Query 007013
Match_columns 621
No_of_seqs 358 out of 2338
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 1.1E-40 3.8E-45 338.6 24.2 242 1-318 4-259 (265)
2 2j63_A AP-endonuclease; base e 100.0 4.7E-39 1.6E-43 354.3 22.6 266 1-316 150-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 8.2E-35 2.8E-39 292.3 23.7 239 1-315 2-256 (257)
4 1hd7_A DNA-(apurinic or apyrim 100.0 5.2E-35 1.8E-39 306.1 19.0 241 1-315 62-317 (318)
5 2jc5_A Exodeoxyribonuclease; h 100.0 1.1E-34 3.6E-39 291.0 20.4 242 1-317 2-257 (259)
6 2o3h_A DNA-(apurinic or apyrim 100.0 1.5E-34 5E-39 295.9 21.4 241 1-315 29-284 (285)
7 2jc4_A Exodeoxyribonuclease II 100.0 5.7E-34 1.9E-38 285.2 22.4 241 1-315 1-255 (256)
8 1vyb_A ORF2 contains A reverse 100.0 2.3E-33 7.8E-38 277.4 21.8 224 1-315 8-238 (238)
9 1ako_A Exonuclease III; AP-end 100.0 2.9E-33 9.8E-38 282.0 21.6 242 1-315 1-267 (268)
10 2ei9_A Non-LTR retrotransposon 100.0 2.7E-30 9.2E-35 261.0 16.7 208 1-318 8-221 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 100.0 6.6E-28 2.3E-32 241.9 20.1 221 1-316 20-243 (245)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.9 5E-27 1.7E-31 251.0 22.1 225 1-315 120-361 (362)
13 4fva_A 5'-tyrosyl-DNA phosphod 99.9 2.9E-25 1E-29 220.5 22.5 226 1-315 14-255 (256)
14 3teb_A Endonuclease/exonucleas 99.9 3.3E-24 1.1E-28 215.4 19.8 238 1-315 4-265 (266)
15 4f1h_A Tyrosyl-DNA phosphodies 99.9 9.4E-24 3.2E-28 206.3 21.0 233 1-315 4-249 (250)
16 4gz1_A Tyrosyl-DNA phosphodies 99.9 9.5E-24 3.3E-28 209.2 19.2 232 1-317 10-255 (256)
17 3l1w_A Uncharacterized protein 99.9 1.8E-22 6E-27 202.8 23.6 235 1-317 1-252 (257)
18 3g6s_A Putative endonuclease/e 99.9 3.6E-22 1.2E-26 202.0 20.6 241 1-318 4-262 (267)
19 1zwx_A SMCL, sphingomyelinase- 99.8 3.6E-20 1.2E-24 190.2 19.1 204 1-258 11-257 (301)
20 3mpr_A Putative endonuclease/e 99.8 1.9E-19 6.4E-24 186.0 21.5 208 1-257 7-236 (298)
21 2ddr_A Sphingomyelin phosphodi 99.8 3.5E-19 1.2E-23 183.1 19.7 211 1-258 10-262 (306)
22 3i41_A Beta-hemolysin; beta to 99.8 5.4E-18 1.8E-22 177.2 19.3 202 1-258 30-275 (317)
23 3ngq_A CCR4-NOT transcription 99.7 4.8E-16 1.7E-20 167.7 20.6 172 1-185 32-260 (398)
24 4b8c_D Glucose-repressible alc 99.6 6.6E-16 2.3E-20 179.0 3.6 81 1-81 395-495 (727)
25 2f1n_A CDT B, cytolethal diste 99.5 3.5E-14 1.2E-18 142.8 13.3 147 1-185 16-192 (262)
26 2a40_B Deoxyribonuclease-1; WA 99.5 5.3E-14 1.8E-18 142.2 14.2 156 1-184 1-174 (260)
27 1sr4_B CDT B, cytolethal diste 99.5 2.4E-13 8.2E-18 137.9 17.2 146 1-182 5-181 (261)
28 2imq_X Salivary nitrophorin; f 99.4 4.9E-12 1.7E-16 130.3 14.0 37 1-41 9-50 (282)
29 1i9z_A Synaptojanin, phosphati 99.3 7.5E-11 2.6E-15 125.0 23.0 142 1-182 27-211 (347)
30 2xsw_A 72 kDa inositol polypho 99.2 4.6E-10 1.6E-14 119.3 19.5 148 1-184 28-210 (357)
31 3mtc_A Type II inositol-1,4,5- 98.9 1.4E-07 4.7E-12 98.2 21.1 147 1-184 10-196 (313)
32 4a9c_A Phosphatidylinositol-3, 98.7 1.1E-06 3.9E-11 91.4 20.9 141 2-183 11-196 (316)
33 1hy9_A Cocaine and amphetamine 75.0 1.3 4.5E-05 31.1 1.7 35 564-612 3-37 (41)
34 2zvk_U DNA polymerase ETA, pro 28.1 13 0.00046 23.4 0.1 12 456-467 8-19 (26)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=1.1e-40 Score=338.57 Aligned_cols=242 Identities=35% Similarity=0.630 Sum_probs=195.2
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||++...++ .+.++|+.++|||||||||+.....+...+....||..|+... +++||+|||||+|
T Consensus 4 l~i~s~Nv~g~~~~~~~--~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~~-----~~~~~~Gvail~k 76 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRK--GFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPA-----ERKGYSGVAMYTK 76 (265)
T ss_dssp EEEEEEECSCHHHHHHH--THHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECB-----SSTTSCCEEEEES
T ss_pred cEEEEEEcCCchhhhhh--hHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEccC-----CCCCcCEEEEEEe
Confidence 69999999999987765 3999999999999999999988776654443468999887643 4467889999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.+ +..+..++. ....|.+||++.+++..+.|+|||+|+... ..+|..+
T Consensus 77 ~~----------~~~~~~~~~---------------------~~~~d~~gr~i~~~~~~~~i~~vy~p~~~~-~~~~~~~ 124 (265)
T 3g91_A 77 VP----------PSSLREGFG---------------------VERFDTEGRIQIADFDDFLLYNIYFPNGAM-SEERLKY 124 (265)
T ss_dssp SC----------CSEEECCCS---------------------CHHHHSBSCEEEEECSSCEEEEEECCCCTT-CHHHHHH
T ss_pred cC----------hHHhccCCC---------------------CcccCCcCCEEEEEeCCEEEEEEEecCCCC-CchhHHH
Confidence 73 333333331 023578999999999999999999999886 4567777
Q ss_pred HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226 (621)
Q Consensus 161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 226 (621)
+.+|++.|. +.++||+||||+.+.++|..+.. .+|...+ +.+|+.++ +.| |+|+||.+||..
T Consensus 125 r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~g--l~D~~r~~~p~~ 200 (265)
T 3g91_A 125 KLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE-RAWIDKFI-ENG--YVDTFRMFNSDP 200 (265)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHH-HHHHHHHH-HTT--EEETHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhccCHhhcCCCCccCHHH-HHHHHHHH-hcC--cEEeeHhhCCCC
Confidence 777766554 58999999999999988876542 4555544 78899988 665 999999999997
Q ss_pred CCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306 (621)
Q Consensus 227 ~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD 306 (621)
. .||||+.+.+++..|.|+||||||++..+.. .+.++.|.+. ..+||
T Consensus 201 ~-~yT~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~~~~~~i~~~-------------------~~~SD 247 (265)
T 3g91_A 201 G-QYTWWSYRTRARERNVGWRLDYFFVNEEFKG-------------KVKRSWILSD-------------------VMGSD 247 (265)
T ss_dssp C-CCSBCCSSTTTTTTTCCBCCEEEEEEGGGGG-------------GEEEEEECTT-------------------CCSSS
T ss_pred C-CCCCcCCCCCccccCceEEEEEEEECHHHHh-------------hhcEEEEeCC-------------------CCCCC
Confidence 6 6999999999998999999999999998754 6889999764 36899
Q ss_pred CcceEEEEeccC
Q 007013 307 HAPVYMCLGEVP 318 (621)
Q Consensus 307 H~PV~~~L~~~~ 318 (621)
|+||+++|....
T Consensus 248 H~Pv~~~~~~~~ 259 (265)
T 3g91_A 248 HCPIGLEIELLE 259 (265)
T ss_dssp BCCEEEEEECCC
T ss_pred cceEEEEhhhhh
Confidence 999999998544
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=4.7e-39 Score=354.27 Aligned_cols=266 Identities=27% Similarity=0.424 Sum_probs=188.0
Q ss_pred CeEEEeecccccccchhh-hHHHHHHhhcCCcEEEEeccchhhhchhHH--HHhhcCCeEEeecccCCCCCCCCceEEEE
Q 007013 1 MKIVTYNVNGLRQRVSQF-GSLRKLLDSFDADIICFQETKLRRQELKSD--LVMADGYESFFSCTRTSDKGRTGYSGVAT 77 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~-~~l~~~L~~l~aDIIcLQETk~t~~~l~~~--l~~~~GY~~~~s~~~~~~~gr~GysGVAI 77 (621)
|||+||||||++...++. ..|.++|+.++|||||||||+.....+... +....||+.||..+ .+++||+||||
T Consensus 150 LKI~TwNVnGl~~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~~~~~~~----~~~~g~~GVAI 225 (467)
T 2j63_A 150 YKFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPC----AFKRGYSGTRT 225 (467)
T ss_dssp EEEEEEECSCHHHHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECC----SSSTTSCCEEE
T ss_pred eEEEEEEcCCCcccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCceEEEecc----cCCCCcceEEE
Confidence 799999999998776542 359999999999999999999876655421 22257898777643 24578899999
Q ss_pred EEeecCCCCCccccccc--eeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----------CcEEEEEE
Q 007013 78 FCRVKSPFSSTEVALPV--AAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----------GHFILFNV 145 (621)
Q Consensus 78 l~K~~~~f~~~~~~~Pi--~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----------~~~~LinV 145 (621)
|+|.++. +.++ ....++.....+......+....+ ....|.+||+|.+++ ..|.|+|+
T Consensus 226 lsR~pi~------~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~----~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinv 295 (467)
T 2j63_A 226 YMKNSTT------VKGLHARCTRGFALPSEPQADAAAGSRVLV----EGAGDEEGRVLTTFLSPDPDSASSSSRIALVNT 295 (467)
T ss_dssp EEECCCC------CCTSCCEEEESSCCCCC-----------CC----CCCCCTTCCEEEEEECSSCCC----CCEEEEEE
T ss_pred EEeCCcc------ccccceeeeecccccccccccccccccccc----ccccCCCCcEEEEEEEeCCcccccCceEEEEEE
Confidence 9998531 0011 123344211000000000000000 023578999999887 67999999
Q ss_pred EcCCCCCchhHHHHHHH--------HHHHHHc--------------------CCcEEEEcccCCCCCccccCCC------
Q 007013 146 YGPRADSEDTVRIQFKL--------QFFHVLQ--------------------GRRIFVVGDLNIAPAAIDRCDA------ 191 (621)
Q Consensus 146 Y~P~~~~~~~eR~~~k~--------~fl~~L~--------------------g~~VII~GDFN~~~~~iD~~~~------ 191 (621)
|+|+.+.. .+|..+++ .++..+. +.+||||||||+++..+|.+++
T Consensus 296 YlP~~~~~-~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~ 374 (467)
T 2j63_A 296 YVANSGMG-LTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM 374 (467)
T ss_dssp ECCCCCTT-STTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH
T ss_pred ECCCCCcc-hHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc
Confidence 99997642 34444443 2233221 3799999999999998888651
Q ss_pred --CCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccc
Q 007013 192 --GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNF 269 (621)
Q Consensus 192 --~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~ 269 (621)
..+|...+ |.||..+|...| |+|+||.+||...+.||||+++.+++..|.|.||||||++..+..
T Consensus 375 ~~~~gf~~~e-r~~~~~lL~~~g--L~DafR~~~p~~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~---------- 441 (467)
T 2j63_A 375 QECSGFAPEE-RMSFRETMQRTN--SVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS---------- 441 (467)
T ss_dssp TTSTTSCHHH-HHHHHHHHHHTT--EEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG----------
T ss_pred ccccccCHHH-HHHHHHHHhhCC--CEEehHhhCCCCCCCccccCCCCCcccCCCCceeEEEEEcHHHHc----------
Confidence 24566655 889999987766 999999999986667999999999888899999999999987643
Q ss_pred cccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEEEec
Q 007013 270 VTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316 (621)
Q Consensus 270 ~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 316 (621)
.|.+|.|+.. ..+||||||+++|..
T Consensus 442 ---~v~~~~I~~~-------------------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 ---YVVDCFPMPT-------------------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp ---GEEEEEECTT-------------------CCSSSBCCEEEEEEC
T ss_pred ---ceeEEEECCC-------------------CCCCCcccEEEEEEc
Confidence 5889999764 468999999999974
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.2e-35 Score=292.28 Aligned_cols=239 Identities=30% Similarity=0.429 Sum_probs=173.1
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++.+.++ +.++|+.++|||||||||+.....+....+...||..++.. ..|+.|||||+|
T Consensus 2 lrv~t~Nv~g~~~~~~~---i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 71 (257)
T 2voa_A 2 LKIATFNVNSIRSRLHI---VIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-------SKGRNGVAIASL 71 (257)
T ss_dssp EEEEEEECSCGGGTHHH---HHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-------ETTEEEEEEEES
T ss_pred eEEEEEecCChHHHHHH---HHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-------CCCccEEEEEEc
Confidence 69999999999877653 99999999999999999987654443333445799877652 246789999999
Q ss_pred ecCCCCCccccccce-eeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHH
Q 007013 81 VKSPFSSTEVALPVA-AEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~-~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~ 159 (621)
.+ +. ...++.+ ...| ++|++.++++.|.|+|+|+|+......++..
T Consensus 72 ~~-----------~~~~~~~~~~---------------------~~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~~~~~~ 118 (257)
T 2voa_A 72 EE-----------PEDVSFGLDS---------------------EPKD-EDRLIRAKIAGIDVINTYVPQGFKIDSEKYQ 118 (257)
T ss_dssp SC-----------CEEEEESCSS---------------------SSCC-GGGEEEEEETTEEEEEEECCCCSCTTSHHHH
T ss_pred cC-----------hHHheecCCC---------------------Cccc-cCcEEEEEECCEEEEEEEeCCCCCCCcHHHH
Confidence 83 22 2222210 0134 7899888889999999999997642234444
Q ss_pred HHHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCC
Q 007013 160 FKLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225 (621)
Q Consensus 160 ~k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 225 (621)
++.+|++.|. +.++||+||||+.+..+|..... .++...+ +.+|..++ +.| |.|+||..+|.
