Query 007015
Match_columns 621
No_of_seqs 356 out of 1127
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 8.7E-85 1.9E-89 663.9 22.2 248 212-483 1-258 (258)
2 KOG4441 Proteins containing BT 100.0 2.8E-30 6E-35 291.3 15.1 235 44-343 26-261 (571)
3 PHA02713 hypothetical protein; 100.0 6.2E-29 1.3E-33 279.9 13.6 228 45-341 16-247 (557)
4 PHA02790 Kelch-like protein; P 100.0 2.6E-28 5.7E-33 270.2 12.1 178 47-254 15-195 (480)
5 PHA03098 kelch-like protein; P 99.9 7.3E-26 1.6E-30 252.4 15.0 222 51-342 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 1.7E-17 3.7E-22 146.4 8.6 104 48-159 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 8.2E-16 1.8E-20 128.0 6.3 90 56-153 1-90 (90)
8 KOG4350 Uncharacterized conser 99.5 1.7E-13 3.7E-18 145.1 11.4 179 47-253 37-219 (620)
9 KOG2075 Topoisomerase TOP1-int 99.4 2.4E-12 5.3E-17 139.2 11.6 186 45-254 105-295 (521)
10 KOG4591 Uncharacterized conser 99.1 1.1E-10 2.5E-15 114.4 8.5 171 33-233 42-220 (280)
11 KOG4682 Uncharacterized conser 98.9 4.4E-09 9.4E-14 112.2 9.3 176 48-253 63-246 (488)
12 KOG0783 Uncharacterized conser 98.6 2.5E-08 5.3E-13 113.6 4.3 161 54-237 712-881 (1267)
13 KOG0783 Uncharacterized conser 98.3 1.4E-06 3E-11 99.8 7.0 66 52-119 556-633 (1267)
14 PF11822 DUF3342: Domain of un 97.9 1.3E-05 2.8E-10 84.8 4.7 94 57-160 1-104 (317)
15 PF02214 BTB_2: BTB/POZ domain 96.7 0.00074 1.6E-08 58.9 1.6 82 57-141 1-88 (94)
16 smart00512 Skp1 Found in Skp1 96.7 0.0022 4.8E-08 57.3 4.6 80 57-139 4-104 (104)
17 PF07707 BACK: BTB And C-termi 96.5 0.0005 1.1E-08 59.9 -0.6 72 174-255 1-73 (103)
18 KOG2716 Polymerase delta-inter 96.4 0.011 2.3E-07 60.6 8.3 96 57-160 7-105 (230)
19 KOG2838 Uncharacterized conser 95.8 0.0064 1.4E-07 63.1 3.3 69 52-122 128-198 (401)
20 smart00875 BACK BTB And C-term 95.2 0.023 5E-07 48.7 4.0 72 174-255 1-73 (101)
21 KOG3473 RNA polymerase II tran 95.2 0.053 1.1E-06 48.5 6.1 74 62-138 25-111 (112)
22 PF03931 Skp1_POZ: Skp1 family 94.3 0.12 2.7E-06 42.0 5.9 55 57-116 3-58 (62)
23 KOG1724 SCF ubiquitin ligase, 93.9 0.083 1.8E-06 51.5 4.9 91 61-160 12-127 (162)
24 KOG2838 Uncharacterized conser 89.8 0.21 4.7E-06 52.2 2.5 58 65-124 262-330 (401)
25 KOG0511 Ankyrin repeat protein 86.9 0.73 1.6E-05 50.3 4.3 75 64-141 301-379 (516)
26 KOG3840 Uncharaterized conserv 82.5 15 0.00033 39.4 11.5 92 49-142 90-187 (438)
27 KOG1987 Speckle-type POZ prote 81.1 2 4.3E-05 44.9 4.5 90 63-160 109-201 (297)
28 KOG2714 SETA binding protein S 79.0 5.4 0.00012 44.4 7.1 83 57-141 13-99 (465)
29 PF08581 Tup_N: Tup N-terminal 71.8 6.6 0.00014 34.1 4.4 31 537-567 34-64 (79)
30 KOG1665 AFH1-interacting prote 71.1 13 0.00029 38.3 7.0 90 57-154 11-105 (302)
31 KOG2715 Uncharacterized conser 69.0 42 0.0009 33.4 9.6 95 57-159 23-121 (210)
32 PF01466 Skp1: Skp1 family, di 65.9 3.1 6.7E-05 35.4 1.2 33 122-160 11-43 (78)
33 COG5201 SKP1 SCF ubiquitin lig 61.5 28 0.0006 33.1 6.6 90 60-160 8-122 (158)
34 PF01166 TSC22: TSC-22/dip/bun 59.2 16 0.00034 30.0 4.0 32 533-564 12-43 (59)
35 PF04508 Pox_A_type_inc: Viral 58.5 13 0.00028 25.0 2.8 18 543-560 2-19 (23)
36 KOG0511 Ankyrin repeat protein 57.7 1.8 4E-05 47.4 -2.0 70 44-118 137-210 (516)
37 PF14363 AAA_assoc: Domain ass 53.4 7.2 0.00015 34.7 1.3 42 436-478 30-71 (98)
38 KOG4603 TBP-1 interacting prot 41.2 35 0.00076 33.9 4.0 55 536-590 108-176 (201)
39 PF07407 Seadorna_VP6: Seadorn 40.1 38 0.00081 36.8 4.4 32 528-559 32-63 (420)
40 COG3510 CmcI Cephalosporin hyd 37.6 24 0.00052 35.9 2.4 37 432-468 182-220 (237)
41 TIGR02894 DNA_bind_RsfA transc 37.3 68 0.0015 31.5 5.3 30 534-563 103-132 (161)
42 TIGR01834 PHA_synth_III_E poly 35.9 50 0.0011 35.8 4.6 30 541-570 288-317 (320)
43 PF15294 Leu_zip: Leucine zipp 34.4 67 0.0015 34.2 5.2 39 531-569 128-166 (278)
44 PF14077 WD40_alt: Alternative 32.7 27 0.00058 27.4 1.4 19 544-562 13-31 (48)
45 COG2433 Uncharacterized conser 32.6 67 0.0014 37.6 5.1 151 399-566 299-467 (652)
46 PF00170 bZIP_1: bZIP transcri 32.6 1.2E+02 0.0025 24.7 5.3 18 544-561 42-59 (64)
47 COG3919 Predicted ATP-grasp en 32.2 22 0.00047 38.3 1.2 40 69-108 166-206 (415)
48 PF10929 DUF2811: Protein of u 31.8 33 0.00072 28.1 1.9 18 446-463 9-26 (57)
49 PF09789 DUF2353: Uncharacteri 31.7 65 0.0014 35.0 4.6 37 532-568 76-112 (319)
50 PF11365 DUF3166: Protein of u 30.6 1.3E+02 0.0029 27.1 5.7 38 533-570 6-43 (96)
51 PHA01750 hypothetical protein 30.4 1E+02 0.0022 26.0 4.5 29 536-564 43-71 (75)
52 PRK14127 cell division protein 30.3 66 0.0014 29.6 3.8 30 530-559 39-68 (109)
53 PF10473 CENP-F_leu_zip: Leuci 30.1 91 0.002 30.0 4.9 35 532-566 77-111 (140)
54 PF07716 bZIP_2: Basic region 29.9 1.1E+02 0.0024 24.1 4.6 30 539-568 22-51 (54)
55 KOG4603 TBP-1 interacting prot 29.6 1.1E+02 0.0023 30.6 5.2 39 532-570 76-114 (201)
56 PF07989 Microtub_assoc: Micro 29.4 91 0.002 26.7 4.3 37 530-566 38-74 (75)
57 PF04977 DivIC: Septum formati 29.1 1.4E+02 0.003 24.7 5.3 35 534-568 16-50 (80)
58 smart00338 BRLZ basic region l 27.9 1.3E+02 0.0027 24.5 4.8 29 536-564 34-62 (65)
59 KOG4571 Activating transcripti 27.6 78 0.0017 33.9 4.3 40 530-569 250-289 (294)
60 PF13815 Dzip-like_N: Iguana/D 26.0 1.7E+02 0.0037 26.9 5.8 53 494-564 64-116 (118)
61 PRK10722 hypothetical protein; 25.9 5.4E+02 0.012 27.1 9.9 109 424-569 88-203 (247)
62 PF07106 TBPIP: Tat binding pr 25.2 1.7E+02 0.0037 28.3 6.0 37 534-570 71-107 (169)
63 PF11336 DUF3138: Protein of u 24.4 86 0.0019 35.4 4.0 27 532-558 22-48 (514)
64 PF05529 Bap31: B-cell recepto 23.7 1.3E+02 0.0028 29.8 4.8 35 535-569 154-188 (192)
65 PF11853 DUF3373: Protein of u 23.5 58 0.0012 37.3 2.6 33 536-569 26-58 (489)
66 PF08776 VASP_tetra: VASP tetr 23.3 1.7E+02 0.0036 22.4 4.1 21 544-564 5-26 (40)
67 PRK15322 invasion protein OrgB 22.1 2E+02 0.0044 29.4 5.8 85 374-458 88-203 (210)
68 PF12017 Tnp_P_element: Transp 21.9 1.4E+02 0.0031 31.0 4.9 21 535-555 18-38 (236)
69 PF11123 DNA_Packaging_2: DNA 21.9 57 0.0012 28.2 1.7 15 445-459 31-45 (82)
70 PRK13922 rod shape-determining 21.8 1.4E+02 0.003 31.2 4.9 35 530-564 71-108 (276)
71 TIGR02209 ftsL_broad cell divi 21.8 2.1E+02 0.0046 24.1 5.2 35 536-570 25-59 (85)
72 PLN03205 ATR interacting prote 21.2 87 0.0019 35.2 3.3 30 534-563 133-162 (652)
73 PF13764 E3_UbLigase_R4: E3 ub 21.2 64 0.0014 39.2 2.5 67 377-461 260-335 (802)
74 PF06005 DUF904: Protein of un 20.8 2.6E+02 0.0057 23.8 5.5 37 534-570 17-53 (72)
75 PF04420 CHD5: CHD5-like prote 20.1 2.1E+02 0.0045 27.8 5.4 37 534-570 39-87 (161)
76 KOG4350 Uncharacterized conser 20.1 82 0.0018 35.4 2.8 108 122-249 145-263 (620)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=8.7e-85 Score=663.87 Aligned_cols=248 Identities=47% Similarity=0.891 Sum_probs=223.0
Q ss_pred cccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 007015 212 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG 291 (621)
Q Consensus 212 ~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (621)
.||||||++.|++++|+|||.+|+++|+++++|+++|++||++|||++.++... ... .....+..
