Query 007013
Match_columns 621
No_of_seqs 358 out of 2338
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 17:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 1.6E-50 3.6E-55 407.8 18.0 243 1-315 1-260 (261)
2 PRK13911 exodeoxyribonuclease 100.0 1E-48 2.3E-53 399.5 23.1 236 1-314 1-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 2.8E-40 6E-45 340.8 23.6 242 1-315 1-267 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 8.7E-39 1.9E-43 327.0 22.4 240 1-314 1-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 4E-36 8.6E-41 305.9 23.4 239 1-314 1-254 (255)
6 PRK05421 hypothetical protein; 99.8 8.4E-20 1.8E-24 188.3 20.2 210 1-316 44-261 (263)
7 KOG1294 Apurinic/apyrimidinic 99.8 1.2E-20 2.5E-25 198.3 12.0 245 1-315 64-334 (335)
8 KOG1294 Apurinic/apyrimidinic 99.7 4.8E-17 1.1E-21 171.0 11.2 172 122-344 5-187 (335)
9 PF03372 Exo_endo_phos: Endonu 99.7 1.3E-16 2.7E-21 157.7 10.7 75 4-82 1-83 (249)
10 PLN03144 Carbon catabolite rep 99.7 3.8E-15 8.3E-20 167.6 20.0 87 1-88 255-359 (606)
11 COG3568 ElsH Metal-dependent h 99.6 8.2E-15 1.8E-19 148.5 18.9 229 1-317 10-258 (259)
12 KOG3873 Sphingomyelinase famil 99.6 1.4E-15 3E-20 157.0 13.3 249 1-319 9-295 (422)
13 TIGR03395 sphingomy sphingomye 99.6 4.4E-14 9.5E-19 147.3 20.2 40 1-40 1-47 (283)
14 PTZ00297 pantothenate kinase; 99.5 3.6E-13 7.8E-18 165.3 22.1 258 1-317 11-315 (1452)
15 KOG2756 Predicted Mg2+-depende 99.5 2.6E-13 5.6E-18 135.4 12.6 191 2-254 101-309 (349)
16 PRK15251 cytolethal distending 99.4 4.4E-12 9.6E-17 129.7 18.3 149 1-185 25-199 (271)
17 PF06839 zf-GRF: GRF zinc fing 99.4 3.5E-13 7.6E-18 101.5 4.4 45 566-617 1-45 (45)
18 PF14529 Exo_endo_phos_2: Endo 99.3 4.3E-12 9.4E-17 113.8 9.4 97 140-259 1-100 (119)
19 KOG2338 Transcriptional effect 99.3 6.8E-11 1.5E-15 127.8 16.9 139 19-184 152-306 (495)
20 COG3021 Uncharacterized protei 99.2 5.1E-11 1.1E-15 123.2 11.7 141 2-184 90-236 (309)
21 smart00476 DNaseIc deoxyribonu 99.0 1.5E-08 3.1E-13 105.3 17.9 152 1-183 18-189 (276)
22 smart00128 IPPc Inositol polyp 99.0 1.5E-08 3.3E-13 107.2 16.1 149 2-184 6-195 (310)
23 COG5239 CCR4 mRNA deadenylase, 98.8 3.7E-08 8E-13 103.0 12.9 81 1-81 31-131 (378)
24 KOG0620 Glucose-repressible al 98.7 2.7E-08 5.9E-13 106.7 9.3 85 1-87 20-120 (361)
25 KOG0566 Inositol-1,4,5-triphos 98.1 9.4E-05 2E-09 85.5 16.7 45 138-182 673-726 (1080)
26 KOG1956 DNA topoisomerase III 97.4 5.6E-05 1.2E-09 84.2 2.0 40 566-614 719-758 (758)
27 COG2374 Predicted extracellula 97.1 0.0065 1.4E-07 69.7 13.8 21 20-40 506-526 (798)
28 PLN03191 Type I inositol-1,4,5 95.5 0.1 2.3E-06 59.3 11.3 47 138-184 420-483 (621)
29 KOG4399 C2HC-type Zn-finger pr 94.5 0.021 4.6E-07 57.6 2.3 50 563-619 11-60 (325)
30 COG5411 Phosphatidylinositol 5 91.8 0.44 9.6E-06 52.1 7.2 45 138-182 165-218 (460)
31 PF01396 zf-C4_Topoisom: Topoi 65.6 9.5 0.00021 27.8 3.5 36 567-616 3-38 (39)
32 PF06373 CART: Cocaine and amp 62.8 2.6 5.7E-05 34.5 0.2 44 551-612 26-69 (73)
33 PLN03191 Type I inositol-1,4,5 53.0 11 0.00023 43.6 2.9 35 3-39 112-149 (621)
34 PF09507 CDC27: DNA polymerase 47.5 6.7 0.00015 43.1 0.3 15 453-467 416-430 (430)
35 PF04606 Ogr_Delta: Ogr/Delta- 38.7 26 0.00057 26.4 2.2 30 567-596 1-30 (47)
36 PTZ00312 inositol-1,4,5-tripho 37.3 66 0.0014 34.1 5.6 47 138-184 80-142 (356)
37 PF05325 DUF730: Protein of un 33.2 51 0.0011 28.8 3.3 44 565-614 20-65 (122)
38 cd02854 Glycogen_branching_enz 20.8 91 0.002 27.4 2.8 21 141-181 7-27 (99)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-50 Score=407.75 Aligned_cols=243 Identities=37% Similarity=0.675 Sum_probs=209.2
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||||+++.+ ++++|.+.+||||||||||.....++...+...||+.++.. |.+||+|||||+|
T Consensus 1 mkI~SwNVNgiRar~~~---~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~------gqKgysGVailsr 71 (261)
T COG0708 1 MKIASWNVNGLRARLKK---LLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNH------GQKGYSGVAILSK 71 (261)
T ss_pred CeeEEEehhhHHHHHHH---HHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEec------CcCCcceEEEEEc
Confidence 89999999999999986 99999999999999999999999988877778999776663 5589999999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.+ |..+..||.+. ...|.|||+|.+++..|.|+|+|+|++.....+|..+
T Consensus 72 ~~----------~~~v~~g~~~~--------------------~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~~~k~~y 121 (261)
T COG0708 72 KP----------PDDVRRGFPGE--------------------EEDDEEGRVIEAEFDGFRVINLYFPNGSSIGLEKFDY 121 (261)
T ss_pred cC----------chhhhcCCCCC--------------------ccccccCcEEEEEECCEEEEEEEcCCCCCCCCcchHH
Confidence 83 44666666431 1257899999999999999999999998756788999
Q ss_pred HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC--------CCCCchHHHHHHHHHHHHcCCceeeeecccC
Q 007013 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG--------PDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223 (621)
Q Consensus 161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~--------~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h 223 (621)
|++|+..|+ ++++|||||||++|.++|..++. .+|.+.+ |.||..++. .| |+|+||.+|
T Consensus 122 Kl~f~~~l~~~l~~l~~~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~ee-R~~~~~ll~-~G--~~D~~R~~~ 197 (261)
T COG0708 122 KLRFLDALRNYLEELLKKGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEE-RAWFRRLLN-AG--FVDTFRLFH 197 (261)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHH-HHHHHHHHH-cc--hhhhhHhhC
Confidence 999988876 79999999999999999877652 4677766 999999884 54 999999999
Q ss_pred CCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCC
Q 007013 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303 (621)
Q Consensus 224 P~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 303 (621)
|.... ||||+++.++++.|.|.||||||+|+.+.. ++++|.|..+.+.+. .
T Consensus 198 p~~~~-YTwW~YR~~~~~~n~G~RID~~l~S~~L~~-------------~~~~a~I~~~~rg~e---------------~ 248 (261)
T COG0708 198 PEPEK-YTWWDYRANAARRNRGWRIDYILVSPALAD-------------RLKDAGIDREVRGWE---------------K 248 (261)
T ss_pred CCCCc-ccccccccchhhhcCceeEEEEEeCHHHHH-------------HHHhcCccHHHhcCC---------------C
Confidence 99776 999999999888889999999999998765 789999998755432 4
Q ss_pred CCCCcceEEEEe
Q 007013 304 GSDHAPVYMCLG 315 (621)
Q Consensus 304 gSDH~PV~~~L~ 315 (621)
.||||||+++|.
T Consensus 249 pSDHaPV~~e~~ 260 (261)
T COG0708 249 PSDHAPVWVELD 260 (261)
T ss_pred CCCcCcEEEEec
Confidence 599999999986
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=1e-48 Score=399.54 Aligned_cols=236 Identities=34% Similarity=0.634 Sum_probs=198.5
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||||++.++ .+.++|..++||||||||||++...+. ....||..|+... +++||+|||||+|
T Consensus 1 mki~swNVNgir~~~~~--~~~~~l~~~~~DIiclQEtK~~~~~~~---~~~~gY~~~~~~~-----~~kgy~GVAi~~k 70 (250)
T PRK13911 1 MKLISWNVNGLRACMTK--GFMDFFNSVDADVFCIQESKMQQEQNT---FEFKGYFDFWNCA-----IKKGYSGVVTFTK 70 (250)
T ss_pred CEEEEEEeCChhHhhhh--hHHHHHHhcCCCEEEEEeecccccccc---cccCCceEEEEec-----ccCccceEEEEEc
Confidence 89999999999998864 499999999999999999999887653 3467999887643 5689999999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.+ |+.+..|+.. ...|.|||+|.++++.|+|+|||+|+++. ..+|++|
T Consensus 71 ~~----------~~~v~~~~~~---------------------~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~-~~~r~~~ 118 (250)
T PRK13911 71 KE----------PLSVSYGINI---------------------EEHDKEGRVITCEFESFYLVNVYTPNSQQ-ALSRLSY 118 (250)
T ss_pred CC----------chheEEcCCC---------------------CcccccCCEEEEEECCEEEEEEEecCCCC-CCcchHH
Confidence 83 5555555420 13578999999999999999999999885 4568899
Q ss_pred HHHHHHHHc--------CCcEEEEcccCCCCCccccCCC-----CCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCC
Q 007013 161 KLQFFHVLQ--------GRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERR 227 (621)
Q Consensus 161 k~~fl~~L~--------g~~VII~GDFN~~~~~iD~~~~-----~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~ 227 (621)
|++|+..|. ++++|||||||++|.++|.+++ ..+|.+.+ |.||+.++. .| |+|+||.+||...