T Consensus 119 ~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~p~ 194 (257)
T 2voa_A 119 YKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDA-RRAYKKIL-ELG--FVDVLRKIHPN 194 (257)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHH-HHHHHHHH-TTT--CEEHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhhccChhHhCCCCCCCHHH-HHHHHHHH-HcC--cEeeehhhCCC
Confidence 4444433322 68999999999998887765431 2344333 67788777 444 99999999998
Q ss_pred CCCCcccCCC-CCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCC
Q 007013 226 RREAYTCWPS-NTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 304 (621)
Q Consensus 226 ~~~~yT~ws~-~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~g 304 (621)
. +.||||+. +.+++..+.+.||||||+++.+.. .+.++.|....+. ...+
T Consensus 195 ~-~~~T~~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~ 245 (257)
T 2voa_A 195 E-RIYTFYDYRVKGAIERGLGWRGDAILATPPLAE-------------RCVDCYADIKPRL---------------AEKP 245 (257)
T ss_dssp C-CCCSBCCTTSTTTTTTTCCBCCEEEEECHHHHT-------------TEEEEEECCHHHH---------------SSSC
T ss_pred C-CCcceeccccCCceecCceEEEEEEEECHHHHh-------------hhheeEeehhhcc---------------CCCC
Confidence 6 46999999 777766678999999999987532 4778888653211 0268
Q ss_pred CCCcceEEEEe
Q 007013 305 SDHAPVYMCLG 315 (621)
Q Consensus 305 SDH~PV~~~L~ 315 (621)
|||+||+++|.
T Consensus 246 SDH~pv~~~l~ 256 (257)
T 2voa_A 246 SDHLPLVAVFD 256 (257)
T ss_dssp CSBCCEEEEEC
T ss_pred CCccCEEEEEe
Confidence 99999999985
No 4
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=100.00 E-value=5.2e-35 Score=306.10 Aligned_cols=241 Identities=29% Similarity=0.494 Sum_probs=169.1
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCC-eEEeecccCCCCCCCCceEEEEEE
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~~s~~~~~~~gr~GysGVAIl~ 79 (621)
|||+||||+|++...++ .|.++|..++|||||||||+.....+...+....|| +.|+... ....|+.|||||+
T Consensus 62 lrv~t~Nv~g~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 135 (318)
T 1hd7_A 62 LKICSWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 135 (318)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC---------CCCEEEEE
T ss_pred eEEEEEecCcchhhhhh--hHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEEEecC----CCCCccceEEEEE
Confidence 69999999999876554 399999999999999999987654443333446789 6666542 1345778999999
Q ss_pred eecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHH
Q 007013 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (621)
Q Consensus 80 K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~ 159 (621)
|.+ ++.+..++. ....|.+||++.+++..|.|+|+|+|+.... .++..
T Consensus 136 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~-~~~~~ 183 (318)
T 1hd7_A 136 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRG-LVRLE 183 (318)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSSSCEEEEECSSCEEEEEECCCCCGG-GTTHH
T ss_pred cCC----------ceeEEecCC---------------------CcccCCCCcEEEEEcCCEEEEEEEcCCCCCc-cccHH
Confidence 983 233333321 0124678999999999999999999987642 23333
Q ss_pred HHHHHHH----HHc----CCcEEEEcccCCCCCccccCC-----CCCCCCchHHHHHH-HHHHHHcCCceeeeecccCCC
Q 007013 160 FKLQFFH----VLQ----GRRIFVVGDLNIAPAAIDRCD-----AGPDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPE 225 (621)
Q Consensus 160 ~k~~fl~----~L~----g~~VII~GDFN~~~~~iD~~~-----~~~~f~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP~ 225 (621)
++.+|++ .+. ..++||+||||+.+..+|... ...+|...+ +.+| ..++.. | |+|+||..+|.
T Consensus 184 ~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~ll~~-~--l~D~~r~~~p~ 259 (318)
T 1hd7_A 184 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPN 259 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGGBSCHHHHTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhhccChhhcCCCCCcCHHH-HHHHHHHHhhC-C--CEEeehhhCCC
Confidence 3333333 222 479999999999998888543 224555444 6778 777754 4 99999999998
Q ss_pred CCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCC
Q 007013 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305 (621)
Q Consensus 226 ~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gS 305 (621)
..+.||||+.+.+++..+.+.||||||++..+.. .|.++.|... ..+|
T Consensus 260 ~~~~~T~~~~~~~~~~~~~~~rID~il~s~~~~~-------------~v~~~~v~~~-------------------~~~S 307 (318)
T 1hd7_A 260 TPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALGS 307 (318)
T ss_dssp CTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCSS
T ss_pred CCCCcceECCcCCCcccCCceEEEEEEECHHHHh-------------hhhheEeecc-------------------CCCC
Confidence 6556999999877666678999999999987643 5788888753 3579
Q ss_pred CCcceEEEEe
Q 007013 306 DHAPVYMCLG 315 (621)
Q Consensus 306 DH~PV~~~L~ 315 (621)
||+||+++|.
T Consensus 308 DH~Pv~~~l~ 317 (318)
T 1hd7_A 308 DHCPITLYLA 317 (318)
T ss_dssp SBCCEEEEEC
T ss_pred CccCEEEEec
Confidence 9999999985
No 5
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=100.00 E-value=1.1e-34 Score=290.99 Aligned_cols=242 Identities=30% Similarity=0.497 Sum_probs=178.7
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++...++ .|.++|+.++|||||||||+.....+...++...||..++... +..++.|||||+|
T Consensus 2 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~-----~~~~~~G~ailsr 74 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKK--GFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA-----EKRGYSGVAVYSK 74 (259)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC-----SSTTCCCEEEEES
T ss_pred cEEEEEeeccHHHHHHh--HHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc-----CCCCcceEEEEEe
Confidence 69999999999876554 3999999999999999999877655544344567898777642 3356679999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.++ .....++. . ...|.+||++.++++.+.|+|+|+|+... ..+|..+
T Consensus 75 ~~~----------~~~~~~~~---~------------------~~~~~~~r~~~~~~~~~~v~~~h~~~~~~-~~~r~~~ 122 (259)
T 2jc5_A 75 RKP----------DNVQIGMG---I------------------EEFDREGRFVRCDFGRLSVISLYLPSGSS-AEERQQV 122 (259)
T ss_dssp SCC----------SEEEESCS---C------------------HHHHTTCCEEEEEETTEEEEEEECCCCTT-CHHHHHH
T ss_pred cCc----------eeEEeCCC---C------------------CccCCCCeEEEEEcCCEEEEEEeccCCCC-CcHHHHH
Confidence 842 22222221 0 12356899999999999999999999875 3456555
Q ss_pred HHHHHHHHc---------CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226 (621)
Q Consensus 161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 226 (621)
+..|++.|. +.++||+||||..+...|..... .++...+ +.+|..++...| |.|+||..+|..
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~--l~d~~~~~~~~~ 199 (259)
T 2jc5_A 123 KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE-REWIGKVIHKLG--WTDMWRTLYPDV 199 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGBSCSTTCTTSTTSCHHH-HHHHHHHHHTTC--CEEHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHhccCC--cEEeeHhhCCCC
Confidence 444443332 68999999999998887765432 2344333 567888886665 999999999986
Q ss_pred CCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306 (621)
Q Consensus 227 ~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD 306 (621)
.+ ||||+.+.+.+..+.+.||||||+++.+.. .+.++.|... ..+||
T Consensus 200 ~~-~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~-------------------~~~SD 246 (259)
T 2jc5_A 200 PG-YTWWSNRGQAYAKDVGWRIDYQMVTPELAA-------------KAVSAHVYKD-------------------EKFSD 246 (259)
T ss_dssp CC-CCEESCSSHHHHTTCEECCEEEEECHHHHT-------------TEEEEEECCS-------------------SCCSS
T ss_pred CC-ccEECCcCCCccCCCeeEEEEEEECHHHHh-------------HHhheeecCC-------------------CCCCC
Confidence 66 999998876665677899999999976532 4788888743 37899
Q ss_pred CcceEEEEecc
Q 007013 307 HAPVYMCLGEV 317 (621)
Q Consensus 307 H~PV~~~L~~~ 317 (621)
|+||+++|...
T Consensus 247 H~pv~~~l~~~ 257 (259)
T 2jc5_A 247 HAPLVVEYDYA 257 (259)
T ss_dssp BCCEEEEESCC
T ss_pred cccEEEEEecc
Confidence 99999999753
No 6
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=1.5e-34 Score=295.92 Aligned_cols=241 Identities=29% Similarity=0.494 Sum_probs=174.8
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCC-eEEeecccCCCCCCCCceEEEEEE
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGY-ESFFSCTRTSDKGRTGYSGVATFC 79 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY-~~~~s~~~~~~~gr~GysGVAIl~ 79 (621)
|||+||||+|++...++ .|.++|+.++|||||||||+.....+...+....|| ..|+... ....|+.|||||+
T Consensus 29 l~v~t~Ni~~~~~~~~~--~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~~----~~~~g~~Gvails 102 (285)
T 2o3h_A 29 LKIASWNVDGLRAWIKK--KGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP----SDKEGYSGVGLLS 102 (285)
T ss_dssp EEEEEEECSSHHHHHHT--THHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECB----C--CCSCCEEEEE
T ss_pred eEEEEEecccChhhhhh--hHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEEEecc----cCCcccceEEEEE
Confidence 69999999999876554 399999999999999999987655443333446789 6666643 1345677999999
Q ss_pred eecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHH
Q 007013 80 RVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQ 159 (621)
Q Consensus 80 K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~ 159 (621)
|.+ ++.+..++. ....+.+||++.++++.|.|+|+|+|+.... .+|..
T Consensus 103 r~~----------~~~~~~~~~---------------------~~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~-~~~~~ 150 (285)
T 2o3h_A 103 RQC----------PLKVSYGIG---------------------DEEHDQEGRVIVAEFDSFVLVTAYVPNAGRG-LVRLE 150 (285)
T ss_dssp SSC----------CSEEEESCS---------------------CGGGSSBCCEEEEECSSCEEEEEECCCCCGG-GTTHH
T ss_pred ccC----------hHHeeeccC---------------------CcccCCCCcEEEEEeCCEEEEEEEcCCCCCc-chhHH
Confidence 983 233333321 0124678999989999999999999987642 23333
Q ss_pred HHHHHHH----HHc----CCcEEEEcccCCCCCccccCCCC-----CCCCchHHHHHH-HHHHHHcCCceeeeecccCCC
Q 007013 160 FKLQFFH----VLQ----GRRIFVVGDLNIAPAAIDRCDAG-----PDFAKNEFRIWF-RSMLVESGGSFFDVFRSKHPE 225 (621)
Q Consensus 160 ~k~~fl~----~L~----g~~VII~GDFN~~~~~iD~~~~~-----~~f~~~~~r~~l-~~lL~~~g~~L~D~~R~~hP~ 225 (621)
++.+|++ .+. ..++||+||||+.+..+|.+... .+|...+ +.+| ..++.. | |+|+||..+|.
T Consensus 151 ~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D~~~~~~~~~~~g~~~~~-~~~~~~~~l~~-~--l~D~~~~~~~~ 226 (285)
T 2o3h_A 151 YRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQE-RQGFGELLQAV-P--LADSFRHLYPN 226 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHH-HHHHHHHHHHT-T--CEEHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhhccChhhcCCCCCcCHHH-HHHHHHHHhcC-C--CEEEEEecCCC
Confidence 3333332 222 58999999999998888764322 3444433 6778 888764 5 99999999998
Q ss_pred CCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCC
Q 007013 226 RREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGS 305 (621)
Q Consensus 226 ~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gS 305 (621)
..+.||||+.+.+++..+.+.||||||++..+.. .|.++.|... ..+|
T Consensus 227 ~~~~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~S 274 (285)
T 2o3h_A 227 TPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP-------------ALCDSKIRSK-------------------ALGS 274 (285)
T ss_dssp CCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG-------------GEEEEEECTT-------------------CCSS
T ss_pred CCCcEeEecCcCCccccCceeEEEEEEECHHHHh-------------hhhheEeecc-------------------CCCC
Confidence 6556999999877666678899999999987633 4788888753 3589
Q ss_pred CCcceEEEEe
Q 007013 306 DHAPVYMCLG 315 (621)
Q Consensus 306 DH~PV~~~L~ 315 (621)
||+||+++|.
T Consensus 275 DH~pv~~~l~ 284 (285)
T 2o3h_A 275 DHCPITLYLA 284 (285)
T ss_dssp SBCCEEEEEC
T ss_pred CeecEEEEec
Confidence 9999999985
No 7
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=100.00 E-value=5.7e-34 Score=285.22 Aligned_cols=241 Identities=30% Similarity=0.476 Sum_probs=172.6
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++.+..+ |.++|+.++|||||||||+.....+...++...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~~---i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-------~~~~~G~ailsr 70 (256)
T 2jc4_A 1 MKITTWNVNSLNVRLPQ---VQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-------QKTYNGVAIVSR 70 (256)
T ss_dssp CEEEEEECSCHHHHHHH---HHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC-------CSSSCCEEEEES
T ss_pred CEEEEEEcCCcHHHHHH---HHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC-------CCcceEEEEEEC
Confidence 79999999999876553 99999999999999999987655443334445799877652 245679999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.++ .....++.+ ...+.++|++.++++.+.|+|+|+|+......++..+
T Consensus 71 ~~~----------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~ 119 (256)
T 2jc4_A 71 SVP----------QDVHFGLPA---------------------LPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKY 119 (256)
T ss_dssp SCC----------EEEEESCTT---------------------STTCCSCCEEEEEETTEEEEEEECCCCCSTTSHHHHH
T ss_pred CCh----------HHheecCCC---------------------CccCCcCcEEEEEeCCEEEEEEEecCCCCCCcHhHHH
Confidence 831 112222210 0135688999888899999999999976533334333
Q ss_pred HHHHHHHHc---------CCcEEEEcccCCCCCccccCCC-----CCCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013 161 KLQFFHVLQ---------GRRIFVVGDLNIAPAAIDRCDA-----GPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226 (621)
Q Consensus 161 k~~fl~~L~---------g~~VII~GDFN~~~~~iD~~~~-----~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 226 (621)
+..+++.|. +.++||+||||..+...|.... ..++...+ +.+++.++ ..| |+|+||..+|..
T Consensus 120 r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~--l~D~~~~~~~~~ 195 (256)
T 2jc4_A 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVE-RQWFQNLL-DLG--LTDSLRQVHPEG 195 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHH-HHHHHHHH-TTT--CEEHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhccChhHhCCCCCcCHHH-HHHHHHHH-hcC--cEEhhhhhCCCC
Confidence 333332221 7899999999998887775432 23444433 66788776 344 999999999985
Q ss_pred CCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013 227 REAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306 (621)
Q Consensus 227 ~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD 306 (621)
. .||||+.+.+.+..+.+.||||||+++.+.. .|.++.|....+. ...+||
T Consensus 196 ~-~~T~~~~~~~~~~~~~~~rID~i~~s~~~~~-------------~~~~~~v~~~~~~---------------~~~~SD 246 (256)
T 2jc4_A 196 A-FYTWFDYRGAMFQRKLGLRIDHILVSPAMAA-------------ALKDVRVDLETRA---------------LERPSD 246 (256)
T ss_dssp C-CCCBCCTTTTHHHHTCCBCCEEEEECHHHHT-------------TEEEEEECHHHHT---------------SSSCCS
T ss_pred C-ceeeEcCCCCccccCcEEEEEEEEECHHHHh-------------heeEEEEEhhccc---------------CCCCCC
Confidence 4 5999998877666677899999999986532 4788888764211 136899
Q ss_pred CcceEEEEe
Q 007013 307 HAPVYMCLG 315 (621)
Q Consensus 307 H~PV~~~L~ 315 (621)
|+||+++|.
