Query 007016
Match_columns 621
No_of_seqs 170 out of 230
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 17:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2432 Uncharacterized conser 100.0 5E-156 1E-160 1219.4 39.9 526 1-602 1-530 (565)
2 PF09794 Avl9: Transport prote 100.0 1.9E-41 4.1E-46 362.1 20.4 251 26-367 1-313 (379)
3 KOG3823 Uncharacterized conser 100.0 2.8E-27 6.1E-32 249.5 18.7 248 24-367 9-317 (630)
4 PF08616 SPA: Stabilization of 99.9 7.6E-25 1.6E-29 198.8 10.0 100 261-368 3-108 (113)
5 PF07792 Afi1: Docking domain 99.8 2E-20 4.4E-25 176.5 10.7 142 26-178 2-144 (145)
6 smart00799 DENN Domain found i 99.8 6.1E-18 1.3E-22 165.8 14.6 166 155-356 2-169 (183)
7 PF02141 DENN: DENN (AEX-3) do 99.6 3.8E-15 8.3E-20 145.6 11.5 165 153-352 1-168 (185)
8 PF09804 DUF2347: Uncharacteri 99.3 4.4E-10 9.6E-15 117.3 20.9 250 29-368 1-275 (280)
9 KOG3569 RAS signaling inhibito 99.1 4.9E-09 1.1E-13 110.7 20.1 252 18-354 6-263 (425)
10 KOG4704 Uncharacterized conser 98.3 1.2E-05 2.5E-10 84.5 15.4 266 26-367 3-290 (431)
11 KOG3570 MAPK-activating protei 98.1 1.2E-05 2.7E-10 92.1 9.0 81 270-355 306-386 (1588)
12 KOG1090 Predicted dual-specifi 97.1 0.0034 7.3E-08 73.9 12.0 182 136-356 85-268 (1732)
13 KOG2080 Uncharacterized conser 95.3 0.1 2.3E-06 61.0 10.8 288 17-346 61-391 (1295)
14 KOG2127 Calmodulin-binding pro 92.1 0.53 1.1E-05 57.0 9.0 76 271-354 33-108 (1020)
15 KOG2432 Uncharacterized conser 91.0 0.07 1.5E-06 58.8 0.2 63 535-597 213-280 (565)
16 smart00800 uDENN Domain always 90.1 1.4 3E-05 38.3 7.5 66 24-89 3-76 (89)
17 PF03456 uDENN: uDENN domain; 78.5 4.3 9.2E-05 33.0 4.8 49 40-89 2-52 (65)
18 PF03455 dDENN: dDENN domain; 61.0 7.8 0.00017 31.7 2.7 66 465-553 3-68 (68)
19 smart00801 dDENN Domain always 57.5 15 0.00033 30.0 3.9 67 466-553 3-69 (69)
20 PF03808 Glyco_tran_WecB: Glyc 36.6 54 0.0012 31.9 4.7 87 279-367 44-136 (172)
21 PF10906 DUF2697: Protein of u 34.3 38 0.00083 28.6 2.7 24 536-559 4-27 (68)
22 cd06533 Glyco_transf_WecG_TagA 25.6 1.7E+02 0.0036 28.4 6.0 79 283-366 46-133 (171)
23 PF06218 NPR2: Nitrogen permea 24.6 65 0.0014 36.3 3.3 42 26-67 5-48 (428)
24 PF15320 RAM: mRNA cap methyla 22.4 45 0.00098 29.0 1.2 15 319-333 10-24 (81)
25 COG4970 FimT Tfp pilus assembl 22.1 92 0.002 31.1 3.4 31 542-572 29-60 (181)
26 PF05347 Complex1_LYR: Complex 20.1 68 0.0015 25.1 1.7 40 533-573 3-42 (59)
No 1
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5e-156 Score=1219.38 Aligned_cols=526 Identities=40% Similarity=0.688 Sum_probs=479.8
Q ss_pred CCCCCCcccccccCCCC---ChhhhhhhheeEEEEEeeCCCCceeeeeCCCCC-CChhhhhhcccccCCCCccccCCCCc
Q 007016 1 MSRSPSFSVKSELSLKP---DPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSS 76 (621)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~Wv~~icvV~FDle~Gq~vE~~YP~~~-ls~~Ek~~Ia~laFPDs~~~~~n~~~ 76 (621)
|+|++++.|+.+++... ||++|++|+||||||+||+|+||++|+|||+++ ||++|+.||||+||||| ||+|
T Consensus 1 ~~re~~~~va~~~~~epd~e~w~~f~~WlHc~Cvv~FDLelGQalE~iYP~~~~ls~~E~~nicy~aFPDS-----Ns~~ 75 (565)
T KOG2432|consen 1 REREHQNVVATNSNSEPDAEDWDNFSQWLHCFCVVTFDLELGQALEVIYPPDFMLSDQEKINICYLAFPDS-----NSSC 75 (565)
T ss_pred CCCcccccccCCCCCCCCchhHHHHHHhheeeEEEEechhhcceeeeecCCccccccchheeeeEeecCCC-----Cccc
Confidence 79999999998887755 588899999999999999999999999999999 99999999999999999 6899
Q ss_pred cceeEEEEEeecCCCCCCCCCCCCcccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCCCccCcceee
Q 007016 77 IHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQK 156 (621)
Q Consensus 77 ~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~sv~RGy~QK 156 (621)
+|||+||||+|+..+...-.. .+++ |..+..|..|+||||||||++|++++|||+||
T Consensus 76 ~~Dt~F~fR~R~~~~~~~~~~----------------------~dkd-~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QK 132 (565)
T KOG2432|consen 76 MGDTKFHFRFRRTTRRDSLPG----------------------YDKD-PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQK 132 (565)
T ss_pred cccceEEEEEecccccccccc----------------------ccCC-CcccCCCCceeEEEEeeeeechhhhhhhhhhh
Confidence 999999999999754433110 1223 66788999999999999999999999999999
Q ss_pred EEEEEecCCchhhHHHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccceEEEEeCCCCCCCCCccCCccc
Q 007016 157 SLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSE 236 (621)
Q Consensus 157 SiVIlS~lPy~~lf~~lL~~v~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~ 236 (621)
||||+|++||+++|++++..++|.||+.|+.++|+||+.|+.||.|++|.++|||++|.+++++||+.+++|...+.
