
Query: 345 SVLMKREVAKQGKSC-----KFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVY 399
+ + EV + + C +FSG S G E+ + S +L
Sbjct: 302 DAMKQNEVTQPPRLCAKFWDEFSGKQTVLSTFFGKREEMPSQTPSA------SPVLVTTI 355
Query: 400 CSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLS 459
SS K+I S+ + T Q + S + K K GQ
Sbjct: 356 PSS----------KSITRSFSSSRINDQRTSGQSAKRKPSDKGLSSGSNKKNKVDPGQAK 405
Query: 460 LKSFFHK 466
L SFF K
Sbjct: 406 LASFFSK 412
>gi|346320505|gb|EGX90105.1| DNA lyase [Cordyceps militaris CM01]
Length = 613
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 173/697 (24%), Positives = 269/697 (38%), Gaps = 179/697 (25%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+I T+N G+ +S G + D +ADI+ QETK++R++L+ D+V+ G++ +FS
Sbjct: 4 RITTWN--GIPLGISH-GERSAMFDILEADIVVMQETKIQRKDLQDDMVLVPGWDVYFSL 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLED-- 117
+ + GYSGVA + R PV AEEG G+L S + E ED
Sbjct: 61 P----QHKKGYSGVAIYTR-------NATCAPVLAEEGVLGILCPPKSNTPYRELPEDQR 109
Query: 118 -----------FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ DE L +DSEGRCV+ + F+LF VY P + D RI+F+ F
Sbjct: 110 IGGYPTSNQLSGNVDEAL-LDSEGRCVVLEFPAFVLFGVYSPA--NRDESRIEFRQSFVE 166
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSM 207
L G+++ + GDLNI + +D + K + W F +
Sbjct: 167 ALDARIRNLITAGKQVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPARRIFNQL 226
Query: 208 LVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ E +D+ R HP R +TCW + N G+RID+ILC+
Sbjct: 227 VFEGTVIGDRDTGREHAVLWDICRCFHPRRVGMHTCWDTKRNTRPANVGSRIDYILCS-- 284
Query: 257 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-- 314
D V ++ E L GSDH PVY +
Sbjct: 285 ------DGIKDWIVDSNIQEG------------------------LMGSDHCPVYATMSD 314
Query: 315 -----GEVPEIPQHSTPSLASRYLPIIRGVQQ--------TLVSVLMKREVAKQGKSCKF 361
G + + PS +R +Q L+ +R ++ + K
Sbjct: 315 KVTKNGTEMTLAEAMNPSNMFETGRRVRDWEQRDALRLSAKLIPEFDRRRNIREMFTSKA 374
Query: 362 SGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDS 421
S +L G + N D + +SG +SS ES NC +
Sbjct: 375 SQTLLHPEKIGGQSLQI-RNADMAAYTARNSGT-----TASSGAES--------TNCFE- 419
Query: 422 ANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDT 481
A+ ++ G +N++ ++ R + K+ G +KR S D T
Sbjct: 420 ---AAAPLVSVGGTNNV---NLQRGSQTKKRRPDGPAQAALPTNKRGKNSRDTKTKTGQT 473
Query: 482 SLN-----------VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS 530
+L NNSVT + E+VP S ++PV + +G S
Sbjct: 474 TLQGFFKPKTVASLENNSVTSVA---EQVPAG---SGRVPVRAQEAPLA--NGGLSPAKV 525
Query: 531 HDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTF--- 587
D E K W ++ L + +P C+ H EPC++ V KKPG
Sbjct: 526 FDPIEAKDS--------------WSKL--LGKRVVPKCE-HDEPCISLVTKKPGVNCVLA 568
Query: 588 ------GRRFFVCARAEGPASNPEAN----CGYFKWA 614
R F++C R GP+ + E + CG F W+
Sbjct: 569 GEAVDQRRSFYICPRPLGPSGDKERDTEWRCGTFIWS 605
>gi|321262100|ref|XP_003195769.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317462243|gb|ADV23982.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 651
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/332 (30%), Positives = 152/332 (45%), Gaps = 81/332 (24%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
++ LLD DA IICFQE K R L+ + Y+ F++ R+ +TGYSGV T+
Sbjct: 5 NIEGLLDELDAQIICFQEHKTVRTRLEKSMACPGPYDGFWTFPRS----KTGYSGVCTYV 60
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL---------------ETSGS-KIMEGLE-----DF 118
+ +P+ AEEG TGLL E GS +++ ++ D
Sbjct: 61 -------DSRYCVPLKAEEGITGLLLGDRLSTMKPPWTDVERIGSYPVVDDMDWMDELDG 113
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--------- 169
+K ++ K+D EGR V+ D G F+LFN+Y P + + R +K+ + H LQ
Sbjct: 114 TKFDVKKLDMEGRAVVCDFGLFVLFNLYCP--NETNDARRPYKMNYLHALQERVHLLQAA 171
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSML---VESGGSFFDVFRSKHP 224
GR + +VGD+NI +D + GP A+ + R +L G DV R P
Sbjct: 172 GREVIIVGDINIVRQPMDSGE-GPVRSSAEQHYSHPARRILDNWCAPKGPMVDVIRESWP 230
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+R + +TCW A NYG+RID++LC H L+
Sbjct: 231 QRDDMFTCWNQKLDARSANYGSRIDYVLCT-------HGLRP------------------ 265
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
W G G + +++ GSDH PVY+ L E
Sbjct: 266 -WIKG------GDILSKVYGSDHCPVYVDLHE 290
>gi|332860859|ref|XP_003317535.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Pan
troglodytes]
Length = 466
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 163/372 (43%), Gaps = 99/372 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFG----------SLRKLLDSFDADIICFQETKLRRQELKSDLV 50
+++V++N+NG+R+ + ++ ++LD DADI+C QETK+ R L L
Sbjct: 2 LRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPLA 61
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK 110
+ +GY S+FS +R R+GYSGVATFC+ + A PVAAEEG TGL T
Sbjct: 62 IVEGYNSYFSFSRN----RSGYSGVATFCK--------DNATPVAAEEGLTGLFATQNG- 108
Query: 111 IMEGLEDFSKDELLKIDSEGRCVITDH--GHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
D +L + +G + ++H G +L +V
Sbjct: 109 -CHSATHMPTDRVL--NHQG--LYSEHLSGSALLIHV----------------------- 140
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAG--PDFAKNEFRIWFRSMLVESG-------GSFFDVF 219
++GDLN A ID DA F ++ R W S+L G G F D +
Sbjct: 141 -----IILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSY 195
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
R P++ A+TCW + TGA NYG+R+D++L + +
Sbjct: 196 RCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVL----------------------GDRTL 233
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGV 339
+ID + + + GSDH PV L V +P P L +R+LP G
Sbjct: 234 VIDTFQ---------ASFLLPEVMGSDHCPVGAVL-SVSSVPAKQCPPLCTRFLPEFAGT 283
Query: 340 QQTLVSVLMKRE 351
Q ++ L+ E
Sbjct: 284 QLKILRFLVPLE 295
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC GH+EPCV R VKKPGP GRRF++CAR GP ++P + C +F W+
Sbjct: 415 PLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWS 463
>gi|302837660|ref|XP_002950389.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
Length = 1732
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 148/333 (44%), Gaps = 82/333 (24%)
Query: 1 MKIVTYNVNGLRQRVSQF----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+ I+ +N+N L V S R +D DI CFQE KL + +L +G++
Sbjct: 19 LNIMCWNINCLTPTVRNMELRHKSFRGFMDHLQLDIACFQEVKLPAARITRELACVEGFQ 78
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++ S + GYSGV T+CR T A P A ++
Sbjct: 79 SFWA----SSTSKPGYSGVTTWCR-------TATAAPRDA-----------------AVD 110
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVLQ------ 169
DE ++D+EGR V+TDHG F+L NVY P A D + R+ +KL F L+
Sbjct: 111 CLGGDERPELDTEGRFVLTDHGAFVLLNVYVPNAGDRPERARLPYKLAFLRALRTKMDEL 170
Query: 170 ---GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGG---SFFDVFRS 221
GR++ +VGDLNI A +R D P DF ++ + L E G ++ DV+R
Sbjct: 171 TALGRQVVLVGDLNI---AAERRDVHPTLDFDS----MYDKQELAELSGLIAAYPDVWRH 223
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
HP+ +YT W T A FN G RID++L + L +V C+IL
Sbjct: 224 LHPDTEGSYTVWDERTSARAFNTGLRIDYVLVSPGLLP-------------YVQSCEILT 270
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
P+W SDHA + + L
Sbjct: 271 AA-----AIPPKW----------SDHAAILLTL 288
>gi|62085820|gb|AAX63301.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTPSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRDSANV 424
N G T D + + ++ +G G+ C+++ + +E R +
Sbjct: 373 ENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSRKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085792|gb|AAX63287.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 256/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGVLGVLCPPKSNMPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E+
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEATVIGDRDDDRECAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+ ID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSPIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLG----------EVPEI---- 320
E L GSDH PVY + ++ E+
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 321 ------------PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRARNWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSL----NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
N G T D + + ++ C + + V + + +E R +
Sbjct: 373 ENR-GVTSDTAASSGTTMIGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + +P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTLPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085836|gb|AAX63309.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 157/659 (23%), Positives = 257/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTPSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVAKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V + Q +L+++ +P ++ + + R ++ G + G P
Sbjct: 315 NMFQDGRRVRKWEQRDALALSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSPQI 372
Query: 369 SNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSS----NQESEGEFTKTIENCRDSANV 424
N G T D + + ++ +G G+ C+++ + +E R +
Sbjct: 373 ENR-GVTSDTAASSGMTM---IGAG---GMACTNNVGAAAALAPPRANTGLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVLSRKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085884|gb|AAX63333.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 155/659 (23%), Positives = 253/659 (38%), Gaps = 158/659 (23%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLRDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPKLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+I C+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYIFCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE------------------ 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSDKVTKDGRKIDLAEVMNPA 314
Query: 317 --------VPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAE 368
V Q SL+++ +P ++ + + R ++ G + G P +
Sbjct: 315 NMFQDGRRVRNWEQRDALSLSAKLIPEFD--RRRNIKDMFSRTASQTGSQAEKIGDSP-Q 371
Query: 369 SNSTGDTEDCSENVDRSLNN----YCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANV 424
S G T D + + +++ C + + V + + +E R +
Sbjct: 372 VESRGVTPDTAASSGTTMSGAGGMACTNNVGAAVALAPPRANT------GLERGRQTKRD 425
Query: 425 ASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
+ T +N S D KAK S GQ +L+ FF ++ V+ D S + +
Sbjct: 426 SEQPTELGAPANKKSKSFSD---AKAKASN-GQRTLQGFFKPKA-VASDTATSAGELAPA 480
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVN---SSVCSHDQDEKKGKRF 541
V + P+++ S++ PV + S D E K
Sbjct: 481 DRKQV---PARERTPPQANGGSSQAPVPSPKTPTEPIVAATKLFSPTKVFDPIEAKE--- 534
Query: 542 LDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++ R GP
Sbjct: 535 -----------SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYISPRPLGP 579
>gi|347840170|emb|CCD54742.1| similar to DNA lyase [Botryotinia fuckeliana]
Length = 651
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 141/310 (45%), Gaps = 73/310 (23%)
Query: 1 MKIVTYN--VNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMAD 53
++I T+N VNG+R Q + + + D + DI+ QETK++R++L+ D+V+
Sbjct: 11 LRITTWNETVNGIRNPFGYQPWREKRTFSAMFDILETDILVMQETKIQRKDLRDDMVLVP 70
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIME 113
G++ +FS K + GYSGVA + R V P+ AEEG TG+L S
Sbjct: 71 GWDVYFSLP----KYKKGYSGVAIYTR-------NSVCAPIRAEEGITGVLTPPNSTT-- 117
Query: 114 GLEDFSKDELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
D KD+ + +DSEGRCVI + FIL VY P + D
Sbjct: 118 SFRDLPKDQQIGGYPTGAQLQDYFLDAATLDSEGRCVILEFPAFILIGVYCPA--TRDET 175
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 200
R +F++ F + L G+ +F+ GDLNI ID +A K
Sbjct: 176 RDEFRIGFLNALDTRVRNLVALGKSVFLTGDLNIIREEIDTANAEEKLKKEGLTVEQYIS 235
Query: 201 ---RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNY 244
R F +LV GG +D+ R HP R+ +TCW A N+
Sbjct: 236 TPARRLFNHLLV--GGKVIGDRDEGKEPQVMWDICRGFHPTRKGMFTCWDQKMNARPGNF 293
Query: 245 GTRIDHILCA 254
G+RID++LC+
Sbjct: 294 GSRIDYVLCS 303
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 535 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
EK K DKE ++ VA W +L+ IP HKEPC++ + KK G GR F+
Sbjct: 561 EKTCKSRQDKEVHDPIVAKESW---SKLLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 617
Query: 593 VCARAEGPASNPEAN----CGYFKWA 614
+C R GP+ E N C F W+
Sbjct: 618 MCPRPLGPSGQQEKNTEWRCNTFIWS 643
>gi|168008755|ref|XP_001757072.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 83/349 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF-----DADIICFQETKLRRQELKSDLVMADGY 55
M+I ++NVNGLR + + ++ +ADI+CFQE K++ ++L+ + DGY
Sbjct: 82 MRIFSWNVNGLRTTLKDVAACHTSASNYFCQVLNADIVCFQEAKIQEEKLEKWIACVDGY 141
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
S ++ +R + GYSGV T+ + E P+ A+ + G
Sbjct: 142 HSHWAFSRE----KKGYSGVVTYVK--------EALSPLDAKADWLG------------- 176
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT--VRIQFKLQFFHVLQ---- 169
E+ S ++L +EGR + TDHG F+L NVY P + D R+ FK+++ L+
Sbjct: 177 ENSSAEDLC---NEGRLMCTDHGSFVLLNVYVPNSGDGDKGRPRLDFKMRYLKALEQTCD 233
Query: 170 -----GRRIFVVGDLNIAPAAID---RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
G+ I +VGD N+A ID R ++ E R W L + D++R
Sbjct: 234 DLVRSGKHIVIVGDFNVAHKDIDVHSRWKVEEIYSLEE-REWLDGFL----SRYIDLYRH 288
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
HP+ + ++ W + A N G RID+ +C + F+T V E DI+
Sbjct: 289 FHPDEKNIFSVWDQKSDARTRNEGLRIDYAIC------------NEGFLT-EVLETDIVK 335
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLAS 330
K+W SDHA V + L E P +P H P+L+S
Sbjct: 336 MQKQW------------------SDHAAVVVTLKEQPNLPPHPAPALSS 366
>gi|403415135|emb|CCM01835.1| predicted protein [Fibroporia radiculosa]
Length = 576
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 155/635 (24%), Positives = 244/635 (38%), Gaps = 147/635 (23%)
Query: 45 LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL 104
L+ D+ + Y +FFS +KG GYSGVA + ++ +P+ AEEG G L
Sbjct: 2 LQRDVAVPGPYHAFFSFP--VNKG--GYSGVAVYTNSRN-------VVPLKAEEGLLGTL 50
Query: 105 E-----TSGSKIMEGLE-----DFSKDE-------LLKIDSEGRCVITDHGHFILFNVYG 147
+ + +I D DE +D EGR ++ D G F+L NVY
Sbjct: 51 QPKPPLSEEERISTAYPRAHHIDAFPDEADETSSCFDALDFEGRTLVLDFGLFVLINVYC 110
Query: 148 PRADSEDTVRIQFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDAG----- 192
P S+ R+ FK+ F +LQ R + V+GD+NIA A +D D
Sbjct: 111 PAETSD--ARLPFKMNFHLLLQERVRKLIEEEHREVIVLGDINIAAAPLDHGDGHLPSNV 168
Query: 193 PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
F + R WFR L G DV RS P+R+ +TCW A + NYG RID++L
Sbjct: 169 ATFWDHPARQWFRQWL-NPNGPMIDVIRSFWPDRKGLFTCWNMKLQARETNYGARIDYVL 227
Query: 253 CAGPCLHQ-KHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
L KH G + L+GSDH P++
Sbjct: 228 ITRGLLPWIKH---------------------------------GDIQASLKGSDHCPIF 254
Query: 312 MCL--------GEVPEIPQ-------HSTPSLASRYLPIIRGVQQTLVSVLMKREVAK-- 354
+ L GE+ ++ P L++++ G Q L + KR ++
Sbjct: 255 VDLHDEITLESGELIKLSDAMKQKEGMQAPRLSAKFWEEFSGKQTMLSTFFGKRNSSQLQ 314
Query: 355 --QGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFT 412
+ FS LP + + ++ +G+ S+SN + T
Sbjct: 315 TFDETTANFSVPLPRSPQFSSSSVPLTD---------------EGMSISTSNSNAS---T 356
Query: 413 KTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRS-NVS 471
+TI N + +AS + S + K +K++ GQ + SFF K + + S
Sbjct: 357 ETIRNSKPLRLIASAPLKRKPSEKSFT-----SGSTKKRKAEAGQSKIASFFSKPTISKS 411
Query: 472 HDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSH 531
+ D + + ++V S P S H + DY + EL + +
Sbjct: 412 QPKEVIVLDEADSFPDAVPSCS-PPSTFPSSDHQLD----ADYRLAC-ELSATQVDLITQ 465
Query: 532 DQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRF 591
+ + N + W + ++ P C H EP V K GP G++F
Sbjct: 466 SEASQPNA----STSQNTSKNAWSDLFAPLQP--PRCVTHGEPAKLYTVNKQGPNKGKKF 519
Query: 592 FVCARAEGPA------------SNPEANCGYFKWA 614
++C+R GP N + C +FKWA
Sbjct: 520 YICSRPVGPGYDKGKGERPRDEVNHQYRCNFFKWA 554
>gi|134079677|emb|CAK97103.1| unnamed protein product [Aspergillus niger]
Length = 572
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/342 (29%), Positives = 144/342 (42%), Gaps = 90/342 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + GYSGV + R
Sbjct: 20 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGYSGVVIYTR--- 72
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
P+ AEEG +G+L + G +E L D +D
Sbjct: 73 ----NATCAPIRAEEGLSGMLCPPNSSVSFRELPENQQIGGYPTIEQLSQLEVDAA-TLD 127
Query: 128 SEGRCVITDHGHFILFNVYGP--RADSEDTVRIQF------KLQFFHVLQGRRIFVVGDL 179
SEGRCVI + F+L +Y P R +S D+ R F +++ V G+R+FV GDL
Sbjct: 128 SEGRCVILEFPAFVLLGIYSPANRDESRDSFRRSFIDLMDARIRNL-VAMGKRVFVTGDL 186
Query: 180 NIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLV--------ESGGS---FFDV 218
NI+ ID AG +F R +L E G D+
Sbjct: 187 NISRGEIDAAHAGEAIRKGTLTEDEFVSTHARRVLNQLLSDGKVIGEREEGREQPVLHDI 246
Query: 219 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
RS HP R+ YTCW A NYG+RID++LC+
Sbjct: 247 CRSFHPGRKGMYTCWEQRINARPGNYGSRIDYVLCS------------------------ 282
Query: 279 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 320
+D + W + L GSDH PVY E I
Sbjct: 283 --LDMQEWF------CDSNIQEGLMGSDHCPVYAMFKETVNI 316
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGY 610
PLC+GH+EPC++ KKPG GR F++C R GP+ N E +
Sbjct: 480 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKASAF 524
>gi|327349957|gb|EGE78814.1| DNA lyase Apn2 [Ajellomyces dermatitidis ATCC 18188]
Length = 642
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 141/312 (45%), Gaps = 75/312 (24%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ DADI+ FQETK+++++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ FFS K + GYSGV + R P+ AEEG TG+L
Sbjct: 62 DCFFSLP----KYKKGYSGVVIYTR-------NSKCCPIRAEEGITGILYLPASVSPFPS 110
Query: 105 -----------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE 153
+ G E L S + +DSEGRC+I + F+L VY P +
Sbjct: 111 PTSFRDLPEEAQIGGYPTAEQLA-LSDVDASTLDSEGRCMILEFPAFVLIGVYCPA--NR 167
Query: 154 DTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA----------GPD 194
D R F+ F ++L G+R+ V+GDLNI + ID A +
Sbjct: 168 DETRDGFRTGFVNILDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSE 227
Query: 195 FAKNEFRIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQ 241
F R F ++ GG D+ R HP+R YTCW A
Sbjct: 228 FVSAPVRRVFNQLVY--GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARP 285
Query: 242 FNYGTRIDHILC 253
NYG+RID++LC
Sbjct: 286 GNYGSRIDYVLC 297
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 450 AKKSQLGQLSLKSFFHKR-----SNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 504
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 468 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 517
Query: 505 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 555
N P + +SC + G + S++ D R D N + W
Sbjct: 518 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 574
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 611
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 575 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 632
Query: 612 KWA 614
W+
Sbjct: 633 IWS 635
>gi|111054099|gb|ABH04240.1| DNA lyase-like protein [Pseudocercospora fijiensis]
Length = 622
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 155/674 (22%), Positives = 258/674 (38%), Gaps = 151/674 (22%)
Query: 7 NVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
NVNG+R S + + D ++DI+ QE K++R++L+ D+V+ DG++ +FS
Sbjct: 4 NVNGIRNPFSYPPWNVSRTFSAMFDILESDIVVMQELKIQRKDLRDDMVLVDGWDCYFSL 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSG------------- 108
K + GYSGV + R P+ AEEG G+L ++
Sbjct: 64 P----KHKKGYSGVGIYTR-------NATCAPIRAEEGVLGVLPSANGTPYRDLPDEDSI 112
Query: 109 -----SKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADS--EDTVRIQFK 161
S M + + ++ +D+EGRCV+ F+LF VY P + D R F
Sbjct: 113 GGYLTSVQMADIAEIGGEDPAGLDAEGRCVVVKSPAFVLFGVYSPANSNGLRDGFRHGFV 172
Query: 162 LQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGP-------------DFAKNEFRIW 203
H ++ G+ + +VGDLN+ I D+GP +F R
Sbjct: 173 CALDHRIRNLIKAGKSVILVGDLNVTRHEI---DSGPTLEEMRKGLITHEEFISGPNRRI 229
Query: 204 FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
F L++ G F+D R HP+R+ YT W + A N+G+RID +L
Sbjct: 230 FNQQLIDGEVVGERDEGREKGVFWDTTRIFHPDRKGMYTHWDTKVNARPGNFGSRIDFVL 289
Query: 253 C--AGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
A + ++Q + H C + ID++ N G L+ + V
Sbjct: 290 VSEALRSWVKYGNIQEGLLGSDH---CPVYIDFE-----NEVTVNDGKIALLDIMNPPAV 341
Query: 311 YMCLGEVPEIPQHSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPA 367
++ E STP +++ +P R ++ + +K+ P
Sbjct: 342 FVGGERKQEWTIASTPGFSAKRMPEFDKRRTIKSMFAAPALKKS------------QQPT 389
Query: 368 ESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASH 427
S +D V E+EG + +
Sbjct: 390 PPGSVAQADDSQPAV-----------------------ETEG------------STAPAK 414
Query: 428 STITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNN 487
I+ ++ P ++ KA ++ GQ SLK FF +S + +
Sbjct: 415 RKISVSTTPKEYPLKKQKSDIKAAPTK-GQQSLKGFFQAKS----------VPITAAAQS 463
Query: 488 SVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERN 547
+ D E+ + ++ + + S + ++S + D D ++F K
Sbjct: 464 AEKDLKNETEDTDSTAPNTGGVESNEDSETTEPPRTPSASQITADTDPSP-RKFASK--- 519
Query: 548 NVALLEWRRIQQLMETSIP---LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 604
+A E + Q S P LC+GH EPC + KK G GR F++CAR GP+
Sbjct: 520 -LASAEKSQHQWGALFSRPVAPLCEGHHEPCKTMLTKKKGSNQGRSFWMCARPLGPSGEK 578
Query: 605 EAN----CGYFKWA 614
E CG F W+
Sbjct: 579 ERGTQWRCGTFIWS 592
>gi|451852174|gb|EMD65469.1| hypothetical protein COCSADRAFT_169947 [Cochliobolus sativus
ND90Pr]
Length = 632
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 168/712 (23%), Positives = 262/712 (36%), Gaps = 187/712 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D+ + DI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGVR---NPFGYKPWSTNRTFNAMFDTLETDIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSK 110
G++ +FS K + GYSGV F R V P+ AEEG G L S +
Sbjct: 59 QGWDCYFSLP----KHKKGYSGVGIFTR-------QSVCAPIRAEEGVLGALCPPNSTTP 107
Query: 111 IMEGLEDFSKDELL---------------KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E E S L +D EGRC++ + F+LF VY P + +
Sbjct: 108 YRELPESASIGGYLTPAQIAALPSDLDAESLDLEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP----------DFA 196
+R F++ F L+ G+ + + GDLN++ ID A ++
Sbjct: 166 LRDGFRIGFLIALETRIRNLTKMGKNVVLTGDLNVSRDLIDTARADEHIRSEGMTHEEYL 225
Query: 197 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 STPNRRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFG 285
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
+RID ILC+ I K W + L GS
Sbjct: 286 SRIDFILCS--------------------------ITIKDW------FQDANIQEGLMGS 313
Query: 306 DHAPVYMCLGE-VPEI----------------------------------PQHSTPSLAS 330
DH PVY L + VP + P P+L+
Sbjct: 314 DHCPVYAVLKDKVPVLRTSGPDSVEEEVHILDLMNPAGMFKDGVRQRDYDPAKDVPALSG 373
Query: 331 RYLPII---RGVQQTLV--SVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 385
+ LP R ++ S K + + A+ ST T + E +DR
Sbjct: 374 KLLPEFTKRRNIRDMFSKKSTPPKPNPNPTPAVAQLDVTTKADVASTASTAE--EQMDRD 431
Query: 386 LNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDR 445
L ++ + + + K+ E R SA+ + I +G ++
Sbjct: 432 LALAIEASKADMLADTENKTTFSQSPLKSAEKRRASASASPGKPIKRGKPGALA------ 485
Query: 446 ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
+ K GQ SLK FF S + D + D + +V++ T + SQ H
Sbjct: 486 ---VSTKGNKGQQSLKGFFQTHSKST--DPITPNDAAPSVSSLKTTDTPSQNATEMPHPP 540
Query: 506 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
S P T N S S + ++ R W ++ + +
Sbjct: 541 SP--PST-----------ANESFDSDPRASQEASR-----------EGWTKL--FSKKAA 574
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
P C+ H E C+ KKPG GR+F+VC R GP+ + E CG F W
Sbjct: 575 PRCE-HGEHCITLTTKKPGVNCGRQFWVCPRPIGPSGHKEVGTQWRCGTFIW 625
>gi|156056543|ref|XP_001594195.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980]
gi|154701788|gb|EDO01527.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 131/282 (46%), Gaps = 66/282 (23%)
Query: 22 RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81
+ + D + DI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 3 KTMFDILETDILVMQETKIQRKDLRDDMVLVSGWDVFFSLP----KHKKGYSGVAIYTR- 57
Query: 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE-----------------LL 124
V P+ AEEG TG+L S D KD+ +
Sbjct: 58 ------NSVCAPIRAEEGITGVLTPPNSTT--SFRDLPKDQQIGGYPTNAQLQGYFLDAM 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCVI + FIL VY P + D R +F+L F + L G+ + +
Sbjct: 110 TLDSEGRCVILEFPAFILIGVYCPA--NRDETRDEFRLAFLNALDTRIRNLVALGKSVLL 167
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESGGS----------- 214
VGDLN+ ID + K NE+ R F +L+ GG
Sbjct: 168 VGDLNVIGDEIDTANLEEQLKKQKLTLNEYISTPARRLFNHLLI--GGKVVGERDEGREP 225
Query: 215 --FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+DV R HP R++ +TCW A N+G+RID+ILC+
Sbjct: 226 QVMWDVCRGFHPARKKMFTCWEQKKNARPGNFGSRIDYILCS 267
>gi|67537132|ref|XP_662340.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
gi|40741588|gb|EAA60778.1| hypothetical protein AN4736.2 [Aspergillus nidulans FGSC A4]
Length = 554
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 155/619 (25%), Positives = 223/619 (36%), Gaps = 160/619 (25%)
Query: 71 GYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEG 114
GYSGVA + R P+ AEEG TG L + G +E
Sbjct: 13 GYSGVAIYTR-------NATCAPIRAEEGLTGTLCPPNSLVSFRDLPEDQQIGGYPTIEQ 65
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRIQFKLQFFH------ 166
L D +DSEGRCVI + F+L +Y P R +S D R F L
Sbjct: 66 LSKLKLDAE-TLDSEGRCVILEFPAFVLIGLYCPANRDESRDAFRQNF-LDLMDARVRNL 123
Query: 167 VLQGRRIFVVGDLNIAPAAIDRCDAGP----------DFAKNEFRIWFRSMLVESG---- 212
V G+R+FV GD+NI+ ID A DF R F +L++
Sbjct: 124 VALGKRVFVTGDINISRGEIDAAHAAENIKKGVTTEDDFVSAPARRLFNQLLIDGKVVGD 183
Query: 213 -------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
FD+ RS HP+R+ YTCW A NYG+RID++LC+
Sbjct: 184 RDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNYGSRIDYVLCS----------- 232
Query: 266 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 325
+D K W + + L GSDH PVY ++
Sbjct: 233 ---------------LDMKDW------FFDSNIQEGLMGSDHCPVYAVFKDL-------- 263
Query: 326 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGK-----SCKF----SGSLPAESNSTGDTE 376
+P+ G Q ++ ++ V K G+ + KF SG L E + +
Sbjct: 264 -------IPLNDG-QSHILDIMNPPGVFKNGERQQNYTAKFLLPLSGRLIPEFDRRRSIK 315
Query: 377 DCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENC-----RDSANVASHSTIT 431
D + S Q + SN+ES +T N D+ S+ T+
Sbjct: 316 DMFMRKPSQPSPKTSSP--QNLTACLSNEESSMT-ARTATNTPKPSDADAPASVSNDTLQ 372
Query: 432 QGS------SNHISPFHVDR-ARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITD---- 480
+G+ + P + A + +GQ +LK FF + + DN D
Sbjct: 373 KGTVRKRPVGTEVPPVKRSKSASTQTGAPTIGQSTLKGFFKPKCTLEPKDNMLSKDEGQG 432
Query: 481 -TSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGK 539
+S D + E+ ++ K P E G V S
Sbjct: 433 PAEFPFISSQQDVT---EQTSKAALEPEKAPTPMTPVLSKEDAGFIDPVASKQ------- 482
Query: 540 RFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 599
+W ++ + P C H E C++ KKPGP FGR F++C R G
Sbjct: 483 -------------DWSKL--FTKKPPPKCGEHGEECISLKTKKPGPNFGRTFWICPRPLG 527
Query: 600 PASNPEAN----CGYFKWA 614
P+ N E C F WA
Sbjct: 528 PSGNKEKGTEWRCSTFIWA 546
>gi|452836974|gb|EME38917.1| hypothetical protein DOTSEDRAFT_180911 [Dothistroma septosporum
NZE10]
Length = 661
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 143/303 (47%), Gaps = 62/303 (20%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + D ++DI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNTTRSYSSMFDILESDIVVMQELKIQRKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R P+ AEEG G+L + SG + +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLPSPSGIRYRDL 109
Query: 115 LED---------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E+ EL +D+EGRCV+ + F+LF VY P A+S R F+
Sbjct: 110 PEEESIGGYPSVLQAAELGVDAAALDAEGRCVVVEFTAFVLFGVYSP-ANSMGN-RDDFR 167
Query: 162 LQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-----RI 202
F + L +G+ + +VGDLN++ ID D K E+ R
Sbjct: 168 FGFINALDCRIRNLVKEGKNVVLVGDLNVSRHEIDSAPTLEDIRKGLGTREEYLMSPNRR 227
Query: 203 WFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHI 251
F MLV+ G +D R HP+R+ YTCW + T A NYG RID +
Sbjct: 228 IFNQMLVDGEVLDERDVGREKGVLWDTSRLFHPDRKGMYTCWETKTNARPGNYGARIDFV 287
Query: 252 LCA 254
L +
Sbjct: 288 LVS 290
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
PLC+GH EPC + KK G GR F++CAR GP+ E CG F W
Sbjct: 574 PLCEGHSEPCKSMQTKKKGSNQGRSFWMCARPLGPSGEKEKGTQWRCGTFIW 625
>gi|322709548|gb|EFZ01124.1| DNA lyase [Metarhizium anisopliae ARSEF 23]
Length = 608
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 156/666 (23%), Positives = 252/666 (37%), Gaps = 155/666 (23%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRT----------------GYSGVATF 78
QETK++R++L+ D+V+ G++ FFS + KG GYSGVA +
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVFFSLPK-HKKGSVHSDAPAVSIDGLLIIAGYSGVAIY 59
Query: 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK------------- 125
R S P+ AEEG TG+L K D D+ +
Sbjct: 60 TRNAS-------CAPIRAEEGITGVL--CPPKSTTNFRDLPSDQQIGGYPRPGQLSGIVE 110
Query: 126 ---IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
+DSEGRCVI + F+L VY P + D R++F+ FF L +G+ +
Sbjct: 111 DTVLDSEGRCVILEFPAFVLLGVYCPA--NRDESRVEFRTSFFEALDVRIRNLVAEGKEV 168
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG----------- 212
+ GDLN+ + +D + + K I W F ++ E
Sbjct: 169 ILTGDLNVIRSEVDSTNVMENLRKENMTIGEWISLPTRRIFNQLIFEGNIVGDRDEGRQT 228
Query: 213 GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTC 272
+D+ R HP R TCW + N G+RID+ILC+
Sbjct: 229 PVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCS------------------ 270
Query: 273 HVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL-GEVPEIPQHSTPSLASR 331
+ + D+ W + L GSDH PV+ + G + S SL
Sbjct: 271 -----NGIRDWFTW---------ANIQEGLMGSDHCPVFATIAGTIAR--NGSQVSLNDV 314
Query: 332 YLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC-------SENVDR 384
P T V L ++++ S L E + D +E
Sbjct: 315 MNPAGMFKNGTRVRELAQKDI------LPLSAKLIPEFDRRQSIRDMFSRKVTSAERSTT 368
Query: 385 SLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHI--SPFH 442
N+ S + +S N S T + D HS + S + I +P
Sbjct: 369 PHNSGSSSFPAEDASQASDNDASSQAMVNTNTSSTDKPAALPHSQPRKRSPDPIDSTPRQ 428
Query: 443 VDRARKKA------KKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSL-- 494
+ R++ A +K GQ +LK FF +++ T++ + ++
Sbjct: 429 LKRSKSGADPIGSRQKISAGQTTLKGFFKPV-------GSALPSTAVLADPEAQSSAAHL 481
Query: 495 -SQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLE 553
+ + P + S+K+ ++ + E HD + + D+ + + E
Sbjct: 482 PATKTPPSTKRSSDKLTSKEFVPPISEQP-------VHDSFIRTAPKSPDRVFDPIQAKE 534
Query: 554 -WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----C 608
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP+ E C
Sbjct: 535 SWSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKETGSEWRC 591
Query: 609 GYFKWA 614
G F W+
Sbjct: 592 GTFIWS 597
>gi|409040708|gb|EKM50195.1| hypothetical protein PHACADRAFT_153651 [Phanerochaete carnosa
HHB-10118-sp]
Length = 496
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 141/297 (47%), Gaps = 56/297 (18%)
Query: 24 LLDSFDADIICFQ----ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+LD ADIICFQ E K R L D+ + D Y SFFS + + GYSGVA +
Sbjct: 7 ILDEVGADIICFQGSDLEMKTTRAALPRDVAIPDNYTSFFSFPVS----KGGYSGVAVYT 62
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSG--------SKIMEGLEDFS--KDE------- 122
+ S+EV +P+ AEEG +G L+ S+ + D + DE
Sbjct: 63 K------SSEV-VPLKAEEGLSGRLQPKPPLSAEERISQTYPSVNDVAAYPDEDGDVPGT 115
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----------QGRR 172
+DSEGR ++ D G F+L NVY P S+ R+ FK+ + H+L +GR
Sbjct: 116 FDALDSEGRALVLDFGLFVLVNVYCPNETSD--ARLPFKMNY-HLLVAERVRRFIDEGRE 172
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ V+GD+NI D CD + F R WFR L + G D R+ P R+
Sbjct: 173 VIVMGDMNICATPQDHCDGHLTSVREVFWDHPARAWFRHWL-DPDGPMVDAVRTFWPARK 231
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ-KH-DLQSHNFVTCHVNECDILID 282
+TCW T A + NYGTR+D+IL L KH D+Q + H C I ID
Sbjct: 232 GMFTCWNLRTQARETNYGTRVDYILVTKGLLKWVKHGDIQPSVKGSDH---CPIYID 285
>gi|256086538|ref|XP_002579455.1| ap endonuclease [Schistosoma mansoni]
Length = 426
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 178/429 (41%), Gaps = 92/429 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I ++N+NGLR S L+ +LDS +DIIC QETK ++ + AD Y +FS
Sbjct: 4 VRICSWNINGLR---SIQHPLKSILDSLTSDIICIQETK-TTPDISREFAFADNYNGYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEV---ALPVAAEEGFTGLLETSGSKIMEGLED 117
+TGYSG A FCR +P T+ + E G ++ +
Sbjct: 60 ----HSIHKTGYSGTAVFCR--NPLKPTKTFHSLNDILVESISCQNNSIDGWGFLKRKLN 113
Query: 118 FSKDELLKIDSEGRCVITDHGH--------------FILFNVYGPRADSEDTVRIQFKLQ 163
S E +D+EGR + I+ ++Y PR + E+ R+ +K
Sbjct: 114 ISHTEARNLDAEGRVLGLQFSTDIFTTFRTPDEIRPLIVLSIYFPRLNPENVERLNYKHL 173
Query: 164 FFHVLQ--------GRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWFRSMLVESG 212
F +Q + + GD NI ID C + D N FR WF +L+E
Sbjct: 174 FQSAVQLCIESLLIENNVVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWFDQLLIEEQ 233
Query: 213 GS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259
F D+FR HP R+ A+TCW S T A Q NYG R+D+IL
Sbjct: 234 QDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYIL------- 286
Query: 260 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 319
D++ +T +++ +I + + + + GSDH P+Y ++P
Sbjct: 287 --FDMKLVEIITT-ISDNNI---------------QADLMSHINGSDHCPIY---ADLPY 325
Query: 320 ------IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 373
I +S P S Y P + Q L S +M + +K K S++T
Sbjct: 326 FYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA-------FTSHNTT 378
Query: 374 DTEDCSENV 382
+ C NV
Sbjct: 379 TSVSCVRNV 387
>gi|451997504|gb|EMD89969.1| hypothetical protein COCHEDRAFT_1178143 [Cochliobolus
heterostrophus C5]
Length = 632
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 162/712 (22%), Positives = 262/712 (36%), Gaps = 187/712 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D + DI+ QE K++R++L D+V+
Sbjct: 2 VRITTWNVNGIR---NPFGYKPWSTNRTFNAMFDILETDIVIMQELKIQRKDLTDDMVLV 58
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSK 110
G++ +FS K + GYSGV F R V P+ AEEG G L S +
Sbjct: 59 QGWDCYFSLP----KHKKGYSGVGIFTR-------QAVCAPIRAEEGVLGALCPPNSTTP 107
Query: 111 IMEGLEDFSKDELL---------------KIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
E E S L +D EGRC++ + F+LF VY P + +
Sbjct: 108 YRELPESASIGGYLTPTQIATLPPDLDAESLDLEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGP----------DFA 196
+R F++ F L+ G+++ + GDLN++ ID A ++
Sbjct: 166 LRDGFRIGFLIALETRIRNLTKMGKKVILTGDLNVSRDLIDTARAEEHIRTEGMTHDEYL 225
Query: 197 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 NTPNRRIFNQLLLNGKVPGQRDEGREEPVLYDLCREFHPDREGMFTHWEQKINARPSNFG 285
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
+RID ILC+ I K W + L GS
Sbjct: 286 SRIDFILCS--------------------------ITIKDW------FQDANIQEGLMGS 313
Query: 306 DHAPVYMCLGE-VPEI----------------------------------PQHSTPSLAS 330
DH PVY L + VP + P P+L+
Sbjct: 314 DHCPVYAVLKDKVPVLRTSGSDSVEEEVHILDLMNPAGMFKDGVRQRDYDPAKDIPALSG 373
Query: 331 RYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLN 387
+ L R ++ + + + A++ E +DR L
Sbjct: 374 KLLSEFTKRRNIRDMFSKKPAPPKPNPKPTPAVARPDVTAKAEVASTASTVEEQMDRDLA 433
Query: 388 NYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRAR 447
++ + + + + K+ E R SA+ + I +G ++
Sbjct: 434 LAIEASKADMLANTENKLTNSQSPLKSAEKRRASASASPGKPIKRGKPGALA-------- 485
Query: 448 KKAKKSQLGQLSLKSFF--HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
K GQ SLK FF H + S + N+++ S + TDT+ SQ +H
Sbjct: 486 -VPTKGNKGQQSLKGFFQTHSKPADSVEPNDAVPSMS---SFEATDTA-SQNATDMAHPS 540
Query: 506 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
S +++ S D D + + + R W ++ + +
Sbjct: 541 SPS----------------STANKSFDSDPRASQ---ETSREG-----WTKL--FSKKAA 574
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
P C+ H E C+ R KKPG GR+F++C R GP+ + E CG F W
Sbjct: 575 PRCE-HGEHCITRTTKKPGVNCGRQFWICPRPIGPSGHKEVGTQWRCGTFIW 625
>gi|302820744|ref|XP_002992038.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
gi|300140160|gb|EFJ06887.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii]
Length = 654
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 110/230 (47%), Gaps = 75/230 (32%)
Query: 43 QELKSDLVMADGYESFFSCTRTSDKGRTGY----------------------------SG 74
QEL +D+ A ESFFSCTRT KG GY SG
Sbjct: 319 QELTADIATAIS-ESFFSCTRTVKKGCLGYCFALLDWVETLRFRTFLHPWNRNKAHCWSG 377
Query: 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG--------------LEDFSK 120
VATFC+V+ VALPVAAEEGFTG L + ++ EG +E F++
Sbjct: 378 VATFCKVEC---GNNVALPVAAEEGFTGPL--TSARAGEGDKEFWLGSYDPVLTVEGFTR 432
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLN 180
ELL +D+EGRC++TDHGHF+LFN+YGP D R FKL+ VLQ
Sbjct: 433 QELLDLDNEGRCIVTDHGHFVLFNIYGPNVGCGDAERQDFKLK---VLQHVHF------- 482
Query: 181 IAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
N R W S+LV GG+F D FR HPER EAY
Sbjct: 483 -----------------NMSRQWLTSLLVSEGGAFSDAFRVFHPERAEAY 515
>gi|346977469|gb|EGY20921.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium dahliae
VdLs.17]
Length = 550
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 155/370 (41%), Gaps = 98/370 (26%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + D +ADI+ FQETK++R++LK D+V+ G++
Sbjct: 3 RITTWNVNGIRNPFGYQPWREKRTFEAMFDILEADIVIFQETKIQRKDLKDDMVLIPGWD 62
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
+FS K + GYSGV + R P+ AEEG G+L
Sbjct: 63 VYFSLP----KYKKGYSGVVIYTR-------NATCCPIRAEEGILGVLCPPDSTTRFRDL 111
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G E L S + +DSEGRCVI + F+L Y P + D R +F
Sbjct: 112 PEEQQIGGYPTAEQLS--SDIDEATLDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEF 167
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W------ 203
+L + L G+++ + GDLN++ + ID + K + + W
Sbjct: 168 RLGYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSR 227
Query: 204 --FRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F +L E +D+ R HP+R+ +TCW + N G RID+
Sbjct: 228 RLFNQLLFEGQVQGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDY 287
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
+LC+ F+ ++ E L GSDH PV
Sbjct: 288 LLCSAGI--------KDWFIDSNIQEG------------------------LHGSDHCPV 315
Query: 311 YMCLGEVPEI 320
Y LG+ ++
Sbjct: 316 YGTLGDTVKV 325
>gi|26348875|dbj|BAC38077.1| unnamed protein product [Mus musculus]
Length = 260
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 41/220 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 SCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
K++F+ +LQ G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|350645665|emb|CCD59640.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 518
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/429 (27%), Positives = 179/429 (41%), Gaps = 92/429 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I ++N+NGLR S L+ +LDS +DIIC QETK ++ + AD Y +FS
Sbjct: 4 VRICSWNINGLR---SIQHPLKSILDSLTSDIICIQETKTT-PDISREFAFADNYNGYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEV---ALPVAAEEGFTGLLETSGSKIMEGLED 117
+TGYSG A FCR +P T+ + E G ++ +
Sbjct: 60 ----HSIHKTGYSGTAVFCR--NPLKPTKTFHSLNDILVESISCQNNSIDGWGFLKRKLN 113
Query: 118 FSKDELLKIDSEGRCVITDHGH--------------FILFNVYGPRADSEDTVRIQFKLQ 163
S E +D+EGR + I+ ++Y PR + E+ R+ +K
Sbjct: 114 ISHTEARNLDAEGRVLGLQFSTDIFTTFRTPDEIRPLIVLSIYFPRLNPENVERLNYKHL 173
Query: 164 FFHVLQ--------GRRIFVVGDLNIAPAAIDRC---DAGPDFAKNEFRIWFRSMLV--- 209
F +Q + + GD NI ID C + D N FR WF +L+
Sbjct: 174 FQSAVQLCIESLLIENNVVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWFDQLLIGEQ 233
Query: 210 --------ESGG--SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259
S G F D+FR HP R+ A+TCW S T A Q NYG R+D+IL
Sbjct: 234 QDVSLDNQSSVGLRRFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYIL------- 286
Query: 260 QKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 319
D++ +T +++ +I D + + + GSDH P+Y ++P
Sbjct: 287 --FDMKLVEIITT-ISDNNIQAD---------------LMSHINGSDHCPIY---ADLPY 325
Query: 320 ------IPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTG 373
I +S P S Y P + Q L S +M + +K K S++T
Sbjct: 326 FYNSDLIFSYSFPPKCSHYWPQCQKKQMDLESFVMSKSHSKVTKQA-------FTSHNTT 378
Query: 374 DTEDCSENV 382
+ C NV
Sbjct: 379 TSVSCVRNV 387
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 22/171 (12%)
Query: 454 QLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTD 513
Q Q+ L+SF +S+ + +T + +N+ T S V H +
Sbjct: 349 QKKQMDLESFVMSKSH------SKVTKQAFTSHNTTTSVSC----VRNVHSKEKRPAFRQ 398
Query: 514 YSCSVHELHGVNSSVCSHDQD-------EKKGKRFLDKERNNVALLEWRRIQQLMETSIP 566
+ E + +S C +DQ E ++ D + + WR + + P
Sbjct: 399 TKITFREYIPIETSTCIYDQSSSIENTTETLQRKIYDPSKTAQSTEAWRSLFSGPKKP-P 457
Query: 567 LCKGHKEPCVARVVKK----PGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
+C GHKEPCV R VKK G GRRF+VCAR +G + N A C F W
Sbjct: 458 VCLGHKEPCVMRTVKKLKTTKGSRLGRRFWVCARPQGASDNQAARCSTFFW 508
>gi|385145223|emb|CCD57806.1| putative DNA lyase apn2 protein [Neurospora terricola]
Length = 589
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 154/646 (23%), Positives = 245/646 (37%), Gaps = 147/646 (22%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +AD++ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADVVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL---------------ETSGSKIMEGLEDFSKDELLKIDS 128
+ P+ AEEG TG+L + G G DE L +DS
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSTKFRDLPADQQIGGYPTPGQLSSDIDEAL-LDS 108
Query: 129 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGRRIFVVGDL 179
EGRCVI + F+L VY P + D R +F+ F V G+ +F+ GDL
Sbjct: 109 EGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVAMGKEVFLCGDL 166
Query: 180 NIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSFF 216
NI +D AG P+ K E F + +V G +
Sbjct: 167 NIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQVVFGGRVLGEPDEGREKPVLW 224
Query: 217 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNE 276
D+ R HP R YTCW + A N+G+RID++LC FV ++ E
Sbjct: 225 DLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQE 276
Query: 277 CDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPII 336
L GSDH PVY +G+ T S +PI
Sbjct: 277 G------------------------LLGSDHCPVYATIGD--------TVSKDGTTIPIT 304
Query: 337 RGVQQTLVSVLMKREVAKQGKSC------------------------KFSGSLPAESNST 372
+ + +R+ K C K + P ++
Sbjct: 305 DIMNPEGMFKDGQRQREWSQKDCLPTSAKLIPEFDRRQSIKDMFFKKKTPSTTPKSASPA 364
Query: 373 GDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQ 432
D +D S+ + S LQ S+ + + + E + Q
Sbjct: 365 ADGQDTSDPTNTSYTTAHAIAALQEAASSAPSPKQPLSQSTPTEPALSQTSPLPKRRAEQ 424
Query: 433 GSSNHISPFHVDRARKKAKKSQLG----QLSLKSFFHKRS---NVSHDDNNSITDTSLNV 485
+S+ P V A K S++G Q +L FF ++ V+ D+ + S +
Sbjct: 425 PASSIRPPKKVKAAFTKQPSSKIGPGPSQSTLMGFFKPKTPTPTVNPDERPGPLNGSNHY 484
Query: 486 NNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEK-KG 538
++ +T+ E P+ ++ I D + V S +E+ KG
Sbjct: 485 TAAIAETTTRNEPSPAKGSQPKRSFEADDIEEWDEDAVESKTSPVTYKATSAAMEEEGKG 544
Query: 539 KRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPG 584
K D +N + W ++ L + +P C+ H + C + V KKPG
Sbjct: 545 KTIFDPIQNKES---WSKL--LGKRVVPKCE-HGDDCQSLVTKKPG 584
>gi|26349295|dbj|BAC38287.1| unnamed protein product [Mus musculus]
Length = 260
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 41/220 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
K++F+ +LQ G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|26333609|dbj|BAC30522.1| unnamed protein product [Mus musculus]
Length = 266
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 41/220 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
K++F+ +LQ G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|408392228|gb|EKJ71586.1| hypothetical protein FPSE_08225 [Fusarium pseudograminearum CS3096]
Length = 600
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 66/304 (21%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++ T+NVNG+R Q + + + + D +ADI+ QETK+++++L ++V+ G++
Sbjct: 4 RLTTWNVNGIRNPFGYQPWREKRTFQSMFDILEADIVVMQETKIQQKDLLDEMVLVSGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
FFS K + GYSGVA + R P+ AEEG TG+L S
Sbjct: 64 VFFSLP----KHKKGYSGVAIYTR-------NSTCAPIRAEEGITGILTPPKSTTR--YR 110
Query: 117 DFSKDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
D +D+ + +DSEGRCVI + F+LF +Y P + D R F
Sbjct: 111 DLPEDQQIGGYPRPGQLDGIIDEATLDSEGRCVILEFPGFVLFGIYSPA--NRDETRDDF 168
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W------ 203
+L F L G+++ + GDLNI + +D + K F + W
Sbjct: 169 RLGFLQALDVRIRNLVAAGKQVVLTGDLNIVRSEVDSTNVSETLRKGNFDLSEWMNMPAR 228
Query: 204 --FRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F ++ E +D+ R HPER TCW + N G+RID+
Sbjct: 229 RIFNQLIFEGSVLGERDQGRQAPVLWDLCRYFHPERAGMNTCWDTKRNTRPANNGSRIDY 288
Query: 251 ILCA 254
+LC+
Sbjct: 289 VLCS 292
>gi|20071198|gb|AAH26769.1| Apex2 protein [Mus musculus]
Length = 246
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 41/220 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFG---------SLRKLLDSFDADIICFQETKLRRQELKSDLVM 51
+++V++N+NG+R + +LR++LD DADI+C QETK+ R L L +
Sbjct: 2 LRVVSWNINGIRSPLQGLACQEPSSCPTALRRVLDELDADIVCLQETKVTRDVLTEPLAI 61
Query: 52 ADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
+GY S + + R+GYSGVATFC+ + A PVAAEEG +G+ T I
Sbjct: 62 VEGYNS----YFSFSRSRSGYSGVATFCK--------DSATPVAAEEGLSGVFATLNGDI 109
Query: 112 --MEGLEDFSKDELLKIDSEGRCVITDH---------GHFILFNVYGPRADSEDTVRIQF 160
+++F+++EL +DSEGR ++T H L NVY P AD R+ F
Sbjct: 110 GCYGNMDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTF 169
Query: 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
K++F+ +LQ G + ++GDLN A ID CDA
Sbjct: 170 KMRFYRLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDA 209
>gi|164429579|ref|XP_964325.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
gi|157073536|gb|EAA35089.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
Length = 630
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 158/688 (22%), Positives = 264/688 (38%), Gaps = 183/688 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+++ + D+ DADI+ QETK++R++L+ D+V+ G++ +F+ + GYSGVA +
Sbjct: 26 TVKAMFDTLDADIVVIQETKIQRKDLRDDMVLVPGWDVYFNLPTY----KKGYSGVAIYT 81
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGH 139
R + P+ AEEG TG+L S D D+ + + +D
Sbjct: 82 R-------SSKCCPIRAEEGITGVLCPPNSSTK--FRDLPADQQIGGYPTPGQLSSDIDE 132
Query: 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCD 190
L DSE RI+F+ F + G+ +F+ GDLNI +D
Sbjct: 133 AQL--------DSEG--RIEFRQAFIDAMDARVRNLVSLGKEVFLCGDLNIIRNEMDTAG 182
Query: 191 AGPDFAKNEFRI---------WFRSMLVESG------------GSFFDVFRSKHPERREA 229
K + F + +V G +D+ R HP+R
Sbjct: 183 LPEQLKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKPVLWDLCREFHPKRPGM 242
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
YTCW + A N+G+RID++LC+ FV ++ E
Sbjct: 243 YTCWETRKNARPGNFGSRIDYVLCSSGIKDW--------FVDANIQEG------------ 282
Query: 290 NAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP------------------EIPQH 323
L GSDH PVY + + +P E Q
Sbjct: 283 ------------LLGSDHCPVYATISDSVRRDGVIIPITDIMNPEGMFKNGQRQREWSQK 330
Query: 324 STPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVD 383
++R +P +Q++ + +K+ K + P + D++D S++ +
Sbjct: 331 DCLPTSARLIPEF-DRRQSIKDMFVKK---------KTPSNTPKSATPAADSQDISDSPN 380
Query: 384 RSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHV 443
S + +LQG S+S+ S ST T + + SP
Sbjct: 381 TSSITVNATTVLQGTASSASSPR----------------QWLSQSTATDPALSQTSPVPK 424
Query: 444 DRARKKA----------------KKSQLG----QLSLKSFFHKRS---NVSHDDNNSITD 480
RA + A S+ G Q +L F ++ V+ D+ + +
Sbjct: 425 RRAEQPAPYTRPPKKAKAALAKQPSSKTGPGPSQSTLMGFIKAKTPTPTVNPDERHGPIN 484
Query: 481 TSLNVNNSVTDTSLSQEEV------PESHHHSNKIPVTDYSCSVHE----LHGVNSSVCS 530
+ + + +T+L E P+ + + D + H+ +G NS+
Sbjct: 485 GNNHSPVTAAETALRNEPFTAKGSQPKQAFEAGNVEEWDGNAVEHKTNSTTYGENSTAM- 543
Query: 531 HDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRR 590
+DE KGK D +N V+ W ++ L + +P C+ H E C + V KKPG GR
Sbjct: 544 --EDEGKGKTIFDPIQNKVS---WSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGRS 595
Query: 591 FFVCARAEGPASNPEAN----CGYFKWA 614
F++CAR GP+ N E C F W+
Sbjct: 596 FYMCARPLGPSGNKETGTEFRCKTFIWS 623
>gi|407918296|gb|EKG11567.1| Exodeoxyribonuclease III xth [Macrophomina phaseolina MS6]
Length = 1051
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 154/372 (41%), Gaps = 106/372 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFG--------SLRKLLDSFDADIICFQETKLRRQELKSDLVMA 52
++I T+NVNG+R + FG + + D +ADI+ QE K++R++L+ D+V+
Sbjct: 4 LRITTWNVNGIR---NPFGYQPWRDKRTFEAMFDLLEADIVIMQELKIQRKDLRDDMVLV 60
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM 112
G++ FFS K + GYSGVA + R T P+ AEEG G+L GS
Sbjct: 61 PGWDCFFSLP----KHKKGYSGVAIYTR-------TSKCAPIRAEEGLLGVLCPPGSSTP 109
Query: 113 ----------------EGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
+ +E + + +D+EGRCV + F+L VY P + + +
Sbjct: 110 YRDLSPNCHIGGYPTDDQIEQAGRVDPAALDAEGRCVAVEFPAFVLLGVYSPA--NSNGM 167
Query: 157 RIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF------- 200
R F+ FF L +G+R+ + GDLN++ + ID +A + K
Sbjct: 168 RDDFRHAFFSCLDARIRNLTKEGKRVILCGDLNVSRSEIDTANAEDNMRKEGITHEEYIS 227
Query: 201 ---RIWFRSMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNY 244
R F ML GG +D R HP R+ +T W A N+
Sbjct: 228 VGNRRIFNQML--EGGDVVPPRDSGREVPVLWDTCREFHPNRKGMFTHWEQKINARPGNF 285
Query: 245 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 304
G+RID +LC+ I K W + L G
Sbjct: 286 GSRIDFVLCS--------------------------ISMKEWVES------ADIQEGLMG 313
Query: 305 SDHAPVYMCLGE 316
SDH PVY L E
Sbjct: 314 SDHCPVYAILKE 325
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 507 NKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIP 566
N P D +V ++ +S+ D F+D V+ W ++ + S P
Sbjct: 584 NNPPNADDPIAVADITPADST--DLDTSTPASPPFIDP---IVSKESWDKL--FTKPSPP 636
Query: 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
C+ H EPC+ KKPG GR F++C R
Sbjct: 637 RCEDHNEPCITLTTKKPGVNCGRAFWICPR 666
>gi|389646177|ref|XP_003720720.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
gi|351638112|gb|EHA45977.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
70-15]
Length = 656
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 158/366 (43%), Gaps = 96/366 (26%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I ++NVNG+R S + + + + D +ADI+ QE K++R++L+ D+V+ G+
Sbjct: 3 IRITSWNVNGIRNPFSYEPWRENRTFKSMFDILEADIVVIQEAKIQRKDLQDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R + P+ AEEG TG+L S +K E
Sbjct: 63 DVYFSLP----KFKKGYSGVAIYTR-------SSKCSPIRAEEGITGILCPPNSTTKFRE 111
Query: 114 GLED-----FSKDELLK-------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
D + + + L +DSEGRC+I + F+L VY P + D R F+
Sbjct: 112 LSPDQQIGGYPRPDQLSDIIDEATLDSEGRCMILEFPAFVLIGVYSPA--TRDETRTDFR 169
Query: 162 LQFFH----------VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--------- 202
Q FH V G+++ + GDLNI +D K E I
Sbjct: 170 -QAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDTAGILERLRKEEMTIDEFFSTPSR 228
Query: 203 WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F + +V G +D+ R HP+R YTCW + A N+G+RID+
Sbjct: 229 RFLNHMVFGGTVVGGRDEGREEPVMYDLGREFHPDRIGMYTCWETRKNARPGNFGSRIDY 288
Query: 251 ILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPV 310
+LC+ F+ ++ E L GSDH PV
Sbjct: 289 VLCSA--------GMKDWFIDANIQEG------------------------LLGSDHCPV 316
Query: 311 YMCLGE 316
Y L +
Sbjct: 317 YATLSD 322
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 419 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 478
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 454 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 504
Query: 479 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 538
TS+ S T S + + KIP S + G + + + G
Sbjct: 505 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 555
Query: 539 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 556 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 612
Query: 584 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
G GR F++C R GP+ E CG F W+
Sbjct: 613 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 647
>gi|145346298|ref|XP_001417629.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577856|gb|ABO95922.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 474
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 157/355 (44%), Gaps = 69/355 (19%)
Query: 21 LRKLLDSFDAD--IICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78
++ L D+ +D +IC QETKL L +G++ + +S+ R GYSGVA +
Sbjct: 1 MKALFDALGSDLKVICLQETKLSSSGDVERLERVEGWDGAHAVCESSNH-RVGYSGVAVY 59
Query: 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG-LEDFSKD--ELLKIDSEGRCVIT 135
R S E+ P + E G + S + G + F+ D +ID EGR +
Sbjct: 60 WR------SNEI-CPTSIERGVCAKGDAGESTMWAGEIAPFADDATRAKEIDGEGRALWV 112
Query: 136 DHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
D G F+L VY P D + R FK F L+ GR + + GD N
Sbjct: 113 DFGEFVLCTVYVPAVFGDPAVDEKTAERAAFKRDFLSALEARYKSLRERGRNVILCGDWN 172
Query: 181 IAPA-AIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 237
IAP+ +DR D P+ +N R W + L +G + DVFR P +A+TCW +
Sbjct: 173 IAPSWKLDRADEDPNAVEPRNPSRDWLAAQL--AGDAMVDVFREFFPTLGDAFTCWNVAS 230
Query: 238 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 297
GA+ NYG+RID+ LC D + KR + G
Sbjct: 231 GAQLSNYGSRIDYFLC------------------------DRAVTLKRVR-------GVG 259
Query: 298 MSTRLEGSDHAPVYMCLGEV---PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMK 349
++ + EGSDHAPVY+ L E Q + PSLA L G Q T+ S+ +
Sbjct: 260 VAQKFEGSDHAPVYLELEESMWRRRDSQQTPPSLAISML--YPGRQTTVDSIFAR 312
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 557 IQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFKW 613
+ + + P CK H E C R VKK P GR FF C R G +NP+ +CG+F W
Sbjct: 411 MNTFAKMAPPKCK-HGETCKVRTVKKKESPHCGRVFFCCPRPAGARTNPDCDCGFFLW 467
>gi|302419937|ref|XP_003007799.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
gi|261353450|gb|EEY15878.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
Length = 334
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 158/374 (42%), Gaps = 93/374 (24%)
Query: 2 KIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R Q + + + D +ADII FQETK++R++LK D+V+ G++
Sbjct: 3 RITTWNVNGIRNPFGYQPWREKRTFEAMFDILEADIIIFQETKIQRKDLKDDMVLIPGWD 62
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME- 113
+FS + + GYSGV + R P+ AEEG G+L S +K +
Sbjct: 63 VYFSLPKYK---KAGYSGVVIYTR-------NATCCPIRAEEGIFGVLCPPDSSTKFRDL 112
Query: 114 ----------GLEDFSKD-ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL 162
E S D + +DSEGRCVI + F+L Y P + D R +F+L
Sbjct: 113 PKEQQIGGYPTAEQLSSDIDEATLDSEGRCVILEFPAFVLIGTYSPA--NRDESRQEFRL 170
Query: 163 QFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------- 203
+ L G+++ + GDLN++ + ID + K + + W
Sbjct: 171 GYLSALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRL 230
Query: 204 FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
F +L E +D+ R HP+R+ +TCW + N G RID++L
Sbjct: 231 FNQLLFEGQVRGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDYLL 290
Query: 253 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
C+ F+ ++ E L GSDH PVY
Sbjct: 291 CSAGI--------KDWFIDSNIQEG------------------------LHGSDHCPVYG 318
Query: 313 CLGEVPEIPQHSTP 326
LG+ ++ P
Sbjct: 319 TLGDTVKVDGQGCP 332
>gi|116193731|ref|XP_001222678.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
gi|88182496|gb|EAQ89964.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
Length = 646
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 140/304 (46%), Gaps = 66/304 (21%)
Query: 1 MKIVTYN----VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++I T+N V R R ++ SL+ + D+ +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 3 LRITTWNGITAVTLPRAR-TKLTSLQAMFDTLEADIVVMQETKIQRKDLRDDMVLVPGWD 61
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
FFS K + GYSGVA + R + P+ AEEG TG L
Sbjct: 62 VFFSLP----KYKKGYSGVAIYTR-------SSKCCPIRAEEGITGTLCPPNSSTKFQHL 110
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160
+ G L D+ + L DSEGRCVI + F+L VY P + D R +F
Sbjct: 111 PVDQQIGGYPTPGQLSDYVDEPTL--DSEGRCVILEFPAFVLIGVYSPA--TRDETRDEF 166
Query: 161 KLQFFH---------VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--------- 202
+ + + V G+++F+ GDLNI + D K E +
Sbjct: 167 RQAYINAIDVRVRNLVAMGKQVFLCGDLNIIRSEQDTAGLAERLRKEEMTLDDFFSTPSR 226
Query: 203 WFRSMLVESG------------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
F + +V G +D+ R HP R YTCW + A N+G+RID+
Sbjct: 227 CFLNHIVFGGHVAGEREEGREEPVLWDLCREFHPTRPGMYTCWDTRKNARPGNFGSRIDY 286
Query: 251 ILCA 254
+LC+
Sbjct: 287 VLCS 290
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 609
W ++ L + +P C+ H + C V KKPG GR FF+CAR GP+ + E C
Sbjct: 578 WSKL--LGKRVLPRCE-HGDKCQTLVTKKPGVNCGRSFFMCARPLGPSGDKEQGTEFRCR 634
Query: 610 YFKWA 614
F W+
Sbjct: 635 TFIWS 639
>gi|261193611|ref|XP_002623211.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
gi|239588816|gb|EEQ71459.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
Length = 629
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/296 (30%), Positives = 136/296 (45%), Gaps = 56/296 (18%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++ T+NVNG+R S + S + D+ DADI+ FQETK+++++L+ D+V+ +G+
Sbjct: 2 VRLTTWNVNGIRNPFSYHPWREKRSFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGW 61
Query: 56 ESFFSCTRTSD----KGRTGYSGVATFCRVKSPFSSTEV--ALPVAAEEGFTGLLETSGS 109
+ FFS + S + G +G+ SPF S LP A+ G G
Sbjct: 62 DCFFSLPKNSKCCPIRAEEGITGILCLPASVSPFPSPTSFRDLPEEAQIG--------GY 113
Query: 110 KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL- 168
E L S + +DSEGRC+I + F+L VY P + D R F+ F ++L
Sbjct: 114 PTAEQLA-LSDVDASTLDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILD 170
Query: 169 --------QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVE 210
G+R+ V GDLNI + ID A +F R F ++
Sbjct: 171 ARVRNLVAMGKRVIVTGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY- 229
Query: 211 SGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
GG D+ R HP+R YTCW A NYG+RID++LC
Sbjct: 230 -GGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 284
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 450 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 504
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 455 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 504
Query: 505 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 555
N P + +SC + G + S++ D R D N + W
Sbjct: 505 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 561
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 611
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 562 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 619
Query: 612 KWA 614
W+
Sbjct: 620 IWS 622
>gi|425906911|gb|AFY11135.1| DNA lyase [Penicillium roqueforti]
Length = 658
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 138/326 (42%), Gaps = 85/326 (26%)
Query: 1 MKIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + D +ADI+ QETK++R++L+ D+V+ G+
Sbjct: 3 VRITTWNVNGIRNPFSYEPWRGTRTFESMFDILEADIVILQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ +FS R + GYSGV + R P+ AEEG TG+L S
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NATCSPIRAEEGITGVLCPPKSSTSFCS 111
Query: 112 ----------------------MEGLEDFSKDELL-----------KIDSEGRCVITDHG 138
+EG + + E + +DSEGRCVI +
Sbjct: 112 LPEEQQIGGYPTLDQLSRPAMNLEGPDSEEEQEYVSSVPNTTIDAPNLDSEGRCVILEFP 171
Query: 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC 189
F+L VY P E+ R F++ F +VL G+ + V GD+NI+ ID
Sbjct: 172 AFVLIGVYCPAYRDEN--RDTFRMDFLNVLDSRIRNLIAMGKNVVVAGDINISKQGIDAA 229
Query: 190 DA----------GPDFAKNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERRE 228
+F R F ++ + FDV RS HP R
Sbjct: 230 HGIEAIRKGTMTEEEFISAPSRRLFNHLISDGVVIGERDKGREDPVLFDVCRSFHPGRAG 289
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
YTCW A NYG+RID++LC+
Sbjct: 290 MYTCWDQKLNARPGNYGSRIDYVLCS 315
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 16/168 (9%)
Query: 453 SQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVT 512
S GQ L FF R+ +S T + + ++ S T SL+ E +S ++
Sbjct: 489 SAAGQKMLTGFFKPRAVISE-----TTQSPIPLSGSST-PSLNPEPSGQSQEKGKYPEIS 542
Query: 513 DYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKG 570
S + E + S + ++F+D + V+ +W ++ + +P C G
Sbjct: 543 LQSPGLQEESIREEADISTEG--PTARKFIDDTIIDPIVSKEDWSKL--FTKKPVPPCDG 598
Query: 571 HKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
H+EPC+ KKPG GR F++C R GP+ E C F WA
Sbjct: 599 HQEPCIRLTTKKPGMNRGRSFWICPRPLGPSGEKEKGTQWRCPTFIWA 646
>gi|385145207|emb|CCD57793.1| putative DNA lyase apn2 protein [Neurospora pannonica]
Length = 643
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 163/708 (23%), Positives = 263/708 (37%), Gaps = 200/708 (28%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDTLEADIVVMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
+ P+ AEEG TG+L S I D D+ + ++D
Sbjct: 54 ----SSKCCPIRAEEGITGVLCPPNSSIK--FRDLPADQQIGGYPTPGQFSSDIDEAQLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGRRIFVVGD 178
SEGRCVI + F+L VY P + D R +F+ F V G+ +F+ GD
Sbjct: 108 SEGRCVILEFPAFVLIGVYSPA--TRDETRTEFRQAFIDAMDARVRNLVAMGKEVFLCGD 165
Query: 179 LNIAPAAIDRCDAG-PDFAKNEFRIW----------FRSMLVESG------------GSF 215
LNI +D AG P+ K E F + +V G
Sbjct: 166 LNIIRNEMDT--AGLPERLKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGRENPVL 223
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
+D+ R HP R YTCW + A N+G+RID++LC FV ++
Sbjct: 224 WDLCREFHPRRPGMYTCWETRKNARPGNFGSRIDYVLCTSGI--------KDWFVDANIQ 275
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE--------VP--------- 318
E L GSDH PVY +G+ +P
Sbjct: 276 EG------------------------LLGSDHCPVYATIGDSVNKDGATIPITDIMNPEG 311
Query: 319 ---------EIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAES 369
E Q +++ +P +Q++ + KR K + ++ +
Sbjct: 312 MFKDGQRQREWSQKDCLPTSAKLIPEF-DRRQSIKDMFFKR---------KTTSTITKSA 361
Query: 370 NSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHST 429
D +D S+ + S + LQ S+ + + S ST
Sbjct: 362 APAADGQDTSDPTNISSATVNATAALQEAASSAPSPKQS----------------LSQST 405
Query: 430 ITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSV 489
T+ + + SP RA + A + + +K+ K+ + S +
Sbjct: 406 TTEPALSQTSPVPKRRAEQPASSIRPSK-KVKAALTKQPSSKTGPGPSQSTLMGFFKPKT 464
Query: 490 TDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNV 549
+L+ EE P S + +N P T + S Q ++ + +E ++
Sbjct: 465 PTPTLNPEERPASTNGNNHSPAT----IAETITRAEPSPAKGSQPKRPFQTDDIEEWDDD 520
Query: 550 ALLE-WRRIQQLMETSIPLCKGHKEPCVARVVKKPG--------------------PT-- 586
A E W ++ L + +P C+ H E C + V KKPG P+
Sbjct: 521 ANKESWSKL--LGKRVVPKCE-HGEDCQSLVTKKPGINCGMLLLLFFSFLLSDALRPSPP 577
Query: 587 ----------------FGRRFFVCARAEGPASNPEAN----CGYFKWA 614
GR F++CAR GP+ + E C F W+
Sbjct: 578 STTPDDLKLTLDSRLVTGRSFYMCARPLGPSGDKETGTEFRCKTFIWS 625
>gi|302505072|ref|XP_003014757.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
gi|291178063|gb|EFE33854.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
Length = 601
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 158/346 (45%), Gaps = 90/346 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQE K++R++L+ D+V+ G++ +FS R G+ F + +
Sbjct: 1 MFDILEADIVVFQEAKIQRKDLQDDMVLVSGWDCYFSLPRQK-------KGIYVFSKCAA 53
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+ AEEG TG L + G +E +E+ S+ + + +D
Sbjct: 54 ----------IRAEEGVTGALCPPSSRTPFRQLSASEQIGGYPSIEQMEELSEVDPITVD 103
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRC+I + F+L VY P AD ++T R F+L FF++L+ G+R+ + GD
Sbjct: 104 SEGRCLILEFPAFVLIGVYCP-ADRDET-RDDFRLGFFNLLEVRVRNLVKMGKRVILAGD 161
Query: 179 LNIAPAAIDRCDAGPDFAKN-----EF------RIWFRSMLVESGGS------------F 215
LN ID A K E+ RI+ R LV GS
Sbjct: 162 LNTCAGPIDSAPALERIRKGTETEEEYLSYPARRIFNR--LVRPVGSTGDTHDTETLPVL 219
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
D+ R HP R YTCW A NYG+RID+ILC+ +++S FV ++
Sbjct: 220 RDLCREFHPSRTGMYTCWNQKVNARPGNYGSRIDYILCS-------DNIRSW-FVESNIQ 271
Query: 276 ECDIL-----IDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E I+ + Y+ +K + + +GSDH PVY + +
Sbjct: 272 EGLIVCVKLELIYR--------SFKNLLISNEQGSDHCPVYASISD 309
>gi|429862835|gb|ELA37442.1| DNA lyase [Colletotrichum gloeosporioides Nara gc5]
Length = 605
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 153/355 (43%), Gaps = 87/355 (24%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++IVT+NVNG+R Q + + + + D +ADI+ QE K++R++L ++V+ G+
Sbjct: 3 LRIVTWNVNGIRNPFGYQPWREKRTYQAMFDILEADIVIMQECKIQRKDLTDEMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R P+ AEEG G+L GS I
Sbjct: 63 DVFFSLP----KHKKGYSGVAIYTR-------NATCAPIRAEEGILGVLTPPGSSI--PY 109
Query: 116 EDFSKDELLKIDSE-GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL------ 168
D D+ + + RCV+ + F+L Y P + D+ R F+L + + L
Sbjct: 110 RDLPPDQHIGGPAGCRRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDVRVRN 167
Query: 169 ---QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESGGS- 214
QG+ + + GDLN+ +D C+ K + W F ++V GG+
Sbjct: 168 LVAQGKEVILTGDLNVILEELDTCNLREMLRKEGMTVEDWKGMPSRRIFNQLVV--GGNV 225
Query: 215 ------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
D+ R HP+R+ +TCW + N G+RID++LC+
Sbjct: 226 TGARDEGREEPVLHDLTRIFHPDRQGMFTCWDTKRNTRPANNGSRIDYVLCSSGI----- 280
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
F ++ E L GSDH PVY +G+V
Sbjct: 281 ---KDWFTDSNIQEG------------------------LMGSDHCPVYAIIGDV 308
>gi|302919090|ref|XP_003052788.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
gi|256733728|gb|EEU47075.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
Length = 653
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 64/301 (21%)
Query: 5 TYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
T+ VNG+R Q + + + + D +ADI+ QETK++R++L ++V+ G++ FF
Sbjct: 23 TFTVNGIRNPFGYQPWREKRTFQAMFDILEADIVVMQETKIQRKDLHDEMVLVPGWDVFF 82
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + K GYSGVA + R P+ AEEG TG+L + K D
Sbjct: 83 SLPK--HKKVQGYSGVAIYTR-------NSKCAPIRAEEGVTGIL--TPPKSTTKFRDLP 131
Query: 120 KDELL----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
D+ + +DSEGRCVI + F+LF VY P + D R F+
Sbjct: 132 PDQQIGGYPRPGQLDGIIDEATLDSEGRCVILEFPGFVLFGVYSPA--NRDETRDDFRSG 189
Query: 164 FFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------F 204
FF L G+++ + GDLN+ +A+D + K + + W F
Sbjct: 190 FFQALDVRIRNLVADGKQVILTGDLNVVRSAMDSTNVAEMLRKEDISLDDWLNMPVRRIF 249
Query: 205 RSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
++ E +D+ R HPER TCW + N G+RID+ILC
Sbjct: 250 NQLIFEGKVVGERDEGREEPVLWDLCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYILC 309
Query: 254 A 254
+
Sbjct: 310 S 310
>gi|255945069|ref|XP_002563302.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588037|emb|CAP86108.1| Pc20g07790 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 655
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 105/389 (26%), Positives = 155/389 (39%), Gaps = 121/389 (31%)
Query: 2 KIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R S + + D+ +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFSYEPWRGTRTFESMFDTLEADIVILQETKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-----ETSGSKI 111
+FS R + GYSGV + R P+ AEEG TG+L TS +
Sbjct: 64 CYFSLPRV----KKGYSGVVIYTR-------NATCSPIRAEEGITGVLCPPKSPTSFRSL 112
Query: 112 MEGLEDF---SKDELLK-----------------------------IDSEGRCVITDHGH 139
E + + D+L + +DSEGRCVI +
Sbjct: 113 PEEQQIGGYPTSDQLYRPAMNPEGPDPEEEQDDVGSVPDATIDAPTLDSEGRCVILEFPA 172
Query: 140 FILFNVYGP--RADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDR 188
F+L VY P R +S DT F++ F + L G+ + V GD+NI+ ID
Sbjct: 173 FVLIGVYCPAYRDESRDT----FRMDFLNALDARIRNLTAMGKNVVVAGDINISKQGIDA 228
Query: 189 C----------DAGPDFAKNEFRIWFRSMLVES-----------GGSFFDVFRSKHPERR 227
+F R F ++ + D+ RS HP R
Sbjct: 229 AHGIEAIRKGTTTEEEFISAPPRRLFNHLMSDGVVIGERDKGREDPVLLDLCRSFHPHRT 288
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
YTCW A NYG+RID++LC+ LH + N
Sbjct: 289 GMYTCWDQKLNARPGNYGSRIDYVLCS---LHMQDWFSDSN------------------- 326
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
+ L GSDH PVY + E
Sbjct: 327 ----------IQEGLMGSDHCPVYAVIKE 345
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 549 VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN- 607
V+ +W +I + +P C+GH+EPC++ KKPG GR F++C R GP+ E
Sbjct: 577 VSKEDWSKI--FTKKPVPTCEGHQEPCISLTTKKPGMNRGRSFWICPRPLGPSGEKEKGT 634
Query: 608 ---CGYFKWA 614
C F WA
Sbjct: 635 QWRCPTFIWA 644
>gi|308803490|ref|XP_003079058.1| APEX nuclease (ISS) [Ostreococcus tauri]
gi|116057512|emb|CAL51939.1| APEX nuclease (ISS) [Ostreococcus tauri]
Length = 524
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 130/269 (48%), Gaps = 38/269 (14%)
Query: 7 NVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD 66
+ +G + V + G+LR L D + C QETK+ R + + AD ++ S D
Sbjct: 69 DAHGQTRSVPRRGTLRAL--GADVRVACVQETKMSRLDFERRGREAD-WDCAHSACDARD 125
Query: 67 KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL------EDFSK 120
K R+GYSGVA + R + PVA EEG G + S I ED+++
Sbjct: 126 K-RSGYSGVAIYWRSRE-------TCPVAIEEGVCGTRTKAESAIWPNERPPLVDEDYAR 177
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPR----ADSEDTVRIQFKLQFFHVLQ------- 169
+ L D EGR + D G F+L N+Y P D + RI FK F L+
Sbjct: 178 AKAL--DDEGRAIWADFGEFVLCNLYAPTTYGAVDEKVAERIDFKRDFLRALEERLTSLR 235
Query: 170 --GRRIFVVGDLNIAP-AAIDRCDAGPDFA--KNEFRIWFRSMLVESGGSFFDVFRSKHP 224
GRR+ + GD NIAP +DR P KNE R W +L + G DVFR HP
Sbjct: 236 SRGRRVIMCGDWNIAPNWKLDRAHDDPRAVEPKNESREWLTRVLGQDG--MCDVFREVHP 293
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILC 253
+ A+TCW +GA+ +YG+RID+ LC
Sbjct: 294 NVK-AFTCWNVASGAQINDYGSRIDYFLC 321
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 560 LMETSIPLCKGHKEPCVARVVKK-PGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
L + + P C GH E C RVVKK P F R FF C R GP +NP +CG+F W
Sbjct: 463 LAKMAPPKCAGHGETCKVRVVKKRESPHFARVFFCCPRPAGPRTNPACDCGFFAW 517
>gi|165874703|gb|ABY68234.1| DNA lyase [Beauveria bassiana]
Length = 576
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 144/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + G K + G ++ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGILCPPKSNTPYRDLPGDKQIGGYPTLNQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQAIL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GS 214
GDLNI + +D + G K + W +L E
Sbjct: 167 AGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRGRAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISFVTKKPGVNCGRSFYICPR 576
>gi|337734384|gb|AEI72618.1| DNA lyase [Epichloe festucae]
Length = 642
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 135/305 (44%), Gaps = 66/305 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+I T+NVNG+R Q + + + + D ++DI+ QETK++R++L+ D+V+ G+
Sbjct: 4 FRITTWNVNGIRNPFGYQPWREQRTFQSMFDILESDIVVMQETKIQRKDLQDDMVLVPGW 63
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+ FFS K + GYSGVA + R P+ AEEG TG+L +
Sbjct: 64 DVFFSLP----KYKKGYSGVAIYTR-------NATCAPLRAEEGVTGVL--CAPRSTTSF 110
Query: 116 EDFSKDELLK----------------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