T Consensus 247 H~pv~~~l~ 255 (256)
T 2jc4_A 247 HAPVTAEFD 255 (256)
T ss_dssp BCCEEEEEC
T ss_pred cccEEEEec
Confidence 999999985
No 8
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=2.3e-33 Score=277.37 Aligned_cols=224 Identities=25% Similarity=0.471 Sum_probs=164.3
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++...++ ..+.++|+.++|||||||||+.....+.. +...||..++... +..++.|||||+|
T Consensus 8 lri~t~Nv~g~~~~~~~-~~~~~~i~~~~~DIv~LQE~~~~~~~~~~--l~~~~y~~~~~~~-----~~~~~~Gvail~r 79 (238)
T 1vyb_A 8 ITILTLNINGLNSAIKR-HRLASWIKSQDPSVCCIQETHLTCRDTHR--LKIKGWRKIYQAN-----GKQKKAGVAILVS 79 (238)
T ss_dssp EEEEEEECSCCCSHHHH-HHHHHHHHHHCCSEEEEECCCCCTTSGGG--CCCTTCCEEEEEC-----CSSSSCCEEEEEC
T ss_pred ceEEEEecccCCchhhH-HHHHHHHHHcCCCEEEEecccCCCCCchh--HhhCCCCeEEEcc-----CCCCCceEEEEEe
Confidence 69999999999876543 24999999999999999999876554432 2346887644322 1234459999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEEcCCCCCchhH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSEDTV 156 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~~e 156 (621)
.++ |+.... ...|.++|++.+++ ..+.|+|+|+|+... +
T Consensus 80 ~~~---------~~~~~~-------------------------~~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~---~ 122 (238)
T 1vyb_A 80 DKT---------DFKPTK-------------------------IKRDKEGHYIMVKGSIQQEELTILNIYAPNTGA---P 122 (238)
T ss_dssp TTC---------CCEEEE-------------------------EEECTTSSEEEEEEEETTEEEEEEEEECCSSSH---H
T ss_pred CCC---------Cccccc-------------------------eeEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc---H
Confidence 843 222111 12356889887764 479999999998753 2
Q ss_pred HHHHHHHHHHHHc---CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCCcccC
Q 007013 157 RIQFKLQFFHVLQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCW 233 (621)
Q Consensus 157 R~~~k~~fl~~L~---g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~w 233 (621)
.+..++++.|. +.++||+||||..+..+|... .++.... +.+|..++.+.| |.|+||..+|...+ ||||
T Consensus 123 --~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~--l~d~~~~~~~~~~~-~T~~ 194 (238)
T 1vyb_A 123 --RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRST--RQKVNKD-TQELNSALHQAD--LIDIYRTLHPKSTE-YTFF 194 (238)
T ss_dssp --HHHHHHHHHTTTTCCTTEEEEEECSSCSSGGGBTT--CCCCCHH-HHHHHHHHHHTT--EEEHHHHHCTTCCC-CSEE
T ss_pred --HHHHHHHHHHHhccCCCEEEEccCCCCCCccccCC--CCCCcHH-HHHHHHHHhhCC--CEEhhHhhCCCCCc-eeEE
Confidence 34455666665 679999999999888777654 2344443 677888887776 99999999998654 9999
Q ss_pred CCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEE
Q 007013 234 PSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMC 313 (621)
Q Consensus 234 s~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~ 313 (621)
+.+.+. +.||||||+++.+.. .+.++.|... .+|||+||.++
T Consensus 195 ~~~~~~-----~~rID~i~~s~~~~~-------------~~~~~~v~~~--------------------~~SDH~pv~~~ 236 (238)
T 1vyb_A 195 SAPHHT-----YSKIDHIVGSKALLS-------------KCKRTEIITN--------------------YLSDHSAIKLE 236 (238)
T ss_dssp ETTTTE-----EECCEEEEEEGGGGG-------------GEEEEEEECC--------------------SSSSSCEEEEE
T ss_pred cCCCCc-----ccceEEEEeCHHHHh-------------hhhhceeecC--------------------CCCCcccEEEE
Confidence 876543 679999999987643 5778888753 78999999999
Q ss_pred Ee
Q 007013 314 LG 315 (621)
Q Consensus 314 L~ 315 (621)
|.
T Consensus 237 l~ 238 (238)
T 1vyb_A 237 LR 238 (238)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=100.00 E-value=2.9e-33 Score=281.99 Aligned_cols=242 Identities=29% Similarity=0.519 Sum_probs=169.9
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||+|++.+.. .|.++|..++|||||||||+.....+...++...||..++.. ..++.|||||+|
T Consensus 1 lrv~t~Nv~~~~~~~~---~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~-------~~~~~G~ailsr 70 (268)
T 1ako_A 1 MKFVSFNINGLRARPH---QLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHG-------QKGHYGVALLTK 70 (268)
T ss_dssp CEEEEEECSCGGGCHH---HHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEE-------ETTEEEEEEEES
T ss_pred CEEEEEehhHHHHHHH---HHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeC-------CCCcceEEEEEe
Confidence 7999999999987554 399999999999999999987655443334445799887653 245689999999
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----CcEEEEEEEcCCCCCch--
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH----GHFILFNVYGPRADSED-- 154 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~----~~~~LinVY~P~~~~~~-- 154 (621)
.+ ++....++.+. ..+.+++++.+++ +.|.|+|+|+|+.....
T Consensus 71 ~~----------~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~ 119 (268)
T 1ako_A 71 ET----------PIAVRRGFPGD---------------------DEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHP 119 (268)
T ss_dssp SC----------CSEEEESSTTC---------------------CHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCT
T ss_pred cC----------cceeeeCCCCc---------------------ccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccc
Confidence 83 22333222100 0123567776654 47999999999876421
Q ss_pred ---hHHHHHHHHHHHHHc-----CCcEEEEcccCCCCCccccCC-----------CCCCCCchHHHHHHHHHHHHcCCce
Q 007013 155 ---TVRIQFKLQFFHVLQ-----GRRIFVVGDLNIAPAAIDRCD-----------AGPDFAKNEFRIWFRSMLVESGGSF 215 (621)
Q Consensus 155 ---~eR~~~k~~fl~~L~-----g~~VII~GDFN~~~~~iD~~~-----------~~~~f~~~~~r~~l~~lL~~~g~~L 215 (621)
..|..+...+.+.+. +.++||+||||..+...|... ...+|.+.+ +.++..++ +.| |
T Consensus 120 ~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~l~-~~g--l 195 (268)
T 1ako_A 120 IKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEE-REWMDRLM-SWG--L 195 (268)
T ss_dssp THHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHH-HHHHHHHH-HTT--E
T ss_pred hhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcccChhhhccCCCcCcCHHH-HHHHHHHh-cCC--C
Confidence 123333333333332 689999999999988777642 223455443 66676665 454 9
Q ss_pred eeeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCC
Q 007013 216 FDVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWK 295 (621)
Q Consensus 216 ~D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~ 295 (621)
+|+||..+|...+.||||+.+.+.++.|.+.||||||+++.+.. .+.++.|....+.
T Consensus 196 ~D~~~~~~~~~~~~~T~~~~~~~~~~~~~~~riD~il~s~~~~~-------------~~~~~~i~~~~~~---------- 252 (268)
T 1ako_A 196 VDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAE-------------CCVETGIDYEIRS---------- 252 (268)
T ss_dssp EEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHT-------------TEEEEEECHHHHT----------
T ss_pred EEeEhhhCCCCCCCeeEeCCcCCccccCceEEEEEEEeCHHHHH-------------HHHhceechhhcC----------
Confidence 99999999987667999999887777778899999999987533 4667887654211
Q ss_pred CCCCCCCCCCCCcceEEEEe
Q 007013 296 GGMSTRLEGSDHAPVYMCLG 315 (621)
Q Consensus 296 ~~~~~~~~gSDH~PV~~~L~ 315 (621)
...+|||+||+++|.
T Consensus 253 -----~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 253 -----MEKPSDHAPVWATFR 267 (268)
T ss_dssp -----SSSCCSBCCEEEEEC
T ss_pred -----CCCCCCcccEEEEcc
Confidence 136899999999985
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=2.7e-30 Score=261.02 Aligned_cols=208 Identities=17% Similarity=0.159 Sum_probs=140.7
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||++.+..+ ++++|++++|||||||||+. ..||. + .. .++.||||+++
T Consensus 8 mki~s~Nvn~~r~~~~~---l~~~l~~~~~DIl~LQEt~~-----------~~gy~-~-~~--------~~~~gvail~~ 63 (240)
T 2ei9_A 8 LRIGQINLGGAEDATRE---LPSIARDLGLDIVLVQEQYS-----------MVGFL-A-QC--------GAHPKAGVYIR 63 (240)
T ss_dssp EEEEEEECTTCHHHHHT---HHHHHHHHTCSEEEEESCCT-----------TSSSE-E-CC--------SSSCSEEEEES
T ss_pred ceEEEEecCccHHHHHH---HHHHHHHcCCCEEEeecceE-----------cCCce-E-ec--------cCCCCEEEEEe
Confidence 69999999999987764 99999999999999999972 13786 3 21 12458999998
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeCcEEEEEEEcCCCCCchhHHHHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHGHFILFNVYGPRADSEDTVRIQF 160 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~~~~LinVY~P~~~~~~~eR~~~ 160 (621)
.+. .|+....++ .+.+++++.+++..++|+|+|+|+.... .+
T Consensus 64 ~~~--------~~~~~~~~~-------------------------~~~~~~~i~i~~~~i~i~svY~P~~~~~-----~~ 105 (240)
T 2ei9_A 64 NRV--------LPCAVLHHL-------------------------SSTHITVVHIGGWDLYMVSAYFQYSDPI-----DP 105 (240)
T ss_dssp STT--------SCEEECGGG-------------------------CCSSEEEEEETTTTEEEEEEECCTTSCS-----HH
T ss_pred cCC--------cceeeeccc-------------------------CCCCEEEEEEeeccEEEEEEEcCCCCch-----hH
Confidence 631 233221111 1345678888778999999999998652 34
Q ss_pred HHHHHHHHc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecc--cCCCCCCCcccCC
Q 007013 161 KLQFFHVLQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRS--KHPERREAYTCWP 234 (621)
Q Consensus 161 k~~fl~~L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~--~hP~~~~~yT~ws 234 (621)
+.+|++.|. +.++|||||||+++..++.......+...+ |.+....|. + ++|.+|. ++|... .||||+
T Consensus 106 ~~~~l~~l~~~~~~~~~Ii~GDfN~~~~~w~~~~~~~~~~~~~-r~~~~~~l~--~--~~d~~~l~~~~~~~~-~~T~~s 179 (240)
T 2ei9_A 106 YLHRLGNILDRLRGARVVICADTNAHSPLWHSLPRHYVGRGQE-VADRRAKME--D--FIGARRLVVHNADGH-LPTFST 179 (240)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEECCCCCGGGTCCHHHHSSSCHH-HHHHHHHHH--H--HHHHTTCEECCCTTC-CCSEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEecccccccccCCCCCCCCcchh-hHHHHHHHH--H--HHHhcCCEecCCCCC-CceEeC
Confidence 445554443 689999999999875432111001233322 334444442 2 8888884 477533 599998
Q ss_pred CCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEEE
Q 007013 235 SNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCL 314 (621)
Q Consensus 235 ~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L 314 (621)
.+. ++||||||+++.+. . .++.|.. ..+|||+||.++|
T Consensus 180 ~~~-------~~rID~~l~s~~l~--------------~-~~~~i~~--------------------~~~SDH~Pv~~~l 217 (240)
T 2ei9_A 180 ANG-------ESYVDVTLSTRGVR--------------V-SEWRVTN--------------------ESSSDHRLIVFGV 217 (240)
T ss_dssp TTE-------EECCEEEEECTTCC--------------E-EEEEECS--------------------CCSSSBCCEEEEE
T ss_pred CCC-------ceEEEEEEecCccc--------------c-CCeEECC--------------------CCCCCcccEEEEE
Confidence 642 68999999998753 1 4455542 2789999999999
Q ss_pred eccC
Q 007013 315 GEVP 318 (621)
Q Consensus 315 ~~~~ 318 (621)
....
T Consensus 218 ~~~~ 221 (240)
T 2ei9_A 218 GGGT 221 (240)
T ss_dssp EC--
T ss_pred CCCC
Confidence 8654
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.96 E-value=6.6e-28 Score=241.89 Aligned_cols=221 Identities=15% Similarity=0.113 Sum_probs=137.9
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEEEe
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATFCR 80 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl~K 80 (621)
|||+||||||++..... +.++|..++|||||||||+....... ....||..|+... ...++.|||||++
T Consensus 20 lri~s~Nv~~~~~~~~~---l~~~i~~~~~DIv~lQE~~~~~~~~~---~~~~gy~~~~~~~-----~~~~~~GvaIl~~ 88 (245)
T 1wdu_A 20 YRVLQANLQRKKLATAE---LAIEAATRKAAIALIQEPYVGGAKSM---KGFRGVRVFQSTA-----QGDGTVKAAIAVF 88 (245)
T ss_dssp EEEEEEECTTCHHHHHH---HHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCC-----CTTCCCCEEEEEC
T ss_pred eeeeeeeccccHHHHHH---HHHHHhhcCCCEEEEEcccccCCccc---cCCCcceEecccc-----ccCCCCCeEEEEE
Confidence 69999999999875543 99999999999999999997643322 1235787655321 2234679999997
Q ss_pred ecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEEE--eCcEEEEEEEcCCCCCchhHH
Q 007013 81 VKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD--HGHFILFNVYGPRADSEDTVR 157 (621)
Q Consensus 81 ~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~--~~~~~LinVY~P~~~~~~~eR 157 (621)
.+ ++.+.. +. ..+.++. ++.+. +..|.|+|+|+|+.... .+.
T Consensus 89 ~~----------~~~~~~-~~-----------------------~~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~~-~~~ 133 (245)
T 1wdu_A 89 DH----------DLDVIQ-YP-----------------------QLTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-ESY 133 (245)
T ss_dssp CS----------SCEEEE-CT-----------------------TTCCSSEEEEEEECSSCEEEEEEEECCTTSCS-HHH
T ss_pred CC----------CcceEE-ec-----------------------ccccCCEEEEEEEcCCCcEEEEEEEeCCCCCH-HHH
Confidence 52 222111 10 0122332 23333 34799999999987631 222
Q ss_pred HHHHHHHHHHHcCCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCCcccCCCCC
Q 007013 158 IQFKLQFFHVLQGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNT 237 (621)
Q Consensus 158 ~~~k~~fl~~L~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~ 237 (621)
.+....+++.+...++||+||||+.+..++... ... .+.+|.+++...+ | +..+|. +.||||+.+.
T Consensus 134 ~~~l~~~~~~~~~~~~Ii~GDfN~~~~~~~~~~-----~~~-~~~~l~~~~~~~~--l----~~~~~~--~~~T~~~~~~ 199 (245)
T 1wdu_A 134 LEQIKRVERKMGPKRLIFGGDANAKSTWWGSKE-----DDA-RGDQLMGTLGELG--L----HILNEG--DVPTFDTIRG 199 (245)
T ss_dssp HHHHHHHHHTTCSSSEEEEEECCCCCGGGTCSS-----CCH-HHHHHHHHHHHHT--C----EECCCS--CCCSEEC---
T ss_pred HHHHHHHHHHhCCCcEEEEeccccCcccCCCCC-----cCc-chHHHHHHHHHCC--c----EEecCC--CCCcEECCCC
Confidence 222222222222579999999999875443211 122 2556777777766 4 344552 3599999875
Q ss_pred CCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCCcceEEEEec
Q 007013 238 GAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDHAPVYMCLGE 316 (621)
Q Consensus 238 ~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH~PV~~~L~~ 316 (621)
+. +.++||||||++..+.. .|.++.|... ..+|||+||.++|..