T Consensus 119 K~~~~~~~~~~l~~l~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~e-r~~f~~~l~-~g--l~D~~R~~~p~~~ 194 (250)
T PRK13911 119 RMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEE-RGKFSELLN-AG--FIDTFRYFYPNKE 194 (250)
T ss_pred HHHHHHHHHHHHHhcccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHH-HHHHHHHHh-cC--CeehhhhhCCCCC
Confidence 988876655 5799999999999999999864 35677766 999999986 34 9999999999977
Q ss_pred CCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCC
Q 007013 228 EAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 307 (621)
Q Consensus 228 ~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH 307 (621)
+.||||+.+.+++..|+|.||||||+++.+.. .+.++.|... ..+|||
T Consensus 195 ~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~-------------~~~~~~i~~~-------------------~~~SDH 242 (250)
T PRK13911 195 KAYTWWSYMQQARDKNIGWRIDYFLCSNPLKT-------------RLKDALIYKD-------------------ILGSDH 242 (250)
T ss_pred CCCccCCCcCCccccCCcceEEEEEEChHHhh-------------hEEEEEECCC-------------------CCCCCc
Confidence 78999999999999999999999999998754 6788887553 478999
Q ss_pred cceEEEE
Q 007013 308 APVYMCL 314 (621)
Q Consensus 308 ~PV~~~L 314 (621)
|||+++|
T Consensus 243 ~Pv~~~~ 249 (250)
T PRK13911 243 CPVGLEL 249 (250)
T ss_pred ccEEEEe
Confidence 9999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=2.8e-40 Score=340.77 Aligned_cols=242 Identities=31% Similarity=0.540 Sum_probs=181.0
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||++....+ +.++|++++|||||||||+.....+....+...||..++. +.++|+|||||+|
T Consensus 1 mri~T~Nv~g~~~~~~~---i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~-------~~~~~~GvailSr 70 (268)
T PRK11756 1 MKFVSFNINGLRARPHQ---LEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYH-------GQKGHYGVALLSK 70 (268)
T ss_pred CEEEEEEcCCHHHHHHH---HHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEe-------CCCCCCEEEEEEC
Confidence 89999999999876654 9999999999999999999876655444455679987764 2357889999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEEcCCCCCch-h
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-T 155 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~-~ 155 (621)
.+ +.....++.+ ...+.+||++.+.+ +.|.|+|+|+|+..... .
T Consensus 71 ~p----------~~~~~~~~~~---------------------~~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~ 119 (268)
T PRK11756 71 QT----------PIAVRKGFPT---------------------DDEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHP 119 (268)
T ss_pred CC----------hHHeEECCCC---------------------ccccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcc
Confidence 83 2223332210 01245789987765 35999999999976421 2
Q ss_pred HHHHHHHHHHHHHc---------CCcEEEEcccCCCCCccccCCC-----------CCCCCchHHHHHHHHHHHHcCCce
Q 007013 156 VRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-----------GPDFAKNEFRIWFRSMLVESGGSF 215 (621)
Q Consensus 156 eR~~~k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~-----------~~~f~~~~~r~~l~~lL~~~g~~L 215 (621)
.+..++++|+..|. +.++||+||||+.+..+|.+.+ ..+|.+.+ |.|++.++. .| |
T Consensus 120 ~~~~~r~~~~~~l~~~l~~~~~~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~e-r~~~~~l~~-~~--l 195 (268)
T PRK11756 120 TKFPAKRQFYQDLQNYLETELSPDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWLDRLMD-WG--L 195 (268)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHH-HHHHHHHHh-CC--c
Confidence 33334444443332 6799999999999999988632 23455555 889987763 44 9
Q ss_pred eeeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCC
Q 007013 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 295 (621)
Q Consensus 216 ~D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~ 295 (621)
+|+||.+||...+.||||+.+.++++.|+|.||||||++..+.. +|.+|.|..+.+..
T Consensus 196 ~D~~R~~~p~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~-------------~v~~~~i~~~~~~~--------- 253 (268)
T PRK11756 196 VDTFRQLNPDVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAE-------------RCVETGIDYDIRGM--------- 253 (268)
T ss_pred EeehhhhCCCCCCcccCcCCcccccccCCceEEEEEEeCHHHHh-------------hheEeEEeHHHhCC---------
Confidence 99999999985557999999999888899999999999987643 68999998764321
Q ss_pred CCCCCCCCCCCCcceEEEEe
Q 007013 296 GGMSTRLEGSDHAPVYMCLG 315 (621)
Q Consensus 296 ~~~~~~~~gSDH~PV~~~L~ 315 (621)
..+||||||+++|.
T Consensus 254 ------~~~SDH~PV~~~~~ 267 (268)
T PRK11756 254 ------EKPSDHAPIWATFK 267 (268)
T ss_pred ------CCCCCcccEEEEEe
Confidence 35799999999986
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=8.7e-39 Score=327.00 Aligned_cols=240 Identities=35% Similarity=0.656 Sum_probs=186.2
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++....+ +.++|+.++|||||||||+.....+...++...||..|++.. +|+.|||||+|
T Consensus 1 mri~t~Ni~g~~~~~~~---~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-------~g~~Gvailsr 70 (254)
T TIGR00195 1 MKIISWNVNGLRARLHK---GLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ-------KGYSGVAIFSK 70 (254)
T ss_pred CEEEEEEcCcHHHhHHH---HHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC-------CCcceEEEEEc
Confidence 89999999999877664 899999999999999999987655554455668998776632 57789999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.. |+.+..++.. ...|.+||++.+++..|.|+|+|+|+.+....++..+
T Consensus 71 ~~----------~~~~~~~~~~---------------------~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 71 EE----------PLSVRRGFGV---------------------EEEDAEGRIIMAEFDSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred CC----------cceEEECCCC---------------------cccccCCCEEEEEECCEEEEEEEccCCCCCCCccHHH
Confidence 62 4444443310 1246799999999989999999999965444556666
Q ss_pred HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226 (621)
Q Consensus 161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 226 (621)
+.+|++.|. +.+|||+||||+.+..+|+.++. .+|...+ +.+|+.++. .+ |+|+||..||..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e-~~~~~~l~~-~~--l~D~~r~~~~~~ 195 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVDKDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEE-REWLDRLLE-AG--LVDTFRKFNPDE 195 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChhhccChhhcCCCcCcChHH-HHHHHHHHH-cC--CEeeecccCCCC
Confidence 666665554 58999999999999998876532 4566654 788988874 54 999999999984
Q ss_pred CCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306 (621)
Q Consensus 227 ~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD 306 (621)
+.||||+.+.+++..|+|.||||||+++.+.. .|.+|.|....+. ....||
T Consensus 196 -~~~T~~~~~~~~~~~~~g~RID~i~~s~~~~~-------------~v~~~~i~~~~~~---------------~~~~SD 246 (254)
T TIGR00195 196 -GAYSWWDYRTKARDRNRGWRIDYFLVSEPLKE-------------RCVDCGIDYDIRG---------------SEKPSD 246 (254)
T ss_pred -CCCcccCCcCCccccCCceEEEEEEECHHHHh-------------hhhEEEEcHHHhc---------------CCCCCC
Confidence 57999999988887899999999999998754 6788988764211 126799
Q ss_pred CcceEEEE
Q 007013 307 HAPVYMCL 314 (621)
Q Consensus 307 H~PV~~~L 314 (621)
|+||.++|
T Consensus 247 H~Pv~~~~ 254 (254)
T TIGR00195 247 HCPVVLEF 254 (254)
T ss_pred cccEEEeC
Confidence 99999975
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4e-36 Score=305.93 Aligned_cols=239 Identities=37% Similarity=0.671 Sum_probs=177.6
Q ss_pred CeEEEeecccccccchhhhHH-HHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEE
Q 007013 1 MKIVTYNVNGLRQRVSQFGSL-RKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFC 79 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l-~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~ 79 (621)
|||+||||||++...++ + .++|..++|||||||||+.....+...++...||..++... ...|++|||||+
T Consensus 1 lri~t~Nv~g~~~~~~~---~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~G~ails 72 (255)
T TIGR00633 1 MKIISWNVNGLRARLHK---LFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGA-----KSKGYSGVAILS 72 (255)
T ss_pred CEEEEEecccHHHHhhc---cHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeec-----ccCCcceEEEEE
Confidence 89999999999887765 5 99999999999999999986544433344567898777643 123678999999
Q ss_pred eecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHH
Q 007013 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (621)
Q Consensus 80 K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~ 159 (621)
|.+ +..+..++. ....|.+||++.++++.+.|+++|+|+.+....++..
T Consensus 73 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~~~~~~ 121 (255)
T TIGR00633 73 KVE----------PLDVRYGFG---------------------GEEHDEEGRVITAEFDGFTVVNVYVPNGGSRGLERLE 121 (255)
T ss_pred cCC----------cceEEECCC---------------------CCcccCCCcEEEEEECCEEEEEEEccCCCCCCchhHH
Confidence 973 222333221 0234678999999989999999999998743344444
Q ss_pred HHHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCC
Q 007013 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225 (621)
Q Consensus 160 ~k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 225 (621)
++..|++.|. +.++||+||||+.+..+|+.+.. .++...+ +.+|+.++. .| |+|+||..+|.