D D+ + +DSEGRCVI + F+L VY P + D R
Sbjct: 111 RDLPPDQQIGGYPRPGQLSGAVEEAVLDSEGRCVILEFPAFVLLGVYSPA--NRDESRDV 168
Query: 160 FKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W----- 203
F+ FF L G+ + + GDLN+ + +D + K + + W
Sbjct: 169 FRTSFFEALDVRIRNLVSMGKEVILTGDLNVIRSEMDSTNVLETLRKEDMTLEEWVSLPT 228
Query: 204 ---FRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
F ++ E +D+ R+ HP R TCW + N G+RID
Sbjct: 229 RRIFNQLIFEGSIVGERDEERQEPVLWDLCRNFHPTRLGMNTCWDTKRNTRPANNGSRID 288
Query: 250 HILCA 254
+ILC+
Sbjct: 289 YILCS 293
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 609
W ++ L + +P C+ H+EPC++ V KKPG GR F++C R GP+ E CG
Sbjct: 572 WSKL--LGKRVVPRCE-HEEPCISLVTKKPGVNRGRSFYICPRPLGPSGEKEKGSEWRCG 628
Query: 610 YFKWA 614
F W+
Sbjct: 629 TFIWS 633
>gi|46129427|ref|XP_389065.1| hypothetical protein FG08889.1 [Gibberella zeae PH-1]
Length = 609
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 150/628 (23%), Positives = 235/628 (37%), Gaps = 132/628 (21%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK+++++L ++V+ G++ FFS K + GYSGVA + R
Sbjct: 32 MFDILEADIVVMQETKIQQKDLLDEMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 84
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D +D+ + +D
Sbjct: 85 ----NSTCAPIRAEEGITGILTPPKSTTR--YRDLPEDQQIGGYPRPGQLDGIIDEATLD 138
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCVI + F+L VY P + D R F+L F L G+++ + GD
Sbjct: 139 SEGRCVILEFPGFVLLGVYSPA--NRDETRDDFRLGFLQALDVRIRNLVAAGKQVVLTGD 196
Query: 179 LNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVES-----------GGSFFD 217
LNI + +D + K F + W F ++ E +D
Sbjct: 197 LNIVRSEVDSTNVSETLRKGNFDLNEWMNIPARRIFNQLIFEGSVLGERDQGRKAPVLWD 256
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNEC 277
+ R HPER TCW + N G+RID++LC+ D F ++ E
Sbjct: 257 LCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYVLCS--------DGIKSWFNFSNIQEG 308
Query: 278 DILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------MCLGEVPEIPQHSTPSL-- 328
L GSDH PV+ + GE +P+ P
Sbjct: 309 ------------------------LMGSDHCPVFAIFSDKVIVRGEERALPEMMNPPGMF 344
Query: 329 ----------ASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDC 378
A LP+ + + +R + S + P E + G
Sbjct: 345 HGERRLRDWNAKDLLPL---SAKLIPEFDRRRSIRDMFTKKAASAAPPQEPANPGAATKS 401
Query: 379 SENVDRSLNNYCD-SGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNH 437
S N D + + SG G S+ + GE + + N ++T +S
Sbjct: 402 SMNGDSNSEGIKEKSGGASGPETSAISIPKLGETLGSTKQSVSPLNAKRPGSVTDTTSRP 461
Query: 438 ISPFHVDRARKKAK-KSQLGQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQ 496
+ K K K GQ +L+ FF ++ + D S V S T + +
Sbjct: 462 LKKTKSLVGAKDLKSKVAPGQRTLQGFFKPKAPAAQDGK------SERVAASSTPSPTKK 515
Query: 497 EEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRR 556
V S + P T + + E + S ++ D G+ F E A W +
Sbjct: 516 PTVATRGAASPQQPNTPEAM-LTERSPLRISQRRNEPDS-SGRVFDPIE----AKESWSK 569
Query: 557 IQQLMETSIPLCKGHKEPCVARVVKKPG 584
+ L + P C+ H EPC++ KKPG
Sbjct: 570 L--LGKRVAPRCE-HDEPCISLTTKKPG 594
>gi|320592520|gb|EFX04950.1| DNA lyase [Grosmannia clavigera kw1407]
Length = 795
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 146/369 (39%), Gaps = 102/369 (27%)
Query: 4 VTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
VT+NVNG+R + +L+ + D DADI+CFQE K + L DLV G++SF
Sbjct: 12 VTWNVNGIRNPFKYAPWNNDKTLQAMFDRLDADIVCFQEVKTPKPSLTDDLVFIPGWDSF 71
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIM------ 112
+S + +TGYSGV+ + R +P EEG TG+L G+
Sbjct: 72 YSFPHS----QTGYSGVSVYTR-------DSCCVPTRVEEGVTGVLRAPGTTTRYIDRPA 120
Query: 113 -EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ 163
+ + + L+ ID+EGRC++ D F+L NVY P ++D R F+
Sbjct: 121 DRQIGGYPTERQLQSAAVARDLIDAEGRCLVLDFPLFVLINVYCPARRNDD--RTDFRDA 178
Query: 164 FFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA---------GPDFAKNEFRIWFR 205
F L GR + + GD+N +D A +E + R
Sbjct: 179 FLLALDARVRNLVAAGRHVVLCGDMNTMRHHLDTAAVWGHHGQVLPAEALAFDEDYLSLR 238
Query: 206 SMLV--------------------ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
S + S D R HP+RR YTCW + N+G
Sbjct: 239 SAAIFGRLLFDGDRITNTTTDIPPSSPPILHDACRELHPQRRGMYTCWDTRKNHRPANFG 298
Query: 246 TRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305
+RID +LC S + V + DI +L GS
Sbjct: 299 SRIDFVLC------------SPRLMQLLVIQADI-------------------QPQLLGS 327
Query: 306 DHAPVYMCL 314
DH PVY+ L
Sbjct: 328 DHCPVYVVL 336
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 545 ERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP 604
E N+ A+ W + L + P+C+ H EPC V +KPG GR F++CAR GP
Sbjct: 713 EINDGAMAGWSALG-LGQRQSPMCE-HGEPCKIFVTRKPGVNSGRSFYMCARPPGPLGRR 770
Query: 605 EA----NCGYFKW 613
E C F W
Sbjct: 771 EKGTAWQCTTFFW 783
>gi|402084596|gb|EJT79614.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 550
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 157/368 (42%), Gaps = 98/368 (26%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I ++NVNG+R Q + + + + DS +ADI+ QETK++ ++L+ D+V+ G+
Sbjct: 4 LRITSWNVNGIRNPFAYQPWRENKTYQAMFDSLEADIVIMQETKIQPKDLQDDMVLVPGW 63
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL--ETSGSKIME 113
+ +FS K + GYSGVA + R T P+ AEEG TG+L S ++ +
Sbjct: 64 DVYFSLP----KFKKGYSGVAIYTR-------TSKCCPIRAEEGITGVLCPPNSATRFRD 112
Query: 114 GLED-----------FSKD-ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
D ++D + +DSEGRC+I + F+L VY P A D R F+
Sbjct: 113 LPADCQIGGYPRPGQLTRDVDEATLDSEGRCMILEFPAFVLIGVYSPAA--RDETRTDFR 170
Query: 162 LQFFH---------VLQGRRIFVVGDLNIAPAAIDRCD----------AGPDFAKNEFRI 202
L F V G+ + + GDLNI +D + DF +
Sbjct: 171 LGFQEAMDVRVRNLVAMGKHVVLTGDLNIIRGELDTAGLVDWLRKANMSLDDFLSTPSQR 230
Query: 203 WFRSMLVESGGSFF-------------DVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
++ GG D+ R HP R+ YTCW + A N+G+RID
Sbjct: 231 LLNHLVF--GGVVIGKRDHGRETPVMCDLGREFHPIRQGMYTCWETRRNARPSNFGSRID 288
Query: 250 HILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAP 309
++LC S + V+ G+ L GSDH P
Sbjct: 289 YVLC------------SAGIRSWFVD--------------------AGIQEGLLGSDHCP 316
Query: 310 VYMCLGEV 317
VY L ++
Sbjct: 317 VYATLSDI 324
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CG 609
W +I L + P C+ H EPC + V KKPG GR F++CAR GP+ E + CG
Sbjct: 482 WSKI--LGKRVAPNCE-HGEPCTSLVTKKPGINCGRSFYMCARPLGPSGEKEKDTEWRCG 538
Query: 610 YFKWAFSKSKQK 621
F W+ K K
Sbjct: 539 TFIWSSDWGKSK 550
>gi|171676121|ref|XP_001903014.1| hypothetical protein [Podospora anserina S mat+]
gi|170936126|emb|CAP60786.1| unnamed protein product [Podospora anserina S mat+]
Length = 645
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 145/344 (42%), Gaps = 93/344 (27%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
S+R + D+ +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA +
Sbjct: 28 SIRAMFDTLEADIVVVQEAKIQRKDLQDDMVLIPGWDVYFSLP----KHKKGYSGVAIYT 83
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL--------------- 124
R S++ A P+ AEEG TG+L S D +D+ +
Sbjct: 84 R------SSKCA-PIRAEEGITGILCPPNSSTT--FRDLPEDQQIGGYPRPGQLSGEVDE 134
Query: 125 -KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGRRIF 174
+DSEGRCVI + F+L VY P + D R +F+ F V G+ +
Sbjct: 135 ATLDSEGRCVILEFPAFVLVGVYSPA--TRDESRDEFRHAFTEAMDVRVRNLVAMGKEVV 192
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------G 213
+ GDLNI + +D K E + F + +V G
Sbjct: 193 LTGDLNIIRSELDTAGLVEQLRKEEVSLDDFFSSPSRRFLNQIVFGGRVVGTRDEGREEA 252
Query: 214 SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273
+D+ R HP R YTCW + N+G+RID++LC+ F+ +
Sbjct: 253 VLWDLCREFHPTRTGMYTCWDTRKNCRPGNFGSRIDYVLCSSGI--------KDWFIDAN 304
Query: 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
+ E L GSDH PVY +G+
Sbjct: 305 IQEG------------------------LLGSDHCPVYATMGDT 324
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 20/164 (12%)
Query: 457 QLSLKSFFHKRSNV-SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 515
Q +LKSFF ++ V S + TD N ++ D S + E +P + P
Sbjct: 483 QGTLKSFFKPKTPVPSPSQEPTGTD---NTASATADISTASELLPAELPPEIQSPNQSLK 539
Query: 516 CSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPC 575
S E + + + D+K D N + W ++ L + +P C+ H E C
Sbjct: 540 GSA-ESSAKETPLTTVPTDDK----VFDPIENKAS---WSKL--LGKRVVPKCE-HGEDC 588
Query: 576 VARVVKKPGPTFGRRFFVCARAEGPASNPEAN-----CGYFKWA 614
V+R+ KKPG GR FF+CAR GP+ E C F W+
Sbjct: 589 VSRITKKPGVNCGRSFFMCARPTGPSGKKEDGTTEFCCKTFIWS 632
>gi|62085846|gb|AAX63314.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 145/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|453080166|gb|EMF08218.1| DNA lyase-like protein [Mycosphaerella populorum SO2202]
Length = 659
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 135/308 (43%), Gaps = 67/308 (21%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R S S + D +ADI+ QE K++R++L+ D+V+ DG+
Sbjct: 1 MRLTTWNVNGIRNPFSYPPWNTSRSYSSMFDVLEADIVVMQELKIQRKDLRDDMVLVDGW 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI---- 111
+ +FS K + GYSGV + R P+ AEEG G+L +S + +
Sbjct: 61 DCYFSLP----KHKKGYSGVGIYTR-------NATCSPIRAEEGVLGVLPSSNAGVPYRE 109
Query: 112 ---------------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
L S ++ +D+EGRCVI + F+L VY P + + +
Sbjct: 110 LPEEDAIGGYLNTEQYSHLWQLSGEDPAGLDAEGRCVILEFPAFVLLGVYSPA--NSNGM 167
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKN-----EF-- 200
R F+ F L G+ + +VGDLNI D + K EF
Sbjct: 168 RDGFRYGFLCALDCRIRNLIKSGKNVVLVGDLNITRHESDSASTLEEIRKKQATREEFLA 227
Query: 201 ---RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 246
R F +L++ +D R HP+R+ YT W + A NYG+
Sbjct: 228 GSNRRIFNQLLLDGEVLGERDEGRETAVLWDTTRGFHPDRKGMYTHWDTKINARPGNYGS 287
Query: 247 RIDHILCA 254
RID +L A
Sbjct: 288 RIDFVLVA 295
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCG 609
PLC+GH EPC + + KK G GR F++CAR GP + G
Sbjct: 581 PLCEGHSEPCKSMLTKKKGYNQGRSFWMCARPLGPTGEKDRTTG 624
>gi|62085802|gb|AAX63292.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 145/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|62085782|gb|AAX63282.1| DNA lyase [Beauveria bassiana]
gi|62085784|gb|AAX63283.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 144/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAVGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRGEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|380487093|emb|CCF38266.1| DNA lyase [Colletotrichum higginsianum]
Length = 621
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 139/338 (41%), Gaps = 89/338 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 13 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVFFSLP----KYKKGYSGVAIYTR--- 65
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + L +DSE
Sbjct: 66 ----NATCCPIRAEEGITGILTPPNSSTSFRELPEAQQIGGYPRPGQLPGEVDEATLDSE 121
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCVI + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 122 GRCVILEFPAFVLIGTYSPA--TRDSSRDSFRLGYLNALDARVRNLVAAGKQVILAGDLN 179
Query: 181 IAPAAIDRCDAGPDFAKNEFRI--WFRSM-------LVESG------------GSFFDVF 219
+ ID C+ K + W S LV G +D+
Sbjct: 180 VTRNEIDTCNVREALRKEGMSVEEWMGSPSRRLFNHLVFDGQVAGHRDEGRETPVLYDLT 239
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDI 279
R HP R++ +TCW + N G+RID+ILC+ F ++ E
Sbjct: 240 RVFHPTRQDMFTCWDTKRNMRPANNGSRIDYILCSAGI--------KGWFTDSNIQEG-- 289
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
L GSDH PVY LG+
Sbjct: 290 ----------------------LMGSDHCPVYAVLGDT 305
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWAFSKSKQ 620
+P C+ H EPC+ KKPG GR F++C R G + E CG F W+ K+
Sbjct: 561 VPRCE-HGEPCIIFQTKKPGVNCGRSFYICPRPLGRSGEKEKGTEWRCGTFIWSSDWKKE 619
Query: 621 K 621
+
Sbjct: 620 Q 620
>gi|62085780|gb|AAX63281.1| DNA lyase [Beauveria sp. ARSEF 32]
Length = 579
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 145/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF----------- 215
GDLNI + +D + K + W + L+ G F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 216 -FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|350631687|gb|EHA20058.1| Hypothetical protein ASPNIDRAFT_48146 [Aspergillus niger ATCC 1015]
Length = 575
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 140/326 (42%), Gaps = 79/326 (24%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ FQETK++R++L+ D+V+ G++ +FS R + G SG+ C S
Sbjct: 1 MFDILEADIVVFQETKIQRKDLRDDMVLVPGWDCYFSLPRV----KKGLSGM--LCPPNS 54
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
S E LP + G G +E L D +DSEGRCVI + F+L
Sbjct: 55 SVSFRE--LPENQQIG--------GYPTIEQLSQLEVDAA-TLDSEGRCVILEFPAFVLL 103
Query: 144 NVYGP--RADSEDTVRIQF------KLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGP-- 193
+Y P R +S D+ R F +++ V G+R+FV GDLNI+ ID AG
Sbjct: 104 GIYSPANRDESRDSFRRSFIDLMDARIRNL-VAMGKRVFVTGDLNISRGEIDAAHAGEAI 162
Query: 194 --------DFAKNEFRIWFRSMLV--------ESGGS---FFDVFRSKHPERREAYTCWP 234
+F R +L E G D+ RS HP R+ YTCW
Sbjct: 163 RKGTLTEDEFVSTHARRVLNQLLSDGKVIGEREEGREQPVLHDICRSFHPGRKGMYTCWE 222
Query: 235 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 294
A NYG+RID++LC+ D+Q F ++ E
Sbjct: 223 QRINARPGNYGSRIDYVLCS-------LDMQEW-FCDSNIQEG----------------- 257
Query: 295 KGGMSTRLEGSDHAPVYMCLGEVPEI 320
L GSDH PVY E I
Sbjct: 258 -------LMGSDHCPVYAMFKETVNI 276
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 515 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 567
>gi|62085804|gb|AAX63293.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 145/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L G+++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRI--W-------FRSMLVESGGSF----------- 215
GDLNI + +D + K + W + L+ G F
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTRRILNQLLFKGTVFGDRDDDRERAV 226
Query: 216 -FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|166208515|gb|ABY84902.1| DNA lyase [Beauveria sp. GN-2004a]
Length = 576
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 141/336 (41%), Gaps = 91/336 (27%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA + R
Sbjct: 5 MFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYTR--- 57
Query: 84 PFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELLKIDS 128
P+ AEEG G+L + G K + G ++ DE L +DS
Sbjct: 58 ----NATCAPIRAEEGILGILCPPKSNTLYRDLPGDKQIGGYPTLNQLRGNVDEAL-LDS 112
Query: 129 EGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDL 179
EGR V+ + F+LF VY P + D RI+F+ F L G+++ + GDL
Sbjct: 113 EGRYVVLEFPSFVLFRVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVILAGDL 170
Query: 180 NIAPAAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSFFDV 218
NI + +D + G K + W +L E +D+
Sbjct: 171 NIIRSEMDSSNIGESLRKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRGRAVLWDI 230
Query: 219 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
R HP R +TCW + N G+RID+ILC+ D FV ++ E
Sbjct: 231 CRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNIQEG- 281
Query: 279 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
L GSDH PVY +
Sbjct: 282 -----------------------LMGSDHCPVYATM 294
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596
W ++ L + +P C+ H EPC++ V KKPG GR F++C R
Sbjct: 537 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPR 576
>gi|62085810|gb|AAX63296.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 144/342 (42%), Gaps = 91/342 (26%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
+ + + D +ADI+ QETK++R++L+ D+V+ G++ +FS + + GYSGVA +
Sbjct: 1 TFQAMFDILEADIVIMQETKIQRKDLQDDMVLVPGWDVYFSLP----QHKKGYSGVAIYT 56
Query: 80 RVKSPFSSTEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELL 124
R P+ AEEG G+L + K + G S+ DE L
Sbjct: 57 R-------NATCAPIRAEEGILGVLCPPKSNTPYRDLPVDKQIGGYPTLSQLRGNVDEAL 109
Query: 125 KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR---------RIFV 175
+DSEGRCV+ + F+LF VY P + D RI+F+ F L R ++ +
Sbjct: 110 -LDSEGRCVVLEFPSFVLFGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAASKQVVL 166
Query: 176 VGDLNIAPAAIDRCDAGPDFAK-----NEF-----RIWFRSMLVESG-----------GS 214
GDLNI + +D + K NE+ R +L E
Sbjct: 167 AGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTRRILNQLLFEGTVFGDRDDDRERAV 226
Query: 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
+D+ R HP R +TCW + N G+RID+ILC+ D FV ++
Sbjct: 227 LWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDYILCS--------DGLKSWFVDSNI 278
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
E L GSDH PVY + +
Sbjct: 279 QEG------------------------LMGSDHCPVYATMSD 296
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGP 600
W ++ L + +P C+ H EPC++ V KKPG GR F++C R GP
Sbjct: 536 WSKL--LGKRVVPRCE-HDEPCISLVTKKPGVNCGRSFYICPRPLGP 579
>gi|239613861|gb|EEQ90848.1| DNA lyase Apn2 [Ajellomyces dermatitidis ER-3]
Length = 633
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 124/272 (45%), Gaps = 51/272 (18%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSD----KGRTGYSGV 75
S + D+ DADI+ FQETK+++++L+ D+V+ +G++ FFS + S + G +G+
Sbjct: 30 SFEAMFDALDADIVIFQETKIQKKDLQDDMVLVNGWDCFFSLPKNSKCCPIRAEEGITGI 89
Query: 76 ATFCRVKSPFSSTEV--ALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV 133
SPF S LP A+ G G E L S + +DSEGRC+
Sbjct: 90 LCLPASVSPFPSPTSFRDLPEEAQIG--------GYPTAEQLA-LSDVDASTLDSEGRCM 140
Query: 134 ITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPA 184
I + F+L VY P + D R F+ F ++L G+R+ V+GDLNI +
Sbjct: 141 ILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNILDARVRNLVAMGKRVIVMGDLNICGS 198
Query: 185 AIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS-------------FFDVFRS 221
ID A +F R F ++ GG D+ R
Sbjct: 199 EIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLVY--GGKVIGDRDQGRETPILVDLCRK 256
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
HP+R YTCW A NYG+RID++LC
Sbjct: 257 YHPDRPGMYTCWEQRVNARPGNYGSRIDYVLC 288
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 33/183 (18%)
Query: 450 AKKSQLGQLSLKSFFHKRSN-----VSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHH 504
A ++ GQ +LK FF + + VS DD ++ S +++ P+
Sbjct: 459 ATATRKGQKTLKGFFVPKESSSTTAVSRDDEKGSSNPS----------TMAGASSPQKGT 508
Query: 505 HSNKIPVTDYSCSVHELHGV---------NSSVCSHDQDEKKGKRFLDKERNNVALLEWR 555
N P + +SC + G + S++ D R D N + W
Sbjct: 509 TRNLPPDSSFSCPSGDQCGPEENGRRQLQTADTLSYNGDYDSNGRVHDPIANKES---WS 565
Query: 556 RIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYF 611
++ + P C+GH EPC++ V KK G GR F++C R GP +A C F
Sbjct: 566 KL--FTKKPPPRCEGHNEPCISLVTKKAGINRGRSFWICPRPLGPTGIKKAGDQWRCDTF 623
Query: 612 KWA 614
W+
Sbjct: 624 IWS 626
>gi|330920551|ref|XP_003299056.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
gi|311327471|gb|EFQ92889.1| hypothetical protein PTT_09967 [Pyrenophora teres f. teres 0-1]
Length = 634
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 133/309 (43%), Gaps = 71/309 (22%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R + S + + D +ADI+ QE K++R++L D+V+ G+
Sbjct: 2 VRITTWNVNGIRNPFGYKPWSTTRTFNAMFDILEADIVIMQELKIQRKDLTDDMVLVPGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS K + GYSGV + R V P+ AEEG G L
Sbjct: 62 DCYFSLP----KHKKGYSGVGIYTR-------QSVCAPIRAEEGVLGALCPPNSSTPYRD 110
Query: 105 ---------ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
S S+I D D L DSEGRC++ + F+LF VY P + +
Sbjct: 111 LPGSASIGGYLSASQIASLPPDLDADSL---DSEGRCLVLEFPAFVLFGVYSPA--NSNG 165
Query: 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG----------PDFA 196
R F+L F L+ G+ + + GDLN++ ID A ++
Sbjct: 166 QRDGFRLGFLTALETRIRNLTKMGKNVILTGDLNVSRDLIDTAKAEDNMRAEGMTHAEYL 225
Query: 197 KNEFRIWFRSMLVESG-----------GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYG 245
R F +L+ +D+ R HP+R +T W A N+G
Sbjct: 226 STPNRRIFNQLLLNGNVPGERDQGREEPVLYDLCREFHPDREGMFTHWEQKINARPGNFG 285
Query: 246 TRIDHILCA 254
+RID ILC+
Sbjct: 286 SRIDFILCS 294
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
P C+ H EPC KK G FGR F+VC R GP+ E C F W
Sbjct: 577 PRCE-HGEPCTLYKTKKKGQNFGREFWVCPRPIGPSGVKETGTQWRCPTFTW 627
>gi|86196713|gb|EAQ71351.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|440468556|gb|ELQ37712.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
Y34]
gi|440481166|gb|ELQ61780.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Magnaporthe oryzae
P131]
Length = 626
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/338 (28%), Positives = 142/338 (42%), Gaps = 91/338 (26%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QE K++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVIQEAKIQRKDLQDDMVLVPGWDVYFSLP----KFKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL--ETSGSKIMEGLEDFS------KDELLKI------DSE 129
+ P+ AEEG TG+L S +K E D D+L I DSE
Sbjct: 54 ----SSKCSPIRAEEGITGILCPPNSTTKFRELSPDQQIGGYPRPDQLSDIIDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----------VLQGRRIFVVGDL 179
GRC+I + F+L VY P + D R F+ Q FH V G+++ + GDL
Sbjct: 110 GRCMILEFPAFVLIGVYSPA--TRDETRTDFR-QAFHKAMDARVRNLVAMGKQVVLTGDL 166
Query: 180 NIAPAAIDRCDAGPDFAKNEFRI---------WFRSMLVESG------------GSFFDV 218
NI +D K E I F + +V G +D+
Sbjct: 167 NIIRNELDTAGILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGREEPVMYDL 226
Query: 219 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
R HP+R YTCW + A N+G+RID++LC+ F+ ++ E
Sbjct: 227 GREFHPDRIGMYTCWETRKNARPGNFGSRIDYVLCSA--------GMKDWFIDANIQEG- 277
Query: 279 ILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
L GSDH PVY L +
Sbjct: 278 -----------------------LLGSDHCPVYATLSD 292
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 40/215 (18%)
Query: 419 RDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNVSHDDNNSI 478
+ SA+ + T+ S+++ + VDRA GQ SL FF ++ +S +
Sbjct: 424 KSSASNSRPQKKTKVSTSNTAKNSVDRA--------PGQKSLTGFFKPKNPISTPATDG- 474
Query: 479 TDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKG 538
TS+ S T S + + KIP S + G + + + G
Sbjct: 475 ERTSIRTTPSPTKCS---------NASTPKIPGASTFTSKGDQEGASQGTETGAEPLNGG 525
Query: 539 KRF-LDKERNNVALLE--------------WRRIQQLMETSIPLCKGHKEPCVARVVKKP 583
+ F KE + A L W ++ L + +P C+ H EPC++ KKP
Sbjct: 526 RSFNSGKEDDTGASLSESPKVFDPIENKESWSKL--LKKRIVPKCE-HDEPCISLQTKKP 582
Query: 584 GPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
G GR F++C R GP+ E CG F W+
Sbjct: 583 GINCGRSFYICGRPLGPSGEKEKGTEWRCGTFIWS 617
>gi|169595280|ref|XP_001791064.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
gi|111070752|gb|EAT91872.1| hypothetical protein SNOG_00377 [Phaeosphaeria nodorum SN15]
Length = 635
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 65/305 (21%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R + S+ + + D +AD++ QE K++R++L D+V+ G+
Sbjct: 2 VRITTWNVNGIRNPFGYKPWSEKRTFNAMFDILEADVVVMQELKIQRKDLTDDMVLVPGW 61
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS------ 109
+ +FS K + GYSGV + R V P+ AEEG G+L GS
Sbjct: 62 DCYFSLP----KHKKGYSGVGIYTR-------QSVCAPIRAEEGLLGVLCPPGSTTPYRE 110
Query: 110 ----------KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159
+ D D +D+EGRC++ + F+LF VY P + + +R
Sbjct: 111 LPQDASIGGYPTAAQVADLGVDPA-ALDAEGRCLVIEFPAFVLFGVYSPA--NSNGLRDD 167
Query: 160 FKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAG----------PDFAKNEF 200
F+ F L G+ + + GDLN++ ID A ++
Sbjct: 168 FRYGFLTALDTRIRNLNNMGKNVILTGDLNVSRDLIDTARAEDSMRSEGMTHTEYLSTPN 227
Query: 201 RIWFRSMLVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
R F +L+ +D+ R HP+R YT W A N+G+RID
Sbjct: 228 RRVFNQLLMNGQVPGERDEGREAPVLYDLCREFHPDREGMYTHWEQKINARPGNFGSRID 287
Query: 250 HILCA 254
+LC+
Sbjct: 288 FVLCS 292
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 49/173 (28%)
Query: 456 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYS 515
GQ SLK FF R+N S D+ QEE P +P TD +
Sbjct: 493 GQQSLKGFFQSRTNAS-------------------DSKPGQEETP-------LVPFTDAA 526
Query: 516 CSVHE----------LHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
E G +SS +H Q + + KE W ++ +
Sbjct: 527 VETAENRTSLSQTSNTKGPSSSPPAHVQTDPLASQEASKE-------GWTKL--FSKKPS 577
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
P C+GH EPC+ KKPG GR+F++C+R GP+ E C F WA
Sbjct: 578 PRCEGHAEPCIMLTTKKPGVNCGRQFWMCSRPIGPSGQKETGTQWRCATFIWA 630
>gi|165874707|gb|ABY68236.1| DNA lyase [Beauveria caledonica]
Length = 559
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 138/334 (41%), Gaps = 91/334 (27%)
Query: 28 FDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS 87
+ADI+ QETK++R++L+ D+V+ G++++FS + + GYSGVA + R
Sbjct: 1 LEADIVIMQETKIQRKDLQDDMVLVPGWDAYFSLPQQ----KKGYSGVAIYTR------- 49
Query: 88 TEVALPVAAEEGFTGLL----------ETSGSKIMEGLEDFSK-----DELLKIDSEGRC 132
P+ AEEG G+L + G + + G S+ D+ L +DSEG C
Sbjct: 50 NATCAPIRAEEGILGILCPPKSNTPYRDLPGDQQIGGYPTLSQLRGNVDDAL-LDSEGSC 108
Query: 133 VITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAP 183
V+ + F+L VY P + D RI+F+ F L G+++ V GDLNI
Sbjct: 109 VVLEFPSFVLLGVYSPA--NRDETRIEFRQSFVEALDVRIRNLIAAGKQVIVAGDLNIIR 166
Query: 184 AAIDRCDAGPDFAKNEFRI--W--------FRSMLVESG-----------GSFFDVFRSK 222
+D + K + W +L E +D+ R
Sbjct: 167 NEMDSSNIAESLQKEGISMDEWQSMPTRRILNQLLFEGTVVGDRDDDRERAVLWDICRCF 226
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
HP R +TCW + N G+RID+ILC+ D FV ++ E
Sbjct: 227 HPTRLGMHTCWDAKRKTRPANVGSRIDYILCS--------DGLKSWFVESNIQEG----- 273
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
L GSDH PVY + +
Sbjct: 274 -------------------LMGSDHCPVYATMSD 288
>gi|353237115|emb|CCA69095.1| related to APN2-AP endonuclease, exonuclease III homolog
[Piriformospora indica DSM 11827]
Length = 715
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 132/310 (42%), Gaps = 79/310 (25%)
Query: 37 ETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAA 96
E K ++ L + + Y+ +FS + GYSGVA + +++ + A
Sbjct: 5 ELKTAKRALDASTAVPGKYDGYFSLA-----SKAGYSGVAVY-------TNSHKVRALKA 52
Query: 97 EEGFTGLLE-----------------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGH 139
EEG +G ++ S +M + LL++D EGR ++ D G
Sbjct: 53 EEGLSGGVQPKPPLTPQERVSQTYPAVSRINLMANDDGSIPSSLLELDKEGRALVLDFGM 112
Query: 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQ----------GRRIFVVGDLNIAPAAIDRC 189
F+L NVY ADS D VR +K+ F+++LQ GR + V+GDLN A ID
Sbjct: 113 FVLINVYC-VADSAD-VRYHYKMNFYYLLQERVRILIEEEGREVIVLGDLNSTAAPIDHV 170
Query: 190 DAGPDFAKNEF-----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNY 244
+AG ++ F R W R + G D+ R + P R YTCW + A + NY
Sbjct: 171 EAGLPKYRDVFYEPLHRSWLRDW-ISPVGPLVDIVRERFPTREGMYTCWNTKINAREGNY 229
Query: 245 GTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 304
GTRID IL P L Q V E DI ++G
Sbjct: 230 GTRIDLILIT-PGLRQ------------WVKEADI-------------------QPSIKG 257
Query: 305 SDHAPVYMCL 314
SDH PV++ L
Sbjct: 258 SDHCPVFIDL 267
>gi|317032475|ref|XP_001394977.2| DNA lyase [Aspergillus niger CBS 513.88]
Length = 555
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 42/221 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++I T+NVNG+R S + + D +ADI+ FQETK++R++L+ D+V+ G+
Sbjct: 3 LRITTWNVNGIRNPFSYEPWRGKRTFDAMFDILEADIVVFQETKIQRKDLRDDMVLVPGW 62
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------- 104
+ +FS R + GYSGV + R P+ AEEG +G+L
Sbjct: 63 DCYFSLPRV----KKGYSGVVIYTR-------NATCAPIRAEEGLSGMLCPPNSSVSFRE 111
Query: 105 -----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVR 157
+ G +E L D +DSEGRCVI + F+L +Y P R +S D+ R
Sbjct: 112 LPENQQIGGYPTIEQLSQLEVDA-ATLDSEGRCVILEFPAFVLLGIYSPANRDESRDSFR 170
Query: 158 IQF------KLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAG 192
F +++ V G+R+FV GDLNI+ ID AG
Sbjct: 171 RSFIDLMDARIRNL-VAMGKRVFVTGDLNISRGEIDAAHAG 210
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
PLC+GH+EPC++ KKPG GR F++C R GP+ N E C F WA
Sbjct: 495 PLCEGHQEPCISLTTKKPGINCGRSFWICPRPLGPSGNKEKGTQWRCPTFIWA 547
>gi|410670052|ref|YP_006922423.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
gi|409169180|gb|AFV23055.1| exodeoxyribonuclease III [Methanolobus psychrophilus R15]
Length = 261
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 127/267 (47%), Gaps = 56/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R V + G L + L DI+C QETK ++++L SDL +GY S+FS
Sbjct: 8 IRIISWNVNGIRS-VQKKGFL-EWLQKEQPDILCIQETKAQKEQLGSDLTEVNGYRSYFS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + + P++ + GF
Sbjct: 66 SAE-----KKGYSGVALYTKKE----------PLSIKCGFG------------------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ K DSEGR +I D+G FIL N+Y P + R+ +K++F+ QGR
Sbjct: 92 --IPKFDSEGRILIADYGDFILLNIYFPNGKASPE-RLAYKMEFYDAFLEYALELKKQGR 148
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD+N A ID + + F R W L + + D FRS HPE
Sbjct: 149 KLIICGDVNTAHREIDLARPKENETISGFLPEERAWIDRFLSQ---GYVDTFRSLHPEPG 205
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ YT W +GA N G RID+ +
Sbjct: 206 Q-YTWWSMRSGARTRNVGWRIDYFYVS 231
>gi|384246641|gb|EIE20130.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 283
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 119/267 (44%), Gaps = 83/267 (31%)
Query: 1 MKIVTYNVNGLRQRVSQF--GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
M+IVT+N+NGLR + + G L LL +ADII
Sbjct: 1 MRIVTWNINGLRACLKRRFDGKLINLLQFLEADII------------------------- 35
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
C ++ + E +A +G+ F
Sbjct: 36 --------------------CFQETKLARQEATEDLALADGWDSFFA------------F 63
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV--RIQFKLQFF----HVLQ--- 169
S++EL ++DSEGR V+TDHG F+L NVYGP +E++ R FKL+F+ H +Q
Sbjct: 64 SQEELERLDSEGRVVMTDHGAFVLVNVYGPAISTEESAEERYAFKLRFYEGLLHRIQTLR 123
Query: 170 --GRRIFVVGDLNIAPAAIDRCDAGP--DFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
GR + ++GDLNI+ A ID CD GP F R +L +GG F D
Sbjct: 124 ASGRCVILLGDLNISLAPIDSCDPGPIDAFTSRTDRRLLTRLLTSNGGPFLD-------- 175
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHIL 252
AYTCW + +GA NYGTRID IL
Sbjct: 176 ---AYTCWSTASGARINNYGTRIDLIL 199
>gi|226294616|gb|EEH50036.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb18]
Length = 621
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 131/302 (43%), Gaps = 84/302 (27%)
Query: 12 RQRVSQFG----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDK 67
R R++ G S + D+ +ADI+ FQE K+++++L+ D+V+ +G++
Sbjct: 17 RSRITHGGRSGRSKYAMFDALEADIVIFQEAKVQKKDLQDDMVLVNGWD----------- 65
Query: 68 GRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK------IMEGLEDFSKD 121
YSGV + R P+ AEEG TG+L GS + D ++
Sbjct: 66 ---WYSGVVIYTR-------NSKCCPIRAEEGITGILCPPGSSSTSPFPALTSFRDMPEE 115
Query: 122 ELL-----------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF 164
+ + +DSEGRCVI + F+L VY P + D +R F+ F
Sbjct: 116 QQIGGYPTPEQLALSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAF 173
Query: 165 FHVL---------QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFR 205
+ + G+R+ + GDLNI+ + ID A +F R F
Sbjct: 174 VNAVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFN 233
Query: 206 SMLVESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
++ SGG D+ R HP+RR YTCW A NYG+RID++L
Sbjct: 234 QLV--SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVL 291
Query: 253 CA 254
C+
Sbjct: 292 CS 293
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 456 GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPV-TDY 514
GQ SLK FF + + S D+ + S V++ V V + K P+ Y
Sbjct: 456 GQKSLKGFFGLKGSGSTADDQT---NSPKVSDPVA--------VGNEQQEAAKSPLDITY 504
Query: 515 SCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALL--------EWRRIQQLMETSIP 566
SC + G Q E + N+ ++ W RI + P
Sbjct: 505 SCPPGDGCGPEDDETQGQQQEAAEPLANGGDSNDDCIVHDPIANKESWSRI--FTKKPAP 562
Query: 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 614
C GH EPC++ V KK G GR F++CAR GP+ + + C F W+
Sbjct: 563 RCSGHHEPCISLVTKKAGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 614
>gi|310794037|gb|EFQ29498.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 635
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 152/372 (40%), Gaps = 95/372 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I T+N L Q+ S + + +ADI+ QETK++R++L+ D+V+ G++ FFS
Sbjct: 3 LRITTWNGEWL-----QYTS-EAMFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFS 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-------ME 113
K + GYSGVA + R P+ AEEG TG+L S +
Sbjct: 57 LP----KHKKGYSGVAIYTR-------NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQ 105
Query: 114 GLEDFSKDELLK-------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ + + + L +DSEGRCV+ + F+L Y P D+ R F+L + +
Sbjct: 106 QIGGYPRPDQLPGEVDEATLDSEGRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLN 163
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI--W--------FRSM 207
L G+++ + GDLN+ +D C+ K + W F +
Sbjct: 164 ALDARVRNLVAAGKQVVLTGDLNVIREEMDTCNVREALRKEGMSVEEWMGMPSRRLFNHL 223
Query: 208 LVES-----------GGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ + +D+ R HP R +TCW + N G+RID+ILC+
Sbjct: 224 VFDGRVTGERDEGREAPVLYDLTRIFHPTRLGMFTCWETKRNMRPANNGSRIDYILCSA- 282
Query: 257 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
K W G+ + L GSDH PVY L +
Sbjct: 283 -------------------------GIKDWFTGS------DIQEGLMGSDHCPVYANLAD 311
Query: 317 VPEIPQHSTPSL 328
++ T L
Sbjct: 312 TVKVDGRDTSVL 323
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
+P C+ H EPC+ KKPG GR F++CAR G + E CG F W+
Sbjct: 575 VPRCE-HGEPCIILQTKKPGVNCGRSFYICARPLGQSGQKEKGTEWRCGTFIWS 627
>gi|440793198|gb|ELR14386.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 224
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 118/255 (46%), Gaps = 53/255 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGS-LRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MKIV++NVNGLR V + S L ADIIC QE+K+ + L DL GYE+FF
Sbjct: 1 MKIVSWNVNGLRAIVKKLPSGLGAFFKDIGADIICLQESKITEKMLTDDLTQIPGYEAFF 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + + GYSGV T+ R + + A+EG + E
Sbjct: 61 ATCKM----KQGYSGVCTYAR---------EGITLDAKEGLGVVKE-------------- 93
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QG 170
+D EGR ++TDHG F+L N+Y P R+ FK F + Q
Sbjct: 94 ------MDDEGRVMVTDHGTFVLLNIYFPNG-GRGGDRLTFKSDFQDEVQKYCSELRRQD 146
Query: 171 RRIFVVGDLNIAPAAIDRCDA-GPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHP 224
R + V+GD+NIA +D ++ PD ++ E R W L ESG F D FR +HP
Sbjct: 147 RHVIVLGDVNIAHTELDIYNSDDPDINEHSGFLPEERKWLSGFL-ESG--FVDTFRERHP 203
Query: 225 ERREAYTCWPSNTGA 239
YT W +GA
Sbjct: 204 GEGGHYTWWSPRSGA 218
>gi|399887720|ref|ZP_10773597.1| exodeoxyribonuclease III [Clostridium arbusti SL206]
Length = 254
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 129/267 (48%), Gaps = 56/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M I ++NVNGLR +S+ G + ++ ++ DI+C QETKL+ L +L +GY S+FS
Sbjct: 1 MNIYSWNVNGLRA-ISKKGFF-EFINEYNPDILCIQETKLQLDNLSEELKGIEGYNSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + + GYSGVAT+ + K P++ + G G+E F
Sbjct: 59 CAK-----KKGYSGVATYTKEK----------PISVKYGI-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ +FILFN+Y P +D R+++KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFNNFILFNIYFPNG-QKDEERLKYKLDFYDALLEYLNKLKIEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID +A + + F R W ++ + D FR H +
Sbjct: 142 KLIICGDYNTAHNEIDIKNAKANEKYSGFLPIERAWIDKFIL---NGYVDTFRYIHKDEI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ Y+ W A + N G RID+
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYFFVT 224
>gi|373458129|ref|ZP_09549896.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
gi|371719793|gb|EHO41564.1| exodeoxyribonuclease III Xth [Caldithrix abyssi DSM 13497]
Length = 255
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 127/271 (46%), Gaps = 55/271 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ G + ++ DADIIC QETKL+ +++ +++ Y +++
Sbjct: 1 MKLISWNVNGLRA-VTRNGFIDQV-KKLDADIICLQETKLQNEQIPEEILRLTDYHQYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVATF R + P E G+E F
Sbjct: 59 FAQ-----RKGYSGVATFSRQE----------PAKIEREL-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT + F+LFNVY P D R+ +KL+F+ L G
Sbjct: 89 ------DSEGRVLITHYDSFVLFNVYFPNG-QRDHGRVAYKLEFYAELLKMANALRDAGN 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W L E + D FR +P+ +
Sbjct: 142 KVIITGDFNTAHREIDLKNPKSNQKTSGFLPEERAWIDRYLQE---GWIDTFRHFYPQLK 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
+ YT W A Q N G RID+ + + L
Sbjct: 199 DQYTWWSYRFNARQRNIGWRIDYFMNSENLL 229
>gi|148675567|gb|EDL07514.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_b [Mus musculus]
Length = 402
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 120/264 (45%), Gaps = 59/264 (22%)
Query: 115 LEDFSKDELLKIDSEGRCVITDHG---------HFILFNVYGPRADSEDTVRIQFKLQFF 165
+++F+++EL +DSEGR ++T H L NVY P AD R+ FK++F+
Sbjct: 1 MDEFTQEELRVLDSEGRALLTQHKIRTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFY 60
Query: 166 HVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPD--FAKNEFRIWFRSMLVESG-- 212
+LQ G + ++GDLN A ID CDA F ++ R W +L G
Sbjct: 61 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 120
Query: 213 -----GSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
G F D +R HP+++ A+TCW +GA NYG+R+D++L
Sbjct: 121 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVL--------------- 165
Query: 268 NFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPS 327
+ ++ID + + + GSDH PV L V +P P+
Sbjct: 166 -------GDRALVIDTFQ---------ASFLLPEVMGSDHCPVGAVLN-VSCVPAKQCPA 208
Query: 328 LASRYLPIIRGVQQTLVSVLMKRE 351
L +R+LP G Q ++ L+ E
Sbjct: 209 LCTRFLPEFAGTQLKILRFLVPLE 232
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
+ +PLC GH+EPCV R VKK GP FGR+F++CAR GP S+P + C +F W+
Sbjct: 348 SPMPLCGGHREPCVMRTVKKTGPNFGRQFYMCARPRGPPSDPSSRCNFFLWS 399
>gi|326368806|gb|ADZ55472.1| DNA lyase [Sclerotinia homoeocarpa]
Length = 654
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 135/341 (39%), Gaps = 112/341 (32%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D + DII QE K++R++L+ D+V+ G++ +FS +
Sbjct: 54 MFDILETDIIVMQEAKIQRKDLRDDMVLVPGWDVYFSLPK-------------------- 93
Query: 84 PFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGLEDFSKDELLKID 127
+V P+ AEEG TG+L + G L D+ D +D
Sbjct: 94 ---HKKVCAPIRAEEGITGVLTPPNSTTSFRDLPENEQIGGYPTGAQLSDYFLDAAT-LD 149
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGD 178
SEGRCVI + F+L VY P + D R +F+L F + L +G+R+F+ GD
Sbjct: 150 SEGRCVILEFPAFVLIGVYCPA--NRDESRDEFRLGFLNALDTRVRNLVAEGKRVFLAGD 207
Query: 179 LNIAPAAIDRCDAGPDFAKNEF----------RIWFRSMLVESGGS-------------F 215
LNI ID +A K R F ++V GG
Sbjct: 208 LNIIRDEIDTANAEEQLKKQGITVEQYVSTPARRLFNHLVV--GGRVVGERDEGRETEIM 265
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
+D+ R HPER+ +TCW + N+G+RID++LC+
Sbjct: 266 WDLCRGFHPERKGMFTCWDTKLNTRPGNFGSRIDYVLCS--------------------- 304
Query: 276 ECDILIDYKRWKPGNAPRW--KGGMSTRLEGSDHAPVYMCL 314
K WK W + L GSDH PVY L
Sbjct: 305 --------KEWK-----DWFQDANIQEGLMGSDHCPVYATL 332
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 523 GVNSSVCSHDQDEKKGKRFLDKERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVA 577
G N++ S+D+ +F+ E+ +V A W ++ L + P C+ H +PC++
Sbjct: 549 GGNTTTSSNDEASAMNAKFVLDEQKDVIDPIVAKESWSKL--LKKRVAPKCE-HNDPCIS 605
Query: 578 RVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
V KK G GR F++CAR GP+ E N CG F W+
Sbjct: 606 HVTKKQGINCGRSFYMCARPLGPSGQQEKNTEWRCGTFIWS 646
>gi|50548171|ref|XP_501555.1| YALI0C07436p [Yarrowia lipolytica]
gi|49647422|emb|CAG81858.1| YALI0C07436p [Yarrowia lipolytica CLIB122]
Length = 582
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 151/379 (39%), Gaps = 115/379 (30%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M+ VT+N+ G+ +S + S + AD+IC QETKL+ LK + + GY
Sbjct: 1 MRFVTFNICGINNVLSYHPWNEQRSFEHMFAVLKADVICLQETKLQPHLLKREHALVPGY 60
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK----- 110
+S++S + T + GYSGVA + + +V + AEEG TG L + SK
Sbjct: 61 DSYWSFSNT----KKGYSGVAVYVK-----HGIKV---LKAEEGLTGQLVSPDSKKGLTY 108
Query: 111 ----------------IMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSED 154
+ + + L ++DSEGR ++ D G ++F +Y P +E
Sbjct: 109 QQLYERQRERDGSSKSCIGAYPEGNPQRLFQVDSEGRSLVLDLGFCVVFGLYCPSTATEG 168
Query: 155 TVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR 205
R ++ +F +L+ GR + V+GDLN+A D + K + I
Sbjct: 169 EERDAYRDDYFGLLEERVNLLVEAGREVVVMGDLNVARELYDSAEGMQALHKAK-HITLP 227
Query: 206 SMLVESGGSFFDVF---------------------------------RSKHPERREAYTC 232
++ + G F +VF R+KHP R + YTC
Sbjct: 228 TLGDKEEGRFVEVFEKLNPGQCKSWREAKVGRRVFHRLVPDLLQDSCRNKHPNRPDMYTC 287
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W N+G+RID++L + V + DIL
Sbjct: 288 WNVMMNYRPGNFGSRIDYVLASK---------------GLKVEDADIL------------ 320
Query: 293 RWKGGMSTRLEGSDHAPVY 311
LEGSDH PVY
Sbjct: 321 -------PHLEGSDHCPVY 332
>gi|124441686|gb|ABN11482.1| DNA lyase [Ascosphaera apis]
Length = 533
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 49/262 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L+ D+V+ G++ FFS + G TG +
Sbjct: 1 MFDVLEADIVVLQETKIQRKDLRDDMVLVPGWDCFFSFPKYKKDGITGIN---------- 50
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
P ++ + A E G E + S + +DSEGRCVI + F+L
Sbjct: 51 PSTTKDTAFRDLPSH------EQIGGYPSEEQLNLSLVDAETLDSEGRCVILEFQAFVLI 104
Query: 144 NVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA--- 191
VY P +E +R F+L F V + G+RI V GDLNI+ D A
Sbjct: 105 GVYLPAVRNE--LRDDFRLGFLRVFECRVRNLIALGKRIIVAGDLNISRDVQDSASALAD 162
Query: 192 --GPDFAKNEF-----RIWFRSMLVESGG------------SFFDVFRSKHPERREAYTC 232
G ++ ++ R F ++ +S +D+ R HP R+ +TC
Sbjct: 163 VLGERLSREQYISTPSRALFNELVTDSSDYDSSEPNNNAQCVLWDICRDFHPSRKGMFTC 222
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W T A N+G+RID+ILC+
Sbjct: 223 WDMKTNARPGNFGSRIDYILCS 244
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 538 GKRFLDKERNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 597
G+++ +++ + W I P C+GH EPC++ V KK G GR F++C R
Sbjct: 441 GEKYDRYSKDDDTIKAWANI--FTPQQAPSCEGHGEPCISLVTKKAGLNQGRSFWMCPRP 498
Query: 598 EGPASNPEAN----CGYFKW 613
GP+ + E C F W
Sbjct: 499 LGPSGSAEKGTQWRCATFIW 518
>gi|258573517|ref|XP_002540940.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
gi|237901206|gb|EEP75607.1| hypothetical protein UREG_00453 [Uncinocarpus reesii 1704]
Length = 499
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 146/584 (25%), Positives = 218/584 (37%), Gaps = 165/584 (28%)
Query: 91 ALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLK-----IDSEGRCVITDHGHFILFNV 145
+LP + T E S + G +F + ELL IDSEGRCVI + F+L V
Sbjct: 12 SLPKQKKGSTTPYRELSKDDQIGGYPNFEQLELLSFDPKTIDSEGRCVILEFPAFVLLGV 71
Query: 146 YGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNI---------APAAID 187
Y P + D R F+ F + L G+R+ V+GDLN+ A AI
Sbjct: 72 YCPA--NRDENRDAFRSDFLNALDMRVRNLIAIGKRVIVMGDLNVSSDILDSAHAIEAIR 129
Query: 188 RCDAGP-DFAKNEFRIWFRSMLVESGGS-----------FFDVFRSKHPERREAYTCWPS 235
+C +F + R+ F + LV+ G D+ R+ HP R+ YTCW
Sbjct: 130 KCKLTELEFLSSPPRLLF-NQLVKGGKPGTHEIEQKPQVLLDLCRNFHPNRQGMYTCWEQ 188
Query: 236 NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 295
A NYG RID++LC+ D++ FV + E
Sbjct: 189 RINARPGNYGARIDYVLCS-------MDMEDW-FVWSDIQEG------------------ 222
Query: 296 GGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 355
L GSDH PVY + + RY R +++ ++ V
Sbjct: 223 ------LMGSDHCPVYALIKDT------------VRY----RDADRSIWDIVNPPGVFHA 260
Query: 356 G--------KSCKFSGSLPAESNS--------TGDTEDCSENVDRSLNNYCDSGILQGVY 399
G S SG L E + + SE + R+ + + LQ +
Sbjct: 261 GLRKQPAILTSLPLSGRLIPEFHRRRSLKEMFQAKSTPASELMGRAPDLPHNPRSLQQLK 320
Query: 400 C--SSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQ 457
S+ N +G A+ A + T + +N ISP V R+RK
Sbjct: 321 SPDSAWNDGVKG------------ASTADYQTAKRTPANKISPRPVKRSRK--------- 359
Query: 458 LSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCS 517
+ DTS N+ S Q+ + H +IP T S +
Sbjct: 360 --------------------LVDTSSNL-------SKGQQTL---AHFMEQIPPTQISKA 389
Query: 518 VHELHGVNSSVCS--HDQDEKKGKRFLDKER--NNVALLEWRRIQQLMETSIPLCKGHKE 573
+ +N C ++ K +R + E + A W ++ + P C+GH E
Sbjct: 390 ANYDVTLNDPGCVPLANKSSFKERRTISTENTPDPAAKESWAKL--FTRKAPPRCEGHNE 447
Query: 574 PCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKW 613
PC+ V KK GP GR F++C R GP+ + E C F W
Sbjct: 448 PCIVLVTKKAGPNCGRSFWICPRPLGPSGDKEIGTPWRCPTFIW 491
>gi|384498310|gb|EIE88801.1| hypothetical protein RO3G_13512 [Rhizopus delemar RA 99-880]
Length = 359
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 135/304 (44%), Gaps = 69/304 (22%)
Query: 49 LVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETS- 107
+ + GY+++FS + K + GYSGV+ + + +E+ LP A+ EG TG+L+
Sbjct: 1 MALVPGYDAYFSFS----KAKLGYSGVSVYVK-------SEIGLPKASLEGITGILQNRP 49
Query: 108 -GSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH 166
+ ++ L+ + +D+EGRC+I + +L N+Y P SE R +F + ++
Sbjct: 50 FDADFLKTLQTPAD----ALDAEGRCIILEFECLVLINIYFPNFASE--ARGEFIMDYYG 103
Query: 167 VLQ---------GRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLV 209
+Q G+++ +VGD+N ID CD DF R W L+
Sbjct: 104 CVQKRIEDYLAKGQQVVLVGDVNAVHDTIDHCDPKESMRQHGLKDFKDLPHRRWV-DRLI 162
Query: 210 ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 269
GS D+ R HP+R+ +TCW + A NYGTRID++L + H LQ F
Sbjct: 163 GPQGSMIDMARYYHPDRKGMFTCWNTRINARPANYGTRIDYVLAS-------HGLQP-RF 214
Query: 270 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 329
V + ++ GSDH PVY PE + + P
Sbjct: 215 VYADIQ------------------------PQIIGSDHCPVYADFAIDPEQMRCAQPDTT 250
Query: 330 SRYL 333
S L
Sbjct: 251 SPLL 254
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN--CGYF 611
W + Q E P C GH PC+ R V K G GR F+VC++ GP P+ + C +F
Sbjct: 297 WSALFQAPER--PRCSGHDAPCLERTVTKKGKNLGRTFYVCSKPVGPQDGPKEHYSCHHF 354
Query: 612 KW 613
W
Sbjct: 355 SW 356
>gi|295663072|ref|XP_002792089.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279264|gb|EEH34830.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides sp.
'lutzii' Pb01]
Length = 570
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 149/636 (23%), Positives = 226/636 (35%), Gaps = 175/636 (27%)
Query: 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL---ETSGSKIMEGLEDF---------- 118
YSGV + R P+ AEEG TG+L +S + L F
Sbjct: 10 YSGVVIYTR-------NSKCCPIRAEEGITGILCPPASSSTSPFPALTSFREMPEEQQIG 62
Query: 119 ----------SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL 168
S + +DSEGRCVI + F+L VY P + D +R F+ F + +
Sbjct: 63 GYPTPEQLALSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAV 120
Query: 169 ---------QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV 209
G+R+ + GDLNI+ + ID A +F R F ++
Sbjct: 121 DARVRNLVDMGKRVILTGDLNISGSEIDSARALEEIRKSTTTNSEFVSAPVRRIFNQLV- 179
Query: 210 ESGGS-------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
SGG D+ R HP+RR YTCW A NYG+RID++LC+
Sbjct: 180 -SGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRIDYVLCS-- 236
Query: 257 CLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316
+ F ++ E L GSDH PVY + +
Sbjct: 237 ------LIMRDWFCASNIQE------------------------GLMGSDHCPVYADIKD 266
Query: 317 VPEIP-----------------------QHSTPS---LASRYLPIIRGVQQTLVSVLMKR 350
+ ++ST L+ R +P Q+ + ++ R
Sbjct: 267 KVSLDNMEVHILDILNPEGMFVNGERKREYSTADVLPLSGRLIPEF--CQRRSIKDMLFR 324
Query: 351 EVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGE 410
+ +K G+ + NS G T D N + G S++ G
Sbjct: 325 QSSK--------GASQGDVNSAGVTNPPVPQKDTLGTN------ISGPASPSTSTTPWGP 370
Query: 411 FTKTIENCRDSANVASHSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFFHKRSNV 470
T D + + + S+ I+ AR K +K SLK FF + +
Sbjct: 371 STPKRSQQGDDGTTSRSKRLKRSQSSAIA-----TARTKGQK------SLKGFFGLKGSG 419
Query: 471 SHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCS 530
S D+ + + V+D + E E+ I YSC + G
Sbjct: 420 STADDQTNSP-------KVSDPAAVGNEQQEAAKSPLDI---TYSCPPGDGCGPEDDGTQ 469
Query: 531 HDQDEKKGKRFLDKERNNVALLE--------WRRIQQLMETSIPLCKGHKEPCVARVVKK 582
Q E + N+ ++ W RI + P C GH EPC++ V KK
Sbjct: 470 GQQQETAEPLANGGDSNDDCIVHDPIANKELWSRI--FTKKPAPRCSGHHEPCISLVTKK 527
Query: 583 PGPTFGRRFFVCARAEGPA----SNPEANCGYFKWA 614
G GR F++CAR GP+ + + C F W+
Sbjct: 528 AGINCGRSFWICARPLGPSGVKKTGDQWRCDTFIWS 563
>gi|440780818|ref|ZP_20959289.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221406|gb|ELP60611.1| exodeoxyribonuclease III [Clostridium pasteurianum DSM 525]
Length = 254
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 143/326 (43%), Gaps = 86/326 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR VS+ G + + + DI+C QETKL+ + L +L Y S+FS
Sbjct: 1 MKIYSWNVNGLRA-VSKKGFF-EFVSYENPDILCIQETKLQLETLSEELKNIKEYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVAT+ + K PV+ + G G+E F
Sbjct: 59 FAE-----RKGYSGVATYTKKK----------PVSIKHGI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR +IT+ FILFN+Y P +D R+ +KL+F+ L + +
Sbjct: 89 ------DKEGRILITEFNEFILFNIYFPNG-QKDEERLNYKLEFYDALFEYLDKLKIEDK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 228
+I + GD NIA ID +A + + F R ++ + G + D FRS H E +
Sbjct: 142 KIIICGDYNIAHREIDIKNAKANEKISGFLPIERKLIDKFISKG--YVDTFRSIHREEIK 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
Y+ W A + N G RID+ L L +V E DIL D
Sbjct: 200 -YSWWSYRFKARERNAGWRIDYFLVTENLLE-------------NVKEADILND------ 239
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ GSDH PV + L
Sbjct: 240 -------------VMGSDHCPVSILL 252
>gi|367010570|ref|XP_003679786.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
gi|359747444|emb|CCE90575.1| hypothetical protein TDEL_0B04460 [Torulaspora delbrueckii]
Length = 522
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 110/379 (29%), Positives = 150/379 (39%), Gaps = 105/379 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
M++VT+NVNGLR Q S SL K+ D FD+DII QE K R + + G
Sbjct: 16 MRLVTFNVNGLRTLFHYQPFSDLNQSLEKVFDYFDSDIITLQELKTDRPSI-TKWGKVPG 74
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S + + GYSGV + R+ AL V AEEG TGLL K
Sbjct: 75 FYSFISIP----QAKRGYSGVGCWVRILPDDHPMAEALKVTKAEEGITGLLSIKTGKSST 130
Query: 114 ----------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
GL+D + E LK+DSEGRCV+ + + I+ NVY P
Sbjct: 131 SYRDDPNIGIGGYESLGLDDEDESEGLKLDSEGRCVMIELACNIIVINVYCPANSGLSAE 190
Query: 157 RIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRC------------------ 189
F++++ VL G+R+ ++GD+N+ ID
Sbjct: 191 GSAFRMKYLKVLFKRIRNLSEMGKRVILMGDVNVCRDLIDHAEGLEQASIRIGDGVSGSK 250
Query: 190 ------DAGPDFAKN---EFRIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTC 232
DA F N R ML +S GG D R + +R +AYT
Sbjct: 251 IESKHRDACEQFIINPDTPHRRMLNQMLADSILPEFAEGGILLDTTRLIQGRDRLKAYTV 310
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W + + NYG+RID IL + + +V DIL
Sbjct: 311 WNTLKNSRPVNYGSRIDFILAS-------------KSLKTNVTSADIL------------ 345
Query: 293 RWKGGMSTRLEGSDHAPVY 311
+ GSDH PVY
Sbjct: 346 -------PEVTGSDHCPVY 357
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H + R + P GR+F++C +G + + ++CG+F+WA
Sbjct: 476 PLCK-HGLKAIQRTSRTPS-NPGRKFWICKLPKGSSDDESSSCGFFQWA 522
>gi|154291711|ref|XP_001546436.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
Length = 578
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 51/248 (20%)
Query: 29 DADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSST 88
+ DI QETK++R++L+ D+V+ G++ +FS K + GYSGVA + R
Sbjct: 4 EEDIFLMQETKIQRKDLRDDMVLVPGWDVYFSLP----KYKKGYSGVAIYTR-------N 52
Query: 89 EVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL-----------------KIDSEGR 131
V P+ AEEG TG+L S D KD+ + +DSEGR
Sbjct: 53 SVCAPIRAEEGITGVLTPPNSTT--SFRDLPKDQQIGGYPTGAQLQDYFLDAATLDSEGR 110
Query: 132 CVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR-----RIFVVGDLNIAPAAI 186
CVI + FIL VY P + D R +F++ F + L R + + G L I+
Sbjct: 111 CVILEFPAFILIGVYCPA--TRDETRDEFRIGFLNALDTRWSNTYQPLLAGYLIISLVG- 167
Query: 187 DRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGT 246
+ D +W D+ R HP R+ +TCW A N+G+
Sbjct: 168 GKVIGDRDEGTEPQVMW-------------DISRGFHPTRKGMFTCWDQKMNARPGNFGS 214
Query: 247 RIDHILCA 254
RID++LC+
Sbjct: 215 RIDYVLCS 222
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 535 EKKGKRFLDKERNN--VALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFF 592
EK K DKE ++ VA W + L+ IP HKEPC++ + KK G GR F+
Sbjct: 480 EKTCKSRQDKEVHDPIVAKESWSK---LLTKRIPPKCEHKEPCISHITKKQGINRGRSFY 536
Query: 593 VCARAEGPASNPEAN----CGYFKWA-FSKSK 619
+C R GP+ E N C F W+ SKS+
Sbjct: 537 MCPRPLGPSGQQEKNTEWRCNTFIWSTLSKSE 568
>gi|119192056|ref|XP_001246634.1| hypothetical protein CIMG_00405 [Coccidioides immitis RS]
Length = 551
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 42/219 (19%)
Query: 2 KIVTYNVNGLRQRVSQ-----FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
++ T+NVNG+R S S + + D +ADII QE K++R++L+ D+V+ G++
Sbjct: 4 RLTTWNVNGIRNPFSYEPWRGTQSFQGMFDLLEADIIVLQELKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----ETSGSKIM 112
FFS K + GYSGVA + R P+ AEEG TG+L TS + +
Sbjct: 64 CFFSLP----KYKKGYSGVAIYTR-------NATCSPIYAEEGVTGILCPPNSTSSYREL 112
Query: 113 ---EGLEDFSKDELLK--------IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E + + DE L +DSEGRCVI + F+L VY P + D R F+
Sbjct: 113 PESEQIGGYPTDEQLSTSELSAETLDSEGRCVILEFPAFVLLGVYCPA--NRDETRDGFR 170
Query: 162 LQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
L F + L G+R+ V GDLNI+ ID A
Sbjct: 171 LGFLNALDHRIRNLISLGKRVVVAGDLNISRDEIDSAHA 209
>gi|354546880|emb|CCE43612.1| hypothetical protein CPAR2_212560 [Candida parapsilosis]
Length = 481
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 143/324 (44%), Gaps = 76/324 (23%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ +T+NVNG++ + + D +ADII QE KL Q L + ++
Sbjct: 21 IRFITFNVNGIKTVFNYHPWNKINNDFNTMFDLLEADIITLQELKLTEQSLTTLKNIGHL 80
Query: 53 DGYESFFSC-TRTSDKGRTGYSGVATFCRV-KSPFSSTEVALPVAAEEGFTGLL-ETSGS 109
Y+SF S TR + GYSGV F R+ ++P + + AEEG TG L + +G+
Sbjct: 81 QSYKSFISLPTR-----KKGYSGVGLFVRIPQTPLQKRYLTV-TKAEEGLTGWLCDKTGN 134
Query: 110 KI------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKL 162
+ G D ++ + L IDSEGRCV+ + + ++F +Y P S +F+L
Sbjct: 135 PYRSQDDNIGGYTDINEQQGLHIDSEGRCVVVELASNCVVFALYCPANSSGTDEGEEFRL 194
Query: 163 QFFHVL----------QGRRIFVVGDLNIAPAAIDRCDA---------------GPDF-- 195
QF L +G+ + ++GD+N+ ID + G F
Sbjct: 195 QFLQQLMKRCHNLKFNEGKDVIIMGDINVCLDLIDSAEGINERIMAKQITDVSDGNQFEV 254
Query: 196 -----------------AKNEFRIWFRSMLVE------SGGSFFDVFRSKHPERREAYTC 232
NE+ I RSM+ E + +D R RR+ YT
Sbjct: 255 ANYDECCKFKQSKRARELMNEYVI--RSMIQECTSQTLTNQFLYDTTRYIQGRRRKMYTV 312
Query: 233 WPSNTGAEQFNYGTRIDHILCAGP 256
W + T + Q NYG+RID ILC+ P
Sbjct: 313 WNTLTNSRQVNYGSRIDLILCSSP 336
>gi|170759835|ref|YP_001786903.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169406824|gb|ACA55235.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 253
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSM-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ +F L N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFKNFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|168182409|ref|ZP_02617073.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
gi|182674470|gb|EDT86431.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
Length = 253
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 139/297 (46%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|448513794|ref|XP_003867011.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
gi|380351349|emb|CCG21573.1| Apn2 class II abasic (AP) endonuclease [Candida orthopsilosis Co
90-125]
Length = 473
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 150/365 (41%), Gaps = 96/365 (26%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ VT+NVNG++ + + D AD+I QE KL Q L + ++
Sbjct: 21 IRFVTFNVNGVKTVFNYHPWNKIDNDFNTMFDLLQADVITLQELKLTEQSLSTLKNIGHL 80
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRV-KSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
Y+SF S + GYSGV F R+ K+P + + V AEEG TG L K
Sbjct: 81 KDYKSFISLP----TKKKGYSGVGLFVRIPKTPLQQKYLTV-VKAEEGLTGWLADKSGKS 135
Query: 112 -------MEGLEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVRIQFKLQ 163
+ G D + + L+IDSEGRCV+ + + ++F +Y P S +F+L+
Sbjct: 136 YRLQNDNIGGYTDIDEKQGLQIDSEGRCVVVELVNNCVVFALYCPANSSGTDEGEEFRLR 195
Query: 164 FFHVL----------QGRRIFVVGDLNIAPAAIDRCDAGPD--FAK-------------- 197
F L QG+ + ++GD+N+ ID + D AK
Sbjct: 196 FLQQLLKRCHNLKFKQGKDVIIMGDINVCLDLIDSAEGINDRLVAKQITDISDGCSFELA 255
Query: 198 ------------------NEFRIWFRSMLVE-----SGGSF-FDVFRSKHPERREAYTCW 233
N + I RSM+ E SG F +D R R++ YT W
Sbjct: 256 NYNECCKFKQSRRARELMNAYVI--RSMVQERIDATSGDQFLYDTTRYIQGRRKKMYTVW 313
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN-----------ECDILID 282
+ T + Q NYG+RID ILC+ S + + C N C + D
Sbjct: 314 NTLTSSRQVNYGSRIDLILCS-----------SQDMLKCVSNADIWPFILGSDHCPVFTD 362
Query: 283 YKRWK 287
+ WK
Sbjct: 363 FDPWK 367
>gi|187779869|ref|ZP_02996342.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
gi|187773494|gb|EDU37296.1| exodeoxyribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 253
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 56/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P++ + G G+E F
Sbjct: 59 FAH-----KKGYSGVATYTKEE----------PISVKHGI-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVEEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YIDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
+ Y+ W A + N G RID+ + L + + + N V
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEV 240
>gi|385809097|ref|YP_005845493.1| exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
gi|383801145|gb|AFH48225.1| Exodeoxyribonuclease III [Ignavibacterium album JCM 16511]
Length = 262
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 124/267 (46%), Gaps = 55/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++ ++NVNG+R V + G + +L + DI+C QETK +L +L+ +GY+SFFS
Sbjct: 4 IRLYSWNVNGIRA-VHKKGFVDWVLKE-NPDILCLQETKAHPDQLPKELISINGYQSFFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
S K + GYSGVA + ++ PV + GF
Sbjct: 62 ----SSKVKKGYSGVAVYSKLN----------PVDVKYGF-------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGR 171
++ + D EGR +I D+ FILFN+Y P D R+++KL F+ + QGR
Sbjct: 88 -DIPRFDDEGRTLILDYKEFILFNIYFPNGKMSDE-RLKYKLDFYDAFLEYAKKLIQQGR 145
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+I V GD+N A ID + + F R W L F D FR + ++
Sbjct: 146 KIIVCGDVNTAHKEIDLARPKENEKTSGFLPIERQWIDKFL---ANGFVDTFRMFN-DQP 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W T A + N G RID+ +
Sbjct: 202 GNYTWWDMQTRARERNVGWRIDYFFVS 228
>gi|224371156|ref|YP_002605320.1| ExoA protein [Desulfobacterium autotrophicum HRM2]
gi|223693873|gb|ACN17156.1| ExoA [Desulfobacterium autotrophicum HRM2]
Length = 262
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 138/322 (42%), Gaps = 83/322 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++V++NVNGLR V + K ++ DAD++ QETKL + ++++ DGY+S ++
Sbjct: 6 LRLVSWNVNGLRAAVKK--DFLKSMEQLDADVLMLQETKLSEDQRTDEMLLVDGYDSHWA 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + R +P+A G G+E F
Sbjct: 64 YSSV----KKGYSGVAAYTR----------PVPLAVAPGI-------------GIERF-- 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR + D FILFNVY P D R+Q+K+ F+ +GR
Sbjct: 95 ------DNEGRILELDFEDFILFNVYFPNGQMSDE-RLQYKMDFYEAFFAHADRLRKKGR 147
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERRE 228
+ + GD N A ID + P+ ++ F R + LVE G + D FR +P+ +
Sbjct: 148 SLVITGDFNTAHNEIDLKNPKPNSKRSGFLPVEREVLDRLVERG--YVDTFRHFNPDTVK 205
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
Y+ W A N G RID+ D+ +VT + DIL
Sbjct: 206 -YSWWSYRFNARANNAGWRIDYFFVT-------QDIIDKGWVTRTFIDNDIL-------- 249
Query: 289 GNAPRWKGGMSTRLEGSDHAPV 310
GSDH PV
Sbjct: 250 ---------------GSDHCPV 256
>gi|307109978|gb|EFN58215.1| hypothetical protein CHLNCDRAFT_142087 [Chlorella variabilis]
Length = 483
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 123/276 (44%), Gaps = 59/276 (21%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
MK++ +N+N L R V + GS DI C QE+K+ +L +L DGY+
Sbjct: 1 MKLLCWNINSLAPTVRNAVLKHGSWLGFFQEHGLDIACLQESKVPEDKLTKELCCVDGYQ 60
Query: 57 SFFSCTRTSDKGRTGYS-------GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS 109
SF++ +R +GR G++ A CR K +S
Sbjct: 61 SFWAHSR---QGR-GHAPDIPPGPAAAQRCREKKGYS----------------------- 93
Query: 110 KIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRA-DSEDTVRIQFKLQFFHVL 168
G+ ++ D + +ITDHG F+L NVY P A D D R+ +KL+F L
Sbjct: 94 ----GVTTYASDAYAPL-----VLITDHGAFVLVNVYVPNAGDRPDRPRLHYKLRFLAAL 144
Query: 169 Q---------GRRIFVVGDLNIAPAAID-RCDAGPDFAKNE-FRIWFRSMLVESGGSFFD 217
+ GR + +VGD N+ A D D P + +E + R+ L ++ D
Sbjct: 145 RRKCEELAVAGRELLLVGDFNVPAEARDVHPDLLPGGSLDELYGQEERAALHALTAAYPD 204
Query: 218 VFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
V+R HP+ Y+ W T A FN G RID++LC
Sbjct: 205 VWRRLHPQEAATYSVWNEKTSARAFNRGLRIDYVLC 240
>gi|66356394|ref|XP_625375.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226387|gb|EAK87392.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 500
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 174/460 (37%), Gaps = 147/460 (31%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSF--------------DADIICFQETKLR- 41
+ I+++NVNGL ++R + KLLD+ DIIC QE K+
Sbjct: 4 LSIISFNVNGLISFTKRRGYTESNFSKLLDNICVNDEVTSANLNVKSPDIICLQECKMSF 63
Query: 42 RQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFT 101
+L + + YES+FS + + YSGVAT+C K+ + + A +GF+
Sbjct: 64 GDDLNNSIGCPGNYESYFSLAENNKR----YSGVATYCSKKT--------MVIEAAKGFS 111
Query: 102 GLLE----------TSGSKIMEGLEDFSKDE------LLKIDSEGRCVITDHGHFILFNV 145
L K+ E D SK + + +ID EGRCVITDH F+L N+
Sbjct: 112 WLESNPCQFDINQMIQTEKLQEIESDISKIKDKYGISISEIDGEGRCVITDHKQFVLLNL 171
Query: 146 YGP----------------------------RADSEDTV---RIQFKLQF-------FHV 167
Y P R + +TV R +++L F HV
Sbjct: 172 YVPLLRSKAEEKEEKEKEEVMLKEIQNQNETRIELSETVDPERFKYRLAFQEYLNLLLHV 231
Query: 168 LQG---RRIFVVGDLNIAPAAI---------DRCDAGP-------------DFAKNEFRI 202
L+ R + + GD NI I D C P FAK +
Sbjct: 232 LKNACKRNVILAGDFNIILEKIDCYDDCGILDNCKLAPCMLTSPKEIFETSSFAKAYMHM 291
Query: 203 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
++ + G D +R +P YTCW + N GTRID L + + +
Sbjct: 292 RRMNIEMIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLISKGLISESI 351
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPEI 320
+C+IL + GSDH P+ + L GE +
Sbjct: 352 -------------KCEIL-------------------DHIYGSDHCPILLILKTGEFESL 379
Query: 321 ---PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGK 357
+ PS+ S+YLP + Q T+ L +V +G+
Sbjct: 380 YNNEKRKPPSICSKYLPQCKQRQSTISQFLTLSKVEVKGQ 419
>gi|384253850|gb|EIE27324.1| DNase I-like protein [Coccomyxa subellipsoidea C-169]
Length = 211
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 42/220 (19%)
Query: 96 AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT 155
A+EG T + K + + +++L +D++GRCVITDHG F+LFN YGP + +
Sbjct: 2 AKEGLTRIHYNPSDKF---WDRYRREDLEMVDNQGRCVITDHGAFVLFNCYGPAVTNITS 58
Query: 156 VRIQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSF 215
R FK+Q++ A DR D R WFR L + GG
Sbjct: 59 DRFAFKMQYYE---------------ATMLTDRPD----------RAWFRRWLHQEGGPL 93
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK-HDLQSHNFVTCHV 274
D+FR HP ++AYT W T A + N+G+R+D +L P K H
Sbjct: 94 VDLFRKMHPSEQKAYTVWNMATLARKRNHGSRVDFLLAGRPDPAMKDHTAAPEEKELAGE 153
Query: 275 NECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
D+ D + W + EGSDHAPV+ L
Sbjct: 154 PFEDLFTDVRIW-------------STFEGSDHAPVWADL 180
>gi|406606096|emb|CCH42456.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Wickerhamomyces
ciferrii]
Length = 558
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 136/316 (43%), Gaps = 66/316 (20%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ +T+N+NG R ++ + + DS DII QE K+ +++ + GY
Sbjct: 19 VRFITFNINGYRTVFHYHPWNKLRTFNNMFDSLHGDIITLQEIKVAAKDINHSIGKIPGY 78
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKS--PFSSTEVALPV-AAEEGFTGLLETSGSKI- 111
+F + + GYSGVA + R+ S + AL V AEEG TG+L++ +++
Sbjct: 79 NAFLTVPSL----KKGYSGVAVYVRIPKIDESESVKAALKVIKAEEGITGILKSHDTQVE 134
Query: 112 -------MEGLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRADSEDTVRIQFKLQ 163
+ G + +D +ID+EGRC+I + G+ ++ +VY P QF+LQ
Sbjct: 135 YRNSDLSIGGYPNLEEDISHQIDNEGRCIILEMGNGIVVISVYCPANSMGTEEGEQFRLQ 194
Query: 164 FFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEF---- 200
FF L G+ + ++GD+NI+ ID D D K ++F
Sbjct: 195 FFEALFSRIRNLEKLGKHVVLMGDINISKDLIDSADGINDRMKMGKLLKISDPHKFEELN 254
Query: 201 -------------RIWFRSMLVES---------GGSFFDVFRSKHPERREAYTCWPSNTG 238
RI +L++S D R + YT W + T
Sbjct: 255 REQALNFIRRSLPRIMLNELLIDSIDQDMKSEKSRVMIDTVRKIQGRKHGLYTVWNTLTN 314
Query: 239 AEQFNYGTRIDHILCA 254
+ NYG+RID IL
Sbjct: 315 SRPGNYGSRIDLILAT 330
>gi|218665721|ref|YP_002424683.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218517934|gb|ACK78520.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 253
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 135/325 (41%), Gaps = 84/325 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDA--- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + R GYSGVATF R +T + +P
Sbjct: 56 --RWAVAERPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ V GR
Sbjct: 87 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 230
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 142 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 200
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W T A N G R+D+ +H+
Sbjct: 201 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 227
Query: 291 APRWKG-GMSTRLEGSDHAPVYMCL 314
PR +G G++T + GSDH PV++ L
Sbjct: 228 LPRLRGAGIATDVTGSDHCPVWLEL 252
>gi|198282493|ref|YP_002218814.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198247014|gb|ACH82607.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 255
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 135/325 (41%), Gaps = 84/325 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++
Sbjct: 3 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDA--- 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + R GYSGVATF R +T + +P
Sbjct: 58 --RWAVAERPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ V GR
Sbjct: 89 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 143
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 230
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 144 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 202
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W T A N G R+D+ +H+
Sbjct: 203 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 229
Query: 291 APRWKG-GMSTRLEGSDHAPVYMCL 314
PR +G G++T + GSDH PV++ L
Sbjct: 230 LPRLRGAGIATDVTGSDHCPVWLEL 254
>gi|415969502|ref|ZP_11558374.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
gi|339833429|gb|EGQ61275.1| exodeoxyribonuclease III Xth [Acidithiobacillus sp. GGI-221]
Length = 257
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 93/325 (28%), Positives = 135/325 (41%), Gaps = 84/325 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + LR+ + + AD +CFQE K L + DGY++
Sbjct: 5 MRLYSWNVNGWRAACRK--GLREWVATVQADALCFQEIKADPDRLPATETALDGYDA--- 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + R GYSGVATF R +T + +P
Sbjct: 60 --RWAVAERPGYSGVATFSRAPCRPLTTGLGIP--------------------------- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
+ D EGR V+TD G F L+NVY P +DT R+ FKL F+ V GR
Sbjct: 91 ----RFDREGRVVVTDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVAAGR 145
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 230
+ GD+N A AID + + F R+ L + + + D FR HP+ E Y
Sbjct: 146 AVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWVDSFRHLHPDAVE-Y 204
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W T A N G R+D+ +H+
Sbjct: 205 SWWSQRTDARARNIGWRLDYFW-----IHESL---------------------------- 231
Query: 291 APRWKG-GMSTRLEGSDHAPVYMCL 314
PR +G G++T + GSDH PV++ L
Sbjct: 232 LPRLRGAGIATDVTGSDHCPVWLEL 256
>gi|255020174|ref|ZP_05292243.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340783591|ref|YP_004750198.1| exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
gi|254970316|gb|EET27809.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|340557742|gb|AEK59496.1| Exodeoxyribonuclease III [Acidithiobacillus caldus SM-1]
Length = 253
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 143/330 (43%), Gaps = 94/330 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R V++ G LR+ + + D++C QETK++ +L D G+ S ++
Sbjct: 1 MRLYSWNVNGWRA-VTRHG-LREWVAATPMDVLCVQETKVQLAQLDPDEAQLPGFHSLWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVATF R P ++ L G DF
Sbjct: 59 -----EAERPGYSGVATFFR--DPCTAVRAQL---------------------GRADF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGR 171
D+EGR V+TD G F L+NVY P +D R+ FKL F+ V +GR
Sbjct: 89 ------DAEGRVVVTDCGDFDLYNVYFPNG-KKDAQRLAFKLDFYAFFLEQVTALVRRGR 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GD+N A +D A P+ + E R W E+G F D FR HPE
Sbjct: 142 SVIFCGDVNTAHTPLDL--ARPEANRRVSGFLPEERAWL-DRWREAG--FIDSFRHFHPE 196
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
R Y+ W +GA + + G R+D+ L
Sbjct: 197 ERR-YSWWSLRSGARERDVGWRLDYFWVHESLL--------------------------- 228
Query: 286 WKPGNAPRWKG-GMSTRLEGSDHAPVYMCL 314
PR KG G++T + G+DH PV++ L
Sbjct: 229 ------PRLKGAGIATEVRGADHCPVWLEL 252
>gi|16904257|gb|AAL30837.1|AF440399_1 DNA lyase, partial [Zymoseptoria tritici]
Length = 491
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 128/553 (23%), Positives = 196/553 (35%), Gaps = 151/553 (27%)
Query: 126 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVV 176
+D+EGRCVI + F+LF VY P S ++ F+ FF L QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 177 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 215
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGRDAGVL 134
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVN 275
+D R HP RR YT W + A N G+RID +L A + + V
Sbjct: 135 WDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVA-------------DVMQSWVK 181
Query: 276 ECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY-------------MCLGEVPEIPQ 322
+ +I L GSDH PVY + L E+ P
Sbjct: 182 DANI-------------------QEGLLGSDHCPVYADFHDVVDDHGRNVSLLEIMNPPG 222
Query: 323 -------------HSTPSLASRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLP 366
STP+ +++ +P R ++ + +K+ + Q + SG P
Sbjct: 223 VFENGQRKVEWTLQSTPAFSAKRMPEFDKRRSIKSMFAAPPVKKFASSQLERTP-SGIDP 281
Query: 367 AESNSTGDTEDCSENVDRSLNNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVAS 426
A + + + D S + D++ + D A
Sbjct: 282 A-AQANAPSADISPHEDKAAASQSDE--------------------------------AR 308
Query: 427 HSTITQGSSNHISPFHVDRARKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNV 485
T + S P + + GQ SLK FF K S V D + + ++
Sbjct: 309 PPTKRKASIPSKDPLPSKKQKDTKAAPSKGQKSLKGFFSSKASPVKPDLQSQESSQKTSI 368
Query: 486 NNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 545
+ + +L + P + S + P S S V + + S ++ ++
Sbjct: 369 TSPPAEVALPPPQSPSTTFPSQEPPSPTASAS-PTADQVATQIASAERSQR--------- 418
Query: 546 RNNVALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPE 605
W + + PLC+GH+EPC KK G GR F++CAR GP+ E
Sbjct: 419 -------SWGAL--FTKPPAPLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPSGEKE 469
Query: 606 AN----CGYFKWA 614
CG F WA
Sbjct: 470 KGTEWRCGTFIWA 482
>gi|308274119|emb|CBX30718.1| Exodeoxyribonuclease [uncultured Desulfobacterium sp.]