T Consensus 200 ~~---~~~~rID~i~~s~~~~~-------------~v~~~~v~~~-------------------~~~SDH~Pv~~~l~l 243 (245)
T 1wdu_A 200 GK---RYQSRVDVTFCTEDMLD-------------LIDGWRVDED-------------------LVSSDHNGMVFNIRL 243 (245)
T ss_dssp -----CCEECCEEEEECGGGBT-------------TEEEEEECTT-------------------SSSSSBCCEEEEECC
T ss_pred CC---CCCCEEEEEEeChHHHh-------------hccceEEcCC-------------------CCCCCcccEEEEEEe
Confidence 42 34799999999987643 5778888642 378999999999974
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=5e-27 Score=251.02 Aligned_cols=225 Identities=16% Similarity=0.175 Sum_probs=139.6
Q ss_pred CeEEEeecccccc--cchhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEE
Q 007013 1 MKIVTYNVNGLRQ--RVSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (621)
Q Consensus 1 mkIvSwNInGlr~--~~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl 78 (621)
|||+||||+|+.. ...|...|.++|+.++||||||||+... .+..-.....+|..|+. +..+++|+|||
T Consensus 120 lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~--~~~~l~~~~~~y~~~~~-------~~~~~~G~aIl 190 (362)
T 4gew_A 120 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLAPIDKLQSLYKIYYS-------NKGCQYYTAIL 190 (362)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCHHHHGGGGTEEEEES-------STTSSSEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChh--HhHHHHHhcCCceEEeC-------CCCCCceEEEE
Confidence 7999999999954 2334456999999999999999998532 22211122345655543 23455699999
Q ss_pred EeecCCCCCccccccceeee-cccCcccccccccccCccccccccccccCCCCc-EEEE--Ee--CcEEEEEEEcCCCCC
Q 007013 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--DH--GHFILFNVYGPRADS 152 (621)
Q Consensus 79 ~K~~~~f~~~~~~~Pi~~ee-gltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv--~~--~~~~LinVY~P~~~~ 152 (621)
+|.+ +.... .+.... ....+| ++.+ .. ..|.|+|+|+++...
T Consensus 191 sk~~-----------i~~~~~~~~~~~---------------------~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~ 238 (362)
T 4gew_A 191 VSKM-----------FDVEKHDVIHFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTRE 238 (362)
T ss_dssp EETT-----------EEEEEEEEEECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGG
T ss_pred Eecc-----------CccccccccCCC---------------------CCcccceEEEEEEEECCEEEEEEEecCCcccc
Confidence 9973 22111 110000 011222 2222 22 469999999998765
Q ss_pred chhHHHHHHHHHH---HHHc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCC
Q 007013 153 EDTVRIQFKLQFF---HVLQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPE 225 (621)
Q Consensus 153 ~~~eR~~~k~~fl---~~L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~ 225 (621)
...+|..+..... ..+. +.+|||+||||..+...+.. .. +|.|+||..++.
T Consensus 239 ~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~~~~~--------------------~~--gl~Da~~~~~~~ 296 (362)
T 4gew_A 239 HRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSRV--------------------PD--GVKDAWEAAGSD 296 (362)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGGCCCC--------------------CT--TCEEHHHHTTCC
T ss_pred chhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcccchh--------------------cc--hHHHHHHHhCCC
Confidence 4445544433332 2222 78999999999765432210 02 399999999877
Q ss_pred CCCCcccCCCCCCCcccC--CcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCC
Q 007013 226 RREAYTCWPSNTGAEQFN--YGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303 (621)
Q Consensus 226 ~~~~yT~ws~~~~ar~~n--~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 303 (621)
....||||..+......+ .+.||||||+++.+ .+..+.+....+.. ....+
T Consensus 297 ~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l---------------~~~~~~vi~~~ri~------------~~~~~ 349 (362)
T 4gew_A 297 NKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRIR------------SCLCF 349 (362)
T ss_dssp GGGCCSEETTTCTTSCCSSCCEECCEEEEEESSC---------------CEEEEEEECCSCCT------------TTSSC
T ss_pred CCCCcCcccccCcccccCCCCCcceEEEEEcCCc---------------ceeEEEEEeeeecC------------CCCCC
Confidence 665699998876554433 35799999999875 33445544321100 01236
Q ss_pred CCCCcceEEEEe
Q 007013 304 GSDHAPVYMCLG 315 (621)
Q Consensus 304 gSDH~PV~~~L~ 315 (621)
.|||+||+++|.
T Consensus 350 pSDH~pV~A~FS 361 (362)
T 4gew_A 350 PSDHWAINATFF 361 (362)
T ss_dssp SCSSCEEEEEEE
T ss_pred CCcccCEEEEEc
Confidence 799999999995
No 13
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.94 E-value=2.9e-25 Score=220.50 Aligned_cols=226 Identities=15% Similarity=0.170 Sum_probs=135.5
Q ss_pred CeEEEeeccccccc--chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEE
Q 007013 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (621)
Q Consensus 1 mkIvSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl 78 (621)
|||+||||+|+... ..|...|.++|+.++||||||||+.-. .+. .+....+|..++.. +..+..|++|+
T Consensus 14 l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~--~~~-~l~~~~~~~~~~~~------~~~~~~g~~il 84 (256)
T 4fva_A 14 VSVMSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR--DLA-PIDKLQSLYKIYYS------NKGCQYYTAIL 84 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST--TCH-HHHGGGGTEEEEES------STTSSSEEEEE
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEecChh--HhH-HHHHhcCCceEeec------CCCCCcceEEE
Confidence 69999999998542 223346999999999999999998532 222 23333444444432 22345699999
Q ss_pred EeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEE--E--eCcEEEEEEEcCCCCCc
Q 007013 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVIT--D--HGHFILFNVYGPRADSE 153 (621)
Q Consensus 79 ~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv--~--~~~~~LinVY~P~~~~~ 153 (621)
++.++ ++.....+ .+. ....++ ++.+ . ...|.|+|+|++.....
T Consensus 85 ~~~~~---------~~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~ 133 (256)
T 4fva_A 85 VSKMF---------DVEKHDVI-HFQ---------------------NSGMYRTLQILEGSIGGLKVFLLNTHLESTREH 133 (256)
T ss_dssp EETTC---------EEEEEEEE-ECT---------------------TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG
T ss_pred Eeecc---------cceecccc-cCC---------------------CCcccceeEEEEEEeCCeEEEEEEecCCCCCcc
Confidence 98742 22111111 000 011122 2222 2 24699999999887654
Q ss_pred hhHHHHHHHHHHHH---Hc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCC
Q 007013 154 DTVRIQFKLQFFHV---LQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPER 226 (621)
Q Consensus 154 ~~eR~~~k~~fl~~---L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~ 226 (621)
..++..+....... +. +.++||+||||..+..... . .. +|.|+|+..++..
T Consensus 134 ~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~~-------~-------------~~--~~~d~~~~~~~~~ 191 (256)
T 4fva_A 134 RPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVSR-------V-------------PD--GVKDAWEAAGSDN 191 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCCC-------C-------------CT--TCEEHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhhh-------h-------------hc--chhhHHHHhCCCC
Confidence 44444433333222 22 7899999999975433211 0 02 3899999988776
Q ss_pred CCCcccCCCCCCCccc--CCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCC
Q 007013 227 REAYTCWPSNTGAEQF--NYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEG 304 (621)
Q Consensus 227 ~~~yT~ws~~~~ar~~--n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~g 304 (621)
...|||+......... ....||||||+++.+ .+..+.+....+.. ......
T Consensus 192 ~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~---------------~~~~~~~~~~~~~~------------~~~~~~ 244 (256)
T 4fva_A 192 KTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPL---------------DKVKFTLEGRQRIR------------SCLCFP 244 (256)
T ss_dssp GGCCSEETTTCCSSCSCCSCEECCEEEEEESSC---------------CEEEEEEECCSCCT------------TTCSCS
T ss_pred CCCcccccccCcccccCCCCCcCeEEEEEcCCc---------------eeeEEEEEeeEecC------------CCCCCc
Confidence 6569998776543322 245799999999875 34455544321100 011357
Q ss_pred CCCcceEEEEe
Q 007013 305 SDHAPVYMCLG 315 (621)
Q Consensus 305 SDH~PV~~~L~ 315 (621)
|||+||+++|.
T Consensus 245 SDH~pv~a~Fs 255 (256)
T 4fva_A 245 SDHWAINATFF 255 (256)
T ss_dssp CSSCEEEEEEE
T ss_pred CcccCEEEEEc
Confidence 99999999995
No 14
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.92 E-value=3.3e-24 Score=215.40 Aligned_cols=238 Identities=19% Similarity=0.192 Sum_probs=140.9
Q ss_pred CeEEEeecccccccch--hhhHHHHHHhhcCCcEEEEeccchhhh-----------c----hhHHHHhhc--CCeEEeec
Q 007013 1 MKIVTYNVNGLRQRVS--QFGSLRKLLDSFDADIICFQETKLRRQ-----------E----LKSDLVMAD--GYESFFSC 61 (621)
Q Consensus 1 mkIvSwNInGlr~~~~--r~~~l~~~L~~l~aDIIcLQETk~t~~-----------~----l~~~l~~~~--GY~~~~s~ 61 (621)
|||+||||++...... +...|.++|..++||||||||+..... . +...+.... +|..++..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~ 83 (266)
T 3teb_A 4 MKILTVNVHAWLEENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSN 83 (266)
T ss_dssp EEEEEEECCTTCSTTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEE
T ss_pred eEEEEEecccccCcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Confidence 6999999987643211 223588999999999999999964321 0 222222222 37665433
Q ss_pred ccCCCCCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEe----
Q 007013 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDH---- 137 (621)
Q Consensus 62 ~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~---- 137 (621)
... ....+..|+|||+|.+ +.....+ .+... +.. ...+ ..+++.+.+
T Consensus 84 ~~~--~~~~~~~g~ailsr~~-----------~~~~~~~-~~~~~--~~~------------~~~~-~r~~~~~~~~~~~ 134 (266)
T 3teb_A 84 SHI--GFGKYNEGVAVITRHK-----------IKAEDEF-YCTFA--QSV------------RTIS-ARRIVSITINYEG 134 (266)
T ss_dssp EEE--CSTTEEEEEEEEESSC-----------CSEEEEE-ECSSC--CCT------------TCTT-CCEEEEEEEEETT
T ss_pred ccc--CccccCCeEEEEECce-----------ecCceeE-EeCCC--CCC------------CCcc-cceEEEEEEEeCC
Confidence 211 1123346999998863 2111111 00000 000 0011 123333333
Q ss_pred CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc-CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCcee
Q 007013 138 GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ-GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFF 216 (621)
Q Consensus 138 ~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~-g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~ 216 (621)
..|.|+|+|.+........|..+...+++.+. +.++||+||||..+.. . ...++.++ .. +|.
T Consensus 135 ~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~~~~~il~GDfN~~~~~-----------~---~~~~~~l~-~~--~l~ 197 (266)
T 3teb_A 135 QDIEFYSCHMNLPNCETEDMGKNIQTILNRTQNSNLKILMGDFNTDAIG-----------N---VAAYENIL-SQ--GLF 197 (266)
T ss_dssp EEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCSCCEEEEEEECCCCTTT-----------C---HHHHHHHH-TT--TCE
T ss_pred eEEEEEEecCCCccCChHHHHHHHHHHHHHHhcCCcEEEEeECCCCCCC-----------C---CcHHHhhc-cc--ccc
Confidence 47999999998875433456665555555554 7899999999986521 0 12345444 23 399
Q ss_pred eeecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCC
Q 007013 217 DVFRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKG 296 (621)
Q Consensus 217 D~~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~ 296 (621)
|+|+..++...+ |||............+.||||||+++.+ .+..+.+.....
T Consensus 198 d~~~~~~~~~~~-~t~~~~~~~~~~~~~~~riD~i~~s~~~---------------~~~~~~v~~~~~------------ 249 (266)
T 3teb_A 198 DTYVMAEKKDDG-ITVDKSIHGWDNDKAKKRLDYIFSNKEL---------------KVKESKVIFNNK------------ 249 (266)
T ss_dssp EHHHHCSEECCC-CCEECC------CTTEECCEEEEESSCC---------------CEEEEEEESSSS------------
T ss_pred chHHhhccccCC-ccccCccCCcCcCCcCCeeEEEEeCCCe---------------EEEEEEEEeCCC------------
Confidence 999999988555 8884433322222457899999999865 467788776411
Q ss_pred CCCCCCCCCCCcceEEEEe
Q 007013 297 GMSTRLEGSDHAPVYMCLG 315 (621)
Q Consensus 297 ~~~~~~~gSDH~PV~~~L~ 315 (621)
.....|||+||+++|.
T Consensus 250 ---~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 250 ---NKEIVSDHFGIEVKIE 265 (266)
T ss_dssp ---SSCCCSSSCEEEEEEC
T ss_pred ---CCCCcCCccCEEEEEE
Confidence 1136799999999986
No 15
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.92 E-value=9.4e-24 Score=206.26 Aligned_cols=233 Identities=15% Similarity=0.166 Sum_probs=137.0
Q ss_pred CeEEEeeccccccc--chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEE
Q 007013 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (621)
Q Consensus 1 mkIvSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl 78 (621)
|||+||||+|+... ..|...|.++|+.++||||||||+... .+ ..+....++..++... ..++.|++++
T Consensus 4 l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~--~~-~~l~~~~~~~~~~~~~------~~~~~~~~~~ 74 (250)
T 4f1h_A 4 LSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPA--YV-QYLKKRAVSYLFFEGS------DDGYFTGIML 74 (250)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECHH--HH-HHHHHHCTTEEEEESC------SSSSEEEEEE
T ss_pred EEEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEeCCHH--HH-HHHHHhccCceeeccc------ccccCceeEE
Confidence 79999999998643 223345999999999999999999632 22 2233444555555432 2345577777
Q ss_pred EeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEE-EEE----eCcEEEEEEEcCCCCCc
Q 007013 79 CRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-ITD----HGHFILFNVYGPRADSE 153 (621)
Q Consensus 79 ~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv~----~~~~~LinVY~P~~~~~ 153 (621)
.+.+ .++.....+. + .....++.+ .+. ...+.++++|++.....
T Consensus 75 ~~~~---------~~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~ 123 (250)
T 4f1h_A 75 RKSR---------VKFLESEIIC-F---------------------PTTQMMRNLLIAQVTFSGQKLYLMTSHLESCKNQ 123 (250)
T ss_dssp ETTT---------CEEEEEEEEE-C---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG
T ss_pred eecc---------ccceeccccc-c---------------------cCccccceEEEEEEecCCcEEEEecccccccccc
Confidence 6653 1322111110 0 011223332 222 24689999999887655
Q ss_pred hhHHHHHHHHHHHHHc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCCC
Q 007013 154 DTVRIQFKLQFFHVLQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERREA 229 (621)
Q Consensus 154 ~~eR~~~k~~fl~~L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~~ 229 (621)
..+|..+...+++.|. ..+|||+||||+.+...+... . ....+.|.|+..++.....