T Consensus 133 Svviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~--- 209 (565)
T KOG2432|consen 133 SVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARK--- 209 (565)
T ss_pred ceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccCCceeeecccceeeeeeccccccCcccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976541
Q ss_pred ccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCc
Q 007016 237 ESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDF 316 (621)
Q Consensus 237 ~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~ 316 (621)
+.+.. +...++.++++.+|++|||+++..+..|||+|||++|+||||+|+|++|++|||+|.++++||+||.||.|+
T Consensus 210 ~~~~e---~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~df 286 (565)
T KOG2432|consen 210 TGAVE---LRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDF 286 (565)
T ss_pred cceee---eccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCC
Confidence 11111 223467778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhCCCCeEEEcCCCCCCCcccccccccCCCCCCCCCCCccccc
Q 007016 317 RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQ 396 (621)
Q Consensus 317 RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (621)
||||||||++|++|++.. ..+|.+|||||||||.|+++|||||++||++++++++. ++
T Consensus 287 RPYFTIHDseF~e~tS~~--~sdP~~iLGVTNpFF~K~L~~wPHilrv~~~~~n~~~~--------------------~~ 344 (565)
T KOG2432|consen 287 RPYFTIHDSEFREYTSNV--DSDPLVILGVTNPFFRKALAHWPHILRVGDNQPNMQQQ--------------------QQ 344 (565)
T ss_pred CceeeeccHHHHHHHhcc--CCCCceEEecCCHHHHHHHhcCcceeeecCCCccccch--------------------hh
Confidence 999999999999999865 56699999999999999999999999999998764331 11
Q ss_pred cccccCCcchhhHhhhccCCCcccccccccchhhhcccCCCCChHHHHHHHhcCCCCCccchhhhhchHHHHHHHHHHHH
Q 007016 397 LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTT 476 (621)
Q Consensus 397 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~k~~~~~~y~~~~~~Dk~~lk~L~~~~~~~~~~e~~~~v~~~lLRRHF~eLT~ 476 (621)
.+ .+|.....-++++|+|+||+|||+++|||+++|||++|++++|++| |||++|||||+||||
T Consensus 345 k~-------------~~kl~~~~~~Lns~~gl~t~Ykp~lkkD~slikkll~g~~~krpee----vqs~ilrrhfLElt~ 407 (565)
T KOG2432|consen 345 KK-------------AKKLASANTTLNSKAGLYTKYKPYLKKDKSLIKKLLLGMKTKRPEE----VQSAILRRHFLELTQ 407 (565)
T ss_pred hh-------------hhhhhhhccccCCCccceeccccccCccHHHHHHHHHhcccCChHH----HHHHHHHHHHHHhcc
Confidence 11 1111111127899999999999999999999999999999999999 999999999999999
Q ss_pred HhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHH
Q 007016 477 NFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAA 556 (621)
Q Consensus 477 ~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~ 556 (621)
+||+||+|||+++||++++|||++||.+..|..||||.+||++|+ |||+++||||.||||||+|||||.|||..||+|
T Consensus 408 ~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp--~lt~r~kgdw~glyrrflrspnf~gwf~~rr~e 485 (565)
T KOG2432|consen 408 SFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGP--QLTSRLKGDWKGLYRRFLRSPNFRGWFGARRRE 485 (565)
T ss_pred ceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCc--cccccccCCcHHHHHHHccCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHhccCCceehhhHHHHHHHHHHHHHH
Q 007016 557 AEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQ 602 (621)
Q Consensus 557 ~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vd~~~~l~~~l~~e~~ 602 (621)
|+|+|++||++|+|.||+.+|+++|+|||+||||+|||++| +|..
T Consensus 486 ~~q~l~~l~l~al~~~dl~~w~~~~~eve~vd~~lklk~kl-l~~d 530 (565)
T KOG2432|consen 486 LQQTLQDLQLQALSVADLEHWAHDKQEVEIVDMILKLKQKL-LYGD 530 (565)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHhhcchHHHHHHHHHHHHHH-Hhhh
Confidence 99999999999999999999999999999999999999999 4443
No 2
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=100.00 E-value=1.9e-41 Score=362.05 Aligned_cols=251 Identities=25% Similarity=0.429 Sum_probs=206.5
Q ss_pred heeEEEEEeeCCCCceeeeeCCCC---C-CChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCCCCCCCCCc
Q 007016 26 VVAFCTIRFDLEQGQLIEDCYPPG---C-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSE 101 (621)
Q Consensus 26 v~~icvV~FDle~Gq~vE~~YP~~---~-ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~ 101 (621)
|+|||||+|||++||+||++|||+ . ..++||.+|||+|||||+ |+|++|++| |+++...
T Consensus 1 i~~i~vV~Fhh~~G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~-----h~~~ed~~y-F~l~~~~----------- 63 (379)
T PF09794_consen 1 ILCICVVGFHHERGPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGA-----HNSEEDFSY-FTLPYDA----------- 63 (379)
T ss_pred CeEEEEEecccccCCeEEEEeCCCCCccccchhhHhhCCccccCCcc-----ccCCCceEE-EEeccCC-----------
Confidence 689999999999999999999953 3 678899999999999996 479999888 8988652
Q ss_pred ccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeec-------CCCccCcceeeEEEEEecCCchhhHHHHH
Q 007016 102 ITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRH-------DERLKRGGEQKSLVILSHGPFSSVFRPLL 174 (621)
Q Consensus 102 ~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~k-------D~sv~RGy~QKSiVIlS~lPy~~lf~~lL 174 (621)
....+..++||++||||++ |++++|||+||||||||++||+++|+..|
T Consensus 64 -------------------------~~~~~~~~lfGisc~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL 118 (379)
T PF09794_consen 64 -------------------------SLNRDATTLFGISCFRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKL 118 (379)
T ss_pred -------------------------CCCCCCceeeceeeHhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHH
Confidence 1234578999999999965 89999999999999999999999999999
Q ss_pred HHhccccccccH----HHHHHHHHHhccCCCCCCCCceeecccceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCC
Q 007016 175 QIMGPLYFDVGK----KAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQ 250 (621)
Q Consensus 175 ~~v~p~yF~~g~----~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 250 (621)
++++++||+++. .+|+.++++|++|.....++.+ .+
T Consensus 119 ~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~~~---------------------------~~------------- 158 (379)
T PF09794_consen 119 SIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGESL---------------------------QE------------- 158 (379)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccccccc---------------------------cc-------------
Confidence 999999999884 8999999999998766544311 00
Q ss_pred CCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCC----cC-------------
Q 007016 251 SIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL----CS------------- 313 (621)
Q Consensus 251 ~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~----y~------------- 313 (621)
...|.++++-..+..+-+++++||+|+|++++|||+|++++.+|++++||+|||..+- .|
T Consensus 159 ---~~~y~glslr~lv~~fr~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~ 235 (379)
T PF09794_consen 159 ---SDLYVGLSLRELVHNFRHKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWP 235 (379)
T ss_pred ---hhhhcCCCHHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccc
Confidence 0123345555566666788999999999999999999999999999999999998763 11
Q ss_pred -----------------------------CCccccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhCC-CCeEEE
Q 007016 314 -----------------------------IDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRK-IPHIVS 363 (621)
Q Consensus 314 -----------------------------gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~-WPhil~ 363 (621)
+-|-||++++--|. +++ ....++++|+||..|.+.-+. -+.||+
T Consensus 236 ~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQqld~--L~~----~~~~s~lvGtTN~Lf~qqk~~~~DvlVd 309 (379)
T PF09794_consen 236 LSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQQLDL--LSD----PNTKSYLVGTTNSLFLQQKDLYADVLVD 309 (379)
T ss_pred cCCCcccccCcccchHHHcCCCeeecCCCceecCcccHHHHHH--hhc----cCccEEEEeeChHHHHhCcccccCEEEE
Confidence 23788998886543 221 356789999999999998877 888899
Q ss_pred cCCC
Q 007016 364 VGSP 367 (621)
Q Consensus 364 l~~~ 367 (621)
+.+.