T Consensus 122 ~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~--l~D~~~~~~~~ 197 (255)
T TIGR00633 122 YKLQFWDALFQYYEKELDAGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEE-REWFDELLE-AG--LVDTFRHFNPD 197 (255)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeecccCCChHHccChhhcCCCCCcCHHH-HHHHHHHHH-cC--CEecchhhCCC
Confidence 4444433221 67999999999999888776432 2343333 677888875 55 99999999998
Q ss_pred CCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCC
Q 007013 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305 (621)
Q Consensus 226 ~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gS 305 (621)
..+.||||+.+.+.+..+.+.||||||++..+.. .+.++.|... ..+|
T Consensus 198 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~i~~~-------------------~~~S 245 (255)
T TIGR00633 198 TEGAYTWWDYRSGARDRNRGWRIDYFLVSEPLAE-------------RVVDSYIDSE-------------------IRGS 245 (255)
T ss_pred CCCcCcCcCCccCccccCCceEEEEEEECHHHHh-------------hhcEeEECCC-------------------CCCC
Confidence 7667999999877777788999999999987643 5677777643 3569
Q ss_pred CCcceEEEE
Q 007013 306 DHAPVYMCL 314 (621)
Q Consensus 306 DH~PV~~~L 314 (621)
||+||+++|
T Consensus 246 DH~pv~~~~ 254 (255)
T TIGR00633 246 DHCPIVLEL 254 (255)
T ss_pred CcccEEEEE
Confidence 999999998
No 6
>PRK05421 hypothetical protein; Provisional
Probab=99.84 E-value=8.4e-20 Score=188.30 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=121.7
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||++.+..-.+ ..+..| ..+|||||||||+.... + ..++...+|...|.... ....|++|||||+|
T Consensus 44 lri~t~NI~~~~~~~~~--~~l~~l-~~~~DiI~LQEv~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~GvaiLSR 115 (263)
T PRK05421 44 LRLLVWNIYKQQRAGWL--SVLKNL-GKDADLVLLQEAQTTPE-L-VQFATANYLAADQAPAF---VLPQHPSGVMTLSK 115 (263)
T ss_pred eeEEEEEccccccccHH--HHHHHh-ccCCCEEEEEecccCcc-h-HHHhhcccchHHhcccc---ccCCCccceeEeee
Confidence 69999999998765221 244555 89999999999976432 1 12333445543332221 12356789999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEE-EEE--e---CcEEEEEEEcCCCCCch
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-ITD--H---GHFILFNVYGPRADSED 154 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv~--~---~~~~LinVY~P~~~~~~ 154 (621)
.+ +.....+.+. . ..-..+|.+ .+. . +.+.|+|+|+++.....
T Consensus 116 ~p-----------i~~~~~~~~~----~----------------~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~ 164 (263)
T PRK05421 116 AH-----------PVYCCPLRER----E----------------PWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV 164 (263)
T ss_pred cc-----------cceeeccCCC----C----------------ccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh
Confidence 84 2111111000 0 001123333 222 2 24899999997653333
Q ss_pred hHHHHHHHHHHHHHc--CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCCccc
Q 007013 155 TVRIQFKLQFFHVLQ--GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTC 232 (621)
Q Consensus 155 ~eR~~~k~~fl~~L~--g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ 232 (621)
..|..+...+.+.+. ..|+||+||||+.... . ..++..++...+ +.|.+ .|.... +
T Consensus 165 ~~r~~q~~~l~~~~~~~~~p~Il~GDFN~~~~~-----------~---~~~l~~~~~~~~--l~~~~---~~~~~~-~-- 222 (263)
T PRK05421 165 DVYSKQLEPIGDQIAHHSGPVILAGDFNTWSRK-----------R---MNALKRFARELG--LKEVR---FTDDQR-R-- 222 (263)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcccccCccc-----------c---hHHHHHHHHHcC--CCccC---cCCccc-c--
Confidence 455555555555555 5799999999963211 0 134666666554 55542 111110 0
Q ss_pred CCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEE
Q 007013 233 WPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYM 312 (621)
Q Consensus 233 ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~ 312 (621)
..++.||||||++ ++ .+.++.+.. ..+|||+||++
T Consensus 223 ---------~~~~~~ID~I~~~-~~---------------~v~~~~v~~--------------------~~~SDH~Pv~a 257 (263)
T PRK05421 223 ---------RAFGRPLDFVFYR-GL---------------NVSKASVLV--------------------TRASDHNPLLV 257 (263)
T ss_pred ---------cccCCCcceEEEC-Cc---------------EEEEEEcCC--------------------CCCCCccCEEE
Confidence 1125789999984 32 567777753 37899999999
Q ss_pred EEec
Q 007013 313 CLGE 316 (621)
Q Consensus 313 ~L~~ 316 (621)
+|..
T Consensus 258 ~l~l 261 (263)
T PRK05421 258 EFSL 261 (263)
T ss_pred EEEe
Confidence 9975
No 7
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.83 E-value=1.2e-20 Score=198.26 Aligned_cols=245 Identities=26% Similarity=0.444 Sum_probs=185.6
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCC-eEEeecccCCCCCCCCceEEEEEE
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~~s~~~~~~~gr~GysGVAIl~ 79 (621)
+.|..|||.|++...+. .-..++.....|++|+|||+++-+..........+| +.++..+ .++.||+|++.++
T Consensus 64 ~~i~~~~i~~~~~~~~~--~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~~~~~~ 137 (335)
T KOG1294|consen 64 LNICPWDIAGLEACEKF--SGDPEISSELRDLQCLLETKCTIDSGPCSHPTEKGYTHSLLSCA----SKKDGYSGEIDYS 137 (335)
T ss_pred eecCchhhhhhhhhhcc--ccchhccccchhhhhhhhccceeccCcceecccCCcccceeecc----cccCCccceeeee
Confidence 36788999999887765 256778888999999999998754444333446788 5677765 3567899999998
Q ss_pred eecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHH
Q 007013 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (621)
Q Consensus 80 K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~ 159 (621)
+. .|..+..++..+ + -..+..||+|++++..+.|++.|+|+..... ....
T Consensus 138 ~~----------~p~~v~~~~~~~------------~-------s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~-~~~~ 187 (335)
T KOG1294|consen 138 KF----------KPLKVHYGFGAM------------G-------SDHRPVGRVIIAEFEIFILINTYVPNIGGGL-VNLV 187 (335)
T ss_pred ec----------ccceeeeccccc------------C-------CccCccceEEEEeecceeeccccCccccccc-chhh
Confidence 87 366666655210 1 2467899999999999999999999987632 2333
Q ss_pred HH--HHHHHHHc------------CCcEEEEcccCCCCCcccc---C-C------CCCCCCchHHHHHH-HHHHHHcCCc
Q 007013 160 FK--LQFFHVLQ------------GRRIFVVGDLNIAPAAIDR---C-D------AGPDFAKNEFRIWF-RSMLVESGGS 214 (621)
Q Consensus 160 ~k--~~fl~~L~------------g~~VII~GDFN~~~~~iD~---~-~------~~~~f~~~~~r~~l-~~lL~~~g~~ 214 (621)
++ ..+-..++ ..+++++||+|..|..+|. . . ...+|.+.+ |.|+ ..++. . +.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~~~~~t~e~-R~~~~~~~~~-~-~~ 264 (335)
T KOG1294|consen 188 YRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLSNAGFTPEE-RDSFFAELLE-K-GP 264 (335)
T ss_pred hhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcCCCCCCHHH-hhhHHHhhcc-C-Cc
Confidence 32 22222221 3589999999999999984 1 1 125677665 8888 56653 3 36
Q ss_pred eeeeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCC
Q 007013 215 FFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRW 294 (621)
Q Consensus 215 L~D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w 294 (621)
++|+||..|+.....||+|....+.+.++.+.|+||++++....+ .+.++.|..+
T Consensus 265 ~iDt~r~~~~~~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n-------------~~r~~~Ic~r------------ 319 (335)
T KOG1294|consen 265 LIDTYRELHKDQKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPN-------------NGRRFYICSR------------ 319 (335)
T ss_pred ceeehhhhcCCccccccchhhccccccCCCCCceeEEEecCcCCC-------------CCceeeeecC------------
Confidence 999999999998878999999999999999999999999998766 6788888774
Q ss_pred CCCCCCCCCCCCCcceEEEEe
Q 007013 295 KGGMSTRLEGSDHAPVYMCLG 315 (621)
Q Consensus 295 ~~~~~~~~~gSDH~PV~~~L~ 315 (621)
.+.+||||||++.|.
T Consensus 320 ------~~~gsdh~pi~~~~~ 334 (335)
T KOG1294|consen 320 ------PIHGSDHCPITLEFF 334 (335)
T ss_pred ------ccCCCCCCCeeeeec
Confidence 258999999999885
No 8
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.70 E-value=4.8e-17 Score=171.02 Aligned_cols=172 Identities=32% Similarity=0.413 Sum_probs=115.7
Q ss_pred cccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC
Q 007013 122 ELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG 192 (621)
Q Consensus 122 ~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~ 192 (621)
++..+|.+||++++++..+++++||+|....+..++ ++.|+..|. ++++++ |+++..+|.....
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~~~---~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~~ 77 (335)
T KOG1294|consen 5 EALELDSEGRCVIVDKEMFVLINVYCPRNSPEISKR---RLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEAC 77 (335)
T ss_pred hhhhhhccCCeeeeecccccccceeccccCCcchhh---hhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhhh
Confidence 446789999999999999999999999998765544 666766665 888888 8777776655433
Q ss_pred CCCCchH-HHHHHHHHHHHcCC-ceeeeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCccccccccccccc
Q 007013 193 PDFAKNE-FRIWFRSMLVESGG-SFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFV 270 (621)
Q Consensus 193 ~~f~~~~-~r~~l~~lL~~~g~-~L~D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~ 270 (621)
..+...+ ...++.+++..... -.+|..+..||+ .+.||+|.........+|+.+|||+.+.+-.++
T Consensus 78 ~~~~~~~~~~~~l~d~~~~~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~~v~----------- 145 (335)
T KOG1294|consen 78 EKFSGDPEISSELRDLQCLLETKCTIDSGPCSHPT-EKGYTHSLLSCASKKDGYSGEIDYSKFKPLKVH----------- 145 (335)
T ss_pred hccccchhccccchhhhhhhhccceeccCcceecc-cCCcccceeecccccCCccceeeeeecccceee-----------
Confidence 2222111 11223222221111 248999999999 667999999888888899999999998654321
Q ss_pred ccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEEEeccCCCCCCCChhHHhhhcccccchhHHHH
Q 007013 271 TCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPEIPQHSTPSLASRYLPIIRGVQQTLV 344 (621)
Q Consensus 271 ~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~~~~~~~~~~~l~~~~~~~~~g~~~~i~ 344 (621)
|.. +.++|||+||...+.... ....|...|.|.+-+.++.++
T Consensus 146 -----------------------~~~----~~~~s~h~~~g~~i~~e~-----e~~~l~~~y~p~~~~~~~~~~ 187 (335)
T KOG1294|consen 146 -----------------------YGF----GAMGSDHRPVGRVIIAEF-----EIFILINTYVPNIGGGLVNLV 187 (335)
T ss_pred -----------------------ecc----cccCCccCccceEEEEee-----cceeeccccCcccccccchhh
Confidence 111 125899999988775332 335666666666655554443
No 9
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.68 E-value=1.3e-16 Score=157.70 Aligned_cols=75 Identities=28% Similarity=0.350 Sum_probs=43.1
Q ss_pred EEeecccccccc---hhhhHHHHHHhhcCCcEEEEeccchh--hhchhHHHHhhcCCeEEeecccCCCCCCC---CceEE
Q 007013 4 VTYNVNGLRQRV---SQFGSLRKLLDSFDADIICFQETKLR--RQELKSDLVMADGYESFFSCTRTSDKGRT---GYSGV 75 (621)
Q Consensus 4 vSwNInGlr~~~---~r~~~l~~~L~~l~aDIIcLQETk~t--~~~l~~~l~~~~GY~~~~s~~~~~~~gr~---GysGV 75 (621)
+||||+++..+. .+...|.++|..++||||||||++.. ...+...+....+|..++.... ... +..|+
T Consensus 1 ~T~Nv~~~~~~~~~~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~ 76 (249)
T PF03372_consen 1 MTWNVRGWNYRSDNDRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGN----SPPSDAGGYGV 76 (249)
T ss_dssp EEEEESTHHHHHHHHHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETS----SSTTCSSSEEE
T ss_pred CeEEeCcCcccccchhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccc----cccccccCceE
Confidence 699999953221 11224999999999999999999843 2222222221222233333221 111 34699
Q ss_pred EEEEeec
Q 007013 76 ATFCRVK 82 (621)
Q Consensus 76 AIl~K~~ 82 (621)
+||+|.+
T Consensus 77 ~i~~r~~ 83 (249)
T PF03372_consen 77 AILSRSP 83 (249)
T ss_dssp EEEESSC
T ss_pred EEEEccc
Confidence 9999984
No 10
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=99.65 E-value=3.8e-15 Score=167.59 Aligned_cols=87 Identities=23% Similarity=0.355 Sum_probs=53.4
Q ss_pred CeEEEeecccc---c------------ccchhhhHHHHHHhhcCCcEEEEeccchhhh-chhHHHHhhcCCeEEeecccC
Q 007013 1 MKIVTYNVNGL---R------------QRVSQFGSLRKLLDSFDADIICFQETKLRRQ-ELKSDLVMADGYESFFSCTRT 64 (621)
Q Consensus 1 mkIvSwNInGl---r------------~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~-~l~~~l~~~~GY~~~~s~~~~ 64 (621)
+|||||||..- + ..-.|+..|++.|..++||||||||+..... ++..+.+...||..++.....