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~---~~~------------~~~~~~~~ 65 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSG---SSS------------SAESSTSS 65 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccc---ccc------------cccccchh
Confidence 479999999999999999999999999999999999999999999998543111 000 01223456
Q ss_pred hHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhccCCHHHHHHHHHHHhhhhcccccccccccCCCCccccccCCCC
Q 007015 292 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLNSPE 371 (621)
Q Consensus 292 ~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR~A~~l~as~~cr~~LE~RIg~qLdqAtl~DLLIPs~~~~~~~~~~~~~ 371 (621)
..+||.+||+||+|||.+++++||+|||+|||+|+++++|++||.+||+|||+|||||||+|||||+ ++.++
T Consensus 66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~------- 137 (258)
T PF03000_consen 66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGE------- 137 (258)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcc-------
Confidence 7899999999999999999999999999999999999999999999999999999999999999999 33332
Q ss_pred CccccchHHHHHHHHHHHhhhhhh----------hhhhcchhhHHHHhhHHHHHhhhcCCCCCChhHHHHHHHhcCCccc
Q 007015 372 HNTMHNIDVVQRIMDYFLMHEQQQ----------QQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENAR 441 (621)
Q Consensus 372 ~~tlyDvd~V~riv~~Fl~~~~~~----------~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR 441 (621)
.|+||||+|+|||++||.+++.. ...++..++.+||||||+||+|||+|+||+|+||++|||+||++||
T Consensus 138 -~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR 216 (258)
T PF03000_consen 138 -DTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSAR 216 (258)
T ss_pred -cchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhh
Confidence 29999999999999999984321 1125678999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhhCCCCCHHHHHhhhcccccCCCCHHHh
Q 007015 442 TCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDAC 483 (621)
Q Consensus 442 ~~~DgLYRAIDiYLK~Hp~lse~Er~~lCr~~dc~KLS~eAc 483 (621)
++|||||||||||||+||+||++||++||++|||||||+|||
T Consensus 217 ~~hD~LYrAID~YLk~Hp~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 217 PSHDGLYRAIDIYLKAHPGLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred hccchHHHHHHHHHHHcccCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=291.29 Aligned_cols=235 Identities=14% Similarity=0.221 Sum_probs=202.4
Q ss_pred cchhhhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeec
Q 007015 44 EHSWFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN 123 (621)
Q Consensus 44 ~~~w~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It 123 (621)
+-+-+|.++.+|||+|.|++++|++||.||||+|+|||+||+.+++|+.+.+|+|++++ +++++++++|+||+++.|+
T Consensus 26 ~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~ 103 (571)
T KOG4441|consen 26 GLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEIS 103 (571)
T ss_pred HHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEec
Confidence 34568999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC-
Q 007015 124 PNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN- 202 (621)
Q Consensus 124 ~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~- 202 (621)
.+||+.|+.||.+|||++ |++.|+.||.+++ .+.||.++..+|+.+++ ..|...|-...
T Consensus 104 ~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~~-----~~L~~~a~~~i~ 163 (571)
T KOG4441|consen 104 EDNVQELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHSC-----TELLEVADEYIL 163 (571)
T ss_pred hHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCc-----HHHHHHHHHHHH
Confidence 999999999999999998 8888999999999 58899999999999986 45555553332
Q ss_pred ccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhc
Q 007015 203 STTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILN 282 (621)
Q Consensus 203 ~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (621)
.+|.++ +-.|||..|+.+.+..+|+......-+|+.|+++++.|+++..+.
T Consensus 164 ~~F~~v-----~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~------------------------ 214 (571)
T KOG4441|consen 164 QHFAEV-----SKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEE------------------------ 214 (571)
T ss_pred HHHHHH-----hccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhh------------------------
Confidence 234434 347999999999999999887777778999999999999754422
Q ss_pred cCccccccchHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhccCCHHHHHHHHHHHh
Q 007015 283 AGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVG 343 (621)
Q Consensus 283 ~~~~~~~~~~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR~A~~l~as~~cr~~LE~RIg 343 (621)
++.+-..|+++|.. | .++..||...+.....+..++.|+..|..-..
T Consensus 215 --------R~~~~~~ll~~vr~--~----ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~ 261 (571)
T KOG4441|consen 215 --------REEHLPALLEAVRL--P----LLPPQFLVEIVESEPLIKRDSACRDLLDEAKK 261 (571)
T ss_pred --------HHHHHHHHHHhcCc--c----CCCHHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 23344567777763 3 78899999999999999999999999887663
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.96 E-value=6.2e-29 Score=279.90 Aligned_cols=228 Identities=15% Similarity=0.146 Sum_probs=182.2
Q ss_pred chhhhccCCCeeEEEEEc-CeEEeecccccccccHHHHHhhcCCCCCCC-cccEEecCCCCCHHHHHHHHHhhcCCCeee
Q 007015 45 HSWFVTSQIPTDLSIQVQ-DVTFTVHKYPLMSKCGYIARLELQPSISNL-GYDLKLENFPGGSETFEIILKFCYGLPIAF 122 (621)
Q Consensus 45 ~~w~r~~~~~~DV~I~V~-g~~F~~HK~vLas~S~YFr~lf~~~~~e~~-~~~v~L~~~pGG~~~felll~FcYt~~i~I 122 (621)
-.-+|.++.+|||+|.|+ |++|+|||.||||+|+||++||+.++.|+. +.+|+|++++ +++|+.+++|+||++ |
T Consensus 16 l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i 91 (557)
T PHA02713 16 ISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--I 91 (557)
T ss_pred HHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--C
Confidence 345888999999999998 899999999999999999999999998643 6789999999 999999999999997 7
Q ss_pred cCCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC
Q 007015 123 NPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN 202 (621)
Q Consensus 123 t~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~ 202 (621)
|.+||++|+.||++|||+. |++.|++||.+.+ ...||.+++.+|+.+.+ ..|...|....
T Consensus 92 ~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~~-----~~L~~~a~~~i 151 (557)
T PHA02713 92 SSMNVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMSH-----IPIVKYIKRML 151 (557)
T ss_pred CHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhccc-----hHHHHHHHHHH
Confidence 9999999999999999998 8999999999999 58899999987877764 22444443332
Q ss_pred -ccchhhhcccccchhcccccCHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhh
Q 007015 203 -STTEDIANRQGWWFDDVATLGIDHFMRIITTIKV-KGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSI 280 (621)
Q Consensus 203 -~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~-~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~ 280 (621)
.+|.++.. .|||..|+.+.+..+|+.... ...+|+.|++++++|+++....
T Consensus 152 ~~~f~~v~~-----~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~---------------------- 204 (557)
T PHA02713 152 MSNIPTLIT-----TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYIT---------------------- 204 (557)
T ss_pred HHHHHHHhC-----ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHH----------------------
Confidence 23443332 689999999999999976553 3447999999999999764321
Q ss_pred hccCccccccchHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007015 281 LNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKR 341 (621)
Q Consensus 281 ~~~~~~~~~~~~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR~A~~l~as~~cr~~LE~R 341 (621)
+ .....||+.|+- | .++.++++ .+.....+..++.|+.-|+..
T Consensus 205 ----------r-~~~~~ll~~VR~--~----~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a 247 (557)
T PHA02713 205 ----------E-EQLLCILSCIDI--Q----NLDKKSRL-LLYSNKTINMYPSCIQFLLDN 247 (557)
T ss_pred ----------H-HHHhhhHhhhhH--h----hcchhhhh-hhcchHHHHhhHHHHHHHhhh
Confidence 1 113367888873 3 35566766 455567778899999888663
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=270.20 Aligned_cols=178 Identities=10% Similarity=0.064 Sum_probs=149.8
Q ss_pred hhhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEe--cCCCCCHHHHHHHHHhhcCCCeeecC
Q 007015 47 WFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKL--ENFPGGSETFEIILKFCYGLPIAFNP 124 (621)
Q Consensus 47 w~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L--~~~pGG~~~felll~FcYt~~i~It~ 124 (621)
-+|.++.+|||++ |.|.+|+|||.||||+|+|||+||+++++|+. .+|.+ .+++ +++|+.+++|+|||+|.||.
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~ 90 (480)
T PHA02790 15 ALSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDS 90 (480)
T ss_pred HHHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEec
Confidence 3677899999877 55679999999999999999999999998864 45665 3888 99999999999999999999
Q ss_pred CchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC-c
Q 007015 125 NNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN-S 203 (621)
Q Consensus 125 ~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~-~ 203 (621)
+||+.|+.||.+|||++ |++.|++||.+.+ .+.||.+++.+|+.|++ +.|..+|.... .
T Consensus 91 ~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~~-----~~L~~~a~~fi~~ 150 (480)
T PHA02790 91 HNVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYGL-----SNLLCHTKDFIAK 150 (480)
T ss_pred ccHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhCH-----HHHHHHHHHHHHH
Confidence 99999999999999998 8899999999999 68899999999999996 67777765544 3
Q ss_pred cchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 007015 204 TTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKK 254 (621)
Q Consensus 204 ~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~ 254 (621)
+|..+.. .-++||..|++ ..+|+.......+|+.|++++++|+++
T Consensus 151 nF~~v~~---~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 151 HFLELED---DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred hHHHHhc---ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 4443321 01379999996 457766555556899999999999985
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=7.3e-26 Score=252.35 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=176.4
Q ss_pred cCCCeeEEEEE--cCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCchh
Q 007015 51 SQIPTDLSIQV--QDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIA 128 (621)
Q Consensus 51 ~~~~~DV~I~V--~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~ 128 (621)
++.+|||+|.| +|++|++||.+|+++|+||++||+.++. +.+|+|++ + +++|+.+++|+|||++.|+.+||.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~ 79 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVK 79 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHH
Confidence 68999999998 9999999999999999999999999886 46899999 8 999999999999999999999999
Q ss_pred hHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC-ccchh
Q 007015 129 PLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN-STTED 207 (621)
Q Consensus 129 ~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~-~~~~~ 207 (621)
+|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.|++ +.|...+-... .+|..