Length = 263
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 59/269 (21%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+K+V++NVNGLR + + FGS++++ + DI+ QETKL+ + ++ + Y S+
Sbjct: 7 IKLVSWNVNGLRAIIQKDFFGSIQRM----NPDIVAIQETKLQEHQRTDKMLSFEDYNSY 62
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+S + + GYSGVATF R+ + + EG+ +
Sbjct: 63 WSYSTV----KKGYSGVATFTRI-------------------------APQNVKEGIGNP 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------Q 169
DE EGR + TD G FI FNVY P D R+Q+KL F++ Q
Sbjct: 94 GYDE------EGRILETDFGDFIFFNVYFPNGQMGDD-RLQYKLNFYNDFFAYTDSLKNQ 146
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 225
G+ + + GD N A ID P+ + F R W ++ + D FR +PE
Sbjct: 147 GKNLIISGDYNTAHNEIDLTHPKPNEKYSGFLRVERDWMDEIIKR---GYVDTFRYFYPE 203
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ + Y+ W A + N G R+D+I +
Sbjct: 204 KVK-YSWWSYRANARKKNVGWRVDYIFVS 231
>gi|237794818|ref|YP_002862370.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|229261060|gb|ACQ52093.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 253
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ D Y S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEHNIKNIDSYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FA-----AKKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C I+++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPIMLELK 253
>gi|153937900|ref|YP_001390827.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180137|ref|ZP_02614801.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|170757676|ref|YP_001781117.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|226948816|ref|YP_002803907.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384461879|ref|YP_005674474.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|387817755|ref|YP_005678100.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|421833792|ref|ZP_16268989.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|429247526|ref|ZP_19210769.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
gi|152933796|gb|ABS39294.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|169122888|gb|ACA46724.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|182668909|gb|EDT80885.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|226843845|gb|ACO86511.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295318896|gb|ADF99273.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|322805797|emb|CBZ03362.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
gi|409744929|gb|EKN43319.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001627]
gi|428755480|gb|EKX78108.1| exodeoxyribonuclease III [Clostridium botulinum CFSAN001628]
Length = 253
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 139/297 (46%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQGNQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FAV-----KKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT+ F L N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITEFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|317151124|ref|XP_001824462.2| DNA lyase [Aspergillus oryzae RIB40]
Length = 556
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 42/219 (19%)
Query: 2 KIVTYNVNGLRQRVSQFG-----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE 56
+I T+NVNG+R + + + + +ADI+ QETK++R++L+ D+V+ G++
Sbjct: 4 RITTWNVNGIRNPFAYEPWRGKRTFEAMFEILEADIVVLQETKIQRKDLRDDMVLVPGWD 63
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL------------ 104
FS R+ + GYSGV + R P+ AEEG TG+L
Sbjct: 64 CHFSLPRS----KKGYSGVVIYTR-------NATCAPLRAEEGLTGVLCPPNSSVPFRDL 112
Query: 105 ----ETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGP--RADSEDTVRI 158
+ G E L D +DSEGRCVI + F+L +Y P R +S D+ R
Sbjct: 113 PLDRQIGGYPTTEQLSTLELDA-ATLDSEGRCVILEFPAFVLLGLYCPANRDESRDSFRQ 171
Query: 159 QFKLQFFH------VLQGRRIFVVGDLNIAPAAIDRCDA 191
F L V G+R+FV GDLNI+ ID A
Sbjct: 172 GF-LDLMDARIRNLVAMGKRVFVTGDLNISRGEIDAAHA 209
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 24/199 (12%)
Query: 429 TITQGSSNHISPFHVDRARKKAKKSQL----GQLSLKSFFHKRSNVSHDDNNSITDTSLN 484
T+ + S P V R++ +++ Q +LK FF + VS + I++T
Sbjct: 364 TVRKRSEKSDPPPSVKRSKSFPSQTRTTSVSAQRTLKGFFKPKGVVS----SQISETK-T 418
Query: 485 VNNSVTDTSLSQEEVPESHHHSNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDK 544
+ V S +P S S D + +H V ++ S+ F+ +
Sbjct: 419 PDTPVQAMERSSGPLPASSTISQPEEQED----LQGIHSVPAAPTSYMDSSGPAAPFVGQ 474
Query: 545 ERNNV-----ALLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEG 599
V + +W ++ + +P+C+GH+EPC++ KKPG GR F++C R G
Sbjct: 475 NSETVIDPIVSKEDWSKL--FAKKPVPMCEGHREPCISLSTKKPGINCGRSFWICPRPLG 532
Query: 600 PASNPEAN----CGYFKWA 614
P+ N E C F WA
Sbjct: 533 PSGNKEKGTQWRCATFIWA 551
>gi|148379451|ref|YP_001253992.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153934303|ref|YP_001383830.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153935156|ref|YP_001387380.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
gi|148288935|emb|CAL83022.1| putative exodeoxyribonuclease [Clostridium botulinum A str. ATCC
3502]
gi|152930347|gb|ABS35847.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152931070|gb|ABS36569.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
Length = 253
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 138/297 (46%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFIEWIGEESPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ +VK P++ + G+E F
Sbjct: 59 FAV-----KKGYSGVATYTKVK----------PISVKHSI-------------GIEKF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DSEGR +IT F L N+Y P D R+Q+KL F+ L +G+
Sbjct: 89 ------DSEGRILITGFKDFTLLNIYFPNG-QRDEERLQYKLDFYEALFNYCDELVKEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|397904085|ref|ZP_10505014.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
gi|343178831|emb|CCC57913.1| Exodeoxyribonuclease III [Caloramator australicus RC3]
Length = 252
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 86/326 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I T+NVNGLR + + G L + D D DI+C QETKL+ +++ ++ GY +FS
Sbjct: 1 MRIYTWNVNGLRSILKK-GFLDFIKDE-DPDILCLQETKLQEEQIDDEIKNLKGYYKYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F +V+ + + G+ G+E+F
Sbjct: 59 FA-----NKKGYSGVAIFTKVE-------------PKNIYYGI----------GIEEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR +I ++ FILFN+Y P D R+ +KL+F+ + +G+
Sbjct: 89 ------DTEGRILIAEYEDFILFNIYFPNGKMSDE-RLDYKLRFYDAIMDYSKNLLEEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 228
+ + GD N A ID + + + F R + +E G F D +R +P++ E
Sbjct: 142 NLIICGDYNTAHREIDLKNPKQNEKSSGFLPIEREYIDRFLEIG--FIDAYRHFYPDKIE 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
YT W A + N G RID+ S+NF++ + + +IL
Sbjct: 200 -YTWWSYMFKAREKNVGWRIDYFFV------------SNNFIS-KIKDVEIL-------- 237
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
T + GSDH PV + +
Sbjct: 238 -----------THIHGSDHCPVKLTI 252
>gi|424827324|ref|ZP_18252133.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
gi|365980247|gb|EHN16283.1| exodeoxyribonuclease III [Clostridium sporogenes PA 3679]
Length = 253
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/297 (27%), Positives = 139/297 (46%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + + + + DI+C QETKL+ +L+ ++ DGY S+FS
Sbjct: 1 MRIYSWNVNGLRAVAKK--NFLEWIGEENPDILCIQETKLQENQLEDNIKNIDGYYSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P++ + G +
Sbjct: 59 FAH-----KKGYSGVATYTKEE----------PISVKHGIS------------------- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ + DSEGR +IT+ FIL N+Y P D R+Q+KL F+ L G+
Sbjct: 85 --IERFDSEGRILITEFKDFILLNIYFPNG-QRDEERLQYKLDFYAALFNYCDELVEAGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W ++E G + D FR+ +P++
Sbjct: 142 KLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWL-DKIIERG--YTDTFRNMNPDKI 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
+ Y+ W A + N G RID+ + L + + + N V + C ++++ K
Sbjct: 199 K-YSWWSYRFKARERNAGWRIDYHFVSNNLLDRVENTEILNEVYGS-DHCPVMLELK 253
>gi|408381604|ref|ZP_11179152.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
gi|407815535|gb|EKF86105.1| exodeoxyribonuclease III [Methanobacterium formicicum DSM 3637]
Length = 259
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 117/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R V + G + L DI+C QETK ++ D+ D Y + S
Sbjct: 4 IRILSWNVNGIRA-VHRKG-FKDWLMGDKPDILCIQETKAHLKQFPKDIQNLDDYRLYLS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVAT+ R+K P E GF
Sbjct: 62 -----EAERKGYSGVATYTRLK----------PEKVENGFG------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ +GR
Sbjct: 88 --ISKFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMNFYDSFLDYADALKEEGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I V GD+N A ID + + F R W L + D FR +PE
Sbjct: 145 NIVVCGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFL---SHGYVDTFRELNPE-P 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
E YT W T A + N G R+D+
Sbjct: 201 ENYTWWSYRTRARERNVGWRLDYFFV 226
>gi|325960168|ref|YP_004291634.1| exodeoxyribonuclease iii Xth [Methanobacterium sp. AL-21]
gi|325331600|gb|ADZ10662.1| exodeoxyribonuclease III Xth [Methanobacterium sp. AL-21]
Length = 257
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 62/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
++I+++NVNG+R V + G LD F+ DI+C QETK R++ D+ DGY+
Sbjct: 4 IRILSWNVNGIRA-VHKKG----FLDWFNNEKPDILCIQETKAVRKQFPPDIRAVDGYQL 58
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ S+ R GYSG AT+ +K P + GF G+E
Sbjct: 59 Y-----VSEASRKGYSGTATYTSLK----------PEGVKYGF-------------GVEK 90
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------- 168
F D+EGR +ITD+G F+LFN+Y P R+ +K++F+
Sbjct: 91 F--------DTEGRTLITDYGDFVLFNIYFPNGKMSKE-RLDYKMEFYDTFLEYADELKD 141
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 224
QG+ I V GD+N A ID + + F R W +L + D FR +
Sbjct: 142 QGKNIVVCGDVNTAHREIDLAHPKENSKISGFLPEERAWIDKLL---DHGYVDTFREFNQ 198
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILC 253
E E YT W T A + N G R+D+
Sbjct: 199 EPEE-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + RI ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRISWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|67606491|ref|XP_666752.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis
TU502]
gi|54657802|gb|EAL36520.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis]
Length = 498
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 113/458 (24%), Positives = 171/458 (37%), Gaps = 147/458 (32%)
Query: 1 MKIVTYNVNGL----RQRVSQFGSLRKLLDSF--------------DADIICFQETKLR- 41
+ I+++NVNGL ++R KLLD+ DIIC QE K+
Sbjct: 4 LSIISFNVNGLISFTKRRGYTESIFSKLLDNICVNDEVTNANLNVESPDIICLQECKMSF 63
Query: 42 RQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFT 101
+L + + YES+FS + + YSGVAT+ S++ + + A +GF+
Sbjct: 64 GDDLNNSIGCPGNYESYFSLAENNKR----YSGVATY--------SSKKTMVIEAAKGFS 111
Query: 102 GL------------LETSGSKIMEG----LEDFSKDELLKIDSEGRCVITDHGHFILFNV 145
L ++T + +E ++D + +ID EGRCVITDH F+L N+
Sbjct: 112 WLESNPCQFDINQMIQTEKLQEIESNISKIKDKYGISISEIDGEGRCVITDHKQFVLLNL 171
Query: 146 YGPRADSE-------------------------------DTVRIQFKLQF-------FHV 167
Y P S+ D R +++L F HV
Sbjct: 172 YVPLLRSKAEEKEEKEKEEVVLKEIQNQNETQIELSETVDPERFKYRLAFQEYLNLLLHV 231
Query: 168 LQG---RRIFVVGDLNIAPAAI---------DRCDAGPDFAKNEFRIW-----------F 204
L+ R + + GD NI I D C P KN I
Sbjct: 232 LKNACKRNVILAGDFNIILEKIDCYDDCGILDNCKLAPCVLKNTKEILETSSFAKAYMHM 291
Query: 205 RSMLVE--SGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKH 262
R M +E G D +R +P YTCW + N GTRID L + + +
Sbjct: 292 RRMNIEMIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLVSKGLISESI 351
Query: 263 DLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL--GEVPEI 320
+C+IL + GSDH P+ + L GE +
Sbjct: 352 -------------KCEIL-------------------DHIYGSDHCPILLILKTGEFESL 379
Query: 321 ---PQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQ 355
+ PS+ S+YLP + Q T+ L ++ Q
Sbjct: 380 YNNEKRKPPSICSKYLPQCKQRQSTISQFLTLSKIEGQ 417
>gi|410720602|ref|ZP_11359956.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
gi|410600729|gb|EKQ55254.1| exodeoxyribonuclease III [Methanobacterium sp. Maddingley MBC34]
Length = 259
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 115/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R + + L DI+C QETK R++ D+ D Y + S
Sbjct: 4 IRILSWNVNGIR--AAHRKGFKDWLMKDKPDILCIQETKAHRKQFPKDIQNLDEYHLYLS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVAT+ ++K P E GF
Sbjct: 62 EAQ-----RKGYSGVATYTQLK----------PEKVENGFG------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ K DSEGR +ITD+G F+LFN+Y P R+Q+K+ F+ +GR
Sbjct: 88 --IPKFDSEGRTLITDYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDSFLDYADALKEEGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I V GD+N A ID + + F R W L + D FR +P
Sbjct: 145 NIVVCGDVNTAHNEIDLARPKENEKISGFLPEEREWLDRFLSH---GYVDTFRELNPG-P 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
E YT W T A + N G R+D+
Sbjct: 201 ENYTWWSYRTRARERNVGWRLDYFFV 226
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 57/297 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ ++NVNG+R V+Q G + +++ DI+C QE K ++ D+ GY SFF
Sbjct: 1 MKLYSWNVNGIRA-VAQKG-FTEWVEAAQPDILCLQEVKAAEDQISEDIRCIPGYHSFFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + + + P S T TGL E
Sbjct: 59 AAE-----RKGYSGTAVYYK-EEPISIT------------TGLSED-------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGR 171
+ + EGR +I ++ F LFN+Y P +D R+QFK+ F+ V QG+
Sbjct: 87 ----RFNHEGRTIIMEYPEFTLFNIYFPNGQKDDE-RLQFKMDFYDCFLKDVNALVAQGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD+N A +D + + ++ F R W E+G + D +R HP+
Sbjct: 142 KVIICGDVNTAHTEMDLKNPKSNAKRSGFLPMEREWLDHFF-ENG--YVDTYRHLHPDTV 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
E Y+ W A N G RID+ + + D H VT + C + I+ K
Sbjct: 199 E-YSWWSYRFNARANNAGWRIDYFFVSDNAIDMVKDAAIHTEVTGS-DHCPVSIEIK 253
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|149248308|ref|XP_001528541.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448495|gb|EDK42883.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 503
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 156/397 (39%), Gaps = 114/397 (28%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGS-LRKLLDSFDADIICFQETKLRRQELK--SDLVMA 52
++ +T+NVNG++ + +F + + +S +ADII QE KL Q + ++
Sbjct: 21 IRFITFNVNGVKTVFNYHPWNKFNNDFNAMFNSLEADIITLQELKLTEQTMGMLKNIGHL 80
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGS--- 109
D + SF S T + GYSGV F R+ + E V AEEG TG L GS
Sbjct: 81 DDFRSFISLPST----KKGYSGVGLFVRIPRSSAQQECLTVVKAEEGITGWLCARGSDKS 136
Query: 110 ------KI------------MEGLEDFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPR- 149
K+ + G D +K+E L++DS+GRCV I + ++F +Y P
Sbjct: 137 YREVEGKVEGTQEEDGHDASIGGYTDITKEEGLELDSQGRCVAIELANNCVVFALYCPAN 196
Query: 150 ---ADSEDTVRIQFKLQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGPD-FAKN-- 198
D + R++F Q G+++ V+GD+N++ ID + D KN
Sbjct: 197 SMGTDEGEAFRMKFLTHLLLRCQNLDRIGKKVVVMGDINVSLDLIDSAEGINDRLMKNLI 256
Query: 199 ---------------------------------EFRIWFRSMLVES----GGSFFDVFRS 221
F + S+L ES +D R
Sbjct: 257 TDCRDGHTFEVQNYEECCGFKTSRLFRQLLNSYVFSSMWHSLLPESEKMNNQFLYDTTRY 316
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
RR+ YT W + T + Q NYG+RID ILC SH V
Sbjct: 317 IQGRRRKMYTVWNTLTSSRQINYGSRIDLILC-----------NSHEMVK---------- 355
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 318
NA W + GSDH PV+ +P
Sbjct: 356 -----SISNADIWPFIL-----GSDHCPVFTDFDLLP 382
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + +GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---NGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNTG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|408419182|ref|YP_006760596.1| exodeoxyribonuclease ExoA [Desulfobacula toluolica Tol2]
gi|405106395|emb|CCK79892.1| ExoA: exodeoxyribonuclease [Desulfobacula toluolica Tol2]
Length = 263
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 55/273 (20%)
Query: 1 MKIVTYNVNGLRQRVS-QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+KI+++NVNGLR + +F S + D DI+ QETKL+ + +++ + YESF+
Sbjct: 7 LKIISWNVNGLRAVMKKEFASS---ICELDPDILLLQETKLQENQRTDEMIRLNSYESFW 63
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + + GYSGVA + +++ T + P
Sbjct: 64 SYSTV----KKGYSGVAAYSKIEPEQVITSFSRP-------------------------- 93
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QG 170
+ D+EGR + D+ FILFN+Y P D R+++KL F+ QG
Sbjct: 94 -----EFDNEGRVIQLDYKKFILFNIYFPNGQMSDE-RLEYKLAFYDWFLDYANQLKDQG 147
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERR 227
+ + + GD N A ID + GP+ ++ F R +L V+ G + D +R +PE+
Sbjct: 148 KSLIITGDFNTAHNEIDLKNPGPNSKRSGFLRIERDVLDHMVDMG--YVDTYRYFYPEKV 205
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 260
+ Y+ W A + N G RID+ + +
Sbjct: 206 K-YSWWSYRFNARKNNAGWRIDYFFVTKDLIDK 237
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSIDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQ---NTFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|426405404|ref|YP_007024375.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
gi|425862072|gb|AFY03108.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus str. Tiberius]
Length = 271
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 137/328 (41%), Gaps = 89/328 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNG+R L +++ DI C QETK +++++L S++S
Sbjct: 17 VKIISWNVNGIR--ACHKKGLLDFVNTEKPDIFCIQETKAHIDQVENELKKLTWMHSYWS 74
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF + P + E G+ G+ ++
Sbjct: 75 SAV-----KKGYSGVATFVNEE----------PKSVEYGW-------------GISEYQ- 105
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
SEGR +++DHG F L+N+Y P S D VR FK QF L GR
Sbjct: 106 -------SEGRIIVSDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNVHLKEKLATGR 157
Query: 172 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+I VVGD N+A AID R F E R WF S V+ G F D FR P
Sbjct: 158 QIVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSE 213
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
+ Y+ W A N G RID+I C L + ++ DIL
Sbjct: 214 AKRYSWWDYRQMARISNRGWRIDYI-CISKGLEK------------YLASADIL------ 254
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
++EGSDH PV L
Sbjct: 255 -------------DQVEGSDHCPVVATL 269
>gi|316994995|gb|ADU79051.1| DNA lyase, partial [Zymoseptoria tritici]
Length = 492
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 123/533 (23%), Positives = 196/533 (36%), Gaps = 111/533 (20%)
Query: 126 IDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVV 176
+D+EGRCVI + F+LF VY P S ++ F+ FF L QG+R+ +V
Sbjct: 17 LDAEGRCVIVEFPAFVLFGVYVPANTS--GLQDAFRSGFFLALDCRIRNLMRQGKRVVLV 74
Query: 177 GDLNIAPAAID----------RCDAGPDFAKNEFRIWFRSMLVES-----------GGSF 215
GDLN+ ID R D R F +L + G
Sbjct: 75 GDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQLLTDGEVIGERDEGREAGVL 134
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD------LQSHNF 269
+D R HP RR YT W + A N G+RID +L A D L +
Sbjct: 135 WDTTRGFHPARRGMYTHWDTKKNARPGNSGSRIDFVLVADVMQSWVKDANIQEGLLGSDH 194
Query: 270 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLA 329
+ + D++ D+ GG + LE + V+ E STP+ +
Sbjct: 195 CPVYADFHDVVADH------------GGNVSLLEIMNPPGVFENGERKVEWTLQSTPAFS 242
Query: 330 SRYLPII---RGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRSL 386
++ +P R ++ + +K+ + Q K + + A + + + D S D++
Sbjct: 243 AKRMPEFDKRRSIKSMFAAPPVKKTTSSQLK--RTPSGIDAAAQANVPSVDISPMEDKAA 300
Query: 387 NNYCDSGILQGVYCSSSNQESEGEFTKTIENCRDSANVASHSTITQGSSNHISPFHVDRA 446
+ D + + A++ S +
Sbjct: 301 ASLSD---------------------EARPPTKRKASIPSKDALPNKKQKDT-------- 331
Query: 447 RKKAKKSQLGQLSLKSFF-HKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEEVPESHHH 505
KA S+ GQ SLK FF K S V D + + ++ + + + + P +
Sbjct: 332 --KAAPSK-GQKSLKGFFSSKTSPVKPDLKSQESSQKSSITSPPAEVAFPPPQSPSTTFP 388
Query: 506 SNKIPVTDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKERNNVALLEWRRIQQLMETSI 565
S + P S S V + + S ++ ++ W + +
Sbjct: 389 SQEPPSPTASAS-PTADQVATQIASAERSQR----------------SWGAL--FTKPPA 429
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEAN----CGYFKWA 614
PLC+GH+EPC KK G GR F++CAR GP E CG F WA
Sbjct: 430 PLCEGHEEPCKTLQTKKKGSNQGRSFWMCARPLGPTGEKEKGTEWRCGTFIWA 482
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQ---NTFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARNKNIGWRIDYFLCSNP 223
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 127/270 (47%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQF---FHVLQGRR-I 173
D EGR V + F L NVY P +A S + R+ ++++F VL+ ++ +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKVLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFSK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|42524876|ref|NP_970256.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|39577087|emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 285
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 99/328 (30%), Positives = 137/328 (41%), Gaps = 89/328 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNG+R L ++ DI C QETK +++++L S++S
Sbjct: 31 VKIISWNVNGIR--ACHKKGLLDFVNREKPDIFCIQETKAHIDQVENELKKLTWNHSYWS 88
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF + P + E G+ G+ ++
Sbjct: 89 SAV-----KKGYSGVATFVNEE----------PKSVEYGW-------------GISEY-- 118
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
+SEGR +I+DHG F L+N+Y P S D VR FK QF L GR
Sbjct: 119 ------ESEGRIIISDHGPFDLYNIYFPNGGSGD-VRHNFKQQFLKDLNHHLKEKLATGR 171
Query: 172 RIFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
++ VVGD N+A AID R F E R WF S V+ G F D FR P
Sbjct: 172 QVVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEE-RAWFDS-FVDLG--FIDTFRYFKPSE 227
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
+ Y+ W A N G RID+I C L + ++ DIL
Sbjct: 228 AKRYSWWDYRQMARISNRGWRIDYI-CVSKGLEK------------YLASADIL------ 268
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
++EGSDH PV L
Sbjct: 269 -------------DQVEGSDHCPVVATL 283
>gi|28211273|ref|NP_782217.1| exodeoxyribonuclease III [Clostridium tetani E88]
gi|28203713|gb|AAO36154.1| exodeoxyribonuclease III [Clostridium tetani E88]
Length = 260
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 128/280 (45%), Gaps = 56/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNGLR + + K ++ D+ C QETK++ +L+ +L +GY+S+FS
Sbjct: 4 MRIFSWNVNGLRAIAKK--NFFKWVEEEKPDVFCLQETKIQDHQLEDNLKNIEGYKSYFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVAT+ + + P + G G+E+F
Sbjct: 62 FAE-----KKGYSGVATYTKTE----------PKSVLNGI-------------GIEEF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR +I++ F L N+Y P D R+ +KL+F+ + +G+
Sbjct: 92 ------DNEGRVLISEFEEFTLLNIYFPNGQMNDE-RLDYKLRFYDAILDYCNDLVSKGK 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD N A ID + + + F R W + + DV+R+ +PE+
Sbjct: 145 KLIICGDYNTAHREIDLKNPKNNEKYSGFLPIEREWIDKFI---NNGYVDVYRNFYPEKV 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E Y+ W A + N G RID+ + L D + H
Sbjct: 202 E-YSWWSYRFKARERNAGWRIDYFFVSDNVLPLIKDTKIH 240
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRISYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ AYT W A N G RID+ LC+ P
Sbjct: 193 KERAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|51013817|gb|AAT93202.1| YBL019W [Saccharomyces cerevisiae]
Length = 520
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+L+F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L + P Q P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|6319452|ref|NP_009534.1| DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|586406|sp|P38207.1|APN2_YEAST RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|536013|emb|CAA84838.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810316|tpg|DAA07101.1| TPA: DNA-(apurinic or apyrimidinic site) lyase APN2 [Saccharomyces
cerevisiae S288c]
gi|392301201|gb|EIW12290.1| Apn2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 520
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+L+F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GEMFRLRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L + P Q P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVPIPKFEARYKYNLRN--HNVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 133/328 (40%), Gaps = 84/328 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ ++ D Y +
Sbjct: 1 MKLVSWNVNGLRACVNK--GFSEYFAQTDADIFCVQETKLQEGQIALD------YPDYHQ 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F +VK P S + GLE+ S
Sbjct: 53 YWNYAEK--KGYSGTAVFTKVK-PLS------------------------VRYGLEEDS- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG----RR 172
+ EGR + + F L VY P A D R+ ++L+ F + G +
Sbjct: 85 ------EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRFRRYIAGLDAVKP 137
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AYT
Sbjct: 138 VILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYT 197
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W + + N G RID+ L + D Q H V
Sbjct: 198 WWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL-------------------- 237
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLGEVPE 319
GSDH PV + L EVP+
Sbjct: 238 ------------GSDHCPVVLTLAEVPQ 253
>gi|374339472|ref|YP_005096208.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
gi|372101006|gb|AEX84910.1| exodeoxyribonuclease III [Marinitoga piezophila KA3]
Length = 254
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 124/269 (46%), Gaps = 60/269 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R + + LD + DI+C QETK R ++L + ++ +F
Sbjct: 1 MKILSWNVNGIRAAIKK--GFLDFLDKENPDILCVQETKAREEQLTKKFLTYGDWKKYFV 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF ++K +++GL
Sbjct: 59 SAE-----KKGYSGVATFTKIKP-------------------------KNVLKGL----G 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+E+ DSEGR +IT++ +F LFN+Y P + + R+Q+K+ F++ L +
Sbjct: 85 NEMF--DSEGRTLITEYDNFSLFNIYFPNGKAREE-RLQYKMDFYYYLLEFLEDYKKKQP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPE 225
I + GD+N A ID + + F R W +L ESG F D FR +K P
Sbjct: 142 NIIICGDVNTAHKEIDLARPKENENTSGFLPIEREWIDKLL-ESG--FVDTFRMFNKEPG 198
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W T A + N G RID+ +
Sbjct: 199 N---YTWWDYKTRARERNVGWRIDYFFVS 224
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 133/328 (40%), Gaps = 84/328 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ ++ D Y +
Sbjct: 1 MKLVSWNVNGLRACVNK--GFSEYFAQTDADIFCVQETKLQEGQIALD------YPDYHQ 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F +VK P S + GLE+ S
Sbjct: 53 YWNYAEK--KGYSGTAVFTKVK-PLS------------------------VRYGLEEDS- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG----RR 172
+ EGR + + F L VY P A D R+ ++L+ F + G +
Sbjct: 85 ------EPEGRIITLEFDGFYLVTVYTPNA-KRDLSRLDYRLEWEDRFRRYIAGLDAVKP 137
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID +A + + F R + + G F D FR +PE+ +AYT
Sbjct: 138 VILCGDLNVAHEEIDLKNAKGNRGNSGFTAEERQKMTDLLGAGFIDTFRHFYPEQTDAYT 197
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W + + N G RID+ L + D Q H V
Sbjct: 198 WWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL-------------------- 237
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLGEVPE 319
GSDH PV + L EVP+
Sbjct: 238 ------------GSDHCPVVLTLAEVPQ 253
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---RGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 88/326 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ G + DAD+ C QETK+ QE + L + D S+++
Sbjct: 1 MKLVSWNVNGLRACVNK-GCFTDYFEQIDADVFCVQETKM--QEGQLSLELGDNIHSYWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P++ G +
Sbjct: 58 YAL-----KKGYSGTAVFSKIE----------PISVRYGL------------------EE 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
DE ++EGR + + F L NVY P A D R+ ++L++ + + +
Sbjct: 85 DE----EAEGRILTLEFASFYLVNVYTPNA-KRDLSRLPYRLEWEDRFRKYIVQLDEKKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GDLN+A ID +A + + F R F +L G F D FR +P+R +
Sbjct: 140 VIICGDLNVAHQEIDIKNAKSNVGNSGFTHEERGKFNELL---GAGFLDSFRELYPDRTD 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
AYT W + N G RID+ L + + H+ E
Sbjct: 197 AYTWWSFMPKVRERNIGWRIDYFLISEK-------------LRPHLKE------------ 231
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
G+ + + GSDH PVY+ L
Sbjct: 232 -------AGIDSHIMGSDHCPVYVEL 250
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNDG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|151946376|gb|EDN64598.1| AP endonuclease [Saccharomyces cerevisiae YJM789]
gi|349576362|dbj|GAA21533.1| K7_Apn2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 520
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 166/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKAADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L + P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDILDDRIEPGTTQVAIPKFEARYKYNLRN--HNVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|156838338|ref|XP_001642876.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156113453|gb|EDO15018.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 529
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 157/382 (41%), Gaps = 109/382 (28%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ V++NVNG+R Q SQ SL+ + FDAD+I FQE K + + S D
Sbjct: 16 IRFVSFNVNGVRTLFHYQPFSQMNQSLKASFEYFDADVITFQELKTEKYGI-SKWGKVDD 74
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS---TEVALPVAAEEGFTGLL--ETSGS 109
+ SF S + GYSGV C V+ P E V AEEG TG L + G
Sbjct: 75 FYSFISIPSN----KKGYSGVG--CWVRKPEKDHPLYEALKVVKAEEGITGYLTVKVGGK 128
Query: 110 KIME--------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
++ GL++ + DE L +DSEGRCV+ + + ++FNVY P +
Sbjct: 129 EVRYKDDTSQGIGGYESLGLDETNDDEALTLDSEGRCVVVELACNIVVFNVYCPANSGQT 188
Query: 155 TVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-------------G 192
F+L++ VL G+ I ++GD+N ID+ +A G
Sbjct: 189 DDGQLFRLKYLKVLYKRIRNLKALGKNIVLMGDINSCRDLIDQAEALEANMIQITSTTTG 248
Query: 193 PDFAKN------EF--------RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 230
D + EF R ML +S G D R ++R + Y
Sbjct: 249 EDIEEKYSQLAYEFVMNPEAPQRRMLNQMLTDSIIPGISQDGILVDTTRYVQTKKRLKMY 308
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
T W + NYG+RID IL + +LQ ++ + DIL D
Sbjct: 309 TVWNTLKNTRPVNYGSRIDFILLS-------KELQD------YILQADILPD-------- 347
Query: 291 APRWKGGMSTRLEGSDHAPVYM 312
+ GSDH PVY+
Sbjct: 348 -----------VMGSDHCPVYL 358
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H + + K P +GRRF+ C + G + N +CG+F+W
Sbjct: 482 PLCK-HGIEAILKTSKTP-TNYGRRFWSCEKPNGDSGNKAGSCGFFQWV 528
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRIITCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|339482626|ref|YP_004694412.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
gi|338804771|gb|AEJ01013.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. Is79A3]
Length = 257
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 125/273 (45%), Gaps = 54/273 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R + + L ADI+C QE K + +L D++ D Y +F
Sbjct: 1 MQIITLNLNGVRAAAKK--GFFEWLAVQSADIVCVQELKAQLPDLSGDMLSPDSYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV +CR K P ++EG+
Sbjct: 59 CAT-----QKGYSGVGIYCR-KQP------------------------DNVIEGIG---- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ---FKLQFFHVLQ-----GRR 172
+ +ID+EGR + D G+ + ++Y P S + +I F +FF VL+ GR
Sbjct: 85 --IPEIDAEGRFIQADFGNLSIISLYLPSGSSGEHRQIAKFFFMEKFFPVLKTLMASGRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
I + GD NIA ID + + + F R+W ++L + G F DVFR +PE +
Sbjct: 143 IILCGDWNIAHKEIDLKNWRSNQKNSGFLPEERMWLSNVLDDVG--FVDVFRQLNPE-PD 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
YT W + A N G RID+ A P + QK
Sbjct: 200 QYTWWSNRGQAWTKNVGWRIDY-QVATPVIAQK 231
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 131/285 (45%), Gaps = 59/285 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V+ + LD F DADI C QETKL QE + +L + Y
Sbjct: 1 MKLVSWNVNGLRACVN-----KGFLDYFKQTDADIFCVQETKL--QEGQIELELGSDYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F R++ P S + G+E+
Sbjct: 54 YWNYAQ-----KKGYSGTAVFTRLE-PLS------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQG---- 170
DE + EGR + + HF L NVY P A S + R++++ +F LQ
Sbjct: 84 ---DE----EPEGRIITLEFQHFYLVNVYTPNAKRDLSRLSYRLEWEERFRRYLQQLDAV 136
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 229
+ + + GDLN+A ID +A + + F + R + + F D FR +P+R +
Sbjct: 137 KPVIICGDLNVAHQEIDLKNAKSNLGNSGFTLEERGKMTDLLAAGFIDSFRFFYPDRTDV 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
Y+ W + N G RID+ L + + D + + CHV
Sbjct: 197 YSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAE----IDCHV 237
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ ++ GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQ---NIFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 145/343 (42%), Gaps = 110/343 (32%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI+C QETKL QE + +L + +GY
Sbjct: 1 MKLISWNVNGLRSCVG-----KGFLDYFRRADADIVCVQETKL--QEGQLELELPEGYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++C + GYSG A F R + P S + +GL D
Sbjct: 54 YWNCAE-----KKGYSGTAVFTRFE-PLS------------------------VRKGLSD 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
D EGR + + F L NVY P A D R+++++ + L
Sbjct: 84 GD-------DPEGRVLTLEFPAFFLVNVYTPNA-RRDLSRLEYRIAWEERFRAYLKELDA 135
Query: 171 RRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
R+ VV GDLN+A ID R +AG F E R L+E+G F D FR
Sbjct: 136 RKPVVVCGDLNVAHREIDLKNAKFNRGNAG--FTDEEREAMTR--LLEAG--FTDTFRHF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA---GPCLHQKHDLQSHNFVTCHVNECDI 279
+P+R +AYT W + N G RID+ L + P L D
Sbjct: 190 YPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLAPYLE------------------DA 231
Query: 280 LIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL---GEVPE 319
LID + + GSDH PV + + GE PE
Sbjct: 232 LID-----------------SGIMGSDHCPVGLLMRDPGEQPE 257
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VNYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRMVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
+ EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------NKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQF---FHVLQGRR-I 173
D EGR + + F L NVY P +A S + R+ ++++F VL+ ++ +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKVLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RKKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAL-----KKGYSGVVTFSK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP6]
Length = 257
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 119/267 (44%), Gaps = 56/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+++NVNGLR + + G + LL D++C QE K ++ +L GY SFFS
Sbjct: 4 MRILSWNVNGLRA-IYKKGFVDWLLKD-RPDVLCLQEIKATEDQIPKELKGLPGYISFFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R G GVA F ++K+ + LP GF
Sbjct: 62 PG-----ARKGRDGVALFTKIKTLSLEYSLGLP-----GF-------------------- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGR 171
D E R ++ D+G F+LF+VY P + R+ +K++F+ V +GR
Sbjct: 92 ------DDEQRAIVADYGDFLLFDVYFPNGKASKE-RLSYKMRFYDLFLDLMDRLVAEGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I + GD+N A ID P+ + F R W L+E G F D FR HPE
Sbjct: 145 DIVICGDVNTAHKEIDLARPKPNEKISGFLPEERAWI-DRLIEHG--FLDTFRLFHPE-G 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
E Y+ W T A + N G RID+ +
Sbjct: 201 EKYSFWDMKTRARERNVGWRIDYFFVS 227
>gi|444315057|ref|XP_004178186.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
gi|387511225|emb|CCH58667.1| hypothetical protein TBLA_0A08780 [Tetrapisispora blattae CBS 6284]
Length = 527
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/383 (27%), Positives = 152/383 (39%), Gaps = 107/383 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R S+F SL K+ FD DII FQE K + L DG
Sbjct: 17 IRCVTFNVNGIRTFFHFHPFSKFNQSLSKVFQLFDTDIITFQELKTDQTSLIR-WGQVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKI-- 111
Y SF S T + GY+GV + R+ P + V AEEG TG L K+
Sbjct: 76 YYSFISIPIT----KKGYAGVGCWIRIPPPEDPLYNLIKVVKAEEGITGYLTIRNGKLDC 131
Query: 112 --------------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
GL+D + E LK+DSEGRCV+ + + ++ +VY P ++
Sbjct: 132 RYRDCSDQGIGGYDSLGLKD--ETEALKLDSEGRCVLVELACNIVVVSVYCPANSTQTEE 189
Query: 157 RIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDF------------ 195
F+L+F VL G+++ ++GDLN+ ID + F
Sbjct: 190 GELFRLKFLSVLFKRIRNLDTLGKKVILMGDLNVCKDLIDHAEILDKFNIEITNDSQGSV 249
Query: 196 ------AKNEFRIWF-----RSML-----------VESGGSFFDVFRS-KHPERREAYTC 232
K IW R ML + G D R + +R + YT
Sbjct: 250 IERTYDEKVHDFIWAPDAPQRRMLNQILSDSLDSQLARTGILVDSTRVYQGRDRLKIYTV 309
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W + A NYG+RID++ + +Q + DIL
Sbjct: 310 WNTLKNARPINYGSRIDYVFISSKLKNQ-------------IKAADIL------------ 344
Query: 293 RWKGGMSTRLEGSDHAPVYMCLG 315
++ GSDH PVY +G
Sbjct: 345 -------PKVLGSDHCPVYADIG 360
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDKEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|225685280|gb|EEH23564.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb03]
Length = 510
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 138/561 (24%), Positives = 203/561 (36%), Gaps = 139/561 (24%)
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------- 168
S + +DSEGRCVI + F+L VY P + D +R F+ F + +
Sbjct: 18 LSNIDAATLDSEGRCVILEFPAFVLLGVYCPA--NRDEMRDGFRKAFVNAVDARVRNLVG 75
Query: 169 QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLVESGGS---- 214
G+R+ + GDLNI+ + ID A +F R F ++ SGG
Sbjct: 76 MGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQLV--SGGKVIGD 133
Query: 215 ---------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
D+ R HP+RR YTCW A NYG+RID
Sbjct: 134 RDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNARPGNYGSRID---------------- 177
Query: 266 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST 325
+V C + I+ D+ + L GSDH PVY + + + S
Sbjct: 178 ---YVLCSL----IMRDW---------FCASNIQEGLMGSDHCPVYADIKD-----KVSL 216
Query: 326 PSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKFSGSLPAESNSTGDTEDCSENVDRS 385
+ L I+ V+ KRE + SG L E C R
Sbjct: 217 DDMEVHILDILN-PDGMFVNGERKREYSS-ANVLPLSGRLIPEF--------CQRRSIRD 266
Query: 386 LNNYCDSGILQGVYCSSSNQESEGEFTKT-IENCR---------DSANVASHSTITQGSS 435
+ ++ SS S+G+ + N R + + AS ST T
Sbjct: 267 M-----------LFRQSSKGASQGDVNSAGVTNPRVPQKDTLGTNISGPASPSTSTTPKR 315
Query: 436 NHISPFHVDRARKKAKKSQ---------LGQLSLKSFFHKRSNVSHDDNNSITDTSLNVN 486
+ K+ K+SQ GQ SLK FF + + S D+ + S V+
Sbjct: 316 SQQGDDGTTSRSKRLKRSQSSAIATARTKGQKSLKGFFGLKGSGSTADDQT---NSPKVS 372
Query: 487 NSVTDTSLSQEEVPESHHHSNKIPV-TDYSCSVHELHGVNSSVCSHDQDEKKGKRFLDKE 545
+ V V + K P+ YSC + G Q E +
Sbjct: 373 DPVA--------VGNEQQEAAKSPLDITYSCPPGDGCGPEDDETQGQQQEAAEPLANGGD 424
Query: 546 RNNVALL--------EWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARA 597
N+ ++ W RI + P C GH EPC++ V KK G GR F++CAR
Sbjct: 425 SNDDCIVHDPIANKESWSRI--FTKKPAPRCSGHHEPCISLVTKKAGINCGRSFWICARP 482
Query: 598 EGPA----SNPEANCGYFKWA 614
GP+ + + C F W+
Sbjct: 483 LGPSGVKKTGDQWRCDTFIWS 503
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + +GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---NGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 116/267 (43%), Gaps = 63/267 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + ++ FDAD C QETK++ + DL GY +FS
Sbjct: 1 MKFVSWNVNGLRAVLKK--GFEDIVKEFDADFFCIQETKMQEGQADVDL---PGYHQYFS 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ F G
Sbjct: 56 YAE-----KKGYSGTAIFTKHE----------PLSVTYNFEGH----------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR V+ ++ F L NVY P A E R+++++Q+ L+ +
Sbjct: 84 ------DDEGRAVLLEYDKFYLLNVYVPNAQPE-LKRLEYRMQWEDDLRAMLSELAKKKH 136
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPER 226
+ + GDLN+A ID + P F+ E R+ + E G F D FR +PE+
Sbjct: 137 VVMCGDLNVAHEEIDLKNPKTNRGNPGFSDEE-----RAKMTELLGAGFTDTFRHLYPEQ 191
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
AY+ W A + N G RID+ +
Sbjct: 192 EGAYSWWSYRGNARKNNTGWRIDYFVV 218
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|403216708|emb|CCK71204.1| hypothetical protein KNAG_0G01460 [Kazachstania naganishii CBS
8797]
Length = 526
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/379 (25%), Positives = 153/379 (40%), Gaps = 109/379 (28%)
Query: 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++I+T+NVNG+R SL K + F+ADII FQE K+ R+ + + L DG
Sbjct: 14 VRILTFNVNGVRTLFHYKPFHDWTPSLTKTFNYFNADIITFQELKVSRENIDAKLGCIDG 73
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVK------SPFSSTEVALPVAAEEGFTGLLETSG 108
+ SF S T + YSGV + R SPF + + AEEG +G L
Sbjct: 74 FHSFISIPST----KKSYSGVGVWVRKYPSGHPLSPFLTV-----LKAEEGISGYLPIKL 124
Query: 109 SK-------------IMEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPR----A 150
+K I ++ + + LK+DSEGRCV+ + + ++ +VY P
Sbjct: 125 TKNCTVRYRDDPSIGIGGYVDTLEEADALKLDSEGRCVMIELACNTVVISVYCPANSTGT 184
Query: 151 DSEDTVRIQFKLQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----- 200
D + R F F ++ G+R+ ++GDLN+ ID DA + +
Sbjct: 185 DEGELFRCHFLRMLFQRVKNLETMGKRVVLMGDLNVCRDLIDSADAIQELGLGSYKGGCE 244
Query: 201 --------------------RIWFRSMLVES-------GGSFFDVFR-SKHPERREAYTC 232
R + +L +S GG D R + +R + YT
Sbjct: 245 LEDKCAVQAQNFIMDHSKPHRRFLNQLLCDSIIPELAQGGLLLDSTRFIQKRDRLKMYTV 304
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W + N+G+RID IL + N + + + +IL D
Sbjct: 305 WNTQKNTRPMNFGSRIDFILVS-------------NKLQQSIRDSNILPD---------- 341
Query: 293 RWKGGMSTRLEGSDHAPVY 311
++GSDH PVY
Sbjct: 342 ---------VQGSDHCPVY 351
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARNKDIGWRIDYFLCSNP 223
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + +E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + +E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINVEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNVGWRIDYFLCSNP 223
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKIQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGINIGEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +ADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEMEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|256269259|gb|EEU04581.1| Apn2p [Saccharomyces cerevisiae JAY291]
gi|259144827|emb|CAY77766.1| Apn2p [Saccharomyces cerevisiae EC1118]
gi|365767051|gb|EHN08539.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 520
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMGWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F + L+++G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----NELLDAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 147/326 (45%), Gaps = 91/326 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R ++ G KL + + +I+C QETK + ++L +L+ +GY SFF
Sbjct: 1 MRIYSWNVNGIRALYNK-GEFFKLFEE-EPEIVCIQETKAQAEQLSEELLNINGYSSFFE 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GYSGVA + + K P+ + K
Sbjct: 59 ---SADK--KGYSGVAVYSKKK----------PLMVK----------------------K 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF----FHVLQ-----GR 171
++ + DSEGR + ++ FIL N Y P + E R+ +K+ F + L+ G+
Sbjct: 82 FDIERFDSEGRYIELEYEDFILINCYFPNS-QEKGKRLDYKIDFCDEILNYLEERKKSGK 140
Query: 172 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NIA ID + P + E R W + +E+G + D FR +PE
Sbjct: 141 AVIITGDYNIAHKPIDLARPKDNEENPGYLPEE-REWM-TKFIEAG--YVDSFRKFYPEE 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
+ YT W T A + N G RID+ C++++ + ILID
Sbjct: 197 VK-YTWWSYRTRAREKNIGWRIDYF-----CINKESE--------------GILID---- 232
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYM 312
G+ + GSDH P+Y+
Sbjct: 233 ---------SGIRNDVFGSDHCPIYI 249
>gi|406905854|gb|EKD47195.1| hypothetical protein ACD_66C00177G0002 [uncultured bacterium]
Length = 261
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 120/263 (45%), Gaps = 54/263 (20%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
+V++NVNG+R V + G L L+ DI+C QE K + +L +++ DGY ++
Sbjct: 8 LVSWNVNGIRS-VMKKGFL-DWLNKAKPDIVCLQEIKAKPGQLTDEILHPDGYTGIWNSA 65
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
R GYSGVAT + K P+ F G KI+
Sbjct: 66 -----DRKGYSGVATLVKGK----------PLMQISNF-------GEKIL---------- 93
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL-------QGRR-IF 174
D EGR ++T+H F LFNVY P + D R+ +K++F+ G++ +
Sbjct: 94 ----DEEGRIILTEHKDFYLFNVYFPNG-ARDAGRLDYKIKFYKRFYELLDEYAGKKPVM 148
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ GD N A ID + ++ F R W + E G + D FR K+P++R+ Y
Sbjct: 149 ICGDFNTAHHEIDIARPKANETRSGFLPMERKWLDKL--EDKG-YIDTFRFKYPKKRDIY 205
Query: 231 TCWPSNTGAEQFNYGTRIDHILC 253
+ W T A + N G RID+
Sbjct: 206 SWWDVITHARERNVGWRIDYFWA 228
>gi|323356266|gb|EGA88070.1| Apn2p [Saccharomyces cerevisiae VL3]
Length = 520
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQX----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLC+ +E + P GR+F++C R+ G ++N E++CG+F+W
Sbjct: 474 PLCRHGEESMLKTSKTSANP--GRKFWICKRSRGDSNNTESSCGFFQWV 520
>gi|167762826|ref|ZP_02434953.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
gi|167699166|gb|EDS15745.1| exodeoxyribonuclease III [Bacteroides stercoris ATCC 43183]
Length = 266
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 131/298 (43%), Gaps = 63/298 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L D++C QETKL+ ++ ++ + A GY +
Sbjct: 13 MKIITYNVNGLRAAVSK--GLPEWLAKEQPDVLCLQETKLQPEQYPAEALDALGYRHYLH 70
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 71 SAR-----KKGYSGVAILTKRE----------PDYVEYGM-------------GMEEY-- 100
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------HVLQGR- 171
DSEGR V D+G + +VY P S D R FK+++ +L+ R
Sbjct: 101 ------DSEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMEWLEHFRRYAVELLRTRP 153
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI AID D + + F R W L E F D FR HP+ R
Sbjct: 154 KLVLCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDSR 210
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + + P L + L H + C ++++
Sbjct: 211 E-YTWWSYRFNSRAKNKGWRIDYCMASEAVRPMLKEARILND----AVHSDHCPMMLE 263
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 54/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R + + + L+ DAD I QETK + ++++ L D Y +
Sbjct: 1 MKIISWNVNGIRAVMGK--GFAESLEKLDADCILLQETKAQDDQVQTALESIDSYHIY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GR GYSGVA + + P ++ L+D
Sbjct: 57 ---SNSAGRKGYSGVALLTK-QEP---------------------------IQILQDIGI 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRRI 173
DE D EGR + + +FIL NVY P + E VR+ ++ L +F L R+
Sbjct: 86 DEH---DQEGRVIAAEFENFILLNVYVPNS-GEKLVRLDYRKIWDKELLAYFQQLNSRKP 141
Query: 174 FVV-GDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ GD N+A ID ++ K+ + I S ++E+G F D FR HPE
Sbjct: 142 LIACGDFNVAHQEIDIARPKANYNKSAGYTQTEIDGISRMLEAG--FVDTFRHLHPETV- 198
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
AY+ W GA N G RID++L + +
Sbjct: 199 AYSWWSYRAGARAKNIGWRIDYVLTSQALI 228
>gi|406963318|gb|EKD89414.1| hypothetical protein ACD_34C00070G0007 [uncultured bacterium]
Length = 256
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 119/277 (42%), Gaps = 54/277 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVNG R + + + + + DI+C QE K + ++L S+ + GY+ ++
Sbjct: 1 MKITTWNVNGFRAILKK--DFQNSIQNLSPDILCLQELKAKEEQLSSEDISIPGYDRLWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGV T+ + G KI E
Sbjct: 59 SAV-----RPGYSGVGTYVK--------------------------QGVKIAEHSNGLGL 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
DE D EGR + + FILFN+Y P R+ +KL+F+ L +G+
Sbjct: 88 DEF---DVEGRVIQSKLDDFILFNIYFPNGQRGQD-RVDYKLRFYARLLDMCKEEHAKGK 143
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I + GD N A ID + + + F R W + L E+G F D FR +PE+
Sbjct: 144 NIIITGDFNTAHKEIDLANPKENSKISGFLPEERAWIDTYL-ENG--FTDAFRLLYPEKV 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDL 264
+ YT W A G R+D+ L + P + + D+
Sbjct: 201 Q-YTWWTYRVNARARGIGWRLDYYLVSNPFMQRVKDV 236
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNDG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|298283547|gb|ADI72893.1| DNA lyase, partial [Ophiocordyceps unilateralis]
Length = 227
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 41/225 (18%)
Query: 1 MKIVTYNVNGLR-----QRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
M++ T+NVNG+R Q + S + D + DI+ QE K++R++LK D+V+ DG+
Sbjct: 7 MRLTTWNVNGIRNPFSYQPWNTARSFSAMFDILETDIVVMQELKIQRKDLKDDMVLVDGW 66
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET-SGSKIMEG 114
+ +FS K + GYSGV + R P+ AEEG G+L + SG+ +
Sbjct: 67 DCYFSLP----KHKKGYSGVGIYTR-------NATCAPIRAEEGLLGVLPSPSGTPYRDL 115
Query: 115 LED---------FSKDEL----LKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK 161
E+ EL +D+EGRCV+ + F+LF VY P + + +R F+
Sbjct: 116 PENESIGGYPTALQAAELGVDAAALDAEGRCVVIEFPAFVLFGVYSPA--NSNGLRDDFR 173
Query: 162 LQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFAK 197
F L QG+ + +VGDLN+ +D D K
Sbjct: 174 YGFICALDCRIRNLVKQGKNVVLVGDLNVTRHEMDSAPVPEDIRK 218
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 126/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ ++ GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQ---NIFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + +E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKTLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A N G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +ADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSDP 223
>gi|323349886|gb|EGA84099.1| Apn2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 455
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIXEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLVSWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 50/294 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQEL-------KSDLVMA 52
M+I ++NV GLR + +L + + D++C QETKL+ L + L+
Sbjct: 167 MRIASWNVAGLRALMRNSPHALSDFVREHNVDVLCLQETKLQESHLDDPKLKIRGHLLEK 226
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGS 109
+G++S++SC+ R GYSG + F + + ++VA + G ETS S
Sbjct: 227 EGFDSYYSCS----TARKGYSGTSVFVKRRQLIKGSKVAKKQKTLGSYFGKNDERETS-S 281
Query: 110 KIMEGLEDFSKDELL-------------KIDSEGRCVITDHGHFILFNVYGPRADSEDTV 156
++G E+ S D L K DSEGR V+ D F + NVY P + +
Sbjct: 282 NSLKGTEELSIDPHLLVPEGVSFQMNVDKHDSEGRIVVVDFPSFTMCNVYVPNS-GQKLE 340
Query: 157 RIQFKLQ-----FFHVLQGRR------IFVVGDLNIAPAAIDRC-DAGPDFAKN-----E 199
R+ ++ + F +Q ++ + +GDLN+A ++ D AK E
Sbjct: 341 RLSYRTEEWDKDFLSFIQKKQKDRGVPVLWLGDLNVAHTNLEVWNDGAKHLAKQAGVTAE 400
Query: 200 FRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILC 253
R F + L F D FR HP + Y+ W G + N G R+D+ +C
Sbjct: 401 ERASFEAQL---NAGFIDAFRRLHPTAKGHYSYWSQRAGNREPNKGLRLDYFIC 451
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSINADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVITFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|207347830|gb|EDZ73883.1| YBL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 442
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L V P Q + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTQVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMNWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 55/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ +++ DL Y+ +++
Sbjct: 1 MKLVSWNVNGLRACVTK--GFMDYFNEADADIFCVQETKLQAGQIELDL--GPEYQQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S + GLE+ S
Sbjct: 57 YAE-----KKGYSGTAVFTRI-APLS------------------------VRYGLEEDS- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
+ EGR + + F L NVY P A D R+ ++L++ + + +
Sbjct: 86 ------EPEGRVITLEFEDFYLVNVYTPNA-KRDLSRLDYRLEWEERFRTYLLQLDERKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ V GDLN+A ID +A + + F + R + + F D FR +P+R + Y+
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRTDVYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
W + N G RID+ L + + D + + CHV
Sbjct: 199 WWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFTSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P+ G G+E+
Sbjct: 56 CAL-----KKGYSGVVTFSKTK----------PLNVSYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D+EGR + + F L NVY P RA + R+ ++++F L+ + +
Sbjct: 86 ------DTEGRVITCEFDKFYLVNVYTPNSQRALARLEYRMSWEIEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF-----SELLNAG--FIDTFRHFYPT 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ +AYT W + + N G RID+ LC+
Sbjct: 193 KEKAYTWWSYMQQSRERNIGWRIDYFLCS 221
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 99.0 bits (245), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +ADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNNVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNAFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++ + + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQDQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFELFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A N G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCSHP 223
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 55/283 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V++ + DADI C QETKL+ +++ DL Y+ +++
Sbjct: 1 MKLVSWNVNGLRACVTK--GFMDYFNEADADIFCVQETKLQAGQIELDL--GPEYQQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S + GLE+ S
Sbjct: 57 YAE-----KKGYSGTAVFTRI-APLS------------------------VRYGLEEDS- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
+ EGR + + F L NVY P A D R+ ++L++ + + +
Sbjct: 86 ------EPEGRVITLEFEGFYLVNVYTPNA-KRDLSRLDYRLEWEERFRTYLLQLDERKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ V GDLN+A ID +A + + F + R + + F D FR +P+R + Y+
Sbjct: 139 VIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGFIDSFRHFYPDRTDVYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
W + N G RID+ L + + D + + CHV
Sbjct: 199 WWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAE----IDCHV 237
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYVPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSHP 223
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLN---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|406912418|gb|EKD52031.1| hypothetical protein ACD_62C00127G0006 [uncultured bacterium]
Length = 289
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 125/275 (45%), Gaps = 35/275 (12%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R + + D +ADI+C QETK+ +++ + +A Y S
Sbjct: 8 IKLSSWNVNGIRACIKK--GFWDWFDKTEADIVCLQETKITQKDFEK---IAAEYH-LIS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSK---IMEGLED 117
T+++ + + +S S AL A + G++G+L S K + GL D
Sbjct: 62 IADTTNEQIVLFDNKPSSLVPRSS-SIVYYALATAKKAGYSGVLLLSKIKPRSVTIGLGD 120
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------- 168
+ D EGR ++ + F+ Y P SE RI +K+Q+ L
Sbjct: 121 ------PRFDDEGRTIVAHYDDFVFVGCYFPNGGSE-LERIPYKMQYNEFLLQKLESLRE 173
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + I V GD+N+A ID + + F K E R WF L + DVFR K+
Sbjct: 174 EHKHIVVCGDMNVAHTEIDIKNPKANENNSGFTKTE-RDWFSQFL---SHKYVDVFRHKN 229
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
P+ R AYT W G Q N G RID+ + L
Sbjct: 230 PDARHAYTWWSYRPGVRQNNIGWRIDYFVVTEEML 264
>gi|218130897|ref|ZP_03459701.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
gi|217987241|gb|EEC53572.1| exodeoxyribonuclease III [Bacteroides eggerthii DSM 20697]
Length = 254
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 131/295 (44%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
DSEGR + D+G + +VY P S D R FK+ Q+ LQ R
Sbjct: 89 ------DSEGRFMRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFRQYVVELQRTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI AID D + + F R W L E F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P D + N H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKDARILN-DAVHSDHCPMMLE 251
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|363754355|ref|XP_003647393.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891030|gb|AET40576.1| hypothetical protein Ecym_6193 [Eremothecium cymbalariae
DBVPG#7215]
Length = 460
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 159/380 (41%), Gaps = 105/380 (27%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R S + SL +L D DII FQE K+ R + ++ D
Sbjct: 14 VRFITFNVNGIRTLFSHYPFSRMNNSLSQLFKFLDGDIITFQELKIDRLTVSKWGIVDDA 73
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKS---PFSSTEVALPVAAEEGFTGLLET--SGS 109
Y SF T K + GYSGV + R++ P SS + V AEEG TGLL+ +G
Sbjct: 74 Y-SFI----TIPKVKRGYSGVGCWVRIREESDPLSS--LLKVVKAEEGITGLLKVKRNGE 126
Query: 110 KI---------MEGLEDFS-KDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRI 158
+ + G E+ D+ ++DS+GRCVI + ++ + Y P ++
Sbjct: 127 LVSYRDDPTIGIGGYENLPYSDDAEELDSQGRCVIIELACGIVVISTYCPANSTQTEEGE 186
Query: 159 QFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDR-------------CDAGPDFA 196
F+++F +L QG+ + ++GD+N++ ID+ DAG +F
Sbjct: 187 VFRMKFLKLLFKRVRNLKEQGKEVVLMGDINVSRDLIDKAEALEQQRLIIRDADAGLEFE 246
Query: 197 K-----------NEFRI---WFRSMLVES-------GGSFFDVFRSKHPERR-EAYTCWP 234
K + RI ML +S G D R R + YT W
Sbjct: 247 KKYMNAVRGFIYDPLRITCRMLNEMLADSIIPEFARNGILIDSTRYIQGRNRLKMYTVWN 306
Query: 235 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 294
+ + NYG+R+D+I FVT + + NA W
Sbjct: 307 TIMNSRPVNYGSRLDYI-----------------FVTTALQS----------RIRNANIW 339
Query: 295 KGGMSTRLEGSDHAPVYMCL 314
M GSDH PV++ L
Sbjct: 340 PQIM-----GSDHCPVFLDL 354
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 125/270 (46%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLN---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|255719916|ref|XP_002556238.1| KLTH0H08250p [Lachancea thermotolerans]
gi|238942204|emb|CAR30376.1| KLTH0H08250p [Lachancea thermotolerans CBS 6340]
Length = 512
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 153/379 (40%), Gaps = 107/379 (28%)
Query: 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R S SL ++ + F +DII FQE K L S DG
Sbjct: 12 VRFLTFNVNGIRTLFHYHPFSSMNSSLSRVFEYFQSDIITFQELKTDTLSL-SKWGKVDG 70
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S R GY+GV + R+ P S AL V AEEG TG L+ K
Sbjct: 71 FHSFISLPLK----RKGYAGVGCWVRIPKPGDSMFSALQVTKAEEGITGYLQVRVGKTAT 126
Query: 114 ----------------GLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPR----ADS 152
G+ED + + L IDSEGRCV+ + + ++ + Y P D
Sbjct: 127 KYRDNQAVGIGGYEALGIED--EADALSIDSEGRCVMVELKCNMVVISTYCPANSSLTDE 184
Query: 153 EDTVRIQFKLQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGPD------------- 194
+ +RI+F F ++ G+R+ ++GD+N+ ID +A +
Sbjct: 185 GEEMRIRFLKVLFRRIRNLQALGKRVVLMGDINVCRDLIDHAEALKETHIFVTDLTKGTQ 244
Query: 195 -------FAKNEF-------RIWFRSMLVES-------GGSFFDVFRS-KHPERREAYTC 232
F K+ R ML +S GS D R + +R + YT
Sbjct: 245 VEQTYSAFVKDFIFAPSRPARRLLNEMLADSVLKPFAESGSLIDTTRYIQGRDRMKMYTV 304
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W + + NYG+RID+IL K+DL+
Sbjct: 305 WNTLRNSRPVNYGSRIDYILATAGL---KNDLK--------------------------- 334
Query: 293 RWKGGMSTRLEGSDHAPVY 311
K + ++ GSDH PV+
Sbjct: 335 --KADIWPKIMGSDHCPVF 351
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 566 PLCKGHKEPCVARVVK-KPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLCK H E + R K K P G++F+ CAR G +N EA+C +F+W
Sbjct: 466 PLCK-HNENAILRTSKTKNNP--GKKFWACARPTGDENNKEASCSFFQW 511
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQ---NTFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRIITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKTLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|323310178|gb|EGA63370.1| Apn2p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 115/434 (26%), Positives = 165/434 (38%), Gaps = 112/434 (25%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 17 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S +T R GYSGV + R+ AL V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 131
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 132 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 191
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA----------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 192 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTK 251
Query: 197 ----------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
R F +L +S G D R R + YT
Sbjct: 252 LEAQYRDKAIQFIINPDTPHRRIFNQILADSLLPDASKRGILIDTTRLIQTRNRLKMYTV 311
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W NYG+RID IL S C + DIL D
Sbjct: 312 WNMLKNLRPSNYGSRIDFILV------------SLKLERC-IKTADILPD---------- 348
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEV-----PEIPQHSTPSLASRYLPIIRGVQQTLVSVL 347
+ GSDH PVY L V P + P +RY +R ++ +
Sbjct: 349 ---------ILGSDHCPVYSDLDIVDDRIEPGTTXVAIPKFEARYKYNLRN--HDVLEMF 397
Query: 348 MKREVAKQGKSCKF 361
K++ K+ K+
Sbjct: 398 AKKDTNKESNKQKY 411
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|367003866|ref|XP_003686666.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
gi|357524968|emb|CCE64232.1| hypothetical protein TPHA_0H00210 [Tetrapisispora phaffii CBS 4417]
Length = 534
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 159/403 (39%), Gaps = 110/403 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
+++VT+NVNG+R Q SQ SL + D F+ADII FQE K + + S DG
Sbjct: 22 IRLVTFNVNGIRTLFHYQPFSQMNQSLVNVFDYFNADIITFQELKTEKLSI-SKWGKVDG 80
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLETSGSKI 111
Y SF S + GYSGV + R+ P + V AEEG TG L +
Sbjct: 81 YYSFISLPTV----KKGYSGVGCWVRMFPDDHPLHDSMKV--VKAEEGITGCLSVKNGQE 134
Query: 112 -----------MEGLEDFSKD---ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ G D E L +DSEGRCVI + + ++ + Y P +
Sbjct: 135 EIRYKDDQNIGIGGYNSLGYDNESEALHLDSEGRCVIIELACNMVIISTYCPANSTLTDE 194
Query: 157 RIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA---------------- 191
QF+++F VL G+++ ++GDLNI ID+ +A
Sbjct: 195 GQQFRIKFLKVLFKRIRNLESMGKKVVLMGDLNICRDLIDQAEALEVNGIRILPETTGNM 254
Query: 192 ----GPDFAKNEF-------RIWFRSMLVES-------GGSFFDVFRSKHPERR-EAYTC 232
PD A + R ++ +S G D R ++R + YT
Sbjct: 255 IENEYPDLASSFILKPERVQRRLLNQIITDSFIADLSKNGCMIDTTRFIQSKKRLKMYTV 314
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W + NYG+RID IL + ++ +Q+ N +
Sbjct: 315 WNTLKNTRSINYGSRIDFILLSS---GYQNLIQNANIL---------------------- 349
Query: 293 RWKGGMSTRLEGSDHAPVYMCLGEVPEIPQH---STPSLASRY 332
++ GSDH PVY+ + +I + P +RY
Sbjct: 350 -------PQVMGSDHCPVYLDMKLPTDIASNIEIKIPRFEARY 385
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H E CV + + +G++F+ C R +G ++N +++C +F+W
Sbjct: 488 PLCK-HGEKCVLKT-SRTSSNYGKKFWACKRPKGESNNEDSSCDHFEWV 534
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|297539760|ref|YP_003675529.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
gi|297259107|gb|ADI30952.1| exodeoxyribonuclease III Xth [Methylotenera versatilis 301]
Length = 262
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 124/274 (45%), Gaps = 49/274 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++ N+NG+R ++ ++ L + +AD++C QE K ++ ++ +++ GY +F
Sbjct: 1 MKIISLNLNGIRSATNK--GVQTWLQTQNADVVCMQEIKAQQADMTPEMLNPAGYYGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +C+ K P A EG G S
Sbjct: 59 YAE-----KKGYSGVGIYCKAK----------PDAVIEGLGG----------------SN 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-------TVRIQFKLQFFHVLQ-GRR 172
D + IDSEGR + G+ + ++Y P S + +V +F L +++ GR
Sbjct: 88 DGVQDIDSEGRYLECQFGNLSVISLYLPSGSSGEERQAFKFSVMTRFMLHMQALIKSGRE 147
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 227
I + GD NIA D + + + F R W ++ E G + DV+R+ HP
Sbjct: 148 IIICGDWNIAHKEADLKNYKGNKKNSGFLPEERAWLTTLFDEVG--WVDVYRTLHPNTTD 205
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
E YT W + A N G RID+ + A P + K
Sbjct: 206 ECYTWWSNRGQAYAKNVGWRIDYQI-ATPAIAAK 238
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 65/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + G L D DADI C QETKL+ ++ +L +GYE +++
Sbjct: 1 MKLISWNVNGIRACVKK-GFLDYFTD-IDADIFCLQETKLQEGQINLEL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ + G G+E+
Sbjct: 56 YAV-----KKGYSGTAIFTKQK----------PIEVKYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + + F L NVY P + SE R+ +++++ + + +
Sbjct: 86 ------DQEGRVITLEFEDFYLVNVYTPNSQSE-LARLDYRMKWEDIFREYLKDLDNIKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D +N+ + L+ESG F D FR +P
Sbjct: 139 VILCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKM-----TELLESG--FTDSFRYLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E+ +Y+ W A + N G RID+ + + + D Q H
Sbjct: 192 EKEGSYSWWSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIH 234
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/325 (27%), Positives = 136/325 (41%), Gaps = 86/325 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V++ + DAD C QETKL+ ++K L + + Y F+
Sbjct: 1 MKFVSWNVNGLRASVNK--GFLDYFNEMDADFFCLQETKLQEGQIK--LELGEAYHLFWH 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ G G ED
Sbjct: 57 YAE-----KKGYSGTAIFTKHK----------PLSISYGL-------------GEED--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D+EGR + ++ +F L VY P A D R+ F+L + + +G +
Sbjct: 86 -----EDTEGRVITLEYENFYLVTVYTPNA-RRDLSRLDFRLAWEEMFRGYLIKLDEHKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ V GDLN+A ID +A + + F R + L+++G F D FR +P+R +A
Sbjct: 140 VIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDAG--FIDSFRYLYPDRTDA 197
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
YT W + N G RID+ L + R P
Sbjct: 198 YTWWSFMPKIRERNVGWRIDYFLASA-----------------------------RLAPA 228
Query: 290 NAPRWKGGMSTRLEGSDHAPVYMCL 314
+ G+ +++ GSDH PV + L
Sbjct: 229 IV---EAGIDSQILGSDHCPVVLTL 250
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 57/263 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNG+R V + G + L+ S+DAD+IC QETK +++L +L+ Y S++
Sbjct: 3 VKLISWNVNGIRA-VEKKGFV-DLMQSWDADVICLQETKAHKEQLSDELINIGNYTSYWH 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYS VA + R++ P+ EG G+E+F
Sbjct: 61 SGE-----KKGYSSVAIYSRIE----------PIRVIEGL-------------GIEEF-- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D EGR +I ++ F LF VY P A +E RI ++L+F L +
Sbjct: 91 ------DREGRVIIAEYSDFYLFGVYFPNAQAE-LKRIDYRLEFGDALIEQLKEKYSDKA 143
Query: 173 IFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GD N+A AID + P ++ E R W L F +F +++P+
Sbjct: 144 CVLCGDFNVAHKAIDLKNPKANEKNPGYSIQE-RNWMDKFLAAGHVDTFRMF-NQNPDE- 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDH 250
Y+ W GA N G RID+
Sbjct: 201 --YSWWSYRGGARSRNVGWRIDY 221
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 127/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLN---VSYGIDMEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 125/283 (44%), Gaps = 57/283 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL +GY
Sbjct: 1 MKLVSWNVNGLRACVK-----KGFLDYFHEMDADIFCVQETKLQEGQIELDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F + K P S V+ VA E
Sbjct: 53 FWNYAI-----KKGYSGTAVFTK-KKPLS---VSYGVADENE------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
+ EGR + + F L NVY P + D R+ F+L + + +
Sbjct: 86 ---------EDEGRILTLEFEDFYLINVYTPNS-QRDLARLHFRLNWEDRIREYLIQLNK 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ I + GDLN+A + ID +A + + F R + + S F D FR +P+ +
Sbjct: 136 LKPIVLCGDLNVAHSDIDLKNAKSNRGNSGFTEEERGKMTDLLNSGFIDSFRYFYPDMTD 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
YT W + N G RID+ + + H+ D Q H+ V
Sbjct: 196 KYTWWSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM 238
>gi|303288135|ref|XP_003063356.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455188|gb|EEH52492.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 573
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 105/362 (29%), Positives = 143/362 (39%), Gaps = 107/362 (29%)
Query: 18 FGSLRKLLDSFD--AD---IICFQETKLR-------RQELKSDLVMADGYESFFSCTRTS 65
FGS LL S AD ++C QETKL R L + L DG++S + TR
Sbjct: 41 FGSAANLLASLGSRADNIRVVCLQETKLGGGGASEPRAALDARLACPDGWDSVHAVTRDP 100
Query: 66 DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGSKIMEGL-EDFSKD 121
K GY+GVAT+ R + T V VAAE G TG+ E G + E F++
Sbjct: 101 KKA-AGYAGVATYWR----RADTAV---VAAEVGVTGVNADGERGGVGCYGAMRELFTRA 152
Query: 122 ELLKIDSEGRCVITDHGHFILFNVY------GPRADSEDTVRIQFKLQFFHVLQ------ 169
++D+EGRCV+ D G F+L NVY G ++ D R FK F ++
Sbjct: 153 RAAELDAEGRCVLVDFGGFVLVNVYVPATTGGSGSEDVDIARDAFKRDFLLAVETRVDAL 212
Query: 170 ---GRRIFVVGDLNIAPAAID----RCDAGPDFAK---------NEF------RIWFRSM 207
GRR+ GD N+A +D R G +K EF R W
Sbjct: 213 VDAGRRVVACGDWNVARGTMDAAAARTSTGTTGSKLGSSSAAREREFVRACPHRAWLDRQ 272
Query: 208 LVESGGS---------------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHIL 252
L G D R +P+ +A+TCW +GA+ NYG RID
Sbjct: 273 LQRDDGGGDDDDADGGGRRRPRLIDARR--YPKTSDAFTCWHVASGAQLTNYGARIDAFY 330
Query: 253 CAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
D +H V + G++ GSDHAPV++
Sbjct: 331 V---------DEATHARVH-----------------------RVGIAREHPGSDHAPVFL 358
Query: 313 CL 314
Sbjct: 359 AF 360
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 554 WRRIQQLMETSIPLCKGHKEPCVARVVKKP-GPTFGRRFFVCARAEGPASNPEANCGYFK 612
W+RI M + P C+GH E C R VKK FGR FF C R G N +A+CG+F+
Sbjct: 511 WKRIHDRM--APPKCRGHGETCKVRSVKKKESANFGRTFFCCPRPAGARGNKDADCGFFQ 568
Query: 613 WAFSK 617
WA +
Sbjct: 569 WAAGR 573
>gi|241949837|ref|XP_002417641.1| DNA repair (apurinic or apyrimidinic site) lyase 2, putative;
apurinic-apyrimidinic endonuclease 2, putative [Candida
dubliniensis CD36]
gi|223640979|emb|CAX45326.1| DNA repair (apurinic or apyrimidinic site) lyase 2, putative
[Candida dubliniensis CD36]
Length = 422
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 151/384 (39%), Gaps = 109/384 (28%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGS-LRKLLDSFDADIICFQETKLRRQELK--SDLVMA 52
++ VT+NVNG++ + QF L +S ADII QE KL L+ S LV
Sbjct: 25 IRYVTFNVNGVKTIFNYHPWNQFNKDFNALFNSLQADIITLQELKLTETSLQQTSQLVHL 84
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA---LPVAAEEGFTGLLETSG- 108
++SF S T + GYSGV F R P E + AEEG TG L +S
Sbjct: 85 SDFKSFISIPVT----KKGYSGVGLFIRNPKPNDKNENGKHLTVIKAEEGITGWLSSSSK 140
Query: 109 SKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ 159
+KI + G D + L +DSEGRCV + + ++F VY P A+S+ T +
Sbjct: 141 NKIPYRESTDNIGGYTDIEELPGLHLDSEGRCVCVELADNTVIFAVYCP-ANSQCTYEGE 199
Query: 160 -FKLQFFHVLQGR---------RIFVVGDLNIAPAAIDRCDA----------GPDFAKNE 199
F+L F +L R +I ++GD+NIA ID + P F +
Sbjct: 200 LFRLTFMKLLLQRCSNLIKMKKKIVIMGDINIAIDMIDHAETIELGIKENLLKPTFRGHN 259
Query: 200 FRIW----------------------FRSMLV----------ESGGSFFDVFRSKHPERR 227
F + RSM E +D R R
Sbjct: 260 FEVLNYENCVQFRSATEARKLLNKYVIRSMWQDLKDERNNDNEEEPFLYDTTRLVQGRRM 319
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
+ YT W + T A Q N+G+RID IL + + Q +
Sbjct: 320 KMYTVWNTLTNARQVNHGSRIDLILFSDLKMVQ--------------------------R 353
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVY 311
NA W M GSDH PV+
Sbjct: 354 ISNADIWPFLM-----GSDHCPVF 372
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ ++ GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQ---NIFEFKGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 125/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFELFYLVNVYTPNSQQALSRLNYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|304314422|ref|YP_003849569.1| DNA lyase [Methanothermobacter marburgensis str. Marburg]
gi|302587881|gb|ADL58256.1| predicted DNA lyase [Methanothermobacter marburgensis str. Marburg]
Length = 257
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 117/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L +D DI+C QETK ++L L +GY SFF+
Sbjct: 4 IKIISWNVNGLRA-VYRKGFLDWFMDE-KPDILCLQETKASPEQLPRRLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + R+ P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTRIP----------PKSIREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR + D F+L+N+Y P D R+++KL+F+ GR
Sbjct: 92 ------DIEGRIQVADFDDFLLYNIYFPNGKMSDE-RLKYKLEFYDAFLEDVNRERDAGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GD N A ID + + F R W +E+G + D FR + E
Sbjct: 145 NTVICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNNESG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLNVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQF---FHVLQGRR-I 173
D EGR + + F L NVY P +A S + R+ ++++F VL+ ++ +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKVLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 52/292 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR +++ ++ ++ DADII QETK++R++ D GY +++
Sbjct: 8 MKLVTWNVNGLRACMNK--GFKESMEKLDADIISIQETKMQREQASFDF---PGYYEYWN 62
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P S T GL G+E+
Sbjct: 63 SAV-----KKGYSGTAIFSRIK-PLSVT------------YGL----------GIEEH-- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + ++ F L NVY P + E R+ +++ + Q +
Sbjct: 93 ------DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCEDLSKKKT 145
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAYT 231
V GD+N+A ID + + F R L F D FR +P+R AYT
Sbjct: 146 TIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAYT 205
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 283
W A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 206 WWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 256
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 127/269 (47%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR +++ + +S +AD+ C QE+K++R++ + D YE +++
Sbjct: 1 MRLISWNVNGLRACMNK--GFMEFFNSVNADVFCIQESKMQREQAEFDF---PNYEEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F ++K P S E + +A
Sbjct: 56 SAE-----KKGYSGVAIFSKIK-PL-SVEYDMGIAHH----------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + F L NVY P + E R++++++ F L+ ++
Sbjct: 86 ------DKEGRIITAEFSDFYLVNVYTPNSKRE-LERLEYRMEWEDDFRTFLKNLESKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG F E S L++SG F D +R +PE
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSALLDSG--FTDTYRHFYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ AYT W A N G RID+ LC+
Sbjct: 193 KQGAYTWWSYMGKARANNTGWRIDYFLCS 221
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 123/268 (45%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S V+ + EE
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L N+Y P +A S R+ ++++F L+ + +
Sbjct: 86 ------DKEGRIITCEFESFYLVNIYTPNSQQALSRLNYRMSWEVEFRRFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-RGKFNELL---NTGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AYT W A N G RID+ LC+
Sbjct: 194 EKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 128/271 (47%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S DAD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P + + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLNVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQF---FHVLQGRR-I 173
D EGR + + F L NVY P +A S + R+ ++++F VL+ ++ +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKVLELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 126/269 (46%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ S +AD+ C QE+K+++++ D GY F++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFTSVNADVFCIQESKMQQEQNTFDF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV T FS TE P+ G G+E+
Sbjct: 56 CAI-----KKGYSGVVT-------FSKTE---PLNVSYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D+EGR V + F L NVY P RA + R+ ++++F L+ + +
Sbjct: 86 ------DTEGRVVTCEFDKFYLVNVYTPNSQRALARLEYRMSWEVEFRKFLKNLELQKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKANRKNAGFSDEEREKF-----SELLNAG--FIDTFRHFYPT 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ +AYT W A N G RID+ LC+
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCS 221
>gi|124010283|ref|ZP_01694936.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
gi|123983668|gb|EAY24108.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
Length = 259
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 132/297 (44%), Gaps = 55/297 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++YNVNG+R + + L + L + D D++C QE K +++ + + A GY ++
Sbjct: 1 MKIISYNVNGIRAAIRK--GLVEWLKAADCDVLCIQELKALEEQVDTAELEALGYHLYWQ 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+T R GYSGVA F R+K + ++ G D+
Sbjct: 59 PAQT----RKGYSGVAIFSRIKP-------------------------NNVVYGYGDYDW 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
+ ID EGR + D+ +F + +VY P + R+ FK+++ Q
Sbjct: 90 HDTRWIDDEGRIIRADYDNFSVMSVYMPSGTKPE--RVVFKMEWNLAFQQYITELKKVVP 147
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NIA AID + + ++ F R W + E G F D FR +PE
Sbjct: 148 HLIICGDYNIAHQAIDIHNPKSNAKRSGFLPEERNWLTDFM-ELG--FTDSFRYLNPEPH 204
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT--CHVNECDILID 282
YT W T A N G RID+ + + +L+ ++ H + C ILI+
Sbjct: 205 N-YTWWNVRTNARAKNLGWRIDYQMISKSL---NENLKRAVILSEAMHSDHCPILIE 257
>gi|424779917|ref|ZP_18206803.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422843456|gb|EKU27893.1| Exodeoxyribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 253
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 117/263 (44%), Gaps = 51/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + DAD C QETKL QE + DL + +GY +++
Sbjct: 1 MKFISWNVNGLRAAVKK--GFLDVFNQLDADFFCLQETKL--QEGQIDLPL-EGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S + L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KQPALSVQYGL---------------------GIEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
+D EGR + ++ F L Y P A SE RI F+LQ + H L ++
Sbjct: 85 -----LDHEGRLITLEYPEFYLVTCYTPNAQSE-LKRIDFRLQWEAAFREYLHQLDEKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYT 231
+ + GDLN+A ID + P+ K F R+ E + F D FR +PE Y+
Sbjct: 139 VIICGDLNVAHQNIDLKNWRPNRGKAGFSDEERNAFTELLNTGFTDTFRYLYPETTGVYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ L +
Sbjct: 199 WWSYRFHARENNAGWRIDYFLVS 221
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 129/292 (44%), Gaps = 52/292 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR +++ ++ ++ DADII QETK++R++ D GY +++
Sbjct: 1 MKLVTWNVNGLRACMNK--GFKESMEKLDADIISIQETKMQREQASFDF---PGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P S T GL G+E+
Sbjct: 56 SAV-----KKGYSGTAIFSRIK-PLSVT------------YGL----------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + ++ F L NVY P + E R+ +++ + Q +
Sbjct: 86 ------DQEGRVITAEYDDFYLVNVYTPNSQRE-LARLSYRMAWEDAFQAYCEDLSKKKT 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML-VESGGSFFDVFRSKHPERREAYT 231
V GD+N+A ID + + F R L F D FR +P+R AYT
Sbjct: 139 TIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLYPDREGAYT 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 283
W A + N G RID+ L + + D+ N + + C ++++Y
Sbjct: 199 WWSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTIMNEIMGS-DHCPVVLEY 249
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR V + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|119953317|ref|YP_945526.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
gi|119862088|gb|AAX17856.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
Length = 252
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/328 (26%), Positives = 135/328 (41%), Gaps = 91/328 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M ++++NVNG+R + FG + ++ ++ D++C QETK +++L +L+ +GY S+F
Sbjct: 1 MNLISWNVNGIR---AIFGKGFLEFIEKYNPDVLCLQETKAFKEQLPKELINIEGYYSYF 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + GYSGV + +VK P+ E +E F
Sbjct: 58 SKSIIK-----GYSGVGLYSKVK----------PIKLEN--------------MNMEIF- 87
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------G 170
D EGRC+I + FIL N Y P + S R+ +KL+F L+ G
Sbjct: 88 -------DREGRCLIAHYRDFILINAYFPNSQSLRK-RLPYKLEFLMSLESIANMFVTSG 139
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPER 226
+ I + GD NIA ID + F I W + L G + D FR + +
Sbjct: 140 KNIVICGDFNIAHTEIDLANPKTSRESAGFYIEETTWMDNFL---NGGYVDTFRMFNMDP 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
YT W T A + N G RID+ + + F V + IL
Sbjct: 197 GN-YTWWDYKTRARERNIGWRIDYFIV-------------NEFFKSKVKDALIL------ 236
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ GSDH PV++ L
Sbjct: 237 -------------REVMGSDHCPVFLEL 251
>gi|325981921|ref|YP_004294323.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
gi|325531440|gb|ADZ26161.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
Length = 257
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 121/272 (44%), Gaps = 54/272 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NG+R V + + L + AD++C QE K + +L + DGY +F
Sbjct: 1 MQIITLNLNGIRAAVKK--GFLQWLAAQSADVVCVQELKAQLPDLSPAIQSPDGYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C G+ GYSGV + R K +++EG+
Sbjct: 59 CA-----GQRGYSGVGIYTRKKP-------------------------DQVIEGI----- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQ-----GRR 172
+ ID+EGR + D G+ + ++Y P S + + F +FF VLQ R
Sbjct: 84 -GIADIDAEGRFLQADFGNLSIISIYLPSGSSGEHRQAAKFYFMEKFFPVLQNLKISNRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
I + GD NIA ID + + + F R W ++L SG F DVFR + E +
Sbjct: 143 IILCGDWNIAHKEIDLKNWRSNQKNSGFLPEEREWLSNVLENSG--FIDVFRRLNAE-PD 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 260
YT W + A N G RID+ + A P + Q
Sbjct: 200 QYTWWSNRGQAWAKNVGWRIDYQI-ATPAIAQ 230
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 58/296 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++T+NVNGLR +++ + + ADI+C QETK++R++ D GY +++
Sbjct: 1 MKLITWNVNGLRACMNK--GFADFMTAAGADIVCVQETKMQREQASFDF---PGYHEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G E+