T Consensus 310 ld~~ 313 (379)
T PF09794_consen 310 LDTG 313 (379)
T ss_pred ecCC
Confidence 8753
No 3
>KOG3823 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.8e-27 Score=249.49 Aligned_cols=248 Identities=20% Similarity=0.292 Sum_probs=193.9
Q ss_pred hhheeEEEEEeeCCCCceeeeeCC--CCCCChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCCCCCCCCCc
Q 007016 24 RWVVAFCTIRFDLEQGQLIEDCYP--PGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSE 101 (621)
Q Consensus 24 ~Wv~~icvV~FDle~Gq~vE~~YP--~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~ 101 (621)
..+.|++||.|||.+||.||+.|| ...-.+++|.+|+|+|+||++| +..+|++| |+++...
T Consensus 9 ~~~KOG~~vgFHHkrGpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsH-----sfeedfvy-FtLp~~~----------- 71 (630)
T KOG3823|consen 9 PPILCLLVVGFHHKRGPEIEFSHPSPERNECPSGWKYLPFLALPDGSH-----SFEEDFVY-FTLPSLY----------- 71 (630)
T ss_pred CceEEEEeeecccccCCceeeecCCCCcCcCccccccCcceecCCCcc-----ccccceEE-Eeccccc-----------
Confidence 356899999999999999999996 3346788999999999999985 46778777 7876531
Q ss_pred ccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeee-------cCCCccCcceeeEEEEEecCCchhhHHHHH
Q 007016 102 ITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQR-------HDERLKRGGEQKSLVILSHGPFSSVFRPLL 174 (621)
Q Consensus 102 ~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~-------kD~sv~RGy~QKSiVIlS~lPy~~lf~~lL 174 (621)
...|.+.+||.+|+||. ||++|+|+.+|||||||+|+|.++..+..|
T Consensus 72 --------------------------~PnDegtifgvSC~RQi~~~~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL 125 (630)
T KOG3823|consen 72 --------------------------EPNDEGTIFGVSCYRQIRVEKLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKL 125 (630)
T ss_pred --------------------------CCCCCccEEEEEeehhhhhhhhcccccccchhhhheeEEEEEcCCccceehhhh
Confidence 12346799999999995 789999999999999999999999999999
Q ss_pred HHhcccccccc----HHHHHHHHHHhccCCCCCCCCceeecccceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCC
Q 007016 175 QIMGPLYFDVG----KKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQ 250 (621)
Q Consensus 175 ~~v~p~yF~~g----~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 250 (621)
.+|+.+||+.| ..+|..+|++++.+-.|.-.. -
T Consensus 126 ~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R--------------~----------------------------- 162 (630)
T KOG3823|consen 126 AIVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSR--------------R----------------------------- 162 (630)
T ss_pred HHhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhc--------------c-----------------------------
Confidence 99999999876 589999999999864332000 0
Q ss_pred CCCCccccccchhhhhHhh----hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCC---------------
Q 007016 251 SIPQGLFHDSDLFGTFRGL----LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL--------------- 311 (621)
Q Consensus 251 ~~P~~~~~~~~lf~~f~~~----l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~--------------- 311 (621)
|.-.+| |-| .+++.+ -++..+|.+++|++++|||+|.+..+.|+..++|+|||.-+.
T Consensus 163 --~e~~~h-IgL-~nLr~il~~wr~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP~~Ms~lqDs~sp~a~~~e 238 (630)
T KOG3823|consen 163 --PERHFH-IGL-SNLREILLHWRHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIPSPMSDLQDSLSPEAQEAE 238 (630)
T ss_pred --hhhhee-ehH-HHHHHHHHHHHHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcCCcchhhhcccChhHHHHH
Confidence 001111 111 144443 466899999999999999999999999999999999996440
Q ss_pred -------------------c----------CCCccccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhCCCCeEE
Q 007016 312 -------------------C----------SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIV 362 (621)
Q Consensus 312 -------------------y----------~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil 362 (621)
| ++-|-||...+-- ++. .....-.+++|+||-.|...-+--.||+
T Consensus 239 ~~L~~vaS~~~sd~~slla~~GfPl~IF~~G~lfsPYtpLq~m---~~l---~~~~~ls~~iGtsNtL~~~~~~~~~~~v 312 (630)
T KOG3823|consen 239 AELEAVASVAASDEQSLLASAGFPLSIFASGNLFSPYTPLQYM---DLL---SDPMVLSYVIGTSNTLFQQKRQLADVLV 312 (630)
T ss_pred HhhccchhhhcccHHHHHHhcCCceeeeccCcccCCCCchHHH---hhh---cccceeEeeecCchHHHHHhhhhccEEE
Confidence 1 2347888876642 222 1234567999999999999999999998
Q ss_pred EcCCC
Q 007016 363 SVGSP 367 (621)
Q Consensus 363 ~l~~~ 367 (621)
-+.+.
T Consensus 313 v~~dt 317 (630)
T KOG3823|consen 313 VIEDT 317 (630)
T ss_pred EecCc
Confidence 87664
No 4
>PF08616 SPA: Stabilization of polarity axis
Probab=99.91 E-value=7.6e-25 Score=198.79 Aligned_cols=100 Identities=37% Similarity=0.615 Sum_probs=87.5
Q ss_pred chhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhH--HHHHHHHHHHhccC---CC-cCCCccccccccCccchhhhccC
Q 007016 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQ--CCEAVASLVSLIAP---LL-CSIDFRPYFTIHDPQFAHLNSLQ 334 (621)
Q Consensus 261 ~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~--~S~aV~aL~SLI~P---L~-y~gd~RPYfTIhD~~F~~~~~~~ 334 (621)
++++.++.+.+++|.|||++|++|||||+|++|+. ||++|+||++||+| +. |.+++|||+|||| ++++
T Consensus 3 ~l~~~~~~f~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~--~~~l---- 76 (113)
T PF08616_consen 3 SLLHLFQQFGPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISD--LDEL---- 76 (113)
T ss_pred cHHHHHHhhhhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechh--hhhh----
Confidence 35667778899999999999999999999999888 99999999999999 33 4588899999999 3333
Q ss_pred CCCCCCCeEEecchHHHHHhhCCCCeEEEcCCCC
Q 007016 335 EGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (621)
Q Consensus 335 ~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (621)
...|++|+|||||||+++.++|||++++++..
T Consensus 77 --~~~~~~I~GvtNP~F~~~~~~wD~~~~l~~~~ 108 (113)
T PF08616_consen 77 --KSCPGYIAGVTNPIFEKRLDWWDHLCDLDTGE 108 (113)
T ss_pred --ccCCCEEEEeCCHHHHhccccCCEEEEcCCCe
Confidence 35678999999999999999999999998753
No 5
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=99.83 E-value=2e-20 Score=176.47 Aligned_cols=142 Identities=21% Similarity=0.374 Sum_probs=96.8
Q ss_pred heeEEEEEeeCCCCceeeeeCCCCCCChhhhhhcccccCCCCccccCCCCccce-eEEEEEeecCCCCCCCCCCCCcccc
Q 007016 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHD-CIFFFRFQRHKNLPQGNVTPSEITE 104 (621)
Q Consensus 26 v~~icvV~FDle~Gq~vE~~YP~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~D-t~F~Frir~~~~~~~~~~~~~~~~~ 104 (621)
|++|++++||++.|+.|+|+||...-+.++..+||.+|+||++|. ..+| |+|+.+ +.......... +..