T Consensus 80 ~ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~~i~~nf~~ 139 (534)
T PHA03098 80 DILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYNYIRNNIEL 139 (534)
T ss_pred HHHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHHHH
Confidence 9999999999998 9999999999988 58899999999999985 33333222211 12222
Q ss_pred hhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccc
Q 007015 208 IANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEE 287 (621)
Q Consensus 208 l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (621)
+.. .++|..|+.+.+..+|+.......+|+.|+++++.|+++....
T Consensus 140 v~~-----~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~----------------------------- 185 (534)
T PHA03098 140 IYN-----DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNN----------------------------- 185 (534)
T ss_pred Hhc-----CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhh-----------------------------
Confidence 222 5799999999999999765555558999999999999754211
Q ss_pred cccchHHHHHHHHHHHHhCCCCCCCccHHHHHHHHH------HHhhccCCHHHHHHHHHHH
Q 007015 288 VSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLK------MAMVYNASPALISELEKRV 342 (621)
Q Consensus 288 ~~~~~~~qr~LLE~Iv~lLP~~k~~vsc~FLf~LLR------~A~~l~as~~cr~~LE~RI 342 (621)
+...-..|++.|+- ..++-.+|..+.+ ....+ .+..|+..++...
T Consensus 186 ---r~~~~~~ll~~vR~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 186 ---KYKDICLILKVLRI------TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred ---hHhHHHHHHhhccc------cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 12233568887774 3677888888775 22333 6777887765544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.71 E-value=1.7e-17 Score=146.39 Aligned_cols=104 Identities=27% Similarity=0.338 Sum_probs=92.6
Q ss_pred hhccCCCeeEEEEEc-CeEEeecccccccccHHHHHhhcCC-CCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeec-C
Q 007015 48 FVTSQIPTDLSIQVQ-DVTFTVHKYPLMSKCGYIARLELQP-SISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-P 124 (621)
Q Consensus 48 ~r~~~~~~DV~I~V~-g~~F~~HK~vLas~S~YFr~lf~~~-~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It-~ 124 (621)
++.++.+||++|.|+ +.+|++||.+|+++|+||++||... ..+....+|.+.+++ +++|+.+++|+|++.+.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 566789999999999 7999999999999999999999987 454344578999999 9999999999999999999 9
Q ss_pred CchhhHHHhhcccCcccccccccHHHHHHHHHHHH
Q 007015 125 NNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLV 159 (621)
Q Consensus 125 ~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~ 159 (621)
+|+..++.+|++|+|++ |...|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999998 999999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.61 E-value=8.2e-16 Score=127.97 Aligned_cols=90 Identities=21% Similarity=0.330 Sum_probs=82.6
Q ss_pred eEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCchhhHHHhhc
Q 007015 56 DLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASE 135 (621)
Q Consensus 56 DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~~L~~AA~ 135 (621)
||+|.|+|..|++||.+|+++|+||++||.....+.....+.+.+++ +++|+.+++|+||+++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999987665456789999988 9999999999999999999999999999999
Q ss_pred ccCcccccccccHHHHHH
Q 007015 136 FLDMSEEYEDGNLISKTE 153 (621)
Q Consensus 136 ~LqM~e~~~~~NL~~~ce 153 (621)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999997 666664
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=145.06 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=136.3
Q ss_pred hhhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCc
Q 007015 47 WFVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNN 126 (621)
Q Consensus 47 w~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~N 126 (621)
.++......||++.|++..|++||.+||++|.|||+|+..+|.|+.+..|.|.+-. +++|..+++|+|||++.++...
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETN--SEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccccc--HHHHHHHHHHHhhcceecccch
Confidence 46777889999999999999999999999999999999999999888899999877 9999999999999999998755
Q ss_pred h---hhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhcccC-
Q 007015 127 I---APLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASREN- 202 (621)
Q Consensus 127 V---~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~- 202 (621)
- .+.+.-|...++.+ |-.....||.+.+ .+.|-.-++..|--|++ ..|....|.+.
T Consensus 115 ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~mfmD 174 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMMFMD 174 (620)
T ss_pred HHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHHHHh
Confidence 4 44555666666665 8888999999987 56776666777777775 33333332221
Q ss_pred ccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHH
Q 007015 203 STTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 253 (621)
Q Consensus 203 ~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak 253 (621)
.+..++ --.+.|..|+.+.++.++.-.. --..|..|+-|+..|-+
T Consensus 175 rnA~~l-----L~~~sFn~LSk~sL~e~l~RDs-FfApE~~IFlAv~~W~~ 219 (620)
T KOG4350|consen 175 RNADQL-----LEDPSFNRLSKDSLKELLARDS-FFAPELKIFLAVRSWHQ 219 (620)
T ss_pred cCHHhh-----hcCcchhhhhHHHHHHHHhhhc-ccchHHHHHHHHHHHHh
Confidence 011111 1145788999999998884311 11367789999998875
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.37 E-value=2.4e-12 Score=139.23 Aligned_cols=186 Identities=11% Similarity=0.181 Sum_probs=144.9
Q ss_pred chhhhccCCCeeEEEEEcC-----eEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCC
Q 007015 45 HSWFVTSQIPTDLSIQVQD-----VTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP 119 (621)
Q Consensus 45 ~~w~r~~~~~~DV~I~V~g-----~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~ 119 (621)
+.-+..+...+||.+.|++ +.||+||.+|+..|.-|.+||.+++.+....+|.++|+. |.+|...++|+|+-.
T Consensus 105 ~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsde 182 (521)
T KOG2075|consen 105 QAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDE 182 (521)
T ss_pred hHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcch
Confidence 3345667899999999983 799999999999999999999999887557799999999 999999999999999
Q ss_pred eeecCCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhHhhHHHHHHHhc
Q 007015 120 IAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKAS 199 (621)
Q Consensus 120 i~It~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~rCidsLa~ka~ 199 (621)
+.+.++||..++.||.-.-.+. |...|.+||+..+..- +.+.-|-+|- .+.++-.+.++|++.|....-
T Consensus 183 v~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~~--naf~~L~q~A---~lf~ep~Li~~c~e~id~~~~ 251 (521)
T KOG2075|consen 183 VKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMAD--NAFLELFQRA---KLFDEPSLISICLEVIDKSFE 251 (521)
T ss_pred hhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCCh--HHHHHHHHHH---HhhcCHHHHHHHHHHhhhHHH
Confidence 9999999999999998777776 9999999999988522 3334444442 344666788899888765331
Q ss_pred ccCccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHHHH
Q 007015 200 RENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKK 254 (621)
Q Consensus 200 ~~~~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Yak~ 254 (621)
. . + + .=||-|+-.+ .+.|+.++.. ....++|-.+++++.+|+.-
T Consensus 252 ~-a-----l-~--~EGf~did~~-~dt~~evl~r-~~l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 252 D-A-----L-T--PEGFCDIDST-RDTYEEVLRR-DTLEAREFRLFEAALKWAEA 295 (521)
T ss_pred h-h-----h-C--ccceeehhhH-HHHHHHHHhh-cccchhHHHHHHHHHhhccC
Confidence 1 1 0 0 0134455444 8998888855 33346788999999999963
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.14 E-value=1.1e-10 Score=114.41 Aligned_cols=171 Identities=17% Similarity=0.215 Sum_probs=129.5
Q ss_pred ccccchhhhhcc---chhhhccCCCeeEEEEEc---CeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHH
Q 007015 33 FITIADSFEKKE---HSWFVTSQIPTDLSIQVQ---DVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSE 106 (621)
Q Consensus 33 ~~~~~~~~~~~~---~~w~r~~~~~~DV~I~V~---g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~ 106 (621)
..|.|++|..+- -+-+.....++||++.++ +..+++||+|||++|++.+ |.++..+ ...+..+.|.. ++
T Consensus 42 keSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-kse~~~~dDad--~E 116 (280)
T KOG4591|consen 42 KESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KSEELDLDDAD--FE 116 (280)
T ss_pred ccCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-chhhhcccccC--HH
Confidence 456677777664 235677889999999998 4789999999999999775 4555444 44567788988 99
Q ss_pred HHHHHHHhhcCCCeeecCCch--hhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHh
Q 007015 107 TFEIILKFCYGLPIAFNPNNI--APLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENL 184 (621)
Q Consensus 107 ~felll~FcYt~~i~It~~NV--~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~ 184 (621)
+|..+++++||-+|++..+.+ ..|+..|.-+|..- |.++|+.=|...+ ...||..+..+||++
T Consensus 117 a~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~ 181 (280)
T KOG4591|consen 117 AFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEEL 181 (280)
T ss_pred HHHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHh
Confidence 999999999999999988876 46788899999876 8899999888877 689999999999998
Q ss_pred hhhHhhHHHHHHHhcccCccchhhhcccccchhcccccCHHHHHHHHHH
Q 007015 185 QIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITT 233 (621)
Q Consensus 185 ~iv~rCidsLa~ka~~~~~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~a 233 (621)
+. +....--++.+.. ..++---+||+.+++.++-++|..
T Consensus 182 n~-~qL~n~~~eiIA~---------~W~dL~~a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 182 NA-RQLMNVAAEIIAG---------AWDDLGKADFAQMSAALLYKLIDG 220 (280)
T ss_pred hH-HHHHHHHHHHHHh---------hccccChHHHHhccHHHHHHHHcC
Confidence 84 1111111111100 112223579999999999998854
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.90 E-value=4.4e-09 Score=112.24 Aligned_cols=176 Identities=10% Similarity=0.112 Sum_probs=138.5
Q ss_pred hhccCCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEe--c--CCCCCHHHHHHHHHhhcCCCeeec
Q 007015 48 FVTSQIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKL--E--NFPGGSETFEIILKFCYGLPIAFN 123 (621)
Q Consensus 48 ~r~~~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L--~--~~pGG~~~felll~FcYt~~i~It 123 (621)
+..+|.-+||+|.+-|.+.++||.-| ..|+||..||.+..+|++...|.| . .|+ ..+|..++.=.|..+|+|.