Sbjct: 56 SAV-----KKGYSGTAVFSKTE-PLSVT------------YGL----------GQEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + ++ F L NVY P + T R+++++Q+ V Q +
Sbjct: 86 ------DQEGRVITAEYPDFYLVNVYTPNSQRGLT-RLEYRMQWEDVFQDYCAGLARKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ V GDLN+A ID + + F R F+ L F D FRS +P++
Sbjct: 139 VIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQFLDHG---FVDSFRSLYPDKEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
AYT W A + N G RID+ L + + D+ HN V + C + +++K
Sbjct: 196 AYTWWSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEVMGS-DHCPVELEWK 250
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [Methanocella arvoryzae MRE50]
Length = 257
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 56/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNGLR + + + + DI+C QET+ ++L +++ + GY +F+
Sbjct: 4 LEILSWNVNGLRAILKK--GFVDFMQEKNPDILCLQETRASEEQLPPEIMTSWGYHVYFA 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA +VK P++ GF G+ +F
Sbjct: 62 SGE-----KKGYSGVAILSKVK----------PLSVARGF-------------GIPEF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR +I D+G F+L N+Y P + R+ +K++F++ QGR
Sbjct: 92 ------DREGRVLIADYGAFVLLNIYFPNGKASPE-RLAYKMRFYNAFLEYADRLKAQGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+I V GD+N A ID + + F R W ++ + D FR + +
Sbjct: 145 KIVVCGDVNTAHKEIDIARPRENSKISGFLPVERAWMDKLIAH---GYVDTFRLFNDQPG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ YT W + T A + N G RID+ +
Sbjct: 202 Q-YTFWDTVTRARERNVGWRIDYFFVS 227
>gi|435851875|ref|YP_007313461.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
gi|433662505|gb|AGB49931.1| exodeoxyribonuclease III [Methanomethylovorans hollandica DSM
15978]
Length = 252
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 117/267 (43%), Gaps = 60/267 (22%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR + ++ + DI+C QETK + ++L S L DGY+++FS
Sbjct: 1 MLSWNVNGLRAAYKK--GFMEIFTAHGPDILCLQETKAQEEQLPSALRHVDGYKAYFSSA 58
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV + + + L V E G
Sbjct: 59 E-----KKGYSGVGLYTK--------QEPLEVRYELGKA--------------------- 84
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
K D+EGR + +D G FILFNVY P + R+ FK++F+ QG++I
Sbjct: 85 --KFDTEGRVIASDFGDFILFNVYFPNGKASKE-RLDFKMEFYDAFLDHLDALKAQGKKI 141
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKHPERR 227
+ GD+N A ID + + F R W L++ G + D R S P +
Sbjct: 142 IICGDVNTAHKEIDLARPKENEKVSGFLPLERAWI-GKLIDHG--YLDTLRMFSDQPGQ- 197
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W T A + N G RID+ +
Sbjct: 198 --YTWWDMKTKARERNVGWRIDYFFAS 222
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 59/281 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + S DADI C QETKL++ ++ DL +GYE +++
Sbjct: 1 MKLISWNVNGIRACVEK--GFLDFFKSVDADIFCLQETKLQQGQIDLDL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++A G
Sbjct: 56 YAE-----KKGYSGTAVFTKEK----------PLSASYGLN------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ + D EGR + ++ F L VY P + E+ R+++++++ + +
Sbjct: 82 --IEEHDKEGRVITLEYDDFYLVTVYTPNS-KEELARLEYRMEWEDAFRAYLKKLEKNKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ V GDLN+A ID + P F+ E R F +L F D +R +P++
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEE-RAKFSELL---ASGFIDTYRYFYPDKE 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
AY+ W A N G RID+ + + + + HN
Sbjct: 195 GAYSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHN 235
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 61/270 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F+ E R F +L F D FR +P +
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 194 EKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 125/269 (46%), Gaps = 63/269 (23%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR +++ +S DADI C QE+K+++++ + GY F++C
Sbjct: 1 MISWNVNGLRACMTK--GFMDFFNSVDADIFCIQESKMQQEQNTFEF---KGYFDFWNCA 55
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV TF + K P S V+ + EE
Sbjct: 56 I-----KKGYSGVVTFTK-KEPLS---VSYGINIEEH----------------------- 83
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRIFV 175
D EGR V + F L NVY P +A S + R+ ++++F L+ + + V
Sbjct: 84 ----DKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFRKFLKALELKKPVIV 139
Query: 176 VGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
GDLN+A ID R +AG D + +F S L+ +G F D FR +P +
Sbjct: 140 CGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPNKE 192
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+AYT W A + G RID+ LC+ P
Sbjct: 193 KAYTWWSYMQQARDKDIGWRIDYFLCSNP 221
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 124/275 (45%), Gaps = 53/275 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + + + ++ DAD C QETKL+ ++ DL + D Y+ +
Sbjct: 1 MKFISWNVNGLRAVLKK--NFLEVFTDLDADFFCLQETKLQAGQV--DLDLPDYYQYW-- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + K P+A +G GL +F
Sbjct: 55 ----NYAQKKGYSGTAIFTKKK----------PLAVTKGL-------------GLAEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQF--------FHVLQGR 171
D EGR + ++ F L N Y P +S+D + R+ F+LQ+ ++ +
Sbjct: 86 ------DQEGRVLTLEYEDFYLVNCYTP--NSQDKLKRLDFRLQWEAAFSDHLTNLATKK 137
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR-SMLVESGGSFFDVFRSKHPERREAY 230
+ + GDLN+A ID + P+ F I R +M F D FR + ++ AY
Sbjct: 138 PVILCGDLNVAHNEIDLKNPKPNQKNAGFSIQERQAMTALLARGFTDTFRHIYLDKTGAY 197
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
+ W A N G RID+ +C+ L Q D Q
Sbjct: 198 SWWSYRFNARARNAGWRIDYFICSNALLPQVKDSQ 232
>gi|187918395|ref|YP_001883958.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
gi|119861243|gb|AAX17038.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
Length = 253
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 120/267 (44%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M ++++NVNG+R + FG + ++ ++ DI+C QETK +++L +L+ +GY S+F
Sbjct: 1 MNLISWNVNGIR---AVFGKGFFEFIEKYNPDILCLQETKACKEQLPKELISIEGYYSYF 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + GYSGVA + +++ P+ LE +I
Sbjct: 58 SKSIIK-----GYSGVALYSKIE----------PIK--------LENMRMEIF------- 87
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------G 170
D EGRC+I + FIL N Y P + + R+ +KL+F L+ G
Sbjct: 88 -------DREGRCLIAHYRDFILINAYFPNSQALRK-RLNYKLEFLMSLESIANSFVTAG 139
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPER 226
+ + + GD NIA ID + F I W + L G + D FR + E
Sbjct: 140 KNVVICGDFNIAHTEIDLSNPKSSRESAGFYIEETTWMDNFL---NGGYVDTFRMFNGEP 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ L
Sbjct: 197 GN-YTWWDYRTRARERNIGWRIDYFLV 222
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 126/271 (46%), Gaps = 63/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ +S +AD+ C QE+K+++++ + GY F++
Sbjct: 1 MKLISWNVNGLRACMTK--GFMDFFNSVNADVFCIQESKMQQEQNTFEF---KGYFDFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV TF + K P S + G I E
Sbjct: 56 CAI-----KKGYSGVVTFTK-KEPLSVS------------------YGIDIKEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P +A S + R+ ++++F L+ + +
Sbjct: 86 ------DKEGRVITCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F S L+ +G F D FR +P
Sbjct: 140 IVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPN 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+ +AYT W A + G RID+ LC+ P
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNP 223
>gi|255728113|ref|XP_002548982.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
gi|240133298|gb|EER32854.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
Length = 481
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 156/360 (43%), Gaps = 86/360 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-------LLDSFDADIICFQETKLRR---QELKSDLV 50
++ VT+NVNG++ + + K L +S ADII QE KL Q+ K+
Sbjct: 24 IRYVTFNVNGIKT-IFNYHPWNKFKQDYNALFNSLHADIITLQELKLSESTIQQAKNIAH 82
Query: 51 MADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL-ETSGS 109
+AD Y+SF S T + GYSGV F R S + + V AEEG TG L +GS
Sbjct: 83 LAD-YKSFISLPAT----KKGYSGVGLFIRNPSDGKNAKHLTVVKAEEGITGWLCSRNGS 137
Query: 110 KI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQ- 159
+ + G DF K +DSEGRCV+ + + ++F VY P A+S+ T +
Sbjct: 138 NVPYRELNDNIGGYTDFDKQSGQFLDSEGRCVVVELADNTVVFGVYCP-ANSQRTYEGEL 196
Query: 160 FKLQFFHVL---------QGRRIFVVGDLNIAPAAID---------------RCDAGPDF 195
F+L F +L G+++ V+GD+NI ID R +G F
Sbjct: 197 FRLTFMKLLLERCRNLKNMGKKVVVMGDININLDLIDNAEGIELGVKDNSIRRASSGHTF 256
Query: 196 ------------AKNEFRIW-----FRSMLV-------------ESGGSFFDVFRSKHPE 225
+ ++ RI +RSM E +D R
Sbjct: 257 ECMNYAECVKFKSSSDARILLNKYVYRSMWQDLSIDGKEENKDDEQKQFLYDTTRFIQGR 316
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV--NECDILIDY 283
R + YT W + T + + NYG+RID IL + + + ++ + C + + C + DY
Sbjct: 317 RMKMYTVWNTLTNSREINYGSRIDLILFSDESMVK--NISQADIWPCILGSDHCPVFTDY 374
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 114/269 (42%), Gaps = 61/269 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
++++++NVNG+R + + G LD F+ ADI+ QETK + ++L L+ GY S
Sbjct: 4 IRLISWNVNGIRA-IHKKG----FLDWFNEEKADIVNLQETKAKIEQLPKKLINVPGYTS 58
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+F R GYSGVAT+ ++ E G+ G+E
Sbjct: 59 YFHSAE-----RGGYSGVATYTSIE-------------PNEVINGM----------GIEK 90
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------- 168
F D EGR + D F L N+Y P D R+Q+KL F+
Sbjct: 91 F--------DIEGRLIRLDFDDFTLLNIYYPNG-GRDEERLQYKLDFYDAFLDYANDLRD 141
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHP 224
QG+ + + GDLN A ID + + F R W L + D FR H
Sbjct: 142 QGKNLVICGDLNTAHKEIDLARPKQNEDVSGFLPIEREWVSKFL---DNGYVDTFRMLHE 198
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILC 253
+E YT W T A + N G R+D+
Sbjct: 199 NEKEKYTWWSYRTRARERNVGWRLDYFFV 227
>gi|333986432|ref|YP_004519039.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
gi|333824576|gb|AEG17238.1| exodeoxyribonuclease III [Methanobacterium sp. SWAN-1]
Length = 259
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 58/267 (21%)
Query: 1 MKIVTYNVNGLRQRVSQ-FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
++I+++NVNG+R + FG K + DI+C QETK R+++ D+ +GY ++
Sbjct: 4 IRILSWNVNGIRAVHKKGFGEWFK---TEQPDILCVQETKAVRKQVPRDIREFEGYHTYL 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
S + R GYSGVA + R+K P E GF G++
Sbjct: 61 S-----EADRKGYSGVALYTRIK----------PEKVEYGF-------------GID--- 89
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QG 170
K D EGR +I D+G F+LFN+Y P R+Q+K+ F+ +G
Sbjct: 90 -----KFDLEGRTLIADYGDFVLFNIYFPNGKMSPE-RLQYKMDFYDAFMEYADKLKDEG 143
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
+ I V GD+N A ID + + F R W L + D FR + E
Sbjct: 144 KNIVVCGDVNTAHKEIDLARPKENEKISGFLPEERAWIDEFL---NHGYVDTFREFNQEE 200
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A N G R+D+
Sbjct: 201 GQ-YTWWSYRTRARDRNVGWRLDYFFV 226
>gi|393784198|ref|ZP_10372364.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
gi|392666238|gb|EIY59753.1| exodeoxyribonuclease III (xth) [Bacteroides salyersiae CL02T12C01]
Length = 254
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLSQEQPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR V D+G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFVRADYGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQQYVTELQKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W L F D FR+ +PE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 126/286 (44%), Gaps = 61/286 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL YE
Sbjct: 1 MKLVSWNVNGLRACVG-----KGFLDYFKEADADIFCLQETKLQEGQIELDL--GSEYEQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R+K P++ G ME ED
Sbjct: 54 YWNYAE-----KKGYSGTAVFTRIK----------PLSVRYG------------ME--ED 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG--- 170
+ + EGR + + F L VY P A D R+ ++++ F L G
Sbjct: 85 Y--------EPEGRIITLEFEQFYLVTVYTPNA-KRDLSRLDYRMEWEDRFRTYLTGLDA 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ + V GDLN+A ID +A + + + + R + E S F D FR +P+R
Sbjct: 136 VKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTELLASGFIDTFRHFYPDREG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV 274
Y+ W + N G RID+ L + + D + CH+
Sbjct: 196 VYSWWSYMPKIRERNIGWRIDYFLASSRLAPKLQDAG----IDCHI 237
>gi|290789984|pdb|3G91|A Chain A, 1.2 Angstrom Structure Of The Exonuclease Iii Homologue
Mth0212
Length = 265
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 122/267 (45%), Gaps = 58/267 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPR-ADSEDTVRIQFKLQFFHVL---------QG 170
D+EGR I D F+L+N+Y P A SE+ R+++KL+F+ G
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGAMSEE--RLKYKLEFYDAFLEDVNRERDSG 143
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
R + + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 144 RNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDP 200
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A + N G R+D+
Sbjct: 201 GQ-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|290789945|pdb|3FZI|A Chain A, 1.9 Angstrom Structure Of The Thermophilic Exonuclease Iii
Homologue Mth0212
gi|290789950|pdb|3G0A|A Chain A, Mth0212 With Two Bound Manganese Ions
gi|290789955|pdb|3G1K|A Chain A, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789956|pdb|3G1K|B Chain B, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789957|pdb|3G2C|A Chain A, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789958|pdb|3G2C|B Chain B, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789969|pdb|3G3C|A Chain A, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789970|pdb|3G3C|B Chain B, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789976|pdb|3G3Y|A Chain A, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789977|pdb|3G3Y|B Chain B, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789979|pdb|3G4T|A Chain A, Mth0212 (Wt) In Complex With A 7bp Dsdna
gi|290789980|pdb|3G4T|B Chain B, Mth0212 (Wt) In Complex With A 7bp Dsdna
Length = 265
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR I D F+L+N+Y P + R+++KL+F+ GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 139/324 (42%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR + + +L L+S DI+ FQET R + D +M GYE
Sbjct: 1 MKIVSWNINGLRSALKK--NLVNFLESNTFDIVMFQET--RGDIVPLDFIMM-GYEVISF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R R GYSGV T ++K P+ K+++GL
Sbjct: 56 PAR-----RKGYSGVMTLTKIK----------PI---------------KVIKGL----- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
++ + D EGR V + F L N Y PRA ++ R+ FKL+F + + +
Sbjct: 81 -QIKEFDDEGRTVSLELKDFYLINAYFPRA-GDNLERLDFKLKFNNGIENFLLKLREVKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA +ID + P + R WF +L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQSIDAAFSDPKIPGLTPQERAWFTHLL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A + N G R+D+ + + +L+ + DIL D
Sbjct: 195 SWWSYMGNAREKNLGLRLDYCIVS-------EELKD------SIKMADILTD-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------VQGSDHAPIILEL 246
>gi|15678240|ref|NP_275355.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2621258|gb|AAB84718.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 257
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR I D F+L+N+Y P + R+++KL+F+ GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|203284438|ref|YP_002222178.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
gi|201083881|gb|ACH93472.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
Length = 254
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 117/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D EGRC+I + FIL N Y P + S R+ +KL+F L+ G+
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSLESIANSFVTSGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 227
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|423218261|ref|ZP_17204757.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
gi|392627764|gb|EIY21799.1| exodeoxyribonuclease III (xth) [Bacteroides caccae CL03T12C61]
Length = 257
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 134/300 (44%), Gaps = 63/300 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ + DI+C QETKL+ + ++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLEQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVALLTKQE----------PDHVEYGM-------------GMEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +VL+ ++
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVLELQKSRP 142
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---AAGFIDSFRMLYPEK 198
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 284
+E YT W + N G RID+ + + P + L S + H + C ++++ K
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RPLLMSARILNDAMHSDHCPMMLEIK 254
>gi|317476209|ref|ZP_07935460.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
gi|316907620|gb|EFV29323.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
Length = 254
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 130/298 (43%), Gaps = 63/298 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLANEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
DSEGR + D+G + +VY P S D R FK+ Q+ LQ R
Sbjct: 89 ------DSEGRFMRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFRQYVVELQRTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI AID D + + F R W L E F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFLNE---GFIDTFRLLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC---AGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P L L H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNESVRPMLKDARILND----AVHSDHCPMMLE 251
>gi|158522569|ref|YP_001530439.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158511395|gb|ABW68362.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 262
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 121/267 (45%), Gaps = 57/267 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR + + + + DAD++ QETKL+ ++ D+ +GY S+++
Sbjct: 6 IKLVSWNVNGLRAVMGK--GFLETFKNLDADVVGIQETKLQAPQVTGDMANIEGYTSYWA 63
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + GYSGVA F R +PV + TG+ G E++
Sbjct: 64 HATT----KKGYSGVAAFSR-----------MPVKNAK--TGM----------GREEY-- 94
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD-SEDTVRIQFKLQFFHVL---------QG 170
D+EGR V D G FI FN+Y P ED R+ +KL F+ QG
Sbjct: 95 ------DNEGRIVELDLGDFIFFNIYFPNGQMGED--RLTYKLDFYRDFFAYADAYRKQG 146
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
R + + GD N A ID + + + F R W + S + D FR +P+
Sbjct: 147 RSLVICGDYNTAHNEIDLKNPKANENTSGFMRIERDWLDKI---SADGYVDTFRHLYPDT 203
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
+ Y+ W A + N G RID+
Sbjct: 204 VK-YSWWTYRFKARERNVGWRIDYFFV 229
>gi|329955159|ref|ZP_08296116.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
gi|328526158|gb|EGF53177.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
Length = 254
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 129/295 (43%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L + D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLANEQPDVLCLQETKLQPEQYPAEALDASGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 59 SAR-----KKGYSGVAILTKRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + D+G + +VY P S D R FK+ Q+ LQ R
Sbjct: 89 ------DNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFQQYVVELQRTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI AID D + + F R W L F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P + + N H + C ++++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKEARILN-DAVHSDHCPMMLE 251
>gi|159469496|ref|XP_001692899.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277701|gb|EDP03468.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1192
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 70/106 (66%), Gaps = 11/106 (10%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++IV++N+NGL++ ++ FGSL + L +ADI+C QET+L R L+ +L +A G++S+F
Sbjct: 3 LRIVSWNINGLKRVITIFGSLERFLRVLNADIVCLQETQL-RDGLEPELAVAPGWDSYFG 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLET 106
TR R+GYSG ATF R P P++AE+GFTGL E
Sbjct: 62 FTRC----RSGYSGTATFVRRDGPLP------PLSAEDGFTGLWEA 97
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT-VRIQFKLQFFHVLQ---------GR 171
+L +D EGR VITDHG +L NVYGP + T R+++K+ F+ LQ GR
Sbjct: 220 QLRALDGEGRVVITDHGALVLVNVYGPYVGVKRTEERMRYKIAFYRALQHRLDGFLAAGR 279
Query: 172 RIFVVGDLNIAPAAIDRCD 190
R+ V+GD NIAP D D
Sbjct: 280 RLVVLGDFNIAPERRDDSD 298
>gi|153806611|ref|ZP_01959279.1| hypothetical protein BACCAC_00881 [Bacteroides caccae ATCC 43185]
gi|149131288|gb|EDM22494.1| exodeoxyribonuclease III [Bacteroides caccae ATCC 43185]
Length = 263
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 135/301 (44%), Gaps = 63/301 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ + DI+C QETKL+ + ++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLEQENPDILCLQETKLQPDQYPVEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVALLTKQE----------PDHVEYGM-------------GMEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +VL+ ++
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVLELQKSRP 142
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---AAGFIDSFRMLYPEK 198
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 284
+E YT W + N G RID+ + + P + L S + H + C ++++ K
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RPLLMSARILNDAMHSDHCPMMLEIK 254
Query: 285 R 285
+
Sbjct: 255 K 255
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR V + + + DADI C QETKL+ +++ DL GYE +++
Sbjct: 8 VKLISWNVNGLRAVVGK--GFVDIFNELDADIFCLQETKLQAGQIELDL---PGYEQYWN 62
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R+K P++ G
Sbjct: 63 YAE-----RKGYSGTAVFTRIK----------PLSVRYGM-------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-----RIQFKLQFFHVL----QGR 171
++ + D+EGR + ++ F L NVY P +S+D + R++++ F + L Q +
Sbjct: 88 -DIAEHDTEGRVITLEYDSFYLVNVYTP--NSKDGLARLPYRMKWEDDFRNYLKTLEQTK 144
Query: 172 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKH 223
+ + GDLN+A ID R +AG F+ E R+ + E F D FR +
Sbjct: 145 PVVMCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-----RAKMTELLAAGFIDTFRYFY 197
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P++ Y+ W A + N G RID+ + +
Sbjct: 198 PDKTGEYSWWSYRFNARKNNAGWRIDYFIVS 228
>gi|224539496|ref|ZP_03680035.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|423224999|ref|ZP_17211467.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
gi|224518891|gb|EEF87996.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|392634046|gb|EIY27978.1| exodeoxyribonuclease III (xth) [Bacteroides cellulosilyticus
CL02T12C19]
Length = 254
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ AD++C QETKL+ + + + GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLEQEQADVVCIQETKLQPDQYPEEALSTLGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKKE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W L F D FR HPE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P + + N H + C +L+D
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVTEPVRPLLKEARILN-DAVHSDHCPMLLD 251
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 117/268 (43%), Gaps = 60/268 (22%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KIVT+NVNG+R + G + ++ DAD+ C QETK ++L ++ GY+S+F
Sbjct: 96 KIVTWNVNGIRSWLKNGG--LEYIEEEDADVYCLQETKCSEEKLPPEVTNYKGYKSYFLA 153
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGV R P+ E G +
Sbjct: 154 G-----DKEGYSGVGIMSR----------KTPLNVEYGLS-------------------- 178
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQG----RRI 173
L + DSEGR + + F L N Y P A VR+ ++L F L G + +
Sbjct: 179 -LEEHDSEGRVITLEFEEFFLVNSYVPNA-GRGLVRLDYRLTWDRDFRKYLVGLKKKKSV 236
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID + +AG F + E + + L+E G F D FR +PER
Sbjct: 237 ILTGDLNVAHNEIDLKNPKTNKKNAG--FTEEERQ--GLTDLLEEG--FVDTFRKLYPER 290
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W A N G R+D+ + +
Sbjct: 291 EGAYTFWTYMMNARAKNVGWRLDYFIVS 318
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 125/269 (46%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ DAD+ C QE+K+++++ D YE +++
Sbjct: 5 MKLISWNVNGLRACMNK--GFMDFFNTIDADVFCIQESKMQKEQATFDF---PNYEEYWN 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F + K P S VA + G +
Sbjct: 60 SAE-----KKGYSGVAIFSK-KKPLS-------VAYDMGIS------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG----RR 172
D EGR + ++ F L NVY P + E R++++++ F + L+ +
Sbjct: 88 ----HHDKEGRIITAEYNDFFLVNVYTPNSKRE-LERLEYRMEWEDDFRNFLKNLEVTKP 142
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG F E S+L++SG F D FR HP
Sbjct: 143 VIVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FTDTFRYFHPT 196
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ LC+
Sbjct: 197 LEGAYSWWSYMGKARENNTGWRIDYFLCS 225
>gi|45198534|ref|NP_985563.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|44984485|gb|AAS53387.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|374108792|gb|AEY97698.1| FAFR016Wp [Ashbya gossypii FDAG1]
Length = 558
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 138/321 (42%), Gaps = 73/321 (22%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNGLR + SL ++ + F +D+I FQE K + + M DG
Sbjct: 42 LRFVTFNVNGLRTLFGHYPFSRMSNSLAQVFEYFKSDVITFQELKTDKLAIPR-WGMVDG 100
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV-AAEEGFTGLLE-------- 105
Y SF T + GYSGV + R+ ++L V AEEG TG L+
Sbjct: 101 YYSFI----TIPSKKKGYSGVGCWIRIPEAADPLRLSLQVLKAEEGITGRLKIKKDGALV 156
Query: 106 ------TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRI 158
T G +GL S ++DSEGRC++ + ++ +VY P A+S +T
Sbjct: 157 AYCEDPTIGIGGYDGLPYGSDANAQELDSEGRCLLVELACKVVVISVYCP-ANSMNTEEG 215
Query: 159 Q-FKLQFFHVL---------QGRRIFVVGDLNIAPAAIDR--------------CDAGP- 193
+ F+L+F L G+R+ ++GDLN+ ID CD
Sbjct: 216 EVFRLRFLKTLFKRVRNIENLGKRVVLMGDLNVCRDLIDHASCITRNNIKINPDCDGAVL 275
Query: 194 ---------DFAKNEFRIWFR---SMLVES-------GGSFFDVFRSKHPERR-EAYTCW 233
+F RI R ML++S G D R +R + YT W
Sbjct: 276 ERIYQEEAREFIYEPLRIGRRLLNEMLIDSIIPDLAEKGVLIDSTRYAQGRKRLKMYTVW 335
Query: 234 PSNTGAEQFNYGTRIDHILCA 254
+ + NYG+R+D+IL +
Sbjct: 336 DTYRNSRPANYGSRVDYILVS 356
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
++ PLCK H + V + K FG++F+ C R G + +A+CG+F+W
Sbjct: 508 SNAPLCK-HGDRSVLKT-SKTSTNFGKQFWTCKRPRGAPEDIKASCGFFQW 556
>gi|344305039|gb|EGW35271.1| AP endonuclease [Spathaspora passalidarum NRRL Y-27907]
Length = 484
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 139/330 (42%), Gaps = 80/330 (24%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGS-LRKLLDSFDADIICFQETKLRRQELKS--DLVMA 52
++ VT+NVNG + ++F + L + S AD+I QE K+ L + D+
Sbjct: 24 VRFVTFNVNGAKTLFNYHPWTKFNNDLNSVFTSLQADVITLQELKVSPSNLSTIKDVGHL 83
Query: 53 DGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVA---LPVAAEEGFTGLLETSGS 109
Y+SF S R + GYSGV F R+ S V V AEEG TG L S
Sbjct: 84 QNYKSFISLPRV----KKGYSGVGVFVRIPQENESNAVKRSLTVVKAEEGITGWLCPRNS 139
Query: 110 KI----MEG-------LEDFSKDELLKIDSEGRCVITDH-GHFILFNVYGPRADSEDTVR 157
K+ M+ ++D + L +DSEGRCV+ + + ++F++Y P S
Sbjct: 140 KLSYRTMDKEQQIGGYVDDLDSQQGLNLDSEGRCVVIEFTNNLVVFSLYCPANSSGTEEG 199
Query: 158 IQFKLQFFHVL----------QGRRIFVVGDLNIAPAAIDRCDA------------GP-- 193
+F+L+F VL G+ + ++GD+NI+ ID P
Sbjct: 200 EEFRLKFMKVLFERCYNLKFKLGKEVLIMGDINISTDLIDHAQTIEDMVLNRLGKNSPNG 259
Query: 194 ------------DFAK--------NEFRI--WFRSMLVESGGS-------FFDVFRSKHP 224
DF K NE+ I + + ++S S +D R
Sbjct: 260 NNFETINYEQCCDFKKSTPARHLLNEYVIPGLWHDLSLQSSPSDSHRKQFLYDTTRFLQG 319
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
R + YT W + T + N+G+RID IL +
Sbjct: 320 RRMKMYTVWNTLTNSRAVNFGSRIDLILTS 349
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 142/332 (42%), Gaps = 93/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + LD F DADI C QETKL QE + + + + Y
Sbjct: 1 MKLISWNVNGLRACVN-----KGFLDYFKASDADIFCVQETKL--QEGQIGIELGEPYRK 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ + G+E+
Sbjct: 54 YWNYAE-----KKGYSGTAIFTRIEP-------------------------QSVRYGMEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG--- 170
+ EGR + + F L VY P A D R++++L+ F LQ
Sbjct: 84 -------DAEPEGRIITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERFRRYLQELDA 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
+ + V GDLN+A ID +A + + F R + L+E+G F D FR ++P+R
Sbjct: 136 HKPVIVCGDLNVAHQEIDLKNAKSNQGNSGFTPEERDKMTRLLEAG--FIDTFRHRYPDR 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
+AYT W + N G RID+ L V+ +N D + D K
Sbjct: 194 TDAYTWWSFMPKVRERNIGWRIDYFL-----------------VSARLN--DFIKDAK-- 232
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVP 318
+ + GSDH PV + + ++P
Sbjct: 233 -----------IDAAITGSDHCPVILEMEDIP 253
>gi|71905765|ref|YP_283352.1| AP endonuclease [Dechloromonas aromatica RCB]
gi|71845386|gb|AAZ44882.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Dechloromonas aromatica RCB]
Length = 259
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 55/264 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R S+ ++ + + +AD+IC QE K + +L +++ DG ++F+
Sbjct: 2 LRIISLNLNGIRSAWSK--NVLPWVAAQNADVICLQELKAQLPDLTPEMMAPDGMQAFYH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R K P EGF G
Sbjct: 60 CAE-----KKGYSGVGIWSREK----------PDRVIEGFDG------------------ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ D+EGR + D G+ + ++Y P S R + K +F V +GR
Sbjct: 87 ---GEFDAEGRYIRADFGNLSVISLYLPSGSSSPE-RQEAKFRFLDVFFPQMLALRAEGR 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I + GD NIA AID + + + F R W + E G + DV+R HPE
Sbjct: 143 EIVLCGDWNIAHQAIDLKNWKSNQKNSGFLPEERAWLSRLFEEQG--WVDVYRRLHPETT 200
Query: 228 EA-YTCWPSNTGAEQFNYGTRIDH 250
+A YT W + A N G RID+
Sbjct: 201 DACYTWWSNRGQAWAKNVGWRIDY 224
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 133/323 (41%), Gaps = 87/323 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G L ++ DADI C QETKL+ ++ DL DGY +++
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLAFFAET-DADIFCVQETKLQAGQIALDL---DGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + K P S V V +
Sbjct: 56 YAE-----RKGYSGTAVFTK-KEPLS---VRYGVGED----------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ + EGR + ++ F L NVY P + D R+ ++L++ ++ +
Sbjct: 84 ----RTEPEGRILTLEYEDFYLVNVYTPNS-QRDLARLGYRLEWEDRMRAYLTELDKKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ V GD+N+A ID +A + + F R + L+ SG F D FR +PER A
Sbjct: 139 VIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNSG--FIDSFRYFYPEREGA 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
YT W + N G RID+ L + + D
Sbjct: 197 YTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKD-------------------------- 230
Query: 290 NAPRWKGGMSTRLEGSDHAPVYM 312
GM + GSDH PV++
Sbjct: 231 ------AGMYPEIMGSDHCPVFL 247
>gi|339500619|ref|YP_004698654.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
gi|338834968|gb|AEJ20146.1| exodeoxyribonuclease III Xth [Spirochaeta caldaria DSM 7334]
Length = 258
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 119/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDL---VMADG--Y 55
M+I+++NVNGLR V + G ++ + D AD++C QETK +L +L V A+G Y
Sbjct: 1 MRILSWNVNGLRA-VEKKGFVQWMRDE-SADVVCIQETKAHPGQLSPELLEPVDAEGKPY 58
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
+S+++ + + GYSG A + R+ E + M G+
Sbjct: 59 KSYWASAK-----KAGYSGTAIYSRI-----------------------EPLNIRTM-GI 89
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL------- 168
+DF D EGR +I D F L + Y P + E R+ +KL F +
Sbjct: 90 KDF--------DDEGRVLIADFDRFTLISAYFPNS-QEAGARLDYKLAFCDAMLETCNKL 140
Query: 169 --QGRRIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
G+ I + GD NIA ID + P + E R W L + D FR+
Sbjct: 141 VQSGKNIILCGDYNIAHTPIDLARPEDNEENPGYLPEE-RAWMTKFLF---AGYVDTFRA 196
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDH 250
+HP YT W T A + N G RID+
Sbjct: 197 EHPGEGGHYTWWSYRTRARERNIGWRIDY 225
>gi|344200944|ref|YP_004785270.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
gi|343776388|gb|AEM48944.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrivorans SS3]
Length = 253
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 132/325 (40%), Gaps = 84/325 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + L + + D++C QE+K L + + +GY+S ++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLGHWVAATQPDVLCIQESKADPDRLPAAETVLEGYDSQWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R+GYSGV TF + +T + +P
Sbjct: 59 VAE-----RSGYSGVTTFSKAPCRPVATGLGIP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
+ D EGR +ITD G F L+NVY P +DT R+ FKL F+ V GR
Sbjct: 87 ----RFDREGRVLITDCGDFDLYNVYFPNG-KKDTERLAFKLDFYAAFLELINARVATGR 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAY 230
+ GD+N A AID + + F R+ L + + D FR HP+ Y
Sbjct: 142 AVVFCGDVNTAHQAIDLARPKENTKISGFLPEERACLDQWVAAGWVDSFRHLHPD-SITY 200
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W T A N G R+D+ +H+
Sbjct: 201 SWWSQRTNARARNIGWRLDYFW-----IHESL---------------------------- 227
Query: 291 APRWKG-GMSTRLEGSDHAPVYMCL 314
PR +G G++T + GSDH PV++ L
Sbjct: 228 LPRLRGAGIATDVTGSDHCPVWLEL 252
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 122/271 (45%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKVISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + ++ +F L Y P R D T F+ + +
Sbjct: 85 H--------DQEGRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRAYLLELDKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + GDLN+A ID R +AG F+ E + L+ESG F D FR +
Sbjct: 137 KPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTELLESG--FTDTFRYLY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P+ + Y+ W A N G RID+ + +
Sbjct: 191 PDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|374584780|ref|ZP_09657872.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
gi|373873641|gb|EHQ05635.1| exodeoxyribonuclease III Xth [Leptonema illini DSM 21528]
Length = 346
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 121/269 (44%), Gaps = 43/269 (15%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R VS+ G LD D DI C QET+ R ++ + E
Sbjct: 83 LKLYSWNVNGIRA-VSKKGFF-DWLDQADPDIFCLQETRARTPQVVKEEQARPLLEDNRY 140
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C ++ + GYSGVATF + K P + + GF +
Sbjct: 141 CWYWANAEKGGYSGVATFSKYK----------PASYQSGF-----------------IND 173
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-HVL--------QGR 171
+SEGR +IT++ F+L+NVY P R+++KL F+ H L +G+
Sbjct: 174 PADRNYNSEGRVMITEYPGFVLWNVYFPNG-GRGPERVEYKLAFYEHCLDLWQKTRSEGK 232
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREA 229
RI + GD N A ID + F R+ L +ES G + D+FR ++ E
Sbjct: 233 RIIITGDYNTAHKEIDLARPKENSKVTGFLPEERAFLDKMESLG-YIDIFR-RYDASPEK 290
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
YT W T A + N G RID+ + L
Sbjct: 291 YTYWDQFTRARERNAGWRIDYFWISEETL 319
>gi|203287972|ref|YP_002222987.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
gi|201085192|gb|ACH94766.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
Length = 254
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
D EGRC+I + FIL N Y P + S R+ +KL+F V G+
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSFESIANSFVTSGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 227
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|427383096|ref|ZP_18879816.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
gi|425729010|gb|EKU91863.1| exodeoxyribonuclease III (xth) [Bacteroides oleiciplenus YIT 12058]
Length = 252
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 126/295 (42%), Gaps = 59/295 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L+ AD++C QETKL+ + + + GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLEQEQADVVCIQETKLQPDQYPEEAL--KGYKHYLY 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 57 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GMEEY-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D+G + +VY P S D R FK+ + Q
Sbjct: 87 ------DNEGRFIRADYGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTELRKSRP 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI AID D + + F R W L F D FR+ HPE +
Sbjct: 140 KLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFIDTFRALHPELQ 196
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P + + N H + C +L++
Sbjct: 197 E-YTWWSYRFNSRAKNKGWRIDYCMVTEPVRSMLKEARILN-DAVHSDHCPMLLE 249
>gi|329964785|ref|ZP_08301808.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
gi|328524636|gb|EGF51699.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
Length = 254
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 120/270 (44%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L D++C QETKL+ ++ +D + + GY +
Sbjct: 1 MKIITYNVNGLRAAVTK--GLPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYRHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D+G + +VY P S D R FK+ + +VL+ +R
Sbjct: 89 ------DNEGRFIRADYGDLSVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVLELQRTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR HP+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRLLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|21229250|ref|NP_635172.1| exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452211659|ref|YP_007491773.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
gi|20907825|gb|AAM32844.1| Exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|452101561|gb|AGF98501.1| Exodeoxyribonuclease III [Methanosarcina mazei Tuc01]
Length = 258
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 118/265 (44%), Gaps = 56/265 (21%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR V + G L LL+ DI+C QETK+ + +L ++ GY ++F
Sbjct: 7 LISWNVNGLRAAVKK-GFLDLLLEH-RFDIVCVQETKVSQDKLPREVKNIQGYYNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV TF + K P+ E+G G+E F
Sbjct: 65 E-----QNGYSGVGTFSKNK----------PIKLEKGM-------------GIEVF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
D EGR + TD+ F+L N+Y P + R+ +K+ F+ +G+++
Sbjct: 93 ----DREGRFLRTDYEDFVLLNIYFPNGKASQE-RLGYKMAFYDAFLDYANALKSEGKKL 147
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 229
+ GD+N A ID + + F R W L + D FR +PE
Sbjct: 148 VICGDVNTAHKEIDLARPKQNEMISGFLPEERAWMDKFL---AAGYLDSFRMFNPEGGN- 203
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W TGA N G R+D++ +
Sbjct: 204 YSWWSMRTGARSRNVGWRLDYVFVS 228
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 114/264 (43%), Gaps = 59/264 (22%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+I ++NVNG+R +Q L + + AD++C QETK + ++L L+ Y S+FS
Sbjct: 8 RIASWNVNGIR--AAQKKGLLEYMMQEHADVVCLQETKAKPEQLDEQLLNPSDYRSYFSS 65
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
R GYSGVA + R K P S + + G+ +F
Sbjct: 66 AE-----RGGYSGVAVYSR-KKPLSVSPL-----------------------GIAEF--- 93
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRR 172
D+EGR ++ + F+L N Y P + SE R+ +KL + + +GR
Sbjct: 94 -----DAEGRALLVEFSDFVLINGYFPNSQSEGA-RLDYKLAYCDAILKRCNSLVGEGRH 147
Query: 173 IFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ V GD NIA ID + P F E R W S L + D FR + E
Sbjct: 148 VVVCGDYNIAHKPIDLARPKENEGNPGFLPEE-RAWMSSFL---DAGYTDTFRIFNNEGG 203
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHI 251
YT W T + N G R+D+
Sbjct: 204 N-YTWWSYRTKGRERNVGWRLDYF 226
>gi|114330706|ref|YP_746928.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307720|gb|ABI58963.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
Length = 257
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 127/295 (43%), Gaps = 54/295 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T N+NGLR S+ L L +AD+IC QE K ++ ++ + DGY +F
Sbjct: 1 MRIITLNLNGLRSAASK--GLFDWLPQQEADVICVQELKAQQNDINGVMRTPDGYSGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R +P +I+EG
Sbjct: 59 CAV-----KKGYSGVGIYTR-HAP------------------------DQIVEG------ 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQ-----GRR 172
+ +ID+EGR + D G+ + ++Y P S + + F FF +LQ GR
Sbjct: 83 TGIAEIDAEGRFLRVDFGNLTVISIYLPSGSSGEHRQAAKFFFMEHFFPLLQSLAEGGRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD NIA ID + + + F R W ++ E DVFR+ +PE +
Sbjct: 143 VLLCGDWNIAHKEIDLKNWRSNQKNSGFLPEERAWLSTVFDEL--KLVDVFRTINPE-PD 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 283
YT W + A N G RID+ + A P L S + +LIDY
Sbjct: 200 QYTWWSNRGQAWAKNVGWRIDYQI-ATPGLASTATGASIYKTERFSDHAPLLIDY 253
>gi|290789946|pdb|3G00|A Chain A, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789947|pdb|3G00|B Chain B, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789951|pdb|3G0R|A Chain A, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789952|pdb|3G0R|B Chain B, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789960|pdb|3G2D|A Chain A, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789961|pdb|3G2D|B Chain B, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789966|pdb|3G38|A Chain A, The Catalytically Inactive Mutant Mth0212 (D151n) In
Complex With An 8 Bp Dsdna
gi|290789983|pdb|3G8V|A Chain A, The Rationally Designed Catalytically Inactive Mutant
Mth0212(D151n)
gi|290789985|pdb|3GA6|A Chain A, Mth0212 In Complex With Two Dna Helices
gi|290789986|pdb|3GA6|B Chain B, Mth0212 In Complex With Two Dna Helices
Length = 265
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 119/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+++NVNGLR V + G L+ ++ DI+C QE K ++L L +GY SFF+
Sbjct: 4 LKIISWNVNGLRA-VHRKGFLKWFMEE-KPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA + +V P + EGF G+E F
Sbjct: 62 PAE-----RKGYSGVAMYTKVP----------PSSLREGF-------------GVERF-- 91
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D+EGR I D F+L+N+Y P + R+++KL+F+ GR
Sbjct: 92 ------DTEGRIQIADFDDFLLYNIYFPNGKMSEE-RLKYKLEFYDAFLEDVNRERDSGR 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + G+ N A ID + + F R W +E+G + D FR + +
Sbjct: 145 NVIICGNFNTAHREIDLARPKENSNVSGFLPVERAWI-DKFIENG--YVDTFRMFNSDPG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
+ YT W T A + N G R+D+
Sbjct: 202 Q-YTWWSYRTRARERNVGWRLDYFFV 226
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 122/271 (45%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKLISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + ++ +F L Y P R D T F+ + +
Sbjct: 85 H--------DQEGRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRAYLLELDKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + GDLN+A ID R +AG F+ E + L+ESG F D FR +
Sbjct: 137 KPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTELLESG--FTDTFRYLY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P+ + Y+ W A N G RID+ + +
Sbjct: 191 PDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|189466093|ref|ZP_03014878.1| hypothetical protein BACINT_02463 [Bacteroides intestinalis DSM
17393]
gi|189434357|gb|EDV03342.1| exodeoxyribonuclease III [Bacteroides intestinalis DSM 17393]
Length = 254
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/298 (29%), Positives = 125/298 (41%), Gaps = 63/298 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L+ AD++C QETKL+ + + + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLEQEQADVVCIQETKLQPDQYPEEALSALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKRE----------PDHVEYGM-------------GMEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ----GRR---- 172
D+EGR + D G + +VY P S D R FK+ + Q G R
Sbjct: 89 ------DNEGRFIRADFGDISVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVTGLRKSRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR HPE++
Sbjct: 142 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDTFRLLHPEQQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC---AGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P L + L H + C +L+D
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVTELVRPLLREARILND----AVHSDHCPMLLD 251
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 119/265 (44%), Gaps = 55/265 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R + + + DAD C QETK + ++ ++ +GYE +++
Sbjct: 1 MKFISWNVNGIRACLGK--GFLEFFHQIDADFFCIQETKCQAGQV---VLSIEGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + +P S V V AE+ S+
Sbjct: 56 YAQ-----KKGYSGTAIFTK-HTPLS---VKYGVGAED--------------------SQ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + ++ +F L NVY P A D R+ +LQ+ L +
Sbjct: 87 D-------EGRIITLEYKNFYLVNVYTPNA-QRDLARLPLRLQWEDRLANYLQELNCQKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ GDLN+A ID +A + + F R S L+ESG F D FR KHPE +
Sbjct: 139 VVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESG--FVDSFRYKHPEETDH 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
YT W + N G RID+ + +
Sbjct: 197 YTWWSYMNKVRERNIGWRIDYFVVS 221
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 135/325 (41%), Gaps = 89/325 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G L ++ ADI C QETKL+ ++ DL DGY +++
Sbjct: 1 MKFVSWNVNGLRACVKK-GFLAFFAET-GADIFCVQETKLQEGQIALDL---DGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + K P S G+ E
Sbjct: 56 YAE-----RKGYSGTAVFTK-KEPLSVR------------YGVGEN-------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ + EGR + ++ F L NVY P + D R+ ++L++ + ++ +
Sbjct: 84 ----RTEPEGRILTLEYEDFYLVNVYTPNS-QRDLARLGYRLEWENRMRAYLTDLDKKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ V GD+N+A ID +A + + F R + L+ SG F D FR +PER A
Sbjct: 139 VIVCGDMNVAHQEIDLKNAKSNIGNSGFTAEERDKMTGLLNSG--FIDSFRYFYPEREGA 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
YT W + N G RID+ L +
Sbjct: 197 YTWWSYMNKVRERNIGWRIDYFLVSKRL-------------------------------- 224
Query: 290 NAPRWKG-GMSTRLEGSDHAPVYMC 313
A R KG GM + GSDH PV++
Sbjct: 225 -AGRLKGAGMYPEIMGSDHCPVFLA 248
>gi|379010717|ref|YP_005268529.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
gi|375301506|gb|AFA47640.1| exodeoxyribonuclease III [Acetobacterium woodii DSM 1030]
Length = 254
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 134/327 (40%), Gaps = 88/327 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R ++ ++ D++C QETK +L++ L+ GY ++F
Sbjct: 1 MKIISWNVNGIR--AAEKKGFLTFIEEVSPDLLCIQETKAHDHQLEASLLDIPGYFAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + + P+A I GL D +
Sbjct: 59 SGE-----KKGYSGTAVYYKQE----------PLA---------------IRTGLSDAT- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG---------R 171
++EGR +I ++ FIL+NVY P +D R+ FK+ F LQ +
Sbjct: 88 -----FNNEGRTIIMEYPDFILYNVYFPNGQKDDE-RLNFKMAFNQCLQNDIQKLLDAKK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ V GD+NIA ID + + ++ F R W L D +R +HPE
Sbjct: 142 NVIVCGDINIAHQEIDLKNPKENSKRSGFLPEERAWIDDFL---SIGMVDSWRVQHPEEV 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
+ Y+ W A N G RID + P + + V C DIL D
Sbjct: 199 K-YSWWSYRFNARAHNAGWRIDSFFVSEPFMSR---------VDC----TDILND----- 239
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ GSDH P+ + L
Sbjct: 240 --------------VLGSDHCPIVLTL 252
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 124/269 (46%), Gaps = 61/269 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +D F DADI C QETKL+ ++ +L + Y
Sbjct: 1 MKLISWNVNGLRACVT-----KGFMDYFNESDADIFCLQETKLQAGQI--ELPLEGRYSQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F +V+ P + + G+E+
Sbjct: 54 YWNYAV-----KKGYSGTAVFTKVE-PLT------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
S+D EGR + + F L NVY P A D R+ ++L++ +
Sbjct: 84 DSED-------EGRILTLEFDRFYLVNVYTPNA-KRDLSRLGYRLEWEDRFRAYLLELDA 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
+ + V GDLN+A ID +A + + F R + L+ESG F D FR HPER
Sbjct: 136 QKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESG--FIDTFRHLHPER 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAG 255
+A++ W + N G RID+ L +
Sbjct: 194 DDAFSWWSFMPKVRERNIGWRIDYFLASA 222
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 69/281 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR ++ + LD F DAD+ C QETK+ Q+ +++L + +GYE
Sbjct: 1 MKLISWNVNGLRACLN-----KGFLDFFQEADADVFCVQETKM--QQGQAELAL-EGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F+ + GYSG A F R+ PV+ G G+ +
Sbjct: 53 FWCSAE-----KKGYSGTAVFTRIP----------PVSVAYGI-------------GIPE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
F D+EGR + + F L NVY P A T RI F++Q+ + +
Sbjct: 85 F--------DTEGRVITVEFEKFTLINVYTPNAQRGLT-RIDFRMQWEDAFRVYLLRLQE 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG F+ E + L++SG + D FR
Sbjct: 136 SKPVVVCGDLNVAHNEIDLKNYKTNRGNAG--FSDEERGK--MTELLQSGLT--DSFRYL 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
+PE+ YT W A N G RID+ L + Q D
Sbjct: 190 YPEKTGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQIED 230
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 56/293 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVNGLR V++ + D+DI QETKL++ +++ D+ GYE ++
Sbjct: 1 MKLVTWNVNGLRACVNK--GFMDFFNEVDSDIFSVQETKLQKGQIEMDI---PGYEEYWD 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG ATF ++K P++ + TGL E E FSK
Sbjct: 56 YAE-----KKGYSGTATFSKIK----------PISVK---TGLEE----------EKFSK 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
EGR + ++ +F L NVY P + +E R+ +++++ + +
Sbjct: 88 --------EGRVITAEYENFYLVNVYTPNSQNE-LKRLDYRMEWEDYFADYLCELDKVKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ + GDLN+A ID + + F I R + L++ G F D +R +P+
Sbjct: 139 VIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKMTSLLKRG--FVDSYRYLYPDIEGV 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
YT W A + N G RID+ + + + D++ + V + C +L+D
Sbjct: 197 YTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKIFSDVMGS-DHCPVLLD 248
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 120/263 (45%), Gaps = 51/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ +++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPEQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + ++ +F L Y P + E R+++++ + + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLEYRMAWEDAFRNYLLELDKKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y+
Sbjct: 139 VILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ + +
Sbjct: 199 WWSYMGKARERNTGWRIDYFITS 221
>gi|401840624|gb|EJT43369.1| APN2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 520
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 113/433 (26%), Positives = 171/433 (39%), Gaps = 112/433 (25%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +++NVNG+R Q SQ SL+ + D F ADII FQE K + + S DG+
Sbjct: 18 RFLSFNVNGIRTFFHYQPFSQMKQSLKSVFDFFKADIITFQELKTEKLSI-SKWGKVDGF 76
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---- 110
SF S + R GYSGV + R+ L V AEEG TG L K
Sbjct: 77 YSFISIPQI----RKGYSGVGCWIRILDKDHPLYHGLQVVKAEEGITGYLTIKNGKQSVV 132
Query: 111 -----IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVR 157
+G+ D ++ L++DSEGRCV+ + ++ +VY P +
Sbjct: 133 SYRDDANQGIGGYDSLDPDLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKG 192
Query: 158 IQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFA------------ 196
F+++F VL G++I ++GD+N+ ID D +F+
Sbjct: 193 ELFRIKFLKVLLRRVKNLDKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDL 252
Query: 197 KNEFR--------------------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCW 233
+ +R I F S+L ++ G D R R YT W
Sbjct: 253 EQRYRDEAIQFIVNPETPHRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVW 312
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 293
S + NYG+RID IL S C + DIL D
Sbjct: 313 NSLKNSRPSNYGSRIDFILA------------SSKLEQC-IKAGDILPD----------- 348
Query: 294 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST-----PSLASRYLPIIRGVQQTLVSVLM 348
+ GSDH PVY L + + ST P +R +R + ++ +
Sbjct: 349 --------ILGSDHCPVYSDLDLRDQEVKSSTTEISIPKFEARNKFNLR--NRNVLEMFA 398
Query: 349 KREVAKQGKSCKF 361
K+E+ K+ K ++
Sbjct: 399 KKELGKESKQQQY 411
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H E + R K G++F++C R+ G +SN E++CG+F+W
Sbjct: 474 PLCK-HGEESILRT-SKTSTNPGKKFWICKRSRGDSSNTESSCGFFQWV 520
>gi|393788369|ref|ZP_10376499.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
gi|392656042|gb|EIY49683.1| exodeoxyribonuclease III (xth) [Bacteroides nordii CL02T12C05]
Length = 254
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 114/269 (42%), Gaps = 56/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L L D++C QETKL+ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPDWLAQEQPDVLCLQETKLQPEQYPGEAFEAVGYKGYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTRRE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELQKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI AID D + + F R W L F D FR+ +PE++
Sbjct: 142 NLILCGDYNICHEAIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFVDSFRTLYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 126/279 (45%), Gaps = 64/279 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ DAD+ C QE+K+ R + SD V DGY F+
Sbjct: 1 MKMISWNVNGLRACMTK--GFMDFFNTIDADVFCIQESKMHRSQ--SDFVF-DGYYQFW- 54
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GYSG S TE L V + G
Sbjct: 55 ----NEAEKKGYSGTII-------LSKTE-PLSVCNDMG--------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQG----RRI 173
+ D EGR ++ ++ F L NVY P + E T R +++ F L+G + +
Sbjct: 82 --IAHHDKEGRIIVAEYATFFLVNVYTPNSKRELERLTYRQEWEDDFRSFLKGLEQYKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F E S+L++SG F D +R +P++
Sbjct: 140 IVCGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MSVLLDSG--FIDSYRYFYPDK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHIL---CAGPCLHQKH 262
AYT W A Q N G RID+ L C L + H
Sbjct: 194 EHAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAH 232
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 110/264 (41%), Gaps = 58/264 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R V + G+ + + + D DI+C QETK ++L ++ GY SFF
Sbjct: 1 MKILSWNVNGIRA-VEKKGAFQDVFEKLDPDILCLQETKASEEQLTDNIKKIPGYYSFFE 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + K P S + + +
Sbjct: 60 SAV-----KKGYSGVALYSKTK-PLSIKNMGIDI-------------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR + +F L N Y P + E R+++KL F L G
Sbjct: 88 -----FDDEGRYIEAKFENFTLINCYFPNS-QEKGKRLEYKLNFCSDLLDYCNSLVENGE 141
Query: 172 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
I + GD NIA ID + P F E R W L + D+FR +P
Sbjct: 142 NIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEE-REWMSKFL---NSGYIDIFRYLYPNE 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDH 250
+ YT W A + N G RID+
Sbjct: 198 IK-YTWWSYRFKAREKNIGWRIDY 220
>gi|375358853|ref|YP_005111625.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
gi|301163534|emb|CBW23085.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
Length = 253
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR+ +P+++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPQKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR ++ ++ +FDAD C QE KL+ ++ D+ DGY S+++
Sbjct: 1 MKFVSWNVNGLR--AAREKGFDEIFKNFDADFFCLQEIKLQEGQIDMDM---DGYYSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG A F R++ P+ F GL K
Sbjct: 56 YAK-----RKGYSGTAIFTRIE----------PIDV---FYGL---------------GK 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
+E D EGR + ++ F + VY P + E +R+ ++ + FF L ++
Sbjct: 83 EEH---DDEGRLITLEYPEFYVSTVYTPNSKQE-LLRLDYRQEWEDEFREFFKNLDAKKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD+N+A ID + P F E + ++L+++G F D FR +P++
Sbjct: 139 VIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKF--TLLLDAG--FTDTFRYFYPDKE 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W A + N G RID+ L +
Sbjct: 195 NEYSWWSYRFNARKNNTGWRIDYFLVS 221
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 93/326 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R +++ +S ADI C QETK+++ +++ DL +GY +++
Sbjct: 1 MKLVSWNVNGIRACLAK--GFMDFFNSVSADIFCIQETKVQQGQVQLDL---EGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R K P++ +G G+ E
Sbjct: 56 YAI-----RKGYSGTALFTREK----------PLSVVDG-IGMNEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQ----GRRI 173
D+EGR + ++ F L VY P R + R++++ F L+ + +
Sbjct: 86 ------DNEGRVLTAEYDKFYLVTVYTPNSQRGLTRLDYRMKWEDDFREYLKRLDTTKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F E +ML++SG F D FR +P++
Sbjct: 140 IICGDLNVAHREIDIKNPEANRRNAG--FTDEEREK--MTMLIQSG--FTDSFRYLYPDK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
+AYT W A + N G RID+ L + + D
Sbjct: 194 TDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRD----------------------- 230
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYM 312
GM + + GSDH PV++
Sbjct: 231 ---------AGMYSEIYGSDHCPVFL 247
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 124/269 (46%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++NVNGLR + + + L+ ADI C QETK++ ++ +GY +F++
Sbjct: 1 MRLVSWNVNGLRACMQK--GFKDFLEQSGADIFCVQETKMQPEQANFAF---EGYHAFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV T + + P++ G G+ E
Sbjct: 56 SAV-----KKGYSGVLTLSKEE----------PLSVRYG-IGIAEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR V+ ++ F L NVY P A +R+ ++L + +G +
Sbjct: 86 ------DLEGRVVVCEYSQFYLVNVYVPNAQ-RGLLRLPYRLSWEKAFRGFLSGLVAHKG 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG F+ E R F ++L E F D +R +PE
Sbjct: 139 VLVCGDLNVAHTEIDLTNPQANRYNAG--FSDPE-RHAFSALLQEG---FIDTYRHFYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++EAYT W A + N G RID+ L +
Sbjct: 193 QKEAYTWWSYIGQARERNVGWRIDYFLAS 221
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 50/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V++ G+ +S DAD+ C QETKL+ +++ L + + Y+ F++
Sbjct: 1 MKFVSWNVNGLRACVNK-GAFLPYFESVDADVFCVQETKLQAGQIQ--LPIGEAYQQFWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R+ P+ GF
Sbjct: 58 YAE-----RKGYSGTAVFTRMP----------PLDVRYGFGN------------------ 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+D EGR + + F + VY P A D R+ ++L++ + +
Sbjct: 85 ----GVDPEGRIITLEFPSFYVVTVYTPNA-KRDLSRLPYRLEWEDAFRAYLCALDREKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ GDLN+A ID +A + + F R+ + E F D FR+ +P+ + YT
Sbjct: 140 VIACGDLNVAHQEIDIKNAKSNRGNSGFTDEERAKMTELLDAGFVDTFRALYPDVTDKYT 199
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W + + N G RID+ L +
Sbjct: 200 WWSNMPRVRERNIGWRIDYFLVS 222
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 91/326 (27%), Positives = 137/326 (42%), Gaps = 89/326 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + +D F DADI C QE+KL QE + +L++ +GY
Sbjct: 1 MKLVSWNVNGIRACVK-----KGFMDYFKEVDADIFCIQESKL--QEGQIELIL-EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + GL D
Sbjct: 53 YWNYAI-----KKGYSGTAVFTK-KEPLS------------------------VRYGLGD 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
+ + EGR + ++ F L NVY P + D R+ ++L++ + Q
Sbjct: 83 N------ETEPEGRILTLEYEGFYLVNVYTPNS-QRDLARLPYRLEWEERIREYLLGLDQ 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ + + GDLN+A ID +A + + F R + GS F D FR K+PE
Sbjct: 136 IKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGFVDAFRYKYPEAEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
AYT W + N G RID+ + + + D Q H CDI+
Sbjct: 196 AYTWWSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIH---------CDIM-------- 238
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
GSDH PV + L
Sbjct: 239 ---------------GSDHCPVALEL 249
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 134/295 (45%), Gaps = 60/295 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L +ADI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNADIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P S + GLE+
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK-PLS------------------------VHYGLEENE- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
+ EGR + + +F L NVY P R S R++++ +F LQ + +
Sbjct: 86 ------EPEGRTITLEFENFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQLDALKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
V GDLN+A ID +A ++ F R S+L+++G F D FR+ +P+R + Y
Sbjct: 140 IVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAG--FIDTFRTFYPDRTDVY 197
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 282
+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 198 SWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|53713851|ref|YP_099843.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60682064|ref|YP_212208.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|265764197|ref|ZP_06092765.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|336410171|ref|ZP_08590652.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|383118771|ref|ZP_09939511.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|423250356|ref|ZP_17231372.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|423255857|ref|ZP_17236786.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|423256970|ref|ZP_17237893.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|423266064|ref|ZP_17245067.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|423271726|ref|ZP_17250696.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|423276491|ref|ZP_17255432.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|423284050|ref|ZP_17262934.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
gi|52216716|dbj|BAD49309.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60493498|emb|CAH08285.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|251946092|gb|EES86499.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 3_2_5]
gi|263256805|gb|EEZ28151.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|335945633|gb|EGN07443.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_56FAA]
gi|387778446|gb|EIK40541.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T00C01]
gi|392649939|gb|EIY43611.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T12C07]
gi|392652665|gb|EIY46323.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL03T00C08]
gi|392696582|gb|EIY89774.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T00C42]
gi|392696803|gb|EIY89991.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL05T12C13]
gi|392701772|gb|EIY94926.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis CL07T12C05]
gi|404580596|gb|EKA85305.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 615]
Length = 253
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPEQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR+ +P+++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPQKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEDFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S T G I E
Sbjct: 56 SAV-----KKGYSGTAVFTRI-APLSVT------------------YGLNIEEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVL-----QGRR 172
D EGR + + F L NVY P + E +R+ +++++ F Q +
Sbjct: 86 ------DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRMRWEDEFRTYLTALDQSKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GD+N+A ID R +AG D +++ + L+E+G F D FR +P
Sbjct: 139 VIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHIYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ +AYT W A N G RID+ L +
Sbjct: 192 DKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|386859763|ref|YP_006272469.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
gi|384934644|gb|AFI31317.1| Exodeoxyribonuclease III [Borrelia crocidurae str. Achema]
Length = 254
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 116/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M ++++NVNG+R VS G L + + DI+C QETK +++L +L+ +GY S+FS
Sbjct: 2 MNLISWNVNGIRA-VSNKGFL-NFIAEYSPDILCLQETKALKEQLPRELIDIEGYYSYFS 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + +++ P+ E +E F
Sbjct: 60 KSIIK-----GYSGVAIYSKIE----------PIKLEN--------------MNIEIF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG---------R 171
D EGRC+I + FIL N Y P + S R+ +KL+F L+ +
Sbjct: 89 ------DREGRCIIAHYHDFILINAYFPNSQSLRK-RLNYKLEFLMSLESIANAFVTSEK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 227
+ V GD NIA ID + F + W + L + D FR + E
Sbjct: 142 NLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFL---NRGYVDTFRMFNKEPG 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 199 N-YTWWDYKTRARERNVGWRIDYFVI 223
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 136/327 (41%), Gaps = 95/327 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + LD F +ADI C QE+KL+ +++ +L DGY
Sbjct: 1 MKLVSWNVNGIRACVK-----KGFLDFFMEENADIFCIQESKLQEGQIELNL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P+ G G
Sbjct: 53 YWNYAE-----KKGYSGTAVFTKEK----------PLYVSYGIAG--------------- 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
+ + EGR + + +F L NVY P + D R+ ++L++ + Q
Sbjct: 83 ------RETEPEGRSLTLEFENFYLLNVYTPNS-KRDLARLPYRLEWEDEIREYILELEQ 135
Query: 170 GRRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + + GDLN+A ID R + G +E R S+L E F D FR +PE
Sbjct: 136 KKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSE---GFVDSFRYLYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
+ AYT W + N G RID+ + + ++H L S + CDI+
Sbjct: 193 QEGAYTWWSYMAKVRERNIGWRIDYFIVSDKL--KEHILDSKIY-------CDIM----- 238
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYM 312
GSDH P+ +
Sbjct: 239 ------------------GSDHCPIML 247
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEDFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S T G I E
Sbjct: 56 SAV-----KKGYSGTAVFTRI-TPLSVT------------------YGLNIEEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVL-----QGRR 172
D EGR + + F L NVY P + E +R+ +++++ F Q +
Sbjct: 86 ------DQEGRIITLEFEDFFLVNVYTPNSKRE-LLRLDYRMRWEDEFRTYLTALDQSKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GD+N+A ID R +AG D +++ + L+E+G F D FR +P
Sbjct: 139 VIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHIYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ +AYT W A N G RID+ L +
Sbjct: 192 DKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|313147282|ref|ZP_07809475.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|423277611|ref|ZP_17256525.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
gi|424663743|ref|ZP_18100780.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|313136049|gb|EFR53409.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|404577433|gb|EKA82171.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 616]
gi|404586808|gb|EKA91367.1| exodeoxyribonuclease III (xth) [Bacteroides fragilis HMW 610]
Length = 253
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 117/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ L + L + D++C QETKL+ + ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVNK--GLPEWLAEENPDVLCLQETKLQPDQYPAEAFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +++ P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILTKIE----------PDHIEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D+EGR + D G + +VY P S D R FK+ + Q
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEAFQKYVTELRKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR+ +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRTLYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPV 227
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +S+ ++ DADI C QETK+ + + L+ GYE +++
Sbjct: 1 MKLISWNVNGLRACLSK--GFEGFFNTADADIFCIQETKMHPDQAEIGLI---GYEKYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+ +P S ++ GL
Sbjct: 56 SAV-----KKGYSGTAVFTRI-TPLS------------------------VIYGLN---- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
+ + D EGR + + +F L NVY P + E +R+ +++++ + Q +
Sbjct: 82 --IEEHDQEGRLITLEFENFFLVNVYTPNSKRE-LLRLDYRMRWEDEFRTYLITLNQSKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GD+N+A ID R +AG D +++ + L+E+G F D FR +P
Sbjct: 139 VIICGDINVAHQEIDIKNPKTNRRNAGFTDEERDKM-----TALLEAG--FTDTFRHIYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ +AYT W A N G RID+ L +
Sbjct: 192 DKIDAYTWWSYMMNARARNIGWRIDYFLVS 221
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + ++ +F L Y P R D T F+ + + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRNYLLELDKKKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTC 232
+ GDLN+A ID + + F R+ + E G F D FR +P+ E Y+
Sbjct: 140 ILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQYSW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ + +
Sbjct: 200 WSYMGKARERNTGWRIDYFITS 221
>gi|333030586|ref|ZP_08458647.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
gi|332741183|gb|EGJ71665.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
Length = 253
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 123/268 (45%), Gaps = 58/268 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIVTYNVNGLR ++ L + L + D++C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIVTYNVNGLRAATTK--GLPEWLAETNPDVVCIQETKLQPDQYPAEPYEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA +V+ P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKVE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+Q+ +VL+ R+
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGD-ARQDFKMQWLSDFQNYVLELRKTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W S L ++G F D FR H E
Sbjct: 142 NLILCGDYNICHEEIDIHDPKGN-AKNSGFLPEERAWMTSFL-DTG--FSDSFRRFHAET 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ YT W A N G RID+ + +
Sbjct: 198 QK-YTWWSYRFKARSKNKGWRIDYCMVS 224
>gi|402695438|gb|AFQ90567.1| APN2, partial [Hymenoscyphus pseudoalbidus]
gi|402695442|gb|AFQ90570.1| APN2, partial [Hymenoscyphus pseudoalbidus]
Length = 456
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 109/295 (36%), Gaps = 88/295 (29%)
Query: 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLL----------------ETSGSKIMEGL 115
YSGVA + R P+ AEEG TG+L G L
Sbjct: 1 YSGVAIYTR-------NSACAPIRAEEGITGILTPPNSSTSFCSLPEDQRIGGYPTAAQL 53
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL------- 168
+FS D +DSEGRCVI + +L VY P + D R +F++ F + L
Sbjct: 54 SNFSLDAA-ALDSEGRCVILEFPALVLIGVYCPA--NRDESREEFRIGFLNALDARVRNL 110
Query: 169 --QGRRIFVVGDLNIAPAAIDRCDA----------GPDFAKNEFRIWFRSMLV------- 209
G+R+F+ GDLNI +D G ++ +LV
Sbjct: 111 VAMGKRVFLTGDLNIIREKMDTAYGEEQLKKHGMTGEEYLSTPAMRMLNQLLVGGRVIGQ 170
Query: 210 ----ESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
E +D+ R+ HP R +TCW + A N+G+RID++LC+ C + D
Sbjct: 171 KDDEEDPAIMWDICRAFHPNREGMFTCWDTKKNARPGNFGSRIDYVLCSLDCYNWFRD-- 228
Query: 266 SHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEI 320
+ L GSDH PVY E EI
Sbjct: 229 ------------------------------SNIQEGLMGSDHCPVYAVFKEKVEI 253
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 119/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + ++ +F L Y P R D T F+ + + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRELARLDYRMTWEDAFRNYLLELDKKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPE 225
+ GDLN+A ID R +AG F+ E R+ + E G F D FR +P+
Sbjct: 140 ILCGDLNVAHQEIDLKNPKMNRKNAG--FSDEE-----RAKMTELLGAGFTDTFRHLYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
E Y+ W A + N G RID+ + +
Sbjct: 193 AIEQYSWWSYMGKARERNTGWRIDYFITS 221
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 119/263 (45%), Gaps = 51/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + ++ +F L Y P + E R+++++ + + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLEYRMAWEDAFRNYLLELDKKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y+
Sbjct: 139 VILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEEYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ + +
Sbjct: 199 WWSYMGKARERNTGWRIDYFITS 221
>gi|307353485|ref|YP_003894536.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156718|gb|ADN36098.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 254
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 88/327 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + G L ++ + DI+C QETK +L S + GY S+FS
Sbjct: 1 MKLVSWNVNGLRA-VEKKGFL-DFVNEYQPDILCVQETKAHEDQLSSSIRHPKGYFSYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + R + S +P
Sbjct: 59 SAE-----RKGYSGTALYSRFEPESISYGFGVP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVL----QGR 171
++DSEGR +I ++ F L+++Y P R+QFK+ F+ H + G+
Sbjct: 87 ----ELDSEGRIIIAEYSDFNLYDIYFPNGKMSKE-RLQFKMDFYEECLRHAVSDLDSGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD+N A ID + + F R W +L F D FR E
Sbjct: 142 NVIICGDVNTAHKEIDLARPKENSKVSGFLEIERKWIDRLL---DAGFKDSFRMFTSEGG 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
Y+ W +GA + N G RID+ + + ++ V IL
Sbjct: 199 -YYSWWDLKSGARERNVGWRIDYFFVS-------------DGISGRVKSASIL------- 237
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+++EGSDH PV + L
Sbjct: 238 ------------SQVEGSDHCPVELEL 252
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQ----GRRI 173
+ EGR + + F L NVY P R S R++++ +F LQ + +
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQLDASKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTC 232
V GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+
Sbjct: 140 IVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYSW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 282
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 200 WSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 120/280 (42%), Gaps = 59/280 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F DADI C QETKL+ +++ +L +GY
Sbjct: 1 MKLISWNVNGIRACVK-----KGFLDFFKETDADIFCLQETKLQEGQIELEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----RKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + +F + VY P R D +F+ + +
Sbjct: 86 ---------DQEGRVITLEFDNFYMVTVYTPNSKNELLRLDYRMVWEDEFRSYLLRLNET 136
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 227
+ + V GDLN+A ID + + F I R S L++SG F D FR +PE
Sbjct: 137 KPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTLLDSG--FIDTFRFFYPELE 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
AY+ W A + N G RID+ L + D + H
Sbjct: 195 GAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIH 234
>gi|344228427|gb|EGV60313.1| hypothetical protein CANTEDRAFT_127448 [Candida tenuis ATCC 10573]
Length = 556
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 132/329 (40%), Gaps = 79/329 (24%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ V++N+NG++ + F + K+ S DII QE KL L S +L
Sbjct: 26 IRFVSFNINGVKTLGNYFPWNKLNNNFDKIFQSLKGDIISLQELKLSSGNLSSTNLCNLR 85
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP---VAAEEGFTGLLETS--- 107
Y+SF S K + GYSGV F R+ +V V AEEG TG L +
Sbjct: 86 KYKSFISLP----KLKKGYSGVGLFVRIPEESEDDKVKYNLNVVKAEEGITGYLRINNDT 141
Query: 108 ----------------GSKIMEGLEDFSKDELLKIDSEGRCVITDHGH-FILFNVYGPRA 150
G E E+F ++ L+ID EGR V+ + ++F++Y P
Sbjct: 142 GHHTKFLDLDDNEAIGGYVTNENYEEFDEELALQIDREGRAVVVELASGLVIFSLYCPAN 201
Query: 151 DSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA---------- 191
+ + K +F +L G++I V+GD+NI+ ID+ D
Sbjct: 202 SMQTEEGERLKNKFMELLIKRCQNLIKLGKQIMVLGDINISLDLIDQADGINERLNKKLI 261
Query: 192 -----GPDFAKNEF-------RIWFRSM-----------LVESGGS---FFDVFRSKHPE 225
G F K R F M + E GS +D R
Sbjct: 262 KYSNDGEAFEKTNHKECVKFKRERFSRMHLSKFVFSPLNVPEITGSERFLYDTTRVFRGR 321
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
E YTCW + G+ Q N+G+RID IL
Sbjct: 322 TMEIYTCWNTLNGSRQTNFGSRIDLILTT 350
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 124/269 (46%), Gaps = 61/269 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +D F DADI C QETKL QE + L + + Y
Sbjct: 1 MKLISWNVNGLRACVN-----KGFIDYFKASDADIFCVQETKL--QEGQICLELGESYRQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ P S + G+E+
Sbjct: 54 YWNYAE-----KKGYSGTAVFTRIE-PLS------------------------VRYGMEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
+ EGR + + F L VY P A D R++++L+ + L
Sbjct: 84 -------DREPEGRMITLEFESFYLVTVYTPNA-KRDLSRLEYRLEWEERFRRYLQELDA 135
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
R+ + V GDLN+A +D +A + + F R + L+++G F D FR ++P+R
Sbjct: 136 RKPVIVCGDLNVAHQEMDLKNAKSNHGNSGFTPEERDKMTRLLDAG--FTDTFRHRYPDR 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAG 255
+AYT W + N G RID+ L +
Sbjct: 194 TDAYTWWSFMPKVRERNIGWRIDYFLVSA 222
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 65/286 (22%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + DADI C QE+KL+ ++ +L DGY S+++
Sbjct: 5 KLISWNVNGLRACVKK--GFLEYFKEIDADIFCIQESKLQEGQIDLEL---DGYTSYWNY 59
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + + P+ + G G+E+
Sbjct: 60 AE-----KKGYSGTAVFTKEE----------PLTVKRGI-------------GIEEH--- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRRI 173
D+EGR + ++G+F L NVY P + + R+ +++ + V + + +
Sbjct: 89 -----DNEGRVLTLEYGNFYLVNVYTPNS-KQGLERLDYRMVWEDVFRKYLKELEKNKPV 142
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GDLN+A ID R +AG D +++ S L+E+G F D +R +P+
Sbjct: 143 IICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKI-----SELLEAG--FIDTYRYFYPD 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
+ Y+ W A N G RID+ L + + D + H VT
Sbjct: 196 KEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMEVT 241
>gi|302877288|ref|YP_003845852.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580077|gb|ADL54088.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 254
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 113/262 (43%), Gaps = 53/262 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ N+NG+R S+ + L DAD+IC QE K + ++ ++ GY +F
Sbjct: 1 MRIISVNLNGIRSASSK--GFYEWLAQQDADVICLQELKAQAADMTEHMLTPLGYHGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +CR LP + GL G+E F
Sbjct: 59 YAE-----KKGYSGVGIYCR----------ELP---KNVIVGL----------GIEQF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQ-----GRR 172
D+EGR + D + + ++Y P S + V+ F F L+ GR
Sbjct: 89 ------DAEGRYLCADFADYSVVSLYLPSGSSGEERQGVKFSFMEAFLPHLRELRASGRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ V GD NIA ID + + + F R W + E G F DVFR HPE E
Sbjct: 143 VIVCGDWNIAHKEIDLKNWRGNKKNSGFLPEERAWLTQLFDEVG--FVDVFRRVHPE-LE 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDH 250
AYT W + A N G RID+
Sbjct: 200 AYTWWSNRGQAWAKNVGWRIDY 221
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 126/269 (46%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL GY+ +++
Sbjct: 1 MKLISWNVNGLRAVVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDL---PGYKDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 56 YAV-----KKGYSGTAIFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + +F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFENFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVKKLDETKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P+
Sbjct: 139 VILCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 193 LEDAYSWWSYRMNARARNTGWRIDYFVVS 221
>gi|319902391|ref|YP_004162119.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
gi|319417422|gb|ADV44533.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
Length = 267
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 128/295 (43%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ +D + + GY+ +
Sbjct: 14 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPADALDSLGYKHYLY 71
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R + GYSGVA + + P E G G+E++
Sbjct: 72 SAR-----KKGYSGVAILAKRE----------PDRVEYGM-------------GMEEY-- 101
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
DSEGR + D+ + +VY P S D R FK+ + +VL+ +R
Sbjct: 102 ------DSEGRFLRADYDDLSIVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVLELQRTRP 154
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR HP+++
Sbjct: 155 KLILCGDYNICHEPIDIHDPIRNATNSGFLPEEREWMTRFL---DAGFTDSFRFLHPDKQ 211
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + P D + N H + C +L++
Sbjct: 212 E-YTWWSYRFNSRARNKGWRIDYCMVNEPVRPMLKDARILN-DAVHSDHCPMLLE 264
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQ----GRRI 173
+ EGR + + F L NVY P R S R++++ +F LQ + +
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNTKRDLSRLPYRLEWEDRFRSYLQQLDASKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTC 232
+ GDLN+A ID +A ++ F R + + G F D FR +P+R E Y+
Sbjct: 140 IICGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTEVYSW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 282
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 200 WSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|389581306|ref|ZP_10171333.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
gi|389402941|gb|EIM65163.1| exodeoxyribonuclease III [Desulfobacter postgatei 2ac9]
Length = 263
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 130/328 (39%), Gaps = 87/328 (26%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+K++++NVNG R + + F S+ + D DI+ QETKL+ + ++ YESF
Sbjct: 7 LKLISWNVNGFRAVLKKDFFDSVTGM----DPDILMLQETKLQEDQRSDQMIRFGDYESF 62
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + + GYSGV ++ R+ +T+ P
Sbjct: 63 WNYSTV----KKGYSGVVSYTRIAPETVTTQFGKP------------------------- 93
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------Q 169
+ D EGR + D FILFN+Y P D R+ +KL F+ +
Sbjct: 94 ------EYDGEGRIIRMDFEPFILFNIYFPNGQMSDE-RLSYKLGFYDWFLDYAQKLRDE 146
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPER 226
G + V GD N A ID + P+ ++ F R +L V G + D FR +PE
Sbjct: 147 GNSLIVTGDFNTAHNEIDLKNPAPNAKRSGFLRIERDILDKMVNMG--YVDTFRHFYPEA 204
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
E Y+ W A + N G RID+ DL +N V + DI
Sbjct: 205 VE-YSWWSYRFNARKNNAGWRIDYFFVT-------RDLIENNIVKDAFIDNDIF------ 250
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
GSDH PV + +
Sbjct: 251 -----------------GSDHCPVGLVV 261
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 49/275 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR V + + DADI C QETKL QE + DL + GY +++
Sbjct: 1 MKLVSWNVNGLRACVRK--GFLNYFEEVDADIFCVQETKL--QEGQIDLNLP-GYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ + G G+E+
Sbjct: 56 YAE-----KKGYSGTAVFTKDK----------PLDVKYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG----RRI 173
D EGR + + F L NVY P + E T R+ ++ +F + L+ + +