T Consensus 2 veyIL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelMLPDg~h~-----r~~DwTvFfL~-~~~~~~~~~~~-~~~--- 71 (145)
T PF07792_consen 2 VEYILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELMLPDGAHK-----RSEDWTVFFLN-RDKSTEEFQLF-KNK--- 71 (145)
T ss_pred eeEEEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhCCccccc-----ccCCEEEEEEc-cCCCCchhhhc-ccc---
Confidence 789999999999999999999998533237789999999999974 4568 555433 33221111100 000
Q ss_pred cccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCCCccCcceeeEEEEEecCCchhhHHHHHHHhc
Q 007016 105 INDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMG 178 (621)
Q Consensus 105 ~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~sv~RGy~QKSiVIlS~lPy~~lf~~lL~~v~ 178 (621)
.+...++...+.+..+.+.......+...+|+++++|+++|++++||..+|||+|||++||+.+|+++|.++.
T Consensus 72 -~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~laL 144 (145)
T PF07792_consen 72 -KSPSNSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTKHDKTVRRGAVVKAMAICTRHPFFHIFKPLLLLAL 144 (145)
T ss_pred -ccccccccccccccccccccccccCCCCceEEEEeeccccCcccccccceeEEEEEcccHHHHHHhHHHHHhh
Confidence 0000000000000001112233445678999999999999999999999999999999999999999998764
No 6
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.76 E-value=6.1e-18 Score=165.82 Aligned_cols=166 Identities=21% Similarity=0.327 Sum_probs=135.2
Q ss_pred eeEEEEEecCCchhhHHHHHHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccceEEE--EeCCCCCCCCCccC
Q 007016 155 QKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLK--VNLPPAHSLPLESG 232 (621)
Q Consensus 155 QKSiVIlS~lPy~~lf~~lL~~v~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~--v~iP~~~~~p~~~~ 232 (621)
.|++||+||+||++.|+.+|..+...|+...+..+|.+++++. ||.|.||.++.+..+|.... +.-|..
T Consensus 2 p~~icilS~~P~~~~f~~~L~~l~~~~~~~~~~~~e~~~~~~~-~p~P~pg~~~~~~~~~~~~~~~~~~p~~-------- 72 (183)
T smart00799 2 PKCICILSRLPFFELFRKILNELYRLLPSSSNLPLELLISLLL-YPVPPPGGSLVLVSLGPGDLIELQRPLD-------- 72 (183)
T ss_pred CeEEEEEeCCcHHHHHHHHHHHHHHHHccCccchHHHHHHHhC-CCCCcCCCeEEEEEcCCCCcEEEECCCC--------
Confidence 4899999999999999999999999999877888898888886 89999999988876663222 122211
Q ss_pred CcccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCc
Q 007016 233 MLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLC 312 (621)
Q Consensus 233 ~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y 312 (621)
...|...++...+|++|. ..++..||+++|++++|+|+|.+++.+|.+|.|+.+||.|++|
T Consensus 73 -----------------~~lp~~~~~~~~lf~~l~--~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w 133 (183)
T smart00799 73 -----------------SSLPLIDFSLHELFECLG--VENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVW 133 (183)
T ss_pred -----------------CCCCCCCccHHHHHHhCC--HHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccC
Confidence 111333345556677764 7999999999999999999999999999999999999999999
Q ss_pred CCCccccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhC
Q 007016 313 SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALR 356 (621)
Q Consensus 313 ~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~ 356 (621)
.+.|.|....+.. ++. ++|.++|+||++.++.+.-+
T Consensus 134 ~~~~iP~lp~~l~---~~l-----~aP~P~iiGv~~~~~~~~~~ 169 (183)
T smart00799 134 QHIYIPILPASLL---DVL-----SAPTPFIIGVHSSYFEEVKE 169 (183)
T ss_pred CceEEEECCHHHH---HHh-----cCCCCEEEEechhHhHHhhc
Confidence 9999997776544 444 47899999999999987654
No 7
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=99.60 E-value=3.8e-15 Score=145.61 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=105.3
Q ss_pred ceeeEEEEEecCCchhhHHHHHHHhccccccccHHHHHHHHHH-hccCCCCCCCCceeecc--cceEEEEeCCCCCCCCC
Q 007016 153 GEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASY-VSIWPSPVPGKLMELPI--GNAMLKVNLPPAHSLPL 229 (621)
Q Consensus 153 y~QKSiVIlS~lPy~~lf~~lL~~v~p~yF~~g~~~LE~a~~~-I~~WP~p~pg~~l~Lp~--lg~vl~v~iP~~~~~p~ 229 (621)
|++|++|++||+||+.+|+.+|+.+...+.+.....+|..+.+ +.+.|.|.+|++..... .+..+.+..|...+.
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~l-- 78 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRINPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDL-- 78 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHS----TT-B--------------B---SSS---
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCC--
Confidence 7899999999999999999999999999998877888888888 78899999999888744 233333434432111
Q ss_pred ccCCcccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccC
Q 007016 230 ESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAP 309 (621)
Q Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~P 309 (621)
|...+.-..+|++|. ..++..+|+++|++++|+|+|.+++..|.+|.|+.+||.|
T Consensus 79 -----------------------p~~~~~~~~lf~~l~--~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~P 133 (185)
T PF02141_consen 79 -----------------------PLSDFSLSPLFSCLS--IDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYP 133 (185)
T ss_dssp -------------------------TSHHHHHHHHHS---HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTT
T ss_pred -----------------------CccccchhHHHhcCC--HHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccC
Confidence 221122223444442 6899999999999999999999999999999999999999
Q ss_pred CCcCCCccccccccCccchhhhccCCCCCCCCeEEecchHHHH
Q 007016 310 LLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFL 352 (621)
Q Consensus 310 L~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~ 352 (621)
+.+.+.|.|+.+.+-.++ . ++|.|+|+||+..++.
T Consensus 134 f~w~~~~ip~LP~~l~~~---l-----~aP~P~iiGv~~~~~~ 168 (185)
T PF02141_consen 134 FQWQHVYIPVLPPSLLDY---L-----EAPTPFIIGVHSSFFE 168 (185)
T ss_dssp S---SEEESS--GGGGGG---G-----G-SS-EEEEEECCCHH
T ss_pred cccCceEEeecCHHHHhh---c-----CCCCCEEEEEechhhh
Confidence 999999999998765544 3 3788999999998887
No 8
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=99.26 E-value=4.4e-10 Score=117.26 Aligned_cols=250 Identities=20% Similarity=0.287 Sum_probs=162.8
Q ss_pred EEEEEeeCCCCceeeeeCC-CCCCChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCCCCCCCCCccccccc
Q 007016 29 FCTIRFDLEQGQLIEDCYP-PGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEIND 107 (621)
Q Consensus 29 icvV~FDle~Gq~vE~~YP-~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~ 107 (621)
+.+|+||...|..|+.++| ++. +..+|=|-|+|-|.| ...+|++| |+ +
T Consensus 1 lFl~~FD~k~Gn~i~W~~~~~~i----~L~gVEfKsLPSGlH-----~v~~D~Vy-F~--~------------------- 49 (280)
T PF09804_consen 1 LFLVKFDVKKGNTIVWSRPAPDI----DLEGVEFKSLPSGLH-----EVDEDVVY-FV--H------------------- 49 (280)
T ss_pred CEEEEecCCCCcEEEEeccCCCC----ccCCeeEecCCcccc-----cccccEEE-Ee--c-------------------
Confidence 4689999999999999999 554 334678899999986 36788888 66 1
Q ss_pred ccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCC-CccCcceeeEEEEEecCCch-----hhHHHHHHHhcccc
Q 007016 108 KITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDE-RLKRGGEQKSLVILSHGPFS-----SVFRPLLQIMGPLY 181 (621)
Q Consensus 108 ~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~-sv~RGy~QKSiVIlS~lPy~-----~lf~~lL~~v~p~y 181 (621)
+.+||.++|||.+.. .-.||..-+||=||+..|+- .-|...|+.++..+
T Consensus 50 -------------------------~~~~Gls~F~~~~~~~~~~r~arM~SvGVL~~~~~~~~~~~w~h~~~L~~l~~~~ 104 (280)
T PF09804_consen 50 -------------------------DGYYGLSCFRQNPADEEEERGARMYSVGVLVPPPNGFYGRLWRHAEFLEELARHL 104 (280)
T ss_pred -------------------------CCEEEEEEEEeCCCCcccccCcEEEEEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 267999999999877 89999999999999887432 33555666666665
Q ss_pred cccc--HHHHHHHHHHhcc-----CCCCCCCCceeecccceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCCCC
Q 007016 182 FDVG--KKAIEHIASYVSI-----WPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQ 254 (621)
Q Consensus 182 F~~g--~~~LE~a~~~I~~-----WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~ 254 (621)
...+ ...||+.++.-.. |..|..+. .. ... ..+......+. .+.