T Consensus 124 ~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~ 184 (250)
T 4f1h_A 124 SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVG----------------G---LPAGVCDVWEQLGKQEHCR 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTTT----------------S---SCTTEEEHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhhh----------------h---ccccchHHHHHhcCCccCC
Confidence 5566666555665554 568999999997543322110 0 1124888888888876655
Q ss_pred cccCCCCCC--CcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCCC
Q 007013 230 YTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSDH 307 (621)
Q Consensus 230 yT~ws~~~~--ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSDH 307 (621)
+||+..... ....+.+.||||||+++..... . ..+....+....+. .....+|||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~--~--------~~~~~~~~~~~~~~-------------~~~~~~SDH 241 (250)
T 4f1h_A 185 YTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAP--P--------VTPDHMALIGMEKL-------------DCGRYTSDH 241 (250)
T ss_dssp CSEETTTCCSSCCSSCCEECCEEEEEECCTTSC--C--------CEEEEEEEECCSCC-------------TTSSCSCSB
T ss_pred cccccccCCCCCcCCCCCccEEEEEEeCccccc--c--------eeeeEEEEeccccc-------------CCCCCCCcc
Confidence 666554322 2233456899999999865321 0 02233333221110 012367999
Q ss_pred cceEEEEe
Q 007013 308 APVYMCLG 315 (621)
Q Consensus 308 ~PV~~~L~ 315 (621)
+||+++|+
T Consensus 242 ~pv~a~f~ 249 (250)
T 4f1h_A 242 WGIYCTFN 249 (250)
T ss_dssp CEEEEEEE
T ss_pred cCEEEEEe
Confidence 99999996
No 16
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.91 E-value=9.5e-24 Score=209.22 Aligned_cols=232 Identities=17% Similarity=0.146 Sum_probs=132.9
Q ss_pred CeEEEeeccccccc--chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceEEEEE
Q 007013 1 MKIVTYNVNGLRQR--VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSGVATF 78 (621)
Q Consensus 1 mkIvSwNInGlr~~--~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysGVAIl 78 (621)
|||+||||+|+... ..|...|.++|+.++||||||||+.- ..+. .+....++..++. . +..++ |.+++
T Consensus 10 l~v~swNi~g~~~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~~-~l~~~~~~~~~~~-~-----~~~~~-~~~~l 79 (256)
T 4gz1_A 10 ISFITWNIDGLDGCNLPERARGVCSCLALYSPDVVFLQEVIP--PYCA-YLKKRAASYTIIT-G-----NEEGY-FTAIL 79 (256)
T ss_dssp EEEEEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHHH-HHHHHCTTEEEEE-S-----CSSSS-EEEEE
T ss_pred EEEEEEEcCCCcCcCHHHHHHHHHHHHHHcCCCEEEEEcCCH--HHHH-HHHhhccccceee-c-----cccCC-ceEEE
Confidence 69999999998653 22334699999999999999999853 2221 2222223222322 1 23444 45555
Q ss_pred EeecCCCCCccccccceeee-cccCcccccccccccCccccccccccccCCCCc-EEEEE----eCcEEEEEEEcCCCCC
Q 007013 79 CRVKSPFSSTEVALPVAAEE-GFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD----HGHFILFNVYGPRADS 152 (621)
Q Consensus 79 ~K~~~~f~~~~~~~Pi~~ee-gltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~----~~~~~LinVY~P~~~~ 152 (621)
++.. ++.... ..... .....++ ++.+. ...+.|+|+|++....
T Consensus 80 ~~~~----------~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~ 128 (256)
T 4gz1_A 80 LKKG----------RVKFKSQEIIPF---------------------PNTKMMRNLLCVNVSLGGNEFCLMTSHLESTRE 128 (256)
T ss_dssp EETT----------TEEEEEEEEEEC---------------------TTCSSCCEEEEEEEEETTEEEEEEECBCCCSGG
T ss_pred EEec----------cccceecccccC---------------------CcccccceEEEEEEEeCCEEEEEEeeccccccc
Confidence 5542 221111 11000 0011222 22222 2469999999988765
Q ss_pred chhHHHHHHHHHHHHHc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccCCCCCC
Q 007013 153 EDTVRIQFKLQFFHVLQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKHPERRE 228 (621)
Q Consensus 153 ~~~eR~~~k~~fl~~L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~hP~~~~ 228 (621)
...+|..+...+++.|. +.+|||+||||..+...+. . .+ ...++.|.|+..++....
T Consensus 129 ~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~----------------~-~~--~~~~~~~~~~~~~~~~~~ 189 (256)
T 4gz1_A 129 HSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVIK----------------C-GG--LPDNVFDAWEFLGKPKHC 189 (256)
T ss_dssp GHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHHH----------------H-TC--SCTTEEEHHHHTTCCGGG
T ss_pred chhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhhh----------------h-hh--ccchhhhHHHHhcCCCCC
Confidence 45556665555555554 6799999999975332111 1 11 112488999988876655
Q ss_pred CcccCCCCCC--CcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCCCCC
Q 007013 229 AYTCWPSNTG--AEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLEGSD 306 (621)
Q Consensus 229 ~yT~ws~~~~--ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~gSD 306 (621)
.|||+..... ....+.+.||||||++..... + .+..+++....+. .....+||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~----~--------~~~~~~~~~~~~~-------------~~~~~~SD 244 (256)
T 4gz1_A 190 QYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGH----L--------IPQSLDLVGLEKL-------------DCGRFPSD 244 (256)
T ss_dssp SCSEETTTCCTTCCSSCCEECCEEEEEECC-CS----E--------EEEEEEEECCSCC-------------TTSSCSCS
T ss_pred CcccccCCCCccccCCCCCccEEEEEEECCccc----e--------eeeEEEEEecccc-------------CCCCCCCc
Confidence 5776554432 234456789999999876421 1 2334444332110 01246799
Q ss_pred CcceEEEEecc
Q 007013 307 HAPVYMCLGEV 317 (621)
Q Consensus 307 H~PV~~~L~~~ 317 (621)
|+||+++|++.
T Consensus 245 H~pv~a~~~iv 255 (256)
T 4gz1_A 245 HWGLLCTLNVV 255 (256)
T ss_dssp BCEEEEEEEEC
T ss_pred cccEEEEEEEE
Confidence 99999999863
No 17
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.90 E-value=1.8e-22 Score=202.84 Aligned_cols=235 Identities=18% Similarity=0.148 Sum_probs=139.5
Q ss_pred CeEEEeecccccccc------hhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhhcCCeEEeecccCCCCCCCCceE
Q 007013 1 MKIVTYNVNGLRQRV------SQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMADGYESFFSCTRTSDKGRTGYSG 74 (621)
Q Consensus 1 mkIvSwNInGlr~~~------~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~~GY~~~~s~~~~~~~gr~GysG 74 (621)
|||+||||++.+..- .+...|.++|..++||||||||+.... + ..+....||..+..... .+ .+..|
T Consensus 1 lrv~t~Ni~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~-~~l~~~l~y~~~~~~~~---~~-~~~~g 73 (257)
T 3l1w_A 1 MKIATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ--V-RDLKAYTTFTCLSAERE---GD-GQGEG 73 (257)
T ss_dssp CEEEEEECCCCCGGGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH--H-HHHHHHSSSEEEEEESS---SS-SCSCE
T ss_pred CEEEEEEeccCCCCccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHH--H-HHHHhcCCCcEEEeccc---CC-CCCce
Confidence 799999999887542 223358999999999999999997432 2 12333459976554321 12 23459
Q ss_pred EEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEE---EE----eCcEEEEEEEc
Q 007013 75 VATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVI---TD----HGHFILFNVYG 147 (621)
Q Consensus 75 VAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~ii---v~----~~~~~LinVY~ 147 (621)
+|||+|.. + .|+.....+ .+... |... +. ..-..+.|.++ ++ ...|.|+|+|.
T Consensus 74 ~ail~r~~-~-------~~~~~~~~~-~l~~~--~~~~-~~--------~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 74 LAILYNEQ-K-------VQAIDTGYF-WLSET--PQQP-SI--------HPEAGCPRIALWGLFKETTQNTPFLVINVHL 133 (257)
T ss_dssp EEEEECTT-T-------EEEEEEEEE-ESSSS--TTSS-CC--------CTTCSSCCEEEEEEEEETTCSSCEEEEEEEC
T ss_pred EEEEEEcc-e-------EEEEecCeE-ECcCC--CCcc-cc--------cccccccceeEEEEEEEcCCCCEEEEEEeCC
Confidence 99999852 0 122222111 01000 0000 00 00012345432 23 24699999999
Q ss_pred CCCCCchhHHHHHHHHHHHHH----cCCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeecccC
Q 007013 148 PRADSEDTVRIQFKLQFFHVL----QGRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSKH 223 (621)
Q Consensus 148 P~~~~~~~eR~~~k~~fl~~L----~g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~h 223 (621)
+..+. ..|..+...+.+.+ .+.++||+||||..+.. .. ++ +|.. +|.|+|+..+
T Consensus 134 ~~~~~--~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~------------~~----~~-~l~~---~l~d~~~~~~ 191 (257)
T 3l1w_A 134 DHISA--HARLAGMTVILEELHDKIAQYPTLLMGDFNAESGE------------EV----HQ-LVQK---KFQDSKNLAT 191 (257)
T ss_dssp CSSCH--HHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTS------------HH----HH-HHTT---TCEEGGGTSE
T ss_pred CCCCH--HHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCc------------HH----HH-Hhhh---hccchhhhhc
Confidence 87642 45555544444333 33499999999975432 11 22 3322 4999999988
Q ss_pred CCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCCC
Q 007013 224 PERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRLE 303 (621)
Q Consensus 224 P~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~~ 303 (621)
+... .+||..... .++.+.+.||||||+ ..+ .+.++.+..... ....
T Consensus 192 ~~~~-~~t~~~~~~-~~~~~~~~riD~i~~-~~~---------------~~~~~~v~~~~~---------------~~~~ 238 (257)
T 3l1w_A 192 HYGP-RGTFQNFTY-TKPWAELEEIDYIYV-KGW---------------QVQQTASLTDSI---------------DGRF 238 (257)
T ss_dssp EESC-SCCBCTTCT-TCCGGGCBCCEEEEE-ESE---------------EEEEEEECCCCB---------------TTBC
T ss_pred ccCC-CCcccCCcc-cCCCCCCCceeEEEE-CCc---------------EEEEEEEeccCc---------------CCcc
Confidence 7633 477755432 133445789999999 543 567777765311 1136
Q ss_pred CCCCcceEEEEecc
Q 007013 304 GSDHAPVYMCLGEV 317 (621)
Q Consensus 304 gSDH~PV~~~L~~~ 317 (621)
+|||+||+++|...
T Consensus 239 ~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 239 PSDHFPLEAEVAGE 252 (257)
T ss_dssp SSSBCCEEEEEEEC
T ss_pred cCCcceEEEEEEEE
Confidence 89999999999864
No 18
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.89 E-value=3.6e-22 Score=201.98 Aligned_cols=241 Identities=18% Similarity=0.194 Sum_probs=140.0
Q ss_pred CeEEEeeccccccc------chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHhh-cCCeEEeecccCCCCCCCCce
Q 007013 1 MKIVTYNVNGLRQR------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVMA-DGYESFFSCTRTSDKGRTGYS 73 (621)
Q Consensus 1 mkIvSwNInGlr~~------~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~~-~GY~~~~s~~~~~~~gr~Gys 73 (621)
|||+||||++.+.. ..+...|.++|..++||||||||+.... + ..+... .+|..+..... .+..+..
T Consensus 4 l~v~t~Ni~~~~~~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~--~-~~l~~~l~~y~~~~~~~~---~~~~~g~ 77 (267)
T 3g6s_A 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ--F-QDLRAGLPEYDGIGVGRD---DGKTAGE 77 (267)
T ss_dssp EEEEEEECCCCCGGGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH--H-HHHHHHCTTEEEECCCTT---TSSSSSC
T ss_pred EEEEEEEeccCCCCccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHH--H-HHHHHhccCCcEEEecCC---CCCcCCc
Confidence 69999999988641 1222459999999999999999998432 2 122222 67876553221 1222334
Q ss_pred EEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEE-EE--E----eCcEEEEEEE
Q 007013 74 GVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-IT--D----HGHFILFNVY 146 (621)
Q Consensus 74 GVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv--~----~~~~~LinVY 146 (621)
|+|||+|.. + .|+.....+ .+... |... +.. ..-..+.|.+ .+ . ...|.|+|+|
T Consensus 78 ~~ail~~~s-~-------~~~~~~~~~-~l~~~--~~~~-~~~-------~~~~~~~R~~~~~~~~~~~~~~~~~v~~~H 138 (267)
T 3g6s_A 78 YAPLFYRKD-K-------YEVLDSNTF-WLAEN--PDSV-GMM-------GWDAVCVRIATWAKFKDKATGKIFMAVNTH 138 (267)
T ss_dssp BCCEEEETT-T-------EEEEEEEEE-ESSSC--TTST-TCC-------CTTCSSCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred eeEEEEEcc-c-------eEEEecccE-ecCCC--CCcc-ccc-------cccccCcceEEEEEEEEcCCCCEEEEEEeC
Confidence 699998752 1 233222211 01000 0000 000 0001234432 22 2 2369999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHc----CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeeeeccc
Q 007013 147 GPRADSEDTVRIQFKLQFFHVLQ----GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDVFRSK 222 (621)
Q Consensus 147 ~P~~~~~~~eR~~~k~~fl~~L~----g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~~R~~ 222 (621)
.+... ...|..+...+.+.+. +.++||+||||..+.. . .++.+ ...+..|.|+|+..
T Consensus 139 l~~~~--~~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~~~------------~----~~~~l-~~~~~~l~d~~~~~ 199 (267)
T 3g6s_A 139 FDHVG--EEARRQSALLIIRKIKEIVGERPAVVTGDFNVTDAS------------D----AYETI-TTNEFVMKDAYKTA 199 (267)
T ss_dssp CCSSC--HHHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCTTS------------H----HHHHH-HSSSSCCEEHHHHC
T ss_pred CCCCC--HHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCCC------------H----HHHHh-hcCCcchhhhHhhh
Confidence 98765 2455555444444443 6899999999975432 1 13333 22211399999988
Q ss_pred CCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCCcccccccccccccccceeeeeeecccccCCCCCCCCCCCCCCCCC
Q 007013 223 HPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQKHDLQSHNFVTCHVNECDILIDYKRWKPGNAPRWKGGMSTRL 302 (621)
Q Consensus 223 hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~ll~~~~~l~~~~~~~~~V~~~~I~~~~~~~~~~~~~~w~~~~~~~~ 302 (621)
++.....|||....... .+.+.||||||+++.+ .+..+.+.... ...