Sbjct: 86 ------DKEGRVITLEFEDFYLVNVYTPNSQRELTRLDYRMTWEDEFRNYLKELDSIKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTC 232
+ GDLN+A ID + + F R + E G+ F D FR +P++ +AYT
Sbjct: 140 ILCGDLNVAHKEIDLKNPSTNRRNAGFTDEERGKMTELLGTGFIDTFRYFYPDKEDAYTW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
W A N G RID+ + + + D Q H
Sbjct: 200 WSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIH 234
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 61/281 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYE-SF 58
+KI+++NVNGLR + + S +L + D D++C QETKL+ ++ L + DGY ++
Sbjct: 243 VKILSWNVNGLRALL-KGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A R+K P++ G G+ E
Sbjct: 302 WTCSVS----KLGYSGTAIISRIK----------PISVRYGL-GISEH------------ 334
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQ 169
D EGR V+ + F L NVY P + + R+ +++ + + +
Sbjct: 335 --------DGEGRVVMVEFDSFFLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEK 385
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + + GDLN A ID R AG NE R F + ++ G F D FR K
Sbjct: 386 SKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQK 440
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
HP+ YT W G + N G R+D+ L + + HD
Sbjct: 441 HPD-VVGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 51/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DADI C QETKL+ ++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFNELDADIFCLQETKLQPDQISLEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R+K P++ G G+E+
Sbjct: 56 SAV-----KKGYSGTAVFTRIK----------PLSVTNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + ++ +F L Y P + E R+ +++ + + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVCCYTPNSQRE-LARLDYRMNWEDAFRNYLLELDKKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID + + F R+ + E G F D FR +P+ E Y+
Sbjct: 139 VILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGFTDTFRHLYPDAIEQYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ + +
Sbjct: 199 WWSYMGKARERNTGWRIDYFITS 221
>gi|254580459|ref|XP_002496215.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
gi|238939106|emb|CAR27282.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
Length = 500
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 135/322 (41%), Gaps = 77/322 (23%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +T+NVNGLR Q S S+ + D F+ADII FQE K+ R L + D +
Sbjct: 17 RFLTFNVNGLRTLFHYQPFSNMNQSIENVFDYFNADIITFQELKVERSAL-TKWGKLDNF 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEG 114
SF S + R GYSGV + R+ +L V AEEG TG L G KI +
Sbjct: 76 YSFISIP----QARKGYSGVGCWIRILPKDHPLHNSLKVIKAEEGITGRL---GVKIGKD 128
Query: 115 LEDFSKD-----------------ELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
L +S D E LKIDSEGR V+ + + ++ VY P +
Sbjct: 129 LVTYSSDSSIGIGGYESLPYNDEQEALKIDSEGRSVMVELASNTVVICVYCPANSTLSEE 188
Query: 157 RIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGP-------------- 193
F+++F +L G+++ ++GDLN+ ID ++
Sbjct: 189 GELFRVKFLKILFKRIRNLDAMGKKVVLMGDLNVCRDLIDHAESLERASMPITDNMGGLE 248
Query: 194 ----------DFAKN---EFRIWFRSMLVESG-------GSFFDVFRSKHPERR-EAYTC 232
DF N R F ML +S G D R K +R + YT
Sbjct: 249 IEEKFQNSCRDFIINPDVPHRRLFNQMLSDSMFSEMALEGVLIDTTRLKQSRKRLKMYTV 308
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W + + NYG+RID +L +
Sbjct: 309 WNTFKNSRPANYGSRIDFVLTS 330
>gi|392401590|ref|YP_006438202.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
gi|390609544|gb|AFM10696.1| exodeoxyribonuclease III Xth [Turneriella parva DSM 21527]
Length = 270
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 53/281 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R + + G L KLL + DI+ QE K + +L L+ DGYE+ +
Sbjct: 14 MRIASFNVNGIRA-IEKKGELVKLLAAEKPDIVFLQEIKAKPDQLSDALLKPDGYEAHYH 72
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG R +GL + +++ G+ D++
Sbjct: 73 SAE-----KPGYSGTGVLVR--------------------SGLF--AKMQVLRGMPDWN- 104
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQFKLQFFHVLQG-----RR 172
D EGR + + G ++F Y P D ++ F F + +R
Sbjct: 105 ------DHEGRVLGVEAGDLVIFGNYFPNGGKSDAAWREKLVFYDHFHQYIAALRKKKKR 158
Query: 173 IFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GDLN+A ID + F E R W ++ + ++ DVFRS++PE
Sbjct: 159 VLFTGDLNVAHNPIDLARPKENEKHVGFLPEE-RAWVDRLVAD---NWVDVFRSRYPE-T 213
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
+YT W + A + N G RID+ + P + +++ N
Sbjct: 214 VSYTWWQMQSRARERNIGWRIDYFIVDKPLYPKVREIRHLN 254
>gi|401626731|gb|EJS44656.1| apn2p [Saccharomyces arboricola H-6]
Length = 524
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 114/431 (26%), Positives = 170/431 (39%), Gaps = 118/431 (27%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SL + D F ADII FQE K + + S DG
Sbjct: 17 VRFLTFNVNGIRTFFHYQPFSQMNKSLTSVFDFFQADIITFQELKTEKLAI-SKWGKVDG 75
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP---VAAEEGFTGLLETSGSK- 110
+ SF S +T R GYSGV C ++ P + + P V AEEG TG L K
Sbjct: 76 FYSFISIPQT----RKGYSGVG--CWIRIPDENHLLYHPLQVVKAEEGITGYLTIKNGKQ 129
Query: 111 -IMEGLED--------------FSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
++ +D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 130 SVISYRDDANQGIGGYDSLDPELDQKSALELDSEGRCVMVELACGIVVISVYCPANSNLS 189
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFA--------- 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 190 EKGELFRMKFLKVLLRRIRNLDKMGKKIVLMGDVNVCRDLIDSADTLEQFSIPISDPMGG 249
Query: 197 ------------------KNEFRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 230
+ R F +L +S G D R R Y
Sbjct: 250 EELEARYRDKAMQFIINPETPHRRIFNQILSDSLLPDASKEGILIDTTRLIQTRNRLRMY 309
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
T W S NYG+RID IL + K +++ N + DIL
Sbjct: 310 TVWNSLKNLRPSNYGSRIDFILISSKF---KQLIKAGNILP------DIL---------- 350
Query: 291 APRWKGGMSTRLEGSDHAPVYMCLG------EVPEIPQHSTPSLASRYLPIIRGVQQTLV 344
GSDH PVY L E+ I + STP +RY +R ++
Sbjct: 351 -------------GSDHCPVYADLDLKDHKMELNTI-KVSTPKFEARYKYNLRN--HNVL 394
Query: 345 SVLMKREVAKQ 355
+ K+++ K+
Sbjct: 395 EMFAKKDLNKE 405
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614
PLCK H E C+ + K P G++F++C R+ G + N E++CG+F+W
Sbjct: 478 PLCK-HGEQCILKTSKTPSNP-GKKFWICNRSRGDSGNTESSCGFFQWV 524
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 124/280 (44%), Gaps = 54/280 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R + + + + S D D++C QETK + +++ L +GY F
Sbjct: 1 MKLVSWNVNGVRAAIKK--DFLQSMASLDCDVLCLQETKAQDEQVIEALCELNGYHIF-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T+ + GYSG + R++ P+ + G+E+
Sbjct: 57 ---TNSAVKKGYSGTSIITRIQ----------PIDVTKDM-------------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D EGR + + L VY P + D R+ ++ L + L+ ++
Sbjct: 89 ------DQEGRVLCAEFSDLYLVTVYTPNS-GNDLKRLSYRAQWDADFLSYIKKLEEKKP 141
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GDLN A ID P++ K+ + I LV +G + D FR HPE+ +
Sbjct: 142 VVICGDLNAAHRDIDLARPKPNYNKSAGYTQQEIDGIDNLVAAG--YVDTFRYVHPEKVK 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
Y+ W GA + N G RID+ L + Q HD + HN
Sbjct: 200 -YSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHN 238
>gi|449494709|ref|XP_004159624.1| PREDICTED: LOW QUALITY PROTEIN: apurinic endonuclease-redox
protein-like [Cucumis sativus]
Length = 501
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 61/281 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYE-SF 58
+KI+++NVNGLR + + S +L + D D++C QETKL+ ++ L + DGY ++
Sbjct: 243 VKILSWNVNGLRALL-KGSSAVELAEREDFDVLCLQETKLQEKDILNITKSLVDGYHYTY 301
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A R+K P++ G G+ E
Sbjct: 302 WTCSVS----KLGYSGTAIISRIK----------PISVRYGL-GISEH------------ 334
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQ 169
D EGR V+ + F L NVY P + + R+ +++ + + +
Sbjct: 335 --------DGEGRVVMVEFDSFXLLNVYVPNS-GDGLKRLSYRITQWDPSLSNYIKELEK 385
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + + GDLN A ID R AG NE R F + ++ G F D FR K
Sbjct: 386 SKPVILTGDLNCAHQEIDLYNPAGNRKSAG---FTNEERQSFETNFLQKG--FVDTFRQK 440
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
HP+ YT W G + N G R+D+ L + + HD
Sbjct: 441 HPD-VVGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHD 480
>gi|294495018|ref|YP_003541511.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
gi|292666017|gb|ADE35866.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
Length = 244
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 103/246 (41%), Gaps = 54/246 (21%)
Query: 23 KLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVK 82
+ L S DI+C QETK R +L ++ DGY S+FS R GYSGVA + +V+
Sbjct: 11 EWLTSESPDILCLQETKARPSQLPPNIRRIDGYYSYFSAAE-----RKGYSGVALYSKVQ 65
Query: 83 SPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFIL 142
P GF G+ F D EGR +I HF+L
Sbjct: 66 ----------PQEVRYGF-------------GINRF--------DHEGRILIAFFDHFVL 94
Query: 143 FNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGP 193
FN+Y P +S D R+Q+K+ F+ +G + V GDLN A AID
Sbjct: 95 FNIYFPNGNSSDE-RLQYKMDFYGAFLEYTQELRQEGYSVVVCGDLNTAHKAIDIARPKQ 153
Query: 194 DFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
+ ++ F R W L F D FR + E YT W T A N G R+D
Sbjct: 154 NEKRSGFLPVEREWIDKFLSH---GFLDTFRLFNEEEGN-YTWWDLKTRARDRNVGWRLD 209
Query: 250 HILCAG 255
+ +
Sbjct: 210 YFFVSA 215
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 122/268 (45%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ +L DGY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDFFHEQNADIFCLQETKLQEGQIELEL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F + K P++ G G LE+
Sbjct: 53 FWNYAL-----KKGYSGTAVFTKQK----------PISVRYG-VGELES----------- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG------- 170
+ EGR + + F L NVY A D R+ +L++ L+
Sbjct: 86 ---------EDEGRIITLEFDSFYLVNVYTINA-KRDLSRLPERLEWEDALKEYLLDLDR 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
+ + GDLN+A A +D +A + + F + R + L+ESG F D FR +PER
Sbjct: 136 HKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESG--FIDSFRYLYPER 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+A+T W N G RID+ + +
Sbjct: 194 TDAFTWWSYMRDVRARNIGWRIDYFIVS 221
>gi|154286664|ref|XP_001544127.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
gi|150407768|gb|EDN03309.1| hypothetical protein HCAG_01173 [Ajellomyces capsulatus NAm1]
Length = 616
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 96/198 (48%), Gaps = 51/198 (25%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D+ +ADI+ FQETK++R++L+ D+V+ +G++ FFS + K
Sbjct: 3 MFDALEADIVIFQETKIQRKDLQDDMVLVNGWDCFFSLPKYK----------------KG 46
Query: 84 PFSSTEVALPVAAEEGFTGL--LETSGSKIME--GLEDFSKD-----------------E 122
P S + P+ AEEG TG+ L TSGS + D ++ +
Sbjct: 47 PNS---ICCPIRAEEGITGILCLPTSGSNLSSPTSFRDLPEEAQIGGYPTAEQLALSDVD 103
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
+DSEGRC+I + F+L VY P + D R F+ F +VL G+R+
Sbjct: 104 AATLDSEGRCMILEFPAFVLIGVYCPA--NRDETRDGFRTGFVNVLDARVRNLATMGKRV 161
Query: 174 FVVGDLNIAPAAIDRCDA 191
V+GDLNI+ + ID A
Sbjct: 162 IVMGDLNISGSQIDSARA 179
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 20/184 (10%)
Query: 440 PFHVDRARKKAKKSQL-GQLSLKSFFHKRSNVSHDDNNSITDTSLNVNNSVTDTSLSQEE 498
P + R+ A ++ GQ +LK FF ++ T S + N + +S + E
Sbjct: 339 PKRLKRSESSATTTKAKGQKTLKGFFGPKTTPC------TTVASADDENDHSKSSATTEG 392
Query: 499 VPESHHHSNKIPVTDYSCSVHELHGVNSSVCS----HDQDEKKGKRFLDKERNNVALLEW 554
+ K P + C + +G S + +D+D R D N + W
Sbjct: 393 GSPQKGTAIKPPCSSGGCCDSQENGCQQSQTAGPPAYDKDNDNSGRVHDPIANKES---W 449
Query: 555 RRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPA----SNPEANCGY 610
++ + P C GH EPC++ V KK G GR F++C+R GP + + C
Sbjct: 450 SKL--FTKKPPPKCDGHDEPCISLVTKKAGINRGRSFWICSRPLGPTGIKKTGDQWRCDT 507
Query: 611 FKWA 614
F W+
Sbjct: 508 FIWS 511
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 66/286 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG R +++ ++ +ADI C QE+KL +++ L +GY +F+
Sbjct: 1 MKLISWNVNGFRSCLTK--GFLDFFNTVEADIFCIQESKLSAGQIELSL---EGYTQYFN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + S + +P+
Sbjct: 56 YAE-----RKGYSGTAVFTKKQPLTCSFGMGIPLH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D EGR + ++ F L N+Y P + +E R++++L ++ L +
Sbjct: 86 ------DKEGRMITLEYDEFYLINLYAPNSQAE-LARLEYRLTWEEDFRRYVQTLNSHKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GDLN+A ID R +AG +E R+ F S L+ESG F D FR +PE
Sbjct: 139 VIFCGDLNVAHQEIDLKNPQANRRNAG---FTDEERLKF-SELLESG--FIDTFRYLYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
++++Y+ W A N G RID+ C L K LQS T
Sbjct: 193 QKDSYSWWSYRFNARVRNAGWRIDY-FCMSERL--KDSLQSAEIYT 235
>gi|307721179|ref|YP_003892319.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
gi|306979272|gb|ADN09307.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
Length = 258
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 88/323 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I+++NVNG+R ++ K +D D I+C QE K +++++ +L +E FS
Sbjct: 5 IEIISWNVNGIRAVANK--EALKWIDERDTGILCLQEIKAQKEQIPDNL-----FEKEFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSG AT+ +KS ++ST ++T
Sbjct: 58 EVIINSGERKGYSGTATYSMLKSDYTST------------CNDIDTK------------- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
EGR + T +G +LFNVY P +D R+ +K++F+ +G+
Sbjct: 93 -------HEGRIIETHYGDIVLFNVYFPNG-QKDEERLAYKMKFYDDFLAYCEQLKDEGK 144
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I V GD+N A ID + + + F R W L + D FR H ++
Sbjct: 145 SIIVCGDVNTAHREIDLKNPKANSKTSGFLPIEREWIDKFL---NHGYIDTFRYVHGDKE 201
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
+AY+ W A N G RID+ + D ++DY
Sbjct: 202 DAYSWWSYRFNARVKNVGWRIDYFFISEDLAENLEDA--------------FILDY---- 243
Query: 288 PGNAPRWKGGMSTRLEGSDHAPV 310
+EGSDH P+
Sbjct: 244 --------------IEGSDHCPI 252
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 118/260 (45%), Gaps = 46/260 (17%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
I T+NV+GLR + + G L +L DI+C QETK +L ++ +GYE+ + C
Sbjct: 995 ITTWNVDGLRSWLKK-GCL-DILKYDKPDILCIQETKCAVYKLPEEVKTIEGYETLWCC- 1051
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
SDK GY+GV + K P + ++ G++ SK+
Sbjct: 1052 --SDKD--GYAGVGIMVKDK-PLN------------------------VIYGID--SKEH 1080
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQFKLQFFHVLQG----RRIFV 175
D+EGRC+ ++ F + NVY P A R+ + QF ++ + + +
Sbjct: 1081 ----DTEGRCITVEYETFFVVNVYVPHAGRNLVTLPKRLDWNEQFEKFIKNLDSQKPVII 1136
Query: 176 VGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYTCWP 234
GD+N+A ID + + F + R M G + D++R +PE+ +AYT W
Sbjct: 1137 CGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGYVDIYRHLYPEKEKAYTFWI 1196
Query: 235 SNTGAEQFNYGTRIDHILCA 254
A N G R+D+ L +
Sbjct: 1197 YMRNARPNNVGWRLDYFLVS 1216
>gi|169787224|gb|ACA80051.1| putative DNA lyase [Colletotrichum caudatum]
gi|399573804|gb|AFP49241.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 233
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L +Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 128/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELK--SDLVMADGY-E 56
+KI+++NVNGL+ + G S+++L D D++C QETK++ ++++ D ++ DGY
Sbjct: 233 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLL-DGYTN 291
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++C+ + + GYSG A RVK P++ + G G+
Sbjct: 292 SFWTCSVS----KLGYSGTAIISRVK----------PLSIKYGL-------------GIS 324
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HV 167
D D+EGR V + F L Y P + + R+ +++ + +
Sbjct: 325 DH--------DTEGRVVTVEFDDFYLLTAYVPNS-GDGLKRLTYRVTEWDPSLGNYMKEL 375
Query: 168 LQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + + GDLN A ID D D NE R F + + G F D FR +H
Sbjct: 376 EKSKPVILTGDLNCAHQEIDIHDPAGDRRSAGFTNEERESFGTNFLSKG--FVDTFRKQH 433
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
P AY+ W A + N G R+D+ L + + HD
Sbjct: 434 PNVV-AYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 472
>gi|423300230|ref|ZP_17278255.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
gi|408474039|gb|EKJ92561.1| exodeoxyribonuclease III (xth) [Bacteroides finegoldii CL09T03C10]
Length = 255
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ + L + DI+C QETKL+ + +++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V + R+
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEK 198
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 284
+E YT W + N G RID+ + + P + L+S + H + C ++++
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMASEPV---RRWLKSARILNEAVHSDHCPMVLEID 254
Query: 285 R 285
R
Sbjct: 255 R 255
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 56/271 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K+V++NVNGLR + + DADI C QETKL+ +++ +L +GYE +++
Sbjct: 3 KLVSWNVNGLRACIGK--GFWDFFKEVDADIFCVQETKLQEGQIELEL---EGYEHYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F ++K PV++ G G+E+
Sbjct: 58 AV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH--- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVL-----QGRRI 173
D+EGR + + + L NVY P + E R+++++++ F V Q + +
Sbjct: 87 -----DNEGRVITLEFEEYFLVNVYTPNSKRE-LERLEYRMKWEDDFRVYLKQLEQTKPV 140
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
+ GD+N+A ID + + F + R S L+E G F D FR+ +P++ AY
Sbjct: 141 IICGDMNVAHQEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDTFRTLYPDKTGAY 198
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
T W A + N G RID+ C L +
Sbjct: 199 TWWSYMFKAREKNVGWRIDY-FCISEALKDR 228
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 124/286 (43%), Gaps = 61/286 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR + + + +D+ + D++C QE K R +++K DL ++ ++
Sbjct: 1 MKLVSWNVNGLRAVLGK--GMADAVDALEPDVLCLQEIKARPEQVK-DLWISSWPHQLWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV RV+ +S + P
Sbjct: 58 PAE-----KAGYSGVLILSRVRPLSTSVGIGWP--------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
+ D EGR + F L N Y P + +E VR+ ++ Q+ + + +
Sbjct: 86 ----EHDREGRVCTMEFEGFYLVNCYTPNSQNE-LVRLPYREQWDAAFREYVAGLAETKP 140
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GDLN+A ID R AG F+ E R F ++L+E+G F D FR+ HPE
Sbjct: 141 VVFCGDLNVAHEEIDIARPKENRFSAG--FSDQE-RAGF-TLLLEAG--FTDTFRALHPE 194
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
Y+ W GA N G RID+ + P + D H VT
Sbjct: 195 EPGWYSWWSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIHPDVT 240
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 55/274 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + +ADI C QETK+ ++ +D DGY+SF++
Sbjct: 1 MKLISWNVNGLRACMQK--GFADFFNREEADIFCVQETKMHPEQ--ADFAF-DGYQSFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F RV ++ P E +G
Sbjct: 56 SAE-----KKGYSGTAVFTRVPPLSVRYDMGEP-----------EHTG------------ 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
EGR + + F L NVY P + D VR+ +++++ + +
Sbjct: 88 --------EGRVITVESEAFFLVNVYTPNS-QRDLVRLDYRMRWEDAFRAYLLTLNRDKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRSKHPERREA 229
+ V GD+N+A ID + + F R L+E+G F D FR+ +PE+++A
Sbjct: 139 VVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQKMTDLLEAG--FIDTFRALYPEQKDA 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
YT W A + N G RID+ L + Q D
Sbjct: 197 YTWWSYMRKARERNAGWRIDYFLVSDRLRGQVED 230
>gi|372487554|ref|YP_005027119.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
gi|359354107|gb|AEV25278.1| exodeoxyribonuclease III [Dechlorosoma suillum PS]
Length = 261
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 115/269 (42%), Gaps = 54/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R ++ L + L + DADI+C QE K + +L ++ G+ +F
Sbjct: 2 LRIISLNLNGIRSAFNK--GLAEWLAAQDADIVCLQELKAQAPDLTPEMSNPPGFTGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +CR + ++ EG+
Sbjct: 60 YAE-----KKGYSGVGLWCRQQP-------------------------DRVSEGIGHAG- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVL-----QGRR 172
D+EGR + D G+ + +VY P S + QF +F VL +GR
Sbjct: 89 -----FDAEGRYIRADFGNLSVISVYVPSGSSSPERQEAKFQFMDEFAPVLAALQAEGRE 143
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 227
+ + GD NIA ID + + + F R W + G + DV+R HPE
Sbjct: 144 VVLCGDWNIAHREIDLKNWKGNLKNSGFLPEERAWIGDLFEHKG--WVDVYRRLHPEATG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRID-HILCAG 255
EAYT W + A N G RID HI G
Sbjct: 202 EAYTWWSNRGQARAKNVGWRIDYHIATPG 230
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 124/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + R++ + DAD C QETK+ QE + DL +GY S+++
Sbjct: 3 MKLISWNVNGLRACCDK--GFREIFNELDADFFCLQETKM--QEGQLDLAF-EGYTSYWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R P S T GL G+++
Sbjct: 58 YAE-----KKGYSGTAIFTR-HQPLSVT------------YGL----------GIDEH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + +F L VY P R D T F+ + + + +
Sbjct: 88 ------DHEGRVITLEMENFYLVTVYTPNSQDGLKRLDYRMTWEEDFRKYLLQLDRQKPV 141
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F+ +L+++G F D FR +P
Sbjct: 142 LVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG--FIDTFRHFYPT 194
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+ Y+ W A + N G RID+ L + + D + H
Sbjct: 195 QENIYSWWSYRFKAREKNAGWRIDYFLASSRIADKLQDAKIH 236
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 55/265 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K+V++NVNGLR + + DADI C QETKL+ +L+ ++ +GYE +++
Sbjct: 3 KLVSWNVNGLRSCIGK--GFWDFFKEVDADIFCVQETKLQEGQLELEI---EGYEHYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F ++K PV++ G G+E+
Sbjct: 58 AV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH--- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRRI 173
D+EGR + + F L NVY P + E R+++++++ + Q + +
Sbjct: 87 -----DNEGRVITLEFEEFFLVNVYTPNSKRE-LERLEYRMKWEDDFREYLKQLEQTKPV 140
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
+ GD+N+A ID + + F + R S L+E G F D FR +P++ AY
Sbjct: 141 IICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQLLEHG--FVDTFRMLYPDKTGAY 198
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAG 255
T W + + N G RID+ +G
Sbjct: 199 TWWSYMFKSREKNAGWRIDYFCVSG 223
>gi|146415196|ref|XP_001483568.1| hypothetical protein PGUG_04297 [Meyerozyma guilliermondii ATCC
6260]
Length = 543
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 134/334 (40%), Gaps = 83/334 (24%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLV-MAD 53
+++VT+NVNG++ + LL ADI+ QE KL Q L S +
Sbjct: 21 LRLVTFNVNGVKTIFNYHPWNGHKQCFDTLLQYLKADIVSLQELKLTAQNLSSTKIGNTQ 80
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLLETSG 108
Y SF S +T + GYSGV F R+ P + + L AEEG TG L +
Sbjct: 81 KYRSFVSVPKT----KKGYSGVGLFVRI--PNENEDAVLKKNLSVAKAEEGLTGYLFSPD 134
Query: 109 SKIMEGLE------------DFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDT 155
K + E D + K+DSEGRC+ + I+F++Y P A+S T
Sbjct: 135 KKGLRYRELAVEECIGCYPTDIDDETCSKLDSEGRCISVQLASGLIIFSLYCP-ANSSGT 193
Query: 156 VRIQF-KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA-------------- 191
+ +L F VL +G + ++GD+N+A ID D
Sbjct: 194 EEGEIQRLLFLRVLLERCKRLEEKGNEVIIMGDINVALDLIDHADYMRESFKQGTLKHSL 253
Query: 192 -----GPDFAKNEFR--IWFR------------------SMLVESGGS--FFDVFRSKHP 224
G + K + F+ SMLV + +D R
Sbjct: 254 NSSGDGSELEKLNLAECLKFKDSTPARSLLNAYVHPSSESMLVANSSKQFLYDTTREVQK 313
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
R YT W + TGA Q N+G+RID IL + L
Sbjct: 314 RRLGMYTVWNTLTGARQSNFGSRIDLILTSSKAL 347
>gi|260642288|ref|ZP_05415267.2| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
gi|260622802|gb|EEX45673.1| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
Length = 255
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 133/301 (44%), Gaps = 63/301 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ + L + DI+C QETKL+ + +++ A GY+S+
Sbjct: 2 MKIITYNVNGLRAAVSK--GFPEWLAQENPDILCLQETKLQPDQYPAEVFEALGYKSYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V + R+
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRN-AKNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEK 198
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYK 284
+E YT W + N G RID+ + + P + L+S + H + C ++++
Sbjct: 199 QE-YTWWSYRFNSRAKNKGWRIDYCMTSEPV---RRWLKSARILNEAVHSDHCPMVLEID 254
Query: 285 R 285
R
Sbjct: 255 R 255
>gi|74316272|ref|YP_314012.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
gi|74055767|gb|AAZ96207.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
Length = 259
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 116/263 (44%), Gaps = 53/263 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ N+NG+R ++ L + AD++C QE K + +LK ++ DG F
Sbjct: 1 MRIISANLNGIRSAATK--GFFDWLPTQGADVVCVQELKAQATDLKPEVRQCDGLSGAFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R ++P +I+EGL
Sbjct: 59 CAE-----KKGYSGVGVYTR-QAP------------------------QRIVEGL----- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQ-----GRR 172
L + D+EGR + D+G + ++Y P S + + +F FF L+ GR
Sbjct: 84 -GLPEFDAEGRYIEADYGDLAVISLYQPSGSSSEERQQAKFRFLDAFFPHLEKLVKCGRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 227
I + GD NIA ID + + + F R W + E G + DV+RS +P
Sbjct: 143 IIICGDWNIAHQEIDLKNWKSNQKNSGFLPEERAWMTRLFDELG--WVDVYRSLYPAHTG 200
Query: 228 EAYTCWPSNTGAEQFNYGTRIDH 250
EAYT W + A N G RID+
Sbjct: 201 EAYTWWSNRGQAWAKNVGWRIDY 223
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 120/271 (44%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + +DSF DADI C QETKL+ +++ +L GYE
Sbjct: 1 MKLISWNVNGLRAAVT-----KGFIDSFNELDADIFCLQETKLQPHQIELEL---PGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F R+K P+A G G+E+
Sbjct: 53 FWNSAV-----KKGYSGTAVFTRIK----------PIAVTNGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + +F L Y P R D F+ + +
Sbjct: 85 H--------DQEGRVITAEFDNFYLVCCYTPNSQRELARLDYRMAWEDAFRAYLLELDKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + GDLN+A ID R +AG F+ E + L+ESG F D FR +
Sbjct: 137 KPVILCGDLNVAHNEIDLKNPKTNRKNAG--FSDEERAK--MTTLLESG--FTDTFRYLY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P+ + Y+ W A N G RID+ + +
Sbjct: 191 PDAVDEYSWWSYMGKARDRNVGWRIDYFITS 221
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 120/282 (42%), Gaps = 64/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + S DAD C QETK++ +L + DGYESF++
Sbjct: 1 MKFISWNVNGLRAVVGK--DFENIFKSLDADFFCLQETKMQAGQLD---LQFDGYESFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R K P+ G G++
Sbjct: 56 YA-----DKKGYSGTAIYTRHK----------PLNVTYGI-------------GID---- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
+ D EGR + + F L VY P + E R+ +++Q + H L R+
Sbjct: 84 ----QHDHEGRVITLEMPTFFLVTVYTPNSQDE-LRRLDYRMQWEDDFQAYLHDLDKRKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GD+N+A ID R +AG F E + M G F D FR K+PE
Sbjct: 139 VIVCGDMNVAHQEIDLKNPKTNRRNAG--FTDEE----RQKMTQLLGAGFTDTFRWKYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
Y+ W A + N G RID+ L + + D + H
Sbjct: 193 EI-TYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIH 233
>gi|380695720|ref|ZP_09860579.1| exodeoxyribonuclease III [Bacteroides faecis MAJ27]
Length = 254
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 133/300 (44%), Gaps = 61/300 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + D++C QETKL+ + +++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLVQENPDVLCLQETKLQPDQYPAEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V + R+
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV--TCHVNECDILIDYKR 285
E YT W + N G RID+ + + P + L+S + + H + C + ++ +R
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV---RPLLKSASILNGAVHSDHCPMALEIER 254
>gi|254564561|ref|XP_002489391.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|238029187|emb|CAY67107.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Komagataella pastoris GS115]
gi|328349821|emb|CCA36221.1| AP endonuclease 2 [Komagataella pastoris CBS 7435]
Length = 520
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 148/367 (40%), Gaps = 93/367 (25%)
Query: 1 MKIVTYNVNGLRQRVS-----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
++ VT+NVNG + + + S K+ ADII QE K+++ L +L Y
Sbjct: 16 VRFVTFNVNGTKTLCNYHPWNKMKSFDKIFGYLFADIITLQELKVQKDNLDHELNEIPNY 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA---AEEGFTGLLETSGSKI- 111
SF T R GYSGV F R+ + S ++ +A AEEG TG L++S S
Sbjct: 76 RSFV----TLATNRKGYSGVGVFVRIPADEESDQIKSCLAVVHAEEGITGYLKSSQSTTS 131
Query: 112 ------MEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF-KLQF 164
+ G D S+ +ID +GRCV+ + G+ ++ A+S T + +F ++ F
Sbjct: 132 YRDLNNIGGYPDISEVLANEIDFQGRCVVLELGNMMVIISVYCFANSMGTEQGEFHRVLF 191
Query: 165 FHVL---------QGRRIFVVGDLNIAPAAIDR-----------------CDAGPDF--- 195
+ G+ + ++GD+N++ ID + G F
Sbjct: 192 LRCILERAEKLQQMGKTVVIMGDINVSRDLIDNEVYLREGIADKSLIPPINNDGAHFEEA 251
Query: 196 ---AKNEFRIWF--RSML-------VESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFN 243
A +FR RS+L G D FR H +YT W + N
Sbjct: 252 NKTAVLQFRTASQPRSLLNSFIKDKYNDSGILHDTFREHHGRVMRSYTVWNTLKNTRPLN 311
Query: 244 YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303
G+RID ILC+ L++ +C+IL W L
Sbjct: 312 IGSRIDLILCSTALLNK-------------FKKCEIL----PW---------------LM 339
Query: 304 GSDHAPV 310
GSDH PV
Sbjct: 340 GSDHCPV 346
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNP----EANCGYFKW 613
PLC H EPCV RV KK GR+F+ C+RA P N E C F+W
Sbjct: 469 PLC-DHNEPCVLRVCKKESKNKGRKFWCCSRAPRPDENSNKLDEYRCNTFQW 519
>gi|30250127|ref|NP_842197.1| exodeoxyribonuclease III:exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
gi|30139234|emb|CAD86104.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
Length = 257
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 112/262 (42%), Gaps = 53/262 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T NVNGLR + L L +AD+IC QE K ++ ++ + DGY +F
Sbjct: 1 MRIITLNVNGLRSAAGK--GLFDWLPRQEADVICVQELKAQQGDINGVMRAPDGYSGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGV + R S +I+EG
Sbjct: 59 CAE-----KKGYSGVGLYTRY-------------------------SPDQIIEG------ 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVLQ-----GRR 172
+ +ID EGR + D G+ + ++Y P S + + F F +LQ GR
Sbjct: 83 TGIPEIDMEGRFLRVDFGNLTVISIYLPSGSSGEHRQAAKFFFMEHFLPLLQSLAECGRE 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD NIA AID + + + F R W ++ E DVFR +PE +
Sbjct: 143 VLLCGDWNIAHKAIDLKNWRSNQKNSGFLPEERAWLSTVFDEL--KLVDVFRKINPE-PD 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDH 250
YT W + A N G RID+
Sbjct: 200 QYTWWSNRGQAWAKNVGWRIDY 221
>gi|365762129|gb|EHN03737.1| Apn2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 414
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 109/404 (26%), Positives = 157/404 (38%), Gaps = 110/404 (27%)
Query: 2 KIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+ +++NVNG+R Q SQ SL+ + D F ADII FQE K + + S DG+
Sbjct: 18 RFLSFNVNGIRTFFHYQPFSQMKQSLKSVFDFFKADIITFQELKTEKLSI-SKWGKVDGF 76
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---- 110
SF S + R GYSGV + R+ L V AEEG TG L K
Sbjct: 77 YSFISIPQI----RKGYSGVGCWIRILDKDHPLYHGLQVVKAEEGITGYLTIKNGKQSVV 132
Query: 111 -----IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVR 157
+G+ D ++ L++DSEGRCV+ + ++ +VY P +
Sbjct: 133 SYRDDANQGIGGYDSLDPDLNEKNALELDSEGRCVMVELACGIVIVSVYCPANSNSSEKG 192
Query: 158 IQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDAGPDFA------------ 196
F+++F VL G++I ++GD+N+ ID D +F+
Sbjct: 193 ELFRIKFLKVLLRRVKNLDKMGKKIVLMGDVNVCRDLIDSADMLEEFSIPIIDPMGGKDL 252
Query: 197 KNEFR--------------------IWFRSMLVESG--GSFFDVFRSKHPERR-EAYTCW 233
+ +R I F S+L ++ G D R R YT W
Sbjct: 253 EQRYRDEAIQFIVNPETPHRRIFNQILFDSLLPDASKEGILIDTTRLIQTRSRLRMYTVW 312
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 293
S + NYG+RID IL S C + DIL D
Sbjct: 313 NSLKNSRPSNYGSRIDFILA------------SSKLEQC-IKAGDILPD----------- 348
Query: 294 WKGGMSTRLEGSDHAPVYMCLGEVPEIPQHST-----PSLASRY 332
+ GSDH PVY L + + ST P +RY
Sbjct: 349 --------ILGSDHCPVYSDLDLRDQEVKSSTTEISIPKFEARY 384
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 117/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ DL GY
Sbjct: 1 MKLVSWNVNGLRACVR-----KGFLDYFQEVDADIFCVQETKLQSGQIELDL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S + GL D
Sbjct: 53 YWNYAE-----KKGYSGTAVFTK-EEPLS------------------------VHYGLGD 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
+ EGR + + F L NVY P + D R+ ++L++ + +
Sbjct: 83 VENE------PEGRIITLEFPKFYLVNVYTPNS-QRDLARLPYRLEWEDRIRSYLIDLDK 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERRE 228
+ + + GDLN+A ID + + + F R+ + E F D FR +PE+
Sbjct: 136 DKPVLLCGDLNVAHQEIDLRNPKSNQGNSGFTKEERAKMSELLNAGFIDTFRYFYPEKEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W A + N G RID+ + +
Sbjct: 196 AYTWWSYINKARERNIGWRIDYFIAS 221
>gi|442751465|gb|JAA67892.1| Putative ap endonuclease [Ixodes ricinus]
Length = 147
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 19/141 (13%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR S ++ LL DADIICFQETK R L+ + DGY +FFS
Sbjct: 1 MKLISWNINGLR---SFKAGVKGLLAELDADIICFQETKATRSVLEETSAIVDGYSAFFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGL---LETSGSKIMEG-LE 116
R ++GYSGVATFC+ + P AAEEG T L LE S G
Sbjct: 58 FPRY----QSGYSGVATFCK--------DAYRPFAAEEGLTELWTSLECPDSLGCYGDTS 105
Query: 117 DFSKDELLKIDSEGRCVITDH 137
DF + +D EGR V+T H
Sbjct: 106 DFDSKHISSVDGEGRTVLTLH 126
>gi|410100459|ref|ZP_11295420.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
gi|409215701|gb|EKN08697.1| exodeoxyribonuclease III (xth) [Parabacteroides goldsteinii
CL02T12C30]
Length = 253
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 112/270 (41%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + + L D++C QETKL+ + ++ GY+ +
Sbjct: 1 MKIITYNVNGLRAAVGK--GFPEWLKQEQPDVLCLQETKLQPDQFPAEAFADSGYKPYLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R E +I G+E
Sbjct: 59 SAQ-----KKGYSGVAILTR-----------------------QEPDHVEIGMGIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG---------R 171
K D+EGR + D+G + +VY P S D R FK+++ Q +
Sbjct: 87 ----KYDNEGRFIRADYGDLSIVSVYHPSGTSGDE-RQAFKMEWLEDFQKYVVELQKTRK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGFIDTFRHLNPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
+ YT W A + N G RID+ + + P
Sbjct: 199 Q-YTWWSYRFNARKNNKGWRIDYCMVSEPV 227
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 118/267 (44%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNGLR V+ + LD F DAD C QETKL+ +++ DL GY
Sbjct: 1 MKFISWNVNGLRAIVN-----KNFLDVFHELDADFFCLQETKLQAGQIELDL---PGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ R GYSG A F + E AL V+ G D
Sbjct: 53 YWNYAE-----RKGYSGTAIFAK--------EPALNVSYGMGI----------------D 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR-- 172
D EGR + ++ F L Y P + +E R+Q++ F+H L+ +
Sbjct: 84 LH-------DQEGRLITLEYPEFFLVTCYTPNSQNELKRLDYRLQWEEAFYHYLEELKKQ 136
Query: 173 --IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERR 227
+ V GDLN+A ID + + F + R S L+ +G F D FR +PE+
Sbjct: 137 KPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTMEERTAFSHLLANG--FIDTFRYFYPEQT 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W A + N G RID+ L +
Sbjct: 195 GIYSWWSYRFNARKNNAGWRIDYFLTS 221
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 129/296 (43%), Gaps = 62/296 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L DADI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETDADIFCVQETKLQEGQ-----ILMENMEEYAQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F ++K P S + GLE+
Sbjct: 54 YWNYAEK--KGYSGTAIFTKIK-PLS------------------------VHYGLEENE- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
+ EGR + + F L NVY P D R+ ++L+ + L ++
Sbjct: 86 ------EPEGRTITLEFEKFYLVNVYTPNT-KRDLSRLPYRLEWEDRFRSYLQQLDAQKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ + GDLN+A ID +A ++ F R S L+ +G F D FR +P+R +
Sbjct: 139 VIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAG--FIDTFRYFYPDRTDV 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 282
Y+ W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 197 YSWWSYMPKVRERNIGWRIDYFLVS----ERLRPLLMDASIDCHITGSDHCPVILD 248
>gi|154490204|ref|ZP_02030465.1| hypothetical protein PARMER_00436 [Parabacteroides merdae ATCC
43184]
gi|423721864|ref|ZP_17696040.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL09T00C40]
gi|154089096|gb|EDN88140.1| exodeoxyribonuclease III [Parabacteroides merdae ATCC 43184]
gi|409242877|gb|EKN35636.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL09T00C40]
Length = 253
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPEQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
K D+EGR + D G + +VY P S D R FK+++ Q
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVVELQKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR + + DAD C QETK++ +L + DGY+S+++
Sbjct: 2 LKLISWNVNGLRACYDK--GFTDIFRQLDADFFCLQETKMQAGQLD---LQFDGYQSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R++ P++ G M+ E
Sbjct: 57 YAE-----KKGYSGTAVFTRLQ----------PISVSYG------------MDRTEH--- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQGRR---- 172
D EGR + + F L NVY P + E R+++++ F H L+ +
Sbjct: 87 ------DREGRIITLEMEDFFLVNVYTPNS-QEGLKRLEYRMTWEDDFLHFLKQLKTQKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG +E R F +L F D FR +P
Sbjct: 140 VIVCGDLNVAHQEIDLKNPKTNRKNAG---FTDEERYKFTQLL---SAGFTDTFRYFYPN 193
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+++ Y+ W A + N G RID+ L A L++K
Sbjct: 194 QKDIYSWWSYRFKAREKNAGWRIDYFL-ASASLNEK 228
>gi|160889848|ref|ZP_02070851.1| hypothetical protein BACUNI_02279 [Bacteroides uniformis ATCC 8492]
gi|270294104|ref|ZP_06200306.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|317478856|ref|ZP_07938007.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
gi|156860840|gb|EDO54271.1| exodeoxyribonuclease III [Bacteroides uniformis ATCC 8492]
gi|270275571|gb|EFA21431.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|316905032|gb|EFV26835.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 129/295 (43%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +VL+ R
Sbjct: 89 ------DNEGRFIRADFGDVSVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVLELERTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI AID D + + F R W L F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAIDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRWLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + + P + + V H + C +L++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPVRPMLKEARILGDVV-HSDHCPMLLE 251
>gi|423347898|ref|ZP_17325583.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
gi|409215384|gb|EKN08385.1| exodeoxyribonuclease III (xth) [Parabacteroides merdae CL03T12C32]
Length = 253
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 123/295 (41%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ ++ ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPEQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
K D+EGR + D G + +VY P S D R FK+++ Q
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVMELQKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 123/270 (45%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVNG+R +++ G+L++ + + DI+C QETK ++ +++ + ++ YE FF+
Sbjct: 1 MKLATWNVNGIRSVLNK-GALQEYVLESNPDILCLQETKAQQDQVELGMEFSE-YEVFFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ E G G+E+
Sbjct: 59 SAV-----KKGYSGTAIFTKEK----------PLSVEYGI-------------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D EGR + ++ F L VY P A D R++++ L F L+ +
Sbjct: 89 ------DQEGRVITAEYEKFYLVTVYTPNA-KRDLSRLEYRQVWEDDFLAFIKKLEETKP 141
Query: 173 IFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GDLN+A ID + + F K E R F ++ D FR +P+
Sbjct: 142 VIFCGDLNVAHKEIDLANPKTNTMNAGFTKEE-RAKFDQVV---NNDLVDAFRYLYPDTL 197
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
AY+ W GA N G RID+ + + P
Sbjct: 198 GAYSWWSYMGGARARNVGWRIDYFVISQPL 227
>gi|169787326|gb|ACA80102.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 54/292 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 454 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 511
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 512 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 540
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D GR + ++ F L NVY P + V ++ ++++ + Q +
Sbjct: 541 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDALKP 593
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYT 231
+ + GD+N++ ID + + F R + E G F D FR +P+R+ AYT
Sbjct: 594 VVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYT 653
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 281
W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 654 FWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 702
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 111/268 (41%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+ V++NVNGLR + + + + DAD C QETK++ + DL GYE +F
Sbjct: 1 MRFVSWNVNGLRAALKK--GFMESFKALDADAFCLQETKMQEGQAILDL---PGYEQYFY 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F RV+ P S VA + A E
Sbjct: 56 SAE-----KKGYSGTAIFTRVQ-PLS---VAYGIGAPEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + L VY P R D F+ ++ + +
Sbjct: 86 ------DDEGRVITMEFEELYLVTVYTPNAKRALERLDYRMAWEDAFRAFLLNLRAKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG +E R F +L F D FR+ +P+R
Sbjct: 140 VVCGDLNVAHKEIDLKNPKSNRHNAG---FTDEERGKFGELL---AAGFVDTFRALYPDR 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
R AYT W A + N G RID+ L +
Sbjct: 194 RGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|169787256|gb|ACA80067.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787264|gb|ACA80071.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787302|gb|ACA80090.1| putative DNA lyase [Colletotrichum nicholsonii]
gi|169787310|gb|ACA80094.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|190347850|gb|EDK40199.2| hypothetical protein PGUG_04297 [Meyerozyma guilliermondii ATCC
6260]
Length = 543
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 140/334 (41%), Gaps = 83/334 (24%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDS----FDADIICFQETKLRRQELKSDLV-MAD 53
+++VT+NVNG++ + + ++ D+ ADI+ QE KL Q L S +
Sbjct: 21 LRLVTFNVNGVKTIFNYHPWNGHKQCFDTSLQYLKADIVSLQELKLTAQNLSSTKIGNTQ 80
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLL---E 105
Y SF S +T + GYSGV F R+ P + + L AEEG TG L +
Sbjct: 81 KYRSFVSVPKT----KKGYSGVGLFVRI--PNENEDAVLKKNLSVAKAEEGLTGYLFSPD 134
Query: 106 TSGSKIME-GLE--------DFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDT 155
GS+ E +E D + K+DSEGRC+ + I+F++Y P A+S T
Sbjct: 135 KKGSRYRELAVEECIGCYPTDIDDETCSKLDSEGRCISVQLASGLIIFSLYCP-ANSSGT 193
Query: 156 VRIQF-KLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA-------------- 191
+ +L F VL +G + ++GD+N+A ID D
Sbjct: 194 EEGEIQRLLFLRVLLERCKRLEEKGNEVIIMGDINVALDLIDHADYMRESFKQGTLKHSL 253
Query: 192 -----GPDFAKNEFR--IWFR------------------SMLVESGGS--FFDVFRSKHP 224
G + K + F+ SMLV + +D R
Sbjct: 254 NSSGDGSELEKLNLAECLKFKDSTPARSLLNAYVHPSSESMLVANSSKQFLYDTTREVQK 313
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
R YT W + TGA Q N+G+RID IL + L
Sbjct: 314 RRLGMYTVWNTLTGARQSNFGSRIDLILTSSKAL 347
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 54/292 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 485 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 513
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D GR + ++ F L NVY P + V ++ ++++ + Q +
Sbjct: 514 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDALKP 566
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYT 231
+ + GD+N++ ID + + F R + E G F D FR +P+R+ AYT
Sbjct: 567 VVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYT 626
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 281
W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 627 FWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 118/278 (42%), Gaps = 68/278 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QE+K++ +LK +L +GY
Sbjct: 1 MKFISWNVNGIRACVQ-----KGFLDFFKEADADIFCIQESKMQEGQLKLEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ R GYSG A F + + P S VA + EE
Sbjct: 53 FWNYAE-----RKGYSGTAIFTK-QEPLS---VAYGIGMEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQ----G 170
D EGR + + F VY P + +E R+Q++ +F L+
Sbjct: 86 ---------DKEGRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLKKLEAK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + GDLN+A ID R +AG +E R F +L F D FR +
Sbjct: 137 KPVIFCGDLNVAHREIDLKNPKTNRKNAG---FTDEERGKFTELL---SAGFIDTFRYFY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
PE+ Y+ W A N G RID+ C CL +
Sbjct: 191 PEQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 127/292 (43%), Gaps = 54/292 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 427 LKICSWNVAGLRAWLKKDG--LQLIDLEEPDIFCLQETKCANDQLPEEVTRLPGYHPYWL 484
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 485 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 513
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D GR + ++ F L NVY P + V ++ ++++ + Q +
Sbjct: 514 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDALKP 566
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYT 231
+ + GD+N++ ID + + F R + E G F D FR +P+R+ AYT
Sbjct: 567 VVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYT 626
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQ--KHDLQSHNFVTCHVNECDILI 281
W A N G R+D+ L + + + +H+++S + H C I I
Sbjct: 627 FWTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCLGSDH---CPITI 675
>gi|169787200|gb|ACA80039.1| putative DNA lyase [Colletotrichum nicholsonii]
Length = 233
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCSPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ ID C+
Sbjct: 166 LNVIRDEIDTCNV 178
>gi|407893404|ref|ZP_11152434.1| exodeoxyribonuclease III [Diplorickettsia massiliensis 20B]
Length = 261
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 110/265 (41%), Gaps = 59/265 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+ I T+NVN LR R+ + K L + D++ QETK+ Q+ + GYE FS
Sbjct: 5 VTIATWNVNSLRVRLQH---VLKWLVTHQPDVLALQETKVTDQDFPIAALRDAGYEVCFS 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R P E + P GFT
Sbjct: 62 -------GQKSYNGVAILSRF--PIQQVETSFP-----GFT------------------- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG---------R 171
D++ R +I G + N+Y P S D+ + ++KL + LQ R
Sbjct: 89 ------DTQRRLLIATLGPLRVLNLYVPNGASLDSEKYEYKLAWLAQLQDYLAKELATQR 142
Query: 172 RIFVVGDLNIAPAAIDRCD----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ VVGD NIAP D D AG R F+ L++ G D FR HPE
Sbjct: 143 SVIVVGDFNIAPEDRDVYDPSRWAGHVLVSQPERQAFQQ-LIDLG--LVDTFRLFHPEAN 199
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHIL 252
Y+ W A + N+G RIDHIL
Sbjct: 200 H-YSWWDYRAAAFRRNHGLRIDHIL 223
>gi|392966891|ref|ZP_10332310.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
gi|387845955|emb|CCH54356.1| exodeoxyribonuclease III Xth [Fibrisoma limi BUZ 3]
Length = 258
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 107/265 (40%), Gaps = 58/265 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++++YN+NG+R + L L + DI+CFQE K + + + GY +
Sbjct: 1 MQLISYNINGIRAALRN--GLADWLTQHNFDILCFQEVKATADVVDLSIFESLGYRYHWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF R+ +P
Sbjct: 59 AAE-----KKGYSGVATFSRIAPDNVILGCGIPA-------------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR----- 172
D EGR + TD G L N Y P + + V+++F F++ +Q R
Sbjct: 88 -----YDCEGRILRTDFGDLTLLNCYFPSGTTGEVRQGVKMEFLDDFYNYVQRLRQERPK 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ VVGD NIA AID D P KN E R W G D FR KHP+
Sbjct: 143 LIVVGDYNIAHNAIDIHD--PIRNKNTTGFLPEERAWMNKWF---GSGMTDAFRYKHPD- 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHI 251
AY+ W GA N G RID++
Sbjct: 197 EVAYSWWSYRAGARTNNKGWRIDYV 221
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 69/284 (24%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR V + LD F DADI C QETKL+ ++ DL DG+ S+
Sbjct: 3 KLISWNVNGLRACVK-----KGFLDFFKESDADIFCIQETKLQEGQIDLDL---DGFNSY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + GYSG A F + + P S V + + EE
Sbjct: 55 WNYAE-----KKGYSGTAVFTK-EEPLS---VKIGIGIEEH------------------- 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGR 171
D+EGR + + F L NVY P + + R+ +++ Q+ L+ +
Sbjct: 87 --------DNEGRVLTLEFNDFYLVNVYTPNS-KQGLERLDYRMVWEDVFRQYLKELEKK 137
Query: 172 R-IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + GDLN+A ID R +AG + E +I + L++SG F D +R +
Sbjct: 138 KPVILCGDLNVAHKEIDLKNPKVNRKNAGFTDEERE-KI---TQLLDSG--FIDTYRFFY 191
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
P++ AY+ W A N G RID+ L + + D + H
Sbjct: 192 PDKEGAYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIH 235
>gi|298385343|ref|ZP_06994901.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
gi|298261484|gb|EFI04350.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
Length = 254
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 119/270 (44%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + +++ A GY+++
Sbjct: 2 MKIITYNVNGLRAAVSK--GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLY 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 60 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V + R+
Sbjct: 90 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 142
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 143 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 199
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 200 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV 228
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 66/277 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++V++NVNGLR V + +++ DADI C QETKL QE + DL + D Y+ +
Sbjct: 2 IQLVSWNVNGLRACVKK--GFLDVMEQLDADIFCIQETKL--QEGQIDLELPDYYQYW-- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F ++K P++ + G G+++F
Sbjct: 56 ----NYAEKKGYSGTAVFTKIK----------PLSVKNGI-------------GVDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + + + L Y P + SE R+ +++ + + + +
Sbjct: 87 ------DHEGRVITLEFDDYFLVTCYTPNSQSE-LARLSYRMDWEENFREYLLKLEEDKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D + +F + L+E+G F D FR +P
Sbjct: 140 VILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKF-----TKLLEAG--FIDTFRHFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ EAY+ W A + N G RID+ C L ++
Sbjct: 193 DVTEAYSWWSYRFRAREKNAGWRIDY-FCVSEGLEER 228
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 129/282 (45%), Gaps = 65/282 (23%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K +++NVNGLR + + + + DS AD C QETKL+ +++ DL GY+ +++
Sbjct: 4 KFISWNVNGLRAVMGK--NFMEAFDSLGADFFCLQETKLQAGQIEMDL---PGYKEYWNY 58
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ + GYSG A F + + P++ G G+E
Sbjct: 59 AQ-----KKGYSGTAIFTKHE----------PLSVSYGI-------------GIE----- 85
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR-I 173
+ D+EGR + ++ F L VY P + +E R+ +++ F L+ ++ +
Sbjct: 86 ---QHDTEGRVITLEYADFFLVTVYTPNSQNE-LKRLDYRMAWEDDFRNFLVSLKAKKPV 141
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPE 225
V GD+N+A ID R +AG F E R+ + E S F D FR+ +PE
Sbjct: 142 IVCGDMNVAHEEIDIKNPSANRRNAG--FTDEE-----RAKMTELLASGFIDTFRTLNPE 194
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
++AY+ W A + N G RID+ L + + D + H
Sbjct: 195 LKDAYSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIH 236
>gi|302761410|ref|XP_002964127.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
gi|300167856|gb|EFJ34460.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii]
Length = 388
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
Query: 235 SNTGAEQFNYGTRIDHILCAGPCLHQ------KHDLQS-HNFVTCHVNECDILIDYKRWK 287
S +GAE+FNYG+RIDH+ AGPC HD S F C + CDIL+ +KR K
Sbjct: 101 SASGAEEFNYGSRIDHVRIAGPCAGHCQCPDGSHDNSSCDGFAECGTDMCDILLKFKRAK 160
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTP-SLASRYLPIIRGVQQTLVSV 346
PRW GG S +L+GS HAPV + L +P + H+ P L + + + + ++
Sbjct: 161 LDTLPRWSGGRSLKLDGSVHAPVILQLKHLPSMKLHNWPLDLCLSFAVVSKVLLISIFRK 220
Query: 347 LMKREVAKQGKSCKFSGSLPAESNSTG 373
L +R A + S PA + TG
Sbjct: 221 LNERATANTEPDTSRNVSKPAFTQETG 247
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 555 RRIQQLMETS---IPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAE 598
R QQ +E S +PLCKGH EPCV R VKK GP GR F+VC RA+
Sbjct: 325 RSSQQSLEKSAADLPLCKGHSEPCVVRTVKKAGPKLGRGFYVCDRAK 371
>gi|406893678|gb|EKD38677.1| hypothetical protein ACD_75C00647G0002 [uncultured bacterium]
Length = 500
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 114/267 (42%), Gaps = 55/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R V++ G L +FDAD++ QETK++ +L +L GY S++
Sbjct: 228 MKCISWNVNGIRA-VAKKG-FADQLRTFDADVVALQETKIQEDQLTDELKNIPGYTSYWH 285
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C R GYSGVA + R+ PVA G G +F
Sbjct: 286 CAE-----RKGYSGVAFYTRIP----------PVAVRYGL-------------GDPEF-- 315
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + + L N+Y P + +E VR+ KL+F L G +
Sbjct: 316 ------DCEGRVLTLEFADCYLINIYFPNS-AEKLVRLAHKLRFNDRLLGYARELEQKKP 368
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD N+A ID + + F R W S + F D FR E +
Sbjct: 369 VILCGDFNVAHKEIDLKNPKTNVKNAGFTPEERAWMDSFV---AAGFVDTFRL-FCEDPD 424
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAG 255
YT W A N G RID+ +G
Sbjct: 425 QYTWWSYRFNARAKNVGWRIDYFCVSG 451
>gi|398347543|ref|ZP_10532246.1| exodeoxyribonuclease III [Leptospira broomii str. 5399]
Length = 254
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 123/266 (46%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++ N NG+R ++ L LL S D +CFQETK + +L +++ GY+++F
Sbjct: 1 MKLICLNCNGIRSAWTK--GLGDLLSSERPDFVCFQETKAQSDQLSAEIWEKLGYKAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + K P T G+ G+E+F
Sbjct: 59 SAE-----KKGYSGVSLWAK-KEPKKIT------------YGI----------GVEEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR----- 172
D EGR V+ D+G F ++ VY P + DT +++F +F + + R
Sbjct: 89 ------DREGRSVLADYGDFAIWTVYFPSGTTGDTRQAAKMRFLDEFLKLSKKIRKKHPN 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD+NIA D D + AKN E R W L ++G + D FR +PE++
Sbjct: 143 LILCGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KTG--WIDSFRELYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
E Y+ W GA N G RID+
Sbjct: 199 E-YSWWTFRAGARGNNKGWRIDYFFV 223
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 122/269 (45%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 57 ------AVKKGYSGTAIFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVKKLDETKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 193 LEDAYSWWSYRMNARARNIGWRIDYFVVS 221
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ L + DI C QETKL+ + ++ + E +
Sbjct: 1 MKLISWNVNGLRACVTK--GFYTYLKETNPDIFCVQETKLQEGQ-----ILMENMEEYTQ 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++K GYSG A F + K P++ G LE +G
Sbjct: 54 YWNYAEK--KGYSGTAIFTKFK----------PLSVHYG----LEENG------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQ----GRRI 173
+ EGR + + F L NVY P R S R++++ +F + LQ + +
Sbjct: 86 ------EPEGRTITLEFERFYLVNVYTPNTKRDLSRLPYRLEWEDRFRNYLQQLDASKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYTC 232
V GDLN+A ID +A ++ F R + + G F D FR +P+R + Y+
Sbjct: 140 IVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSQLLGAGFIDTFRHFYPDRTDVYSW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHV---NECDILID 282
W + N G RID+ L + + L + CH+ + C +++D
Sbjct: 200 WSYMPKVRERNIGWRIDYFLVSD----RLRPLLIDASIDCHITGSDHCPVILD 248
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 116/266 (43%), Gaps = 54/266 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+++NVNG+R S+ + L DAD I QETK + ++ L DGY + +
Sbjct: 1 MKIISWNVNGVRAVQSK--GFAETLALLDADCILLQETKAQADQIDKALEGIDGYRVYSN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C R GYSGV R K P L+ S
Sbjct: 59 CAE-----RKGYSGVTILSR-KEP------------------------------LQVISD 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
+++ D EGR ++ + +F L NVY P R D T I+F L + LQ ++
Sbjct: 83 IGIVEHDREGRVIVAEFENFFLLNVYVPNSGEALARLDYRQTWDIEF-LAYCRQLQKKKP 141
Query: 174 FVV-GDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ GD N+A ID P++ K+ + I S +++G D FR HP+
Sbjct: 142 LIACGDFNVAHQEIDIARPKPNYNKSAGYTQVEIDGFSRFLDAG--LVDTFRHFHPD-TV 198
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G RID++L +
Sbjct: 199 AYSWWSFRGGARARNVGWRIDYVLTS 224
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 124/268 (46%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F +AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVNADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + G++
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLS------------------------VSYGVDK 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
S+D EGR + + + NVY P + D R++ +LQ + + L
Sbjct: 83 ESED-------EGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLNKLNS 134
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
R+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQ 192
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
EAYT W + N G RID+ + +
Sbjct: 193 EEAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|323306058|gb|EGA59792.1| Apn2p [Saccharomyces cerevisiae FostersB]
Length = 404
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 152/409 (37%), Gaps = 106/409 (25%)
Query: 20 SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79
SLR + D F ADII FQE K + + S DG+ SF S +T R GYSGV +
Sbjct: 4 SLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDGFYSFISIPQT----RKGYSGVGCWI 58
Query: 80 RVKSPFSSTEVALPVA-AEEGFTGLLETSGSK---------IMEGL-------EDFSKDE 122
R+ AL V AEEG TG L K + +G+ D +
Sbjct: 59 RIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSAISYRNDVNQGIGGYDSLDPDLDEKS 118
Query: 123 LLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRR 172
L++DSEGRCV+ + ++ +VY P + F+++F VL G++
Sbjct: 119 ALELDSEGRCVMVELACGIVIISVYCPANSNSSEEGELFRIRFLKVLLRRVRNLDKIGKK 178
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFA---------------------------KNEFRIWFR 205
I ++GD+N+ ID D F+ R F
Sbjct: 179 IVLMGDVNVCRDLIDSADTLEQFSIPITDPMGGTKLEAQYRDKAIQFIINPDTPHRRIFN 238
Query: 206 SMLVES-------GGSFFDVFRSKHPERR-EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
+L +S G D R R + YT W NYG+RID IL
Sbjct: 239 QILADSLLPDASKRGILIDTTRLIQTRNRLKMYTVWNMLKNLRPSNYGSRIDFILV---- 294
Query: 258 LHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
S C + DIL D + GSDH PVY L V
Sbjct: 295 --------SLKLERC-IKTADILPD-------------------ILGSDHCPVYSDLDIV 326
Query: 318 -----PEIPQHSTPSLASRYLPIIRGVQQTLVSVLMKREVAKQGKSCKF 361
P Q + P +RY +R ++ + K++ K+ K+
Sbjct: 327 DDRIEPGTTQVAIPKFEARYKYNLR--NHDVLEMFAKKDTNKESNKQKY 373
>gi|408671145|ref|YP_006871216.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
gi|407240967|gb|AFT83850.1| exodeoxyribonuclease III [Borrelia garinii NMJW1]
Length = 255
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 RSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + +F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYIENLIDSLVNGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------EKVMGSDHCPVFLELADV 253
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 136/325 (41%), Gaps = 88/325 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ T+NVNG+R +++ G+L++ + DI+C QETK + +++ + A GY ++++
Sbjct: 1 MKLTTWNVNGIRSVLNK-GALQEYVLEAQPDILCLQETKAQPEQVDLGMEFA-GYHAYWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+E+
Sbjct: 59 SAV-----KKGYSGTAIFTKEE----------PISVQYGL-------------GIEEH-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D EGR + ++ + L VY P A D R+ ++ L F L+ +
Sbjct: 89 ------DQEGRVITAEYADYYLVTVYTPNA-KRDLTRLSYRQVWEDDFLAFIKKLEETKP 141
Query: 173 IFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GDLN+A ID + + F K E + +VE+G D FR ++PE
Sbjct: 142 VIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREKF--DQIVENG--LVDAFRFRYPEAV 197
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
AYT W GA N G RID+ + + +T + E I D
Sbjct: 198 GAYTWWSYMGGARARNIGWRIDYFVVS-------------EVLTSRIQEVKIRAD----- 239
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYM 312
+ GSDH PV M
Sbjct: 240 --------------VTGSDHCPVEM 250
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 124/272 (45%), Gaps = 69/272 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ DL +GY
Sbjct: 1 MKLISWNVNGLRAAVQ-----KGFLDYFKNENADIFCIQETKLQEGQIELDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P EV+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KKP---IEVSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + ++ F + VY P + E+ R+ +++ + + +
Sbjct: 86 ---------DKEGRVITLEYEDFYMITVYTPNS-QEELARLDYRMSWEDEFRNYVMKLDK 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + + GDLN+A ID R +AG F+ E R F +L E+G F D FR
Sbjct: 136 LKPVIICGDLNVAHKEIDLKNPKSNRKNAG--FSDEE-RAKFTELL-ENG--FIDSFRHF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+PE AY+ W A + N G RID+ + +
Sbjct: 190 YPEVTGAYSWWSYRFNARKNNAGWRIDYFVVS 221
>gi|224532103|ref|ZP_03672735.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
gi|224511568|gb|EEF81974.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
Length = 255
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYAPDILCVQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ P+A +F
Sbjct: 58 KSKIK-----GYSGVCIYSKVE----------PIAV--------------------NFLG 82
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
E+ D+EGR +I + F+L N Y P + + R+ +KL F ++ G+
Sbjct: 83 KEIF--DNEGRGIIAYYDDFVLINGYFPNSQALRR-RLVYKLDFLSYIENLIDSLVNGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W + L + D FR + E
Sbjct: 140 NVVICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWIDNFL---NKGYVDTFRIFNKE 194
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W TGA + N G RID+ + + F +V + IL
Sbjct: 195 -PGYYTWWNYRTGAREKNMGWRIDYFVV-------------NEFFKRNVKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 133/326 (40%), Gaps = 89/326 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
M++VT+NVNGLR + + LD F DAD++C QETKL+ ++ +L GY
Sbjct: 1 MRLVTWNVNGLRACLG-----KGFLDFFQRVDADVVCLQETKLQPDQIALEL---PGYRL 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F RV+ P S T G+ GL+
Sbjct: 53 FWNSAE-----KKGYSGTAVFTRVE-PLSVT------------CGI----------GLD- 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F L Y P A +E RI +++Q+ + +
Sbjct: 84 -------AHDHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDK 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ + + GDLN+A ID + + F R + E S F D FR+ +P+R
Sbjct: 136 KKPVVLCGDLNVAHEEIDLKNPKSNRGSAGFSDQERGKMTELLSSGFTDTFRALYPDRTG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
AYT W A + N G RID+ + + L + D H
Sbjct: 196 AYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH--------------------- 234
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
+EGSDH PV + L
Sbjct: 235 -----------AEVEGSDHCPVELVL 249
>gi|218259778|ref|ZP_03475367.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|423344446|ref|ZP_17322158.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
gi|218224906|gb|EEC97556.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|409212844|gb|EKN05878.1| exodeoxyribonuclease III (xth) [Parabacteroides johnsonii
CL02T12C29]
Length = 253
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 122/295 (41%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V + L + L D++C QETKL+ + ++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAVGK--GLPEWLAQEQPDVLCLQETKLQPDQYPAEAFEALGYKAWLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA R + P E G G+E
Sbjct: 59 SAQ-----KKGYSGVAILSRRE----------PDHVEYGM-------------GIE---- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
K D+EGR + D G + +VY P S D R FK+++ Q
Sbjct: 87 ----KYDNEGRFIRADFGDLSVISVYHPSGTSGDE-RQAFKMEWLEDFQNYVVELQKSRP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W L + D FR +P+++
Sbjct: 142 KLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---DAGYIDTFRLLNPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W A N G RID+ + + P Q N H + C +I+
Sbjct: 199 E-YTWWSYRFSARAKNKGWRIDYCMVSEPMKAQVEKAYILN-EAVHSDHCPAVIE 251
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 121/279 (43%), Gaps = 51/279 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V++ + DADI C QE+KL+ ++ +L +GY +++
Sbjct: 1 MKLISWNVNGIRSCVTK--GFLEYFKEMDADIFCIQESKLQEGQIDLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ G G+E+
Sbjct: 56 YAE-----KKGYSGTAIFTKEK----------PLSVSYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D EGR + + +F + VY P + +E R+ +++ + VL ++
Sbjct: 86 ------DKEGRVITLEFENFYMVTVYTPNSKNE-LARLDYRMVWEDAFRDYLKVLDEKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ V GDLN+A ID + + F RS E F D FR +P+ AY+
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGFVDTFRYFYPDEVGAYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
W A N G RID+ L + + D + H+ V
Sbjct: 199 WWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEV 237
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 129/323 (39%), Gaps = 87/323 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R V + DADI C QE+KL+ +++ DL + Y +++
Sbjct: 1 MKIVSWNVNGIRACVKK--GFMDFFKDVDADIFCIQESKLQEGQIQLDL---ENYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P S V+ + ++
Sbjct: 56 YAE-----RKGYSGTAVFTK-QEPLS---VSYGIGEDDD--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ EGRC+ + F L NVY P + D R++ +L + ++ +
Sbjct: 86 ------EPEGRCITLEFEDFYLLNVYTPNS-KRDLSRLEDRLHWEERVRAYIKELDEIKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ GDLN+A ID + + + F R S L+ G F D FR +PE+ ++
Sbjct: 139 VIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEG--FVDSFRHLYPEKDQS 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPG 289
YT W + + N G RID+ + + D
Sbjct: 197 YTWWSYMSKVRERNIGWRIDYFIVSDRLKDSLKD-------------------------- 230
Query: 290 NAPRWKGGMSTRLEGSDHAPVYM 312
GM T + GSDH PVY+
Sbjct: 231 ------AGMHTDVLGSDHCPVYI 247
>gi|169787320|gb|ACA80099.1| putative DNA lyase [Colletotrichum eleusines]
Length = 233
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ D +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFDILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPDQLPGEVDEVTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCVI + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVILEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|114775670|ref|ZP_01451238.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
gi|114553781|gb|EAU56162.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
Length = 263
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 120/268 (44%), Gaps = 54/268 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+T N+NG+R + + + DADI+C QE K +L + ++ D + +
Sbjct: 1 MKIITANLNGIRSATRK--GFWEWFAAQDADILCLQELKAHIHQLPPESLLKDYHRHYHF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + R K P + V L GS ++ D+S
Sbjct: 59 AQ------KPGYSGVALYSR-KQP-DTVHVGL---------------GS--IDPATDWS- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVL-----QGRR 172
+ D+EGR V+TD G + + Y P ++ F QF ++ QGR
Sbjct: 93 ----RFDAEGRFVMTDFGTLSVISAYFPSGSGTPERQAGKMVFLEQFLPLITRLKDQGRE 148
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD+NIA ID R ++G F E R WF L F D+FR +PE
Sbjct: 149 LIICGDINIAHRNIDLKNWRGNRKNSG--FLPEE-RAWFDQCL---NAGFVDLFRQLYPE 202
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILC 253
RE Y+ W + A N G RID+ LC
Sbjct: 203 -REQYSWWSNRGQARANNVGWRIDYHLC 229
>gi|365983476|ref|XP_003668571.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
gi|343767338|emb|CCD23328.1| hypothetical protein NDAI_0B02930 [Naumovozyma dairenensis CBS 421]
Length = 556
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 131/322 (40%), Gaps = 75/322 (23%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGS----LRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVN +R F S L K+ DADII FQE K + + D
Sbjct: 12 LRFLTFNVNAIRTFFHYDPFSSMNENLSKVFSYLDADIITFQELKTETSSIIKWGKLCDF 71
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLET-----SG 108
Y SF S T + GY+GV + R P L V AEEG TG L +G
Sbjct: 72 Y-SFISIPTT----KKGYAGVGCWVRKVEPTHPLYKVLHVTKAEEGITGYLTIKKQGRNG 126
Query: 109 SKI----------MEGLEDFSKD---ELLKIDSEGRCVITDHG-HFILFNVYGPRADSED 154
KI + G E+ + D E L +DSEGRCV+ + + ++ +VY P S
Sbjct: 127 EKIRYRDLPSNDTIGGFENITFDDESEALSLDSEGRCVMVELACNIVVISVYCPANSSRT 186
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA---GPDFAKNE--- 199
F+++F VL G+ + ++GD+N+ ID +A G KNE
Sbjct: 187 LEGELFRMKFLRVLFKRIENLHHLGKEVVLMGDVNVCRDLIDHAEALEVGGISIKNETTG 246
Query: 200 ---------------------FRIWFRSMLVES-------GGSFFDVFRSKHPERR-EAY 230
+R ML +S G D R K R + Y
Sbjct: 247 IEIEAEYQESCRNFILNPDVPYRRLLNQMLTDSIVPELAQTGFLVDTTRMKQSRNRLKMY 306
Query: 231 TCWPSNTGAEQFNYGTRIDHIL 252
T W + NYG+R+D+IL
Sbjct: 307 TVWNTLKNYRPVNYGSRVDYIL 328
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
PLCK H E + R K G+RF++C + G +NP+A+CG+F+W
Sbjct: 510 PLCK-HGEESILRT-SKTSSNPGKRFWICKKPRGDLNNPDASCGFFQW 555
>gi|399573816|gb|AFP49247.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 226
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
+ P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAICCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787364|gb|ACA80121.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium hydrogeniformans]
Length = 254
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 140/329 (42%), Gaps = 92/329 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I ++NVNG+R V++ G L ++ D++ QE +++ ++LK L DGY S+F+
Sbjct: 1 MRIYSWNVNGIRA-VNRKGFL-DWIEEEKPDVLALQEIRIQPEQLKDKLKNIDGYHSYFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + + + P+ +GF G+E F
Sbjct: 59 YGE-----KAGYSGVAIYSKEE----------PLDVWKGF-------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR + ++ F L N+Y P S R+ +KL F+ +G+
Sbjct: 89 ------DYEGRVIAAEYPEFYLLNIYFPNGKSSKE-RLNYKLDFYDATLEYAEELREEGK 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GD N A +D PD KN R W + E+ G F D +R +P+
Sbjct: 142 GVVVSGDYNTAHHPLDL--KNPDANKNTSGFLEIEREWLDKL--ENHG-FIDTYRYFYPD 196
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
+E Y+ W T A + N G RID+ + +L+ ++N DIL D
Sbjct: 197 -KETYSWWSYRTRARERNAGWRIDYHFIS-------EELED------NLNHSDILTD--- 239
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ GSDH PV + L
Sbjct: 240 ----------------VMGSDHCPVTVDL 252
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 124/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + GF G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGF-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|429463013|ref|YP_007184476.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338527|gb|AFZ82950.1| endonuclease [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 261
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 66/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
++I + NVNG+R + +K LD + DI+C QE ++ ++K++L+ G++
Sbjct: 2 LRITSINVNGIRSAIK-----KKFLDWLYNKNPDIVCLQEIRIASHDIKNELLNPLGFKG 56
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
FF + + GYSGV + + K P KI GLED
Sbjct: 57 FFYPAQ-----KNGYSGVGIYTK-KQPM------------------------KITRGLED 86
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----------- 166
+ IDSEGR + D + NVY P +++ R + KL F
Sbjct: 87 KN------IDSEGRVIRIDWEKISIINVYFPSGSNDE--RQKAKLIFLQKFELYLKEIYS 138
Query: 167 --VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR 220
+L R + + GD NIA +D + + K F R W ++ + + DVFR
Sbjct: 139 ESILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDVFR 196
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
HP +E YT W + + + N G RID+
Sbjct: 197 KLHPH-QEQYTWWSNRARSWERNVGWRIDY 225
>gi|413952189|gb|AFW84838.1| hypothetical protein ZEAMMB73_201373 [Zea mays]
Length = 530
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 128/280 (45%), Gaps = 57/280 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELK--SDLVMADGY-E 56
+KI+++NVNGL+ + G S+++L D D++C QETK++ ++++ D ++ DGY
Sbjct: 270 LKIMSWNVNGLKALLKSRGFSVQQLAQREDFDVLCLQETKMQEKDIEVIKDTLL-DGYTN 328
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
SF++C+ + + GYSG A RVK P++ + G G+
Sbjct: 329 SFWTCSVS----KLGYSGTAIISRVK----------PLSIKYGL-------------GIS 361
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HV 167
D D+EGR V + F L Y P + + R+ +++ + +
Sbjct: 362 DH--------DTEGRVVTVEFDDFYLLTAYVPNS-GDGLKRLTYRVTEWDPSLGNYMKEL 412
Query: 168 LQGRRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + + + GDLN A ID D + NE R F + + G F D FR +H
Sbjct: 413 EKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKG--FVDTFRKQH 470
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
P AY+ W A + N G R+D+ L + + HD
Sbjct: 471 PN-VVAYSYWGYRHNARKTNKGWRLDYFLVSESITEKVHD 509
>gi|169787362|gb|ACA80120.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 127/294 (43%), Gaps = 65/294 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNG+R + G + + +ADI C QETK ++ S+ + Y+SF+S
Sbjct: 65 LKLVSWNVNGIRAVIKNGGM--EYIKKENADIFCIQETKCPLHKIPSEAKLP-SYQSFWS 121
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GY+G A F ++ + K+ G+
Sbjct: 122 ---SADKA--GYAGTALFSKI-------------------------APKKVTYGIGRKVH 151
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK--------LQFFHVLQGRR 172
DE EGR + + F L Y P A + R+ ++ L++ L +
Sbjct: 152 DE------EGRVITAEFDRFYLVTAYVPNA-GQGLARLPYREKEWDPDFLEYLRKLDATK 204
Query: 173 -IFVVGDLNIAPAAIDRCDAGPD-------FAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID A PD F E R F +L S + D +R +P
Sbjct: 205 PVIVCGDLNVAHEEIDL--ARPDTNHKTAGFTDQE-RSGFTKLL--SSANLIDTYRHFYP 259
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
+RREAY+ W TGA N G R+D+ L + L D + + C V D
Sbjct: 260 DRREAYSFWSYRTGARLINNGWRLDYFLVSQRILANVGDQE----IRCGVTGSD 309
>gi|169787424|gb|ACA80151.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|299146132|ref|ZP_07039200.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
gi|298516623|gb|EFI40504.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
Length = 253
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 117/269 (43%), Gaps = 56/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + D G + +VY P S D R FK+ ++ LQ R
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVMELQKSRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDAFRTLCPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|451811792|ref|YP_007448247.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|451776950|gb|AGF47949.1| exodeoxyribonuclease III [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 270
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 117/270 (43%), Gaps = 66/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
++I + NVNG+R + +K LD + DI+C QE ++ ++K++L+ G++
Sbjct: 11 LRITSINVNGIRSAIK-----KKFLDWLYNKNPDIVCLQEIRIASHDIKNELLNPLGFKG 65
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
FF + + GYSGV + + K P KI GLED
Sbjct: 66 FFYPAQ-----KNGYSGVGIYTK-KQPM------------------------KITRGLED 95
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH----------- 166
+ IDSEGR + D + NVY P +++ R + KL F
Sbjct: 96 KN------IDSEGRVIRIDWEKISIINVYFPSGSNDE--RQKAKLIFLQKFELYLKEIYS 147
Query: 167 --VLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR 220
+L R + + GD NIA +D + + K F R W ++ + + DVFR
Sbjct: 148 ESILSKRNLLICGDWNIAHTQMDIKNWKNNLNKPGFLPEERNWLSEII--NNYNLVDVFR 205
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDH 250
HP +E YT W + + + N G RID+
Sbjct: 206 KLHPH-QEQYTWWSNRARSWERNVGWRIDY 234
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 118/272 (43%), Gaps = 67/272 (24%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
M+ V++NVNGLR + + S R+L DAD C QETK++ + DL GYE +
Sbjct: 1 MRFVSWNVNGLRAALKKGFMESFREL----DADAFCLQETKMQEGQAILDL---PGYEQY 53
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
F + GYSG A F RVK L VA G +
Sbjct: 54 FYSAE-----KKGYSGTAIFTRVKP--------LSVAYGIGISAH--------------- 85
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQGRR--- 172
D+EGR + + L VY P RA R+ ++ F L G R
Sbjct: 86 --------DNEGRVITMEFDDVYLVTVYTPNAKRALERLDYRMMWEDAFRAFLLGLRAKK 137
Query: 173 -IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ V GDLN+A ID R +AG D + +F + L+++G F D FR+ +
Sbjct: 138 PVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKF-----TELLQAG--FIDTFRALY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
P+R AYT W A + N G RID+ L +
Sbjct: 191 PDRTGAYTWWSYLRHARETNAGWRIDYFLVSA 222
>gi|169787278|gb|ACA80078.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|423306329|ref|ZP_17284328.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|423309121|ref|ZP_17287111.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
gi|392679064|gb|EIY72457.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T00C23]
gi|392685860|gb|EIY79171.1| exodeoxyribonuclease III (xth) [Bacteroides uniformis CL03T12C37]
Length = 254
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 129/295 (43%), Gaps = 57/295 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR V++ + L D++C QETKL+ ++ ++ + A GY+ +
Sbjct: 1 MKIITYNVNGLRAAVTK--GFPEWLAQEQPDVLCLQETKLQPEQYPAEALDALGYKHYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E++
Sbjct: 59 SAQ-----KKGYSGVAILSKQE----------PDHVEYGM-------------GIEEY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +VL+ R
Sbjct: 89 ------DNEGRFIRADFGDVSVVSVYHPSGTSGDE-RQAFKMVWLEKFQEYVLELERTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI A+D D + + F R W L F D FR HP+++
Sbjct: 142 KLILCGDYNICHEAMDIHDPIRNATNSGFLPEEREWMTRFL---NAGFIDSFRWLHPDKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
E YT W + N G RID+ + + P + + V H + C +L++
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEPVRPMLKEARILGDVV-HSDHCPMLLE 251
>gi|406873572|gb|EKD23688.1| hypothetical protein ACD_81C00194G0004 [uncultured bacterium]
Length = 252
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 121/263 (46%), Gaps = 50/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR V + G L + +ADI+C QE KL+ +++ +L + GY ++++
Sbjct: 1 MKIYSWNVNGLRS-VHKKGFL-EWFKKEEADIVCLQEIKLQEEQIPEELRVIKGYTAYYN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GY+GVA + + ST + G+E F
Sbjct: 59 TG-----TRKGYAGVAVYTKQIPRKVSTTL-----------------------GMERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV-------LQGRRI 173
D EGR + D+ FI+ +Y P+ + D + +KL+ + L+G+ +
Sbjct: 89 ------DCEGRFLRLDYDDFIVIALYIPQG-ARDKRNLTYKLEVYDTLLVYLKKLKGKNV 141
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML--VESGGSFFDVFRSKHPERREAYT 231
V+GDLNIA +D + F R L +E G F D FR+++ E Y+
Sbjct: 142 IVIGDLNIAHTELDLARPKQNTKNIMFTPEEREKLDALEKLG-FVDTFRTENKEGGN-YS 199
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
WP A + N G RID++ +
Sbjct: 200 WWPYFANARERNLGWRIDYVFVS 222
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 121/268 (45%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ ++ +AD+ C QE+K++R++ D YE +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFETVNADVFCIQESKMQREQATFDF---PNYEEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA F + K L VA + G
Sbjct: 56 SAE-----KKGYSGVAIFSKTK--------PLSVAYDMG--------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQG----RRI 173
+ D EGR + ++ F L NVY P + E + R++++ F L+ + +
Sbjct: 82 --IAHHDKEGRIICAEYKDFYLVNVYTPNSKRELERLSYRMEWEDDFRAYLKNLEKTKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG F E + L++SG F D FR +P
Sbjct: 140 IVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--MTQLLDSG--FTDTFRHFYPTL 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ LC+
Sbjct: 194 EGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|399573794|gb|AFP49236.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573796|gb|AFP49237.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573798|gb|AFP49238.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573800|gb|AFP49239.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573802|gb|AFP49240.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G+ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWNVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPDQLLGEVDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 83/318 (26%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + DADI C QETKL+ ++ +L +GY +++
Sbjct: 5 KLISWNVNGLRACVKK--GFLDYFNEMDADIFCVQETKLQEGQIDLEL---EGYYDYWNY 59
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + K P++ + G G+E+
Sbjct: 60 AE-----KKGYSGTAVFTKEK----------PISVKMGL-------------GIEEH--- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRRI 173
D+EGR + ++ F L NVY P + + R+++++ + V + + +
Sbjct: 89 -----DNEGRVITLEYDKFFLVNVYTPNS-QQKLARLEYRMSWEDVFRNYLKDLEKNKPV 142
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERREAYTC 232
+ GDLN+A ID + + F RS + E S F D FR +P+ Y+
Sbjct: 143 ILCGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSELLNSGFTDTFRYFYPDIEGVYSW 202
Query: 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAP 292
W A N G RID+ + + + D + H
Sbjct: 203 WSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIH------------------------- 237
Query: 293 RWKGGMSTRLEGSDHAPV 310
T +EGSDH PV
Sbjct: 238 -------TSIEGSDHCPV 248
>gi|169787258|gb|ACA80068.1| putative DNA lyase [Colletotrichum paspali]
gi|169787304|gb|ACA80091.1| putative DNA lyase [Colletotrichum paspali]
Length = 233
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLIPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L ID
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATID 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFEAFVLIGTYSPA--TRDSTRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 65/297 (21%)