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id--~~al~~a~gsLY~dEveI~ 139 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNID--VVALQVAFGSLYRDEVEIK 139 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCccc--HHHHHHHHhhhhhhheecc
Confidence 45589999999999999999999877 789999999999888877666554 3 466 9999999999999999999
Q ss_pred CCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhhhhH---hhHHHHHHHhcc
Q 007015 124 PNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVR---RCCDSIAWKASR 200 (621)
Q Consensus 124 ~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~iv~---rCidsLa~ka~~ 200 (621)
.+.|..++.||.+||++. |+++|.+-+.+.+ ..++-......+..||+++ .|.+-|...--.
T Consensus 140 l~dv~gvlAaA~~lqldg------l~qrC~evMie~l---------spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~ 204 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDG------LIQRCGEVMIETL---------SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMT 204 (488)
T ss_pred HHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhc---------ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHh
Confidence 999999999999999997 9999999999998 5778888899999999632 232222211100
Q ss_pred cCccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCC-hhhHHHHHHHHHH
Q 007015 201 ENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTK-PEIIGKCIMHYAK 253 (621)
Q Consensus 201 ~~~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~-ee~I~~al~~Yak 253 (621)
+-+ ..-|-.++++++..|+.+-..-.+. |=-++..+..|.-
T Consensus 205 -------i~~-----~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 205 -------IQN-----VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred -------hhh-----HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 001 1255689999999999554444444 6678888888864
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.61 E-value=2.5e-08 Score=113.59 Aligned_cols=161 Identities=16% Similarity=0.208 Sum_probs=110.9
Q ss_pred CeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcC-CCeeec-----CCch
Q 007015 54 PTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYG-LPIAFN-----PNNI 127 (621)
Q Consensus 54 ~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt-~~i~It-----~~NV 127 (621)
.|||++. +|..|+|||.+|++++.||..||.....|+.. |...+.|-.+|.++.+++|.|+ -+.++- .+=+
T Consensus 712 d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 712 DTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred eEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 3454444 78899999999999999999999986665444 4444455459999999999994 444431 1225
Q ss_pred hhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHhh---hhHhhHHHHHHHhcccCcc
Q 007015 128 APLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENST 204 (621)
Q Consensus 128 ~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~~---iv~rCidsLa~ka~~~~~~ 204 (621)
..++..|+.|=+++ |.+.||.-|.+.+ .+++|-.++.+|..|+ +-.+|+|-+.... ..
T Consensus 789 ~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~----~~ 849 (1267)
T KOG0783|consen 789 FEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI----EF 849 (1267)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH----HH
Confidence 67888899998988 8999999999988 6999999999999998 4567877654332 22
Q ss_pred chhhhcccccchhcccccCHHHHHHHHHHHhhc
Q 007015 205 TEDIANRQGWWFDDVATLGIDHFMRIITTIKVK 237 (621)
Q Consensus 205 ~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~ 237 (621)
+-+.+.-..|=.+-+..| -++|.+++.+|..+
T Consensus 850 ~Learsi~~~dg~~LK~l-~~~yrkm~~vfD~R 881 (1267)
T KOG0783|consen 850 FLEARSISEWDGFHLKKL-AQRYRKMLSVFDQR 881 (1267)
T ss_pred HHHhccHhhhcchHHHHH-HHHHHHHhhhccce
Confidence 211111112322222333 35666677655544
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.26 E-value=1.4e-06 Score=99.76 Aligned_cols=66 Identities=26% Similarity=0.453 Sum_probs=56.7
Q ss_pred CCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCC------------CcccEEecCCCCCHHHHHHHHHhhcCCC
Q 007015 52 QIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISN------------LGYDLKLENFPGGSETFEIILKFCYGLP 119 (621)
Q Consensus 52 ~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~------------~~~~v~L~~~pGG~~~felll~FcYt~~ 119 (621)
+-+.|||++||+..||+||++|+++|++||++|....+.+ ..+.|.+.++| |.+||+++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 4678999999999999999999999999999998754432 23456688999 999999999999974
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.87 E-value=1.3e-05 Score=84.78 Aligned_cols=94 Identities=24% Similarity=0.393 Sum_probs=76.4
Q ss_pred EEEEEcC------eEEeecccccccccHHHHHhhcC---CCCCCCcccEEec-CCCCCHHHHHHHHHhhcCCCeeecCCc
Q 007015 57 LSIQVQD------VTFTVHKYPLMSKCGYIARLELQ---PSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNN 126 (621)
Q Consensus 57 V~I~V~g------~~F~~HK~vLas~S~YFr~lf~~---~~~e~~~~~v~L~-~~pGG~~~felll~FcYt~~i~It~~N 126 (621)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. ...+...-.|..+ |+ .+|+-+++|+++....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666643 68999999999999999999954 2222122333333 54 599999999999999999999
Q ss_pred hhhHHHhhcccCcccccccccHHHHHHHHHHHHh
Q 007015 127 IAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 127 V~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l 160 (621)
|+.++-.|+||||++ |++.|-.|+...+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999998 9999999998766
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.70 E-value=0.00074 Score=58.85 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=61.4
Q ss_pred EEEEEcCeEEeecccccc-cccHHHHHhhcCC---CCCCCcccEEecCCCCCHHHHHHHHHhhcC-CCeeec-CCchhhH
Q 007015 57 LSIQVQDVTFTVHKYPLM-SKCGYIARLELQP---SISNLGYDLKLENFPGGSETFEIILKFCYG-LPIAFN-PNNIAPL 130 (621)
Q Consensus 57 V~I~V~g~~F~~HK~vLa-s~S~YFr~lf~~~---~~e~~~~~v~L~~~pGG~~~felll~FcYt-~~i~It-~~NV~~L 130 (621)
|+|.|||+.|.+-+..|. -...+|.+|+... ........+-| |=+ |+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRD--PELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccC--hhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999864 11113345554 446 9999999999999 788774 6778999
Q ss_pred HHhhcccCccc
Q 007015 131 RCASEFLDMSE 141 (621)
Q Consensus 131 ~~AA~~LqM~e 141 (621)
+..|+|+++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999987
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.68 E-value=0.0022 Score=57.28 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=61.1
Q ss_pred EEEEE-cCeEEeecccccccccHHHHHhhcCCCCC-CCcccEEecCCCCCHHHHHHHHHhhcCCC-----------e---
Q 007015 57 LSIQV-QDVTFTVHKYPLMSKCGYIARLELQPSIS-NLGYDLKLENFPGGSETFEIILKFCYGLP-----------I--- 120 (621)
Q Consensus 57 V~I~V-~g~~F~~HK~vLas~S~YFr~lf~~~~~e-~~~~~v~L~~~pGG~~~felll~FcYt~~-----------i--- 120 (621)
|++.- +|..|.+.+.+. ..|+-++.|+...... .....|.|++|+ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45544 689999999865 6899999999864322 122579999999 999999999998421 0
Q ss_pred -----eecCCchhhHHHhhcccCc
Q 007015 121 -----AFNPNNIAPLRCASEFLDM 139 (621)
Q Consensus 121 -----~It~~NV~~L~~AA~~LqM 139 (621)
.+..+++.+|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1556678999999999985
No 17
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=96.52 E-value=0.0005 Score=59.89 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=48.4
Q ss_pred hhchHHHHHHhhhhHhhHHHHHHHhcccC-ccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 007015 174 CKNLSPWAENLQIVRRCCDSIAWKASREN-STTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 252 (621)
Q Consensus 174 C~~l~~~Ae~~~iv~rCidsLa~ka~~~~-~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Ya 252 (621)
|.+++.+|+.|++ ..|..++.... .+|..+. ..++|..||.+.+..+++.......+|..|+++++.|+
T Consensus 1 C~~i~~~A~~~~~-----~~L~~~~~~~i~~nf~~v~-----~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~ 70 (103)
T PF07707_consen 1 CLSIYRLAEKYGL-----EELAEACLRFIAKNFNEVS-----KSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWL 70 (103)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHHHHHHTHHHHT-----TSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHH
T ss_pred ChhHHHHHHHcCh-----HHHHHHHHHHHHHHHHHHc-----cchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence 7888999999985 44444433322 1232222 25799999999999999765444458889999999999
Q ss_pred HHh
Q 007015 253 KKW 255 (621)
Q Consensus 253 k~~ 255 (621)
++.
T Consensus 71 ~~~ 73 (103)
T PF07707_consen 71 KHN 73 (103)
T ss_dssp HCT
T ss_pred HhC
Confidence 754
No 18
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.45 E-value=0.011 Score=60.58 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=76.9
Q ss_pred EEEEEcCeEEeecccccccccHHHHHhhcCCCCC-CCcccEEecCCCCCHHHHHHHHHhhcCCCeee--cCCchhhHHHh
Q 007015 57 LSIQVQDVTFTVHKYPLMSKCGYIARLELQPSIS-NLGYDLKLENFPGGSETFEIILKFCYGLPIAF--NPNNIAPLRCA 133 (621)
Q Consensus 57 V~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e-~~~~~v~L~~~pGG~~~felll~FcYt~~i~I--t~~NV~~L~~A 133 (621)
|.+.|||..|.-+|..|--..|||+.|+.....- .+...-.+-|=+ |.=|++|++|+=.|.+.| +..++.+|+.=
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRS--PKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCC--hhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 4588999999999999999999999999987531 122222333445 899999999999887776 44567799999
Q ss_pred hcccCcccccccccHHHHHHHHHHHHh
Q 007015 134 SEFLDMSEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 134 A~~LqM~e~~~~~NL~~~ce~FL~~~l 160 (621)
|+|..+++ |++.|+.=+....