T Consensus 255 frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~ 334 (606)
T PLN03144 255 FTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTT 334 (606)
T ss_pred EEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCC
Confidence 58999999731 1 0112334699999999999999999954321 222233455789887653210
Q ss_pred C--CCCCCCceEEEEEEeecCCCCCc
Q 007013 65 S--DKGRTGYSGVATFCRVKSPFSST 88 (621)
Q Consensus 65 ~--~~gr~GysGVAIl~K~~~~f~~~ 88 (621)
. ..+..+..|+|||+|.+ +|++.
T Consensus 335 ~~~~~~~~~~DGcAIFyr~d-rFeLv 359 (606)
T PLN03144 335 EVYTGNTYVIDGCATFFRRD-RFSLV 359 (606)
T ss_pred ccccccccCCceeEEEEECc-ceEEE
Confidence 0 00112346999999984 55543
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.64 E-value=8.2e-15 Score=148.53 Aligned_cols=229 Identities=19% Similarity=0.191 Sum_probs=126.8
Q ss_pred CeEEEeeccccccc----chhhhHHHHHHhhcCCcEEEEeccchh----hhchhH---HHHhhcCCeEEeecccCCCCCC
Q 007013 1 MKIVTYNVNGLRQR----VSQFGSLRKLLDSFDADIICFQETKLR----RQELKS---DLVMADGYESFFSCTRTSDKGR 69 (621)
Q Consensus 1 mkIvSwNInGlr~~----~~r~~~l~~~L~~l~aDIIcLQETk~t----~~~l~~---~l~~~~GY~~~~s~~~~~~~gr 69 (621)
|+|+||||+-.... ... ..+.+.+.+..+|||||||+--. ++.+.. ......+...+++.........
T Consensus 10 ~~v~TyNih~~~~~~d~r~~~-~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 88 (259)
T COG3568 10 FKVLTYNIHKGFGAFDRRFDL-PRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLAPYWWSGAAFGAVYG 88 (259)
T ss_pred eEEEEEEEEEccCccCceecH-HHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCCccccchhhhhhhcc
Confidence 58999999733222 222 23899999999999999998642 222211 1222333333333221000022
Q ss_pred CCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcE-EE--EE---eCcEEEE
Q 007013 70 TGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VI--TD---HGHFILF 143 (621)
Q Consensus 70 ~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~-ii--v~---~~~~~Li 143 (621)
.+..|++|+++. |+...+.+ .++ . .-+.|.|- +. ++ ++.|.|+
T Consensus 89 ~~~~GnaiLS~~-----------pi~~v~~~-~lp-----~--------------~~~~~~Rgal~a~~~~~~g~~l~V~ 137 (259)
T COG3568 89 EGQHGNAILSRL-----------PIRDVENL-ALP-----D--------------PTGLEPRGALLAEIELPGGKPLRVI 137 (259)
T ss_pred cceeeeEEEecC-----------cccchhhc-cCC-----C--------------CCCCCCceeEEEEEEcCCCCEEEEE
Confidence 355799999976 33221111 000 0 01224442 22 23 3479999
Q ss_pred EEEcCCCCCchhHHHHHHHHHHHHHc---CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeec
Q 007013 144 NVYGPRADSEDTVRIQFKLQFFHVLQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFR 220 (621)
Q Consensus 144 nVY~P~~~~~~~eR~~~k~~fl~~L~---g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R 220 (621)
|+|+--. ..+|..+...++..+. ..++|++||||..+..-++.-.. ...+. ....+.+++.
T Consensus 138 ~~HL~l~---~~~R~~Q~~~L~~~~~l~~~~p~vl~GDFN~~p~s~~yr~~~------------~~~~~-~~~~~~~~~~ 201 (259)
T COG3568 138 NAHLGLS---EESRLRQAAALLALAGLPALNPTVLMGDFNNEPGSAEYRLAA------------RSPLN-AQAALTGAFA 201 (259)
T ss_pred EEecccc---HHHHHHHHHHHHhhccCcccCceEEEccCCCCCCCccceecc------------CCchh-hccccccccC
Confidence 9999733 3567666665665322 56999999999887764442211 01111 1112555555
Q ss_pred ccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCC
Q 007013 221 SKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMST 300 (621)
Q Consensus 221 ~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~ 300 (621)
-.++-.. -||-+.. .-.||||||+++.+ .|..+.+..+.- |
T Consensus 202 ~a~~~~~--~tfps~~-------p~lriD~Ifvs~~~---------------~i~~~~v~~~~~---------a------ 242 (259)
T COG3568 202 PAVGRTI--RTFPSNT-------PLLRLDRIFVSKEL---------------AIRSVHVLTDRL---------A------ 242 (259)
T ss_pred cccCccc--CCCCCCC-------ccccccEEEecCcc---------------cEEEEEeecCCC---------c------
Confidence 5554321 1222211 13489999999975 567777776511 1
Q ss_pred CCCCCCCcceEEEEecc
Q 007013 301 RLEGSDHAPVYMCLGEV 317 (621)
Q Consensus 301 ~~~gSDH~PV~~~L~~~ 317 (621)
-..|||.||.++|...
T Consensus 243 -~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 243 -RVASDHLPLLAELRLK 258 (259)
T ss_pred -cccccccceEEEEecC
Confidence 3689999999999753
No 12
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-15 Score=157.04 Aligned_cols=249 Identities=20% Similarity=0.238 Sum_probs=133.7
Q ss_pred CeEEEeecccccc----cchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEE
Q 007013 1 MKIVTYNVNGLRQ----RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVA 76 (621)
Q Consensus 1 mkIvSwNInGlr~----~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVA 76 (621)
|||++.|++|+.- +..|.+.+.+++.+...||+.|||+|...+.-...-.+..-|.+...+. .|-.| +|++
T Consensus 9 lriltlN~Wgip~~Sk~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~FH----SGimG-aGL~ 83 (422)
T KOG3873|consen 9 LRILTLNIWGIPYVSKDRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHYFH----SGIMG-AGLC 83 (422)
T ss_pred eeeeEeeccccccccchhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHhhh----ccccc-CceE
Confidence 6899999999852 1222235888999999999999999976653221122344454322222 24445 6999
Q ss_pred EEEeecCCCCCccccccceeeecccCccc---ccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEE--cCCCC
Q 007013 77 TFCRVKSPFSSTEVALPVAAEEGFTGLLE---TSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVY--GPRAD 151 (621)
Q Consensus 77 Il~K~~~~f~~~~~~~Pi~~eegltgl~~---~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY--~P~~~ 151 (621)
+|+|.+|-- -......+.|.+. .++.+.+++++ +..+...|| .+.+.|.| +|.+.
T Consensus 84 vfSK~PI~~-------t~~~~y~lNG~p~~i~rGDWf~GK~Vg------l~~l~~~g~-------~v~~yntHLHAeY~r 143 (422)
T KOG3873|consen 84 VFSKHPILE-------TLFHRYSLNGYPHAIHRGDWFGGKGVG------LTVLLVGGR-------MVNLYNTHLHAEYDR 143 (422)
T ss_pred EeecCchhh-------hhhhccccCCccceeeeccccccceeE------EEEEeeCCE-------Eeeeeehhccccccc
Confidence 999985410 0111122333322 11122221111 111111121 12333333 34444
Q ss_pred Cch---hHHHHH---HHHHHHHHc--CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccC
Q 007013 152 SED---TVRIQF---KLQFFHVLQ--GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223 (621)
Q Consensus 152 ~~~---~eR~~~---k~~fl~~L~--g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h 223 (621)
..+ ..|..+ ..+|++... +.-||++||||..|.++-++ +|..+| |+|+|+..|
T Consensus 144 q~D~YL~HR~~QAwdlaqfi~~t~q~~~vVI~~GDLN~~P~dl~~~-----------------ll~~a~--l~daw~~~h 204 (422)
T KOG3873|consen 144 QNDEYLCHRVAQAWDLAQFIRATRQNADVVILAGDLNMQPQDLGHK-----------------LLLSAG--LVDAWTSLH 204 (422)
T ss_pred cCchhhhHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCcccccee-----------------eeeccc--hhhhHhhhc
Confidence 322 223332 344555544 78899999999877665332 222344 778887777
Q ss_pred CCC---------------CCCcccCCCCC-----CCc-ccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecc
Q 007013 224 PER---------------REAYTCWPSNT-----GAE-QFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILID 282 (621)
Q Consensus 224 P~~---------------~~~yT~ws~~~-----~ar-~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~ 282 (621)
+.. +|. ||-+... ..+ +.-.+.||||+|+.++.+. ....++++...