Query: 1 MKIVTYNVNGLR--QRVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SG
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGH----- 369
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------- 165
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 370 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 416
Query: 166 HVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 221
+ + + + + GDLN A ID + + F I F + L++ G F D FR
Sbjct: 417 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRK 474
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 475 QHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 526
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 133/326 (40%), Gaps = 89/326 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
M++VT+NVNGLR + + LD F DAD++C QETKL+ ++ +L GY
Sbjct: 1 MRLVTWNVNGLRACLG-----KGFLDFFQRVDADVVCLQETKLQPDQIALEL---PGYRL 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + GYSG A F RV+ P S T G+ GL+
Sbjct: 53 FWNSAE-----KKGYSGTAVFTRVE-PLSVT------------CGI----------GLD- 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F L Y P A +E RI +++Q+ + +
Sbjct: 84 -------AHDHEGRVITAEFDGFFLVCCYTPNAQNE-LARIDYRMQWEDDFRAYLMELDK 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ + + GDLN+A ID + + F R + E S F D FR+ +P+R
Sbjct: 136 KKPVVLCGDLNVAHEEIDLKNPRSNRGNAGFSDQERGKMTELLSSGFTDTFRALYPDRTG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
AYT W A + N G RID+ + + L + D H
Sbjct: 196 AYTWWSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIH--------------------- 234
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
+EGSDH PV + L
Sbjct: 235 -----------AEVEGSDHCPVELVL 249
>gi|257460806|ref|ZP_05625907.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
gi|257442137|gb|EEV17279.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
Length = 252
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 113/276 (40%), Gaps = 58/276 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + G L + D + QE K+ ++ L YE FS
Sbjct: 1 MKLISWNVNGLRAVLGKDGF--AWLAEQNPDFLGLQEIKVSEKDAPKGL-----YELGFS 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVA+ + KS ETS +
Sbjct: 54 QIDLNSAARAGYSGVASLAKFKS---------------------ETSKA----------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
L D EGR + G +LFN+Y P +D R+ +K++F+ QG
Sbjct: 82 --LFFPDDEGRVLQHRFGDVVLFNIYFPNG-QKDEARLAYKMEFYAKFLAYARSLAEQGL 138
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GD+N A ID + + + F R W VE+ G F D FR+ H E R
Sbjct: 139 GVIFCGDVNTAHREIDLANPKANSKTSGFLPIERAWLDE--VEAAG-FVDTFRAVHGELR 195
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
+AY+ W A N G RID+ + Q D
Sbjct: 196 DAYSWWSYRFNARAKNVGWRIDYFFISANLRSQLKD 231
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 89.4 bits (220), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 135/297 (45%), Gaps = 65/297 (21%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 267 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 323
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SG
Sbjct: 324 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGH----- 360
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------- 165
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 361 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 407
Query: 166 HVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 221
+ + + + + GDLN A ID + + F I F + L++ G F D FR
Sbjct: 408 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVDTFRK 465
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 466 QHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 517
>gi|261416712|ref|YP_003250395.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|385791552|ref|YP_005822675.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373168|gb|ACX75913.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325662|gb|ADL24863.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 265
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 57/264 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF- 59
MKI ++NVNG+R + + + D DI+C QE + + ++ S++ +GY +++
Sbjct: 1 MKIYSWNVNGIRSVLKK--GFEDWFSATDPDILCLQEVRAEKNQV-SEIATREGYYTYWN 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+C R + GYSGVA + +++ P A GF +E+F
Sbjct: 58 ACKR-----KKGYSGVAVYSKIE----------PDAVNYGFD-------------IEEF- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QG 170
D EGR + ++L +Y P D R+ +KL+F+ G
Sbjct: 89 -------DEEGRVLQLVFPDWVLNCIYFPNGGQGDD-RLDYKLRFYDAFLENSKQWLADG 140
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
+ + VGD N ID + + F R W VE+G F D FR+ HP+
Sbjct: 141 KHVVTVGDYNTCHKEIDIARPKENENVSGFLPIERAWM-DKYVENG--FVDTFRTLHPDT 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDH 250
R+AY+ W + GA + N G R+D+
Sbjct: 198 RDAYSWWSNRFGARERNVGWRLDY 221
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 66/298 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + G L D DADI QETKL+ +++ +L +GYE +++
Sbjct: 1 MKAVSWNVNGLRACLGK-GFLEYFKD-VDADIFAIQETKLQEGQVELEL---EGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F ++ SP S VA + EE
Sbjct: 56 YAV-----KKGYSGTAVFTKI-SPLS---VAYGIDIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + + +F NVY P + T R+ +++ ++ L G +
Sbjct: 86 ------DAEGRVITLEFENFYFVNVYVPNSQRGLT-RLDYRMKWEDDFREYLIKLDGIKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHP 224
+ GD N+A ID R +AG F E R + E S F D FR +P
Sbjct: 139 VICCGDKNVAHQEIDLKNPKSNRKNAG--FTDEE-----RQKMTELLNSGFIDAFRYLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
++++AYT W A + N G RID+ + + + D++ H+ V + C +L+D
Sbjct: 192 DKKDAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVMGS-DHCPVLLD 248
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 123/279 (44%), Gaps = 64/279 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLDL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAL-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R ++E G F D +R +P
Sbjct: 137 KKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKITR--VLEEG--FIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
E+ AY+ W GA N G R+D+ + + H+ D
Sbjct: 193 EQEGAYSWWSYRMGARAKNIGWRLDYFIISERLKHKILD 231
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 135/297 (45%), Gaps = 65/297 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + +AD+ QETK++ +L DL GY +F
Sbjct: 1 MKLISWNVNGLRAVVKK--DFVTTFQQLNADVFSIQETKMQAGQLDLDL---PGYHQYFF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F + A P++ ++G G+E+F
Sbjct: 56 YAK-----KKGYSGTAVFSK----------AEPISVKQGL-------------GIEEF-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--------GRR 172
D EGR + + + L N Y P + + R+ +++++ VL+ +
Sbjct: 86 ------DDEGRTITLEFPDYYLINSYTPNSQPK-LKRVDYRMRYDDVLREYMLQLSADKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GDLN+A ID + P F+ E R F S L++SG F D FRS HP+
Sbjct: 139 VILCGDLNVAHEEIDLKNPKTNHKNPGFSDQE-RDKF-SELLDSG--FIDSFRSLHPQEI 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA--GPCLHQKHDLQSHNFVTCHVNECDILID 282
+ Y+ W A + N G RID+ + + G L Q D+ + + + H C I +D
Sbjct: 195 K-YSWWSYRFNARKNNAGWRIDYFVVSKNGQQLIQDADILTDIYGSDH---CPIELD 247
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 63/297 (21%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR ++ F +L +L + DI+C QETKL+ +E+K+ L+ DGY
Sbjct: 288 VKVMTWNVNGLRALLKLESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKNTLI--DGY 344
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SGS
Sbjct: 345 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGSDH--- 383
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------- 165
D EGR V + F L N Y P + + R+ ++++ +
Sbjct: 384 ------------DMEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 430
Query: 166 HVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW----FRSMLVESGGSFFDVFRS 221
+ + + + + GDLN A ID + + F I F + ++ G F D FR
Sbjct: 431 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRNAGFTIEERQSFGANFLDKG--FVDTFRK 488
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 489 QHPGV-VGYTYWGYRHGGRKTNRGWRLDYFLVSESIAANVHD----SYILPDINGSD 540
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKTE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DDEGRVITLEFDKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVKKLDETKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 193 LEDAYSWWSYRMNARARNTGWRIDYFVVS 221
>gi|160884274|ref|ZP_02065277.1| hypothetical protein BACOVA_02252 [Bacteroides ovatus ATCC 8483]
gi|156110013|gb|EDO11758.1| exodeoxyribonuclease III [Bacteroides ovatus ATCC 8483]
Length = 253
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 119/269 (44%), Gaps = 56/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V++ ++
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMAWLEDFQKYVMELQKSRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDSFRTLCPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 121/284 (42%), Gaps = 58/284 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNGLR + + + DADI C QETKL+ + + + +GY +F++
Sbjct: 1 MKLVSWNVNGLRACLQK--GFMDYFKAIDADIFCIQETKLQENQKDIEGLDLNGYYAFWN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K S + P
Sbjct: 59 FAE-----KKGYSGTAVFTKYKPLSVSYGIGTP--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + ++ F L N Y P R + R+Q++ F L + +
Sbjct: 87 ----HHDKEGRVITLEYEKFFLVNTYTPNSQRGLTRLDYRMQWEEDFRSYLLKLDSLKPV 142
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F E ++L+ SG F D FR +P++
Sbjct: 143 ILCGDLNVAHQEIDIKNPAANRRNAG--FTDEEREK--MTILLNSG--FIDTFRYFYPDK 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
++AYT W A + N G R+D+ + + D Q H+ V
Sbjct: 197 KDAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEV 240
>gi|169787490|gb|ACA80184.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 42/210 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDAGPDFAKNEFRI--WFRS 206
LN+ D C+ K + W R+
Sbjct: 166 LNVIRDERDTCNIREALRKEGMSVEEWMRT 195
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 48/276 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R V + + DADI C QETKL+ ++ D GY +++
Sbjct: 1 MKLVSWNVNGIRACVKK--GFMDYFNDMDADIFCIQETKLQEGQIDLD---TPGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F ++K P+ ++ GL++
Sbjct: 56 YAI-----KKGYSGTAVFTKMK----------PL---------------QVRYGLDEKKA 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVL-QGRR 172
+E + EGR + ++ F L NVY P + D R+ F+L + +L Q +
Sbjct: 86 EE---CEPEGRILTLEYEDFFLVNVYTPNS-QRDLARLPFRLDWEDRFLAYIKMLDQQKS 141
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ V GDLN+A A ID + + + F R + G F D FR +PE + YT
Sbjct: 142 VIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEERGKMTRLLGEGFSDTFRHFYPELTDKYT 201
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
W + N G RID+ + + D + H
Sbjct: 202 WWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIH 237
>gi|169787274|gb|ACA80076.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R+ +
Sbjct: 1 MFEILEADIVVMQETKIQRKDLSDDMVLVPGWDVAFSLP----KNKKGYSGVAIYTRIAT 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ EEG TG+L S + + + + + L +DSE
Sbjct: 57 -------CCPIRVEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLAGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|169787198|gb|ACA80038.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787210|gb|ACA80044.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787260|gb|ACA80069.1| putative DNA lyase [Colletotrichum hanaui]
gi|169787306|gb|ACA80092.1| putative DNA lyase [Colletotrichum hanaui]
Length = 233
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLRDDMVLVPGWDVAFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|169787230|gb|ACA80054.1| putative DNA lyase [Colletotrichum axonopodi]
Length = 233
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLRDDMVLVPGWDVAFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|169787354|gb|ACA80116.1| putative DNA lyase [Glomerella graminicola]
gi|169787356|gb|ACA80117.1| putative DNA lyase [Glomerella graminicola]
gi|169787358|gb|ACA80118.1| putative DNA lyase [Glomerella graminicola]
gi|169787360|gb|ACA80119.1| putative DNA lyase [Glomerella graminicola]
gi|169787400|gb|ACA80139.1| putative DNA lyase [Glomerella graminicola]
gi|169787402|gb|ACA80140.1| putative DNA lyase [Glomerella graminicola]
gi|169787404|gb|ACA80141.1| putative DNA lyase [Glomerella graminicola]
gi|169787406|gb|ACA80142.1| putative DNA lyase [Glomerella graminicola]
gi|169787408|gb|ACA80143.1| putative DNA lyase [Glomerella graminicola]
gi|169787466|gb|ACA80172.1| putative DNA lyase [Glomerella graminicola]
gi|169787468|gb|ACA80173.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|169787214|gb|ACA80046.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 205
LN+ D C+ K + W R
Sbjct: 166 LNVIREERDTCNIREALRKEGMSVEEWMR 194
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 119/280 (42%), Gaps = 59/280 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + DADI C QETKL+ +++ DL +GY +++
Sbjct: 1 MKFISWNVNGLRAAVKK--GFMDYFNEADADIFCLQETKLQEGQIELDL---NGYYDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P ++ GL
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPL------------------------RVFYGL----- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
+ + D EGR + + F VY P + E R+ +++ F Q +
Sbjct: 81 -SVAEHDQEGRVITLEFEQFYFITVYTPNSQPE-LARLAYRMSFEEAFLNYVKNLDQEKP 138
Query: 173 IFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GDLN+A ID + P F+ E R F ++L ESG F D FR +PE+
Sbjct: 139 VIFCGDLNVAHKEIDLKNPKTNRRNPGFSDEE-RGKFTTVL-ESG--FVDTFRHFYPEKE 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
AY+ W A N G RID+ + + + D + H
Sbjct: 195 GAYSWWSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIH 234
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 113/272 (41%), Gaps = 56/272 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V + LD F DADI C QE+K++ +LK +L +GY
Sbjct: 1 MKFISWNVNGIRACVQ-----KGFLDFFKEADADIFCIQESKMQEGQLKLEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ R GYSG A F + + P S VA + EE
Sbjct: 53 FWNYAE-----RKGYSGTAIFTK-QEPLS---VAYGIGMEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQ----G 170
D EGR + + F VY P + +E R+Q++ +F L+
Sbjct: 86 ---------DKEGRVITLEFEEFYFVTVYTPNSQNELARLDYRMQWETEFLKYLKKLEAK 136
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREA 229
+ + GDLN+A ID + + F R E F D FR +PE+
Sbjct: 137 KPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGKFTELLSAGFIDTFRYFYPEQEGI 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
Y+ W A N G RID+ C CL +
Sbjct: 197 YSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|237719516|ref|ZP_04549997.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|293370159|ref|ZP_06616719.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|336413720|ref|ZP_08594069.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|383111647|ref|ZP_09932456.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|423286352|ref|ZP_17265203.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
gi|423296139|ref|ZP_17274224.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|229451376|gb|EEO57167.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|292634656|gb|EFF53185.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|313696639|gb|EFS33474.1| exodeoxyribonuclease III (xth) [Bacteroides sp. D2]
gi|335934737|gb|EGM96720.1| exodeoxyribonuclease III [Bacteroides ovatus 3_8_47FAA]
gi|392670749|gb|EIY64227.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL03T12C18]
gi|392675039|gb|EIY68481.1| exodeoxyribonuclease III (xth) [Bacteroides ovatus CL02T12C04]
Length = 253
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 117/269 (43%), Gaps = 56/269 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR VS+ L + L + DI+C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNVNGLRAAVSK--GLPEWLAQENPDILCLQETKLQPDQYPGEVFEALGYKSYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GMEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + D G + +VY P S D R FK+ ++ LQ R
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVMELQKSRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L + D FR+ PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGYVDSFRTLCPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMVSEP 226
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 136/326 (41%), Gaps = 83/326 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + +ADI C QETKL QE + ++ + + Y +++
Sbjct: 1 MKLISWNVNGLRACVNK--GFYEYFKEANADIFCLQETKL--QEGQIEMEIGEAYHQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P S + GLE+
Sbjct: 57 YAE-----KKGYSGTAVFTKME-PLS------------------------VRYGLEE--- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRRI 173
+ EGR + + F L VY P A D R+ ++L+ + L G++
Sbjct: 84 ----DHEPEGRVITLEFQDFYLVTVYTPNA-KRDLSRLDYRLEWEDRFRNYLLQLDGKKP 138
Query: 174 FVV-GDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYT 231
VV GDLN+A ID +A + + F R M F D +R +P++ +AYT
Sbjct: 139 VVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAGFVDTYRYFYPDQTDAYT 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W + N G RID+ L + +R P
Sbjct: 199 WWSFMPKVRERNIGWRIDYFLAS-----------------------------ERLAPALL 229
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLGEV 317
+ G+ +++ GSDH PV + LG +
Sbjct: 230 ---RAGIDSQVMGSDHCPVVLELGTI 252
>gi|169787422|gb|ACA80150.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 115/275 (41%), Gaps = 62/275 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + + DADI C QE+K++ +L +L +GY +++
Sbjct: 1 MKLISWNVNGIRACVQK--GFLEFFQEADADIFCIQESKMQAGQLDLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V + EE
Sbjct: 56 YAE-----KKGYSGTAVFTK-KEPLS---VQYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVLQG----RRI 173
D EGR + + F VY P + SE + RIQ++ F L+G + +
Sbjct: 86 ------DKEGRVITLEFEEFYFVTVYTPNSQSELARLSYRIQWETDFLAYLKGLEQKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
GDLN+A A ID R +AG +E R F +L F D FR +PE
Sbjct: 140 IFAGDLNVAYAEIDLKNPKTNRKNAG---FTDEERAKFGEVL---KAGFIDTFRYFYPEM 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
Y+ W A N G RID+ C L +
Sbjct: 194 EGIYSWWSYRFSARAKNAGWRIDY-FCVSESLKDR 227
>gi|451979745|ref|ZP_21928157.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
gi|451763024|emb|CCQ89356.1| Exodeoxyribonuclease [Nitrospina gracilis 3/211]
Length = 254
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 117/273 (42%), Gaps = 59/273 (21%)
Query: 1 MKIVTYNVNGLRQRVSQ-FGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
M I ++NVNG+R + FG ++S D D++C QETK +++ ++ +GYE+++
Sbjct: 1 MLIYSWNVNGIRAVAKKGFGDW---MESVDPDVVCLQETKAHPEQVPPEVAYPEGYEAYW 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
C T R GYSGVA F + K P G G+E F
Sbjct: 58 -CPAT----RKGYSGVAVFSKTK----------PKQVHYGM-------------GIERF- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL----------Q 169
DSEGR + + F L N+Y P S D R+QFK++++ Q
Sbjct: 89 -------DSEGRYLRLEFTKFDLLNIYFPNGTSGDE-RLQFKMEYYDAFLDHCETLRKKQ 140
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 225
+++ + GD+N A ID +A + + F R W + + D FR + +
Sbjct: 141 KKKLVICGDVNTAHREIDLKNAKQNEKNSGFLPMEREWIDKFIAH---GYVDTFR-EFCQ 196
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
+ YT W A N G RID+ L
Sbjct: 197 EPDNYTWWTYRANARARNIGWRIDYFFVTRDLL 229
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 116/264 (43%), Gaps = 51/264 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ + + DAD+ C QETKL+ +++ +L GYE +++
Sbjct: 1 MKLISWNVNGLRAAVTK--GFMESFEKLDADMFCLQETKLQLHQIELEL---PGYEQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F RVK P+ G G+E+
Sbjct: 56 SAV-----KKGYSGTAIFTRVK----------PLNVIYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + ++ +F L Y P + E R+++++ + + +
Sbjct: 86 ------DQEGRVITAEYDNFYLVTCYTPNSQRE-LARLEYRMTWEDAFRAYLLELDAKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID + + F R + E F D FR +P+ +AY+
Sbjct: 139 VILCGDLNVAHNEIDLKNPKTNRKNAGFTDEEREKMTELLNAGFTDTFRKLYPDVTDAYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAG 255
W A N G RID+ + +
Sbjct: 199 WWSYMGKARDRNVGWRIDYFITSA 222
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 115/268 (42%), Gaps = 40/268 (14%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNGLR + + S ++ DADI+ QETKL+ +++ DL GY +S
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVAELDADILGLQETKLQEGQVELDL---PGYHQVWS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A FCR + P S +AA GL D
Sbjct: 66 YAE-----RKGYSGTAVFCR-EEPLSVRHADAVLAAGRA-------------AGLSDDEL 106
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ---G 170
+ + +EGR + F +VY P A E R+ ++ F L+ G
Sbjct: 107 ELVAVAATEGRVCALEFERFWFVDVYTPNAQGE-LARLSTRMAWDDAYRAFLRSLEDETG 165
Query: 171 RRIFVVGDLNIAPAAID----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD N+A ID + + G +E R F +L + D FR+ +P
Sbjct: 166 KPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERAKFGELL---DAGYTDTFRAANPNL 222
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ L +
Sbjct: 223 EGAYSWWSYRFNARKNNAGWRIDYFLVS 250
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 65/298 (21%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY 55
+K++T+NVNGLR + F +L +L + DI+C QETKL+ +E+K L+ DGY
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSAL-QLAQRENFDILCLQETKLQVKDVEEIKKTLI--DGY 332
Query: 56 E-SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
+ SF+SC+ + + GYSG A R+K P++ G TGL SGS
Sbjct: 333 DHSFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGL---SGSDH--- 371
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------- 165
D+EGR V + F L N Y P + + R+ ++++ +
Sbjct: 372 ------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLSNHIK 418
Query: 166 HVLQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFR 220
+ + + + + GDLN A ID + + F + E R F + ++ G F D FR
Sbjct: 419 ELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTEEE-RQSFGANFLDKG--FVDTFR 475
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECD 278
+HP YT W G + N G R+D+ L + HD +++ +N D
Sbjct: 476 KQHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQSIAANVHD----SYILPDINGSD 528
>gi|169787216|gb|ACA80047.1| putative DNA lyase [Colletotrichum caudatum]
gi|169787218|gb|ACA80048.1| putative DNA lyase [Colletotrichum caudatum]
Length = 233
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787272|gb|ACA80075.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787318|gb|ACA80098.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787322|gb|ACA80100.1| putative DNA lyase [Colletotrichum jacksonii]
gi|169787324|gb|ACA80101.1| putative DNA lyase [Colletotrichum jacksonii]
Length = 233
Score = 88.6 bits (218), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R+ +
Sbjct: 1 MFEILEADIVVMQETKIQRKDLSDDMVLVPGWDVAFSLP----KNKKGYSGVAIYTRIAT 56
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ EEG TG+L S + + + + + L +DSE
Sbjct: 57 -------CCPIRVEEGITGILPAPNSSTSFRDLPPAQQIGGYPRPDQLTGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVVLAGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + ++ DAD C QETK++ +L DL Y +++
Sbjct: 1 MKFISWNVNGLRAVVKK--DFEAEFEALDADFFCIQETKMQENQLSLDL---PNYHQYYN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG F + + P++ G
Sbjct: 56 YAE-----QKGYSGTGIFTKHE----------PLSVHYGIN------------------- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ ++D EGR + ++ F L Y P + E R+ F++Q+ Q +
Sbjct: 82 --VPELDHEGRTITLEYKSFFLVTCYTPNSGHE-LKRLDFRMQWDPAFQSYLLKLNKRKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A + ID +AG D + F + L++SG F D +R +P
Sbjct: 139 VIICGDLNVAHSEIDLKSPTSNHHNAGFTDEERENF-----TTLLDSG--FIDTYRYFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+++E Y+ W T A + N G RID+ L +
Sbjct: 192 DKKEKYSWWSYRTKAREVNSGWRIDYFLAS 221
>gi|50308837|ref|XP_454423.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643558|emb|CAG99510.1| KLLA0E10473p [Kluyveromyces lactis]
Length = 499
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 152/374 (40%), Gaps = 100/374 (26%)
Query: 1 MKIVTYNVNGLRQRVSQF------GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R + SL+ + F ADI+ QE K+ + + S +G
Sbjct: 10 VRFVTFNVNGVRTLFQHYPFSRMNNSLKLAFELFQADIVTLQELKIDAKSI-SKWGKVEG 68
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKI-- 111
Y+S+ + ++ R GYSGV + R S L V AEEG TGLL + I
Sbjct: 69 YQSYITISQK----RKGYSGVGCWIRTPSEDDPLRHHLKVIKAEEGITGLLRVQANGISY 124
Query: 112 ---------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSE----DTVR 157
GL+ +++LL IDSEGRC+I + + ++F+ Y P S+ + R
Sbjct: 125 RESSEGIGGYTGLDFADENDLLDIDSEGRCIIIELACNVVIFSTYCPANSSQTEEGELSR 184
Query: 158 IQFKLQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCDAGPD------------------ 194
+ F F ++ G+ + ++GD+N+ D A +
Sbjct: 185 LTFLKLLFKRIRNLHGLGKHVVLMGDINVCRDLKDHATALDESSISLSQQKTGSEIEEKF 244
Query: 195 ------FAKNEFRIWFR---SMLVES-------GGSFFDVFRS-KHPERREAYTCWPSNT 237
F + RI R +ML +S G D R + +R + YT W +
Sbjct: 245 NEKCVQFIMDPSRIGRRLLNTMLCDSIISKYAQEGILVDSTRKIQGRDRLKMYTVWNTLL 304
Query: 238 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGG 297
NYG+R+D+I + + ++ + DIL
Sbjct: 305 NTRPVNYGSRVDYIFVSKG-------------LKDNITDGDIL----------------- 334
Query: 298 MSTRLEGSDHAPVY 311
T + GSDH PV+
Sbjct: 335 --TTIMGSDHCPVF 346
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 561 METSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKW 613
M P+C+ H E V RV K +FG++F+VC R++G +PEA+CG+F+W
Sbjct: 448 MLGKAPVCE-HGEEAVLRV-SKTDKSFGKKFWVCNRSKGEKDDPEASCGFFQW 498
>gi|169787240|gb|ACA80059.1| putative DNA lyase [Glomerella tucumanensis]
gi|169787246|gb|ACA80062.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787292|gb|ACA80085.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787482|gb|ACA80180.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787484|gb|ACA80181.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 205
LN+ D C+ K + W R
Sbjct: 166 LNVIREERDTCNIREALRKEGMSVEEWMR 194
>gi|29346040|ref|NP_809543.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|383122288|ref|ZP_09942982.1| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
gi|29337934|gb|AAO75737.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|382984421|gb|EES70705.2| exodeoxyribonuclease III (xth) [Bacteroides sp. 1_1_6]
Length = 253
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYNVNGLR S+ L + L + DI+C QETKL+ + +++ A GY+++
Sbjct: 1 MKIITYNVNGLRAAASK--GLPEWLVQENPDILCLQETKLQPDQYPAEVFEALGYKAYLY 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIEAY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR--- 172
D+EGR + D G + +VY P S D R FK+ + +V + R+
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQAFKMVWLEDFQKYVTELRKTRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NI ID D + + F R W L F D FR +PE++
Sbjct: 142 NLILCGDYNICHEPIDIHDPVRNATNSGFLPEEREWMTRFL---SAGFIDSFRLLYPEKQ 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257
E YT W + N G RID+ + + P
Sbjct: 199 E-YTWWSYRFNSRAKNKGWRIDYCMTSEPV 227
>gi|169787420|gb|ACA80149.1| putative DNA lyase [Glomerella graminicola]
gi|169787426|gb|ACA80152.1| putative DNA lyase [Glomerella graminicola]
gi|169787428|gb|ACA80153.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FFS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVFFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 111/266 (41%), Gaps = 52/266 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R V + +++ SFDAD+ C QETK + ++K L YE F
Sbjct: 1 MKLVSWNVNGIRASVKK--GFEEVVSSFDADVFCVQETKAQDDQVKEALAGISDYELF-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C KG YSG A + K P + T D K
Sbjct: 57 CNSAEKKG---YSGTAILSK-KKPLTFTV---------------------------DMGK 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
+E D+EGR ++ F L NVY P R D F + + + +
Sbjct: 86 EEH---DTEGRITHVEYEEFHLVNVYVPNSGSGLKRLDYRSIWDKDFTAYLKKLSESKPL 142
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKN----EFRI-WFRSMLVESGGSFFDVFRSKHPERRE 228
+ GD N+A A D + ++ K + I F ++L E + D FR+ HP
Sbjct: 143 IITGDFNVAHTANDLANPKSNYNKTSGFTQVEIDGFDAILKEL--NLVDSFRTLHPTTFH 200
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W GA N G RID+ L +
Sbjct: 201 KYTFWSMRGGARGRNVGWRIDYFLVS 226
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 88.6 bits (218), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL +GY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P + V + E
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDLEGVYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 83/323 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR + + + + DAD C QETK+ Q ++D +GY +
Sbjct: 1 MKFVSWNVNGLRACLKK--GFEETFRTLDADFFCIQETKM--QPGQADFA-PEGYTEYIY 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GYSG A + R T + GLE+
Sbjct: 56 ---SADK--KGYSGTAIWAR-------------------------TPALSVRYGLEEDLH 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
+ EGR + ++ F L N+Y P + +E RI +++Q + L ++
Sbjct: 86 NH------EGRAITLEYPDFYLVNLYVPNSQNE-LARIDYRMQWEDDLRRYLQALDAQKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ + GDLN+A ID + GP+ F R L E F D FR HP+ Y+
Sbjct: 139 VILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGFTDTFRHLHPDATGIYS 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W A + N G RID+ L + N + + + DIL+D
Sbjct: 199 WWSMRFRARERNAGWRIDYFLVS-------------NRLAPQIRKADILMD--------- 236
Query: 292 PRWKGGMSTRLEGSDHAPVYMCL 314
+ GSDH PV + L
Sbjct: 237 ----------ILGSDHCPVTLEL 249
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 116/267 (43%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK V++NVNGLR ++ + LD F DADI C QETK++ + + DL GY
Sbjct: 1 MKFVSWNVNGLRACLN-----KGFLDFFREADADIFCLQETKMQEGQAELDL---PGYLQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSS-TEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+++ + GYSG A F + K P S ++ P TG
Sbjct: 53 YWNSAE-----KKGYSGTAVFTK-KEPLSVCYDIRHP-----DHTG-------------- 87
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL-------- 168
EGR + + F L NVY P + E VR+ +++++ +
Sbjct: 88 ------------EGRAITLEFESFYLVNVYTPNSQRE-LVRLPYRMEWENAFREYVTQLD 134
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERR 227
+ + + + GDLN+A ID +A + F R L E S F D FR +P+
Sbjct: 135 EKKPVIICGDLNVAHQEIDLKNAKSNIGNAGFSYEERGKLTELLASGFLDSFRELYPDLT 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W A Q N G RID+ L +
Sbjct: 195 GAYTWWSYMFKARQNNAGWRIDYFLIS 221
>gi|284035454|ref|YP_003385384.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
gi|283814747|gb|ADB36585.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
Length = 254
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 105/264 (39%), Gaps = 58/264 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++++YN+NG+R + L L DI+CFQE K + + GY+ +
Sbjct: 1 MQLISYNINGIRAAIRN--GLLDWLAQNQFDILCFQEVKATTDVVDLSVFEQLGYQYHWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF ++ LPV
Sbjct: 59 AAE-----KKGYSGVATFSKIAPTNVVLGCGLPV-------------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR----- 172
D EGR + TD G L N Y P + + V+++F F+ +Q R
Sbjct: 88 -----YDCEGRILRTDFGDLTLLNCYFPSGTTGEVRQGVKMEFLRDFYQFVQELRKERPK 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ VVGD NIA AID D P KN E R W S G D FR KHP
Sbjct: 143 VIVVGDYNIAHNAIDIHD--PVRNKNTTGFLPEERAWMDSWF---GSGMTDGFRYKHPT- 196
Query: 227 REAYTCWPSNTGAEQFNYGTRIDH 250
AY+ W GA N G RID+
Sbjct: 197 DVAYSWWSYRAGARTNNKGWRIDY 220
>gi|319940717|ref|ZP_08015059.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319805868|gb|EFW02635.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 263
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 108/265 (40%), Gaps = 59/265 (22%)
Query: 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
+I+T+N NG+R R F LR + D++C QE K + +L DL G+ +
Sbjct: 2 FRIITFNANGIRSASRKGFFTWLRTM----SPDVLCMQELKAQESDLTEDLRTPLGFRGY 57
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
F C + + GYSG + RVK P A GF G +F
Sbjct: 58 FHCAQ-----KKGYSGCGLWSRVK----------PFAVRTGF-------------GNSEF 89
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--------- 169
D+EGR V D G I+ +VY P S D R K +F +
Sbjct: 90 --------DAEGRYVEADFGSVIVISVYFPSGSSSDD-RQSAKFRFLDAFKVHMDELRQS 140
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPE 225
GR + + GD+NIA ID + + + F R W + G + DVFR P
Sbjct: 141 GREVIICGDINIAHKEIDLKNWKGNLDHSGFLPEERAWLDQRFGKEG--WVDVFRMLDP- 197
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDH 250
R E YT W A N G RID+
Sbjct: 198 RPERYTWWSQRGQARAKNVGWRIDY 222
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 124/294 (42%), Gaps = 58/294 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNG+R V + LD F DAD+ C QETKL+ ++ +L Y +
Sbjct: 1 MKLVSWNVNGIRACVG-----KGFLDYFYQIDADVFCIQETKLQEGQISLELKDHSQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F + K P++ + G G E
Sbjct: 56 Y--------AVKKGYSGTAIFSKKK----------PLSVQYGI-GTTEH----------- 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
DSEGR + + F L N+Y P + D R+ +++ +F L
Sbjct: 86 ---------DSEGRAITLEFEEFYLVNIYTPNS-QRDLARLNYRVAWEDYLREFLQELDT 135
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERRE 228
++ + + GD+N+A ID + + + F R + E F D FR +PE+
Sbjct: 136 KKPVILCGDMNVAHHEIDLKNPKSNMKNSGFTPEERGKMTELLNNGFVDTFRHLNPEKEN 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
YT W + N G RID+ L + D Q H+ + + C +L++
Sbjct: 196 VYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHSDIMGS-DHCPVLLE 248
>gi|399573792|gb|AFP49235.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|399573812|gb|AFP49245.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 237
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 57/243 (23%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L+ D+V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
+L Y P + D+ R F+L++ + L G+++ + GDLN+ +D C+
Sbjct: 110 VLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRDEMDTCNV 167
Query: 192 GPDFAKNEFRI--W--------FRSMLVES-----------GGSFFDVFRSKHPERREAY 230
K + W F ++ + +D+ R HP R+ +
Sbjct: 168 REALRKEGMSVEEWMGMPSRRLFNHLVFDGRVTGERGEGREAPVLYDLTRIFHPTRQSMF 227
Query: 231 TCW 233
TCW
Sbjct: 228 TCW 230
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 121/272 (44%), Gaps = 69/272 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F ADI C QETKL+ +++ +L DGY
Sbjct: 1 MKLISWNVNGLRACVG-----KGFLDYFKEQQADIFCLQETKLQEGQIELEL---DGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P++ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKEK----------PISVHYGI-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + E R+ +++++ + +
Sbjct: 85 H--------DKEGRVITLEFEKFYMITVYTPNS-QEKLARLDYRMKWEEDFKNYLLELDK 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG F+ E + L+ESG F D FR
Sbjct: 136 KKPVIVCGDLNVAHKEIDLKNPKTNRKNAG--FSDEEREK--MTKLLESG--FVDSFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P + + Y+ W A N G RID+ L +
Sbjct: 190 YPNKTDIYSWWSYRFSARAKNAGWRIDYFLVS 221
>gi|219685209|ref|ZP_03540029.1| exodeoxyribonuclease III [Borrelia garinii Far04]
gi|219673305|gb|EED30324.1| exodeoxyribonuclease III [Borrelia garinii Far04]
Length = 254
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + +F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 67/267 (25%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR ++ + LD F DADI C QE+K++ +++ +L DGY +
Sbjct: 3 KLISWNVNGLRACIN-----KGFLDYFKKADADIFCIQESKVQPGQIELEL---DGYHQY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ R GYSG A F R+K P+ + G G+++
Sbjct: 55 WNYAE-----RKGYSGTAVFTRIK----------PLCVQNGI-------------GIDEH 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR--- 172
D EGR + + ++ L NVY P A E R++++ F + L G +
Sbjct: 87 --------DREGRVITLEFDNYYLVNVYTPNAKKELERLDYRMKWEDDFRNYLVGLKAKK 138
Query: 173 -IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GD+N+A ID R AG +E R F +L F D FR +P
Sbjct: 139 PVIVCGDMNVAHKEIDLKNPESNRRSAG---FTDEERAKFTELL---NAGFIDTFRFFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHI 251
++ AYT W A N G RID+
Sbjct: 193 DKTGAYTWWSYMFNARARNAGWRIDYF 219
>gi|169787300|gb|ACA80089.1| putative DNA lyase [Colletotrichum miscanthi]
Length = 233
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVIQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L F + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGFLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|384085723|ref|ZP_09996898.1| exodeoxyribonuclease III Xth [Acidithiobacillus thiooxidans ATCC
19377]
Length = 253
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 133/322 (41%), Gaps = 82/322 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++ ++NVNG R + L+ + D++C QETK +L + +GY S ++
Sbjct: 1 MRLYSWNVNGWRAACRK--GLQDWVKETGPDLLCTQETKADPAKLTAAESRLEGYGSCWA 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVATF ++ P ++ L G+E F
Sbjct: 59 VAE-----RAGYSGVATFSKI--PGQTSHAGL---------------------GIERF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQ----GR 171
D EGR V+TD G F L+NVY P +D+ R+ FKL F+ H+ Q GR
Sbjct: 89 ------DREGRVVVTDCGDFDLYNVYFPNG-KKDSERLAFKLDFYAAFLAHINQKAAAGR 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAY 230
+ GD+N A ID + + F R+ + + + D FR HP+ Y
Sbjct: 142 PVIFCGDVNTAHQPIDLARPKENQRISGFLPEERACMDQWQQAGWVDSFRHLHPDEAR-Y 200
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W T A + G R+D+ +HQ L+ R
Sbjct: 201 SWWSQRTDARSRDIGWRLDYFW-----VHQS------------------LLPRLR----- 232
Query: 291 APRWKGGMSTRLEGSDHAPVYM 312
G++T + GSDH PV++
Sbjct: 233 ----AAGIATEVMGSDHCPVWL 250
>gi|325281386|ref|YP_004253928.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
gi|324313195|gb|ADY33748.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
Length = 257
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 128/300 (42%), Gaps = 62/300 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI+TYNVNGLR +S+ L DI+C QETK + ++ + A GY SFF
Sbjct: 2 IKIITYNVNGLRSALSK--GFTDWLAEELPDIVCLQETKAQPDQIPTLEFEALGYRSFFF 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA R+ P E G G++++
Sbjct: 60 SAE-----KKGYSGVAILTRIT----------PDHLEYGM-------------GMQEY-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQ----GR 171
D EGR + D+G + +VY P + + R FK+++ +V++ +
Sbjct: 90 ------DREGRFLRADYGDLSIVSVYHPSGTTGEE-RQAFKMKWLEDFRHYVMKLSKTRK 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD NI ID D + + F R W S+ +ESG F D FR HPE
Sbjct: 143 KLILCGDYNICHRPIDIHDPVRNANSSGFLPEEREWM-SLFLESG--FTDTFRYFHPEEP 199
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAG---PCLHQKHDLQSHNFVTCHVNECDILIDYK 284
YT W A N G RID+ + + P L + L H + C +++ K
Sbjct: 200 HQYTWWSFRANARNNNKGWRIDYCMVSPEVIPLLKDAYILPQ----VKHSDHCPAVVELK 255
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 114/267 (42%), Gaps = 57/267 (21%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V++ G L +L DADI+ QE K +L L GY+SF+
Sbjct: 231 KLISWNVNGLRA-VAKNGFL-DVLHELDADILALQEIKAHPDQLDDQLRNVSGYQSFWHS 288
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ + GY+G A F ++ P +++ G+E
Sbjct: 289 AK-----KKGYAGTAVFSKI-PPL------------------------RVLYGMEQ---- 314
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RRI 173
+ D EGR + ++ F L N Y P A E R+ FK +F L + +
Sbjct: 315 --PQFDDEGRVLTLEYPDFYLINTYSPNAQPE-LKRLAFKQEFNRTLLAYMDRLRSEKTV 371
Query: 174 FVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ GDLN+A ID + P F++ E R W ++ + D FR + E +
Sbjct: 372 VLCGDLNVAHKEIDLANPKANVKNPGFSEQE-RAWMDELI---AAGYVDTFRQFNQEAGQ 427
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAG 255
YT W A N G RID+ + G
Sbjct: 428 -YTWWSYRFNARAKNIGWRIDYFIVDG 453
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 118/274 (43%), Gaps = 73/274 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 6 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 56
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P S VA + EE
Sbjct: 57 QYFYSAE-----KKGYSGTAIFTRVK-PLS---VAYGLGIEEH----------------- 90
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ 169
D EGR + + L VY P + + R+ ++L F L+
Sbjct: 91 ----------DHEGRVITMEFEDIYLVTVYTPNSKNA-LARLDYRLVWEDAFRAFLLDLR 139
Query: 170 GRR-IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVES-GGSFFDVFR 220
++ + V GDLN+A ID R +AG F E R L E G F D FR
Sbjct: 140 AKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG--FTDEE-----RGKLTELLGAGFIDTFR 192
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ +P+ AYT W A + N G RID+ L +
Sbjct: 193 ALYPDLTGAYTWWSYLRHARETNAGWRIDYFLVS 226
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 121/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DS DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFDSVDADIFCLQETKLQAGQIDLDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG F + + P++ + G G+E+
Sbjct: 57 ------AVKKGYSGTXXFTKKE----------PLSVQYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEKFFMVTVYTPNSQAE-LKRLDYRMTFEDAILAYVKKLDETKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTAFL-EAG--FVDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 193 LEDAYSWWSYRMNARARNIGWRIDYFVVS 221
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 120/267 (44%), Gaps = 67/267 (25%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR ++ + LD F DADI C QE+K++ +++ +L DGY +
Sbjct: 3 KLISWNVNGLRACIN-----KGFLDYFKKADADIFCIQESKVQPGQIELEL---DGYHQY 54
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ R GYSG A F R+K P+ + G G+++
Sbjct: 55 WNYAE-----RKGYSGTAVFTRIK----------PLYVQNGI-------------GIDEH 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR--- 172
D EGR + + ++ L NVY P A E R++++ F + L G +
Sbjct: 87 --------DREGRVITLEFDNYYLVNVYTPNAKKELERLDYRMKWEDDFRNYLVGLKAKK 138
Query: 173 -IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GD+N+A ID R AG +E R F +L F D FR +P
Sbjct: 139 PVIVCGDMNVAHKEIDLKNPESNRRSAG---FTDEERAKFTELL---NAGFIDTFRFFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHI 251
++ AYT W A N G RID+
Sbjct: 193 DKTGAYTWWSYMFNARARNAGWRIDYF 219
>gi|169787244|gb|ACA80061.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787290|gb|ACA80084.1| putative DNA lyase [Colletotrichum sublineola]
gi|169787486|gb|ACA80182.1| putative DNA lyase [Colletotrichum sublineola]
Length = 233
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ ++ +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGV + R
Sbjct: 1 MFETLEADIVVMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVVIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DELL------KID 127
P+ AEEG TG+L S D + D+LL +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPETQQIGGYPRPDQLLGEVDETTLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDAGPDFAKNEFRI--WFR 205
LN+ D C+ K + W R
Sbjct: 166 LNVIRDERDTCNIREALRKEGMSVEEWMR 194
>gi|294659648|ref|XP_462042.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
gi|199434123|emb|CAG90528.2| DEHA2G11814p [Debaryomyces hansenii CBS767]
Length = 565
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 149/363 (41%), Gaps = 87/363 (23%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRK----LLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ +++NVNG + + + L++ +S + D++ QE KL + + ++
Sbjct: 26 IRYISFNVNGAKTLFNYHPWNQLQQNYDLFFNSLEGDVVSLQELKLSPSNISNVNIGNLT 85
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLETSGSK 110
++SF S +T + GYSGV F R+ P V AEEG TG L S
Sbjct: 86 KFKSFISLPKT----KKGYSGVGLFVRIPETDEPEIVRHNLTVVKAEEGLTGFL-NSADY 140
Query: 111 IMEGLEDFSK-----------DEL--LKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
D K DE+ LKIDSEGRCV I + I+F++Y P
Sbjct: 141 PQSRYRDLDKELSIGGYPEEIDEVKGLKIDSEGRCVCIELASNIIVFSLYCPANSIGSEE 200
Query: 157 RIQFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCD---------------- 190
++L+F +L GR + ++GD+N++ ID D
Sbjct: 201 GESYRLEFLKILLGRCHYLKHIMGKDVIIIGDINVSLDLIDHADTMNEKVKQKIVKPVRN 260
Query: 191 ----AGPDFAKNEFR--IWFR--------------SMLVESGGS------FFDVFRSKHP 224
+G +F K ++ I F+ S L S + +D R
Sbjct: 261 GEGNSGTEFEKINYKQCIDFKVSTPARKLLNSYTISTLDPSPANRSESQFLYDTTRYTQG 320
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ---KHDLQSHNFVTCHVNECDILI 281
R YT W + TGA Q NYG+RID IL + L + K D+ + + H C I
Sbjct: 321 RRMGMYTVWNTLTGARQSNYGSRIDLILTSSDVLLKSISKADIWPYIMGSDH---CPIFT 377
Query: 282 DYK 284
D++
Sbjct: 378 DFE 380
>gi|343127835|ref|YP_004777766.1| exodeoxyribonuclease III [Borrelia bissettii DN127]
gi|342222523|gb|AEL18701.1| exodeoxyribonuclease III [Borrelia bissettii DN127]
Length = 255
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYAPDILCVQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVAYYDDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSLVGGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTQIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ L + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFLV-------------NEFFRRNVKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
+ GSDH PV++ L +V
Sbjct: 236 --------------DEVMGSDHCPVFLELTDV 253
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL +GY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P + V + E
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDLEGIYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|392412977|ref|YP_006449584.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
gi|390626113|gb|AFM27320.1| exodeoxyribonuclease III [Desulfomonile tiedjei DSM 6799]
Length = 259
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 118/270 (43%), Gaps = 56/270 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
+++++NVNG+R V + G L + L+ DI+C QE K + L+ L GY S+++C
Sbjct: 6 RLLSWNVNGIRG-VQKKGFL-EWLERESPDILCLQEIKAQPDNLEICLTEPPGYTSYWNC 63
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ R GYSGVA + + + T V L + +
Sbjct: 64 AQ-----RKGYSGVAVYTKER----PTSVGLTMGID------------------------ 90
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRR 172
+ D EGR + D FILFNVY P R+Q+K++F+ + R
Sbjct: 91 ---RFDVEGRFLRLDFPDFILFNVYFPNGKMGPE-RLQYKMEFYDAFLSMLQELRKEQPR 146
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ VGD+N A ID + + F R W ++ E + D FR +P+ E
Sbjct: 147 LVFVGDVNTAHNEIDLARPKANEKVSGFLPIERRWMDKVVSE---GYVDTFRHAYPDAVE 203
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
Y+ W +GA + N G RID++ L
Sbjct: 204 -YSWWDLKSGARKRNVGWRIDYVFVTKEML 232
>gi|448112527|ref|XP_004202119.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
gi|359465108|emb|CCE88813.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
Length = 464
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 138/330 (41%), Gaps = 82/330 (24%)
Query: 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLD-SFD---ADIICFQETKLRRQELKS-DLVMAD 53
++ V++NVNG++ + + + + D +FD ADII QE KL LK LV
Sbjct: 24 IRFVSFNVNGVKTLFNYHPWNTFSQQFDPAFDFLKADIISLQELKLSSTTLKDLKLVSLK 83
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-----VAAEEGFTGLLETSG 108
Y+SF S R + GYSGV F R+ P +V + V AEEG +G L++
Sbjct: 84 NYKSFISLPRI----KKGYSGVGLFVRI--PDDKEDVTVKSSLRIVKAEEGVSGFLKSPE 137
Query: 109 -----------SKIMEGLEDFSKDELLKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
S + G +++D EGRC+ I + ++F+VY P S+
Sbjct: 138 DPERCYRDLPESDSIGGYPRIDNTLGVELDKEGRCICIELASNLVVFSVYCPANSSQTQT 197
Query: 157 RIQFKLQFFHVL----------QGRRIFVVGDLNIAPAAIDRCD---------------- 190
+++ F L + + V+GD+N+ ID D
Sbjct: 198 GETYRMNFLRALFERCYNLKYVHKKEVVVLGDINVCVDLIDHADELNARVKNNLVTNPIL 257
Query: 191 -----AGPDFAK------NEF------RIWFRSMLVES--------GGSF-FDVFRSKHP 224
+G F + N+F R S +V+S G +F FD R K
Sbjct: 258 LGSPNSGNLFERANVEECNKFKSSTPARKLLNSYVVQSENFKDLSTGRNFLFDSTRIKQE 317
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
R +T W + T A Q NYG+RID IL +
Sbjct: 318 RRMNMFTVWNTLTNARQSNYGSRIDLILAS 347
>gi|219684183|ref|ZP_03539127.1| exodeoxyribonuclease III [Borrelia garinii PBr]
gi|219672172|gb|EED29225.1| exodeoxyribonuclease III [Borrelia garinii PBr]
Length = 255
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCIQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + +F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNVKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL +GY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P + V + E
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDIEGVYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 112/265 (42%), Gaps = 56/265 (21%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR V + G L LL+ DI+C QETK+ +L + GY ++F
Sbjct: 7 LISWNVNGLRA-VMKKGFLELLLEQ-KFDIVCIQETKVSPDKLPREAKNIPGYYNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSGV F + K P+ E G G+E F
Sbjct: 65 E-----KNGYSGVGLFSKKK----------PLKLETGM-------------GIEKF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
D EGR + D F L N+Y P + R+++K+ F+ +G+R+
Sbjct: 93 ----DKEGRFLRADFEDFTLMNIYFPNGKA-SLERLEYKMSFYEAFLDYANSLKAEGKRL 147
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 229
+ GD+N A +D + + F R W L + D FR +PE
Sbjct: 148 VICGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFLA---AGYLDTFRMFNPEGGN- 203
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W TGA + N G R+D+ +
Sbjct: 204 YSWWSMRTGARKRNVGWRLDYFFVS 228
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 70/303 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F +ADI C QETKL+ +++ +L +GY
Sbjct: 1 MKLISWNVNGLRAAVQ-----KGFLDYFKNENADIFCVQETKLQEGQIELEL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P EV+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KKP---IEVSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + ++ F + VY P + E+ R+ +++ + + +
Sbjct: 86 ---------DKEGRVITLEYDDFYMITVYTPNS-QEELARLSYRMSWEDEFRNYVMKLDK 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + + GDLN+A ID R +AG F+ E R F +L F D FR
Sbjct: 136 LKPVIICGDLNVAHQEIDLKNPKSNRKNAG--FSDEE-RAKFTELL---KNGFVDSFRHF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+PE AY+ W A + N G RID+ + + + HN T + C +++
Sbjct: 190 YPELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHN-ETLGSDHCPVVLK 248
Query: 283 YKR 285
K+
Sbjct: 249 LKK 251
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 121/273 (44%), Gaps = 64/273 (23%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGYESFF 59
K+V++NVNGLR + + D+DI C QETKL+ + EL+ +L +GYE ++
Sbjct: 3 KLVSWNVNGLRACIGK--GFWDFFKEVDSDIFCIQETKLQEGQVELEQEL---EGYEQYW 57
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + GYSG A F ++K PV++ G G+E+
Sbjct: 58 NYAV-----KKGYSGTAIFTKIK----------PVSSSCGI-------------GIEEH- 88
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVL 168
D+EGR + + + L NVY P R ED RI K +
Sbjct: 89 -------DNEGRVITLEFDQYFLVNVYTPNSKRELERLEYRMKWEDDFRIYLK----QLE 137
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPE 225
+ + + + GD+N+A ID + + F + R S L+E G F D +R+ +P+
Sbjct: 138 ETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSELLEQG--FVDSYRTLYPD 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
+ AYT W A + N G RID+ C L
Sbjct: 196 KTGAYTWWSYMFKARERNVGWRIDY-FCVSEVL 227
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 137/324 (42%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQGRR--- 172
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + VL+ RR
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIENFVLKLRRAKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 135/328 (41%), Gaps = 97/328 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R V + + DADI C QETK++ +L +L +GY +++
Sbjct: 1 MKFISWNVNGIRACVQK--GFLEFFSQADADIFCIQETKMQEGQLSLEL---EGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P S V + EE
Sbjct: 56 YAV-----KKGYSGTAVFSKIE-PLS---VVYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVL-----QGRR 172
D EGR + ++ F VY P A +E R+ +++++ F + +
Sbjct: 86 ------DQEGRVITLEYEDFYFVTVYTPNAQNE-LARLDYRMKWEDDFRAWLKKLEENKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GD+N+A ID R AG D + +F + L+++G F D FR +P
Sbjct: 139 VVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKF-----TELLDAG--FIDTFRYFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++ Y+ W A + N G RID+ C CL D L+D
Sbjct: 192 DQEGIYSWWSYRFRAREKNAGWRIDY-FCVSECLK------------------DRLVD-- 230
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
G+ T + GSDH PV +
Sbjct: 231 -----------AGILTDIMGSDHCPVVL 247
>gi|282163799|ref|YP_003356184.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
gi|282156113|dbj|BAI61201.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
Length = 255
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 118/267 (44%), Gaps = 55/267 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++ +NVNGLR + + L DADI+C QETK +++ ++ GY F+S
Sbjct: 1 MRMLCWNVNGLRAVLKK--GFVDWLRREDADIVCIQETKAAAEQMPPEVTGIPGYH-FYS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
TS + GYSGVA F + + P + GF G+E
Sbjct: 58 ---TSPLEKKGYSGVALFTKEE----------PKSVSYGF-------------GIE---- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
K D EGR +I D+G F+L ++Y P R+ +K+ F+ +GR
Sbjct: 88 ----KYDIEGRTIIADYGKFVLLSIYFPNGKMSQE-RLDYKMGFYDAFLDYVDKLKAEGR 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ V GD+N A +D + K+ F R W E+ G F D FR +
Sbjct: 143 KVVVCGDVNTAHTELDIARPKENSKKSGFLPMEREWMDKF--EAHG-FIDTFRV-FEKAG 198
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W + T A + N G RID+ +
Sbjct: 199 GHYTYWDTFTKARERNVGWRIDYFYVS 225
>gi|169787480|gb|ACA80179.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|436837117|ref|YP_007322333.1| exodeoxyribonuclease III Xth [Fibrella aestuarina BUZ 2]
gi|384068530|emb|CCH01740.1| exodeoxyribonuclease III Xth [Fibrella aestuarina BUZ 2]
Length = 262
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 106/268 (39%), Gaps = 58/268 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++TYNVNG+R + L L D++CFQE K + L A GY +
Sbjct: 1 MRLLTYNVNGIRAAIKN--GLIDWLQQHPTDVLCFQEVKATHDVVDLALFEALGYTYHWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVATF + + ++ L
Sbjct: 59 AAE-----KKGYSGVATFSKRPADYAVLGCGLA--------------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR----- 172
D EGR + TD + N Y P + + V++QF +FF +Q R
Sbjct: 87 ----HYDCEGRILRTDFDDITVLNCYFPSGTTGELRQGVKMQFLAEFFDYVQDLRQSRPN 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ VVGD NIA D D P KN E R W F D FR+K+P+
Sbjct: 143 LIVVGDYNIAHTERDIHD--PARNKNTTGFLPEERAWMDRWF---ASGFVDAFRTKNPDA 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
E Y+ W GA N G RID+I A
Sbjct: 198 VE-YSWWSYRAGARANNKGWRIDYISVA 224
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 116/269 (43%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + R+ + DAD C QETK+ QE + DL +GY S+++
Sbjct: 1 MKLISWNVNGLRACCDK--GFREAFQTLDADFFCLQETKM--QEGQLDLSF-EGYTSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +K + + + V
Sbjct: 56 YAE-----KKGYSGTAIFTHLKPLNVTYGLGIDVH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + +F L VY P R D T F+ + + + +
Sbjct: 86 ------DHEGRVITLEMDNFYLVTVYTPNSQDGLKRLDYRMTWEDDFRNYLLELDKKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F+I L+++G F D FR +PE
Sbjct: 140 LVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQI-----LLDAG--FIDTFRYFYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ Y+ W A + N G RID+ L +
Sbjct: 193 QTGIYSWWSYRFKAREKNAGWRIDYFLAS 221
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 63/285 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLKAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEAFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYIKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
+AY+ W A N G RID+ + + + D + H+ V
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEV 237
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL +GY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL---EGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P + V + E
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDLEGIYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|169787414|gb|ACA80146.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|386853934|ref|YP_006203219.1| ExoA protein [Borrelia garinii BgVir]
gi|365193968|gb|AEW68866.1| ExoA [Borrelia garinii BgVir]
Length = 255
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVQEYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + + K P+A + G E F
Sbjct: 58 RSKIK-----GYSGVCIYSKAK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + +F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAYYDNFVLINGYFPNSQALRR-RLVYKLNFLSYVENLIDSLVNSGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F ++ + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFVV-------------NEFFKRNIKKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|224534803|ref|ZP_03675375.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
gi|224514051|gb|EEF84373.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
Length = 255
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L SDL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVREYTPDILCVQETKALREQLPSDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAYYSDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLVDSFVNGGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTKIDLI--SPDSNRDSPGYYIEETTWLDRFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNMGWRIDYFIV 221
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 120/271 (44%), Gaps = 64/271 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK V++NVNGLR + + +D F +ADI C QETKL+ + + + +GY +
Sbjct: 1 MKFVSWNVNGLRACLQ-----KGFMDYFKKVNADIFCIQETKLQPHQTGLEELNLEGYYA 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + YSG A F + K + + +P
Sbjct: 56 FWNFAE-----KKAYSGTAVFTKYKPLSVNYGIGIP------------------------ 86
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQG---- 170
+ D+EGR + ++ F L N Y P R + + R++++ F + L
Sbjct: 87 -------QHDNEGRVITLEYEKFYLVNTYTPNSQRGLTRLSYRMEWEEDFRNYLLKLDSV 139
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ I + GDLN+A ID R +AG F E +ML+ SG F D FR +
Sbjct: 140 KPIILCGDLNVAHKEIDIKNPSANRRNAG--FTDEEREK--MTMLLNSG--FIDTFRYFY 193
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P +++AYT W A + N G RID+ + +
Sbjct: 194 PHKKDAYTWWSYMRNAREKNIGWRIDYFIVS 224
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 137/324 (42%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVISF 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R R GYSGV T ++K P+ +G
Sbjct: 56 PAR-----RKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQGRR--- 172
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + VL+ R+
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIENFVLKLRKAKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|169787476|gb|ACA80177.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 116/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR V + LD F DADI C QETKL+ +++ +L +GY
Sbjct: 1 MKLVSWNVNGLRACVR-----KGFLDYFNEIDADIFCIQETKLQEGQIELEL---NGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P++ + G L S++
Sbjct: 53 YWNYAE-----KKGYSGTAVFTKFK----------PISVKYG----LSNEESQV------ 87
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQGRR 172
EGR + + +F L NVY P + D R+ +L++ HVL R
Sbjct: 88 -----------EGRILTLEFENFFLINVYTPNS-QRDLARLDVRLEWEDVLLEHVLAHDR 135
Query: 173 I---FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERRE 228
I + GDLN+A ID + ++ + F R + F D R HP+
Sbjct: 136 IKPVVLCGDLNVAHREIDIRNYKSNYGNSGFTDEEREKMTRFLNAGFIDTLRYFHPDTEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W + N G RID+ + +
Sbjct: 196 IYTWWSYMKTVRERNIGWRIDYFIVS 221
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 122/267 (45%), Gaps = 63/267 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++NVNGLR + + L+ ADI C QETK+++++ +GYE F++
Sbjct: 52 MRLVSWNVNGLRACMQK--GFCDFLEQSQADIFCVQETKMQQEQAS---FCFEGYEVFWN 106
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV T ++ P+ G G+ E
Sbjct: 107 SAQ-----KKGYSGVLTLSKIA----------PLQVSYG-IGIAEH-------------- 136
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D+EGR + ++ +F L NVY P A +R+ ++L++ +++Q +
Sbjct: 137 ------DTEGRVITCEYPNFYLVNVYTPNAQ-RGLLRLPYRLEWERSFRGFLQNLMQKKA 189
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG F+ E R FR +L D FR +P
Sbjct: 190 VVVCGDLNVAHNEIDLTNPQSNRYNAG--FSDPE-RDAFRQLL---NLGLIDTFRHFYPT 243
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHIL 252
+ E+YT W A N G RID+ L
Sbjct: 244 KAESYTWWSYINQARAKNIGWRIDYFL 270
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDNTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|320584151|gb|EFW98362.1| AP endonuclease [Ogataea parapolymorpha DL-1]
Length = 602
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 77/333 (23%)
Query: 1 MKIVTYNVNGLRQRVSQF-----GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY 55
+++VT+NVNG++ + F + ++L+ + D+I FQE K++R ++ + DGY
Sbjct: 16 LRLVTFNVNGIKTLKNYFPWTLVSNYSQMLNMMNIDVITFQELKVQRPDVDLSIADVDGY 75
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLL-------- 104
SF S + + GYSGV + R P + V EEG TG+L
Sbjct: 76 RSFISVPIS----KKGYSGVGVYVRKPRDDEPEILKKCLTVVRVEEGITGILPHQKKHVS 131
Query: 105 --ETSGSKIME-----GLEDFSK--DELLKIDSEGRCVITD-HGHFILFNVYGPRADSED 154
E +++ G D D+ K+DSEGRCVI + + + ++ +VY P
Sbjct: 132 FKEAYSDPVLQPTCIGGYPDHKNMYDKFRKLDSEGRCVIIELNFNIVVISVYCPANSLGT 191
Query: 155 TVRIQFKLQFFHVL---------QGRRIFVVGDLNIAPAAIDRCDA------------GP 193
+F+L F L G+++ V+GD+N+ ID D
Sbjct: 192 DEGEEFRLLFLRCLFERARNLRAMGKKVVVMGDINVCVDLIDSDDTIKQGFKERRLVKAQ 251
Query: 194 DFAKNE---------------FRIWFRSMLVESGGS--------FFDVFRSKHPERREAY 230
D++ E R + ++ G DV R K R + Y
Sbjct: 252 DYSDFETLNADQVLAFKHSAPHRELVNQYVKDTTGMRPDGDSHVLHDVVREKQGRRLKMY 311
Query: 231 TCWPSNTGAEQFNYGTRIDHILCA---GPCLHQ 260
T W + N G+RID IL + P + Q
Sbjct: 312 TVWSTFKSNRPLNVGSRIDLILASSQLAPLVSQ 344
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL +GY
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL---EGYFQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P + V + E
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDLEGVYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|169787330|gb|ACA80104.1| putative DNA lyase [Colletotrichum cereale]
gi|169787412|gb|ACA80145.1| putative DNA lyase [Colletotrichum cereale]
gi|169787430|gb|ACA80154.1| putative DNA lyase [Colletotrichum cereale]
gi|169787458|gb|ACA80168.1| putative DNA lyase [Colletotrichum cereale]
gi|169787470|gb|ACA80174.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787232|gb|ACA80055.1| putative DNA lyase [Colletotrichum cereale]
gi|169787440|gb|ACA80159.1| putative DNA lyase [Colletotrichum cereale]
gi|169787442|gb|ACA80160.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLGDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVMLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|399573824|gb|AFP49251.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 239
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G+ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWNVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLL-----ETSGSKIMEGLEDFS---KDEL------LKIDSE 129
P+ AEEG TG+L TS + E + +D+L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNTSTSFRDLPEAQQIGGYPRRDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ L G+++ + GDLN
Sbjct: 110 GRCVVIEFPAFVLIGTYSPA--TRDSSRDDFRLEYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRGEMDTCNV 178
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + ++ D D++C QETK++ +L D +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKK--DFEGIFEAMDTDVLCLQETKMQAGQLDYD---PEGYYAYYN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R+K P + T G+ E +
Sbjct: 56 YAE-----KKGYSGTAVYTRIK-PLNVT------------YGIQEDEHN----------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVL-QGRR 172
+EGR + ++ F L VY P + E RI +++Q + +L + +
Sbjct: 87 -------TEGRVITCEYDDFFLVCVYTPNSQPE-LKRIDYRMQWEDDFREYLKMLDETKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GDLN+A ID + P F+ E R F ++L F D FR HP
Sbjct: 139 VVLCGDLNVAHKEIDLKNPSANRKNPGFSDQE-REQFTNLL---DAGFIDSFRELHPNAI 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ Y+ W A N G RID+ + +
Sbjct: 195 DRYSWWSYRANARSRNIGWRIDYFVVS 221
>gi|50290925|ref|XP_447895.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527206|emb|CAG60844.1| unnamed protein product [Candida glabrata]
Length = 505
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 153/381 (40%), Gaps = 107/381 (28%)
Query: 1 MKIVTYNVNGLRQ--RVSQFG----SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ VT+NVNG+R + F SLR + D F++D+I FQE K L + DG
Sbjct: 12 IRFVTFNVNGVRTFFHYAPFSEMRQSLRSVFDWFESDVITFQELKTEPLSL-NKWGKVDG 70
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSKIME 113
+ SF S + R GYSGV + R+ S AL V AEEG TG LE K
Sbjct: 71 FYSFISIPQK----RKGYSGVGCWVRIPPRDSPKYNALQVLRAEEGITGYLEVKNGKQSV 126
Query: 114 GLED------------------FSKDELLKIDSEGRCVITD-HGHFILFNVYGPR----A 150
D S + L++DSEGRCVI + ++ +VY P
Sbjct: 127 SYRDDSEIGIGGYIPDDSLPDHISTSDALQLDSEGRCVIVELKCGIVVISVYCPANSTCT 186
Query: 151 DSEDTVRIQF-KLQFFHV----LQGRRIFVVGDLNIAPAAIDRCDAGPDF---------- 195
D + R+++ KL F + + G+ + ++GDLNI ID + ++
Sbjct: 187 DEGEVFRMRYLKLLFARIRNLQMMGKMVVLMGDLNICRDLIDHAVSLEEYHISIGNESTG 246
Query: 196 --AKNEFR--------------------IWFRSMLVESGGSF--FDVFRS-KHPERREAY 230
E+R I SM+ + F D R + +R + Y
Sbjct: 247 TQIDEEYRDFAIKFIVNPEVPHRLLLNQILDDSMVPNTDNEFCLIDTTRKVQGRDRLKMY 306
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
T W + N+G+RID IL + DL + ++ + DIL D
Sbjct: 307 TVWNTLKNTRPSNFGSRIDFILVS-------KDLGN------NIEKADILPD-------- 345
Query: 291 APRWKGGMSTRLEGSDHAPVY 311
+ GSDH PV+
Sbjct: 346 -----------INGSDHCPVF 355
>gi|398341999|ref|ZP_10526702.1| exodeoxyribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 254
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 58/267 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++ N NG+R ++ L LL S D +CFQETK + +L +++ GY+++F
Sbjct: 1 MKLICLNCNGIRSAWTK--GLGDLLSSERPDFVCFQETKAQSDQLSAEIWEKLGYKAYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + K P ++ + EE
Sbjct: 59 SAE-----KKGYSGVSLWAK-KEP---KKITYGIGVEE---------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D EGR V+ D+G F ++ VY P + D +R K++F
Sbjct: 88 -----FDKEGRSVLADYGDFAIWTVYFPSGTTGD-IRQAAKMRFLDEFLKLSKKLRKKHP 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD+NIA D D + AKN E R W L +SG + D FR +PE+
Sbjct: 142 NLILCGDVNIAHTEKDIHDPKGN-AKNSGFLPEERAWLTEFL-KSG--WIDSFRELYPEK 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILC 253
+E Y+ W GA N G RID+
Sbjct: 198 QE-YSWWTFRAGARGNNKGWRIDYFFV 223
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 123/281 (43%), Gaps = 70/281 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYE-SF 58
+K++++NVNGLR + G S +L + D++CFQETKL+ A GYE SF
Sbjct: 237 VKLMSWNVNGLRALLKLEGFSAVELAQRENFDVLCFQETKLQ----------AKGYENSF 286
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++C+ + + GYSG A RVK P++ G G+ D
Sbjct: 287 WTCSHS----KLGYSGTAIVSRVK----------PLSVSYGL-------------GIADH 319
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQ 169
DSEGR V + F L N Y P + + R+ +++ + + +
Sbjct: 320 --------DSEGRLVTAEFDSFYLLNAYVPNS-GDGLKRLSYRVSQWDLSLSNYMKELEK 370
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + + GDLN A ID R +AG +E R F + + G F D FR +
Sbjct: 371 SKPVILNGDLNCAHQEIDIYNPAGNRRNAG---FTDEERQSFETNFLSRG--FVDSFRKQ 425
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
HP+ YT W G + N G R+D+ L + Q HD
Sbjct: 426 HPDVV-GYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHD 465
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 113/263 (42%), Gaps = 49/263 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G + DADII QETK + ++ ++ ++ GY +F
Sbjct: 75 LKICTWNVSGIRAVIKKNG--LDYIAKEDADIIALQETKCGKDKMPDEIKLS-GYHHYFL 131
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D ++GY GVA FC+ K PV+ + G
Sbjct: 132 -----DSKQSGYCGVALFCKEK----------PVSVKYGLNNS----------------- 159
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
DSEGR + + F + NVY P A + V + +L++ + Q +
Sbjct: 160 ----NFDSEGRIIAAEFPEFFMVNVYVPNA-GQKLVTLPKRLEWNKIFKKYIEELDQKKP 214
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ + GD+N+A ID + + F R + + F D FR +P++ AYT
Sbjct: 215 VIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLAAGFIDTFRLLYPDKEGAYT 274
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + G R+D+ L +
Sbjct: 275 FWSYFANARNKDIGWRLDYFLAS 297
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 141/329 (42%), Gaps = 97/329 (29%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + +L +ADI C QE+KL+ ++ +L +GY +++
Sbjct: 3 KLISWNVNGLRACVKK--GFIDILKESNADIFCVQESKLQEGQIDLNL---EGYYDYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + K P + ++L + EE
Sbjct: 58 AE-----KKGYSGTAVFSKEK-PLN---ISLGIGIEEH---------------------- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH--------VLQGRRI 173
D EGR + + F L NVY P + + RI +++ + + + + + +
Sbjct: 87 -----DKEGRVLTLEFEEFYLVNVYTPNS-QQKLARIDYRMAWENDFRSYLNELNKAKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F L++SG F D +R +P+
Sbjct: 141 IVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKF-----GELLKSG--FIDTYRYFYPD 193
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
+ AY+ W A N G RID+ L + D + D L+D K
Sbjct: 194 KEGAYSWWSYRFNARANNAGWRIDYFLVS-------KDFE------------DRLVDAK- 233
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ T++EGSDH PV + +
Sbjct: 234 ------------IHTQIEGSDHCPVELII 250
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 119/267 (44%), Gaps = 59/267 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + ++ D D++C QETK++ +L D +GY ++++
Sbjct: 2 MKLISWNVNGLRAVMKK--DFEGIFEAMDTDVLCLQETKMQAGQLDYD---PEGYYAYYN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R+K P + T G+ E +
Sbjct: 57 YAE-----KKGYSGTAVYTRIK-PLNVT------------YGIQEDEHN----------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVL-QGRR 172
+EGR + ++ F L VY P + E RI +++Q + +L + +
Sbjct: 88 -------TEGRVITCEYDDFFLVCVYTPNSQPE-LKRIDYRMQWEDDFREYLKMLDETKP 139
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GDLN+A ID + P F+ E R F ++L F D FR HP
Sbjct: 140 VVLCGDLNVAHKEIDLKNPSANRKNPGFSDQE-REQFTNLL---DAGFIDSFRELHPNAI 195
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ Y+ W A N G RID+ + +
Sbjct: 196 DRYSWWSYRANARSRNTGWRIDYFVVS 222
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 124/268 (46%), Gaps = 60/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVSLQL---EGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQ----GRRI 173
D EGR + + H + N Y P A R+Q++ F LQ + +
Sbjct: 87 ------DQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQKLDRKKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P++
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDQ 194
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|410679307|ref|YP_006931709.1| exodeoxyribonuclease III [Borrelia afzelii HLJ01]
gi|408536695|gb|AFU74826.1| exodeoxyribonuclease III [Borrelia afzelii HLJ01]
Length = 255
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRSVLKK--GFLEFVREYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAHYEDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSFVNDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
I + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NIIICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNIGWRIDYFIV 221
>gi|169787288|gb|ACA80083.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 36/190 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCD 190
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIH 234
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 122/278 (43%), Gaps = 55/278 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + +AD+ C QE KL+ +++ DL GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKK--GFMDFFTEVNADVFCLQEIKLQEGQIEMDL---PGYYTYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K PVA + G GLE+
Sbjct: 56 YAH-----KKGYSGTAIFTKQK----------PVAVQYGL-------------GLEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
+D+EGR + + + + VY P + +R+ ++L F L +
Sbjct: 85 -----LDTEGRIITLEFDSYYVITVYTPNS-QHGLLRLDYRLLWEEAILSFVKTLDNHKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERREA 229
+ + GDLN+A ID + + + F RS + +ESG F D FR +PE
Sbjct: 139 VLLCGDLNVAHEEIDLKNPKANKKNSGFTPEERSKMTQFLESG--FVDTFRYFYPEEEGH 196
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
Y+ W + + N G RID+ L + + + + + H
Sbjct: 197 YSWWSYRSNCREKNVGWRIDYFLASQRLVPELQNAKIH 234
>gi|399573820|gb|AFP49249.1| DNA lyase, partial [Colletotrichum caudatum]
gi|399573822|gb|AFP49250.1| DNA lyase, partial [Colletotrichum caudatum]
Length = 233
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L ++V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDEMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L++ + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 119/273 (43%), Gaps = 69/273 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF +AD+ C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELNADVFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQGRR- 172
+ D+EGR + + L VY P RA R+ ++ F L R
Sbjct: 84 EH--------DNEGRVITMELPDVYLVTVYTPNAKRALERLDYRMAWEDSFRAFLLDLRA 135
Query: 173 ---IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ V GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 136 KKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRAL 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAG 255
+P+R AYT W A + N G RID+ L +
Sbjct: 190 YPDRTGAYTWWSYLRHARETNAGWRIDYFLVSA 222
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 119/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F DADI C QETKL+ ++ DL E
Sbjct: 1 MKLISWNVNGLRACVK-----KGFLDYFKSEDADIFCLQETKLQEGQIDLDL------EG 49
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+F ++K GYSG A F + K P + V + E
Sbjct: 50 YFQYWNYAEK--KGYSGTAIFTK-KEPLN---VYYGINMEHH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F + VY P + SE R+++++++ +
Sbjct: 86 ---------DKEGRVITLEFEDFFMVTVYTPNSQSE-LARLEYRMEWEDDFRNYLLELSS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GDLN+A ID R +AG D +++F S L+ SG F D FR
Sbjct: 136 KKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKF-----STLLSSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 189 FNPDLEGVYSWWSYRFNARKNNAGWRIDYFLVS 221
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 112/262 (42%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G + DADII QETK + ++ D V GY +F
Sbjct: 104 LKICTWNVSGIRAVIKKHG--LDYITKEDADIIALQETKCDKGKM-PDEVKLPGYHHYF- 159
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY GVA F + K P++ + GL D +
Sbjct: 160 ----LDSKKPGYCGVALFSKEK----------PIS---------------VKYGLNDST- 189
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQ----FKLQFFHVLQGRRI 173
D+EGR + + F + NVY P A + R++ FK + Q + +
Sbjct: 190 -----FDTEGRIITVEFPEFFVINVYVPNAGQKLVTLPKRLEWNKLFKKHIEELDQKKPV 244
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
+ GD+N+A ID + + F R+ + + F D FRS +PE AYT
Sbjct: 245 IICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFLAAGFIDTFRSLYPEIEGAYTF 304
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ L +
Sbjct: 305 WSYFANARSKNIGWRLDYFLIS 326
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 121/269 (44%), Gaps = 60/269 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R V Q G L + S AD+IC QETK + +++ +V GY ++++
Sbjct: 1 MKLVSWNVNGVRA-VLQKGLLDYIAAS-GADVICLQETKCQPGDVQH-VVWPAGYRAWWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG A F RV+ PVA G GL D
Sbjct: 58 AAQ-----KKGYSGTAIFSRVE----------PVAVSCGL-------------GLPDH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRRI 173
D+EGR + + F L NVY P A E VR+ ++ L + L+ ++
Sbjct: 88 ------DNEGRVLTAEFADFYLVNVYVPNAQHE-LVRLPYRRRWNADFLSYLRSLEKKKP 140
Query: 174 FVV-GDLNIAPAAIDRC----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFR--SKHPER 226
VV GD+N+A ID + G NE R F +ML F D FR K P
Sbjct: 141 VVVCGDMNVAHQEIDLARPKENVGNAGFSNEEREDFSTML---RAGFVDTFREFEKGPGH 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAG 255
Y+ W GA N G RID+ L +
Sbjct: 198 ---YSWWTYRAGARGRNIGWRIDYFLASA 223
>gi|169787478|gb|ACA80178.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|111115360|ref|YP_709978.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|216263647|ref|ZP_03435642.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
gi|384207022|ref|YP_005592744.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|110890634|gb|ABH01802.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|215980491|gb|EEC21312.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
gi|342856906|gb|AEL69754.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
Length = 255
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK +++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVREYTPDILCVQETKALKEQLPRDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +VK P+A + G E F
Sbjct: 58 KSKIK-----GYSGVCIYSKVK----------PIAVN--------------LLGKEIF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR +I + F+L N Y P + + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLIAHYEDFVLINGYFPNSQALRR-RLVYKLDFLSYVENLIDSFVNDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
I + GD NIA ID PD ++ E W S L + F +F +K P
Sbjct: 140 NIIICGDFNIAHTEIDLI--SPDSNRDSPGYYIEETTWLDSFLNKGYVDTFRIF-NKEP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILC 253
YT W T A + N G RID+ +
Sbjct: 196 --GYYTWWSYRTRAREKNIGWRIDYFIV 221
>gi|169787332|gb|ACA80105.1| putative DNA lyase [Colletotrichum cereale]
gi|169787334|gb|ACA80106.1| putative DNA lyase [Colletotrichum cereale]
gi|169787336|gb|ACA80107.1| putative DNA lyase [Colletotrichum cereale]
gi|169787338|gb|ACA80108.1| putative DNA lyase [Colletotrichum cereale]
gi|169787340|gb|ACA80109.1| putative DNA lyase [Colletotrichum cereale]
gi|169787342|gb|ACA80110.1| putative DNA lyase [Colletotrichum cereale]
gi|169787344|gb|ACA80111.1| putative DNA lyase [Colletotrichum cereale]
gi|169787352|gb|ACA80115.1| putative DNA lyase [Colletotrichum cereale]
gi|169787410|gb|ACA80144.1| putative DNA lyase [Colletotrichum cereale]
gi|169787416|gb|ACA80147.1| putative DNA lyase [Colletotrichum cereale]
gi|169787418|gb|ACA80148.1| putative DNA lyase [Colletotrichum cereale]
gi|169787438|gb|ACA80158.1| putative DNA lyase [Colletotrichum cereale]
gi|169787444|gb|ACA80161.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|169787228|gb|ACA80053.1| putative DNA lyase [Glomerella tucumanensis]
gi|169787280|gb|ACA80079.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 36/190 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCD 190
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|169787346|gb|ACA80112.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEXQQIGGYPRPDQLPGELDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 62/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M +T+NVNG+R + + + ++ +AD QET++ E+K DL +D Y+ +
Sbjct: 28 MNFITWNVNGIRAILK--NNFYEFFNAANADFFSVQETRVSPGEVKLDLP-SDYYQYW-- 82
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+D R GY+G A F + P K+M GL+
Sbjct: 83 ----NDAERPGYAGTAVFTK-HQPL------------------------KVMLGLD--GN 111
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D+ D EGR + ++ +F L NVY P A E+ R+ FK + F L+ +
Sbjct: 112 DQ----DPEGRAITLEYPNFYLVNVYAPAA-GEELQRLTFKEEWDQKLITFVDKLKATKP 166
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLNIA ID R AG A+ + + L++SG F D++R+ HP+
Sbjct: 167 VIINGDLNIAHEPIDIYAPEEHRHAAGFTDAERQQM----TQLLDSG--FTDIYRATHPD 220
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W A + N+G R+D+ + +
Sbjct: 221 EPNKYTWWSYRDHARRDNHGWRLDYFIIS 249
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + +D F DADI C QE+K++ +L+ +L GY
Sbjct: 12 MKMISWNVNGIRACVG-----KNFMDFFKEADADIFCIQESKMQEGQLQLEL---PGYYQ 63
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S VA + EE
Sbjct: 64 YWNYAE-----KKGYSGTAIFAK-KEPLS---VAYGIGIEEH------------------ 96
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + ++ +F + VY P + +E R+ +++++ + Q
Sbjct: 97 ---------DHEGRVITLEYDNFYMVTVYTPNSQNE-LARLDYRMKWEDDFREYLKQLEQ 146
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + V GD+N+A ID R +AG D + +F S L++SG F D FR
Sbjct: 147 TKPVVVCGDMNVAHTEIDLKNPKTNRKNAGFTDEEREKF-----STLLDSG--FVDTFRF 199
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ Y+ W A + N G RID+ L +
Sbjct: 200 FNPDAEGIYSWWSYRFKAREKNAGWRIDYFLTS 232
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 137/324 (42%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQGRR--- 172
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + VL+ R+
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIENFVLKLRKAKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 120/267 (44%), Gaps = 65/267 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ + DADI C QETKL QE + DL +GYES+++
Sbjct: 1 MKFISWNVNGLRACVTK--GFMDFFNEVDADIFCLQETKL--QEGQIDL-NPEGYESYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S VA + +E
Sbjct: 56 YA-----DKKGYSGTAIFTK-KKPLS---VAYGIGIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + F VY P + +E R++++++ + L ++
Sbjct: 86 ------DHEGRVITLEFEDFYFVTVYTPNSQTE-LKRLEYRMRWEDDFRAYLKNLDSKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D +N+F + +ESG F D FR +P
Sbjct: 139 VVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKF-----TEFLESG--FIDTFRYFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHI 251
+ Y+ W A + N G RID+
Sbjct: 192 DAEGMYSWWSYRFNARKNNAGWRIDYF 218
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 120/268 (44%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F +AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVNADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S V+ V E