T Consensus 85 A~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 85 AEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHhhHHH------HHHHHHHHhhhcc
Confidence 99999998 9999998777653
No 19
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.85 E-value=0.0064 Score=63.14 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=56.5
Q ss_pred CCCeeEEEEEcCeEEeecccccccccHHHHHhhcCCCCCC--CcccEEecCCCCCHHHHHHHHHhhcCCCeee
Q 007015 52 QIPTDLSIQVQDVTFTVHKYPLMSKCGYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIAF 122 (621)
Q Consensus 52 ~~~~DV~I~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~--~~~~v~L~~~pGG~~~felll~FcYt~~i~I 122 (621)
....||-|......|++||+.|+++|++|+-+...+.... .-..+..-+|. -++|+..+.+.|+|+.-.
T Consensus 128 k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgm 198 (401)
T KOG2838|consen 128 KVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGM 198 (401)
T ss_pred eeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccch
Confidence 4667999999999999999999999999999877654332 22456777888 999999999999997643
No 20
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.20 E-value=0.023 Score=48.72 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=46.7
Q ss_pred hhchHHHHHHhhhhHhhHHHHHHHhcccC-ccchhhhcccccchhcccccCHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 007015 174 CKNLSPWAENLQIVRRCCDSIAWKASREN-STTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 252 (621)
Q Consensus 174 C~~l~~~Ae~~~iv~rCidsLa~ka~~~~-~~~~~l~~~~dwW~eDl~~Ls~d~~~rlI~am~~~~~~ee~I~~al~~Ya 252 (621)
|.++..+|+.|++ ..|...+.... .+|..+.+ .++|..||.+.+..+|.........|..++++++.|+
T Consensus 1 c~~i~~~a~~~~~-----~~L~~~~~~~i~~nf~~~~~-----~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~ 70 (101)
T smart00875 1 CLGIRRFAELYGL-----EELLEKALRFILKNFLEVAQ-----SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWV 70 (101)
T ss_pred CHhHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHhc-----CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 5667777777764 22322221111 12222222 3799999999999999776655557899999999999
Q ss_pred HHh
Q 007015 253 KKW 255 (621)
Q Consensus 253 k~~ 255 (621)
++.
T Consensus 71 ~~~ 73 (101)
T smart00875 71 KHD 73 (101)
T ss_pred HCC
Confidence 643
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.16 E-value=0.053 Score=48.47 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=60.0
Q ss_pred cCeEEeecccccccccHHHHHhhcCCCCC--CCcccEEecCCCCCHHHHHHHHHhh-----cCC------CeeecCCchh
Q 007015 62 QDVTFTVHKYPLMSKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFC-----YGL------PIAFNPNNIA 128 (621)
Q Consensus 62 ~g~~F~~HK~vLas~S~YFr~lf~~~~~e--~~~~~v~L~~~pGG~~~felll~Fc-----Yt~------~i~It~~NV~ 128 (621)
+|++|-+-|- .|.-||-+|+|+.+.... ....+|.+.+|| +..++.+..|. |++ +++|-++-+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5789988665 678899999999965432 345689999999 99999998875 554 4678888899
Q ss_pred hHHHhhcccC
Q 007015 129 PLRCASEFLD 138 (621)
Q Consensus 129 ~L~~AA~~Lq 138 (621)
+|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999996
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.28 E-value=0.12 Score=42.05 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=43.2
Q ss_pred EEEEE-cCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhc
Q 007015 57 LSIQV-QDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY 116 (621)
Q Consensus 57 V~I~V-~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcY 116 (621)
|+|.- +|+.|.+.+.+. -.|+.++.|+.....+ .. .|.|++|+ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~-~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDE-DE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCC-GT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccc-cc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 679999988754 6899999999864433 22 69999999 999999999997
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.083 Score=51.53 Aligned_cols=91 Identities=15% Similarity=0.234 Sum_probs=70.8
Q ss_pred EcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCe--------------------
Q 007015 61 VQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPI-------------------- 120 (621)
Q Consensus 61 V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i-------------------- 120 (621)
-+|+.|.+-.. .|-.|.-++.++.+..-......|-|++|. +.+|..|+.|||--+-
T Consensus 12 sDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~W 88 (162)
T KOG1724|consen 12 SDGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEW 88 (162)
T ss_pred cCCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHH
Confidence 36889998766 457789999988764322122468899999 9999999999997331
Q ss_pred -----eecCCchhhHHHhhcccCcccccccccHHHHHHHHHHHHh
Q 007015 121 -----AFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 121 -----~It~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l 160 (621)
.+...++.+|.-||.||+|+. |+..||...-..+
T Consensus 89 D~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 89 DAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 234457899999999999997 9999999888876
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.78 E-value=0.21 Score=52.20 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=40.5
Q ss_pred EEeecccccccccHHHHHhhcCCCCC---------CCcccEEecC-CCCCHHHHH-HHHHhhcCCCeeecC
Q 007015 65 TFTVHKYPLMSKCGYIARLELQPSIS---------NLGYDLKLEN-FPGGSETFE-IILKFCYGLPIAFNP 124 (621)
Q Consensus 65 ~F~~HK~vLas~S~YFr~lf~~~~~e---------~~~~~v~L~~-~pGG~~~fe-lll~FcYt~~i~It~ 124 (621)
++.|||.+.+++|++||.++....++ ....+|.+.. |= |.+|. .++.|+||-.+.++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~--PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF--PKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc--chhhhhhhhhhheecccchhh
Confidence 47899999999999999987643222 1234576654 22 45665 457899999888764
No 25
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=86.91 E-value=0.73 Score=50.31 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred eEEeecccccccccHHHHHhhcCCCCCCC-cc---cEEecCCCCCHHHHHHHHHhhcCCCeeecCCchhhHHHhhcccCc
Q 007015 64 VTFTVHKYPLMSKCGYIARLELQPSISNL-GY---DLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDM 139 (621)
Q Consensus 64 ~~F~~HK~vLas~S~YFr~lf~~~~~e~~-~~---~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~~L~~AA~~LqM 139 (621)
..+|||.+++ ++..||+.||+++..++. +. ...|+.+. ....|.+++|.|+-+-+|-++=...++--|+.|-.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999987 678999999999776632 22 23445555 78899999999999999999988888888888876
Q ss_pred cc
Q 007015 140 SE 141 (621)
Q Consensus 140 ~e 141 (621)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 26
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=82.50 E-value=15 Score=39.43 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=67.2
Q ss_pred hccCCCeeEEEEEcCeEEeecccccccccH-HHHHhhcCCCC---CCCcccEEe-cCCCCCHHHHHHHHHhhcCCCeeec
Q 007015 49 VTSQIPTDLSIQVQDVTFTVHKYPLMSKCG-YIARLELQPSI---SNLGYDLKL-ENFPGGSETFEIILKFCYGLPIAFN 123 (621)
Q Consensus 49 r~~~~~~DV~I~V~g~~F~~HK~vLas~S~-YFr~lf~~~~~---e~~~~~v~L-~~~pGG~~~felll~FcYt~~i~It 123 (621)
+..|..--++..|++..|-.-+++|-+.-. -+-.||..+.. ..+..+.++ .|+. ...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~--s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMT--SSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchh--HHHHHHHHHHHhcCceeCC
Confidence 556666678999999999999999877632 34456654321 112345555 4565 9999999999999988764
Q ss_pred C-CchhhHHHhhcccCcccc
Q 007015 124 P-NNIAPLRCASEFLDMSEE 142 (621)
Q Consensus 124 ~-~NV~~L~~AA~~LqM~e~ 142 (621)
+ -.|-+|+.|.+||-++-+
T Consensus 168 ~~vSvpELrEACDYLlipF~ 187 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFN 187 (438)
T ss_pred CCCchHHHHhhcceEEeecc
Confidence 3 568899999999988754
No 27
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.08 E-value=2 Score=44.86 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=69.9
Q ss_pred CeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCchh---hHHHhhcccCc
Q 007015 63 DVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIA---PLRCASEFLDM 139 (621)
Q Consensus 63 g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~---~L~~AA~~LqM 139 (621)
+..+..|+.+++++|+-|+.|+.....+.....+.+.+.. ++.++.+..|.|...-.-+..++. .++++|.-.+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999998876544344455777776 899999999999976655666664 77777777666
Q ss_pred ccccccccHHHHHHHHHHHHh
Q 007015 140 SEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 140 ~e~~~~~NL~~~ce~FL~~~l 160 (621)
.. |...|...|...+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 65 8888999988765
No 28
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=78.98 E-value=5.4 Score=44.44 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=62.1
Q ss_pred EEEEEcCeEEeeccccccccc--HHHHHhhcCCCCCC-CcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCchhhHHH-
Q 007015 57 LSIQVQDVTFTVHKYPLMSKC--GYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRC- 132 (621)
Q Consensus 57 V~I~V~g~~F~~HK~vLas~S--~YFr~lf~~~~~e~-~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~~L~~- 132 (621)
|.+.|||+.|.--+.-|+... .+|-+|++...... ......+-|=+ |+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRD--PdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRD--PDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCC--chHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 568999999999999887765 69999997543321 22223333434 8999999999999999995544455555
Q ss_pred hhcccCccc
Q 007015 133 ASEFLDMSE 141 (621)
Q Consensus 133 AA~~LqM~e 141 (621)
=|.|.+++.
T Consensus 91 EA~fYGl~~ 99 (465)
T KOG2714|consen 91 EAMFYGLTP 99 (465)
T ss_pred hhhhcCcHH
Confidence 899999997
No 29
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=71.79 E-value=6.6 Score=34.06 Aligned_cols=31 Identities=19% Similarity=0.533 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007015 537 IKNLREELENVKTRMAELQKDYSELQREYEK 567 (621)
Q Consensus 537 ~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k 567 (621)
+...=.||+.||..|.+||..+..||+++|.