T Consensus 105 ~~~~~~~~~le~~~e~~~~~~~~~~~~~~~~~----------------~~---~~~----~~~~~~~~~~~------~~~ 155 (280)
T PF09804_consen 105 LKDPGDYSPLEAYWEKNKADENSSSSSPPDSH----------------SR---NRS----LSDATALIPPD------PPL 155 (280)
T ss_pred HhCCCcchHHHHHHHHhcccccccccCCcccc----------------cc---ccc----cccccccCCCc------cCC
Confidence 5433 3678887655432 22221000 00 000 00000000000 011
Q ss_pred ccccccc-hhhhhHhhhHHHHHHHHHHHhCCcEEEECCCh-hHHHHHHHHHHHhccCCCcCC---------Ccccccccc
Q 007016 255 GLFHDSD-LFGTFRGLLLQLWVLWELLLIGEPILVIAPTP-PQCCEAVASLVSLIAPLLCSI---------DFRPYFTIH 323 (621)
Q Consensus 255 ~~~~~~~-lf~~f~~~l~~L~~LWEllLl~epIlVia~sP-~~~S~aV~aL~SLI~PL~y~g---------d~RPYfTIh 323 (621)
...|.+. |-+.+..+-+.|-.||++.|+.|+|||+++-| ..||..|.++. +++=++... ..||.|+|.
T Consensus 156 ~~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~pv~~~c~~vY~ls-~Ls~ip~~~~~~~~~~~~~~~Plf~Ig 234 (280)
T PF09804_consen 156 SPYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPPVEVACSFVYCLS-LLSSIPQSLSGSLPPELQRSQPLFNIG 234 (280)
T ss_pred CCCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCChHHHHHHHHHHH-hhccCCccccccCCcccccccceeEEe
Confidence 1122211 11122223577999999999999999998766 77888775544 333344332 379999987
Q ss_pred CccchhhhccCCCCCCCCeEEecchHHHHHhhCCCCeEEEcCCCC
Q 007016 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (621)
Q Consensus 324 D~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (621)
=.|-..+.+.. ..++|.-+|--.|+..-+=|+..|.+....
T Consensus 235 v~Di~~L~~~~----~~g~IAcTtD~IL~~K~~LYDv~V~l~~~~ 275 (280)
T PF09804_consen 235 VHDIDYLESEV----KAGWIACTTDEILLEKPELYDVLVDLPPNS 275 (280)
T ss_pred ecchHHHhhcc----CCcEEEEccHHHHhcCccceEEEEECCCCc
Confidence 76666565432 128999999999998888999999997653
No 9
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=99.12 E-value=4.9e-09 Score=110.66 Aligned_cols=252 Identities=18% Similarity=0.257 Sum_probs=180.4
Q ss_pred ChhhhhhhheeEEEEEeeCC----CCceeeeeCCCCCCChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCC
Q 007016 18 DPERMQRWVVAFCTIRFDLE----QGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLP 93 (621)
Q Consensus 18 ~~~~~~~Wv~~icvV~FDle----~Gq~vE~~YP~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~ 93 (621)
.|+.-..-...+|+|...-. .-|.|.++||++.-.++-.+.|+--||||.+--.. -...+--.|+|=+.+.
T Consensus 6 ~~~~~~~lfe~f~evs~pk~~~~~~~P~v~~QFP~d~~dee~lkaipqFCFP~~~e~~~-vs~~~~q~FsFvLTd~---- 80 (425)
T KOG3569|consen 6 ERQGVRTLFEYFVEVSLPKKPGNTYLPEVTYQFPPDFQDEEILKAIPQFCFPDAVEWLP-VSEYGSQTFSFVLTDE---- 80 (425)
T ss_pred hccCcccceeEEEEEecCCCCCCccCccchhhCCCccccHHHHhhchhccCCccccccc-ccccccceEEEEEEcC----
Confidence 44555666788999988766 44789999999877777788999999999852100 0011224677877654
Q ss_pred CCCCCCCcccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeeecCCCccCcceeeEEEEEecCCchhhHHHH
Q 007016 94 QGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPL 173 (621)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~kD~sv~RGy~QKSiVIlS~lPy~~lf~~l 173 (621)
+...=|||+- ++=| .++.+||||++|.+++|..+
T Consensus 81 -------------------------------------dg~rrFGfCR--------L~~G-~~~c~CilS~l~wF~vF~Kl 114 (425)
T KOG3569|consen 81 -------------------------------------DGSRRFGFCR--------LPSG-LPECYCILSRLGWFGVFSKL 114 (425)
T ss_pred -------------------------------------CCceeeeeEe--------cCCC-CCeEEEEeeCCChHHHHHHH
Confidence 1344578764 3333 88999999999999999999
Q ss_pred HHHhccccccccHHHHHHHHHHhccCCCCCCCCceeecccc-eEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCC
Q 007016 174 LQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGN-AMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSI 252 (621)
Q Consensus 174 L~~v~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg-~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 252 (621)
|..++..-=..-+..++-....+-.-|-|.||+++.|-... ..-..-||....+|
T Consensus 115 Ln~v~~~~~~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~e~ipd~r~Lp------------------------ 170 (425)
T KOG3569|consen 115 LNEVEDRRGISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGTEVIPDTRPLP------------------------ 170 (425)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCceEECcCCCCCC------------------------
Confidence 99887654333355566666777777999999988875432 11112233221111
Q ss_pred CCccccccchhhhhHhh-hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhh
Q 007016 253 PQGLFHDSDLFGTFRGL-LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLN 331 (621)
Q Consensus 253 P~~~~~~~~lf~~f~~~-l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~ 331 (621)
+.-...|+-..|..+ ..|+..|+-.+|.+++||++|.--+..|..+-|.++|+.|......|.|-++-|--|+-
T Consensus 171 --S~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~v--- 245 (425)
T KOG3569|consen 171 --SILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYV--- 245 (425)
T ss_pred --CcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHh---
Confidence 011223443344332 58899999999999999999999999999999999999999999999999998876552
Q ss_pred ccCCCCCCCCeEEecchHHHHHh
Q 007016 332 SLQEGDTFPPMVLGVTNLFFLKA 354 (621)
Q Consensus 332 ~~~~~~~~p~~IlGVTNPfF~k~ 354 (621)
-+|.|++|||.--+.++.