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLS---VSYGVGKES------------------- 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
+ EGR + + + NVY P + D R++ +LQ + L
Sbjct: 85 ---------EDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKKLNS 134
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
R+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQ 192
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W + N G RID+ + +
Sbjct: 193 EGAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|169787284|gb|ACA80081.1| putative DNA lyase [Glomerella graminicola]
Length = 233
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L+ D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLRDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NAKCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFQAFVLIGTYSPAM--RDSSRDDFRLGYLNALDARVRNLVAAGKQVVLTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIREEMDTCNV 178
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 133/323 (41%), Gaps = 79/323 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + ++ + DAD C QETKL+ +++ D GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--GFVEIFEELDADFFCLQETKLQEGQIELDF---PGYYDYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K S + P +EG L ++ SK
Sbjct: 56 YAE-----KKGYSGTAIFTKHKPLDVSYGIGKPEHDQEGRVITLSYPNYYVVTCYTPNSK 110
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLN 180
EL ++D R D F +Y + DSE + + + GDLN
Sbjct: 111 SELKRLDY--RMQWEDD-----FQLYLKKLDSE-----------------KPVILCGDLN 146
Query: 181 IAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233
+A ID + AG F+K E R+ F S L+++G F D FR +P+ AYT W
Sbjct: 147 VAHENIDLKNWKTNQLSAG--FSKEE-RMKF-SALLDAG--FIDTFRYFYPDLEGAYTWW 200
Query: 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPR 293
A + N G RID+ C L H+ E IL D
Sbjct: 201 NYRFNARKTNAGWRIDY-FCVSTRLQD------------HLQEARILDD----------- 236
Query: 294 WKGGMSTRLEGSDHAPVYMCLGE 316
+ GSDH PV + L E
Sbjct: 237 --------IVGSDHCPVELILKE 251
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 123/265 (46%), Gaps = 55/265 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVN L+ RV + L L+ D D IC QETKL ++ ++ Y+ FF+
Sbjct: 48 LKFLSWNVNSLK-RVLERKQLVNLVSQEDPDFICLQETKLTEDKVPGAFLLPQ-YKKFFN 105
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C T + GYSG A F ++ P+A + F G+
Sbjct: 106 CCET----KRGYSGTALFSKMA----------PIAVLKDFEGVYSEH------------- 138
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR-IQFKLQ--------FFHVLQGR 171
+ GR ++ ++ +F + +VY P +S D ++ +++++ + LQ +
Sbjct: 139 ------NKTGRLIVAEYENFYVASVYVP--NSGDKLKNLEYRVHSWDPSFCSYICELQMK 190
Query: 172 R-IFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ I ++GDLN+A ID R + F ++E R F L E+ D FR +P
Sbjct: 191 KPIVLLGDLNVAHQDIDVYAPERLGSKAGFVQSE-RNNFSKFLEET--KMVDSFRYLYPH 247
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDH 250
R+EAY+ W TG N G RID+
Sbjct: 248 RKEAYSFWDYKTGGRLRNQGWRIDY 272
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 120/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + +S DADI C QETKL+ ++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFESVDADIFCLQETKLQAGQIDLDLPEYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P++ G
Sbjct: 57 ------AVKKGYSGTAIFTKIE----------PISVRYGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
++ + D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 81 -DIPEHDTEGRVITLEFEKFFMITVYTPNSQAE-LKRLDYRMTFEDAILTYVKKLDETKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L E+G F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFTTFL-EAG--FVDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A N G RID+ + +
Sbjct: 193 LEGAYSWWSYRMNARAQNTGWRIDYFVVS 221
>gi|169787448|gb|ACA80163.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 137/335 (40%), Gaps = 92/335 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V+ + LD F DADI C QETKL QE + DL + + YE
Sbjct: 1 MKLISWNVNGLRACVN-----KGFLDYFREMDADIFCVQETKL--QEGQIDLDLGEEYEQ 53
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S + G+E+
Sbjct: 54 YWNYAL-----KKGYSGTAVFTK-KKPLS------------------------VRYGIEE 83
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSE---------DTVRIQFKLQFFHVL 168
+ EGR + + F L NVY P + + R +F LQ
Sbjct: 84 -------NEEPEGRILTLEFESFFLVNVYTPNSKRDLSRLEERLEWEERFRFYLQKLDAC 136
Query: 169 QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERR 227
+ + V GDLN+A ID ++ + + F R M + F D FR +P++
Sbjct: 137 --KPVIVCGDLNVAHQVIDLKNSKSNHGNSGFTTEEREKMTILQDAGFTDTFRHFYPDQT 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
+AYT W + N G RID+ L + D L+D +
Sbjct: 195 DAYTWWSYMPKVRERNIGWRIDYFLVSSRLR-------------------DFLVDAR--- 232
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQ 322
+ + + GSDH P+++ + + + PQ
Sbjct: 233 ----------IDSNILGSDHCPIHLIMNDC-DTPQ 256
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 132/324 (40%), Gaps = 83/324 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + DI C QETKL QE + DL + GY +++
Sbjct: 1 MKLISWNVNGLRACLKK--GFLEYFNEVSGDIFCVQETKL--QEGQIDLELP-GYFQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +++ P+ + G I E
Sbjct: 56 YAE-----KKGYSGTAIFTKIQ----------PLTVQYG-----------IGEA------ 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
K D EGR + + + L NVY P + E R+ ++LQ+ + +
Sbjct: 84 ----KHDKEGRVITLEFCDYYLVNVYTPNSQRE-LARLDYRLQWEDAFKNYLVNLDSEKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ V GDLN+A ID + + F R+ L E F D FR +P+ AYT
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTELLNAGFIDTFRYFYPDTEGAYT 198
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W T A + N G RID+ L + QK D N++T DI+
Sbjct: 199 WWSYITKARERNAGWRIDYFLAS-----QKLD----NWLTDAEIHADIM----------- 238
Query: 292 PRWKGGMSTRLEGSDHAPVYMCLG 315
GSDH PV + L
Sbjct: 239 ------------GSDHCPVALKLA 250
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 60/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLMSWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ G G++D
Sbjct: 57 YAV-----KKGYSGTAVFSKEK----------PLHVLYGL-------------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQG----RRI 173
D EGR + + H + N Y P A R+Q++ F LQ + +
Sbjct: 87 ------DQEGRVITLEFEHVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQKLDRKKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDR 194
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 6 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 61
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 62 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 90
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 91 ------DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 143
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 144 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 197
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 198 LTDAYSWWSYRMNARARNTGWRIDYFVVS 226
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
Length = 254
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 127/327 (38%), Gaps = 88/327 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+ ++NVNG+R ++ L D++ QE K +L L +GY FF+
Sbjct: 1 MKLYSWNVNGIR--AAEKKGFVDWLQREQPDVLGIQELKAEPDQLSDALKDVEGYHVFFN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A + + + P +I+ GL D
Sbjct: 59 PAE-----RKGYSGTAVYYK-REP------------------------KRILTGLSD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------HVLQGR 171
+ + EGR +I ++ F L+N+Y P D R+QFK+ F+ V +G
Sbjct: 86 ---ERFNHEGRTIILEYPDFTLYNIYFPNGSQSDE-RLQFKMDFYDGFWHDVDERVARGE 141
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
++ + GD+N A ID + + ++ F R W G + D +R +PE +
Sbjct: 142 KVIICGDVNTAHREIDLKNPKSNAKRSGFLPIEREWMDHFF---AGGYIDTYRYFYPE-Q 197
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
Y+ W A + N G RID+ + N D+L D
Sbjct: 198 VTYSWWSYRFNARKNNAGWRIDYFFASD-------------------NAKDLLAD----- 233
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ T + GSDH P+ + L
Sbjct: 234 --------AAIHTDVTGSDHCPISLTL 252
>gi|323334754|gb|EGA76127.1| Apn2p [Saccharomyces cerevisiae AWRI796]
Length = 330
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 106/229 (46%), Gaps = 38/229 (16%)
Query: 1 MKIVTYNVNGLR-----QRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADG 54
++ +T+NVNG+R Q SQ SLR + D F ADII FQE K + + S DG
Sbjct: 11 IRFLTFNVNGIRTFFHYQPFSQMNQSLRSVFDFFRADIITFQELKTEKLSI-SKWGRVDG 69
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA-AEEGFTGLLETSGSK--- 110
+ SF S + R GYSGV + R+ AL V AEEG TG L K
Sbjct: 70 FYSFISIP----QNRKGYSGVGCWIRIPEKNHPLYHALQVVKAEEGITGYLTIKNGKHSA 125
Query: 111 ------IMEGL-------EDFSKDELLKIDSEGRCVITDHG-HFILFNVYGPRADSEDTV 156
+ +G+ D + L++DSEGRCV+ + ++ +VY P +
Sbjct: 126 ISYRNDVNQGIGGYDSLDPDLDEKSALELDSEGRCVMVELACGIVIISVYCPANSNSSEE 185
Query: 157 RIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAGPDFA 196
F+++F VL G++I ++GD+N+ ID D F+
Sbjct: 186 GELFRIRFLKVLLRRVRNLDKIGKKIVLMGDVNVCRDLIDSADTLEQFS 234
>gi|114330240|ref|YP_746462.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307254|gb|ABI58497.1| Exodeoxyribonuclease III [Nitrosomonas eutropha C91]
Length = 254
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 137/331 (41%), Gaps = 93/331 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVN L+ R+ Q + L+ D++C QETKL+ + D + GY+S ++
Sbjct: 1 MKIATWNVNSLKVRLQQ---VIDWLNVNQPDVLCLQETKLQDEFFPVDELAQAGYQSIYA 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA +V +G + L DF
Sbjct: 58 -------GQKTYNGVALLSKV-------------------------TGVDVCAALPDFD- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL-----QGR---- 171
D + R + +G + VY P + D+ + +KL++ +L Q R
Sbjct: 85 ------DPQKRLIAATYGDLRIICVYVPNGERVDSEKYAYKLRWLSILNSFLQQERTRYG 138
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF------RIWFRSMLVESGGSFFDVFRSKHPE 225
++ ++GD NIAP DR P+ K + R FR +L F +F + PE
Sbjct: 139 KVALLGDFNIAPE--DRDVYDPEAWKGQVLCSEAERQAFRGLLDTGFVDSFHLF--EQPE 194
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
+ YT W A + N G RIDHIL + H+ D +C
Sbjct: 195 K--IYTWWDYRMMAFRRNRGLRIDHILLS----HETAD-------SCAT----------- 230
Query: 286 WKPGNAPRWKGGMSTRLE-GSDHAPVYMCLG 315
W+ APR +LE SDHAPV++ L
Sbjct: 231 WQVDKAPR-------KLERPSDHAPVWVELA 254
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 123/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + D+DI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDSDIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MRLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GIPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDNTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+AY+ W A N G RID+ + + + D + H
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH 234
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/268 (29%), Positives = 121/268 (45%), Gaps = 62/268 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F AD+ C QETKL QE + DL + +GY
Sbjct: 1 MKLISWNVNGIRACVR-----KGFLDYFQEVTADVFCIQETKL--QEGQIDLQL-EGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + K P S +
Sbjct: 53 YWNYAV-----KKGYSGTAVFTKQK-PLSVS----------------------------- 77
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
F D+ +++ EGR + + + NVY P + D R++ +LQ + L
Sbjct: 78 FGVDK--ELEDEGRIITLEFEQCYVVNVYTPNS-KRDLARLEERLQWEDDLLVYLKKLNS 134
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
R+ + + GDLN+A A ID + P+ + F I R + L+ SG F D FR +P +
Sbjct: 135 RKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASG--FLDTFRYLYPNQ 192
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W + N G RID+ + +
Sbjct: 193 EGAYTWWSYMNKVRERNIGWRIDYFIVS 220
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 135/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L+ESG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P+ AY+ W A + N G RID+ + + D + H
Sbjct: 189 FYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ EGSDH PV + L
Sbjct: 235 ------------------AQTEGSDHCPVVLFL 249
>gi|335042075|ref|ZP_08535102.1| exonuclease III [Methylophaga aminisulfidivorans MP]
gi|333788689|gb|EGL54571.1| exonuclease III [Methylophaga aminisulfidivorans MP]
Length = 259
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 118/268 (44%), Gaps = 54/268 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I+T NVNG+R + L +AD++C QETK + +L+ D+ GY ++
Sbjct: 1 MRIITANVNGIRAAARK--GFFDWLPKQNADVVCIQETKAQVHQLEDDIFRPQGYHCYY- 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GYSGVA +C+ + EV + + EE
Sbjct: 58 ----HDAEKKGYSGVALYCKAE----PDEVIVGMGNEE---------------------- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRI-QFK-LQFF-HVLQ-----GRR 172
D+EGR + G+ + ++Y P S++ +I +++ + FF + +Q GR
Sbjct: 88 -----FDAEGRYIEARFGNLSVISLYMPSGSSKEERQIAKYRCMDFFENKMQDMKDSGRD 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD NIA D + + + F R W + E G F D FR + P+
Sbjct: 143 VLICGDWNIAHKNEDIRNWKGNLKNSGFLPEERAWLDKLFDEMG--FIDAFR-ELPQEEH 199
Query: 229 AYTCWPSNTGAEQFNYGTRID-HILCAG 255
YT W + A N G RID HIL G
Sbjct: 200 QYTWWSNRGQARANNVGWRIDYHILTPG 227
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 137/324 (42%), Gaps = 95/324 (29%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V Q G L ++ DADI C QE+KL+ +++ L +GY +++
Sbjct: 4 KMISWNVNGLRACV-QKGFLEYFKEA-DADIFCIQESKLQEGQIELPL---EGYHQYWNY 58
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ + GYSG A F + + P S V+ + EE
Sbjct: 59 AK-----KKGYSGTAVFSK-EEPLS---VSYGIGIEEH---------------------- 87
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG----RRIF 174
D EGR + + + L VY P + +E R+ ++ F L+G + +
Sbjct: 88 -----DQEGRVITLEFDTYYLVTVYTPNSQNELARLPYRMTWEEAFLAYLKGLEKNKPVI 142
Query: 175 VVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
GDLN+A ID R +AG D + +F S ++E+G F D +R +PE+
Sbjct: 143 FCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKF-----SQILENG--FIDTYRYFYPEQ 195
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
Y+ W A + N G RID+ C CL D L+D +
Sbjct: 196 EGVYSWWSYRFRAREKNAGWRIDY-FCVSECLK------------------DRLVDAR-- 234
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPV 310
+ T + GSDH PV
Sbjct: 235 -----------IHTEITGSDHCPV 247
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 114/263 (43%), Gaps = 49/263 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV GLR + + G +L+D + DI C QETK +L ++ GY ++
Sbjct: 1 LKICSWNVAGLRAWLKKDGL--QLIDLEEPDIFCLQETKCANDQLPEEVTRIPGYHPYWL 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C GY+GVA + ++ +P+ E G G E+F
Sbjct: 59 CMPG------GYAGVAIYSKI----------MPIHVEYGI-------------GNEEF-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D GR + ++ F L NVY P + V ++ ++++ + Q +
Sbjct: 88 ------DDVGRMITAEYEKFYLINVYVPNS-GRKLVNLEPRMRWEKLFQAYVKKLDALKP 140
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYT 231
+ + GD+N++ ID + + F R + E G F D FR +P+R+ AYT
Sbjct: 141 VVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGFVDTFRHLYPDRKGAYT 200
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ L +
Sbjct: 201 FWTYMANARARNVGWRLDYCLVS 223
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 123/269 (45%), Gaps = 62/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + L ADI+C QETK++ ++ + +GY +++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTCLQETKADILCLQETKVQDGQVS---LQPEGYHDYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P+ G G++D
Sbjct: 57 YAV-----KKGYSGTAVFSKVK----------PLQVSYGL-------------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVL-QGRR 172
D EGR + + + + N Y P A RI ++LQ + L Q +
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNA-KRGLERIDYRLQWEADFKDYLQKLDQKKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E + S+L+ +G F D FR +P+
Sbjct: 140 VILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SVLLNAG--FTDSFRYLYPD 193
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ AY+ W T A + N G R+D+++ +
Sbjct: 194 QEGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 116/272 (42%), Gaps = 48/272 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNGLR + + S ++ DADI+ QETKL+ +++ DL GY +S
Sbjct: 9 LKLASWNVNGLRAVLKKDPSFTDIVSELDADILGLQETKLQEGQVEIDL---PGYHQVWS 65
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F R P S +AA GL D
Sbjct: 66 YAE-----RKGYSGTAVFTR-DEPLSVRHADAVLAAGRA-------------AGLTDDQL 106
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ---G 170
+ + +EGR + F +VY P A E R+ ++ F L+ G
Sbjct: 107 ELVAVAATEGRVCALEFERFWFVDVYTPNAQGE-LARLDTRMAWDDAYRAFLLSLEDETG 165
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSK 222
+ + GD N+A ID R +AG F+ E RS VE + D FR+
Sbjct: 166 KPVVTCGDFNVAHNEIDLKNPKSNRGNAG--FSDEE-----RSKFVELLDAGYTDTFRAA 218
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ AY+ W A + N G RID+ L +
Sbjct: 219 NPDLEGAYSWWSYRFNARKNNAGWRIDYFLVS 250
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M++V++NVNGLR + + + L ADI C QETK+ Q ++D V + Y +F++
Sbjct: 1 MRLVSWNVNGLRACMQK--GFKDFLLKSGADIFCVQETKM--QPDQADFVF-ENYHAFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV T + + P+ G GLE+
Sbjct: 56 SAQ-----KKGYSGVLTLSK----------SAPLDVRYGL-------------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG----RR 172
D+EGR + ++ +F L NVY P + +R+ ++LQ F LQ +
Sbjct: 86 ------DTEGRVITCEYEYFYLVNVYTPNS-QRGLLRLPYRLQWESVFREFLQNLASHKE 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D +N F L++ G D +R +P
Sbjct: 139 VLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAF-----GQLLQLG--LIDTYRHFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ E YT W + N G RID+ L +
Sbjct: 192 DKTEVYTWWSYMNQSRARNIGWRIDYFLAS 221
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 118/265 (44%), Gaps = 65/265 (24%)
Query: 8 VNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDK 67
+NGLR +++ +S DAD+ C QE+K+++++ + GY F++C
Sbjct: 1 MNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWNCAI---- 51
Query: 68 GRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKID 127
+ GYSGV TF + K P S V+ + EE D
Sbjct: 52 -KKGYSGVVTFTK-KEPLS---VSYGINIEEH---------------------------D 79
Query: 128 SEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRR-IFVVGDL 179
EGR + + F L NVY P R + ++FK +F L+ ++ + V GDL
Sbjct: 80 KEGRVITCEFESFYLVNVYTPNSQQALFRLSYRMSWEVEFK-KFLKALELKKPVIVCGDL 138
Query: 180 NIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYT 231
N+A ID R +AG D + +F S L+ +G F D FR +P + +AYT
Sbjct: 139 NVAHNEIDLENPKTNRKNAGFSDEEREKF-----SELLNAG--FIDTFRYFYPNKEKAYT 191
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGP 256
W A + G RID+ LC+ P
Sbjct: 192 WWSYMQQARDKDIGWRIDYFLCSNP 216
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 136/324 (41%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKIK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQGRR--- 172
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + VL+ R+
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIENFVLKLRKAKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSNPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKARDKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 60/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQ----GRRI 173
D EGR + + + + N Y P A R+Q++ F LQ + +
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQKLDRKKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDTFRYLYPDR 194
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|169787350|gb|ACA80114.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSTLDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VVRDEMDTCNV 178
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 135/330 (40%), Gaps = 101/330 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
M+ +++NVNGLR + + LD F+ AD C QE K+ +L +L +GYE+
Sbjct: 1 MRFISWNVNGLRACIK-----KGFLDYFNEINADFFCLQEIKMSEGQLDLEL---EGYET 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
F++ + R GYSG A F + K P++ + G G+E+
Sbjct: 53 FYNYAQ-----RKGYSGTAIFTKFK----------PLSVKYGM-------------GMEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL--------QFFHVLQ 169
D+EGR + ++ F L Y P + E +R+ +++ + +
Sbjct: 85 H--------DNEGRLITLEYDDFFLVTCYTPNSKQE-LLRLDYRMVWEDAFRNYLLDLNK 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG F E S+L++SG F D FR
Sbjct: 136 TKSVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDEEREK--MSILLDSG--FTDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P++ Y+ W + + N G RID+ L + + D Q H +
Sbjct: 190 YPDKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQSIL----------- 238
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
GSDH PVY+
Sbjct: 239 ---------------------GSDHCPVYL 247
>gi|169787220|gb|ACA80049.1| putative DNA lyase [Colletotrichum cereale]
gi|169787222|gb|ACA80050.1| putative DNA lyase [Colletotrichum cereale]
gi|169787366|gb|ACA80122.1| putative DNA lyase [Colletotrichum cereale]
gi|169787368|gb|ACA80123.1| putative DNA lyase [Colletotrichum cereale]
gi|169787370|gb|ACA80124.1| putative DNA lyase [Colletotrichum cereale]
gi|169787452|gb|ACA80165.1| putative DNA lyase [Colletotrichum cereale]
gi|169787454|gb|ACA80166.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVVMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VVRDEMDTCNV 178
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 112/272 (41%), Gaps = 69/272 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK + + +P
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVKPLSVARGIGIP----------------------- 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQ 169
+ D+EGR + + L VY P R D F+ +
Sbjct: 84 --------QHDNEGRVITMEFDDLYLVTVYTPNSQNALARLDYRMAWEDAFRAFLLELRS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 136 KKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRAL 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P++ AYT W A + N G RID+ L +
Sbjct: 190 YPDKVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 112/272 (41%), Gaps = 69/272 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK + + +P
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVKPLSVARGIGIP----------------------- 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQ 169
+ D+EGR + + L VY P R D F+ +
Sbjct: 84 --------QHDNEGRVITMEFDDLYLVTVYTPNSQNALARLDYRMAWEDAFRAFLLELRS 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 136 KKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRAL 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P++ AYT W A + N G RID+ L +
Sbjct: 190 YPDKVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 137/324 (42%), Gaps = 88/324 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R + + +L +++ ++I FQETK L D +M GYE
Sbjct: 1 MKIVSWNVNGIRAALKK--NLIDFIENNMFEVIMFQETKGDIVPL--DFIMM-GYEVI-- 53
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGV T ++K P+ +G
Sbjct: 54 ---SFPAKRKGYSGVMTLTKLK----------PINVIKGL-------------------- 80
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH-----VLQGRR--- 172
++ + D EGR V + F + N Y PRA ++ R+ FKL+F + VL+ R+
Sbjct: 81 -QIKEFDDEGRTVTLELKDFYVINAYFPRA-GDNLERLDFKLKFNNEIENFVLKLRKAKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDF--AKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAY 230
+ + GD NIA ID + P + R WF L F D FR HP R+ Y
Sbjct: 139 VILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFL---SLGFIDTFRYLHPNVRK-Y 194
Query: 231 TCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGN 290
+ W A + N G R+D+ + + +L+ + DILID
Sbjct: 195 SWWSYMGKAREKNLGLRLDYCIVS-------EELKD------RIKMADILID-------- 233
Query: 291 APRWKGGMSTRLEGSDHAPVYMCL 314
++GSDHAP+ + L
Sbjct: 234 -----------IQGSDHAPIILEL 246
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 132/332 (39%), Gaps = 101/332 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + F + VY P R D T +F+ ++ +
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLKNLEKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 137 KPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 190 YPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH--------------- 234
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 -----------------TQIEGSDHCPVVLIL 249
>gi|169787372|gb|ACA80125.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 36/187 (19%)
Query: 28 FDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSS 87
+ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 5 LEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR------- 53
Query: 88 TEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCV 133
P+ AEEG TG+L S + + + + + L +DSEGRCV
Sbjct: 54 NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCV 113
Query: 134 ITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPA 184
+ + F+L Y P + D+ R F+L + L G+++ + GDLN+
Sbjct: 114 VLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLNVIRD 171
Query: 185 AIDRCDA 191
+D C+
Sbjct: 172 EMDTCNV 178
>gi|169787282|gb|ACA80080.1| putative DNA lyase [Glomerella tucumanensis]
Length = 233
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 36/190 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVVMQETKVQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPLRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLSGDVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLNALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCD 190
+ +D C+
Sbjct: 168 VIRDEMDTCN 177
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 132/332 (39%), Gaps = 101/332 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P+ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKQE----------PLTVSYGL-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + F + VY P R D T +F+ ++ +
Sbjct: 85 H--------DKEGRVITLEFEKFYMVTVYTPNSKDKLLRLDYRMTWEDEFRKYLKNLEKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 137 KAVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 190 YPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH--------------- 234
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 -----------------TQIEGSDHCPVVLIL 249
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ + +ADI C QE+K+++ + D GY +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFNEVNADIFCIQESKMQKDQ--GDFSF-QGYSEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV ++K L VA + G +
Sbjct: 56 SAE-----KKGYSGVVVLSKIK--------PLQVAYDMGIS------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + ++ F L NVY P A E R++++++ F L+ +
Sbjct: 84 ----HHDKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKKLKKHKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D + + S L+ESG F D FR +P
Sbjct: 139 VVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFRHFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ LC+
Sbjct: 192 TLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 124/286 (43%), Gaps = 66/286 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ ++ DAD C QETK++ +L + DGYES+++
Sbjct: 1 MKFISWNVNGLRACVTK--GFKESFAEIDADFFCLQETKMQAGQLD---IAFDGYESYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ G G+++
Sbjct: 56 YA-----DKKGYSGTAIFTKHK----------PLSVSYGL-------------GIDEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
D EGR + + F L Y P A + R+ +++Q+ Q +
Sbjct: 86 ------DHEGRVITLEMEKFYLVTCYTPNA-QDGLKRLDYRMQWEDDFQAYVKRLDEKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHP 224
+ V GDLN+A ID R +AG F+ E R+ + + G F D FR+ +P
Sbjct: 139 VIVCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-----RAKMTQFLGNGFIDSFRTLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
E+ Y+ W A + N G RID+ L + Q D + H V
Sbjct: 192 EQV-TYSWWSYRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTEV 236
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
MK +++NVNGLR + FG +++ DAD +C QETK++ +L++DL Y +++
Sbjct: 1 MKFISWNVNGLR---AVFGKGFPEIIQGLDADFVCLQETKMQAGQLEADL---PSYHTYW 54
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ + GYSG A + R + P++ G G++
Sbjct: 55 NYAE-----KKGYSGTAIYTRHE----------PLSVSYGI-------------GIDHH- 85
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVR---------IQFKLQFFHVLQG 170
D+EGR + ++ F L VY P +S+D +R F+ + +
Sbjct: 86 -------DTEGRVITLEYTDFYLVTVYVP--NSQDDLRRLGYRMTWEDDFRAYLVELDKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ + V GDLN+A ID R +AG +E R F+ +L F D FR H
Sbjct: 137 KPVIVCGDLNVAHQEIDLKNPKSNRRNAG---FTDEERGKFQELL---DAGFIDTFRYFH 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P++R+ Y+ W A + N G RID+ + +
Sbjct: 191 PDQRDIYSWWSYRFKARERNSGWRIDYFVTS 221
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 119/272 (43%), Gaps = 69/272 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF +AD+ C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELNADVFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQGRR- 172
+ D+EGR + + L VY P RA R+ ++ F L R
Sbjct: 84 EH--------DNEGRVITMELPDVYLVTVYTPNAKRALERLDYRMAWEDSFRAFLLDLRA 135
Query: 173 ---IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ V GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 136 KKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRAL 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P++ AYT W A + N G RID+ L +
Sbjct: 190 YPDKTGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L + L++ +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFL-EYLEASNADIFCLQEIKLQSGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----QLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E + R ++E G F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ AY+ W GA N G R+D+ + +
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 45/268 (16%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI ++NVNGLR + + G +++ D++C QETK R++++ DL GY +++
Sbjct: 1 MKIYSWNVNGLRAVLKK-GLFMPFIETHQPDVLCLQETKSEREQVEIDLA---GYHEYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T GYSG A F R + P++ GF + +K ++D +
Sbjct: 57 SATTK-----GYSGTAIFSRTE----------PLSVTNGFAKAV----AKKYTLVDDAGR 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF--------HVLQGRR 172
D ++EGR + + F + VY P A +D R+ + Q + L+ ++
Sbjct: 98 DS----ETEGRVITAEFEKFFVVTVYTPNA-KDDLSRLPLRSQHWDAAFLAHCKALEMKK 152
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+ GDLN+A +D + P+ + F R F+S L F D R H +
Sbjct: 153 PVVFCGDLNVAHTELDLANPKPNRGRKGFTDEERQGFQSFL---DAGFVDTLRMFH-QGN 208
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAG 255
Y+ W + N G RID++L +
Sbjct: 209 GHYSWWSHFANSRARNVGWRIDYVLVSA 236
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 110/247 (44%), Gaps = 59/247 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+S DAD+ C QE+K+++++ + GY F++C + GYSGV TF + K
Sbjct: 8 FFNSVDADVFCIQESKMQQEQNTFEF---KGYFDFWNCAI-----KKGYSGVVTFTK-KE 58
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
P S V+ + EE D EGR + + F L
Sbjct: 59 PLS---VSYGIDMEEH---------------------------DKEGRVITCEFESFYLV 88
Query: 144 NVYGP---RADSEDTVRIQFKLQFFHVLQG----RRIFVVGDLNIAPAAID-------RC 189
NVY P +A S + R+ ++++F L+ + + V GDLN+A ID R
Sbjct: 89 NVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRK 148
Query: 190 DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
+AG F+ E R F +L F D FR +P + +AYT W A + G RID
Sbjct: 149 NAG--FSDEE-REKFNELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRID 202
Query: 250 HILCAGP 256
+ LC+ P
Sbjct: 203 YFLCSNP 209
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 125/328 (38%), Gaps = 88/328 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+++ ++NVNGLR + +L DAD++ QE K +L ++ GY++F+
Sbjct: 238 LRLASWNVNGLRAIAKK--GFAELAGELDADLLAIQEIKAHPDQLPAEARALPGYQAFWL 295
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ R GYSGVA + R++ K++ G+ +
Sbjct: 296 PAK-----RKGYSGVAIYSRLEP-------------------------LKVLYGM---GQ 322
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--------GRR 172
+E K + EGR + + F L N Y P A E R+ FKL F Q +
Sbjct: 323 EE--KYEQEGRVLTMEFADFFLVNAYLPNAQPE-LARLPFKLDFCRHFQQFCENLATQKN 379
Query: 173 IFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ V GDLN+A ID P F+ E R W L F D FR + E
Sbjct: 380 VVVCGDLNVAHREIDLARPQENQQSPGFSPAE-RAWLDGFL---ANGFTDTFRLFNQEGG 435
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
YT W GA Q N G RID+ C+ +
Sbjct: 436 N-YTWWSYRGGARQRNVGWRIDYF-----CIDSAGRRRVR-------------------- 469
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCLG 315
+ G+ + GSDH PV + LG
Sbjct: 470 -------EAGIRPEIMGSDHCPVTLTLG 490
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 120/275 (43%), Gaps = 67/275 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD------ADIICFQETKLRRQELKSDLVMADG 54
MK +++NVNG R +L++ +D F AD +C QETKL + +++ D G
Sbjct: 1 MKFISWNVNGFR-------ALQRKMDVFSWLKETGADALCIQETKLHQDQVQID---TPG 50
Query: 55 YESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEG 114
Y F+ +D R GYSG A F + K P+ G G
Sbjct: 51 YHQFW-----NDAVRKGYSGTAIFTKNK----------PLRVTYGM-------------G 82
Query: 115 LEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL------ 168
+E D EGR + ++ + L VY P A D R+ ++L++
Sbjct: 83 IEVH--------DQEGRLITLEYEDYYLVTVYTPNA-KRDLTRLAYRLEWGAAFTDYMKR 133
Query: 169 --QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKH 223
+ + + GDLN+A AID + + F I R + L+ +G F D FR +
Sbjct: 134 LDEKKPVIFCGDLNVAHQAIDLTYPKNNKGNSGFTIEEREDFTALLNNG--FVDSFRHLY 191
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
PER +AY+ W A + N G RID+ + + CL
Sbjct: 192 PERTDAYSWWSFLFNARERNIGWRIDYFVLS-KCL 225
>gi|448115080|ref|XP_004202743.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
gi|359383611|emb|CCE79527.1| Piso0_001598 [Millerozyma farinosa CBS 7064]
Length = 467
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 127/334 (38%), Gaps = 82/334 (24%)
Query: 1 MKIVTYNVNGLRQRV-----SQFGS-LRKLLDSFDADIICFQETKLRRQELKS-DLVMAD 53
++ V++NVNG++ + F S D ADII QE KL LK +V
Sbjct: 25 IRFVSFNVNGVKTLFNYHPWTSFSSQFDPAFDFLKADIISLQELKLSSTTLKDLKIVSLK 84
Query: 54 GYESFFSCTRTSDKGRTGYSGVATFCRV---KSPFSSTEVALPVAAEEGFTGLLET--SG 108
Y+SF S R + GYSGV F R+ K + V AEEG +G L++
Sbjct: 85 NYKSFISLPRI----KKGYSGVGLFVRIPNDKEDLTVKSSLRVVKAEEGVSGFLKSPEDP 140
Query: 109 SKIMEGLEDFSKDEL-----------LKIDSEGRCV-ITDHGHFILFNVYGPRADSEDTV 156
SK L + D + +++D EGRC+ I ++F+VY P S+ +
Sbjct: 141 SKCYRDLPE--NDSIGGYPLIDNTLGVELDKEGRCICIELASKLVVFSVYCPANSSQTEI 198
Query: 157 RIQFKLQFFHVLQGR----------RIFVVGDLNIAPAAIDRCDAGPDFAKNEF------ 200
+++ F L R + V+ D+N+ ID D KN
Sbjct: 199 GETYRMNFLRALLERCYNLKYVLNKEVVVLSDINVCVDLIDHADELNTRVKNNLVTNPIL 258
Query: 201 ---------------------------RIWFRSMLVESG---------GSFFDVFRSKHP 224
R S +V+S FD R K
Sbjct: 259 LGSPNSGNLFERANIEECIKFKSSTPARKLLNSYVVQSENFKDLSTDRNFLFDSTRIKQE 318
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
R +T W + T A Q NYG+RID IL + +
Sbjct: 319 RRMNMFTVWNTLTNARQSNYGSRIDLILASSEIM 352
>gi|169787348|gb|ACA80113.1| putative DNA lyase [Colletotrichum cereale]
gi|169787446|gb|ACA80162.1| putative DNA lyase [Colletotrichum cereale]
gi|169787462|gb|ACA80170.1| putative DNA lyase [Colletotrichum cereale]
gi|169787492|gb|ACA80185.1| putative DNA lyase [Colletotrichum cereale]
gi|169787494|gb|ACA80186.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GD+N
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDVN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 110/247 (44%), Gaps = 59/247 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+S DAD+ C QE+K+++++ + GY F++C + GYSGV TF + K
Sbjct: 8 FFNSVDADVFCIQESKMQQEQ---NTFEFKGYFDFWNCAI-----KKGYSGVVTFTK-KE 58
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
P S V+ + EE D EGR V + F L
Sbjct: 59 PLS---VSYGIDIEEH---------------------------DKEGRVVTCEFESFYLV 88
Query: 144 NVYGP---RADSEDTVRIQFKLQFFHVLQG----RRIFVVGDLNIAPAAID-------RC 189
NVY P +A S + R+ ++++F L+ + + V GDLN+A ID R
Sbjct: 89 NVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRK 148
Query: 190 DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
+AG F+ E R F +L F D FR +P + +AYT W A + G RID
Sbjct: 149 NAG--FSDEE-REKFSELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRID 202
Query: 250 HILCAGP 256
+ LC+ P
Sbjct: 203 YFLCSNP 209
>gi|253997612|ref|YP_003049676.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
gi|253984291|gb|ACT49149.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
Length = 256
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 121/274 (44%), Gaps = 54/274 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI++ N+NG+R ++ L L + DAD+IC QE K + ++ ++ +GY +F
Sbjct: 1 MKIISLNLNGIRSATNK--GLYAWLKNQDADVICMQELKAQAGDMTEQMLNPEGYYGYFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + + K A+ GL G+ED
Sbjct: 59 YAE-----KKGYSGVGIYSKTK-------------ADSVIEGL----------GIED--- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-------TVRIQFKLQFFHVLQ-GRR 172
IDSEGR + G+ + ++Y P S + +V +F Q ++Q GR
Sbjct: 88 -----IDSEGRYLEARFGNLSVVSLYLPSGSSGEERQAFKFSVMERFMPQLHALVQSGRD 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD NIA D + + + F R W + + G + DV+R+ +P+ +
Sbjct: 143 VVICGDWNIAHKEADLKNWKGNRKNSGFLPEERAWLTQLFDDMG--WVDVYRTLYPDTTD 200
Query: 229 A-YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
A YT W + A N G RID+ + A P K
Sbjct: 201 ACYTWWSNRGQAWANNVGWRIDYQI-ATPAFAAK 233
>gi|410940025|ref|ZP_11371846.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
gi|410784888|gb|EKR73858.1| exodeoxyribonuclease III [Leptospira noguchii str. 2006001870]
Length = 254
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 112/268 (41%), Gaps = 58/268 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK ++ N NG+R + + L + D ICFQETK + ++ + L GY F
Sbjct: 1 MKFISLNCNGIRSSLEK--GLADYIRDTKPDFICFQETKANQDQVSTSLWEEGGYTPIFH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA + K P KI G+ D
Sbjct: 59 SAE-----KKGYSGVAILYK-KPP------------------------EKITIGIGD--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ----GRR---- 172
D EGR + ++ +F L+N+Y P + D VR K++F + Q RR
Sbjct: 86 ---PFFDKEGRSIYLEYSNFALWNLYFPSGTTGD-VRQAAKMKFLDLFQKESSKRRKKQS 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
I V GD+NIA + D D + AKN E R W L + D FR HP++
Sbjct: 142 NIIVCGDVNIAHTSQDIHDPKGN-AKNSGFLPEEREWLSGFL---NKGWVDTFRYLHPDK 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+E Y+ W +GA N G RID+
Sbjct: 198 QE-YSWWTFRSGARAKNKGWRIDYFFVT 224
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 120/270 (44%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVITKGGFLEYLEES-NADIFCLQEIKLQSGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----QLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E + R ++E G F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ AY+ W GA N G R+D+ + +
Sbjct: 193 NQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 118/273 (43%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F RVK + + +P
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRVKPLSVARGIGIP----------------------- 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ 169
+ D+EGR + + L VY P + + R+ +++ F L+
Sbjct: 84 --------QHDNEGRVITMEFDDLYLVTVYTPNSQNA-LARLDYRMAWEDAFRSFLLELR 134
Query: 170 GRRIFVV-GDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ VV GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 135 SKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFGELL---AAGFVDTFRA 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P++ AYT W A + N G RID+ L +
Sbjct: 189 LYPDKVGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|169787328|gb|ACA80103.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPSEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 132/332 (39%), Gaps = 101/332 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + F + VY P R D T +F+ ++ +
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLKNLEKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 137 KPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FVDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 190 YPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH--------------- 234
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 -----------------TQIEGSDHCPVVLIL 249
>gi|169787460|gb|ACA80169.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPSEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 123/278 (44%), Gaps = 62/278 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + L L + DADIIC QETK+ Q+ + DL +GY +++
Sbjct: 1 MKLISWNVNGLRAVMRKMDFLSYLKEE-DADIICLQETKI--QDGQVDL-QPEGYHVYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P+ G GLE+
Sbjct: 57 YAV-----KKGYSGTAVFSKQE----------PLQVIYGI-------------GLEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D EGR + + + + VY P + RI +++Q+ L Q +
Sbjct: 87 ------DQEGRVITLEFENVFVITVYTPNS-RRGLERIDYRMQWEEALLSYILELDQKKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E + R +E+G F D FR +P+
Sbjct: 140 VILCGDLNVAHQEIDLKNPKANRNNAG--FSDQEREAFTR--FLEAG--FVDSFRHVYPD 193
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
AY+ W GA N G RID+ + + Q D
Sbjct: 194 LEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIED 231
>gi|169787212|gb|ACA80045.1| putative DNA lyase [Colletotrichum cereale]
Length = 232
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 139/333 (41%), Gaps = 97/333 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R V++ + DADI C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGIRACVTK--GFLDFFNEVDADIFCLQETKLQEGQIELDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S V + EE
Sbjct: 56 YAE-----KKGYSGTAIFTK-QEPIS---VNYGIQIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + + +F VY P + SE R+ +++++ + +
Sbjct: 86 ------DKEGRVITLEFDNFYFVTVYTPNSQSE-LKRLDYRMKWEDDFRKYLLKLNSKKG 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R +AG D + +F + L+ESG F D +R +P
Sbjct: 139 VIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKF-----TELLESG--FIDTYRHFNP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++ Y+ W A + N G RID+ CA L +N V+ ++
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDY-FCASKDL-------ENNLVSADIH--------- 234
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
T++ GSDH P+ + + ++
Sbjct: 235 ---------------TQILGSDHCPIELVVKDL 252
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 120/262 (45%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G L + DADII QETK + +L + V +GY +F
Sbjct: 82 LKISSWNVSGIRAVIKKNGMEYMLKE--DADIIALQETKCDKNKLPEE-VKLNGYHYYFL 138
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GY GVA + + K P+ I GL++
Sbjct: 139 ESK-----KPGYCGVALYTKEK----------PI---------------DIKYGLDN--- 165
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQ----FKLQFFHVLQGRRI 173
++ DSEGR + ++ +F L NVY P A + R++ FK ++ + + +
Sbjct: 166 ---VEFDSEGRLITAEYSNFYLVNVYVPNAGQKLITLPKRLKWNEAFKAYVKNLDEKKPV 222
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
+ GD+N+A ID + + F RS + + F D FR+ +P++ AYT
Sbjct: 223 IICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPDKEGAYTF 282
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ L +
Sbjct: 283 WSYFANARSKNIGWRLDYFLVS 304
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 122/279 (43%), Gaps = 64/279 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R + P+A G G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTRKE----------PIAVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F ++L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRFLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 126/283 (44%), Gaps = 63/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG R + + +S +ADI C QE K++ ++ +D + +GY +
Sbjct: 1 MKLISWNVNGYRAVMKK--GFMDAFNSLNADIFCLQEIKMKENQM-TDEMNIEGYHRY-- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG + +V+ P+ G G+++
Sbjct: 56 ---SYSANKAGYSGTLVYTKVE----------PIGVSYGI-------------GIDEH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + ++ F L NVY P + + R+ +++ + ++L+ R+
Sbjct: 88 ------DTEGRVITCEYEDFFLVNVYTPNS-KQKLERLDYRMVWEDEFHNYLNILRDRKP 140
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R AG D +N+ S+L+ G + D FR +P
Sbjct: 141 VIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKM-----SLLLNDG--YIDTFRYFYP 193
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
++ + Y+ W A + N G RID+ L + D + H
Sbjct: 194 DKTDEYSYWSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIH 236
>gi|169787234|gb|ACA80056.1| putative DNA lyase [Colletotrichum cereale]
gi|169787236|gb|ACA80057.1| putative DNA lyase [Colletotrichum cereale]
gi|169787238|gb|ACA80058.1| putative DNA lyase [Colletotrichum cereale]
gi|169787242|gb|ACA80060.1| putative DNA lyase [Colletotrichum cereale]
gi|169787248|gb|ACA80063.1| putative DNA lyase [Colletotrichum cereale]
gi|169787250|gb|ACA80064.1| putative DNA lyase [Colletotrichum cereale]
gi|169787262|gb|ACA80070.1| putative DNA lyase [Colletotrichum cereale]
gi|169787268|gb|ACA80073.1| putative DNA lyase [Colletotrichum cereale]
gi|169787276|gb|ACA80077.1| putative DNA lyase [Colletotrichum cereale]
gi|169787286|gb|ACA80082.1| putative DNA lyase [Colletotrichum cereale]
gi|169787294|gb|ACA80086.1| putative DNA lyase [Colletotrichum cereale]
gi|169787308|gb|ACA80093.1| putative DNA lyase [Colletotrichum cereale]
gi|169787464|gb|ACA80171.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 125/287 (43%), Gaps = 64/287 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S +M GL
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPIS------------------------VMYGL----- 81
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
+ + D EGR + + F + +Y P R + ED R K + +
Sbjct: 82 -GIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F +L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVT 271
E+ AY+ W GA N G R+D+ + + H+ D + ++ VT
Sbjct: 193 EQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVT 239
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V + LD F ADI C QETKL+ ++ +L + Y +
Sbjct: 1 MKLISWNVNGLRACVQ-----KGFLDYFHEMGADIFCVQETKLQEGQIDLNLENYNQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F ++K P++ G +E
Sbjct: 56 Y--------AAKKGYSGTAVFTKIK----------PISVSYGLGEHME------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
D EGR + + F L NVY P + D R+ ++L++ + +
Sbjct: 86 ---------DHEGRAITLEFPSFYLVNVYTPNS-QRDLARLSYRLEWEDNIRNYLLELDK 135
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
+ + + GDLN+A ID + + + F R + L++SG F D FR +P++
Sbjct: 136 VKPVILCGDLNVAHQEIDLKNYKTNRGNSGFTDEEREKMTRLLDSG--FVDSFRYLYPDK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ Y+ W + N G RID+ + +
Sbjct: 194 GDVYSWWSYMNKVRERNIGWRIDYFILS 221
>gi|394989886|ref|ZP_10382719.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
gi|393791386|dbj|GAB72358.1| exodeoxyribonuclease III Xth [Sulfuricella denitrificans skB26]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 59/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+VT+NVN L+ R+ Q + L + D++C QETKL + + A GY++ FS
Sbjct: 1 MKLVTWNVNSLKVRLPQ---VLDWLAAHQPDVLCLQETKLEDVNFPAAAISAAGYQTVFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA + TS S+I+ + ++
Sbjct: 58 -------GQKTYNGVAILSK-------------------------TSASEIITAIPGYA- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQGR--------- 171
D + R + + N+Y P S D+ + Q+KL + L
Sbjct: 85 ------DVQKRVLAATIAGVRVINLYIPNGQSVDSDKYQYKLGWLEALTAWLTDELACHP 138
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSM---LVESGGSFFDVFRS-KHPERR 227
R+ V+GD NIAP D D + F + R LV+SG D FR + PE+
Sbjct: 139 RLAVLGDFNIAPDDRDVHDPKAWEGQVLFSLPEREAFQRLVDSG--LTDSFRLFEQPEK- 195
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAG 255
Y+ W A + N G RIDHIL +G
Sbjct: 196 -IYSWWDYRMNAFRRNMGLRIDHILLSG 222
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 106/268 (39%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+ V++NVNGLR + + + DAD C QETK++ + DL GYE +F
Sbjct: 1 MRFVSWNVNGLRAALKK--GFMEAFKELDADAFCLQETKMQEGQAILDL---PGYEQYFY 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F RVK + + +P
Sbjct: 56 SAE-----KKGYSGTAIFTRVKPLSVAYGIGIP--------------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
+ D EGR + + L VY P R D T F+ + + +
Sbjct: 84 ----EHDHEGRVITMEFNDVYLVTVYTPNAKRALERLDYRMTWEDAFRAFLLDLRAKKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID R +AG +E R F +L F D FR+ +P+
Sbjct: 140 VVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFTELL---NAGFVDTFRALYPDL 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W A + N G RID+ L +
Sbjct: 194 TGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 132/332 (39%), Gaps = 101/332 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P+ G G+E+
Sbjct: 53 YWNYAE-----KKGYSGTAIFTKQE----------PLTVSYGL-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQG 170
D EGR + + F + VY P R D T +F+ ++ +
Sbjct: 85 H--------DKEGRVITLEFEKFYMVTVYTPNSKDELLRLDYRMTWEDEFRKYLKNLEKK 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 137 KPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 190 YPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH--------------- 234
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 -----------------TQIEGSDHCPVVLIL 249
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNTGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|169787434|gb|ACA80156.1| putative DNA lyase [Colletotrichum cereale]
gi|169787472|gb|ACA80175.1| putative DNA lyase [Colletotrichum cereale]
gi|169787474|gb|ACA80176.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 91/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + +ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILEADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GD+N
Sbjct: 110 GRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDVN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|354597622|ref|ZP_09015639.1| exodeoxyribonuclease III [Brenneria sp. EniD312]
gi|353675557|gb|EHD21590.1| exodeoxyribonuclease III [Brenneria sp. EniD312]
Length = 268
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 117/274 (42%), Gaps = 56/274 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q + +++ D+I QETK+ D V GY F+
Sbjct: 1 MKVVSFNINGLRARPHQLAA---IIEQHRPDVIGLQETKVHDDMFPLDEVSQYGYHVFY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C K+P P+A GF E + +I+ + DF+
Sbjct: 57 ------HGQKGHYGVALLC--KTP--------PIAVRRGFPTDEEDAQRRII--MADFA- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFF---------HVLQG 170
T+ G + N Y P+ +S D ++ K +F+ H L
Sbjct: 98 --------------TEQGTLTVINGYFPQGESRDHPIKFPAKTRFYQDLQNYIEQHHLAA 143
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 222
+ ++GDLNI+P +D G D K R S L E G D FR+
Sbjct: 144 HPLIIMGDLNISPTDLD-IGIGEDNRKRWLRTGKCSFLPEEREWLARLQGWGLVDTFRAA 202
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGP 256
+P+ + ++ + + N G RID IL + P
Sbjct: 203 NPDCNDRFSWFDYRSAGFDTNRGLRIDLILASRP 236
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMIWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 121/282 (42%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR + R + DAD C QETK+ QE + DL +GY S+++
Sbjct: 2 IKLISWNVNGLRACCDK--GFRDIFTQLDADFFCLQETKM--QEGQLDLSF-EGYTSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P+ G G+++
Sbjct: 57 YAE-----KKGYSGTAIFTKHQ----------PLQVTYGL-------------GIDEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F L VY P R D T F+ + Q + +
Sbjct: 87 ------DHEGRVITLEMEKFFLVTVYTPNSQDGLKRLDYRMTWDDDFRAYLQKLDQSKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GDLN+A ID R +AG D + +F+ +L+++G F D FR +PE
Sbjct: 141 LVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQ-----LLLDAG--FIDTFRYFYPE 193
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+ Y+ W A + N G RID+ L + + + + H
Sbjct: 194 QTNIYSWWSYRFKAREKNAGWRIDYFLASASLADKLKEAKIH 235
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 63/264 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 1 MKLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY-- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 57 ------AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH-------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + + F + VY P + +E R+ +++ F + + +
Sbjct: 86 ------DTEGRVITLEFEEFFMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 139 VVLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRID 249
+AY+ W A N G RID
Sbjct: 193 LTDAYSWWSYRMNARARNTGWRID 216
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 124/268 (46%), Gaps = 60/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + +ADI+C QETK++ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETEADILCLQETKVQDGQVS---LQPEGYHAYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQ----GRRI 173
D EGR + + + + N Y P A R+Q++ F LQ + +
Sbjct: 87 ------DQEGRVITLEFENVFVVNCYTPNAKRGLERIDYRLQWEADFKDYLQKLDRKKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F++ E R F ++L F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSEQE-REAFSALL---NAGFTDSFRYLYPDR 194
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/330 (25%), Positives = 135/330 (40%), Gaps = 101/330 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
M+ V++NVNGLR + + LD F+ AD C QE K+ +L +L +GYE+
Sbjct: 1 MRFVSWNVNGLRACIK-----KGFLDYFNEINADFFCLQEIKMSEGQLDLEL---EGYET 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + R GYSG A F + P++ + G G+E+
Sbjct: 53 YYNYAQ-----RKGYSGTAIFTKYT----------PLSVKYGM-------------GIEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL--------QFFHVLQ 169
D+EGR + ++ F L Y P + E +R+ +++ + +
Sbjct: 85 H--------DNEGRLITLEYEDFFLVTCYTPNSKQE-LLRLDYRMVWEDAFRNYLLELNK 135
Query: 170 GRRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GDLN+A ID R +AG F E S+L++SG F D FR
Sbjct: 136 TKSVIVCGDLNVAHKEIDLKNPKTNRKNAG--FTDQEREK--MSILLDSG--FTDTFRYF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P++ Y+ W + + N G RID+ L + + D Q H
Sbjct: 190 YPDKENEYSWWSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIHQ-------------- 235
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312
R+ GSDH PVY+
Sbjct: 236 ------------------RILGSDHCPVYL 247
>gi|169787196|gb|ACA80037.1| putative DNA lyase [Colletotrichum cereale]
gi|169787202|gb|ACA80040.1| putative DNA lyase [Colletotrichum cereale]
gi|169787204|gb|ACA80041.1| putative DNA lyase [Colletotrichum cereale]
gi|169787226|gb|ACA80052.1| putative DNA lyase [Colletotrichum cereale]
gi|169787252|gb|ACA80065.1| putative DNA lyase [Colletotrichum cereale]
gi|169787254|gb|ACA80066.1| putative DNA lyase [Colletotrichum cereale]
gi|169787296|gb|ACA80087.1| putative DNA lyase [Colletotrichum cereale]
gi|169787298|gb|ACA80088.1| putative DNA lyase [Colletotrichum cereale]
gi|169787314|gb|ACA80096.1| putative DNA lyase [Colletotrichum cereale]
gi|169787374|gb|ACA80126.1| putative DNA lyase [Colletotrichum cereale]
gi|169787376|gb|ACA80127.1| putative DNA lyase [Colletotrichum cereale]
gi|169787378|gb|ACA80128.1| putative DNA lyase [Colletotrichum cereale]
gi|169787380|gb|ACA80129.1| putative DNA lyase [Colletotrichum cereale]
gi|169787382|gb|ACA80130.1| putative DNA lyase [Colletotrichum cereale]
gi|169787384|gb|ACA80131.1| putative DNA lyase [Colletotrichum cereale]
gi|169787386|gb|ACA80132.1| putative DNA lyase [Colletotrichum cereale]
gi|169787388|gb|ACA80133.1| putative DNA lyase [Colletotrichum cereale]
gi|169787390|gb|ACA80134.1| putative DNA lyase [Colletotrichum cereale]
gi|169787392|gb|ACA80135.1| putative DNA lyase [Colletotrichum cereale]
gi|169787394|gb|ACA80136.1| putative DNA lyase [Colletotrichum cereale]
gi|169787396|gb|ACA80137.1| putative DNA lyase [Colletotrichum cereale]
gi|169787398|gb|ACA80138.1| putative DNA lyase [Colletotrichum cereale]
gi|169787432|gb|ACA80155.1| putative DNA lyase [Colletotrichum cereale]
gi|169787436|gb|ACA80157.1| putative DNA lyase [Colletotrichum cereale]
gi|169787450|gb|ACA80164.1| putative DNA lyase [Colletotrichum cereale]
gi|169787456|gb|ACA80167.1| putative DNA lyase [Colletotrichum cereale]
gi|169787488|gb|ACA80183.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPESQQIGGYPRPDQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|20090923|ref|NP_616998.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19916002|gb|AAM05478.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 260
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 56/265 (21%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
++++NVNGLR + + G L LL+ D+IC QETK ++L ++ GY ++F
Sbjct: 7 LISWNVNGLRAAMKK-GFLDLLLEQ-KFDVICVQETKASPEKLPREVKNIPGYHNYFVSA 64
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
R+GYSGV TF + K P E G G+E+F
Sbjct: 65 E-----RSGYSGVGTFSKQK----------PFKVETGM-------------GIEEF---- 92
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRRI 173
D EGR + D+ +F L N+Y P + R+++K+ F+ +G+++
Sbjct: 93 ----DREGRFLRVDYENFTLMNIYFPNGKASQE-RLEYKMSFYDAFLDYANALKAEGKKL 147
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERREA 229
+ GD+N A ID + + F R W + D FR + E
Sbjct: 148 VICGDVNTAHREIDLARPKENETTSGFLPEERAWMDKFF---DAGYLDTFRLFNSEGGN- 203
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W T A + N G R+D+ +
Sbjct: 204 YSWWSLRTRARERNVGWRLDYFFVS 228
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 66/283 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + DAD C QETK++ +L DL GY+SF++
Sbjct: 1 MKFISWNVNGLRACVGK--DFEQQFKALDADFFCLQETKMQAGQL--DLQFP-GYQSFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + P+A G G+++
Sbjct: 56 YAE-----KKGYSGTAIYAK----------QAPLAVSYGI-------------GIDEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + ++ F L VY P + E R+ +++Q + H L ++
Sbjct: 86 ------DHEGRVITLEYESFFLVTVYTPNSQDE-LRRLDYRMQWEDDFQAYLHRLDEQKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHP 224
+ V GD+N+A ID R +AG F E R+ + + G F D FR+ +P
Sbjct: 139 VIVCGDMNVAHEEIDLKNPKTNRRNAG--FTDEE-----RAKMTQLLGHGFIDTFRTLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E ++ Y+ W A + N G RID+ L + Q D + H
Sbjct: 192 E-QQTYSWWSYRFRAREKNTGWRIDYFLISERLRPQLTDAKIH 233
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R +++ + DADI C QETK ++ ++K +L GY +++
Sbjct: 1 MKFISWNVNGIRACITK--GFEERFHELDADIFCLQETKCQQGQVKLEL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P S+ A + EE
Sbjct: 56 YA-----NRRGYSGTAIFTK-REPLSA---AYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + + + VY P + SE R+++++++ + + +
Sbjct: 86 ------DKEGRVITLEFDEYYFVTVYTPNSQSE-LRRLEYRMKWEEDFLAYLLKLQEKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GDLN+A ID R +AG F E + R++ ESG F D FR +P+
Sbjct: 139 VICCGDLNVAHQEIDLKNPKTNRKNAG--FTDEERACFTRAL--ESG--FIDTFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ Y+ W A + N G RID+ L + P L +K
Sbjct: 193 KEGVYSWWSYRFRAREKNAGWRIDYFLVS-PSLKEK 227
>gi|303328283|ref|ZP_07358721.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
gi|302861613|gb|EFL84549.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
Length = 268
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 113/273 (41%), Gaps = 56/273 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR ++ + DA I+ QETK ++LK +L +G+E+ +S
Sbjct: 3 IKLVSWNVNGLRALSAK--PEWEWFARTDAQIVALQETKAHPEQLKEELASPEGWEAHWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA F R+ +P + LP +G
Sbjct: 61 SSHV----KKGYSGVAVFSRM-TPL-AVRAELPDPQWQG--------------------- 93
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT----------VRIQFKLQFFHVL-- 168
EGR + + F FN Y P +E+ R+ +K+ FF
Sbjct: 94 --------EGRLLHLEFPDFHFFNGYFPNGGAEELDENGKPTGRFKRVPYKMGFFEAFLN 145
Query: 169 ------QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRS 221
+ + I V GD NIA AID + F R+ L + + D FR
Sbjct: 146 YAEECRKSKPIVVCGDFNIAHQAIDLARPKQNVKNTGFLPEERAFLDRFTAMGYVDTFRK 205
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
H ++ + Y+ W T A + N G RID+ +
Sbjct: 206 VHGDQPDQYSWWSYKTRAREKNIGWRIDYFFVS 238
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 125/288 (43%), Gaps = 56/288 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
K+ ++NVNGLR + + S ++ DAD+I QETKL+ +++ DL GY +S
Sbjct: 10 WKLASWNVNGLRAVLKKDPSFIDIVHQLDADVIALQETKLQEGQVEIDL---PGYHQVWS 66
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFS--STEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+ R GYSG A F RV+ P S + LP A E LL +
Sbjct: 67 YAQ-----RKGYSGTAVFTRVE-PLSVRHADSLLPFAGEGEAAELLAVAA---------- 110
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ-- 169
+EGR + F +VY P A +E RI ++ F L+
Sbjct: 111 ---------TEGRVCALEFDRFWFVDVYTPNAQNE-LARIDTRMAWDDAYRAFLKSLEDE 160
Query: 170 -GRRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFR 220
G+ + GD N+A ID R +AG D +++F + L+++G F D +R
Sbjct: 161 TGKPVITCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKF-----TELLDAG--FTDTWR 213
Query: 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
S +P+ Y+ W A + N G RID+ L + D + N
Sbjct: 214 SLNPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDARIRN 261
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 134/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L+ESG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P+ Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ EGSDH PV + L
Sbjct: 235 ------------------AQTEGSDHCPVVLFL 249
>gi|373486776|ref|ZP_09577448.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
gi|372011200|gb|EHP11799.1| exodeoxyribonuclease III Xth [Holophaga foetida DSM 6591]
Length = 258
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 114/281 (40%), Gaps = 53/281 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++N+NG R + L+ D D++ QE +R + + DL + E+ +
Sbjct: 1 MKFVSWNINGFRSALKN--GFMDWLEDTDPDVLSLQE--IRAEWDQVDLGVRQMLEANYD 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GY+G AT R +G G + T G G+ED+
Sbjct: 57 ICWFPATRKKGYAGSATLSR-----------------KGL-GWIHTPGL----GIEDY-- 92
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR V ++ G L Y P A S VR+ +K QF L QGR
Sbjct: 93 ------DCEGRIVQSERGDLTLLAGYFPNA-SSGLVRLPYKRQFALDLAERVRQVLAQGR 145
Query: 172 RIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
++ V GD+N+AP ID P F E R FR L DV R ++P
Sbjct: 146 QLIVTGDMNVAPEEIDLARPKDNRMSPGFTDEE-REDFRGYLASG---LRDVLREQNPGT 201
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
YT W GA N G RID L + + + D + H
Sbjct: 202 PGLYTWWSQRGGARAKNVGWRIDLFLVSEGLMGRVKDTRIH 242
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 119/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQDGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFHMITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P+++
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLYPDQKG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 133/331 (40%), Gaps = 99/331 (29%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR ++ ++ DAD +C QETK++ +L +DL Y S+++
Sbjct: 1 MKFISWNVNGLRAVFTK--GFPDIIKELDADFVCLQETKMQAGQLDADL---PSYISYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R P S V+ + EE
Sbjct: 56 YAV-----KKGYSGTAIYTR-HEPLS---VSYGIGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQG----RR 172
D EGR + ++ F L VY P + +D R+ +++ F L+G +
Sbjct: 86 ------DQEGRVITLEYPEFFLVTVYTPNS-QDDLRRLDYRMTWEDAFRSYLKGLDAKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG F E R L E F D FR +P
Sbjct: 139 VIICGDLNVAHKEIDLKNPKSNRRNAG--FTDEE-----RGKLQELLDAGFIDTFRYFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
++ + Y+ W A + N G RID+ + +
Sbjct: 192 DQADIYSWWSYRFKARERNSGWRIDYFVASERL--------------------------- 224
Query: 285 RWKPGNAPRWKG-GMSTRLEGSDHAPVYMCL 314
APR +G + T + GSDH PV + L
Sbjct: 225 ------APRLQGAAIHTEIYGSDHCPVELIL 249
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 115/270 (42%), Gaps = 67/270 (24%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYESF 58
K++++NVNGLR + D+F DADI C QE+KL+ +++ DL GY +
Sbjct: 5 KMISWNVNGLRAAAG-----KTFFDAFHELDADIFCIQESKLQEGQIELDL---PGYYDY 56
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
++ + GYSGVA F + K S + +P
Sbjct: 57 WNYAE-----KKGYSGVAMFTKEKPVNVSYGLGIP------------------------- 86
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG----R 171
+ D EGR + + + + Y P + +E R++++ FF ++G +
Sbjct: 87 ------EHDKEGRVITLEFPDYYVLTCYTPNSQNELKRLDYRMEWEDAFFAYIKGLDQKK 140
Query: 172 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ GDLN+A ID R +AG F E R + F D FR HP
Sbjct: 141 PLIYCGDLNVAHEEIDLKNPSTNRRNAG--FTDEEREKMTRVLT----NGFVDSFRYLHP 194
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
E ++AY+ W A + N G RID+ + +
Sbjct: 195 EEKDAYSWWSYRMKARERNVGWRIDYFIVS 224
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 115/266 (43%), Gaps = 54/266 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++NVNG+R Q + L DAD + QETK + +++ DGY + +
Sbjct: 1 MKIVSWNVNGIR--AVQGKGFAETLARLDADCLLLQETKAQVDQIEKVTADIDGYHIYSN 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C R GYSGV+ R A P+A + G+ E
Sbjct: 59 CAE-----RKGYSGVSLMSR----------AEPLAVVKDI-GIAEH-------------- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D EGR + + HF L NVY P + E VR+ ++ L + L+ R+
Sbjct: 89 ------DREGRVIAAEFEHFHLVNVYVPNSGQE-LVRLDYRRTWDAEFLTYLLKLESRKP 141
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKN----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ V GD N+A ID ++ K+ + I S +++G F D FR HP+
Sbjct: 142 VIVCGDFNVAHREIDIARPKANYNKSAGYTQAEIDGFSRFLDAG--FVDTFRHHHPD-TV 198
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A N G RID+ L +
Sbjct: 199 AYSWWSFRANARANNIGWRIDYALAS 224
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + ++ + DAD C QETK++ +L + +GY S+++
Sbjct: 1 MKFISWNVNGLRACCEK--GFKESFAALDADFFCLQETKMQEGQLDLEF---EGYRSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R +P + T GL GLE+
Sbjct: 56 YAE-----KKGYSGTAIFSR-HAPLNVT------------YGL----------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQG--------R 171
D EGR + + F L VY P +S+D + R+ +++Q+ + +
Sbjct: 86 ------DKEGRVITLEMPDFFLVTVYTP--NSQDGLKRLDYRMQWEEAFRAYLLQLDTRK 137
Query: 172 RIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ V GDLN+A ID R +AG D + +F I L++SG F D FR +
Sbjct: 138 PVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFRFFY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P+R Y+ W A + N G RID+ L +
Sbjct: 191 PDREGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 47/261 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KI ++NV GLR + + G L+ + DI C QETK +L +L GY ++ C
Sbjct: 424 KISSWNVAGLRAWLKKDGLQSLALE--EPDIFCLQETKCSNDQLPEELTHVPGYHPYWLC 481
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
GY+GVA + ++ +P+ E G G E+F
Sbjct: 482 MPG------GYAGVAIYSKI----------MPINVEYGI-------------GNEEF--- 509
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG----RRIF 174
D GR + ++ F L NVY P + + R++++ F +Q + +
Sbjct: 510 -----DDVGRMITAEYEKFYLINVYVPNSGRKLVNLEARMRWEKLFHSYVQKLDALKAVV 564
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCW 233
+ GD+N++ ID + + F R + E G F D FR +P+++ AYT W
Sbjct: 565 ICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGFVDTFRHLYPDKKGAYTYW 624
Query: 234 PSNTGAEQFNYGTRIDHILCA 254
+ A N G R+D+ + +
Sbjct: 625 TYMSNARARNVGWRLDYCIVS 645
>gi|345893652|ref|ZP_08844445.1| exodeoxyribonuclease III [Desulfovibrio sp. 6_1_46AFAA]
gi|345045906|gb|EGW49804.1| exodeoxyribonuclease III [Desulfovibrio sp. 6_1_46AFAA]
Length = 268
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 36/263 (13%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+V++NVNGLR ++ + DA I+ QETK ++LK +L +G+E+ +S
Sbjct: 3 IKLVSWNVNGLRALSAK--PEWEWFARTDAQIVALQETKAHPEQLKEELASPEGWEAHWS 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA F R+ E+ P EG LE G G F
Sbjct: 61 SSHV----KKGYSGVAVFSRMTPLAVRAELPDPQWQGEGRLLHLEFPGFHFFNGY--FPN 114
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
++D G+ G F R+ +K+ FF + +
Sbjct: 115 GGAEELDENGKPT----GRF---------------KRVPYKMGFFEAFLNYAEECRKSKP 155
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
I V GD NIA AID + F R+ L + + D FR H ++ + Y+
Sbjct: 156 IVVCGDFNIAHQAIDLARPKQNVKNTGFLPEERAFLDRFTAMGYVDTFRKVHGDQPDQYS 215
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W T A + N G RID+ +
Sbjct: 216 WWSYKTRAREKNIGWRIDYFFVS 238
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 122/268 (45%), Gaps = 60/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + ADI+C QETK++ ++ L +GY +++
Sbjct: 1 MKLISWNVNGLRAVMKKI-DINTYVQETKADILCLQETKVQDGQVSLQL---EGYHDYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F S E L V F GL G++D
Sbjct: 57 YAV-----KKGYSGTAVF--------SKEKPLHV-----FYGL----------GIDDH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRAD---SEDTVRIQFKLQFFHVLQ----GRRI 173
D EGR + + + + N Y P A R+Q++ F LQ + +
Sbjct: 87 ------DQEGRVITLEFENLFVVNCYTPNAKRGLERIDYRLQWEADFKEYLQKLDRKKPV 140
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F+ E + S L+ +G F D FR +P+R
Sbjct: 141 ILCGDLNVAHREIDLKNPKANRKNAG--FSDQEREAF--SALLNTG--FTDSFRYLYPDR 194
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W T A + N G R+D+++ +
Sbjct: 195 EGAYSWWSYRTNAREKNIGWRLDYVIVS 222
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 120/269 (44%), Gaps = 63/269 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNGLR +++ DADI C QE+K+ + +D V DGY +++
Sbjct: 1 MRLISWNVNGLRACMNK--GFMDFFRQIDADIFCIQESKMHPDQ--ADFVF-DGYHGYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + + P+ E G+E
Sbjct: 56 SAE-----KKGYSGVVVLSKQE----------PLCVEYDM-------------GIEHH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQG----RR 172
D EGR + ++ F L NVY P + E R+++++Q F + L+ +
Sbjct: 86 ------DKEGRVICAEYPDFYLINVYTPNSKRE-LERLEYRMQWEDDFLNFLKNLERKKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GDLN+A ID R +AG F E + L+E+G F D FR +P+
Sbjct: 139 LIICGDLNVAHKEIDLKNPKTNRRNAG--FTDEEREK--MTTLLENG--FIDTFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A Q N G RID+ LC+
Sbjct: 193 LEGAYSWWSYMGRARQNNTGWRIDYFLCS 221
>gi|169787208|gb|ACA80043.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPGQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 63/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG R + ++ DS +ADI C QE K++ ++ +D + +GY +
Sbjct: 1 MKLISWNVNGYRAVWKK--GFKEAFDSLNADIFCLQEIKMKENQM-TDEMEIEGYHRY-- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG + + + P+ G G+++
Sbjct: 56 ---SYSANKAGYSGTLVYTKTE----------PIGVSFGI-------------GIDEH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + ++ F L NVY P + + R+ +++ + ++L+ R+
Sbjct: 88 ------DTEGRVITCEYEDFFLVNVYTPNS-KQKLERLDYRMVWEDEFHNYLNILRDRKP 140
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R AG D +N+ S+L+ G + D FR +P
Sbjct: 141 VIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKM-----SLLLNDG--YIDTFRYFYP 193
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
++ + Y+ W A + N G RID+ + + D + H
Sbjct: 194 DKTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH 236
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 122/282 (43%), Gaps = 64/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + DAD C QETK++ +L + DGY+SF++
Sbjct: 1 MKFISWNVNGLRAVVGK--DFENTFKALDADFFCLQETKMQAGQLD---LQFDGYDSFWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R K P+ G G++
Sbjct: 56 YA-----DKKGYSGTAIYTRHK----------PLNVSYGI-------------GID---- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG--------RR 172
+ D EGR + + F L VY P + E+ R+ +++Q+ Q +
Sbjct: 84 ----QHDHEGRVITLEMPTFFLVTVYTPNS-QEELRRLDYRMQWEDDFQAYLHNLDKCKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GD+N+A ID R +AG F E + + L+++G F D FR K+PE
Sbjct: 139 VIVCGDMNVAHQEIDLKNPKTNRRNAG--FTDEERQK--MTQLLDAG--FTDTFRWKYPE 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
Y+ W A + N G RID+ L + + D + H
Sbjct: 193 -EVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIH 233
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 134/328 (40%), Gaps = 93/328 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + ++FDAD C QETKL+ +++ DL GY +++
Sbjct: 12 MKFISWNVNGLRAIVKK--NFLEAFETFDADFFCLQETKLQAGQIELDL---PGYTQYWN 66
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P +AA G G+E+
Sbjct: 67 YAE-----KKGYSGTAIFA--KEP--------ALAAHYGI-------------GIEEH-- 96
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D+EGR + ++ F L Y P R D T F+ + Q + +
Sbjct: 97 ------DAEGRVITLEYPEFFLVTCYTPNAQNELRRLDYRMTWEDAFRAYLTDLKQQKPV 150
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID + +AG F E R F ++L F D FR +P+
Sbjct: 151 ILCGDLNVAHQNIDLKNWKTNQKNAG--FTPEE-REKFSTLL---SAGFTDTFRYFYPDA 204
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
Y+ W A + N G RID+ + + DL D L+D K
Sbjct: 205 EGIYSWWSYRFNARKNNAGWRIDYFVVSD-------DLN------------DRLVDAK-- 243
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ T + GSDH PV + L
Sbjct: 244 -----------IHTEILGSDHCPVELQL 260
>gi|169787266|gb|ACA80072.1| putative DNA lyase [Colletotrichum cereale]
gi|169787312|gb|ACA80095.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELL----------------KID 127
P+ AEEG TG+L S D + + + +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRPGQLPGELDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + L G+++ + GD
Sbjct: 108 SEGRCVVLEFPAFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 119/262 (45%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G L + DADII QETK + +L + V +GY +F
Sbjct: 105 LKISSWNVSGIRAVIKKNGMEYMLKE--DADIIALQETKCDKNKLPEE-VKLNGYHYYFL 161
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GY GVA + + K P+ I GL++
Sbjct: 162 ESK-----KPGYCGVALYTKEK----------PI---------------DIKYGLDN--- 188
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQ----FKLQFFHVLQGRRI 173
++ DSEGR + ++ +F L NVY P A + R++ FK ++ + + +
Sbjct: 189 ---VEFDSEGRLITAEYSNFYLINVYVPNAGQKLITLPKRLKWNEAFKAYVKNLDEKKPV 245
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
+ GD+N+A ID + + F RS + + F D FR+ +P + AYT
Sbjct: 246 IICGDMNVAHQKIDLKNPDTNKKNAGFTQEERSGMTDFLDAGFVDTFRALYPNKEGAYTF 305
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ L +
Sbjct: 306 WSYFANARSKNIGWRLDYFLVS 327
>gi|424841662|ref|ZP_18266287.1| exodeoxyribonuclease III [Saprospira grandis DSM 2844]
gi|395319860|gb|EJF52781.1| exodeoxyribonuclease III [Saprospira grandis DSM 2844]
Length = 257
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 111/264 (42%), Gaps = 55/264 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++YNVNGLR + + + D DII QE K R+++ + + A GYE +
Sbjct: 1 MKVLSYNVNGLRAAIRK--GFVDWVKENDIDIIGLQEAKALREQVDLEELQAAGYEHIYW 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +VK+ LE G G+E F
Sbjct: 59 HAAE----KKGYSGVVVLSKVKAD-------------------LEVQGM----GIERF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR + D G + L N Y P S +VR + K F + +
Sbjct: 90 ------DKEGRVLRLDFGDWTLLNCYFPSGTS-GSVRQEVKYDFLDSIYDWVQELKKERP 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+I + GD NIA ID + + + F R W L E G F D FR +HPE +
Sbjct: 143 KILLQGDYNIAHEEIDIHNPKRNHKTSGFLPEERAWMSKWLEE--GGFVDSFRQQHPEEQ 200
Query: 228 EAYTCWPSNTG-AEQFNYGTRIDH 250
+ ++ W + A N G RID+
Sbjct: 201 K-FSWWSMRSKTARANNKGWRIDY 223
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 125/282 (44%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++NVNG+R + + + DADI C QETK++ +L+ + DGY + +
Sbjct: 1 MKLVSWNVNGIRACMKK--GFMDFFQAIDADIFCIQETKMQPGQLE---IETDGYVQYMN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++DK GYSGV F + K P S V+ + +E
Sbjct: 56 ---SADK--KGYSGVMVFSK-KEPLS---VSYGLGIDEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ----FFHVLQ----GRR 172
D EGR + ++ F L VY P + + +R+ +++Q F LQ +
Sbjct: 86 ------DHEGRVITCEYDTFYLVCVYTPNS-KDGLLRLDYRMQWEDAFRAYLQRLKESKS 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ V GDLN+A ID R +AG F E + L+ SG F D +R +P+
Sbjct: 139 VVVCGDLNVAHQEIDLKNPKTNRRNAG--FTDEEREK--MTTLLSSG--FVDSYRYLYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
+ Y+ W A + N G RID+ L + + + Q H
Sbjct: 193 KENVYSWWSYRFSAREKNAGWRIDYFLVSEDAKERIEEAQIH 234
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 64/295 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL + D Y
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDLNVEDYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEGFYIITLYTPNAKRGLERLDYRMKWEDDFRAYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P++
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 275
AY+ W GA N G R+D+ + + +Q D + H V H+N
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVSERIKNQIKDAKINSEVMGSDHCPVELHIN 251
>gi|374628249|ref|ZP_09700634.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
gi|373906362|gb|EHQ34466.1| exodeoxyribonuclease III [Methanoplanus limicola DSM 2279]
Length = 256
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 117/272 (43%), Gaps = 56/272 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
++V++NVNG+R V + G L + + DI+C QETK +L S+L +GY S+FS
Sbjct: 4 RLVSWNVNGIRA-VHKKGFL-DFVKEYSPDILCIQETKAHEDQLPSELRHPEGYFSYFSS 61
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGVA + + + P + GF GS
Sbjct: 62 AE-----KKGYSGVALYSKDE----------PESVRFGF-------GSD----------- 88
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFH---------VLQGRR 172
+ D+EGR +I D+ F LFN+Y P + R+ FKL F++ + GR
Sbjct: 89 ---RFDTEGRIIIADYPDFSLFNIYFPNGKAS-AERLDFKLDFYNECLNQAEKLLADGRN 144
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ + GD+N A ID + + F R W +L F D FR E
Sbjct: 145 VIICGDVNTAHKEIDLARPKANENVSGFLPVERAWIDKLL---DAGFADSFRMFTKEGG- 200
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQ 260
Y+ + + A + N G RID+ + L
Sbjct: 201 YYSWYDLKSRARERNVGWRIDYFFVSKKFLEH 232
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 126/283 (44%), Gaps = 65/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + +AD C QETK++ +L V +GY+S+++
Sbjct: 2 LKFISWNVNGLRACYDK--GFADAFNRLEADFFCLQETKMQEGQLD---VQFEGYQSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P S T GL G+E+
Sbjct: 57 YAE-----KKGYSGTAIFSKVK-PLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + + L VY P + E+ R+ ++++ + L+ ++
Sbjct: 87 ------DHEGRVITLELESYYLITVYTPNS-QEELRRLDYRMKWDDDFRAYLKKLEEKKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R +AG D + +F + L+ESG F D FR +P
Sbjct: 140 VIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKF-----TTLLESG--FTDTFRYFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E+ Y+ W A + N G RID+ L + + Q H
Sbjct: 193 EQEGIYSWWSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIH 235
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 118/268 (44%), Gaps = 63/268 (23%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNGLR V + + + DADI C QETKL+ +++ DL Y ++
Sbjct: 4 KLISWNVNGLRAAVKK--GFLEYFEEVDADIFCLQETKLQEGQIELDLPAYKDYWNY--- 58
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F +V+ P++ + G G+ E
Sbjct: 59 -----AVKKGYSGTAIFTKVE----------PLSVQYGL-GVPEH--------------- 87
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRRI 173
D+EGR + + F + VY P + +E R+ +++ F + + + +
Sbjct: 88 -----DTEGRVITLEFEDFYMVTVYTPNSQAE-LKRLDYRMTFEDAILEYVKNLDKTKPV 141
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID R +AG F+ E R F + L F D FR +P+
Sbjct: 142 VLCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-RAKFSAFL---DAGFIDSFRYFYPDL 195
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+AY+ W A N G RID+ + +
Sbjct: 196 TDAYSWWSYRMNARARNTGWRIDYFVVS 223
>gi|307719602|ref|YP_003875134.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
gi|306533327|gb|ADN02861.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
Length = 256
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 111/264 (42%), Gaps = 59/264 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+ + ++NVNG+R + L + ++ +I+C QETK R+ +L S+L DGY +++
Sbjct: 2 ISVYSWNVNGIRAAAKK--GLLEWIEKERPEILCLQETKARKDQLPSELARPDGYHTYW- 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ + GYSGVA F L S G+++F
Sbjct: 59 ----AEADKPGYSGVALFT------------------------LHEPASVEPLGVDEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---------FHVLQGR 171
D EGR +I D F+LF+ Y P + E R+ +KL + +V GR
Sbjct: 89 ------DREGRTLIADFRSFVLFDCYFPNS-QEAGARLDYKLAYCNAVKERADAYVAAGR 141
Query: 172 RIFVVGDLNIAPAAIDRC-----DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NIA +D + P + E R W L + D FR E
Sbjct: 142 HVLISGDFNIAHTPLDLARPEANEKNPGYLPEE-REWMTYFL---SSGYVDTFRMFTKEG 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDH 250
YT W A + + G RID+
Sbjct: 198 GH-YTWWTYRFKAREKDIGWRIDY 220
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 118/275 (42%), Gaps = 56/275 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQGGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S VA + EE
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLS---VAYGLGIEEH--------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLDEEKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P++
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTRVLEE---GFVDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
AY+ W GA N G R+D+ + + Q D
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVSERMKEQITD 231
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 117/265 (44%), Gaps = 55/265 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K++++NVNGLR + + +AD+ C QE KL+ +++ DL GY ++++
Sbjct: 2 LKLISWNVNGLRAVMKK--GFMDFFTEVNADVFCLQEIKLQEGQIEMDL---PGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P++ + G GLE+
Sbjct: 57 YAH-----KKGYSGTAIFTKQK----------PLSIQYGL-------------GLEE--- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
+D+EGR + + ++ + VY P + +R+ ++L F L +
Sbjct: 86 -----LDTEGRIITLEFDNYYVITVYTPNS-QHGLLRLDYRLLWEDAILSFVKALDNHKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ + GDLN+A ID + + + F + R + +E G F D FR HPE
Sbjct: 140 VLLCGDLNVAHEEIDLRNPKANKKNSGFTLEERGKMTQFLEKG--FVDTFRHFHPEEEGH 197
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W + + N G RID+ L +
Sbjct: 198 YSWWSYRSNCREKNVGWRIDYFLAS 222