T Consensus 200 ~~~~~~~~T~~~~~~~~--~~~~~riD~I~~s~~~---------------~~~~~~v~~~~---------------~~~- 246 (267)
T 3g6s_A 200 ARVTGVDYTFHDFARIP--AEDCEKIDFIFVTPQV---------------LVKSCEIPAEV---------------PEA- 246 (267)
T ss_dssp SEEEECSCSBCTTTTSC--GGGCCCCEEEEECTTS---------------EEEEEEECCCC---------------SSS-
T ss_pred ccccCCCCCEeCCCCCC--CCCCCcEeEEEeCCCc---------------eEEEEEEecCC---------------CCC-
Confidence 74323347887654321 2456899999999875 57788876531 002
Q ss_pred CCCCCcceEEEEeccC
Q 007013 303 EGSDHAPVYMCLGEVP 318 (621)
Q Consensus 303 ~gSDH~PV~~~L~~~~ 318 (621)
..|||+||.++|...+
T Consensus 247 ~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 247 LLSDHNPQLADLELEH 262 (267)
T ss_dssp CCCSBCCEEEEEEEC-
T ss_pred CCCCcccEEEEEEecc
Confidence 5799999999997543
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.84 E-value=3.6e-20 Score=190.24 Aligned_cols=204 Identities=15% Similarity=0.158 Sum_probs=107.6
Q ss_pred CeEEEeeccccccc-------chhhhHHHHHHhhcCCcEEEEeccchhh--hchhHHHHhhcCCeEEeecccCCC-----
Q 007013 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSD----- 66 (621)
Q Consensus 1 mkIvSwNInGlr~~-------~~r~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~~s~~~~~~----- 66 (621)
|||+||||++++.. ..+...+...|...+||||||||+.... ..+...+ ..+|...+.......
T Consensus 11 lrv~t~Ni~~~~~~~~~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 88 (301)
T 1zwx_A 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNL--REMYPHQTPVIGRSKHGWDK 88 (301)
T ss_dssp CEEEEEEEEECCTTTSTTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTTSCSTTCSE
T ss_pred eEEEEEECccCCccccCCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHH--hhcCCccccccCCccccccc
Confidence 79999999997432 1122235556678999999999997543 2222111 233432111110000
Q ss_pred ------CCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEEEe--
Q 007013 67 ------KGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH-- 137 (621)
Q Consensus 67 ------~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~~-- 137 (621)
....++.|||||+|. |+.....+ .+... .+.+ . .+.| ++.+.+
T Consensus 89 ~~g~~~~~~~~~~G~ailSr~-----------pi~~~~~~-~~~~~------~~~~--------~--~~~r~~~~~~~~~ 140 (301)
T 1zwx_A 89 TEGNYSNFALEDGGVAVVSQW-----------PIVEKSQH-IFQRG------GGAD--------R--LSNKGFAYVKIMK 140 (301)
T ss_dssp EEC-----CCBCCCCEEEESS-----------CEEEEEEE-ECSCC------CGGG--------G--GBCCEEEEEEEEE
T ss_pred cccccccccccCCCEEEEecC-----------CcccceEE-EecCC------CCcc--------c--ccCCCeEEEEEEE
Confidence 011244699999987 33322211 00000 0000 0 1122 333333
Q ss_pred --CcEEEEEEEcCCCCC------chhHHHHHHHHHHHHHc------CCcEEEEcccCCCCCccccCCCCCCCCchHHHHH
Q 007013 138 --GHFILFNVYGPRADS------EDTVRIQFKLQFFHVLQ------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIW 203 (621)
Q Consensus 138 --~~~~LinVY~P~~~~------~~~eR~~~k~~fl~~L~------g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~ 203 (621)
..|.|+|+|+++... ....|..+...+.+.+. +.++||+||||..+.. . .
T Consensus 141 ~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~------------~----~ 204 (301)
T 1zwx_A 141 NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGT------------D----E 204 (301)
T ss_dssp TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTS------------H----H
T ss_pred CCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeeCCCCCCc------------H----H
Confidence 469999999987642 12334444333333332 4799999999986543 1 2
Q ss_pred HHHHHHHcCCcee--eeecccCCCCCCCcccCCCCCC----CcccCCcceEEEEEEeCCCc
Q 007013 204 FRSMLVESGGSFF--DVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 258 (621)
Q Consensus 204 l~~lL~~~g~~L~--D~~R~~hP~~~~~yT~ws~~~~----ar~~n~gsRIDyIL~s~~ll 258 (621)
++.++...+ +. |+|+- . .|||.....+ .++.+.+.||||||+++...
T Consensus 205 ~~~l~~~~~--~~~~d~~~g-----~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~~~~~~ 257 (301)
T 1zwx_A 205 YHDMLKLLN--VSSPANFNG-----Q-MATWDPTTNSMLKESYPKAAPEYLDYIFVENGHA 257 (301)
T ss_dssp HHHHHHHHT--BCCCTTCCT-----T-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred HHHHHHHcC--CCCCccccC-----C-CceECCccCccccccCCCCCcceEeEEEEeCCCC
Confidence 455555554 55 78762 1 3777432110 11223478999999998753
No 20
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=1.9e-19 Score=185.98 Aligned_cols=208 Identities=18% Similarity=0.238 Sum_probs=114.1
Q ss_pred CeEEEeeccccccc--------chhhhHHHHHHhhcCCcEEEEeccchhhhchhHHHHh-hcCCeEEeecccCCCCCCCC
Q 007013 1 MKIVTYNVNGLRQR--------VSQFGSLRKLLDSFDADIICFQETKLRRQELKSDLVM-ADGYESFFSCTRTSDKGRTG 71 (621)
Q Consensus 1 mkIvSwNInGlr~~--------~~r~~~l~~~L~~l~aDIIcLQETk~t~~~l~~~l~~-~~GY~~~~s~~~~~~~gr~G 71 (621)
|||+||||+..+.. ..+...|.++|..++||||||||+... .+. .+.. ..+|..+.. .+. .+...
T Consensus 7 lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~--~~~-~l~~~l~~y~~~~~-~~~--~g~~~ 80 (298)
T 3mpr_A 7 LTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLH--QLK-DMKEALPGYDYIGV-GRD--DGKDK 80 (298)
T ss_dssp EEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHH--HHH-HHHHHSTTEEEECC-CTT--TSSSS
T ss_pred EEEEEEEeccCCCCCcccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHH--HHH-HHHHhCCCCcEEEE-ecC--CCCCC
Confidence 69999999765431 122235999999999999999999742 221 2222 346765433 211 12112
Q ss_pred ceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEE-EE--E----eCcEEEEE
Q 007013 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCV-IT--D----HGHFILFN 144 (621)
Q Consensus 72 ysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~i-iv--~----~~~~~Lin 144 (621)
..++|||+|.. + .|+.....+ .+... |... +.+ .-....|.+ .+ . ...|.|+|
T Consensus 81 g~~~aily~~s-r-------~~i~~~~~~-~l~~~--p~~~-~~~--------~~~~~~R~~~~~~~~~~~~g~~~~v~~ 140 (298)
T 3mpr_A 81 GEHSAIFYRTD-K-------FDIVEKGDF-WLSET--PDVP-SKG--------WDAVLPRICSWGHFKCKDTGFEFLFFN 140 (298)
T ss_dssp SCBCCEEEETT-T-------EEEEEEEEE-ESSSS--TTSS-CCC--------TTCSSCCEEEEEEEEETTTCCEEEEEE
T ss_pred CceeEEEEecC-c-------eEEEeccEE-EccCC--CCcc-Ccc--------cccccCceeEEEEEEEcCCCCEEEEEE
Confidence 23599997752 1 243322211 01000 0000 000 001123432 22 2 24699999
Q ss_pred EEcCCCCCchhHHHHHHHHHHHHHc------CCcEEEEcccCCCCCccccCCCCCCCCchHHHHHHHHHHHHcCCceeee
Q 007013 145 VYGPRADSEDTVRIQFKLQFFHVLQ------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRIWFRSMLVESGGSFFDV 218 (621)
Q Consensus 145 VY~P~~~~~~~eR~~~k~~fl~~L~------g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~~l~~lL~~~g~~L~D~ 218 (621)
+|.+..+ ...|..+...+.+.+. +.++||+||||..+.. . .++.+. .. +.|.|+
T Consensus 141 ~Hl~~~~--~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~~------------~----~~~~l~-~~-g~l~D~ 200 (298)
T 3mpr_A 141 LHMDHIG--KKARVESAFLVQEKMKELGRGKNLPAILTGDFNVDQTH------------Q----SYDAFV-SK-GVLCDS 200 (298)
T ss_dssp EECCSSC--HHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTS------------H----HHHHHH-TT-SSSEEH
T ss_pred ecCCCCC--HHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------H----HHHHHh-cC-Ccchhh
Confidence 9998654 2456555444444443 4799999999975432 1 234343 22 249999
Q ss_pred ecccCCCCCCCcccCCCCCCCcccCCcceEEEEEEeCCC
Q 007013 219 FRSKHPERREAYTCWPSNTGAEQFNYGTRIDHILCAGPC 257 (621)
Q Consensus 219 ~R~~hP~~~~~yT~ws~~~~ar~~n~gsRIDyIL~s~~l 257 (621)
|+..++.....+||...... ...+.||||||+++.+
T Consensus 201 ~~~~~~~~~~~~T~~~~~~~---~~~~~rID~Il~s~~~ 236 (298)
T 3mpr_A 201 YEKCDYRYALNGTFNNFDPN---SFTESRIDHIFVSPSF 236 (298)
T ss_dssp HHHCSEEECSSCSBCTTCTT---CCCSCCCEEEEECTTS
T ss_pred HhhhcccCCCCCCccCCCCC---CCCCceEEEEEeCCCe
Confidence 98876432223676544321 1246899999999875
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.82 E-value=3.5e-19 Score=183.10 Aligned_cols=211 Identities=15% Similarity=0.145 Sum_probs=108.1
Q ss_pred CeEEEeeccccccc-------chhhhHHHHHHhhcCCcEEEEeccchhhh--chhHHHHhhcCCeEEeecccC-------
Q 007013 1 MKIVTYNVNGLRQR-------VSQFGSLRKLLDSFDADIICFQETKLRRQ--ELKSDLVMADGYESFFSCTRT------- 64 (621)
Q Consensus 1 mkIvSwNInGlr~~-------~~r~~~l~~~L~~l~aDIIcLQETk~t~~--~l~~~l~~~~GY~~~~s~~~~------- 64 (621)
|||+||||++++.. ..+...+...+...+||||||||+..... .+...+ ..+|...+.....
T Consensus 10 lrv~t~Ni~~~~~~~~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~~~~ 87 (306)
T 2ddr_A 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNL--KKEYPNQTAVLGRSSGSEWD 87 (306)
T ss_dssp EEEEEEEEEECCTTTCTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHH--TTTCCEECCCTTSCCSTTSS
T ss_pred EEEEEEECccCcccccCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHH--hhhCCceeeccCcccccccc
Confidence 69999999998631 11222355567788999999999975431 221111 2333321110000
Q ss_pred -----CCCCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEEEe-
Q 007013 65 -----SDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITDH- 137 (621)
Q Consensus 65 -----~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~~- 137 (621)
......+..|+|||+|. |+.....+. ++. + .+.+ ..++| ++.+.+
T Consensus 88 ~~~~~~~~~~~~~~G~ailSr~-----------pi~~~~~~~-~~~---~---~~~~----------~~~~r~~~~~~i~ 139 (306)
T 2ddr_A 88 KTLGNYSSSTPEDGGVAIVSKW-----------PIAEKIQYV-FAK---G---CGPD----------NLSNKGFVYTKIK 139 (306)
T ss_dssp EEEESCCTTCSSCCCCEEEESS-----------CEEEEEEEE-CSC---C---C--------------CCCCEEEEEEEE
T ss_pred cccccccccCccCCeEEEEECC-----------CcccccEEE-cCC---C---CCcc----------hhcCCCeEEEEEE
Confidence 00112344699999987 433222110 000 0 0000 01334 333332
Q ss_pred ---CcEEEEEEEcCCCCC------chhHHHHHHHHHHHHHc------CCcEEEEcccCCCCCccccCCCCCCCCchHHHH
Q 007013 138 ---GHFILFNVYGPRADS------EDTVRIQFKLQFFHVLQ------GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEFRI 202 (621)
Q Consensus 138 ---~~~~LinVY~P~~~~------~~~eR~~~k~~fl~~L~------g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~r~ 202 (621)
..+.|+|+|+++... ....|..+...+.+.+. +.++||+||||..+...|... ...
T Consensus 140 ~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvil~GDfN~~~~~~d~~~------s~~--- 210 (306)
T 2ddr_A 140 KNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNN------DSE--- 210 (306)
T ss_dssp ETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCT------TSH---
T ss_pred eCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCcccccccC------CHH---
Confidence 369999999987632 22345444333333332 469999999999876554311 112
Q ss_pred HHHHHHHHcCCceeeeecccCCCCCCCcccCCCCCC----CcccCCcceEEEEEEeCCCc
Q 007013 203 WFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 258 (621)
Q Consensus 203 ~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~----ar~~n~gsRIDyIL~s~~ll 258 (621)
++.++...+ +.|. . +... .|||...... ..+.+.+.||||||+++.+.
T Consensus 211 -~~~l~~~~~--~~~~--~--~~g~-~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~ 262 (306)
T 2ddr_A 211 -YASMFKTLN--ASVP--S--YTGH-TATWDATTNSIAKYNFPDSPAEYLDYIIASKDHA 262 (306)
T ss_dssp -HHHHHHHHT--BCCC--E--EEEC-SCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSC
T ss_pred -HHHHHHhcC--CCCc--c--cCCC-CcccCCCCCccccccCCCCCcceeeEEEEeCCCC
Confidence 444555444 5542 1 1112 4887432110 11223478999999998753
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.77 E-value=5.4e-18 Score=177.23 Aligned_cols=202 Identities=18% Similarity=0.246 Sum_probs=108.1
Q ss_pred CeEEEeecccccc-------cchhhhHHHHHHhhcCCcEEEEeccchhh--hchhHHHHhhcCCeEEeecccCCCCCCCC
Q 007013 1 MKIVTYNVNGLRQ-------RVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCTRTSDKGRTG 71 (621)
Q Consensus 1 mkIvSwNInGlr~-------~~~r~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~~s~~~~~~~gr~G 71 (621)
|||+||||+++.. ...|...+..++...+||||||||+.... ..+...+ ...|...+.... .++.|
T Consensus 30 lrV~T~Ni~~~~~~~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L--~~~~py~~~~~g---~~~~~ 104 (317)
T 3i41_A 30 LKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNV--KKEYPYQTPVLG---RSQSG 104 (317)
T ss_dssp CCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHT--TTTCCEECCCTT---SCSTT
T ss_pred eEEEEEecccCccccCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHH--HHhCCcccccCC---ccccC
Confidence 7999999998742 12232335667778999999999996532 2222222 223432221110 11111
Q ss_pred -------c-------eEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcE-EEE-
Q 007013 72 -------Y-------SGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRC-VIT- 135 (621)
Q Consensus 72 -------y-------sGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~-iiv- 135 (621)
| .|++||+|. |+.....+. ++. . .+.+ ..+.|. +.+
T Consensus 105 ~~~~~~~y~~~~~~~~G~~ilSr~-----------Pi~~~~~~~-~~~---~---~~~d----------~~~~r~~~~~~ 156 (317)
T 3i41_A 105 WDKTEGSYSSTVAEDGGVAIVSKY-----------PIKEKIQHV-FKS---G---CGFD----------NDSNKGFVYTK 156 (317)
T ss_dssp CSEEEESCCSSCSBCCCCEEEESS-----------CEEEEEEEE-CSC---C---CSSG----------GGBCCEEEEEE
T ss_pred ccCcccccccccccCCccEEEeCC-----------CCccceeEE-CCC---C---CCcc----------cccCcceEEEE
Confidence 1 599999997 433222110 000 0 0000 012222 222
Q ss_pred -E--eCcEEEEEEEcCCCCCc------hhHHHHHHH---HHHHHHc---CCcEEEEcccCCCCCccccCCCCCCCCchHH
Q 007013 136 -D--HGHFILFNVYGPRADSE------DTVRIQFKL---QFFHVLQ---GRRIFVVGDLNIAPAAIDRCDAGPDFAKNEF 200 (621)
Q Consensus 136 -~--~~~~~LinVY~P~~~~~------~~eR~~~k~---~fl~~L~---g~~VII~GDFN~~~~~iD~~~~~~~f~~~~~ 200 (621)
+ ...|.|+|+|+++.... ...|..+.. ++++... +.+|||+||||..+.. .