T Consensus 205 ~~q~e~~~~r~s~~~~l~~g~-tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~------------~~~a~~~~t~~ 271 (422)
T KOG3873|consen 205 LDQCESDSFRLSEDKELVEGN-TCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCN------------AKIAEVEFTEP 271 (422)
T ss_pred hhhhcCcccccchhhhhhcCC-cccCcchhhhHHHhCCCCccceeeeEEEEcCcceE------------EEeeeEEecCC
Confidence 653 122 4433211 111 1224889999999987532 13444554332
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCcceEEEEeccCC
Q 007013 283 YKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEVPE 319 (621)
Q Consensus 283 ~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~~~ 319 (621)
+.+ ..+...|||..+.++|.+...
T Consensus 272 -rvP------------~~d~s~SDH~Al~a~L~I~~~ 295 (422)
T KOG3873|consen 272 -RVP------------GEDCSYSDHEALMATLKIFKQ 295 (422)
T ss_pred -CCC------------CCCCCccchhhheeEEEeecC
Confidence 211 224578999999999987653
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.60 E-value=4.4e-14 Score=147.34 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=29.1
Q ss_pred CeEEEeeccccccc-------chhhhHHHHHHhhcCCcEEEEeccch
Q 007013 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKL 40 (621)
Q Consensus 1 mkIvSwNInGlr~~-------~~r~~~l~~~L~~l~aDIIcLQETk~ 40 (621)
||||||||+.+... -.|...|...+...++|||||||+.-
T Consensus 1 lkVmtyNv~~l~~~~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~ 47 (283)
T TIGR03395 1 IKILSHNVYMLSTNLYPNWGQMERADLIASADYIKNQDVVILNEAFD 47 (283)
T ss_pred CeEEEEEeeeecccccCCccHhHHHHHHHHhhcccCCCEEEEecccc
Confidence 79999999864321 22323466677888999999999964
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.53 E-value=3.6e-13 Score=165.29 Aligned_cols=258 Identities=19% Similarity=0.233 Sum_probs=130.4
Q ss_pred CeEEEeecccccc---cchhhhHHHHHHhhc-CCcEEEEeccchhh-------------hchhHHHHhhcCCeEEeeccc
Q 007013 1 MKIVTYNVNGLRQ---RVSQFGSLRKLLDSF-DADIICFQETKLRR-------------QELKSDLVMADGYESFFSCTR 63 (621)
Q Consensus 1 mkIvSwNInGlr~---~~~r~~~l~~~L~~l-~aDIIcLQETk~t~-------------~~l~~~l~~~~GY~~~~s~~~ 63 (621)
+||+||||+.+.. .... ..+..+|+.+ ++|||||||+.-.. ..+ .+.+...||..|.....
T Consensus 11 l~VlTyNv~~~~~~~~~~~~-~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~~ 88 (1452)
T PTZ00297 11 ARVLSYNFNILPRGCGGFQH-ERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKML-VDELKARGFHHYVISKQ 88 (1452)
T ss_pred eEEEEEEccccCCCcccccH-HHHHHHHHhccCCCEEEEecccccccccccccccchhhHHH-HHHHHhcCCceeEeecC
Confidence 6899999985532 1222 2488899995 77999999996421 111 12334568866543221
Q ss_pred CCCCC-----CCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEEEe
Q 007013 64 TSDKG-----RTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH 137 (621)
Q Consensus 64 ~~~~g-----r~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~~ 137 (621)
..-.. --+..|+||++|.+ |...+.+. +.. ....++ .-.-|- .+.++.
T Consensus 89 ~~~~~~~~~~~~~~~G~AILSR~P-----------I~~~~~~~-l~~-------~~~~~~-------~~~RG~L~a~I~v 142 (1452)
T PTZ00297 89 PSYLTMLRYNVCSDNGLIIASRFP-----------IWQRGSYT-FRN-------HERGEQ-------SVRRGCLFAEVEV 142 (1452)
T ss_pred ccccccccCccccCCEEEEEECCC-----------hhhceeee-cCc-------cccccc-------ccccceEEEEEEc
Confidence 10000 01335999999984 33222110 000 000000 001121 122332
Q ss_pred -------CcEEEEEEEcCCCCC--chhHHHHHHHHHHHH-H----------cCCcEEEEcccCCCCCccccCCCCCCCCc
Q 007013 138 -------GHFILFNVYGPRADS--EDTVRIQFKLQFFHV-L----------QGRRIFVVGDLNIAPAAIDRCDAGPDFAK 197 (621)
Q Consensus 138 -------~~~~LinVY~P~~~~--~~~eR~~~k~~fl~~-L----------~g~~VII~GDFN~~~~~iD~~~~~~~f~~ 197 (621)
+.+.++|+|+-.... ...+|.....+|+.. + ...|+||+||||+.. +|+..... ..
T Consensus 143 p~~~g~~~~v~v~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~~~~--~s 218 (1452)
T PTZ00297 143 PLAEGGSQRIVFFNVHLRQEDSLPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNING--IDPHNGGH--PT 218 (1452)
T ss_pred cccCCCCceEEEEEeCCCCCCCcchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCcc--ccccccCC--cc
Confidence 368999999865432 234455556666654 2 156899999999642 22211100 11
Q ss_pred hHHHHHHHHHHHHcCCceeeeeccc---CCCCCCCcccCCCCC-CCcccCCcceEEEEEEeCCCcccccccccccccccc
Q 007013 198 NEFRIWFRSMLVESGGSFFDVFRSK---HPERREAYTCWPSNT-GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCH 273 (621)
Q Consensus 198 ~~~r~~l~~lL~~~g~~L~D~~R~~---hP~~~~~yT~ws~~~-~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~ 273 (621)
.+....++.+ ...+.++.|+++.. ||...+..+||.... -.+......||||||+++.+ .
T Consensus 219 ~e~~~ml~~l-~~~~~~l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v---------------~ 282 (1452)
T PTZ00297 219 KRFQELLNEL-QDLGSGVREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCV---------------Q 282 (1452)
T ss_pred HHHHHHHHHh-hhccccHhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCc---------------e
Confidence 1222222222 22233355544333 333333355555331 11111224699999998754 5
Q ss_pred eeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEEEecc
Q 007013 274 VNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGEV 317 (621)
Q Consensus 274 V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~~ 317 (621)
|.++.|...... ....| ...|||+||.++|...
T Consensus 283 v~~~~v~~~~~~----~~~~~-------~~~SDH~Pv~a~l~l~ 315 (1452)
T PTZ00297 283 VEKPRIEKFVVS----SRRPY-------TYLSDHFGVSARLTLP 315 (1452)
T ss_pred EEEEEEeccccc----CCCCC-------CCcCcCccEEEEEEeC
Confidence 666666432110 00112 4789999999999863
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-13 Score=135.42 Aligned_cols=191 Identities=16% Similarity=0.207 Sum_probs=113.0
Q ss_pred eEEEeecccc--cccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCC-eEEeecccCCCCCCCCceEEEEE
Q 007013 2 KIVTYNVNGL--RQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATF 78 (621)
Q Consensus 2 kIvSwNInGl--r~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~~s~~~~~~~gr~GysGVAIl 78 (621)
.+++|||.|| |+...|.+++..+|..+.||||||||+--..... +-....| ..|+. ...+|.|.+++
T Consensus 101 S~~~WnidgLdln~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~---~~K~~s~y~i~~~-------~~~~~~~~~~l 170 (349)
T KOG2756|consen 101 SLITWNIDGLDLNNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSY---LKKRSSNYEIITG-------HEEGYFTAIML 170 (349)
T ss_pred EEEEeeccccccchHHHHHHHHHHHHHhcCCCEEEEeecCchhhHH---HHHhhhheeEEEe-------ccceeeeeeee
Confidence 5789999997 4334455679999999999999999985322221 1122333 33333 23567888888
Q ss_pred EeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEE-EE----eCcEEEEEEEcCCCCCc
Q 007013 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI-TD----HGHFILFNVYGPRADSE 153 (621)
Q Consensus 79 ~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii-v~----~~~~~LinVY~P~~~~~ 153 (621)
.+..+..+..+ .+ ++. -...+|-+. ++ +..++|++.|+-.....
T Consensus 171 ~~s~~~Vks~~---------~i--------~F~--------------NS~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h 219 (349)
T KOG2756|consen 171 KKSRVKVKSQE---------II--------PFP--------------NSKMMRNLLIVEVNVSGNKLCLMTSHLESTRGH 219 (349)
T ss_pred ehhhcCccccc---------ee--------ccC--------------cchhhheeEEEEEeecCceEEEEeccccCCCCC
Confidence 77643322211 00 000 012345443 22 24588999998554444
Q ss_pred hhHHHHHHHHHHHH-------HcCCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccC-CC
Q 007013 154 DTVRIQFKLQFFHV-------LQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH-PE 225 (621)
Q Consensus 154 ~~eR~~~k~~fl~~-------L~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h-P~ 225 (621)
.++|..+...-++. +.+..||++||+|......-+|.. ++ +++|+|..+. |.
T Consensus 220 ~P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~NlrD~ev~r~~l-----PD---------------~~vDvWE~lg~p~ 279 (349)
T KOG2756|consen 220 APERMNQFKMVLKKMQEAIESLPNATVIFGGDTNLRDREVTRCGL-----PD---------------NIVDVWEFLGKPK 279 (349)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccchhhhcccCCC-----Cc---------------hHHHHHHHhCCCC
Confidence 46665432222222 228899999999975443322211 11 3789999888 66
Q ss_pred CCCCcccCCCCCCCcccCCc--ceEEEEEEe
Q 007013 226 RREAYTCWPSNTGAEQFNYG--TRIDHILCA 254 (621)
Q Consensus 226 ~~~~yT~ws~~~~ar~~n~g--sRIDyIL~s 254 (621)
.. .|||-.........+.+ .|+|+||+.