T Consensus 246 -----CaPmPyLIGv~~s~lerv 263 (425)
T KOG3569|consen 246 -----CAPMPYLIGVHSSLLERV 263 (425)
T ss_pred -----cCCcceeecchHHHHHHH
Confidence 268899999999988754
No 10
>KOG4704 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.2e-05 Score=84.53 Aligned_cols=266 Identities=19% Similarity=0.177 Sum_probs=160.9
Q ss_pred heeEEEEEeeCCCCceeeeeCCCCCCChhhhhhcccccCCCCccccCCCCccceeEEEEEeecCCCCCCCCCCCCccccc
Q 007016 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEI 105 (621)
Q Consensus 26 v~~icvV~FDle~Gq~vE~~YP~~~ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~ 105 (621)
|.||.+.+||-+.|-.||.+||.+. +.++|-|.+||-|.|- -..|++| ||+.+.-.. +
T Consensus 3 i~~i~l~~fd~k~g~~Vew~~p~di----dlegIEfks~psGihe-----~~~d~I~-Fr~~~~l~~--~---------- 60 (431)
T KOG4704|consen 3 IQAIVLATFDAKEGYNVEWYYPGDI----DLEGIEFKSFPSGIHE-----LDNDTIF-FRFQDQLCL--S---------- 60 (431)
T ss_pred eeEEEeeeeccccCceEEEeccccc----cccceeeecccccccc-----ccCceEE-EEecchhhh--h----------
Confidence 6799999999999999999999995 3458999999999752 3456787 887653100 0
Q ss_pred ccccCcchhHHHHHhhhccCCCCCCCCceEEEEEEEeee------cCCCccCccee-eEEEEEe--cCCchhhHHHHHHH
Q 007016 106 NDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQR------HDERLKRGGEQ-KSLVILS--HGPFSSVFRPLLQI 176 (621)
Q Consensus 106 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~fRQ~------kD~sv~RGy~Q-KSiVIlS--~lPy~~lf~~lL~~ 176 (621)
...+-..+-||-.+|-|- -|.+.-||-+| +|+-|+. .+-...+.+.+.+-
T Consensus 61 ---------------------~~~k~~~~~~~~~~F~~~~f~il~~d~~~~r~~vkm~s~g~~i~~~~~l~~~k~hF~e~ 119 (431)
T KOG4704|consen 61 ---------------------VFSKLQHPSFERSAFFTSVFLILSDDINFGRAVVKMGSTGLYIANGLSLATLKYHFGED 119 (431)
T ss_pred ---------------------hhhcccCcccccchHhhhhhhhccccchhhhhhheecceEEEeccchhHHHHHHHHHHH
Confidence 011223455777777773 78899999554 4555444 34455666677777
Q ss_pred hcccccccc-HHHHHHHHHHhccCC--CCCCCCceeecccceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCCC
Q 007016 177 MGPLYFDVG-KKAIEHIASYVSIWP--SPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIP 253 (621)
Q Consensus 177 v~p~yF~~g-~~~LE~a~~~I~~WP--~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P 253 (621)
+-+.|-..+ ..-|++.+.+...-- .+..++...+ ++- ++ ++.+. -+.+.....+
T Consensus 120 ~~h~ya~~~~~Shl~s~~rD~~k~l~~~~~~~e~~~~-~~~------l~---------s~~~~-------~~~~~~~~h~ 176 (431)
T KOG4704|consen 120 ASHTYASEKCTSHLLSDSRDFFKSLQTSAVNLEFDSL-FEK------LQ---------SNKFA-------ILGANSKEHS 176 (431)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhccccccccCch-hhh------cc---------cceEE-------ecCchhhhhh
Confidence 766665443 455666665554421 1111110000 000 00 00000 0000000001
Q ss_pred Cccccccchhhhh-HhhhHHHHHHHHHHHhCCcEEEECCC-h--hHHHHHHHHHHHhccCCCc------CCCcccccccc
Q 007016 254 QGLFHDSDLFGTF-RGLLLQLWVLWELLLIGEPILVIAPT-P--PQCCEAVASLVSLIAPLLC------SIDFRPYFTIH 323 (621)
Q Consensus 254 ~~~~~~~~lf~~f-~~~l~~L~~LWEllLl~epIlVia~s-P--~~~S~aV~aL~SLI~PL~y------~gd~RPYfTIh 323 (621)
+ .--..| ..+-+.+.-||+..|+.++||+++|- + ..|-.++.+++++ +-++- -.|-.|+|++.
T Consensus 177 ~------~y~~~~~~~lGp~i~~LwKfaLlrkRILi~sp~~~~~~~c~~~iyc~~~i-~~~s~~~Ig~~~sd~kPff~V~ 249 (431)
T KOG4704|consen 177 Q------SYATILLDHLGPAIYCLWKFALLRKRILIISPHDDQLYSCIDMIYCLSSI-KRSSDASIGILLSDLKPFFSVG 249 (431)
T ss_pred H------HHHHHHHHHhccHHHHHHHHHHHhheEEEEeCCCCceeehhhhHHHHHhh-hcCCccccCcccccCCceEEEE
Confidence 1 101112 22347799999999999999999977 3 2343566555443 22222 24779999998
Q ss_pred CccchhhhccCCCCCCCCeEEecchHHHHHhhCCCCeEEEcCCC
Q 007016 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSP 367 (621)
Q Consensus 324 D~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~ 367 (621)
-.|-.-+-+. ...-++|.-+|--.++..-+-.+.++...+.
T Consensus 250 ~adi~~les~---~~e~gyVAcTte~Ill~K~elYD~~v~~~~~ 290 (431)
T KOG4704|consen 250 LADISTLESN---DLEEGYVACTTETILLSKSELYDLAVYWPDN 290 (431)
T ss_pred cccccchhhc---ccccceEEechHHHHhcchhhheeEEeCCCC
Confidence 7766544332 3446799999999999988888888887654
No 11
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=98.05 E-value=1.2e-05 Score=92.10 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEecchH
Q 007016 270 LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNL 349 (621)
Q Consensus 270 l~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNP 349 (621)
+.--...|-+++++.+||+-+.+...+|-.|+|.+.||.||.|--...|.+.-.-+-=..+. -+|.++||||-..
T Consensus 306 vd~cL~VlT~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLL-----LAPTPfiIGVPaS 380 (1588)
T KOG3570|consen 306 VDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLL-----LAPTPYIIGVPAS 380 (1588)
T ss_pred HHHHHHHHHHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHh-----cCCCCeEeccchH
Confidence 34456789999999999999999999999999999999999999999999876654322222 4788999999999
Q ss_pred HHHHhh
Q 007016 350 FFLKAL 355 (621)
Q Consensus 350 fF~k~~ 355 (621)
||.-..