T Consensus 157 i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~~~s------------~-- 222 (317)
T 3i41_A 157 IEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGT------------P-- 222 (317)
T ss_dssp EEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTS------------H--
T ss_pred EEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCeEEEEeECCCCCCC------------H--
Confidence 2 24689999999876421 234544433 3344331 6799999999986532 1
Q ss_pred HHHHHHHHHHcCCceeeeecccCCCCCCCcccCCCCCC----CcccCCcceEEEEEEeCCCc
Q 007013 201 RIWFRSMLVESGGSFFDVFRSKHPERREAYTCWPSNTG----AEQFNYGTRIDHILCAGPCL 258 (621)
Q Consensus 201 r~~l~~lL~~~g~~L~D~~R~~hP~~~~~yT~ws~~~~----ar~~n~gsRIDyIL~s~~ll 258 (621)
.++.++...+ +.|.-. ..+ .|||+..... .++.+...||||||++....
T Consensus 223 --~~~~l~~~l~--l~~~~~-~g~----~~t~d~~~n~~~~~~~p~~~~~rLDyIlvs~~~~ 275 (317)
T 3i41_A 223 --EFKDMLKNLN--VNDVLY-AGH----NSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHK 275 (317)
T ss_dssp --HHHHHHHHHT--BCCCEE-EEC----SCSBCTTTCHHHHHHCTTCCCBCCEEEEEBTTSC
T ss_pred --HHHHHHHhcC--CCCccc-CCC----CcccCCCCCccccccCCCCCCcceEEEEEeCCcC
Confidence 2444555454 666522 111 3777665331 23344567999999999864
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.70 E-value=4.8e-16 Score=167.69 Aligned_cols=172 Identities=20% Similarity=0.301 Sum_probs=93.1
Q ss_pred CeEEEeeccccc---------------ccchhhhHHHHHHhhcCCcEEEEeccchhh--hchhHHHHhhcCCeEEeecc-
Q 007013 1 MKIVTYNVNGLR---------------QRVSQFGSLRKLLDSFDADIICFQETKLRR--QELKSDLVMADGYESFFSCT- 62 (621)
Q Consensus 1 mkIvSwNInGlr---------------~~~~r~~~l~~~L~~l~aDIIcLQETk~t~--~~l~~~l~~~~GY~~~~s~~- 62 (621)
+||+||||..-. ....|+..|.++|..++||||||||++... +.+ ...+...||..+|...
T Consensus 32 ~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~~~l-~~~L~~~gY~~v~~~k~ 110 (398)
T 3ngq_A 32 FTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLF-LPALKERGYDGFFSPKS 110 (398)
T ss_dssp EEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTH-HHHHHHTTEEEEEEESC
T ss_pred EEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHHHHHH-HHHHHhCCceEEEecCC
Confidence 589999997421 011123458999999999999999998643 233 2344567998877532
Q ss_pred cCC---CCCCCCceEEEEEEeecCCCCCccccccceeeecccCccccccccc-ccCccccccccccccCCCCcEEEEEe-
Q 007013 63 RTS---DKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKI-MEGLEDFSKDELLKIDSEGRCVITDH- 137 (621)
Q Consensus 63 ~~~---~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~-~~~~~~~~~~~~~~~D~eGR~iiv~~- 137 (621)
+.. ..+++++.|||||+|.. +|... +.+...+... +.. ..+.+.. -......|.-|-++.+++
T Consensus 111 r~~~~~~~~~~~~eG~AIfyr~~-~f~ll--------~~~~i~ls~~--~~~~s~~~~~~-~~Ri~t~~nval~~~L~~~ 178 (398)
T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTE-KFTLV--------QKHTVEFNQV--AMANSDGSEAM-LNRVMTKDNIGVAVVLEVH 178 (398)
T ss_dssp TTSCCCHHHHHTCEEEEEEEETT-TEEEE--------EEEEEEHHHH--HHHTCTTCHHH-HHTTTTCCCEEEEEEEEEC
T ss_pred CccccccccccCcceeEEEEECC-cceEE--------eeeEEecCCC--cccccccchhh-hcceeeccceeEEEEEEEc
Confidence 100 00124568999999973 33221 1111111100 000 0010000 000111233333333443
Q ss_pred ----------------CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc------------------CCcEEEEcccCCCC
Q 007013 138 ----------------GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ------------------GRRIFVVGDLNIAP 183 (621)
Q Consensus 138 ----------------~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~------------------g~~VII~GDFN~~~ 183 (621)
..|.|+|+|+-........|+.+...+++.|. ..+||||||||..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P 258 (398)
T 3ngq_A 179 KELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258 (398)
T ss_dssp GGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCT
T ss_pred ccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCC
Confidence 23899999997754444566655444444332 25899999999987
Q ss_pred Cc
Q 007013 184 AA 185 (621)
Q Consensus 184 ~~ 185 (621)
..
T Consensus 259 ~s 260 (398)
T 3ngq_A 259 DS 260 (398)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=6.6e-16 Score=179.04 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=34.3
Q ss_pred CeEEEeeccc--c-cc------------cchhhhHHHHHHhhcCCcEEEEeccchhh-hchhHHHHhhcCCeEEeecccC
Q 007013 1 MKIVTYNVNG--L-RQ------------RVSQFGSLRKLLDSFDADIICFQETKLRR-QELKSDLVMADGYESFFSCTRT 64 (621)
Q Consensus 1 mkIvSwNInG--l-r~------------~~~r~~~l~~~L~~l~aDIIcLQETk~t~-~~l~~~l~~~~GY~~~~s~~~~ 64 (621)
+++++|||.. + .. ...|+..|.+.|..++||||||||+.... ..+....+...||..++.....
T Consensus 395 ~~~ls~Nil~~~~~~~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~~~~~ 474 (727)
T 4b8c_D 395 FTVLSYNTLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFHAKAR 474 (727)
T ss_dssp -------CCCGGGCCTTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-----
T ss_pred eeeeeccccccccCccccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEeccCC
Confidence 4688999974 1 11 11122358899999999999999997532 1222223445688877642210
Q ss_pred C----CCCCCCceEEEEEEee
Q 007013 65 S----DKGRTGYSGVATFCRV 81 (621)
Q Consensus 65 ~----~~gr~GysGVAIl~K~ 81 (621)
. ..+.+++.|||||+|.
T Consensus 475 ~~~~~~~~~~~~~G~AI~y~~ 495 (727)
T 4b8c_D 475 AKTMHSKDSKKVDGCCIFFKR 495 (727)
T ss_dssp -----------CCCCEEEC--
T ss_pred cccccccCCCCcccEEEEEEc
Confidence 0 0122345799999876
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.54 E-value=3.5e-14 Score=142.77 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=84.9
Q ss_pred CeEEEeecccccccchh--hhHHHHHHhhcC-CcEEEEeccchh--------h----hchh-HHHHhhcC------CeEE
Q 007013 1 MKIVTYNVNGLRQRVSQ--FGSLRKLLDSFD-ADIICFQETKLR--------R----QELK-SDLVMADG------YESF 58 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r--~~~l~~~L~~l~-aDIIcLQETk~t--------~----~~l~-~~l~~~~G------Y~~~ 58 (621)
+||+|||++|-...... .-.|.++|...+ +|||+|||+-.- + .... .+++...| +.++
T Consensus 16 ~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v~E~~w~lGt~srp~~~yi 95 (262)
T 2f1n_A 16 FRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYI 95 (262)
T ss_dssp CCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCEEEE
T ss_pred eEEEEEEcCCCCCCCcccccccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCHHHHHHHhCCCCCCceEEE
Confidence 58999999996542221 124888999988 999999998622 1 0000 11222233 5443
Q ss_pred eecccCCCCCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEEeC
Q 007013 59 FSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITDHG 138 (621)
Q Consensus 59 ~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~~~ 138 (621)
|..... -..++.|+||++|.+ +. +.+. |+. .. ......+-++.+
T Consensus 96 Y~~~~D---~~~~r~nlAIlSr~~-----------ad--ev~v-Lp~------------------~~-~~~Rp~lgiri~ 139 (262)
T 2f1n_A 96 YFSAVD---ALGGRVNLALVSNRR-----------AD--EVFV-LSP------------------VR-QGGRPLLGIRIG 139 (262)
T ss_dssp EEECSC---SSSCSSCEEEEESSC-----------CS--EEEE-ECC------------------SS-TTCCCEEEEEET
T ss_pred EEeecc---CCCCceeeEEEEccc-----------cc--ceEE-CCC------------------CC-CCCCceEEEEEC
Confidence 332211 124567999999974 22 1110 110 00 113345557788
Q ss_pred cEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---C-----CcEEEEcccCCCCCc
Q 007013 139 HFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---G-----RRIFVVGDLNIAPAA 185 (621)
Q Consensus 139 ~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---g-----~~VII~GDFN~~~~~ 185 (621)
.++++++|+-..+. .++........+.+. . .+|||+||||..++.
T Consensus 140 ~~~ff~tHa~a~~g--~da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFNr~P~s 192 (262)
T 2f1n_A 140 NDAFFTAHAIAMRN--NDAPALVEEVYNFFRDSRDPVHQALNWMILGDFNREPAD 192 (262)
T ss_dssp TEEEEEEECCSSSS--CSHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHH
T ss_pred CEEEEEEEecCCCC--ccHHHHHHHHHHHHhcCcccccCCCcEEEEecCCCCCcc
Confidence 89999999976643 233333333333343 3 599999999986654
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.53 E-value=5.3e-14 Score=142.18 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred CeEEEeecccccccchhhhHHHHHHhhc--CCcEEEEeccchhh----hchhHHHHh--hcCCeEEeecccCCCCCCC-C
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDSF--DADIICFQETKLRR----QELKSDLVM--ADGYESFFSCTRTSDKGRT-G 71 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~l--~aDIIcLQETk~t~----~~l~~~l~~--~~GY~~~~s~~~~~~~gr~-G 71 (621)
|||+||||+.+.....+...+.+.|... +||||||||+.-.. ..+...+.. ..+|..+.... .+.. +
T Consensus 1 lrv~s~NI~~~g~~~~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~~v~~~~----~~~~~~ 76 (260)
T 2a40_B 1 LKIAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSEP----LGRNSY 76 (260)
T ss_dssp CEEEEEEEEEESHHHHHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECCC----BCSSSC
T ss_pred CEEEEEehhhhCCCccchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcEEEEccc----CCCCCC
Confidence 7999999986532111111244444443 89999999996431 112111111 13476655432 1221 2
Q ss_pred ceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCcEEEEE-----eCcEEEEEEE
Q 007013 72 YSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGRCVITD-----HGHFILFNVY 146 (621)
Q Consensus 72 ysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR~iiv~-----~~~~~LinVY 146 (621)
.-++++++|.+ .+....... +... +.. .+- .....+-+.+... ...|+|+++|
T Consensus 77 ~~~~~~ly~~~----------~v~~~~~~~-~~~~--~~~-~~~--------~~~~R~p~~~~~~~~~~~g~~~~vi~~H 134 (260)
T 2a40_B 77 KERYLFLFRPN----------KVSVLDTYQ-YDDG--CES-CGN--------DSFSREPAVVKFSSHSTKVKEFAIVALH 134 (260)
T ss_dssp CBEEEEEECTT----------TCEEEEEEE-CCTT--STT-THH--------HHCSSCCEEEEEECTTSSSSEEEEEECC
T ss_pred cEEEEEEEcCc----------eeEecCcee-ccCC--CcC-CCC--------CceeeCCEEEEEEeCCCCCceEEEEEec
Confidence 23689999873 122222110 1000 000 000 0111222333333 2469999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHc----CCcEEEEcccCCCCC
Q 007013 147 GPRADSEDTVRIQFKLQFFHVLQ----GRRIFVVGDLNIAPA 184 (621)
Q Consensus 147 ~P~~~~~~~eR~~~k~~fl~~L~----g~~VII~GDFN~~~~ 184 (621)
.+.... ..+.+....++..+. ..++||+||||..+.
T Consensus 135 l~~~~~--~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 135 SAPSDA--VAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp CCGGGH--HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred CCCCCc--HHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 986532 233444444544432 579999999997544
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.51 E-value=2.4e-13 Score=137.85 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=78.8
Q ss_pred CeEEEeecccccccc-hhhh-HHHHHHhh-cCCcEEEEeccchhhh-chh-HHH-----------Hhh------cCCeE-
Q 007013 1 MKIVTYNVNGLRQRV-SQFG-SLRKLLDS-FDADIICFQETKLRRQ-ELK-SDL-----------VMA------DGYES- 57 (621)
Q Consensus 1 mkIvSwNInGlr~~~-~r~~-~l~~~L~~-l~aDIIcLQETk~t~~-~l~-~~l-----------~~~------~GY~~- 57 (621)
+||+||||+|-...- .++. .+.++|.. .++|||+|||+..-.. ... ..+ ... .++.+
T Consensus 5 ~kv~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~e~~w~lg~~~r~~~~yi 84 (261)
T 1sr4_B 5 FKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYI 84 (261)
T ss_dssp SCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCEEEE
T ss_pred cEEEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchhhhhhhcccccCCCceEE
Confidence 689999999843312 1222 48999999 8899999999864221 110 000 000 12222
Q ss_pred EeecccCCCCCCCCceEEEEEEeecCCCCCccccccceeeecccCcccccccccccCccccccccccccCCCCc-EEEEE
Q 007013 58 FFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAEEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-CVITD 136 (621)
Q Consensus 58 ~~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~iiv~ 136 (621)
||... ....|..|+||++|..+ ....-+. . ...+.+.| ++.++
T Consensus 85 y~~~~----d~~~g~~g~AIlSR~~~-----------~~v~~l~---~------------------~~~~~~~R~~l~i~ 128 (261)
T 1sr4_B 85 YYSRL----DVGANRVNLAIVSRRQA-----------DEAFIVH---S------------------DSSVLQSRPAVGIR 128 (261)
T ss_dssp EEECC----CTTTSCSCEEEEESSCC-----------SEEEEEC---C------------------CCCSSCCCCEEEEE
T ss_pred EEEee----cCCCCccceEEEEccch-----------hceEEcC---C------------------CCCCCcCcceEEEE
Confidence 33221 11235569999999732 1110000 0 00012333 44566
Q ss_pred eCcEEEEEEEcCCCC-CchhHHHHHHHHHHHHH---cC---CcEEEEcccCCC
Q 007013 137 HGHFILFNVYGPRAD-SEDTVRIQFKLQFFHVL---QG---RRIFVVGDLNIA 182 (621)
Q Consensus 137 ~~~~~LinVY~P~~~-~~~~eR~~~k~~fl~~L---~g---~~VII~GDFN~~ 182 (621)
.+.+.++++|+...+ .+..........++... .. .++||+||||..