T Consensus 280 ~~-~FTwDT~~N~nl~G~~a~k~RfDRi~~r 309 (349)
T KOG2756|consen 280 HC-QFTWDTQMNSNLGGTAACKLRFDRIFFR 309 (349)
T ss_pred cC-ceeeecccCcccchhHHHHHHHHHHhhh
Confidence 55 49997776554444433 599999994
No 16
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.44 E-value=4.4e-12 Score=129.70 Aligned_cols=149 Identities=15% Similarity=0.228 Sum_probs=83.8
Q ss_pred CeEEEeecccccccch-hhh-HHHHHHhhc-CCcEEEEeccchhhhc--------------hh-HHH-H-----hhcCCe
Q 007013 1 MKIVTYNVNGLRQRVS-QFG-SLRKLLDSF-DADIICFQETKLRRQE--------------LK-SDL-V-----MADGYE 56 (621)
Q Consensus 1 mkIvSwNInGlr~~~~-r~~-~l~~~L~~l-~aDIIcLQETk~t~~~--------------l~-~~l-~-----~~~GY~ 56 (621)
+|+.|||..|-....+ ++. .+.++|... .+||++|||+-.-... +. .+. + ...++.
T Consensus 25 ~~~~twn~qg~s~~~~~kw~~~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~v~ey~w~l~~~srpgm~ 104 (271)
T PRK15251 25 YKVATWNLQGSSASTESKWNVNVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIPIDEYTWNLGTRSRPNQV 104 (271)
T ss_pred ceEEEeecCCCCCCChhhhhhhHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccCcccEEEEccCccCCCce
Confidence 4899999999854333 222 488888875 5999999998422111 01 000 0 123455
Q ss_pred EEeecccCCCCCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEE
Q 007013 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD 136 (621)
Q Consensus 57 ~~~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~ 136 (621)
+||+.... .+ .|..|+||++|.+. ....-+. + | ......++.++
T Consensus 105 YiY~~aiD--~~-ggr~glAIlSr~~a-----------~~~~~l~-~-----p----------------~~~~Rpilgi~ 148 (271)
T PRK15251 105 YIYYSRVD--VG-ANRVNLAIVSRRRA-----------DEVIVLR-P-----P----------------TVASRPIIGIR 148 (271)
T ss_pred EEEEeccc--CC-CCceeEEEEecccc-----------cceEEec-C-----C----------------CCcccceEEEE
Confidence 54443321 22 35569999999842 1111110 0 0 01133455667
Q ss_pred eCcEEEEEEEcCCCCC-chhHHHHHHHHHHH-HHcCCcEEEEcccCCCCCc
Q 007013 137 HGHFILFNVYGPRADS-EDTVRIQFKLQFFH-VLQGRRIFVVGDLNIAPAA 185 (621)
Q Consensus 137 ~~~~~LinVY~P~~~~-~~~eR~~~k~~fl~-~L~g~~VII~GDFN~~~~~ 185 (621)
++.++++++|+...+. +..+.++....+.. .....++||+||||..++.
T Consensus 149 i~~~~ffstH~~a~~~~da~aiV~~I~~~f~~~~~~~pw~I~GDFNr~P~s 199 (271)
T PRK15251 149 IGNDVFFSIHALANGGTDAGAIVRAVHNFFRPNMRHINWMIAGDFNRSPDR 199 (271)
T ss_pred ecCeEEEEeeecCCCCccHHHHHHHHHHHHhhccCCCCEEEeccCCCCCcc
Confidence 7789999999988843 22222333333332 2214689999999976654
No 17
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=99.38 E-value=3.5e-13 Score=101.46 Aligned_cols=45 Identities=40% Similarity=0.897 Sum_probs=41.1
Q ss_pred CCCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCceeecCCC
Q 007013 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSK 617 (621)
Q Consensus 566 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~ 617 (621)
|.|. |+++|++++++|.|+|.||.||.|++... .+|+||+|.|+.
T Consensus 1 p~C~-Cg~~~~~~~s~k~~~N~GR~Fy~C~~~~~------~~C~fF~W~De~ 45 (45)
T PF06839_consen 1 PKCP-CGEPAVRRTSKKTGPNPGRRFYKCPNYKD------KGCNFFQWEDEM 45 (45)
T ss_pred CCCC-CCCEeEEEEEeCCCCCCCCcceECCCCCC------CCcCCEEeccCc
Confidence 7899 99999999999999999999999998633 789999999973
No 18
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.34 E-value=4.3e-12 Score=113.84 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=52.1
Q ss_pred EEEEEEEcCCCCCchhHHHHHHHHHHHHHc---CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcee
Q 007013 140 FILFNVYGPRADSEDTVRIQFKLQFFHVLQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 216 (621)
Q Consensus 140 ~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~ 216 (621)
|+|+|||+|+.. ++..+...+...+. ..++||+||||..+..++.... .....+.|.+++.+.+ |.
T Consensus 1 i~i~~vY~pp~~----~~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~-----~~~~~~~l~~~~~~~~--l~ 69 (119)
T PF14529_consen 1 ITIISVYAPPSS----EREEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNT-----NSRRGEQLLDWLDSHN--LV 69 (119)
T ss_dssp EEEEEEE--TTS-----CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCH-----HHHHHHHHHHHHHHCT--EE
T ss_pred CEEEEEECCCCc----cHHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhccc-----cchhHHHHHHHhhhce--ee
Confidence 579999999976 22244444444444 2389999999997666543211 1022455777887776 77
Q ss_pred eeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcc
Q 007013 217 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLH 259 (621)
Q Consensus 217 D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~ 259 (621)
++ ++... .|||++... ++|||+||++..+..
T Consensus 70 ~~----~~~~~-~~T~~~~~~-------~s~iD~~~~s~~~~~ 100 (119)
T PF14529_consen 70 DL----NPPGR-PPTFISNSH-------GSRIDLILTSDNLLS 100 (119)
T ss_dssp E-------TT----SEEECCC-------EE--EEEEEECCGCC
T ss_pred ee----ecCCC-CCcccCCCC-------CceEEEEEECChHHh
Confidence 77 33323 399988764 689999999998643
No 19
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=99.29 E-value=6.8e-11 Score=127.79 Aligned_cols=139 Identities=24% Similarity=0.304 Sum_probs=85.7
Q ss_pred hHHHHHHhhcCCcEEEEeccchhhhc-hhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEeecCCCCCccccccceee
Q 007013 19 GSLRKLLDSFDADIICFQETKLRRQE-LKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAE 97 (621)
Q Consensus 19 ~~l~~~L~~l~aDIIcLQETk~t~~~-l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~e 97 (621)
..|+..|...+|||+||||+...... +...+....||..+|... -+ .+-.||||+++.. +|+.... .++..-
T Consensus 152 ~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~----t~-~KthG~ai~w~~~-~F~lv~~-~~l~y~ 224 (495)
T KOG2338|consen 152 QNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRR----TG-TKTHGVAILWHSA-KFKLVNH-SELNYF 224 (495)
T ss_pred HHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEEEec----cC-CCCceEEEEEecc-cceeccc-chhhcc
Confidence 46999999999999999999754322 223345568999877643 12 2236999999983 5654311 111111
Q ss_pred ecccCcccccccccccCccccccccccccCCCCcEEEEEe-------CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc-
Q 007013 98 EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH-------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ- 169 (621)
Q Consensus 98 egltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~-------~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~- 169 (621)
+.. ..+...|.-|-+|.+++ +.+.|+|.|+=.......+|+.+--.+++.++
T Consensus 225 ~~~--------------------~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~ 284 (495)
T KOG2338|consen 225 DSG--------------------SALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDVRLAQVYIILAELEK 284 (495)
T ss_pred ccc--------------------chhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccchhhHHHHHHHHHHHH
Confidence 000 11234455565655554 25788888874443334566666555555554
Q ss_pred -------CCcEEEEcccCCCCC
Q 007013 170 -------GRRIFVVGDLNIAPA 184 (621)
Q Consensus 170 -------g~~VII~GDFN~~~~ 184 (621)
+-|+|+|||||+.++
T Consensus 285 ~~~~~~~~~pi~l~GDfNt~p~ 306 (495)
T KOG2338|consen 285 MSKSSKSHWPIFLCGDFNTEPD 306 (495)
T ss_pred HHhhcccCCCeEEecCCCCCCC
Confidence 449999999999875
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.23 E-value=5.1e-11 Score=123.16 Aligned_cols=141 Identities=18% Similarity=0.158 Sum_probs=80.6
Q ss_pred eEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEee
Q 007013 2 KIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCRV 81 (621)
Q Consensus 2 kIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K~ 81 (621)
++++.|++.-+....+ ++..+...++|+|.+||+..-..... ......|..|..+. .+ .|-.|+++++|.
T Consensus 90 ~~l~~N~r~~n~~~~k---~Lsl~~~~~~D~v~~~E~~~~~~~~~--~~l~~~yP~~~~~~----~~-~~~~~~a~~sr~ 159 (309)
T COG3021 90 WNLQKNVRFDNASVAK---LLSLIQQLDADAVTTPEGVQLWTAKV--GALAAQYPAFILCQ----HP-TGVFTLAILSRR 159 (309)
T ss_pred hhhhhhccccCcCHHH---HHHHHhhhCcchhhhHHHHHHhHhHH--HHHHHhCCceeecC----CC-CCeeeeeecccc
Confidence 5677887776655554 88888888899999999964322221 13456676655543 22 255688898887
Q ss_pred cCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEE----EeCcEEEEEEEcCCCCCchhHH
Q 007013 82 KSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVIT----DHGHFILFNVYGPRADSEDTVR 157 (621)
Q Consensus 82 ~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv----~~~~~~LinVY~P~~~~~~~eR 157 (621)
. |.+.. ++.+. .....++.+.. +...+.|+++|.-+........
T Consensus 160 ~--------~~~~~--~~e~~----------------------~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~~~~ 207 (309)
T COG3021 160 P--------CCPLT--EAEPW----------------------LRLPKSALATAYPLPDGTELTVVALHAVNFPVGTDPQ 207 (309)
T ss_pred c--------ccccc--ccCcc----------------------ccCCccceeEEEEcCCCCEEEEEeeccccccCCccHH
Confidence 2 11221 11111 11223333322 2346788888876433222222
Q ss_pred HHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 007013 158 IQFKLQFFHVLQ--GRRIFVVGDLNIAPA 184 (621)
Q Consensus 158 ~~~k~~fl~~L~--g~~VII~GDFN~~~~ 184 (621)
..+..+..+.+. ..+||++||||+.+-
T Consensus 208 ~~ql~~l~~~i~~~~gpvIlaGDfNa~pW 236 (309)
T COG3021 208 RAQLLELGDQIAGHSGPVILAGDFNAPPW 236 (309)
T ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCcch
Confidence 233444444444 789999999998643
No 21
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.00 E-value=1.5e-08 Score=105.26 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=76.9
Q ss_pred CeEEEeecccccccch----hhhHHHHHHhhcCCcEEEEeccchhhhchhHHHH------hhcCCeEEeecccCCCCCCC
Q 007013 1 MKIVTYNVNGLRQRVS----QFGSLRKLLDSFDADIICFQETKLRRQELKSDLV------MADGYESFFSCTRTSDKGRT 70 (621)
Q Consensus 1 mkIvSwNInGlr~~~~----r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~------~~~GY~~~~s~~~~~~~gr~ 70 (621)
|||+||||+.+..... +...|.++|. ++|||++||+.-........++ ...+|..+.+.. -|+.