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445568999999999999999999988864
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=71.05 E-value=13 Score=38.32 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=66.3
Q ss_pred EEEEEcCeEEeeccccccccc--HHHHHhhcCCCCCC--CcccEEecCCCCCHHHHHHHHHhhcCCCee-ecCCchhhHH
Q 007015 57 LSIQVQDVTFTVHKYPLMSKC--GYIARLELQPSISN--LGYDLKLENFPGGSETFEIILKFCYGLPIA-FNPNNIAPLR 131 (621)
Q Consensus 57 V~I~V~g~~F~~HK~vLas~S--~YFr~lf~~~~~e~--~~~~v~L~~~pGG~~~felll~FcYt~~i~-It~~NV~~L~ 131 (621)
|.+.+||+.|.--...|.-+= .-+-+||....... ...-..|-|=+ |.-||-++.|.-.|.+. .+.-|+..++
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRs--p~yFepIlNyLr~Gq~~~~s~i~~lgvL 88 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRS--PKYFEPILNYLRDGQIPSLSDIDCLGVL 88 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccC--chhhHHHHHHHhcCceeecCCccHHHHH
Confidence 567899999998888787773 46788998743221 22223344444 78999999999998865 5778999999
Q ss_pred HhhcccCcccccccccHHHHHHH
Q 007015 132 CASEFLDMSEEYEDGNLISKTEA 154 (621)
Q Consensus 132 ~AA~~LqM~e~~~~~NL~~~ce~ 154 (621)
.+|.|+|+-. |++.-++
T Consensus 89 eeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 89 EEARFFQILS------LKDHLED 105 (302)
T ss_pred HHhhHHhhHh------HHhHHhh
Confidence 9999999986 5555444
No 31
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=69.05 E-value=42 Score=33.38 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=68.2
Q ss_pred EEEEEcCeEEeeccccccccc-HHHHHhhcCCCCC---CCcccEEecCCCCCHHHHHHHHHhhcCCCeeecCCchhhHHH
Q 007015 57 LSIQVQDVTFTVHKYPLMSKC-GYIARLELQPSIS---NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRC 132 (621)
Q Consensus 57 V~I~V~g~~F~~HK~vLas~S-~YFr~lf~~~~~e---~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~~NV~~L~~ 132 (621)
|-+.|||..|.--|.-|.--+ .|+.++....+.. ++..---|-|=+ |.-|.-+++|.--|++.++.---.-++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRD--P~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRD--PFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccC--cchHHHHHHHHhcchhhhhhhhhhccch
Confidence 567899999999999998887 5555665543321 122223344444 8899999999999999999966677888
Q ss_pred hhcccCcccccccccHHHHHHHHHHHH
Q 007015 133 ASEFLDMSEEYEDGNLISKTEAFLTLV 159 (621)
Q Consensus 133 AA~~LqM~e~~~~~NL~~~ce~FL~~~ 159 (621)
-|+|...+. |+....+-+.+.
T Consensus 101 EAefyn~~~------li~likd~i~dR 121 (210)
T KOG2715|consen 101 EAEFYNDPS------LIQLIKDRIQDR 121 (210)
T ss_pred hhhccCChH------HHHHHHHHHHHH
Confidence 999999886 555555544443
No 32
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=65.93 E-value=3.1 Score=35.43 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=27.5
Q ss_pred ecCCchhhHHHhhcccCcccccccccHHHHHHHHHHHHh
Q 007015 122 FNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 122 It~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l 160 (621)
++...+..|+.||.||+|.. |++.|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 35668999999999999997 9999999998876
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.51 E-value=28 Score=33.14 Aligned_cols=90 Identities=11% Similarity=0.201 Sum_probs=64.7
Q ss_pred EEcCeEEeecccccccccHHHHHhhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCCCeeecC---------------
Q 007015 60 QVQDVTFTVHKYPLMSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNP--------------- 124 (621)
Q Consensus 60 ~V~g~~F~~HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~~i~It~--------------- 124 (621)
-.+|+.|.+.+. .|-+|-.++.|+...... ...+.++++. +..|..+++||---+=.+++
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~--n~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~ 82 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTAC--NYPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDF 82 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhcccccc--CCCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccH
Confidence 357899999876 678899999988765432 2235566777 99999999999643222221
Q ss_pred ----------CchhhHHHhhcccCcccccccccHHHHHHHHHHHHh
Q 007015 125 ----------NNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI 160 (621)
Q Consensus 125 ----------~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l 160 (621)
.-..++.-||.||++.. |++.||.-..+.+
T Consensus 83 wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 83 WDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 23456778889999887 8888888887766
No 34
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.25 E-value=16 Score=30.03 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=27.1
Q ss_pred chHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 533 TSIEIKNLREELENVKTRMAELQKDYSELQRE 564 (621)
Q Consensus 533 ~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~ 564 (621)
.+.|.+.||..|..+..|+.+||.|+.-+|+-
T Consensus 12 VrEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 12 VREEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46688999999999999999999999888754
No 35
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=58.46 E-value=13 Score=25.01 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007015 543 ELENVKTRMAELQKDYSE 560 (621)
Q Consensus 543 el~~m~~rv~eLe~~~~~ 560 (621)
||++.|.|+.+||++...
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 789999999999988754
No 36
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=57.67 E-value=1.8 Score=47.35 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=47.6
Q ss_pred cchhhhccCC--CeeEEEEE-cCeEEeecccccccccHHHHH-hhcCCCCCCCcccEEecCCCCCHHHHHHHHHhhcCC
Q 007015 44 EHSWFVTSQI--PTDLSIQV-QDVTFTVHKYPLMSKCGYIAR-LELQPSISNLGYDLKLENFPGGSETFEIILKFCYGL 118 (621)
Q Consensus 44 ~~~w~r~~~~--~~DV~I~V-~g~~F~~HK~vLas~S~YFr~-lf~~~~~e~~~~~v~L~~~pGG~~~felll~FcYt~ 118 (621)
-++-++.+++ ..|++..+ +|..|.+||+.|+++|.||.. +..... .+-+|+-+.+- +.+|+..++|.|-.
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~---~~heI~~~~v~--~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV---QGHEIEAHRVI--LSAFSPFLKQLYLN 210 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc---ccCchhhhhhh--HhhhhHHHHHHHHh
Confidence 3556777776 33888766 578999999999999877654 322211 12234333344 79999999999965
No 37
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=53.37 E-value=7.2 Score=34.73 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=32.9
Q ss_pred cCCcccccchhhHHHHHHHHhhCCCCCHHHHHhhhcccccCCC
Q 007015 436 LPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKL 478 (621)
Q Consensus 436 lP~~aR~~~DgLYRAIDiYLK~Hp~lse~Er~~lCr~~dc~KL 478 (621)
+|++..-....+|+|+.+||.+.+..+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 4555556778999999999999987776 77888877776654
No 38
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=41.22 E-value=35 Score=33.87 Aligned_cols=55 Identities=24% Similarity=0.439 Sum_probs=32.9
Q ss_pred HHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhcccCc------------ccCcccchhhhhhhccC
Q 007015 536 EIKNLREE--LENVKTRMAELQKDYSELQREYEKLSNKHK------------IVSSWSLGWRKIKNSFH 590 (621)
Q Consensus 536 e~~~lk~e--l~~m~~rv~eLe~~~~~m~~~~~k~~~~~k------------~~~~~~~~w~~~~~~~~ 590 (621)
|+++|... ++.|+....+|-++|..|...++++..... ..-..-++|||.+|.|.
T Consensus 108 Eik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ 176 (201)
T KOG4603|consen 108 EIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFR 176 (201)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444 566777777777777777766666543111 11344678999888643
No 39
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.14 E-value=38 Score=36.78 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCCCchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007015 528 DTQPSTSIEIKNLREELENVKTRMAELQKDYS 559 (621)
Q Consensus 528 ~~~~~~~~e~~~lk~el~~m~~rv~eLe~~~~ 559 (621)
++-..++.||..||.|.+.+|.+|..||.+..