T Consensus 129 i~g~~f~s~Hl~~~~~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 129 IGTDVFFTVHALATGGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRA 181 (261)
T ss_dssp ETTEEEEEEECCTTTTTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSC
T ss_pred ECCeEEEEeCCCCCCCchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCC
Confidence 667999999997765 32222233333333332 23 699999999964
No 28
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.35 E-value=4.9e-12 Score=130.35 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=26.2
Q ss_pred CeEEEeecccccccchhhhHHHHHHh---hcCCcE--EEEeccchh
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLD---SFDADI--ICFQETKLR 41 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~---~l~aDI--IcLQETk~t 41 (621)
|+|+||||++..... .+.+++. ...||| |||||+...
T Consensus 9 i~V~T~Nv~~~~~~~----~l~~wl~~~~~~~pDI~viglQEv~~~ 50 (282)
T 2imq_X 9 VHTVSWNSGHERAPT----NLEELLGLNSGETPDVIAVAVQGFGFQ 50 (282)
T ss_dssp EEEEEEEEETCCCCS----CCHHHHTCTTSCCCSEEEEEEEESCTT
T ss_pred EEEEEEeCCCCcCch----hHHHHhcccccCCCCEEEEEeeeeccc
Confidence 589999998764321 1455554 689996 599998754
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.35 E-value=7.5e-11 Score=124.99 Aligned_cols=142 Identities=22% Similarity=0.242 Sum_probs=79.5
Q ss_pred CeEEEeecccccccchhhhHHHHHHhh---cCCcE--EEEecc-chhhhc---------------hhHHHHh----hcCC
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS---FDADI--ICFQET-KLRRQE---------------LKSDLVM----ADGY 55 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~---l~aDI--IcLQET-k~t~~~---------------l~~~l~~----~~GY 55 (621)
+.|+||||+|.... . .|..+|.. ..||| |||||. .+.... +...+.. ...|
T Consensus 27 i~v~TwNv~g~~~~-~---~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y 102 (347)
T 1i9z_A 27 IFVASYNLNGCSAT-T---KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGY 102 (347)
T ss_dssp EEEEEEECTTCCCC-S---CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCE
T ss_pred EEEEeEecCCCCCc-h---hHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCce
Confidence 47899999997642 1 28888874 68999 899997 333221 1111111 1344
Q ss_pred eEEeecccCCCCCCCCceEEEEEEeecCCCCCccccccc-eee-----ecccCcccccccccccCccccccccccccCCC
Q 007013 56 ESFFSCTRTSDKGRTGYSGVATFCRVKSPFSSTEVALPV-AAE-----EGFTGLLETSGSKIMEGLEDFSKDELLKIDSE 129 (621)
Q Consensus 56 ~~~~s~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi-~~e-----egltgl~~~~~~~~~~~~~~~~~~~~~~~D~e 129 (621)
..+.+.. .+.-+++||+|.++. .-+ .++ .|+.|.. -..
T Consensus 103 ~~v~s~~-------l~g~~L~Vfvr~~~~-------~~i~~v~~~~v~tG~~g~~----------------------gnK 146 (347)
T 1i9z_A 103 VQLRSGQ-------LVGTALMIFCKESCL-------PSIKNVEGTVKKTGLGGVS----------------------GNK 146 (347)
T ss_dssp EEEEEEE-------ETTEEEEEEEEGGGG-------GGEEEEEEEEEECCCC--------------------------CC
T ss_pred eEEEEee-------ccceEEEEEEehHhh-------hhccceeeeeEeccCCCcc----------------------CCC
Confidence 4433321 233588999998531 112 111 2222211 122
Q ss_pred C-cEEEEEe--CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---------CCcEEEEcccCCC
Q 007013 130 G-RCVITDH--GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------GRRIFVVGDLNIA 182 (621)
Q Consensus 130 G-R~iiv~~--~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---------g~~VII~GDFN~~ 182 (621)
| -.+.+.. ..|.++|+|+........+|.......++.|. ..++|++||||..
T Consensus 147 Gav~vr~~~~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyR 211 (347)
T 1i9z_A 147 GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYR 211 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCC
T ss_pred ceEEEEEEECCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccc
Confidence 2 2222332 46999999998876544456655555555543 4789999999954
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.21 E-value=4.6e-10 Score=119.31 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=82.2
Q ss_pred CeEEEeecccccccchhhhHHHHHHh----hcCCcE--EEEeccchhhhchhHHHHhh--cCCeEEeecccCCCCCCCCc
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLD----SFDADI--ICFQETKLRRQELKSDLVMA--DGYESFFSCTRTSDKGRTGY 72 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~----~l~aDI--IcLQETk~t~~~l~~~l~~~--~GY~~~~s~~~~~~~gr~Gy 72 (621)
|.|+||||||.+..... |.++|. ...||| |+|||+..........+... ..|..+.+. .-+.
T Consensus 28 i~v~TwNv~g~~~~~~~---L~~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~~~Y~~v~s~-------~l~g 97 (357)
T 2xsw_A 28 LFVATWNMQGQKELPPS---LDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSA-------AHGV 97 (357)
T ss_dssp EEEEEEECTTCSSCCSC---CHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEEEEE-------EETT
T ss_pred EEEEEEecCCCCCCccc---HHHHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhCCcccchhhh-------hhhh
Confidence 47899999997543332 566654 357896 88999975433222222222 344333321 1233
Q ss_pred eEEEEEEeecCCCCCcccccccee---eecccCcccccccccccCccccccccccccCCCC-cEEEEEe--CcEEEEEEE
Q 007013 73 SGVATFCRVKSPFSSTEVALPVAA---EEGFTGLLETSGSKIMEGLEDFSKDELLKIDSEG-RCVITDH--GHFILFNVY 146 (621)
Q Consensus 73 sGVAIl~K~~~~f~~~~~~~Pi~~---eegltgl~~~~~~~~~~~~~~~~~~~~~~~D~eG-R~iiv~~--~~~~LinVY 146 (621)
.+++||+|.++. ..+.-+.. ..|+.|. +-..| -.+.+.+ ..|.++|.|
T Consensus 98 ~~l~Vfvr~~~~----~~i~~v~~~~v~tG~~g~----------------------~gNKGav~vr~~~~~t~~~Fvn~H 151 (357)
T 2xsw_A 98 LYMSLFIRRDLI----WFCSEVECSTVTTRIVSQ----------------------IKTKGALGISFTFFGTSFLFITSH 151 (357)
T ss_dssp EEEEEEEEGGGG----GGBBCCEEEEEEEEEEET----------------------TEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEchHHh----hcCceeEecccccccccc----------------------cccccEEEEEEEECCeEEEEEEEc
Confidence 589999998521 00001111 1122111 11222 2222332 468999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHc---------------------CCcEEEEcccCCCCC
Q 007013 147 GPRADSEDTVRIQFKLQFFHVLQ---------------------GRRIFVVGDLNIAPA 184 (621)
Q Consensus 147 ~P~~~~~~~eR~~~k~~fl~~L~---------------------g~~VII~GDFN~~~~ 184 (621)
+.+......+|......+++.|. ..+||++||||...+
T Consensus 152 Laa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 152 FTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp CCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred cCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc
Confidence 98877544566665555666553 267999999997554
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.87 E-value=1.4e-07 Score=98.17 Aligned_cols=147 Identities=21% Similarity=0.204 Sum_probs=79.7
Q ss_pred CeEEEeecccccccchhhhHHHHHHhh--cCCc--EEEEeccchhhhch-----------hHHHH--hh--cCCeEEeec
Q 007013 1 MKIVTYNVNGLRQRVSQFGSLRKLLDS--FDAD--IICFQETKLRRQEL-----------KSDLV--MA--DGYESFFSC 61 (621)
Q Consensus 1 mkIvSwNInGlr~~~~r~~~l~~~L~~--l~aD--IIcLQETk~t~~~l-----------~~~l~--~~--~GY~~~~s~ 61 (621)
|.|+||||||.+.+ . .|.++|.. ..|| ||+|||+.+....+ ...+. .. ..|....+.
T Consensus 10 i~v~TwNvng~~~~-~---~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~ 85 (313)
T 3mtc_A 10 FFAGTYNVNGQSPK-E---CLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLI 85 (313)
T ss_dssp EEEEEEECTTCCCC-S---CTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred EEEEEEEcCCccCc-h---hHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 35789999998753 2 38888875 6799 78999997643211 00011 11 235554332
Q ss_pred ccCCCCCCCCceEEEEEEeecCCCCCccccccceee---ecccCcccccccccccCccccccccccccCCCC-cEEEEEe
Q 007013 62 TRTSDKGRTGYSGVATFCRVKSPFSSTEVALPVAAE---EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEG-RCVITDH 137 (621)
Q Consensus 62 ~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~Pi~~e---egltgl~~~~~~~~~~~~~~~~~~~~~~~D~eG-R~iiv~~ 137 (621)
. -..--+.+|+|.... ..+.-+... .|+.| .+-..| ..+.+.+
T Consensus 86 ~-------lvGl~l~Vfvr~~~~----~~i~~v~~~~v~tG~~g----------------------~~GNKGaV~ir~~~ 132 (313)
T 3mtc_A 86 R-------LVGIMLLLYVKQEHA----AYISEVEAETVGTGIMG----------------------RMGNKGGVAIRFQF 132 (313)
T ss_dssp E-------ETTEEEEEEEEGGGG----GGEEEEEEEEEECSGGG----------------------TSTTSEEEEEEEEE
T ss_pred c-------hhhhhhhhhhhhhhh----hhcceeEeeeecccccc----------------------cccCCceEEEEEEE
Confidence 1 121245577787421 000111111 12211 122334 2233333
Q ss_pred --CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc---------------CCcEEEEcccCCCCC
Q 007013 138 --GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ---------------GRRIFVVGDLNIAPA 184 (621)
Q Consensus 138 --~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~---------------g~~VII~GDFN~~~~ 184 (621)
..|.++|.|+++....-.+|..-...+++.+. ...||++||||-...
T Consensus 133 ~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 133 HNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred CCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 46999999998876544455544445555543 245999999997654
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.69 E-value=1.1e-06 Score=91.43 Aligned_cols=141 Identities=20% Similarity=0.209 Sum_probs=77.2
Q ss_pred eEEEeecccccccchhhhHHHHHHhh-------------cCCcEE--EEeccchhhhc----hhHHHHh--hcCCeEEee
Q 007013 2 KIVTYNVNGLRQRVSQFGSLRKLLDS-------------FDADII--CFQETKLRRQE----LKSDLVM--ADGYESFFS 60 (621)
Q Consensus 2 kIvSwNInGlr~~~~r~~~l~~~L~~-------------l~aDII--cLQETk~t~~~----l~~~l~~--~~GY~~~~s 60 (621)
-|.||||||...+ . .|..+|.- ..+||+ +|||.-..... +...+-. ...|..+.+
T Consensus 11 ~vgTwNv~g~~p~-~---~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s 86 (316)
T 4a9c_A 11 FIGTWNMGSVPPP-K---NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAM 86 (316)
T ss_dssp EEEEEECTTSCCC-S---CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EEEEeEcCCcCCC-c---chhHhhcccccccCcccccccCCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEe
Confidence 5789999996433 2 27777752 347876 88998543221 1111111 135766554
Q ss_pred cccCCCCCCCCceEEEEEEeecCCCCCcccccc-cee-e-----ecccCcccccccccccCccccccccccccCCCCc-E
Q 007013 61 CTRTSDKGRTGYSGVATFCRVKSPFSSTEVALP-VAA-E-----EGFTGLLETSGSKIMEGLEDFSKDELLKIDSEGR-C 132 (621)
Q Consensus 61 ~~~~~~~gr~GysGVAIl~K~~~~f~~~~~~~P-i~~-e-----egltgl~~~~~~~~~~~~~~~~~~~~~~~D~eGR-~ 132 (621)
.. -+.-+++||+|..+ .+ |.. + .|+.|. .-..|- .
T Consensus 87 ~~-------L~gi~l~Vfvk~~~--------~~~I~~v~~~~v~tG~~g~----------------------~GNKGaV~ 129 (316)
T 4a9c_A 87 QS-------LWNIKVAVLVKPEH--------ENRISHVSTSSVKTGIANT----------------------LGNKGAVG 129 (316)
T ss_dssp EE-------ETTEEEEEEECGGG--------GGGEEEEEEEEEEEC----------------------------CEEEEE
T ss_pred ee-------ehheeeeeEEeHHH--------hhhCcccccceeeeeeeEe----------------------cCCCceEE
Confidence 22 23347888998742 12 111 1 132221 112332 2
Q ss_pred EEEEe--CcEEEEEEEcCCCCCchhHHHHHHHHHHHHHc--------------CCcEEEEcccCCCC
Q 007013 133 VITDH--GHFILFNVYGPRADSEDTVRIQFKLQFFHVLQ--------------GRRIFVVGDLNIAP 183 (621)
Q Consensus 133 iiv~~--~~~~LinVY~P~~~~~~~eR~~~k~~fl~~L~--------------g~~VII~GDFN~~~ 183 (621)
|.+.+ ..|.++|.|+.+....-.+|.+-...+++.+. ..+||++||||-..
T Consensus 130 ir~~~~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi 196 (316)
T 4a9c_A 130 VSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRL 196 (316)
T ss_dssp EEEEETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCB
T ss_pred EEEEECCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCc
Confidence 33333 46999999998876544556554444555443 24699999999754
No 33
>1hy9_A Cocaine and amphetamine regulated transcript protein; cysteine knot, signaling protein; NMR {Homo sapiens} SCOP: g.3.17.1
Probab=75.02 E-value=1.3 Score=31.10 Aligned_cols=35 Identities=34% Similarity=0.869 Sum_probs=26.1
Q ss_pred CCCCCCCCCccccceeecCCCCCCCceeeecCCCCCCCCCCCCCCCcee
Q 007013 564 SIPLCKGHKEPCVARVVKKPGPTFGRRFFVCARAEGPASNPEANCGYFK 612 (621)
Q Consensus 564 ~~p~C~~~~~~~~~~~v~k~g~n~Gr~f~~C~~~~g~~~~~~~~c~ff~ 612 (621)
..|.|. -+|.|.+| | |+-.||. --|+|+ ..||||+
T Consensus 3 ~~P~Cd-~GeqCAvR---k-G~Rigkl-C~C~rg--------~~Cn~fl 37 (41)
T 1hy9_A 3 QVPMCD-AGEQCAVR---K-GARIGKL-CDCPRG--------TSCNSFL 37 (41)
T ss_dssp CCCBCC-SSSCSEEE---C-SSSEEEC-CBCCTT--------CCBCTTT
T ss_pred cCCcCC-ccchhhhh---c-ccccchh-cCCCCC--------Ccchhhh
Confidence 479999 99999754 3 8888874 345543 7899996
No 34
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=28.15 E-value=13 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=9.6
Q ss_pred CccccccccccC
Q 007013 456 GQLSLKSFFHKR 467 (621)
Q Consensus 456 ~q~~l~~fF~~~ 467 (621)
|-.+|-+||++=
T Consensus 8 g~~TLesFFK~L 19 (26)
T 2zvk_U 8 GMQTLESFFKPL 19 (26)
T ss_pred ccccHHHHhccC
Confidence 445999999984
Done!