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 123/271 (45%), Gaps = 67/271 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR + ++ + DAD C QETK++ +L + +GY S+++
Sbjct: 1 MKFISWNVNGLRACCEK--GFKESFAALDADFFCLQETKMQEGQLDLEF---EGYRSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R +P + T GL GLE+
Sbjct: 56 YAE-----KKGYSGTAIFSR-HAPLNVT------------YGL----------GLEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQG--------R 171
D EGR + + F L VY P +S+D + R+ +++Q+ + +
Sbjct: 86 ------DREGRVITLEMPDFFLVTVYTP--NSQDGLKRLDYRMQWEEAFRAYLLQLDTRK 137
Query: 172 RIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ V GDLN+A ID R +AG D + +F I L++SG F D FR +
Sbjct: 138 PVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGI-----LLDSG--FTDTFRFFY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
P+R Y+ W A + N G RID+ L +
Sbjct: 191 PDREGIYSWWSYRFKAREKNAGWRIDYFLVS 221
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 63/281 (22%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K++++NVNG+R + +S DADI C QE+K++ +L D+ GY +++
Sbjct: 8 KLISWNVNGIRACAGK--GFMDFFNSIDADIFCIQESKMQEGQLTLDMP---GYYQYWNY 62
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F + KS L ET G I E
Sbjct: 63 A-----DKKGYSGTAIFTKEKS-------------------LSETKGIGIDEH------- 91
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF---FHVL-----QGRRI 173
D EGR + ++ +F + VY P + +E R+ +++++ F + + +
Sbjct: 92 -----DHEGRVITLEYENFYMVTVYTPNSQNE-LARLDYRMKWEDDFRAYLKKLEENKPV 145
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GD+N+A ID R +AG F E M V F D FR +P++
Sbjct: 146 IVCGDMNVAHNEIDLKNPKTNRKNAG--FTDEE----REKMTVLLDDGFIDTFRYFYPDQ 199
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
Y+ W A + N G RID+ L + + D + H
Sbjct: 200 ENIYSWWSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIH 240
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 53/264 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R V + DADI C QE+KL+ +++ D +GY +++
Sbjct: 1 MKLISWNVNGIRACVQK--GFCDFFKEVDADIFCIQESKLQAGQIELDF---EGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P T G+ G+E+
Sbjct: 56 YAE-----KKGYSGTAIFTK-KEPLQVT------------YGM----------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSE---DTVRIQFKLQFFHVL----QGRRI 173
D EGR + + F + VY P + +E + R++++ +F L + + +
Sbjct: 86 ------DKEGRVITLEFEDFYMVTVYTPNSQNELARLSYRMEWEDEFRRFLKKLEETKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
V GDLN+A ID + + F I R S L+E+G F D FR +P+ + Y
Sbjct: 140 VVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELLEAG--FIDTFRYFYPDAMDMY 197
Query: 231 TCWPSNTGAEQFNYGTRIDHILCA 254
+ W A + N G RID+ L +
Sbjct: 198 SWWSYRFKAREKNTGWRIDYFLAS 221
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 128/283 (45%), Gaps = 65/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
+K +++NVNGLR + + LDSF +AD C QETKL+ +++ D+ GY
Sbjct: 4 LKYISWNVNGLRACIK-----KGFLDSFKNLNADCFCLQETKLQPHQIELDI---PGYYQ 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F ++K P++ G
Sbjct: 56 YWNSAI-----KKGYSGTALFTKIK----------PISVSYGMN---------------- 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQ 169
+ + D EGR + + + L Y P + + R+++++++ + +
Sbjct: 85 -----IEEHDQEGRLITAEFKNHFLVVCYTPNSQRQ-LARLEYRMKWENDFKNYLLKLTE 138
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + + GDLN+A ID + + F +E + + S L+E+G F D FR +P
Sbjct: 139 SKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKF--STLLENG--FTDTFRYLYP 194
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
++++AY+ W + + N G RID+ L + ++ D + H
Sbjct: 195 DKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIH 237
>gi|15594879|ref|NP_212668.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|195941668|ref|ZP_03087050.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi 80a]
gi|216264267|ref|ZP_03436259.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223888847|ref|ZP_03623438.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224532684|ref|ZP_03673301.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225548581|ref|ZP_03769628.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226321012|ref|ZP_03796557.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
gi|226321840|ref|ZP_03797366.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|2688454|gb|AAC66902.1| exodeoxyribonuclease III [Borrelia burgdorferi B31]
gi|215980740|gb|EEC21547.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223885663|gb|EEF56762.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224512302|gb|EEF82686.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225370611|gb|EEH00047.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226233029|gb|EEH31782.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|226233613|gb|EEH32349.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
Length = 255
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + FIL N Y P + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDL--ISPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + VNE +KR
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFI---------------------VNEF-----FKR 227
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
N K + ++ GSDH PV++ L +V
Sbjct: 228 ----NVE--KSLILDKVMGSDHCPVFLELADV 253
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G + L+ ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAK-GEFLEYLEESSADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T G I E
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSV------------------TYGLDIEEH------ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F S+L E F D +R +P++
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSSILEE---GFIDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 117/262 (44%), Gaps = 52/262 (19%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K V++NVNGLR VS+ + ++ +AD C QETK++ +L DL GY SF++
Sbjct: 3 KFVSWNVNGLRACVSK--DFAQTFETLNADFFCLQETKMQAGQL--DLQFP-GYTSFWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A + R K P S VA + +E
Sbjct: 58 A-----DKKGYSGTAIYAR-KEPLS---VAYGIGIDEH---------------------- 86
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR-I 173
D EGR + ++ F L NVY P A + R+ +++ + H L R+ +
Sbjct: 87 -----DHEGRVITLEYEDFYLVNVYTPNA-QDGLRRLDYRMTWEDDFQAYLHRLDARKPV 140
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
V GD+N+A ID + + F R+ + + G F D FR+ +PE + Y+
Sbjct: 141 IVCGDMNVAHEEIDLKNPKTNHRNAGFTDEERAKMTQLLGNGFTDTFRNLYPEAIK-YSW 199
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ L +
Sbjct: 200 WSYRFRAREKNTGWRIDYFLIS 221
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ + +ADI C QE+K+++ + D GY +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFNEVNADIFCIQESKMQKDQ--GDFSF-QGYSEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV ++K L V + G +
Sbjct: 56 SAE-----KKGYSGVVVLSKIK--------PLQVTYDMGIS------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + ++ F L NVY P A E R++++++ F L+ +
Sbjct: 84 ----HHDKEGRIITAEYERFYLVNVYTPNAKRE-LERLEYRMEWEDDFRAFVKKLKKHKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D + + S L+ESG F D FR +P
Sbjct: 139 VVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKM-----SELLESG--FIDTFRHFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ LC+
Sbjct: 192 TLEGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 47/261 (18%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KI ++NV GLR + + G L+ + DI C QETK +L +L GY ++ C
Sbjct: 397 KISSWNVAGLRAWLKKDGLQSLALE--EPDIFCLQETKCSNDQLPEELTHVPGYHPYWLC 454
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
GY+GVA + ++ +P+ E G G E+F
Sbjct: 455 MPG------GYAGVAIYSKI----------MPINVEYGI-------------GNEEF--- 482
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG----RRIF 174
D GR + ++ F L NVY P + + R++++ F +Q + +
Sbjct: 483 -----DDVGRMITAEYEKFYLINVYVPNSGRKLVNLEARMRWEKLFHSYVQKLDALKAVV 537
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCW 233
+ GD+N++ ID + + F R + E G F D FR +P+++ AYT W
Sbjct: 538 ICGDMNVSHNEIDLENPKTNTKNAGFTKEERDKMTELLGLGFVDTFRHLYPDKKGAYTYW 597
Query: 234 PSNTGAEQFNYGTRIDHILCA 254
+ A N G R+D+ + +
Sbjct: 598 TYMSNARARNVGWRLDYCIVS 618
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 60/274 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G + +FDAD C QE KL+ +++ + DGY +++
Sbjct: 1 MKFVSWNVNGLRA-VREKG-FEDIFKNFDADAFCLQEIKLQENQIE---LHFDGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + K P+ G G+E+
Sbjct: 56 YA-----NKKGYSGTAIYTKHK----------PIDVHYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D EGR + ++ ++ + VY P A E R+ ++ ++F L ++
Sbjct: 86 ------DMEGRLITLEYENYYIATVYTPNAQPE-LARLAYRQKWEDDFREYFKKLDEKKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD+N+A ID + P F+ E + +M + SG F D FR +P++
Sbjct: 139 VIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKF--TMFLNSG--FIDTFRYFYPDKT 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ Y+ W A + N G RID+ C L +K
Sbjct: 195 DEYSWWSYRFNARKNNAGWRIDY-FCVSDRLKEK 227
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 122/283 (43%), Gaps = 64/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V+ + DAD C QETKL+ ++ DL + D Y +++
Sbjct: 1 MKFISWNVNGLRAAVTH--GFMDTFNQLDADFFCVQETKLQLGQI--DLKLPDNYYQYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P+ A G G+++F
Sbjct: 57 YA-----DKKGYSGTAIFTKHK----------PLNASLGI-------------GIDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFK-------LQFFHVLQGRR- 172
D EGR + ++ F L Y P + + R+ F+ L + + L ++
Sbjct: 87 ------DHEGRVITLEYPSFYLITCYTPNS-GQQLKRLDFRQNWNKAFLDYINQLSAKKD 139
Query: 173 IFVVGDLNIAPAAIDRCD-------AG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ GDLN+A ID + AG D +N+F + L+ES +F D +R +P
Sbjct: 140 VIFCGDLNVAHETIDLKNPSSNHHAAGFTDEERNDF-----THLLES--NFVDTYRHFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E E Y+ W + N G RID+ + + Q D + H
Sbjct: 193 EVTEQYSWWSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIH 235
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 134/324 (41%), Gaps = 93/324 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR + + + + DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKLISWNVNGLRAVMKK--NFMDVFTQLDADFFCLQETKLQAGQIEMDL---PGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P A+ F G+ G E+
Sbjct: 56 YAV-----KKGYSGTAIFA--KEP-----------ADNVFYGI----------GKEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVL----QGRRI 173
D EGR + ++ F L Y P + +E R++++ F L + R +
Sbjct: 86 ------DQEGRVITLEYPQFYLVTCYTPNSQNELKRLDYRMEWEDDFVAYLDELKKDRPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GDLN+A ID + +AG NE R F ++L + D FR +PE
Sbjct: 140 IVCGDLNVAHQEIDLKNWKTNQKNAG---FTNEERAKFTALL---DHGYTDTFRHFYPEL 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRW 286
AY+ W A + N G RID+ + + +DL SH +T DIL
Sbjct: 194 TGAYSWWSYRFNARKNNAGWRIDYFIVS-------NDLTSH--LTSASIHADIL------ 238
Query: 287 KPGNAPRWKGGMSTRLEGSDHAPV 310
GSDH PV
Sbjct: 239 -----------------GSDHCPV 245
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 109/247 (44%), Gaps = 59/247 (23%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+S DAD+ C QE+K+++++ + GY F++C + GYSGV TF + K
Sbjct: 8 FFNSVDADVFCIQESKMQQEQ---NTFEFKGYFDFWNCAI-----KKGYSGVVTFTK-KE 58
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILF 143
P S + G I E D EGR + + F L
Sbjct: 59 PLSVS------------------YGIDIKEH------------DKEGRVITCEFESFYLV 88
Query: 144 NVYGP---RADSEDTVRIQFKLQFFHVLQG----RRIFVVGDLNIAPAAID-------RC 189
NVY P +A S + R+ ++++F L+ + + V GDLN+A ID R
Sbjct: 89 NVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRK 148
Query: 190 DAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRID 249
+AG F+ E R F +L F D FR +P + +AYT W A + G RID
Sbjct: 149 NAG--FSDEE-RKKFSELL---NAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRID 202
Query: 250 HILCAGP 256
+ LC+ P
Sbjct: 203 YFLCSNP 209
>gi|237749208|ref|ZP_04579688.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380570|gb|EEO30661.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 260
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 114/272 (41%), Gaps = 54/272 (19%)
Query: 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT 62
I + N+NG+R V + ++ +D +C QE K + ++ ++ DGY+ +F C
Sbjct: 4 ITSVNLNGIRSAVKK--GFLDWMNRSGSDFVCLQEIKAQSCDITPEVATPDGYQGYFECA 61
Query: 63 RTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDE 122
+ GYSG + + +P E GF GSK
Sbjct: 62 E-----KKGYSGTGIYTKT----------MPDKIENGF-------GSK------------ 87
Query: 123 LLKIDSEGRCVITDHGHFILFNVYGPRADS---EDTVRIQFKLQFFHVLQ-----GRRIF 174
+ D+EGR D F L ++Y P S + +F +F+ L+ GR
Sbjct: 88 --EFDAEGRYFQCDFRDFSLVSLYAPSGSSSPERQEAKFRFMDEFYPYLKKLKDSGREFV 145
Query: 175 VVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR-EA 229
+ GD NIA ID + + + F R W + E G + DV+R HP+ EA
Sbjct: 146 ICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTDVFDELG--WVDVYRLLHPDTTGEA 203
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
YT W + A N G RID+ + A P + +K
Sbjct: 204 YTWWSNRGQAYAKNVGWRIDYQI-ATPGIAKK 234
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 119/268 (44%), Gaps = 67/268 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR V LD F +AD+ C QETK++ +++ L DGY S
Sbjct: 1 MKLISWNVNGLRACVKN-----GFLDFFTKENADVFCIQETKIQEEQIPFQL---DGYYS 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F S TE P+ G G+E+
Sbjct: 53 YWNFAQ-----KKGYSGTAIF-------SKTE---PINVSYGI-------------GMEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGP---RADSEDTVRIQFKLQFFHVLQ----G 170
D EGR + ++ F L VY P R + R++++ F L+
Sbjct: 85 H--------DQEGRVITLEYEPFFLVTVYTPNSQRGLARLDYRMKWEDDFLAYLKTLEKS 136
Query: 171 RRIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223
+ I GDLN+A ID + +AG F E R F +L F D FR +
Sbjct: 137 KPIIFCGDLNVAHQEIDLKNPKTNKKNAG--FTSEE-RDKFSQVL---NHGFIDSFRFFY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHI 251
PE+R+AYT W A N G RID+
Sbjct: 191 PEQRDAYTWWSYMFNARANNAGWRIDYF 218
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 133/326 (40%), Gaps = 89/326 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + + ++FDAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFLEAFETFDADFFCLQETKLQAGQIELDL---PGYTQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P +AA G G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEP--------ALAAHYGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D+EGR + ++ F L Y P R D T F+ + Q + +
Sbjct: 86 ------DAEGRVITLEYPEFFLVTCYTPNAQNELRRLDYRMTWEDAFRAYLTDLKQQKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ GDLN+A ID + + KN E R F ++L F D FR +P+
Sbjct: 140 ILCGDLNVAHQNIDLKNWKTN-QKNAGFTPEEREKFSTLL---SAGFTDTFRYFYPDAEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKP 288
Y+ W A + N G RID+ + + DL D L+D K
Sbjct: 196 IYSWWSYRFNARKNNAGWRIDYFVVSD-------DLN------------DRLVDAK---- 232
Query: 289 GNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ T + GSDH PV + L
Sbjct: 233 ---------IHTEILGSDHCPVELQL 249
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T G I E
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSV------------------TYGLDIEEH------ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P++ +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFIDTYRYLYPDQED 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 121/273 (44%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LQRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RRIFVV-GDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ VV GDLN+A ID R +AG D + +F + L+ESG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLESG--FTDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ AY+ W A + N G RID+ + +
Sbjct: 189 FYPDLEHAYSWWSYRANARKNNTGWRIDYFIVS 221
>gi|218249629|ref|YP_002375040.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
gi|218164817|gb|ACK74878.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
Length = 255
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 140/332 (42%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + FIL N Y P + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLFYVENLADSLVCDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDL--ISPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + VNE +KR
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFI---------------------VNEF-----FKR 227
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
N K + ++ GSDH PV++ L +V
Sbjct: 228 ----NVE--KSLILDKVMGSDHCPVFLELADV 253
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 121/273 (44%), Gaps = 71/273 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRK-LLDSF---DADIICFQETKLRRQELKSDLVMADGYE 56
M+ V++NVNGLR +L+K ++SF DAD C QETK++ + DL GYE
Sbjct: 1 MRFVSWNVNGLR------AALKKGFMESFKELDADAFCLQETKMQEGQAILDL---PGYE 51
Query: 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLE 116
+F + GYSG A F R+K P++ G G+E
Sbjct: 52 QYFYSAE-----KKGYSGTAIFTRLK----------PLSVSYGI-------------GIE 83
Query: 117 DFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQ 169
+ D+EGR + + L VY P + + +R+ +++ F L+
Sbjct: 84 EH--------DNEGRVITMEFEDVYLVTVYTPNSKN-GLLRLDYRMVWEDAFRAFLLDLR 134
Query: 170 GRR-IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG +E R F +L F D FR+
Sbjct: 135 AKKPVVVCGDLNVAHTEIDLKNPKSNRRNAG---FTDEERGKFTELL---AAGFVDTFRA 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+P+ AYT W A + N G RID+ L +
Sbjct: 189 LYPDLTGAYTWWSYLRHARETNAGWRIDYFLVS 221
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 135/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSEGQLDLEL---KGYYQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
++ EGSDH PV + L
Sbjct: 235 ------------------SQTEGSDHCPVVLFL 249
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 121/268 (45%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNGLR + + L+SF DADI QETK++ + + DL GY+
Sbjct: 1 MKLISWNVNGLRACLG-----KGFLESFAALDADIFSIQETKMQPGQAELDL---PGYKQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F R++ P + V + +EE
Sbjct: 53 YWNSAE-----KKGYSGTAVFTRLE-PLN---VTYGIGSEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG------- 170
D EGR + + F L N Y P A E T R+ +++++ L+
Sbjct: 86 ---------DREGRAITLEFEDFYLVNCYVPNAQRELT-RLDWRMEWEDALRAYLLELDS 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPER 226
+ + GDLN+A ID +A + F R + L+E+G F D FR +P++
Sbjct: 136 RKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQLLEAG--FVDSFRHLYPDK 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ L +
Sbjct: 194 TGAYSWWSYMFHAREKNAGWRIDYFLVS 221
>gi|225024988|ref|ZP_03714180.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
gi|224942218|gb|EEG23427.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 54/273 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++ NVNG+R + + L + ADI+C QE K + +L + G +
Sbjct: 1 MRIISANVNGIRSAYKK--GFYEYLAASGADIVCIQELKAQEADLDDSMRAPHGMHGVWH 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
C + GYSGVA + + + P + G G+ +F
Sbjct: 59 CAE-----KRGYSGVALYSKRE----------PDRVQTGM-------------GIAEF-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED---TVRIQFKLQFFHVL-----QGRR 172
D+EGR V D G+ + ++Y P S + ++ +F F+ +L QGR
Sbjct: 89 ------DAEGRFVQVDFGNLSVISLYLPSGSSSEERQQLKFRFLAAFYPMLRELKTQGRD 142
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERRE 228
I + GD NIA ID + + + F R W ++VE G + D++R+ +PE
Sbjct: 143 IVICGDWNIAHQNIDLKNWKGNLKNSGFLPEEREWIGKVIVELG--WVDIWRTLYPE-MP 199
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
YT W A + G RID+ + A P L ++
Sbjct: 200 GYTWWSQRGQAYAKDVGWRIDYQM-ATPALAER 231
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/327 (25%), Positives = 135/327 (41%), Gaps = 85/327 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V++ +ADI C QETKL QE + ++ + + Y +++
Sbjct: 2 MKLISWNVNGLRACVNK--GFYDYFKEANADIFCLQETKL--QEGQIEMEIGEEYHQYWN 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R++ P S + GLE+
Sbjct: 58 YAE-----KKGYSGTAVFTRME-PLS------------------------VRYGLEE--- 84
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF-----FHVLQ---GRR 172
+ EGR + + F L VY P A D R+ ++L++ ++LQ +
Sbjct: 85 ----DHEPEGRVITLEFQDFYLVTVYTPNA-KRDLSRLDYRLEWEDRFRNYLLQLDAKKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRS-MLVESGGSFFDVFRSKHPERREAYT 231
+ V GDLN+A ID +A + + F R M F D +R +P++ +AYT
Sbjct: 140 VVVCGDLNVAHQEIDLKNAKSNRNNSGFTPEEREKMTSLLAAGFVDTYRYFYPDQTDAYT 199
Query: 232 CWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNA 291
W + N G RID+ L + A
Sbjct: 200 WWSFMPKVRERNIGWRIDYFLASERL---------------------------------A 226
Query: 292 PRWKG-GMSTRLEGSDHAPVYMCLGEV 317
P G G+ +++ GSDH PV + G++
Sbjct: 227 PSLLGAGIDSQVLGSDHCPVVLEFGKI 253
>gi|253688361|ref|YP_003017551.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754939|gb|ACT13015.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 272
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 118/272 (43%), Gaps = 56/272 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+V++N+NGLR R Q L +++ D+I QETK+ + V GY ++
Sbjct: 5 MKVVSFNINGLRARPHQ---LAAIIEQHQPDVIGLQETKVHDDMFPLEDVSQYGYHVYY- 60
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ G+ GVA C+ A P+A GF + + +I+ + DF+
Sbjct: 61 ------HGQKGHYGVALLCK----------AQPIAVRRGFPTDEDDAQRRII--MADFA- 101
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-TVRIQFKLQFFHVLQ---------G 170
T+HG F + N Y P+ +S D V+ K +F+ LQ
Sbjct: 102 --------------TEHGTFTIVNGYFPQGESRDHPVKFPAKTRFYQDLQTYLEQHHSAT 147
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE--------SGGSFFDVFRSK 222
+ + V+GD+NI+P +D G + K R S L E G D FR+
Sbjct: 148 QPLIVMGDVNISPTDLD-IGIGEENRKRWLRTGKCSFLPEEREWMARLQGWGLIDTFRAA 206
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+PE + ++ + + N G RID IL +
Sbjct: 207 NPESNDRFSWFDYRSAGFDDNRGLRIDLILAS 238
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLNEKKSV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E + R++ E G F D +R +P++
Sbjct: 141 VFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 116/265 (43%), Gaps = 54/265 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG R + + + + L + AD C QETKL+R ++ D AD + ++
Sbjct: 1 MKFISWNVNGFRA-LQRKMDVNEWLKNTGADAFCIQETKLQRSQV--DFQTADYLQYWY- 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GYSG A + K P+ G G+++F
Sbjct: 57 -----DAEKKGYSGTAIITKNK----------PLNVTYGI-------------GVDEF-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + ++ + L VY P A D R+ F+L+ F L R+
Sbjct: 87 ------DHEGRVITLEYEDYYLMTVYTPNA-QRDLKRLGFRLKWGQAFTNFIDRLDRRKP 139
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREA 229
+ GDLN+A AID + + F R S L+++G F D FR HP+R A
Sbjct: 140 VVFCGDLNVAHQAIDLKNPKSNMKNAGFTAEERQDFSELLDTG--FIDSFRYLHPDREGA 197
Query: 230 YTCWPSNTGAEQFNYGTRIDHILCA 254
Y+ W A N G RID+ + +
Sbjct: 198 YSWWSYMGNARARNVGWRIDYFVIS 222
>gi|218961468|ref|YP_001741243.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans]
gi|167730125|emb|CAO81037.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 256
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 137/331 (41%), Gaps = 94/331 (28%)
Query: 1 MKIV--TYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESF 58
MK++ ++NVNGLR +++ +++ DI+ QETKL+ ++ +L + Y +
Sbjct: 1 MKLLLWSWNVNGLRAALNK--GFIEIIQKEQPDILGIQETKLQEHQIPEELNTLNEYLIY 58
Query: 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDF 118
+S + R GYSG F ++ LP++ GF G +F
Sbjct: 59 WSHSL-----RKGYSGTGLFTKL----------LPLSFSTGF-------------GNPEF 90
Query: 119 SKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF----HVLQ----- 169
D+EGR I ++ FI FN+Y P +D R+ +KL+F+ V++
Sbjct: 91 --------DNEGRINIAEYTEFIFFNIYFPNGQKDDE-RLNYKLRFYDRCLEVMEEKRTS 141
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFR--SKH 223
G+ I V GD N A ID + + + F R W + E G + D FR K
Sbjct: 142 GKIILVGGDFNTAHHPIDLANPKENEKTSGFLPIERAWL-DKIAEMG--WIDTFRYFDKS 198
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDY 283
PE+ YT W T A N G R+D+ + H+
Sbjct: 199 PEQ---YTWWSYRTKARPRNVGWRLDYFWVNKEGIE-------------HIK-------- 234
Query: 284 KRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
K G+ +EGSDH PV++ L
Sbjct: 235 -----------KAGIRQDIEGSDHCPVFVEL 254
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 115/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T G I E
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSV------------------TYGLDIEEH------ 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P++ +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFIDTYRYLYPDQED 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 116/266 (43%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R + + LD F +AD C QETK + +++ L DGYE
Sbjct: 1 MKFISWNVNGIRACLG-----KGFLDFFHQIEADFFCIQETKCQAGQVELAL---DGYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F + P++ + G G ED
Sbjct: 53 YWNYAQ-----KKGYSGTAIFTK----------HTPLSVKYGV-------------GDED 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
S+D EGR + ++ F L NVY P A D R+ +L + L
Sbjct: 85 -SQD-------EGRIITLEYEDFYLVNVYTPNA-QRDLARLPLRLTWEEHLASYLQDLNS 135
Query: 171 RR-IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
++ + GDLN+A ID +A + + F R+ E S F D FR KHP +
Sbjct: 136 KKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGFVDSFRYKHPNETD 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
+T W + N G RID+ + +
Sbjct: 196 HFTWWSYMNKVRERNIGWRIDYFIVS 221
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 135/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAVK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|169787270|gb|ACA80074.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKI-------MEGLEDFSKDELL-------KIDSE 129
P+ AEEG TG+L S + + + + + L +DSE
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSE 109
Query: 130 GRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLN 180
GRCV+ + F+L Y P + D+ R F+L + L G+++ + GDLN
Sbjct: 110 GRCVVLEFLVFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGDLN 167
Query: 181 IAPAAIDRCDA 191
+ +D C+
Sbjct: 168 VIRDEMDTCNV 178
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 114/266 (42%), Gaps = 57/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R + + LD F +AD C QETK + +++ L D YE
Sbjct: 1 MKFISWNVNGIRACLG-----KGFLDFFHQIEADFFCIQETKCQAGQVELAL---DDYEQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + + GYSG A F + +P S +M G+ D
Sbjct: 53 YWNYAQ-----KKGYSGTAIFTK-HTPLS------------------------VMYGVGD 82
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG------- 170
+ EGR + ++ +F L NVY P A D R+ +L + L G
Sbjct: 83 EDSQD------EGRIITLEYQNFYLVNVYTPNA-QRDLARLPLRLTWEDRLAGYLQDLNS 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGS-FFDVFRSKHPERRE 228
+ + GDLN+A ID +A + + F R+ E S F D FR KHP +
Sbjct: 136 KKPVVYCGDLNVAHTEIDLKNAKSNVGNSGFTYEERAKFSELLASGFVDSFRYKHPNETD 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
+T W + N G RID+ + +
Sbjct: 196 HFTWWSYMNKVRERNIGWRIDYFIVS 221
>gi|82703533|ref|YP_413099.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82411598|gb|ABB75707.1| Exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 277
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 119/275 (43%), Gaps = 65/275 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI T+NVN L+ R+ Q + + L D++C QETKL+ + + A GY++ +S
Sbjct: 1 MKIATWNVNSLKVRLPQ---VLEWLTLNQPDVLCLQETKLQDEHFPVSEIAAAGYQTIYS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G+ Y+GVA R P S E FTG M G ED K
Sbjct: 58 -------GQKTYNGVALLSR--QPVS-----------EVFTG---------MPGFEDPQK 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG---------R 171
LL + CV+ +Y P + + + Q+KL++ L+ R
Sbjct: 89 -RLLGGVHDDVCVVC---------IYVPNGEHVTSEKYQYKLRWLAALREWLREMLSRHR 138
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRS-KHPER 226
++ V+GD NIAP D D+ K F R FR +L F D FR PE+
Sbjct: 139 KLVVLGDFNIAPEDCDVHDSKLWEGKVLFSELERAAFREVL---DLGFIDSFRLFDQPEK 195
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHIL----CAGPC 257
++T W A + N G RIDHIL AG C
Sbjct: 196 --SFTWWDYRMMAFRRNMGLRIDHILLSRELAGMC 228
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 131/287 (45%), Gaps = 68/287 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ ++ ++ DAD C QETK++ +L + DGYES+++
Sbjct: 1 MKFISWNVNGLRACVTK--GFKESFEAIDADFFCLQETKMQAGQLD---IAFDGYESYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + P + T GL G+E+
Sbjct: 56 YAE-----KKGYSGTAIFTK-HQPLNVT------------YGL----------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQFFHVLQ--------GR 171
D EGR + + +F L Y P +S+D + R+++++++ Q +
Sbjct: 86 ------DHEGRVITLEMENFYLVTCYTP--NSQDGLKRLEYRMRWEDDFQTYIKRLDEKK 137
Query: 172 RIFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKH 223
+ V GDLN+A ID R +AG F+ E R+ + + G F D FR+ +
Sbjct: 138 PVIVCGDLNVAHEEIDLKNPKTNRKNAG--FSDEE-----RAKMTQFLGKGFIDSFRTLY 190
Query: 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
PE+ Y+ W A + N G RID+ L + Q D + H V
Sbjct: 191 PEQV-TYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTEV 236
>gi|218781643|ref|YP_002432961.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
gi|218763027|gb|ACL05493.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 57/264 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K V++NVNG+R V + G ++ F+ADI+ QET+ +++L DL+ Y S++
Sbjct: 2 LKFVSWNVNGIRA-VEKKG-FTDMVKDFNADILAIQETRALKEQLSEDLINIADYTSYWF 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV+ + + ++P +M G++
Sbjct: 60 SAE-----KKGYSGVSVYTK-QTPLD------------------------VMYGMDSPEH 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRR 172
D+EGR + ++ F L NVY P A + VR+ +KL F L + +
Sbjct: 90 ------DAEGRVITLEYDDFYLMNVYFPNAQPK-LVRLDWKLGFNQTLHKFANALGEKKS 142
Query: 173 IFVVGDLNIAPAAID-----RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD N+A ID + + P ++ E R W + G + D FR + E
Sbjct: 143 VVLCGDYNVAHKPIDLANPKQNEQNPGYSPEE-RAWMDEFI---GSGYVDAFRMFNQE-P 197
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHI 251
+ YT W A N G RID+
Sbjct: 198 DNYTWWSYRFNARAKNIGWRIDYF 221
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 118/270 (43%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLEYRMKWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F +L E F D +R +P
Sbjct: 137 KKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ AY+ W GA N G R+D+ + +
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 126/283 (44%), Gaps = 66/283 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + S DAD C QETK++ +L DL +GY+S+++
Sbjct: 1 MKLISWNVNGLRACVGK--DFETSFKSLDADFFCLQETKMQAGQL--DLAF-NGYQSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+DK GYSG A F + ++P + T G I E
Sbjct: 56 Y---ADK--KGYSGTAIFTK-QTPLNV------------------TYGMGIDEH------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + +F L VY P + E R++++++ + L R+
Sbjct: 86 ------DHEGRVITLETENFFLVTVYTPNSQDE-LRRLEYRMRWEDDFKAYLLALDARKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHP 224
+ V GD+N+A ID R +AG F E R + E G F D FR+ +P
Sbjct: 139 VIVCGDMNVAHEEIDIKNPKTNRRNAG--FTDEE-----REKMTELLAGGFIDTFRTLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
E + Y+ W A + N G RID+ L + + D + H
Sbjct: 192 E-QVTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIH 233
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 63/282 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + ++ DADI C QETK +++ DL GY +++
Sbjct: 1 MKLISWNVNGIRACLKK--GFMEYFEAQDADIFCLQETKCSAGQVELDL---KGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPIS---VSYGLGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + VY P R D +F+ + + + +
Sbjct: 86 ------DQEGRVITLEFEDFYMVTVYTPNSKNELERLDYRMVWEDEFRSYLAKLNEAKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
V GD+N+A ID R +AG D +++F + L+++G F D FR +P+
Sbjct: 140 VVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKF-----TELLKAG--FTDSFRYLYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
R AY+ W A + N G RID+ + + Q + + H
Sbjct: 193 RLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 121/279 (43%), Gaps = 64/279 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S + DI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NTDIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F R + P+A G G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTRKE----------PIAVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F ++L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTNILEEG---FVDTYRFLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITD 231
>gi|374375042|ref|ZP_09632700.1| exodeoxyribonuclease III Xth [Niabella soli DSM 19437]
gi|373231882|gb|EHP51677.1| exodeoxyribonuclease III Xth [Niabella soli DSM 19437]
Length = 265
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 127/330 (38%), Gaps = 92/330 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+I++YNVNG+R + + L + ADIIC QETK + + +L + GY ++
Sbjct: 10 MRIISYNVNGIRAAIKK--GFIDWLKTDPADIICLQETKASVENVDKELFESLGYTGYWF 67
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGV+ F ++ ++ +G ++
Sbjct: 68 SAQ-----KKGYSGVSVFTKIPP-----------------DNIIYGTGHQVS-------- 97
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL----QFFHVLQGR----- 171
D EGR + D G L N Y P S + VR FK +F+ LQ
Sbjct: 98 ------DEEGRVIQLDFGAVRLINAYFPSGTSGE-VRQGFKYIWLDEFYTYLQELKNKHP 150
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
R+ + GD NIA AID D P KN E R W L F D FR HPE
Sbjct: 151 RLVLCGDYNIAHEAIDIHD--PKGNKNSSGFLPEEREWMTKFL---KNGFNDTFRLLHPE 205
Query: 226 RREAYTCWPSNTGAEQF-NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
Y+ W + + N G RID+I ++ V E DI D K
Sbjct: 206 EAHRYSWWSQRFPSVRLNNKGWRIDYITVTDALKNK-------------VVEADIYPDVK 252
Query: 285 RWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
SDH PVY+ L
Sbjct: 253 H-------------------SDHCPVYLKL 263
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRTYIK----QLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E + R ++E G F D +R +P
Sbjct: 137 KKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ AY+ W GA N G R+D+ + +
Sbjct: 193 NQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+++EGSDH PV + L
Sbjct: 235 ------------------SQIEGSDHCPVVLFL 249
>gi|395645806|ref|ZP_10433666.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
gi|395442546|gb|EJG07303.1| exodeoxyribonuclease III [Methanofollis liminatans DSM 4140]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 113/266 (42%), Gaps = 55/266 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
M+++++NVNG+R V + G + D DI+C QETK + ++ ++ GY ++FS
Sbjct: 1 MRLLSWNVNGIRS-VHKKGFCKWFGDE-SPDILCIQETKAQEDQIPPEIRSPPGYHAYFS 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSGVA F R + P++ F G
Sbjct: 59 SAM-----RKGYSGVALFSREE----------PISITRDFDG------------------ 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
+ EGR +I ++ F LF++Y P S R+ +K+ F+ +GR
Sbjct: 86 ----RFGDEGRIIIAEYQAFTLFDIYFPNGKSSPE-RLAYKMAFYDAFLSSVRGMNEEGR 140
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSML---VESGGSFFDVFRSKHPERRE 228
+ V GD+N A AID + + F R+ L +ESG D FR E
Sbjct: 141 SVVVCGDVNTAHQAIDLARPKENVKISGFLPEERAALDLWIESG--LVDTFRFFTAEGGH 198
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
YT W T A N G RID+ +
Sbjct: 199 -YTYWDLKTRARDRNVGWRIDYFFVS 223
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 126/283 (44%), Gaps = 63/283 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG R + + +S +ADI C QE K++ ++ +D + +GY +
Sbjct: 1 MKLISWNVNGYRAVMKK--GFMDAFNSLNADIFCLQEIKMKENQM-TDEMNIEGYHRY-- 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSG + +V+ P+ G G+++
Sbjct: 56 ---SYSANKAGYSGTLVYTKVE----------PIGVSFGI-------------GIDEH-- 87
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + ++ F L NVY P + + R+ +++ + ++L+ R+
Sbjct: 88 ------DTEGRVITCEYEDFFLVNVYTPNS-KQKLERLDYRMVWEDEFHNYLNILRDRKP 140
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R AG D +N+ S+L+ G + D FR +P
Sbjct: 141 VIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKM-----SLLLNDG--YIDTFRYFYP 193
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
++ + Y+ W A + N G RID+ + + D + H
Sbjct: 194 DKTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH 236
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 72/299 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A +D + P F+ E R F +L E+G F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 275
++ AY+ W GA N G R+D+ + + H+ D + H V H+N
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEIMGSDHCPVELHIN 251
>gi|167521904|ref|XP_001745290.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776248|gb|EDQ89868.1| predicted protein [Monosiga brevicollis MX1]
Length = 263
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 52/280 (18%)
Query: 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFF 59
+ +V++NVNGLR + +L L+ + + D++ QETKL+ + + GY +
Sbjct: 1 LHVVSWNVNGLRAVLKNHPKALPDLVQAENPDLLFLQETKLQASHVADYANLLPGYTGLW 60
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
SC+R + GYSG A G T + + G++
Sbjct: 61 SCSR----AKKGYSGTA----------------------GATPTSDFRALSVQYGIKSAH 94
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHV--------LQGR 171
D+ EGR + + + VY P + +D R+ ++L ++V L+
Sbjct: 95 HDQ------EGRTITVELPDLFVIGVYVPNS-GQDLKRLDYRLNEWNVDFLAYIRELEAS 147
Query: 172 R-IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + VVGDLN+A +D +AG K+ + R F L + F D FR +PE
Sbjct: 148 KPVLVVGDLNVAHLDLDIYNAG-HLVKSAGCTPQERTAFTEFLDQG---FTDTFRKLYPE 203
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ 265
A+T W + TG Q + G R+D+ +C+ L L+
Sbjct: 204 HTGAFTYWSARTGGRQDSKGLRLDYAVCSNALLEANSPLR 243
>gi|403365259|gb|EJY82409.1| Exonuclease III [Oxytricha trifallax]
Length = 645
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/349 (26%), Positives = 138/349 (39%), Gaps = 93/349 (26%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKS---DLVMADGYES 57
+ I +N+NGL Q V G L L D DI+CF E K +++KS + YE
Sbjct: 75 LNIWVWNINGL-QAVINKGMLDVFLQGEDPDIVCFNEIKTDPEKIKSASFHTKIPKDYEQ 133
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++C+ K + GYSG ++K +V + EE
Sbjct: 134 YWNCS----KSKKGYSGTGLITKIK----PIKVTFDIGIEEH------------------ 167
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-----FFHVLQGRR 172
D EGR + + F+L VY P + +D R+ ++ Q FF L R
Sbjct: 168 ---------DQEGRVITAEFSKFVLVAVYVPNS-GDDLRRLSYRTQEWDKAFFDYLDRTR 217
Query: 173 I------FVVGDLNIAPAAIDRCDA-GPDFA---KNEFRIWFRSMLVESGGSFFDVFRSK 222
I + GDLN+A +D D G D E R F S + + D FR
Sbjct: 218 IETNKPLILTGDLNVARNELDVFDTKGKDKVACYTPEERKSFESFI---NRGYIDTFRHL 274
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P++RE YT + + + N G RID+ + +HQ D+ VT H D
Sbjct: 275 YPDKRE-YTYFSARFNNKVTNKGWRIDYFV-----VHQ-DDINMVTDVTIHK-------D 320
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPV--YMCLGEVPEIPQHSTPSLA 329
Y GSDH PV ++ L ++ E + T LA
Sbjct: 321 YN-------------------GSDHVPVCLHLDLSKIKETKPNDTKLLA 350
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLNEKKSV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E + R++ E G F D +R +P++
Sbjct: 141 VFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREQFTRTL--EEG--FVDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|225552135|ref|ZP_03773075.1| exodeoxyribonuclease III [Borrelia sp. SV1]
gi|225371133|gb|EEH00563.1| exodeoxyribonuclease III [Borrelia sp. SV1]
Length = 255
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 90/330 (27%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL++ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIL-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 KSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + FIL N Y P + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI----WFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD NIA ID + + I W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDLISPDSNRESPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP--- 195
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWK 287
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL------- 235
Query: 288 PGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 ------------DKVMGSDHCPVFLELADV 253
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + ++ DADI C QETK +++ DL GY +++
Sbjct: 1 MKLISWNVNGIRACLKK--GFMEYFEAQDADIFCLQETKCSAGQVELDL---KGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAV-----KKGYSGTAIFTK-KEPIS---VSYGLGIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + VY P R D +F+ + + + +
Sbjct: 86 ------DQEGRVITLEFEDFYMVTVYTPNSKNELERLDYRMIWEDEFRSYLAKLNEAKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
V GD+N+A ID R +AG +E R F +L F D FR +P+R
Sbjct: 140 VVCGDMNVAHEEIDLKNPKTNRRNAG---FTDEERTKFTELL---KAGFTDSFRYLYPDR 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSH 267
AY+ W A + N G RID+ + + Q + + H
Sbjct: 194 LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIH 234
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRENPGFSDEE-REKFSCILEE---GFIDTYRYLYPNQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 130/299 (43%), Gaps = 72/299 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A +D + P F+ E R F +L E+G F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVL-EAG--FIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQ--------SHNFVTCHVN 275
++ AY+ W GA N G R+D+ + + H+ D + H V H+N
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVMGSDHCPVELHIN 251
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 118/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLNEKKSV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E + R++ E G F D +R +P++
Sbjct: 141 VFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTL--EEG--FVDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 122/279 (43%), Gaps = 64/279 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQID---LNPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFTK-KEPISVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFDDFYMITLYTPNSKRGLERLDYRMEWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A +D + P F+ E R F +L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEE-REKFTCVLEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
++ AY+ W GA N G R+D+ + + H+ D
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITD 231
>gi|431779197|ref|ZP_19567393.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
gi|430642462|gb|ELB78239.1| exodeoxyribonuclease III (xth) [Enterococcus faecium E4389]
Length = 250
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 116/264 (43%), Gaps = 53/264 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V++ + ++ DAD C QETKL+ ++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVNK--NFLEVFHELDADFFCLQETKLQAGQIDLDL---PGYYQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + ++ + + +
Sbjct: 56 YAE-----RKGYSGTAIFAKKPALNATYGMGIDIH------------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQGRR----I 173
D+EGR + ++ F L Y P + SE R++++ F++ L+ + +
Sbjct: 86 ------DTEGRLITLEYSDFFLVTCYTPNSQSELKRLDYRLEWEETFYNYLENLKKQKPV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFR---SMLVESGGSFFDVFRSKHPERREAY 230
V GDLN+A ID + + F R S L+++G F D FR +P + Y
Sbjct: 140 IVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNG--FIDTFRYFYPTQEGVY 197
Query: 231 TCWPSNTGAEQFNYGTRIDHILCA 254
+ W + + N G RID+ L +
Sbjct: 198 SWWNYRFNSRKNNAGWRIDYFLTS 221
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKDGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P++
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFVDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 119/270 (44%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL+ ++ + +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKLQSGQIDLN---PEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFMK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R + ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYMITLYTPNSKRGLERLDYRMEWEDDFRTYIK----QLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E + R ++E G F D +R +P
Sbjct: 137 KKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FVDTYRHLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ AY+ W GA N G R+D+ + +
Sbjct: 193 NQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 101/332 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L DL GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSEGQLDLDL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-EEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMITVYTPNSKDE-LQRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
++ + V GDLN+A ID R +AG +E R F +L F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAG---FTDEERGKFTELL---AAGFTDTFRHF 189
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282
+P+ AY+ W A + N G RID+ + + D + H
Sbjct: 190 YPDLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIH--------------- 234
Query: 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+ EGSDH PV + L
Sbjct: 235 -----------------AQTEGSDHCPVVLFL 249
>gi|399573806|gb|AFP49242.1| DNA lyase, partial [Colletotrichum sp. JAC-2012b]
Length = 228
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 36/180 (20%)
Query: 35 FQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV 94
QETK++R++L+ D+V+ G++ FS K + GYSGVA + R P+
Sbjct: 1 MQETKIQRKDLQDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR-------NATCCPI 49
Query: 95 AAEEGFTGLLETSGSKI-------MEGLEDFSKDELLK-------IDSEGRCVITDHGHF 140
AEEG TG+L S + + + + + L +DSEGRCV+ + F
Sbjct: 50 RAEEGITGILPAPNSSTSFRDLPEAQQIGGYPRPDQLPGEVDEATLDSEGRCVVLEFPAF 109
Query: 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA 191
+L +Y P + D+ R F+L++ + L G+++ + GDLN+ +D C+
Sbjct: 110 VLIGIYSPA--TRDSSRDDFRLEYLNALDARVRNLVAAGKQVILTGDLNVIRGEMDTCNV 167
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 119/270 (44%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + + P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-EEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R ED R+ K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRVYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F +L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ AY+ W GA N G R+D+ + +
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 121/270 (44%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + +AD C QETK++ +L + +GY S+++
Sbjct: 2 LKFISWNVNGLRACYDK--GFVDVFHRLEADFFCLQETKMQEGQLDAKF---EGYHSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P++ G G+E+
Sbjct: 57 YAE-----KKGYSGTAIFSKVK----------PLSVTYGL-------------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + F L VY P + E+ R+ ++++ + L+ ++
Sbjct: 87 ------DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKKLEEKKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R +AG D + +F + L+ESG F D FR +P
Sbjct: 140 VIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERTKF-----TTLLESG--FTDTFRYFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
E+ Y+ W A + N G RID+ L +
Sbjct: 193 EQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 118/266 (44%), Gaps = 58/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K+ ++NVNG+R + + G + L DI QETK +L ++ +GY S+F
Sbjct: 97 LKLCSWNVNGVRAWLGKEG--LEYLKKEQPDIFAIQETKCSDSKLPPEMKSVEGYHSYFL 154
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGVA ++K P+ + G G+E
Sbjct: 155 AG-----DQEGYSGVALLAKIK----------PLDVKYGI-------------GME---- 182
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
K D EGR + + F L VY P A + VR+ ++++ + L+ ++
Sbjct: 183 ----KHDKEGRVITAEFDKFYLVAVYVPNA-GKKLVRLDYRMEWDKDFRAYLKELEAKKH 237
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAK------NEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD+N+A ID A P K E R F ++L ESG F D FR +P++
Sbjct: 238 VVLCGDMNVAHQEIDL--ANPKTNKKNAGFTQEERDGFTALL-ESG--FVDSFRHLYPDK 292
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHIL 252
+ AYT W A N G R+D+ +
Sbjct: 293 KGAYTFWTYMMNARAKNVGWRLDYFI 318
>gi|68490863|ref|XP_710758.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|68490945|ref|XP_710720.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|46431957|gb|EAK91472.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
gi|46431999|gb|EAK91510.1| potential DNA repair apurinic/apyrimidinic endonuclease Apn2p
[Candida albicans SC5314]
Length = 451
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 151/401 (37%), Gaps = 128/401 (31%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLRKLLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ ++ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEV-----ALPVAAEEGFTGLL 104
V Y+SF S T + GYSGV F R +P S+ + AEEG TG L
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIR--NPKSNENKKHRKHLTVIKAEEGITGWL 137
Query: 105 -------ETSGSKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVYGP 148
+S +KI + G D K L +DSEGRCV + + ++F VY P
Sbjct: 138 PSSSSSSSSSANKIPYRESANNIGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVYCP 197
Query: 149 RADSEDTVRIQ-FKLQFFHVLQGR-----------RIFVVGDLNIAPAAIDRCDA----- 191
A+S+ T + F+L F +L R +I ++GD+NIA ID +
Sbjct: 198 -ANSQCTYDGELFRLTFIKLLLQRCYNLVKLYPQKKIVIMGDINIAIDMIDHAETIELGI 256
Query: 192 -----GPDFAKNEFRIW----------------------FRSMLVESGGS---------- 214
P F + F + RS+ +
Sbjct: 257 KENLLKPSFRGHNFEVLNYENCVSFRTATEARKLLNKYVIRSIWQDLKNEKNPNQKEREK 316
Query: 215 ----FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
+D R R + YT W + T A Q N+G+RID IL + + Q
Sbjct: 317 EEPFLYDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLILFSDEKMVQ---------- 366
Query: 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
+ NA W M GSDH PV+
Sbjct: 367 ----------------RISNADIWPFLM-----GSDHCPVF 386
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRENPGFSDEE-REKFSCILEE---GFIDTYRYLYPNQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|255013539|ref|ZP_05285665.1| exodeoxyribonuclease [Bacteroides sp. 2_1_7]
gi|410103604|ref|ZP_11298525.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
gi|409236333|gb|EKN29140.1| exodeoxyribonuclease III (xth) [Parabacteroides sp. D25]
Length = 253
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 115/268 (42%), Gaps = 58/268 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKI+TYN NGLR V + L + L D++C QETKL+ + ++ A GY+S+
Sbjct: 1 MKIITYNTNGLRAAVGK--GLPEWLAQEQPDVLCIQETKLQPDQFPAETFEALGYKSYLF 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ + GYSGVA + + P E G G+E +
Sbjct: 59 SAQ-----KKGYSGVAILTKQE----------PDHVEYGM-------------GIERY-- 88
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D+EGR + D G + +VY P S D R FK+ ++ LQ R
Sbjct: 89 ------DNEGRFIRADFGDLSVVSVYHPSGTSGDE-RQDFKMVWLEDFQKYVVELQKSRP 141
Query: 173 -IFVVGDLNIAPAAIDRCDAGPDFAKN-----EFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ + GD NI ID D + AKN E R W L F D FR +PE+
Sbjct: 142 NLILCGDYNICHEPIDIHDPIRN-AKNSGFLPEEREWMTRFL---SAGFIDTFRLLNPEK 197
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
+E YT W + N G RID+ + +
Sbjct: 198 QE-YTWWSYRFNSRAKNKGWRIDYCMVS 224
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFSCILEE---GFIDTYRYLYPNQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 136/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
+++EGSDH PV + L
Sbjct: 235 ------------------SQIEGSDHCPVVLFL 249
>gi|424033139|ref|ZP_17772555.1| exodeoxyribonuclease III [Vibrio cholerae HENC-01]
gi|424037966|ref|ZP_17776644.1| exodeoxyribonuclease III [Vibrio cholerae HENC-02]
gi|408875218|gb|EKM14372.1| exodeoxyribonuclease III [Vibrio cholerae HENC-01]
gi|408894932|gb|EKM31484.1| exodeoxyribonuclease III [Vibrio cholerae HENC-02]
Length = 268
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 122/282 (43%), Gaps = 62/282 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++N+NGLR R+ Q L+ L+D D+I QE K+ + D V A GY+ +F
Sbjct: 1 MKVISFNINGLRARLHQ---LQALIDKHQPDVIGLQEIKVHDEAFPIDDVEAMGYKVYFH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGF-TGLLETSGSKIMEGLEDFS 119
G+ + GVA C+ + P++ ++GF T E IM E
Sbjct: 58 -------GQKAHYGVAMLCKQE----------PISVQKGFPTDNEEHQKRMIMATFE--- 97
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADS-EDTVRIQFKLQFF---------HVLQ 169
D G V +G+F P+ D+ + +K QF+ H
Sbjct: 98 -------DENGEKVTVLNGYF-------PQGDNVAHETKYPYKRQFYKDLMTYLNDHHTN 143
Query: 170 GRRIFVVGDLNIAPAAIDRCDAGPDFAK----------NEFRIWFRSMLVESGGSFFDVF 219
++ V+GD+NI+P D P+ + E R W +++L F D F
Sbjct: 144 DEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEEREWLQTLL---DWGFEDTF 200
Query: 220 RSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
R+ HPE + ++ + + N G RID IL A P L +K
Sbjct: 201 RNLHPEVDDRFSWFDYRSRGFDDNRGLRIDVIL-ATPSLAEK 241
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 135/333 (40%), Gaps = 103/333 (30%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R + + LD F+ ADI C QETKL +L +L GY
Sbjct: 1 MKLISWNVNGIRAAIK-----KGFLDYFNEQNADIFCLQETKLSAGQLDLEL---KGYHQ 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + GYSG A F + + P S V+ + EE
Sbjct: 53 YWNYAE-----KKGYSGTAIFTK-QEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQG 170
D EGR + + F + VY P + E +R+ +++ ++ L+
Sbjct: 86 ---------DKEGRVITLEFEKFYMVTVYTPNSKDE-LLRLDYRMVWEDEFRKYLKNLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + GDLN+A ID R +AG D + +F + L++SG F D FR
Sbjct: 136 KKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKF-----TELLDSG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILI 281
+P + Y+ W A + N G RID+ + + D + H
Sbjct: 189 FYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH-------------- 234
Query: 282 DYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314
T++EGSDH PV + L
Sbjct: 235 ------------------TQIEGSDHCPVVLFL 249
>gi|399020091|ref|ZP_10722231.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
gi|398096101|gb|EJL86430.1| exodeoxyribonuclease III [Herbaspirillum sp. CF444]
Length = 258
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 109/269 (40%), Gaps = 56/269 (20%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
KIV+ N+NG+R + + + AD IC QE K + ++ + + GY F
Sbjct: 3 KIVSANLNGIRSAAKK--GFFEWMAKESADFICVQELKAQEADMTEEFLTPKGYVGHFHY 60
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSGV + + K P A GF G ++F
Sbjct: 61 AE-----KKGYSGVGLYSKRK----------PDAVRIGF-------------GTKEF--- 89
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGRR 172
D EGR V D G + ++Y P S + R Q K +F V GR
Sbjct: 90 -----DDEGRYVECDFGDITVISLYCPSGSSSEE-RQQAKFRFMEVFLPHLQELKDSGRE 143
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR- 227
I + GD NIA ID + + + F R W + E G DV+R+ HPE
Sbjct: 144 IVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTRVFDELG--LVDVYRTIHPETTG 201
Query: 228 EAYTCWPSNTGAEQFNYGTRID-HILCAG 255
+AYT W + A N G RID HI AG
Sbjct: 202 DAYTWWSNRGQAWANNVGWRIDYHIATAG 230
>gi|358639330|dbj|BAL26627.1| exodeoxyribonuclease III [Azoarcus sp. KH32C]
Length = 263
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 57/274 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADG-YESFF 59
++++T N+NG+R S+ L + DAD++C QE K + +L +D++ A G + +F
Sbjct: 2 LRVITLNLNGIRSAASK--GFYDWLAAQDADVVCLQELKAQHPDL-TDVMRAPGDFAGYF 58
Query: 60 SCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFS 119
+ GYSGV + R ++P +++EGL
Sbjct: 59 HPAE-----KKGYSGVGLYTR-RTP------------------------DRVVEGL---- 84
Query: 120 KDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QG 170
+ ID+EGR + D G + ++Y P S + R+Q K F G
Sbjct: 85 --GIADIDAEGRFLQLDFGPLSIVSLYLPSGSSSEE-RLQIKFGFMERFLPHMAALRASG 141
Query: 171 RRIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPER 226
R + V GD NIA +D + + + F R W ++ E G + DV+R HP+
Sbjct: 142 REVIVCGDWNIAHKEVDLKNWKSNQKNSGFLPEERAWLTRVIDEQG--WVDVYRRLHPDT 199
Query: 227 REA-YTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259
+A YT W + A N G R+D+ + H
Sbjct: 200 TDACYTWWSNRGQAWAKNVGWRLDYQIATPGVAH 233
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 125/288 (43%), Gaps = 69/288 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK +++NVNG+R V+ + LD F DADI C QETKL+ +L DL E
Sbjct: 40 MKFISWNVNGIRACVN-----KGFLDYFHAADADIFCLQETKLQEGQLALDL------EG 88
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+F ++K GYSG A F + + P S + L + A
Sbjct: 89 YFQYWNYAEK--KGYSGTAVFTK-EEPLSVS-YGLGIEAH-------------------- 124
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQG---- 170
D EGR + ++ F VY P + SE R++++ F L G
Sbjct: 125 ---------DQEGRVITLEYETFYFVTVYTPNSQSELKRLDYRMEWEDDFRAYLTGLDRE 175
Query: 171 RRIFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222
+ + V GD+N+A ID R +AG D + +F + L++SG + D +R
Sbjct: 176 KPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEERQKF-----TELLDSG--WIDTWRYF 228
Query: 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
+P++ Y+ W A + N G RID+ L + + D + H V
Sbjct: 229 YPDQEGVYSWWSYRFKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEV 276
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 48/262 (18%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI T+NV+G+R + + G L+ DADII QETK +++ D V GY +F
Sbjct: 140 IKICTWNVSGIRAVLKKNGMT--YLEREDADIIALQETKCETKKI-PDEVKLKGYTRYF- 195
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY G+A + + K P I GL++
Sbjct: 196 ----LDSKKAGYCGMALYSK-KEPID------------------------ISMGLDE--- 223
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQFKLQFFHVLQG----RRI 173
+ D EGR + ++ HF L NVY P A ++ R+++ F +Q + +
Sbjct: 224 ----EFDDEGRLITAEYEHFYLVNVYVPNAGNKLVTLPKRLKWNEAFKKHIQDLDKKKPV 279
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
+ GD+N+A ID + + F R + + F D FR +P++ +AYT
Sbjct: 280 IICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLQAGFVDTFRLLYPDKTDAYTF 339
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ + +
Sbjct: 340 WAYFNNARSKNIGWRLDYYIVS 361
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 60/274 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK V++NVNGLR V + G + +FDAD C QE KL+ +++ + DGY +++
Sbjct: 1 MKFVSWNVNGLRA-VREKG-FEDIFKNFDADAFCLQEIKLQENQIE---LHFDGYYEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + + K P+ G G+E+
Sbjct: 56 YA-----NKKGYSGTAIYTKHK----------PIDVHYGL-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D EGR + ++ ++ + VY P A E R+ ++ ++F L ++
Sbjct: 86 ------DMEGRLITLEYENYYIATVYTPNAQPE-LARLAYRQKWEEDFREYFKKLDEKKP 138
Query: 173 IFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227
+ + GD+N+A ID + P F+ E + ++L+ +G F D FR +P++
Sbjct: 139 VIICGDMNVAHQEIDLKNPKNNRKNPGFSDEEREKF--TLLLNAG--FIDTFRYFYPDKT 194
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ Y+ W A + N G RID+ C L +K
Sbjct: 195 DEYSWWSYRFNARKNNAGWRIDY-FCVSDRLKEK 227
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 133/300 (44%), Gaps = 67/300 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + + DAD C QETK++ +L + GYES+++
Sbjct: 1 MKLISWNVNGLRACVGK--DFEQQFKDLDADFFCIQETKMQDGQLD---ISFPGYESYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S V+ + EE
Sbjct: 56 YAE-----KKGYSGTAIFTKHK-PLS---VSYGIDIEEH--------------------- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV-RIQFKLQ-------FFHVLQGRR 172
D EGR + + F L VY P +S+D + R++++++ + H L ++
Sbjct: 86 ------DHEGRVITLEMDDFFLVTVYTP--NSQDGLRRLEYRMKWEDDFQAYLHKLDAKK 137
Query: 173 -IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GD+N+A ID R +AG F E + L+ +G F D FRS +P
Sbjct: 138 PVIVCGDMNVAHEEIDIKNPKTNRRNAG--FTDEEREK--MTQLLNNG--FIDTFRSLYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
E+ Y+ W A + N G RID+ L + + D + H + + C + +D K
Sbjct: 192 EQV-TYSWWSYRFRARERNTGWRIDYFLISDRLKDRLVDAKIHTEIMGS-DHCPVEVDLK 249
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 124/276 (44%), Gaps = 64/276 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNG+R +++ DADI C QETK ++ +++ +L GY +++
Sbjct: 1 MKCISWNVNGIRACITK--GFEDRFRELDADIFCLQETKCQQGQVELEL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
R GYSG A F + + P++ + G G+E+
Sbjct: 56 YA-----NRRGYSGTAVFTKKE----------PISVKNGI-------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQF--------FHVLQGRR 172
D EGR + + F VY P + SE R+++++++ + + +
Sbjct: 86 ------DKEGRVITLEFKEFYFVTVYTPNSQSE-LRRLEYRMEWERDFLAYLLKLQESKP 138
Query: 173 IFVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ GDLN+A ID R +AG +E R F +L ESG F D FR +P+
Sbjct: 139 VICCGDLNVAHEEIDLKNPKTNRKNAG---FTDEERACFTKVL-ESG--FIDTFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+ Y+ W A + N G RID+ + + P L +K
Sbjct: 193 KEGIYSWWSYRFKAREKNAGWRIDYFITS-PSLKEK 227
>gi|387826172|ref|YP_005805625.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
gi|312147931|gb|ADQ30590.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
Length = 255
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL+ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIF-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + FIL N Y P + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLNFLSYVENLADSLVCDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDL--ISPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ + +ADI C QE+K+ +++ + + Y+ +++
Sbjct: 1 MKLISWNVNGLRACMNK--GFMDFFNEVNADIFCIQESKMCKEQAQFHF---ENYKEYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + + + VA + G T
Sbjct: 56 SAE-----KKGYSGVVILSKTQ--------PINVAYDMGIT------------------- 83
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + ++ HF L NVY P + E R+ ++++ F L+ +
Sbjct: 84 ----YHDKEGRIITAEYPHFYLVNVYTPNSKRE-LERLDYRMKWEDDFRAFVKNLENHKS 138
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID R +AG D +N+ S L+++G F D FR +P
Sbjct: 139 VIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKM-----SALLDAG--FIDTFRYFYP 191
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W A + N G RID+ LC+
Sbjct: 192 TLTGAYSWWSYMGKARENNTGWRIDYFLCS 221
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 72/280 (25%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF---DADIICFQETKLRRQELKSDLVMADGYES 57
MK++++NVNG+R V + LD F DADI C QETK++ +L +L Y +
Sbjct: 1 MKLISWNVNGIRACVQ-----KGFLDFFHEADADIFCIQETKMQEGQLNLELERYHQYWN 55
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+ + GYSG A F + K P S V+ + EE
Sbjct: 56 Y--------AVKKGYSGTAVFTK-KEPLS---VSYGLGIEEH------------------ 85
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQG 170
D EGR + + F VY P + SE R+ ++++ + L+
Sbjct: 86 ---------DQEGRVITCEFEDFYFVTVYTPNSQSE-LARLDYRMKWEDDFRAYLKKLEK 135
Query: 171 RR-IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRS 221
++ + V GDLN+A ID R +AG D + +F + L+++G F D FR
Sbjct: 136 KKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKF-----TELLDAG--FIDTFRY 188
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQK 261
+P++ Y+ W A N G RID+ C CL +
Sbjct: 189 FYPDQEGIYSWWSYRFSARAKNAGWRIDY-FCVSECLKDR 227
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 114/262 (43%), Gaps = 47/262 (17%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+KI ++NV+G+R + + G + + DADI+ QETK + +L ++ + GY +F
Sbjct: 84 LKISSWNVSGIRALIKKSG--MEYIMKEDADIVALQETKCDKNKLPEEVKLK-GYHHYF- 139
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
D + GY GVA + + K P+ + G L+ S
Sbjct: 140 ----LDSKKAGYCGVALYTKQK----------PIDIQYG----LKNS------------- 168
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTV---RIQ----FKLQFFHVLQGRRI 173
+ D EGR + ++ +F NVY P A + R+Q FK + + + +
Sbjct: 169 ----EFDDEGRLITAEYPNFYFLNVYVPNAGQKLVTLPKRLQWNEAFKSYVKQLDEKKPV 224
Query: 174 FVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYTC 232
+ GD+N+A ID + + F R + + F D FRS +P++ AYT
Sbjct: 225 IICGDMNVAHQEIDLTNPKTNTKNAGFTKEEREGMTDFLAAGFVDTFRSLYPDKTGAYTF 284
Query: 233 WPSNTGAEQFNYGTRIDHILCA 254
W A N G R+D+ L +
Sbjct: 285 WSYFANARSKNIGWRLDYFLVS 306
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 117/280 (41%), Gaps = 59/280 (21%)
Query: 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSC 61
K +++NVNGLR + ++ + DAD C QETKL +L DL Y +++
Sbjct: 3 KFISWNVNGLRAAIKH--GFLQVFNEMDADFFCIQETKLAPGQLDLDL---PDYHQYWNY 57
Query: 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKD 121
+ GYSG A F K P P++ + G
Sbjct: 58 AE-----KKGYSGTAIFA--KQP--------PLSVQYGIN-------------------- 82
Query: 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL--------QGRRI 173
+ + D EGR + ++ F L N Y P + +E R+ F+ F Q + I
Sbjct: 83 -VPEFDHEGRVITLEYPDFYLINTYVPNSGAE-LKRLDFRHGFNEAFYEYVNQLSQQKSI 140
Query: 174 FVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F E R F S L++SG F D FR +P++
Sbjct: 141 VWCGDLNVAHQEIDLKNPQSNHHHPGFTDEE-RFDF-SKLLKSG--FTDTFRYFYPDQEH 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
+Y+ W A Q N G RID+ + + Q D + H+
Sbjct: 197 SYSWWSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIHD 236
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 117/263 (44%), Gaps = 52/263 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + +S +AD C QETK++ +L+ + GY S+++
Sbjct: 1 MKFISWNVNGLRACVGK--DFSQSFESLNADFFCLQETKMQAGQLE---LQFPGYTSYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A + R + P+A G G+++
Sbjct: 56 YAE-----KKGYSGTAIYTRKE----------PLAVSYGI-------------GIDEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKL-------QFFHVLQGRR- 172
D EGR + ++ F L VY P A E+ R+ +++ + H L ++
Sbjct: 86 ------DHEGRVITLEYDKFFLVTVYTPNA-QEELRRLDYRMTWEDAFQAYLHQLDAKKP 138
Query: 173 IFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVE-SGGSFFDVFRSKHPERREAYT 231
+ V GD+N+A ID + + F RS + + F D FR+ HPE+ Y+
Sbjct: 139 VIVCGDMNVAHQEIDLKNPKTNRRSAGFTDEERSKMTQLLSNGFTDTFRTLHPEQI-TYS 197
Query: 232 CWPSNTGAEQFNYGTRIDHILCA 254
W A + N G RID+ L +
Sbjct: 198 YWSYRFRAREKNAGWRIDYFLIS 220
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 124/282 (43%), Gaps = 61/282 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFG-SLRKLLDSFDADIICFQETKLRR---QELKSDLVMADGY- 55
+K++++NVNGLR + G S +L D D++C QETKL+ +E+K L+ DGY
Sbjct: 247 VKLLSWNVNGLRALLKLEGFSALQLAQREDFDVLCLQETKLQEKDIEEIKQRLI--DGYA 304
Query: 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGL 115
SF++C+ + + GYSG A R+K P++ G G+
Sbjct: 305 NSFWTCSVS----KLGYSGTAIISRIK----------PLSVRYGL-------------GI 337
Query: 116 EDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF---------H 166
D DSEGR V + F L Y P + + R+ +++ +
Sbjct: 338 PDH--------DSEGRLVTAEFDTFYLICGYVPNS-GDGLKRLSYRVTEWDPSLSNYLKE 388
Query: 167 VLQGRRIFVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRS 221
+ + + + + GDLN A ID + + F E + + ++ L F D FR
Sbjct: 389 LEKSKPVILTGDLNCAHEEIDIYNPAGNKRSAGFTDEERKSFAKNFLSR---GFVDTFRR 445
Query: 222 KHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHD 263
+HP YT W G +FN G R+D+ L + + HD
Sbjct: 446 QHPGVI-GYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHD 486
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 117/268 (43%), Gaps = 61/268 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR V + DADI C QETKL QE + D +GYE +++
Sbjct: 1 MKLISWNVNGLRACVKK--GFEDFFKEADADIFCVQETKL--QEGQIDFA-PEGYECYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P + G+ G+E+
Sbjct: 56 YAE-----KKGYSGTAVFTK-KHPLKV------------WNGI----------GMEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDT---VRIQFKLQFFHVLQ----GRRI 173
D EGR + + F VY P + SE R++++ F LQ + +
Sbjct: 86 ------DQEGRVITLEFEDFFFVTVYTPNSQSELKRLDYRMKWEDDFREYLQELDKEKPV 139
Query: 174 FVVGDLNIAPAAID-------RCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226
+ GDLN+A ID + +AG F + E R F +L G F D FR +PE
Sbjct: 140 IMTGDLNVAHEEIDLKNPKTNKKNAG--FTQEE-RNKFTELL---GAGFVDSFRYLNPEL 193
Query: 227 REAYTCWPSNTGAEQFNYGTRIDHILCA 254
AYT W A + + G RID+ + +
Sbjct: 194 AGAYTWWSYRFKAREKDAGWRIDYFVVS 221
>gi|238878531|gb|EEQ42169.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 451
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 105/403 (26%), Positives = 151/403 (37%), Gaps = 130/403 (32%)
Query: 1 MKIVTYNVNGLR--------QRVSQFGSLRKLLDSFDADIICFQETKLRRQELK---SDL 49
++ +T+NVNG++ ++ L + ADII QE KL L+ S L
Sbjct: 24 IRYITFNVNGVKTIFNYHPWNQLKNNKDFNTLFNLLQADIITLQELKLTETSLQQQMSQL 83
Query: 50 VMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEV-----ALPVAAEEGFTGLL 104
V Y+SF S T + GYSGV F R +P S+ + AEEG TG L
Sbjct: 84 VHLSDYKSFISIPVT----KKGYSGVGLFIR--NPKSNENKKHRKHLTVIKAEEGITGWL 137
Query: 105 ---------ETSGSKI--------MEGLEDFSKDELLKIDSEGRCVITDHG-HFILFNVY 146
+S +KI + G D K L +DSEGRCV + + ++F VY
Sbjct: 138 PSSSSSSSSSSSANKIPYRESANNIGGYTDIEKLPGLHLDSEGRCVCVELADNTVIFAVY 197
Query: 147 GPRADSEDTVRIQ-FKLQFFHVLQGR-----------RIFVVGDLNIAPAAIDRCDA--- 191
P A+S+ T + F+L F +L R +I ++GD+NIA ID +
Sbjct: 198 CP-ANSQCTYDGELFRLTFIKLLLQRCYNLVKLYPQKKIVIMGDINIAIDMIDHAETIEL 256
Query: 192 -------GPDFAKNEFRIW----------------------FRSMLVESGGS-------- 214
P F + F + RS+ +
Sbjct: 257 GIKENLLKPSFRGHNFEVLNYENCVSFRTATEARKLLNKYVIRSIWQDLKNEKNPNQKER 316
Query: 215 ------FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHN 268
+D R R + YT W + T A Q N+G+RID IL + + Q
Sbjct: 317 EKEEPFLYDTTRLVQGRRMKMYTVWNTLTNARQINHGSRIDLILFSDEKMVQ-------- 368
Query: 269 FVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVY 311
+ NA W M GSDH PV+
Sbjct: 369 ------------------RISNADIWPFLM-----GSDHCPVF 388
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 117/270 (43%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL + + Y
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDLNLEEYY----- 52
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
T + + GYSG A F + K P S T GL G+E+
Sbjct: 53 -TYWNYAVKKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R ED R+ K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRVYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F +L E F D +R +P
Sbjct: 137 KKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
+ AY+ W GA N G R+D+ + +
Sbjct: 193 NQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S +ADI C QE KL Q+ + DL +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-NADIFCLQEIKL--QDGQIDL-NPEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KKPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLDYRMKWEDDFRAYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E + R ++E G F D +R +P++
Sbjct: 141 VFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTR--ILEEG--FIDTYRYLYPDQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|169787316|gb|ACA80097.1| putative DNA lyase [Colletotrichum cereale]
Length = 233
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 40/193 (20%)
Query: 24 LLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKS 83
+ + ADI+ QETK++R++L D+V+ G++ FS K + GYSGVA + R
Sbjct: 1 MFEILGADIVIMQETKIQRKDLHDDMVLVPGWDVVFSLP----KHKKGYSGVAIYTR--- 53
Query: 84 PFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK----------DEL------LKID 127
P+ AEEG TG+L S D + D+L +D
Sbjct: 54 ----NATCCPIRAEEGITGILPAPNSST--SFRDLPEAQQIGGYPRLDQLPGEVDEATLD 107
Query: 128 SEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGD 178
SEGRCV+ + F+L Y P + D+ R F+L + L G+++ + GD
Sbjct: 108 SEGRCVVLEFLVFVLIGTYSPA--TRDSSRDDFRLGYLSALDARVRNLVAAGKQVILTGD 165
Query: 179 LNIAPAAIDRCDA 191
LN+ +D C+
Sbjct: 166 LNVIRDEMDTCNV 178
>gi|73539900|ref|YP_294420.1| AP endonuclease [Ralstonia eutropha JMP134]
gi|72117313|gb|AAZ59576.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ralstonia
eutropha JMP134]
Length = 258
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 109/266 (40%), Gaps = 55/266 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
++I++ N+NG+R + + + DAD++C QE K + ++ + GY +F
Sbjct: 2 LRIISANLNGIRSASKK--GFFEWMGKQDADMVCVQELKAQAADMTEAFLAPHGYHGYFH 59
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV + R K E TG F
Sbjct: 60 YAE-----KKGYSGVGLYTRHKP-------------ERVITG---------------FGN 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFF-----HVLQ----GR 171
E DSEGR V + H + +VY P S + R Q K +F H+LQ GR
Sbjct: 87 PEF---DSEGRYVEVQYPHLAVISVYVPSGSSSEE-RQQAKFRFMEAFLPHLLQLKASGR 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
I + GD+NIA ID + + + F R W + G + DVFR P R
Sbjct: 143 EIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGQLFDMHG--YVDVFRQLDP-RP 199
Query: 228 EAYTCWPSNTGAEQFNYGTRIDHILC 253
E YT W + A N G RID+ L
Sbjct: 200 EQYTWWSNRGQAYAKNVGWRIDYHLA 225
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 118/270 (43%), Gaps = 64/270 (23%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR +++ G L L +S +ADI C QE KL QE + DL +GY ++++
Sbjct: 1 MKFISWNVNGLRAVIAKGGFLEYLEES-NADIFCVQEIKL--QEGQIDL-NVEGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-----------RADSEDTVRIQFKLQFFHVLQ 169
D EGR + + F + +Y P R ED R K + +
Sbjct: 87 ------DQEGRVITLEFEDFYIITLYTPNSKRGLERLEYRMKWEDDFRAYIK----RLDE 136
Query: 170 GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ + GDLN+A ID + P F+ E R F +L E F D +R +P
Sbjct: 137 KKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFIDTYRYLYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
++ AY+ W GA N G R+D+ + +
Sbjct: 193 DQEGAYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|221218058|ref|ZP_03589524.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224533538|ref|ZP_03674127.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225549668|ref|ZP_03770634.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|387827436|ref|YP_005806718.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
gi|221192006|gb|EEE18227.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224513211|gb|EEF83573.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369945|gb|EEG99392.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|312149695|gb|ADQ29766.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
Length = 255
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 137/332 (41%), Gaps = 94/332 (28%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNG+R + + + + + DI+C QETK R++L DL+ + Y S+FS
Sbjct: 1 MKLISWNVNGIRAVLKK--GFLEFVKEYTPDILCIQETKALREQLPKDLIF-ENYYSYFS 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
++ GYSGV + +V+ +++ + EE F
Sbjct: 58 NSKIK-----GYSGVCIYSKVEP------ISVRLLGEEIF-------------------- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GR 171
D+EGR ++ + FIL N Y P + R+ +KL F ++ G+
Sbjct: 87 ------DNEGRGLVACYDDFILVNGYFPNSQVLRR-RLGYKLDFLSYVENLADSLVCDGK 139
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKN------EFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + GD NIA ID PD ++ E W L + F +F +K P
Sbjct: 140 NVVICGDFNIAHTEIDL--ISPDSNRDSPGYYIEETTWLDDFLNKGYVDTFRIF-NKDP- 195
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKR 285
YT W T A + N G RID+ + + F +V + IL
Sbjct: 196 --GYYTWWSYRTRARERNMGWRIDYFIV-------------NEFFKRNVEKSLIL----- 235
Query: 286 WKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317
++ GSDH PV++ L +V
Sbjct: 236 --------------DKVMGSDHCPVFLELADV 253
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 116/266 (43%), Gaps = 56/266 (21%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK++++NVNGLR +++ G L L +S ADI C QE KL+ ++ +L +GY ++++
Sbjct: 1 MKLISWNVNGLRAVIAKGGFLEYLEES-SADIFCLQEIKLQEGQIDLNL---EGYYTYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F + K P S T GL G+E+
Sbjct: 57 YAV-----KKGYSGTAIFSK-KEPLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D EGR + + F + +Y P R D F+ + + + +
Sbjct: 87 ------DQEGRLITLEFEDFYMITLYTPNSKRGLERLDYRMKWEDDFRSYIKRLDEKKPV 140
Query: 174 FVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
GDLN+A ID + P F+ E R F +L E F D +R +P +
Sbjct: 141 IFCGDLNVAHKEIDLKNPKSNRKNPGFSDEE-REKFTCILEE---GFVDTYRYLYPNQEG 196
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCA 254
AY+ W GA N G R+D+ + +
Sbjct: 197 AYSWWSYRMGARAKNIGWRLDYFVVS 222
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 122/270 (45%), Gaps = 65/270 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
+K +++NVNGLR + + +AD C QETK++ +L + +GY S+++
Sbjct: 2 LKFISWNVNGLRACYDK--GFVDVFHRLEADFFCLQETKMQEGQLDAKF---EGYHSYWN 56
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F +VK P S T GL G+E+
Sbjct: 57 YAE-----KKGYSGTAIFSKVK-PLSVT------------YGL----------GIEEH-- 86
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQ-------FFHVLQGRR- 172
D EGR + + F L VY P + E+ R+ ++++ + L+ ++
Sbjct: 87 ------DHEGRVITLELESFYLITVYTPNS-QEELRRLDYRMKWEDDFRAYLKKLEEKKP 139
Query: 173 IFVVGDLNIAPAAID-------RCDAG-PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHP 224
+ V GDLN+A ID R +AG D + +F + L+ESG F D FR +P
Sbjct: 140 VIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKF-----TTLLESG--FTDTFRYFYP 192
Query: 225 ERREAYTCWPSNTGAEQFNYGTRIDHILCA 254
E+ Y+ W A + N G RID+ L +
Sbjct: 193 EQEGIYSWWSYRFKAREKNSGWRIDYFLTS 222
>gi|379730689|ref|YP_005322885.1| exodeoxyribonuclease III Xth [Saprospira grandis str. Lewin]
gi|378576300|gb|AFC25301.1| exodeoxyribonuclease III Xth [Saprospira grandis str. Lewin]
Length = 257
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK+++YNVNGLR + + + D DII QE K R+++ + + A GYE +
Sbjct: 1 MKVLSYNVNGLRAAIRK--GFVDWVKENDIDIIGLQEAKALREQVDLEELQAAGYEHIYW 58
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSGV +VK+ LE G G+E F
Sbjct: 59 HAAE----KKGYSGVVVLSKVKAD-------------------LEVQGM----GIERF-- 89
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVL---------QGR 171
D EGR + D G + L N Y P S +VR + K F + +
Sbjct: 90 ------DKEGRVLRLDFGDWTLLNCYFPSGTS-GSVRQEVKYDFLDSIYDWVQELKKERP 142
Query: 172 RIFVVGDLNIAPAAIDRCDAGPDFAKNEF----RIWFRSMLVESGGSFFDVFRSKHPERR 227
+I + GD NIA ID + + + F R W L E G F D FR HPE +
Sbjct: 143 KILLQGDYNIAHEEIDIHNPKRNHKTSGFLPEERAWMSKWLEE--GGFVDSFRQLHPEEQ 200
Query: 228 EAYTCWPSNTG-AEQFNYGTRIDH 250
+ ++ W + A N G RID+
Sbjct: 201 K-FSWWSMRSKTARANNKGWRIDY 223
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 63/285 (22%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFD---ADIICFQETKLRRQELKSDLVMADGYES 57
MK+V++NVNGLR + + +DSF+ AD+ QE KL +L +L +GY+
Sbjct: 1 MKLVSWNVNGLRAVIK-----KGFVDSFNEINADVFALQEIKLSEGQLDFEL---EGYKM 52
Query: 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLED 117
+++ + R GYSG A F R++ P++ G G+E+
Sbjct: 53 YYNYAQ-----RKGYSGTAIFTRIE----------PISVSYGI-------------GMEE 84
Query: 118 FSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQG------- 170
D+EGR + + F Y P + R+++++ + V +
Sbjct: 85 H--------DTEGRVITAEFEKFYFVTCYTPNS-KRGLERLEYRMVWEDVFRNYLNKLRE 135
Query: 171 -RRIFVVGDLNIAPAAIDRCDAGPDFAK----NEFRIWFRSMLVESGGSFFDVFRSKHPE 225
+ + + GDLN+A ID + + NE R F +L +SG + D FR +P+
Sbjct: 136 TKPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELL-KSG--YIDTFRYFYPD 192
Query: 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270
R++ Y+ W + + + N G RID+ + + D + H V
Sbjct: 193 RKDEYSWWSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIHQSV 237
>gi|420263761|ref|ZP_14766397.1| exodeoxyribonuclease [Enterococcus sp. C1]
gi|394769203|gb|EJF49066.1| exodeoxyribonuclease [Enterococcus sp. C1]
Length = 250
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 122/296 (41%), Gaps = 58/296 (19%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MK +++NVNGLR V + + ++ ++ DAD C QETKL+ +++ DL GY +++
Sbjct: 1 MKFISWNVNGLRAIVKK--NFSEVFEALDADFFCLQETKLQEGQIELDL---PGYHQYWN 55
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
+ GYSG A F K P S L G+E+
Sbjct: 56 YAE-----KKGYSGTAIFA--KEPALSVRYGL---------------------GIEEH-- 85
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGP-------RADSEDTVRIQFKLQFFHVLQGRRI 173
D+EGR + ++ F L Y P R D T F + Q + +
Sbjct: 86 ------DTEGRVITLEYPEFFLITCYTPNSQNELRRLDYRMTWEDAFLAYLTELKQQKSV 139
Query: 174 FVVGDLNIAPAAIDRCDAGPD-----FAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228
+ GDLN+A ID + + F E R F ++L F D FR +P+
Sbjct: 140 ILCGDLNVAHKNIDIKNWKTNQKSAGFTPEE-REKFSTLL---AAGFTDTFRYFYPDAEG 195
Query: 229 AYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYK 284
Y+ W A + N G RID+ + + + D + H + + C + +D K
Sbjct: 196 IYSWWSYRFNARKNNAGWRIDYFVVSDNLNERLLDAKIHTDIIGS-DHCPVELDLK 250
>gi|120598407|ref|YP_962981.1| exonuclease III [Shewanella sp. W3-18-1]
gi|146293514|ref|YP_001183938.1| exonuclease III [Shewanella putrefaciens CN-32]
gi|120558500|gb|ABM24427.1| Exodeoxyribonuclease III [Shewanella sp. W3-18-1]
gi|145565204|gb|ABP76139.1| Exodeoxyribonuclease III [Shewanella putrefaciens CN-32]
Length = 270
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 119/283 (42%), Gaps = 70/283 (24%)
Query: 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFS 60
MKIV++N+NGLR R+ Q L+ L+DS DII QETK+ + V A GY+ +
Sbjct: 1 MKIVSFNINGLRSRLHQ---LQALIDSHKPDIIGLQETKVHDEAFPLAEVEAMGYQVHYH 57
Query: 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSK 120
G + GVA +V P ++GF E + +++ G FS+
Sbjct: 58 -------GGKAHYGVAMLSKVA----------PQKIQKGFPSDDEDAQRRMIIGT--FSQ 98
Query: 121 DELLKIDSEGRCVITDHGHFILFNVYGPRADSED-----TVRIQFKLQFFHVLQGRR--- 172
+ GR + +FN Y P+ +S D + +F H LQ
Sbjct: 99 -------ANGRPLT-------VFNGYFPQGESIDHPTKYPAKRKFYQDLMHYLQTNHSND 144
Query: 173 --IFVVGDLNIAPAAID---------------RCDAGPDFAKNEFRIWFRSMLVESGGSF 215
I ++GD+NI+P +D +C P E R W +++
Sbjct: 145 EDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQP-----EEREWLKTL---QDWGL 196
Query: 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCL 258
D FR HPER E Y+ + + N G RID ++ A P L
Sbjct: 197 IDTFRQLHPERTERYSWFDYRSKGFDDNRGLRID-VILATPSL 238
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,827,798,175
Number of Sequences: 23463169
Number of extensions: 412195549
Number of successful extensions: 960255
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 4417
Number of HSP's that attempted gapping in prelim test: 945098
Number of HSP's gapped (non-prelim): 10003
length of query: 621
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 472
effective length of database: 8,863,183,186
effective search space: 4183422463792
effective search space used: 4183422463792
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)