T Consensus 18 l~I~SfNIr~fgd~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y~~v~s~r----~gr~ 91 (276)
T smart00476 18 LRICAFNIQSFGDSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTYSYVSSEP----LGRN 91 (276)
T ss_pred EEEEEEECcccCCccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCceEEecCC----CCCC
Confidence 6899999985432211 1234666666 8899999999643221111111 123788776643 2333
Q ss_pred Cc-eEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe-----CcEEEEE
Q 007013 71 GY-SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH-----GHFILFN 144 (621)
Q Consensus 71 Gy-sGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~-----~~~~Lin 144 (621)
+| --.++++|.+ -+...+..+ +... +. +.. ..+..+--++.... ..|+|++
T Consensus 92 ~~~E~~a~~Yr~d----------rv~v~~~~~-f~d~--~~--~~~--------~~F~ReP~~~~F~~~~~~~~~F~li~ 148 (276)
T smart00476 92 SYKEQYLFLYRSD----------LVSVLDSYL-YDDG--CE--CGN--------DVFSREPFVVKFSSPSTAVKEFVIVP 148 (276)
T ss_pred CCCEEEEEEEecc----------eEEEcccce-ecCC--CC--Ccc--------ccccccceEEEEEeCCCCCccEEEEE
Confidence 32 3478888874 122211110 0000 00 000 01112222222221 3699999
Q ss_pred EEcCCCCCchhHHHHHHHH-HHHHHc---CCcEEEEcccCCCC
Q 007013 145 VYGPRADSEDTVRIQFKLQ-FFHVLQ---GRRIFVVGDLNIAP 183 (621)
Q Consensus 145 VY~P~~~~~~~eR~~~k~~-fl~~L~---g~~VII~GDFN~~~ 183 (621)
+|.-+... ..+++.... |+...+ ..++||+||||+..
T Consensus 149 ~H~~p~~~--~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~ 189 (276)
T smart00476 149 LHTTPEAA--VAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGC 189 (276)
T ss_pred ecCChHHH--HHHHHHHHHHHHHHHHhhccCCEEEEccCCCCC
Confidence 99965432 222322222 333333 78999999999843
No 22
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.95 E-value=1.5e-08 Score=107.19 Aligned_cols=149 Identities=21% Similarity=0.180 Sum_probs=83.4
Q ss_pred eEEEeecccccccchhhhHHHHHHhh-------cCCcE--EEEecc-chhhhch-----------hHHHH--hh--cCCe
Q 007013 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------FDADI--ICFQET-KLRRQEL-----------KSDLV--MA--DGYE 56 (621)
Q Consensus 2 kIvSwNInGlr~~~~r~~~l~~~L~~-------l~aDI--IcLQET-k~t~~~l-----------~~~l~--~~--~GY~ 56 (621)
-|+||||+|....... .+..+|.. ..+|| |.|||. .+....+ ...+. .. ..|.
T Consensus 6 ~v~TwNv~~~~~~p~~--~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~ 83 (310)
T smart00128 6 LVGTWNVGGLKADPKV--DVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYN 83 (310)
T ss_pred EEEEEECCCccCCChh--hHHHhhccccccccCCCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceE
Confidence 5789999997522221 37777765 67999 669998 2211110 00011 11 3454
Q ss_pred EEeecccCCCCCCCCceEEEEEEeecCCCCCccccccce---eeecccCcccccccccccCccccccccccccCCCCcEE
Q 007013 57 SFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVA---AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV 133 (621)
Q Consensus 57 ~~~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~---~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i 133 (621)
...+.. .+.-++.||+|....... ..+. +..|+.|+ ..+..|+++
T Consensus 84 ~v~~~~-------l~gi~l~vf~~~~~~~~i----~~v~~~~v~~G~~~~---------------------~~nKG~v~i 131 (310)
T smart00128 84 VLAKVR-------LVGILVLVFVKANHLVYI----KDVETFTVKTGMGGL---------------------WGNKGAVAV 131 (310)
T ss_pred EEeeee-------ecceEEEEEEehhhcCcc----ceeEeeeeeccccce---------------------eecCceEEE
Confidence 433321 333578888887532111 1111 11222111 124566777
Q ss_pred EEEeC--cEEEEEEEcCCCCCchhHHHHHHHHHHHHHc-----------CCcEEEEcccCCCCC
Q 007013 134 ITDHG--HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-----------GRRIFVVGDLNIAPA 184 (621)
Q Consensus 134 iv~~~--~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~-----------g~~VII~GDFN~~~~ 184 (621)
.+... .|.++|+|+++.......|.......++.+. ..++|++||||-..+
T Consensus 132 ~~~~~~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 132 RFKLSDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred EEEEcCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 66654 4999999999977644556555555555442 578999999997654
No 23
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=98.82 E-value=3.7e-08 Score=102.99 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=51.9
Q ss_pred CeEEEeeccc---cccc-----------chhhhHHHHHHhhcCCcEEEEeccchhh-hchhHHHHhhcCCeEEeecccCC
Q 007013 1 MKIVTYNVNG---LRQR-----------VSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRTS 65 (621)
Q Consensus 1 mkIvSwNInG---lr~~-----------~~r~~~l~~~L~~l~aDIIcLQETk~t~-~~l~~~l~~~~GY~~~~s~~~~~ 65 (621)
++|+|||+-. ++.. -.|++.|++.|...+|||+||||+.... ..+-.+.+-..||+..|.....+
T Consensus 31 ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k 110 (378)
T COG5239 31 FTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERK 110 (378)
T ss_pred eEEEehhhhhhhhccccccCCchhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEecCCCc
Confidence 4799999843 1111 1123468889999999999999997543 23444556678999877643211
Q ss_pred CC-----CCCCceEEEEEEee
Q 007013 66 DK-----GRTGYSGVATFCRV 81 (621)
Q Consensus 66 ~~-----gr~GysGVAIl~K~ 81 (621)
.+ ..+.-.|++|+.+.
T Consensus 111 ~~~m~~~d~t~~dGc~if~k~ 131 (378)
T COG5239 111 VKWMIDYDTTKVDGCAIFLKR 131 (378)
T ss_pred ccccccccccccceEEEEEEe
Confidence 00 11123599999987
No 24
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=98.74 E-value=2.7e-08 Score=106.72 Aligned_cols=85 Identities=24% Similarity=0.343 Sum_probs=51.5
Q ss_pred CeEEEeeccccccc---------------chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecc-cC
Q 007013 1 MKIVTYNVNGLRQR---------------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCT-RT 64 (621)
Q Consensus 1 mkIvSwNInGlr~~---------------~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~-~~ 64 (621)
.+|+|||+...... ..|+..++..|...+|||+||||+ .....+..+.+...||.+.|..- +.
T Consensus 20 ~~v~s~n~l~~~~~~~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev-~~~~~~~~p~l~~~gY~g~~~~k~~~ 98 (361)
T KOG0620|consen 20 FTVLSYNILSQLYATSKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEV-DRYHDFFSPELEASGYSGIFIEKTRM 98 (361)
T ss_pred EEeechhhhhhhhcccCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchh-hHHHHHccchhhhcCCcceeeccccc
Confidence 36889998543211 112235788888889999999999 33223333344556999977641 10
Q ss_pred CCCCCCCceEEEEEEeecCCCCC
Q 007013 65 SDKGRTGYSGVATFCRVKSPFSS 87 (621)
Q Consensus 65 ~~~gr~GysGVAIl~K~~~~f~~ 87 (621)
....+++-.|+|||.|.. .|++
T Consensus 99 ~~~~~~~~dGcaiffk~s-~f~l 120 (361)
T KOG0620|consen 99 GEVELEKIDGCAIFFKPS-LFQL 120 (361)
T ss_pred chhhcccCceeeeeecch-HHhh
Confidence 001234457999999873 4443
No 25
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=9.4e-05 Score=85.54 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=29.5
Q ss_pred CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---------CCcEEEEcccCCC
Q 007013 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIA 182 (621)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---------g~~VII~GDFN~~ 182 (621)
..|.+++-|.-++...-+||-.-...+.+.|. ...|++|||||..
T Consensus 673 TsfCFv~SHlAAG~snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYR 726 (1080)
T KOG0566|consen 673 TSFCFVCSHLAAGQSNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYR 726 (1080)
T ss_pred ccEEEEecccccccchHhhhhhhHHHHHHhccccCCccccCCceEEEeccccee
Confidence 35788888886655433444433334555554 6789999999974
No 26
>KOG1956 consensus DNA topoisomerase III alpha [Replication, recombination and repair]
Probab=97.43 E-value=5.6e-05 Score=84.16 Aligned_cols=40 Identities=30% Similarity=0.752 Sum_probs=35.2
Q ss_pred CCCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCceeec
Q 007013 566 PLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWA 614 (621)
Q Consensus 566 p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~ 614 (621)
..|. |+..++.++|.|.|||.||.||.|..+ ..|+||.|+
T Consensus 719 ~~c~-c~~ra~~l~v~k~~~nrGR~f~sc~~~--------k~c~ff~w~ 758 (758)
T KOG1956|consen 719 VTCG-CGTRAVKLLVAKTEPNRGRKFYSCLPE--------KSCNFFAWE 758 (758)
T ss_pred cccC-CcchhhhhhhhccCccCCCCCcccCCC--------CCcceEeeC
Confidence 4788 999889999999999999999999743 459999996
No 27
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.11 E-value=0.0065 Score=69.68 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCcEEEEeccch
Q 007013 20 SLRKLLDSFDADIICFQETKL 40 (621)
Q Consensus 20 ~l~~~L~~l~aDIIcLQETk~ 40 (621)
.+...|..+++||+.|-|..-
T Consensus 506 k~v~ai~~ldaDV~GL~Eien 526 (798)
T COG2374 506 KIVTAILTLDADVLGLMEIEN 526 (798)
T ss_pred HHHHHHhhcchhhheeeeeec
Confidence 488889999999999999864
No 28
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=95.49 E-value=0.1 Score=59.27 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=28.6
Q ss_pred CcEEEEEEEcCCCCCc-h-hHHHHHHHHHHHHHc---------------CCcEEEEcccCCCCC
Q 007013 138 GHFILFNVYGPRADSE-D-TVRIQFKLQFFHVLQ---------------GRRIFVVGDLNIAPA 184 (621)
Q Consensus 138 ~~~~LinVY~P~~~~~-~-~eR~~~k~~fl~~L~---------------g~~VII~GDFN~~~~ 184 (621)
..|+++|.|+.++... . ..|..-...+++.+. ...+|++||||...+
T Consensus 420 Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 420 SRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred cEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 5799999999875432 1 223332222332221 458999999997654
No 29
>KOG4399 consensus C2HC-type Zn-finger protein [General function prediction only]
Probab=94.54 E-value=0.021 Score=57.63 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=39.6
Q ss_pred CCCCCCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCceeecCCCCC
Q 007013 563 TSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFSKSK 619 (621)
Q Consensus 563 ~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~~~~ 619 (621)
.++|+|. || ||. +-||+.|+---|.||+|+.-+ +...-|+||+|.++...