T Consensus 381 Ff~ykk 386 (1588)
T KOG3570|consen 381 FFLYKL 386 (1588)
T ss_pred Hhhhhh
Confidence 997554
No 12
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=97.13 E-value=0.0034 Score=73.86 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=115.2
Q ss_pred EEEEEEeeecCCCccCcceeeEEEEEecCCchhhHHHHHHHhccccccccHHHHHHHHHHhccC--CCCCCCCceeeccc
Q 007016 136 YGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIW--PSPVPGKLMELPIG 213 (621)
Q Consensus 136 YG~v~fRQ~kD~sv~RGy~QKSiVIlS~lPy~~lf~~lL~~v~p~yF~~g~~~LE~a~~~I~~W--P~p~pg~~l~Lp~l 213 (621)
|.||+---..|+ .+-.|.-+|||+||++.-+.-|+.+|.-|...|-...-..++....+|... -.|.-|+..... +
T Consensus 85 ~~~~ls~~e~~~-~t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~~~~~~~~~~li~~l~~~l~~~~s~~~~~~~t-l 162 (1732)
T KOG1090|consen 85 IAYVLSTWEEDE-KTLNFKAVSIVLISQNFHPKAFKEILLEISNDLRTPEFSSSSELIRFLTYELVEEGSTIEIRTKT-L 162 (1732)
T ss_pred EEEEeehhhhhh-hhhcccceEEEEEecccCHHHHHHHHHHHHHHhcCcccccHHHHHHHhheEEeecCCCCceEEEE-e
Confidence 455554444333 455599999999999999999999998877766554334455555555321 112212111111 1
Q ss_pred ceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCCh
Q 007016 214 NAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTP 293 (621)
Q Consensus 214 g~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP 293 (621)
|+-+.+. ..|.+ |++--...-||..+ -+.++..|..+||+.-+||+.+.+-
T Consensus 163 ~~~~~~~---------------------l~p~~------p~tg~~v~~lfk~l--g~qnvi~ii~a~lsd~ri~~~s~~~ 213 (1732)
T KOG1090|consen 163 HVELGFE---------------------LIPIS------PVTGKDVAMLFKML--GFQNVIKIIHALLSDCRIVLASSSL 213 (1732)
T ss_pred ecccCce---------------------eeecC------CCCCccHHHHHHHh--hhhHHHHHHHHHHhcceEeeehhHH
Confidence 1000000 01111 11111111133322 2688999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEecchHHHHHhhC
Q 007016 294 PQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALR 356 (621)
Q Consensus 294 ~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~k~~~ 356 (621)
=..|..+-|++||+.|+.|-..|.|.++- ..+|+. .+|.|+|+||...|-..--+
T Consensus 214 ~~ls~~~~ai~sllypf~y~h~~v~ilp~---~l~evl-----~sptpfl~gv~s~~~t~~~d 268 (1732)
T KOG1090|consen 214 MRLSRCQNAILSLLYPFEYVHSCVTILPD---SLAEVL-----ESPTPFLIGVLSEFVTSFGD 268 (1732)
T ss_pred HHHHHHHHHHHHHhcchheeeeeeeeccc---HHHHHh-----cCCCceeehhhHHHhhhcCC
Confidence 89999999999999999998887776643 344554 47889999999998765443
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=95.34 E-value=0.1 Score=61.05 Aligned_cols=288 Identities=17% Similarity=0.198 Sum_probs=161.5
Q ss_pred CChhhhhhhheeEEEEEeeCCCCcee----------------eeeCCCCC-CChhhhhhcccccCCCCccccCCCCccce
Q 007016 17 PDPERMQRWVVAFCTIRFDLEQGQLI----------------EDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHD 79 (621)
Q Consensus 17 ~~~~~~~~Wv~~icvV~FDle~Gq~v----------------E~~YP~~~-ls~~Ek~~Ia~laFPDs~~~~~n~~~~~D 79 (621)
.+-+.|.+...|+++..=|++-|-.. -..||.++ ..+=++..+|.++.|-+..+.-..+|.+-
T Consensus 61 ~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnPfd~~~~~ml~mP~gl~frtq~~~~Ep 140 (1295)
T KOG2080|consen 61 LPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNPFDKLDFFMLCMPKGLGFRTQDDVPEP 140 (1295)
T ss_pred CccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCcccccceeeeccccccceeccCCCCch
Confidence 34467777777777666666555432 23588776 66778899999999999766522334333
Q ss_pred eEEEEEeecCCCCCCCCCCC---Ccc-----------------cc-cccccCcchhHHHHHhhhccCCCCCCCCceEEEE
Q 007016 80 CIFFFRFQRHKNLPQGNVTP---SEI-----------------TE-INDKITSSELTEEKLLKRSKSFSSSKGSRYFYGY 138 (621)
Q Consensus 80 t~F~Frir~~~~~~~~~~~~---~~~-----------------~~-~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~ 138 (621)
-.-+|-+.+..+.+....+- .+. ++ +++-.+.|++.-+ .. .+ -...++..+ .
T Consensus 141 ~FhSfiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~~~s~sd~~-l~---ss-ldrsep~~v--~ 213 (1295)
T KOG2080|consen 141 QFHSFIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLEALSDSDKD-LT---SS-LDRSEPTEV--V 213 (1295)
T ss_pred hhheeeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhhcCccchhh-cc---Cc-cccCCCcee--e
Confidence 23345555544444322110 000 11 1222222222221 10 01 111222222 1
Q ss_pred EEEe--eecCCCccCcceeeEEEEEecCCchhhHHHHHHHhccccccccH--HHHHHHHHHh-ccCCCCCCCCceeeccc
Q 007016 139 VFNR--QRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGK--KAIEHIASYV-SIWPSPVPGKLMELPIG 213 (621)
Q Consensus 139 v~fR--Q~kD~sv~RGy~QKSiVIlS~lPy~~lf~~lL~~v~p~yF~~g~--~~LE~a~~~I-~~WP~p~pg~~l~Lp~l 213 (621)
|.=| ..+|.+-.-=|+-|||++++.+||-.--+.+|..+...--..+. -.||....|| -.-|-|.||..+.
T Consensus 214 v~g~~~~~ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~---- 289 (1295)
T KOG2080|consen 214 VLGRVKNSYDISRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLK---- 289 (1295)
T ss_pred eechhhhccccccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHHHhhhheecccCCCCceee----
Confidence 1111 12455555579999999999999998877777766665554442 3577755555 4567777777433
Q ss_pred ceEEEEeCCCCCCCCCccCCcccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCCh
Q 007016 214 NAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTP 293 (621)
Q Consensus 214 g~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLl~epIlVia~sP 293 (621)
+..+... +. ...++ ..-.|+.+|-.-.+|..+ -+.++..|++|||+.--||.++.+-
T Consensus 290 -----vy~~~~~-------ii------~q~~~---a~elpL~dfplR~~F~~l--gVenviql~tCvLle~qill~s~dy 346 (1295)
T KOG2080|consen 290 -----VYGVYDP-------II------CQRPF---ADELPLDDFPLREYFELL--GVENVIQLFTCVLLENQILLYSQDY 346 (1295)
T ss_pred -----EEecCCc-------cc------ccCCC---CcccccccHhHHHHHHHh--cchHHHHHHHHHHhhhHHHhhhhhH
Confidence 2222210 00 00000 011122222111122111 2688999999999999999999998
Q ss_pred hHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEec
Q 007016 294 PQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGV 346 (621)
Q Consensus 294 ~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGV 346 (621)
...--..-++.+|+.|+.....|-|.++-.-.-|- ..+-++|.|-
T Consensus 347 qrlm~v~e~itsllfpf~w~hvy~pilpa~l~hFl--------dapvp~lmGl 391 (1295)
T KOG2080|consen 347 QRLMTVAECITSLLFPFQWQHVYVPILPASLLHFL--------DAPVPYLMGL 391 (1295)
T ss_pred HHHHHHHhhhhhhccccccccccccccHHHHHHHh--------cCCcceeccc
Confidence 87777777889999999999999998865433331 2445566664
No 14
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms]
Probab=92.11 E-value=0.53 Score=57.02 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEecchHH
Q 007016 271 LQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLF 350 (621)
Q Consensus 271 ~~L~~LWEllLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPf 350 (621)
.++..|-+++||..+|+|.+..|..|..-+=|++|++.||..-+.|.|--... |+++. .+|-++|+||---|
T Consensus 33 e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl~---la~vl-----~aP~pf~~g~~s~~ 104 (1020)
T KOG2127|consen 33 ENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPLG---LADVL-----HAPLPFLMGVDSRY 104 (1020)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccch---hcccc-----cCCcccccCCChhh
Confidence 67888999999999999999999999999999999999999887666655444 33333 46788999999999
Q ss_pred HHHh
Q 007016 351 FLKA 354 (621)
Q Consensus 351 F~k~ 354 (621)
|.-.