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778888888888888888888876654
No 40
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=37.61 E-value=24 Score=35.92 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=29.0
Q ss_pred HHHhcC--CcccccchhhHHHHHHHHhhCCCCCHHHHHh
Q 007015 432 LAESLP--ENARTCHDGLYRAIDTYLKSHPSLSEHDRRR 468 (621)
Q Consensus 432 Lae~lP--~~aR~~~DgLYRAIDiYLK~Hp~lse~Er~~ 468 (621)
+.+-+| +..+..-+|=|+||.-|||.||+=-|.++.+
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~~ 220 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTSR 220 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchhh
Confidence 344566 6666679999999999999999777776654
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.26 E-value=68 Score=31.53 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=17.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 534 SIEIKNLREELENVKTRMAELQKDYSELQR 563 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~rv~eLe~~~~~m~~ 563 (621)
..||+.|+.|+..++.++.+||++...+++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~ 132 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQ 132 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666655555543
No 42
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=35.93 E-value=50 Score=35.84 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 541 REELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 541 k~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
|.||+.+..|+.|||++...|+++++.+.+
T Consensus 288 RsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999988754
No 43
>PF15294 Leu_zip: Leucine zipper
Probab=34.44 E-value=67 Score=34.23 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=33.1
Q ss_pred CCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007015 531 PSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 569 (621)
Q Consensus 531 ~~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~ 569 (621)
..+..|+..|+.|.+++|.|+..+|++|..+-.|-.++.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~ 166 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLE 166 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999998866655553
No 44
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=32.68 E-value=27 Score=27.38 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007015 544 LENVKTRMAELQKDYSELQ 562 (621)
Q Consensus 544 l~~m~~rv~eLe~~~~~m~ 562 (621)
-+++|.||+|||.|...++
T Consensus 13 ~e~l~vrv~eLEeEV~~Lr 31 (48)
T PF14077_consen 13 QEQLRVRVSELEEEVRTLR 31 (48)
T ss_pred cchheeeHHHHHHHHHHHH
Confidence 4678899999999998775
No 45
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.60 E-value=67 Score=37.63 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=89.2
Q ss_pred hcchhhHHHHhhHHHHHhhhcCCCCCChhHHHHHHHhcCCcccccc--hhhHHHHHHHHhhCCCCCHHHHHhhhccc--c
Q 007015 399 QQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENARTCH--DGLYRAIDTYLKSHPSLSEHDRRRLCKLM--N 474 (621)
Q Consensus 399 ~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~aR~~~--DgLYRAIDiYLK~Hp~lse~Er~~lCr~~--d 474 (621)
|.+....|+|.-++.-| .-||..|++++=+.+-...+-+....| |.|=-|+..|+.--|.|..-||+-==-.| |
T Consensus 299 p~P~~V~KiAasf~A~l--y~P~~dLsveEK~~~~r~~~~~~~ddH~RDALAAA~kAY~~yk~kl~~vEr~~~~~g~~~d 376 (652)
T COG2433 299 PAPETVKKIAASFNAVL--YTPDRDLSVEEKQEALRTLKISVSDDHERDALAAAYKAYLAYKPKLEKVERKLPELGIWKD 376 (652)
T ss_pred CChHHHHHHHHHcCCcc--cCCcccCCHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 45667788888777666 468999999988888888888888877 89999999998877777666664311111 1
Q ss_pred c--------CCCCHHHhHHHhhCCCCCchhHHHHHHHHhhhhhhccccCCCCccCCCC------CCCCCCCCchHHHhHH
Q 007015 475 C--------EKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQETEPALQCDNS------EQGDTQPSTSIEIKNL 540 (621)
Q Consensus 475 c--------~KLS~eAc~HAaQNeRlPlr~vvQvLf~eQ~~lr~~~~~~~~~~~~~~~------~~~~~~~~~~~e~~~l 540 (621)
- .-.|..+|.--+.-++.|=- =.++ |-+.+ ....+ ........+..||+.|
T Consensus 377 ~~rika~VIrG~~l~eal~~~~e~~~p~e-~~~~----~~~e~----------~ei~~~~~~i~~~~~~ve~l~~e~~~L 441 (652)
T COG2433 377 VERIKALVIRGYPLAEALSKVKEEERPRE-KEGT----EEEER----------REITVYEKRIKKLEETVERLEEENSEL 441 (652)
T ss_pred HHHHHHHeecCCcHHHHHHHHHhhhcccc-cccc----ccccc----------cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223333222222222100 0000 00000 00000 0001123456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007015 541 REELENVKTRMAELQKDYSELQREYE 566 (621)
Q Consensus 541 k~el~~m~~rv~eLe~~~~~m~~~~~ 566 (621)
+.+++.|+..+.+|+.+|..++.+++
T Consensus 442 ~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 442 KRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888865554
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.58 E-value=1.2e+02 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007015 544 LENVKTRMAELQKDYSEL 561 (621)
Q Consensus 544 l~~m~~rv~eLe~~~~~m 561 (621)
.+.|+..+..|+.++..|
T Consensus 42 n~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 47
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=32.18 E-value=22 Score=38.33 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=29.1
Q ss_pred cccccccccHHHHHhhcCCCCCCCcccEEecC-CCCCHHHH
Q 007015 69 HKYPLMSKCGYIARLELQPSISNLGYDLKLEN-FPGGSETF 108 (621)
Q Consensus 69 HK~vLas~S~YFr~lf~~~~~e~~~~~v~L~~-~pGG~~~f 108 (621)
-|+++++.-.-|+.+|....++-..+.+.+++ ||||.|..
T Consensus 166 aKa~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~q 206 (415)
T COG3919 166 AKAFTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQ 206 (415)
T ss_pred hheeeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCccc
Confidence 46777777788888888766655566777765 89987654
No 48
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=31.78 E-value=33 Score=28.08 Aligned_cols=18 Identities=22% Similarity=0.656 Sum_probs=16.0
Q ss_pred hhHHHHHHHHhhCCCCCH
Q 007015 446 GLYRAIDTYLKSHPSLSE 463 (621)
Q Consensus 446 gLYRAIDiYLK~Hp~lse 463 (621)
-||.|+..||+.||+-..
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 599999999999998765
No 49
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=31.67 E-value=65 Score=34.99 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.9
Q ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007015 532 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKL 568 (621)
Q Consensus 532 ~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~ 568 (621)
.++.+|..|+.|++.+|.++.|++.+|..+++.+.+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 4567899999999999999999999999999887664
No 50
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=30.58 E-value=1.3e+02 Score=27.13 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=32.5
Q ss_pred chHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 533 TSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 533 ~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
+++..+=.+.|-+-||.+++|||.+-..|..|+.|...
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788999999999999999999999998854
No 51
>PHA01750 hypothetical protein
Probab=30.39 E-value=1e+02 Score=26.01 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 536 EIKNLREELENVKTRMAELQKDYSELQRE 564 (621)
Q Consensus 536 e~~~lk~el~~m~~rv~eLe~~~~~m~~~ 564 (621)
|...|+.|++..+.|.-+||++...+++.
T Consensus 43 ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 43 ELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44445555555555555555544444433
No 52
>PRK14127 cell division protein GpsB; Provisional
Probab=30.30 E-value=66 Score=29.63 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=18.4
Q ss_pred CCCchHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007015 530 QPSTSIEIKNLREELENVKTRMAELQKDYS 559 (621)
Q Consensus 530 ~~~~~~e~~~lk~el~~m~~rv~eLe~~~~ 559 (621)
+....+||..|+.++.+++.++.+++.+-.
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455666666666666666666666544
No 53
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=30.14 E-value=91 Score=29.95 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=21.5
Q ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007015 532 STSIEIKNLREELENVKTRMAELQKDYSELQREYE 566 (621)
Q Consensus 532 ~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~ 566 (621)
+++.|+..|-.+++.|+.||.|||.-++....-++
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556666666667777777777766666554443
No 54
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.88 E-value=1.1e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007015 539 NLREELENVKTRMAELQKDYSELQREYEKL 568 (621)
Q Consensus 539 ~lk~el~~m~~rv~eLe~~~~~m~~~~~k~ 568 (621)
.-|..++.|..+|.+|+.+...|++++..+
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888887765
No 55
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.57 E-value=1.1e+02 Score=30.62 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=33.2
Q ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 532 STSIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 532 ~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
....|...|..++.++..++.+|++.|+.|..||.-+.+
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446688999999999999999999999999877766653
No 56
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.35 E-value=91 Score=26.73 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007015 530 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYE 566 (621)
Q Consensus 530 ~~~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~ 566 (621)
...+..||-+||.+++.|+..+.++++......+.++
T Consensus 38 ~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 38 IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456778888999999998888888887776666554
No 57
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.10 E-value=1.4e+02 Score=24.67 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=26.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007015 534 SIEIKNLREELENVKTRMAELQKDYSELQREYEKL 568 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~ 568 (621)
..+...++.++..++.++.+|+.+-..++++++++
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677777778888888888888888888777
No 58
>smart00338 BRLZ basic region leucin zipper.
Probab=27.88 E-value=1.3e+02 Score=24.53 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 536 EIKNLREELENVKTRMAELQKDYSELQRE 564 (621)
Q Consensus 536 e~~~lk~el~~m~~rv~eLe~~~~~m~~~ 564 (621)
+.+.|..+.+.|+.++..|+.++..++++
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544443
No 59
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=27.64 E-value=78 Score=33.88 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007015 530 QPSTSIEIKNLREELENVKTRMAELQKDYSELQREYEKLS 569 (621)
Q Consensus 530 ~~~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~ 569 (621)
|..+..|.+.|...=+.+|.++.+||||..-||+-|.-.-
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888999999999999999998876543
No 60
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.98 E-value=1.7e+02 Score=26.86 Aligned_cols=53 Identities=15% Similarity=0.373 Sum_probs=32.9
Q ss_pred chhHHHHHHHHhhhhhhccccCCCCccCCCCCCCCCCCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 494 LRTVVQVLFSEQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIKNLREELENVKTRMAELQKDYSELQRE 564 (621)
Q Consensus 494 lr~vvQvLf~eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~ 564 (621)
++..+|=|+.-|-.|-..+. .+..+++.+..+.++++..+.+++.++..+|+|
T Consensus 64 aQl~ieYLl~~q~~L~~~~~------------------~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 64 AQLSIEYLLHCQEYLSSQLE------------------QLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778878877766544321 224455666666666666666666666666655
No 61
>PRK10722 hypothetical protein; Provisional
Probab=25.94 E-value=5.4e+02 Score=27.09 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=71.2
Q ss_pred CChhHHHHHHHhcCCcccccchhhHHHHHHHHhhCCCCCHHHHHhhhcccccCCCCHHHhHHHhhCCCCCchhHHHHHHH
Q 007015 424 LSITKFQVLAESLPENARTCHDGLYRAIDTYLKSHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFS 503 (621)
Q Consensus 424 L~~~kF~~Lae~lP~~aR~~~DgLYRAIDiYLK~Hp~lse~Er~~lCr~~dc~KLS~eAc~HAaQNeRlPlr~vvQvLf~ 503 (621)
|.+..-...|..+|+. ...+.+++|| |=+|+..|-.||..+=--+|...+..-+ +||-..|++-.
T Consensus 88 L~~~ear~ea~~~~~~--~w~~afkq~I---LL~~a~~t~~err~~l~rl~~~~~~~p~----------~lrPL~qlwr~ 152 (247)
T PRK10722 88 LMPAQARAQAKRLPDD--SWQNAFKQGI---LLADAKITPAERRQIVERLNAYSLQIPA----------QVRPLYQLWRD 152 (247)
T ss_pred cCHHHHHHHHHhcCCC--CHHHHHHHHH---HHcCCCCChHHHHHHHHHHhhcccccch----------hhhHHHHHHHH
Confidence 3444555666667743 4556677886 5578888899999988777766554332 57788888877
Q ss_pred HhhhhhhccccCCCCccCCCCCCCCCCCCchHHHh---HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007015 504 EQVKMRTAMQETEPALQCDNSEQGDTQPSTSIEIK---NL----REELENVKTRMAELQKDYSELQREYEKLS 569 (621)
Q Consensus 504 eQ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---~l----k~el~~m~~rv~eLe~~~~~m~~~~~k~~ 569 (621)
+|...=+. ..|.. .| -.+++++|....+||.+.....+.+|.++
T Consensus 153 ~Q~l~l~L----------------------aeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 153 GQALQLAL----------------------AEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred hhHHHHhH----------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77632111 11211 23 34688888888888888887776666664
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.16 E-value=1.7e+02 Score=28.27 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=22.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 534 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
..|...|..++..++.++.+|+.++..++.++..+.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345556666666666666666666666666555543
No 63
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=24.40 E-value=86 Score=35.40 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.2
Q ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHH
Q 007015 532 STSIEIKNLREELENVKTRMAELQKDY 558 (621)
Q Consensus 532 ~~~~e~~~lk~el~~m~~rv~eLe~~~ 558 (621)
+...+|++|+.+|..+|.+|.|||++.