T Consensus 11 ~~~P~C~-HG-P~L-LF~K~~~~E~~~~F~ACs~~R----~d~kfC~F~~~~d~~~~ 60 (325)
T KOG4399|consen 11 VPAPLCP-HG-PTL-LFVKVTQKEETRRFYACSACR----MDDKFCHFFMFEDEFFD 60 (325)
T ss_pred CCCCcCC-CC-CeE-EEEEccCcchheeeehhhhhh----cchhccchhhhcccccC
Confidence 5789999 87 554 557899999999999998632 23567999999997644
No 30
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=91.81 E-value=0.44 Score=52.11 Aligned_cols=45 Identities=22% Similarity=0.124 Sum_probs=29.2
Q ss_pred CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---------CCcEEEEcccCCC
Q 007013 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIA 182 (621)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---------g~~VII~GDFN~~ 182 (621)
..|.++|.|+-.....-++|..-.......|. ...++++||||..
T Consensus 165 t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 165 TSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred CCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 45778888876655444566544444444443 5679999999964
No 31
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=65.58 E-value=9.5 Score=27.75 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=25.7
Q ss_pred CCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCceeecCC
Q 007013 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFKWAFS 616 (621)
Q Consensus 567 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~W~~~ 616 (621)
.|..|+.+-+.+..++ | .||.|++- -.|.|..|..+
T Consensus 3 ~CP~Cg~~lv~r~~k~-----g-~F~~Cs~y--------P~C~~~~~~~~ 38 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKK-----G-KFLGCSNY--------PECKYTEPLPK 38 (39)
T ss_pred CCCCCCceeEEEECCC-----C-CEEECCCC--------CCcCCeEeCCC
Confidence 5777887766666544 2 99999751 26999999764
No 32
>PF06373 CART: Cocaine and amphetamine regulated transcript protein (CART); InterPro: IPR009106 The cocaine and amphetamine regulated transcript (CART) is a brain-localised peptide that acts as a satiety factor in appetite regulation. CART was found to inhibit both normal and starvation-induced feeding, and completely blocks the feeding response induced by neuropeptide Y. CART is regulated by leptin in the hypothalamus, and can be transcriptionally induced after cocaine or amphetamine administration []. Posttranslational processing of CART produces an N-terminal CART peptide and a C-terminal CART peptide. The C-terminal CART peptide has been isolated from the hypothalamus, nucleus accumbens, and the anterior pituitary lobe in rats. C-terminal CART is the biologically active part of the molecule affecting food intake. The structure of C-terminal CART consists of a disulphide-bound fold containing a beta-hairpin and two adjacent disulphide bridges [].; GO: 0000186 activation of MAPKK activity, 0001678 cellular glucose homeostasis, 0007186 G-protein coupled receptor protein signaling pathway, 0008343 adult feeding behavior, 0009267 cellular response to starvation, 0032099 negative regulation of appetite, 0005615 extracellular space; PDB: 1HY9_A.
Probab=62.81 E-value=2.6 Score=34.53 Aligned_cols=44 Identities=32% Similarity=0.862 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCcee
Q 007013 551 LLEWRRIQQLMETSIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 612 (621)
Q Consensus 551 ~~~w~~~~~~~~~~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 612 (621)
...|.+= ...+|.|. -||.|.+| .||-.||. --|+| | ..||||+
T Consensus 26 ~p~~EKK----~g~vP~Cd-~GE~CAvr----kG~RIGkl-CdC~r--G------~~CN~fl 69 (73)
T PF06373_consen 26 IPSWEKK----YGQVPSCD-VGEQCAVR----KGPRIGKL-CDCPR--G------TSCNFFL 69 (73)
T ss_dssp ----------------B---SSS-SEEE-----SSSEEE---B--T--T--------B-TTT
T ss_pred CChhhhh----cCcCCCCC-CCchhhhc----cccccccc-cCCCC--C------CchhhhH
Confidence 3456652 23589999 99999754 38888884 34544 3 7899996
No 33
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=52.97 E-value=11 Score=43.57 Aligned_cols=35 Identities=34% Similarity=0.416 Sum_probs=24.4
Q ss_pred EEEeecccccccchhhhHHHHHHhhcCC-cE--EEEeccc
Q 007013 3 IVTYNVNGLRQRVSQFGSLRKLLDSFDA-DI--ICFQETK 39 (621)
Q Consensus 3 IvSwNInGlr~~~~r~~~l~~~L~~l~a-DI--IcLQETk 39 (621)
|+||||+|-..+..- .|..+|...++ || |.|||+-
T Consensus 112 v~TWNV~g~~p~~~l--~l~~wl~~~~p~DiyviG~QE~v 149 (621)
T PLN03191 112 IGTWNVAGRLPSEDL--EIEDWLSTEEPADIYIIGFQEVV 149 (621)
T ss_pred EEEeecCCCCCcccC--CHHHhccCCCCCCEEEEeeEEec
Confidence 689999997554332 37788776655 75 5679983
No 34
>PF09507 CDC27: DNA polymerase subunit Cdc27; InterPro: IPR019038 This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterised by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. ; GO: 0006260 DNA replication, 0005634 nucleus; PDB: 1U76_B 3E0J_B.
Probab=47.53 E-value=6.7 Score=43.13 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=7.7
Q ss_pred cccCccccccccccC
Q 007013 453 SQLGQLSLKSFFHKR 467 (621)
Q Consensus 453 ~~~~q~~l~~fF~~~ 467 (621)
...+|+||||||+++
T Consensus 416 ~k~kQ~simsFF~KK 430 (430)
T PF09507_consen 416 KKKKQGSIMSFFKKK 430 (430)
T ss_dssp ---EE--GGGTSB--
T ss_pred CCCCCcchhhhccCC
Confidence 456899999999863
No 35
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=38.72 E-value=26 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCCCCCccccceeecCCCCCCCceeeecCC
Q 007013 567 LCKGHKEPCVARVVKKPGPTFGRRFFVCAR 596 (621)
Q Consensus 567 ~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~ 596 (621)
.|+-||.+++.|+..+..+..-+.+|.|..
T Consensus 1 ~CP~Cg~~a~ir~S~~~s~~~~~~Y~qC~N 30 (47)
T PF04606_consen 1 RCPHCGSKARIRTSRQLSPLTRELYCQCTN 30 (47)
T ss_pred CcCCCCCeeEEEEchhhCcceEEEEEEECC
Confidence 377788999999999999999999999964
No 36
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=37.34 E-value=66 Score=34.07 Aligned_cols=47 Identities=15% Similarity=0.219 Sum_probs=27.9
Q ss_pred CcEEEEEEEcCCCCCchhHHH-------HHH-HHHHHHH-------c-CCcEEEEcccCCCCC
Q 007013 138 GHFILFNVYGPRADSEDTVRI-------QFK-LQFFHVL-------Q-GRRIFVVGDLNIAPA 184 (621)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR~-------~~k-~~fl~~L-------~-g~~VII~GDFN~~~~ 184 (621)
..|.|+|+|+=+......++. .++ ..+...| . ..++++.||||...+
T Consensus 80 t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 80 VVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 468999999877654322221 111 1122222 1 788999999998654
No 37
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=33.19 E-value=51 Score=28.82 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=32.2
Q ss_pred CCCCCCCCccccceeecCCCCCCCceeeecCC--CCCCCCCCCCCCCceeec
Q 007013 565 IPLCKGHKEPCVARVVKKPGPTFGRRFFVCAR--AEGPASNPEANCGYFKWA 614 (621)
Q Consensus 565 ~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~--~~g~~~~~~~~c~ff~W~ 614 (621)
+.-|. |+..-+..|. ..-...|..||.|+- ..| |..+|+|-.|-
T Consensus 20 ~ie~d-cnakvvvats-~dpvts~klyfscpyeisdg----~g~~~gfkrww 65 (122)
T PF05325_consen 20 PIECD-CNAKVVVATS-RDPVTSGKLYFSCPYEISDG----PGRGCGFKRWW 65 (122)
T ss_pred ceecc-CCceEEEEec-cCCcccceeeecCccccccC----CCCCccceeEE
Confidence 44788 8877666554 446678999999976 444 45789999984
No 38
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=20.77 E-value=91 Score=27.35 Aligned_cols=21 Identities=24% Similarity=0.804 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCchhHHHHHHHHHHHHHcCCcEEEEcccCC
Q 007013 141 ILFNVYGPRADSEDTVRIQFKLQFFHVLQGRRIFVVGDLNI 181 (621)
Q Consensus 141 ~LinVY~P~~~~~~~eR~~~k~~fl~~L~g~~VII~GDFN~ 181 (621)
+.+-+|+|++. .|-|+||||.
T Consensus 7 ~~FrvwAP~A~--------------------~V~l~GdFn~ 27 (99)
T cd02854 7 VTYREWAPNAE--------------------EVYLIGDFNN 27 (99)
T ss_pred EEEEEECCCCC--------------------EEEEEccCCC
Confidence 45779999875 4778899995
Done!