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999999999764
No 64
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.69 E-value=1.3e+02 Score=29.76 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007015 535 IEIKNLREELENVKTRMAELQKDYSELQREYEKLS 569 (621)
Q Consensus 535 ~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~ 569 (621)
.++..++.|+++++..+.+-|++...||.|.+.+.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777777777776654
No 65
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.45 E-value=58 Score=37.34 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=22.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007015 536 EIKNLREELENVKTRMAELQKDYSELQREYEKLS 569 (621)
Q Consensus 536 e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~ 569 (621)
|...+| +|+.++.++.|||++...|+..++|..
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k~e 58 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDKVE 58 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccchhh
Confidence 445555 677777777777777777766666654
No 66
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.32 E-value=1.7e+02 Score=22.42 Aligned_cols=21 Identities=29% Similarity=0.597 Sum_probs=8.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHH
Q 007015 544 LENVKTR-MAELQKDYSELQRE 564 (621)
Q Consensus 544 l~~m~~r-v~eLe~~~~~m~~~ 564 (621)
+++||.. +.|+-+|...||++
T Consensus 5 le~~KqEIL~EvrkEl~K~K~E 26 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKEE 26 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333 23444444444444
No 67
>PRK15322 invasion protein OrgB; Provisional
Probab=22.13 E-value=2e+02 Score=29.41 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHHhhhhhhhh-h--hcchhhHHHHhhHHHHHhhhcCCC--------------------CCChhHHH
Q 007015 374 TMHNIDVVQRIMDYFLMHEQQQQQ-K--QQNMGKTNVSKILDNYLAEVARDP--------------------NLSITKFQ 430 (621)
Q Consensus 374 tlyDvd~V~riv~~Fl~~~~~~~~-~--~~~~~~~~VakLvD~YLaEiA~D~--------------------nL~~~kF~ 430 (621)
.+-++|...++++.|+..-..... + .-+..-+..+.=+-.||.|..+++ ..+|..|+
T Consensus 88 ~Ld~pd~LL~~le~Wl~~l~~~~~pL~l~lP~~ak~~~~~L~~~l~e~w~~~~~i~yhd~~rFV~~~g~qIaEFsPq~~v 167 (210)
T PRK15322 88 AVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKYHQEQRFIMSCGDQIAEFSPEQFV 167 (210)
T ss_pred HccCHHHHHHHHHHHHHhCccccCceeEecChhhhhhHHHHHHHHHHhcCCCeEEEEcCCCceEEEeCCchhccCHHHHH
Confidence 456788999999999986443221 0 112344556666777888866644 46899999
Q ss_pred HHHHh--------cCCcccccchhhHHHHHHHHhhC
Q 007015 431 VLAES--------LPENARTCHDGLYRAIDTYLKSH 458 (621)
Q Consensus 431 ~Lae~--------lP~~aR~~~DgLYRAIDiYLK~H 458 (621)
+.|+. +|.-+|...||=-.|.=-|||.|
T Consensus 168 ~~a~~~l~~~~d~~~~~~r~ls~~~l~al~~~~~~~ 203 (210)
T PRK15322 168 ETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTK 203 (210)
T ss_pred HHHHHHHHhCccchHHHHHHHhHHHHHHHHHHHHHh
Confidence 99986 55667777777666666667666
No 68
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=21.94 E-value=1.4e+02 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=9.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 007015 535 IEIKNLREELENVKTRMAELQ 555 (621)
Q Consensus 535 ~e~~~lk~el~~m~~rv~eLe 555 (621)
.||+.||..+.+|+..+..|.
T Consensus 18 ~e~~~Lk~kir~le~~l~~Lk 38 (236)
T PF12017_consen 18 IENKKLKKKIRRLEKELKKLK 38 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 69
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.93 E-value=57 Score=28.24 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHhhCC
Q 007015 445 DGLYRAIDTYLKSHP 459 (621)
Q Consensus 445 DgLYRAIDiYLK~Hp 459 (621)
=.||-||+-||..|-
T Consensus 31 PQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHK 45 (82)
T ss_pred hHHHHHHHHHHHHcc
Confidence 479999999999997
No 70
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.80 E-value=1.4e+02 Score=31.18 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCchHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 007015 530 QPSTSIEIKNLREELENVKTRMAEL---QKDYSELQRE 564 (621)
Q Consensus 530 ~~~~~~e~~~lk~el~~m~~rv~eL---e~~~~~m~~~ 564 (621)
...+..||+.||.|++.++.++.++ ++|-..+++.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778999999998888888855 4444444443
No 71
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.77 E-value=2.1e+02 Score=24.11 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 536 EIKNLREELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 536 e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
++..+..++++++.++.+++.+...++.|+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45667778888888888888888888888887764
No 72
>PLN03205 ATR interacting protein; Provisional
Probab=21.19 E-value=87 Score=35.21 Aligned_cols=30 Identities=30% Similarity=0.665 Sum_probs=26.8
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007015 534 SIEIKNLREELENVKTRMAELQKDYSELQR 563 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~rv~eLe~~~~~m~~ 563 (621)
.-|+..||.|++++..++.+.|.||+.+|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (652)
T PLN03205 133 DLEIDRLKKELERVSKQLLDVEQECSQLKK 162 (652)
T ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 347899999999999999999999998764
No 73
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=21.19 E-value=64 Score=39.22 Aligned_cols=67 Identities=28% Similarity=0.478 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHHhhhhhhhhhhcchhhHHHHhhHHHHHhhhcCCCCCChhHHHHHHHhcCCcc--cc-----cchhhHH
Q 007015 377 NIDVVQRIMDYFLMHEQQQQQKQQNMGKTNVSKILDNYLAEVARDPNLSITKFQVLAESLPENA--RT-----CHDGLYR 449 (621)
Q Consensus 377 Dvd~V~riv~~Fl~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~~kF~~Lae~lP~~a--R~-----~~DgLYR 449 (621)
+.+.+.-|+++|-..- + +|.|=.+..+|..+.+..|..+++++|.++ .. .+=|++.
T Consensus 260 ~~e~m~~Lv~~F~p~l----------------~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~ 322 (802)
T PF13764_consen 260 NEEKMDALVEHFKPYL----------------D-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQ 322 (802)
T ss_pred CHHHHHHHHHHHHHhc----------------C-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHH
Confidence 4567888999883211 1 566666777888899999999999999887 32 3445666
Q ss_pred -HHHHHHh-hCCCC
Q 007015 450 -AIDTYLK-SHPSL 461 (621)
Q Consensus 450 -AIDiYLK-~Hp~l 461 (621)
|++ ||. .+|.+
T Consensus 323 ~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 323 DAID-YLLKHFPSL 335 (802)
T ss_pred HHHH-HHHHhCccc
Confidence 888 655 56764
No 74
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.80 E-value=2.6e+02 Score=23.79 Aligned_cols=37 Identities=32% Similarity=0.397 Sum_probs=30.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007015 534 SIEIKNLREELENVKTRMAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~rv~eLe~~~~~m~~~~~k~~~ 570 (621)
...+..|+.|++.+|.+..+|..+-..++++.+++..
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4567888999999999988888888888888888753
No 75
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=20.11 E-value=2.1e+02 Score=27.82 Aligned_cols=37 Identities=35% Similarity=0.532 Sum_probs=24.9
Q ss_pred hHHHhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhhcc
Q 007015 534 SIEIKNLREELENVKTR------------MAELQKDYSELQREYEKLSN 570 (621)
Q Consensus 534 ~~e~~~lk~el~~m~~r------------v~eLe~~~~~m~~~~~k~~~ 570 (621)
.+|.+.||.|+..+|.. -..|++++..+..|++++.+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544 46788888888888888764
No 76
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=20.10 E-value=82 Score=35.39 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=60.1
Q ss_pred ecCCchhhHHHhhcccCcccccccccHHHHHHHHHHHHhhhhhhhHHHHhhhhhchHHHHHHh---hhhHhhHHHHHHHh
Q 007015 122 FNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENL---QIVRRCCDSIAWKA 198 (621)
Q Consensus 122 It~~NV~~L~~AA~~LqM~e~~~~~NL~~~ce~FL~~~l~~sw~~si~~L~~C~~l~~~Ae~~---~iv~rCidsLa~ka 198 (621)
+.-+||..++-||.++++++ |...|..|+...... +-.-.++..++.+- -+.+.|.-+...++
T Consensus 145 L~~~NvCmifdaA~ly~l~~------Lt~~C~mfmDrnA~~--------lL~~~sFn~LSk~sL~e~l~RDsFfApE~~I 210 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTD------LTDYCMMFMDRNADQ--------LLEDPSFNRLSKDSLKELLARDSFFAPELKI 210 (620)
T ss_pred HcccceeeeeeHHHHhcchH------HHHHHHHHHhcCHHh--------hhcCcchhhhhHHHHHHHHhhhcccchHHHH
Confidence 56799999999999999998 999999999864321 11111111111100 00111111111100
Q ss_pred cccCccchhhhc-----ccc--cchhcccccCHHHHHHHHHHHhhcCC-ChhhHHHHHH
Q 007015 199 SRENSTTEDIAN-----RQG--WWFDDVATLGIDHFMRIITTIKVKGT-KPEIIGKCIM 249 (621)
Q Consensus 199 ~~~~~~~~~l~~-----~~d--wW~eDl~~Ls~d~~~rlI~am~~~~~-~ee~I~~al~ 249 (621)
|-.+++ +.. --.-++..||+-.+..++...+..|+ +++.|..|+-
T Consensus 211 ------FlAv~~W~~~Nske~~k~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~ 263 (620)
T KOG4350|consen 211 ------FLAVRSWHQNNSKEASKVLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIE 263 (620)
T ss_pred ------HHHHHHHHhcCchhhHHHHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHH
Confidence 000110 000 00124566888888888888888885 8998888874
Done!