T Consensus 105 f~~~ 108 (1020)
T KOG2127|consen 105 FELY 108 (1020)
T ss_pred hhcc
Confidence 9887
No 15
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.07 Score=58.76 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHhhccHHHHh-ccCCceehhhHHHHHHHHH
Q 007016 535 DLYRRFLKGPNFMP----WFQRRRAAAEQEQHRLWRQARMRTDIQQLI-AKMSELESVDTFNAVERHL 597 (621)
Q Consensus 535 ~LYrrF~~spnF~~----Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~-~~~~eve~vd~~~~l~~~l 597 (621)
-.|++|-.|-||.+ ||-++...+..++.-+|-.++|.+|+---+ .-+.-+|+||++++|---|
T Consensus 213 ~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL 280 (565)
T KOG2432|consen 213 VELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPL 280 (565)
T ss_pred eeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcc
Confidence 34999999999999 999999999999999999999999985433 4567899999999864433
No 16
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=90.09 E-value=1.4 Score=38.29 Aligned_cols=66 Identities=20% Similarity=0.216 Sum_probs=43.0
Q ss_pred hhheeEEEEEeeCCCC-------ceeeeeCCCCC-CChhhhhhcccccCCCCccccCCCCccceeEEEEEeecC
Q 007016 24 RWVVAFCTIRFDLEQG-------QLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRH 89 (621)
Q Consensus 24 ~Wv~~icvV~FDle~G-------q~vE~~YP~~~-ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~ 89 (621)
+-+.+++||.-|.+.+ +.|-..||+.. -......+|+..+||++..............|+|-+.+.
T Consensus 3 rl~d~f~vvg~~~~~~~~~~~~~p~il~~yP~~~~~~~~~~~~i~~FCfP~G~~~~~~~~~~~~~~f~FvLT~~ 76 (89)
T smart00800 3 RLFDYFVVVGLDSDTGPLGRSYKPEILQRYPEKDEEDFPLPDSIPLFCFPEGLLFVTQKSSKDPQFFSFVLTDI 76 (89)
T ss_pred cceeEEEEEeCCCCCCCcCcccceEEEeECCCCCCccCCCccCCCeeECCCCeEeecccCCCCCcEEEEEEECC
Confidence 4567899999987643 57788999853 222345678989999986432111223346777887553
No 17
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=78.52 E-value=4.3 Score=33.04 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=28.9
Q ss_pred ceeeeeCCCCC--CChhhhhhcccccCCCCccccCCCCccceeEEEEEeecC
Q 007016 40 QLIEDCYPPGC--LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRH 89 (621)
Q Consensus 40 q~vE~~YP~~~--ls~~Ek~~Ia~laFPDs~~~~~n~~~~~Dt~F~Frir~~ 89 (621)
+.|-..||+.. -......+|+..+||++....... ....+.|.|-+.+.
T Consensus 2 p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~~ 52 (65)
T PF03456_consen 2 PEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQS-RPPPQFFSFVLTDE 52 (65)
T ss_dssp -EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-T
T ss_pred CEEEEECCCCccccCCCChhhCCccCCCCCcEeeccc-cCCCeEEEEEEECC
Confidence 46778899854 345567889999999997543221 23458888888664
No 18
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=60.99 E-value=7.8 Score=31.74 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCC
Q 007016 465 EILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGP 544 (621)
Q Consensus 465 ~lLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~sp 544 (621)
..||.-|+..=.+.|.=...|+...... +. .-|+.+.||++... +-..+|+.|++|-
T Consensus 3 ~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~--------~~--~~F~~~~Fl~~~~~-------------~~~~Fl~~f~~TQ 59 (68)
T PF03455_consen 3 DQIREAFLRFFVSLLGNYREYLIYDRQS--------PR--VIFDKEAFLKSRPK-------------ESRPFLKAFLETQ 59 (68)
T ss_dssp THHHHHHHHHHHHHHGGGGGG-----------------------HHHHS--SSH-------------HHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CC--ceeccHHHHhcCCh-------------hHhHHHHHHHHHH
Confidence 3678888877777777777777554221 11 57999999998211 1238999999999
Q ss_pred CChHHHHHH
Q 007016 545 NFMPWFQRR 553 (621)
Q Consensus 545 nF~~Wl~~r 553 (621)
.|..|++.|
T Consensus 60 ~F~~Fi~~R 68 (68)
T PF03455_consen 60 MFEQFIEER 68 (68)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHhcC
Confidence 999999876
No 19
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=57.47 E-value=15 Score=30.05 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCC
Q 007016 466 ILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPN 545 (621)
Q Consensus 466 lLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spn 545 (621)
.||.-|+..=.+.+.-...|+..+ .+.+....-|+.+.||++.+. +...+|+.|+.|-.
T Consensus 3 ~Ir~aFl~~f~~l~~~Y~~~l~~~--------~~~~~~~~~F~~~~Fl~~~~~-------------~~~~Fl~~~~~TQ~ 61 (69)
T smart00801 3 EIREAFLRFFVNLFGGYRNFLREL--------RKEPGPVITFDKESFLKSRPS-------------SERPFLSKFLETQM 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCCCceeCHHHHHHhCCc-------------hhhHHHHHHHHHhh
Confidence 466666665444444455555421 012234568999999997222 23579999999999
Q ss_pred ChHHHHHH
Q 007016 546 FMPWFQRR 553 (621)
Q Consensus 546 F~~Wl~~r 553 (621)
|...++.|
T Consensus 62 F~~Fi~~r 69 (69)
T smart00801 62 FSQFIEER 69 (69)
T ss_pred HHHHHhcC
Confidence 98887654
No 20
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.64 E-value=54 Score=31.85 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=60.2
Q ss_pred HHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEecchHHHH----Hh
Q 007016 279 LLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFL----KA 354 (621)
Q Consensus 279 llLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGVTNPfF~----k~ 354 (621)
+---+.+|.++|.++..+.++...|..--..+...|-+-||| ...+-.++.+.-+...+-=+++|.-.|-.+ +.
T Consensus 44 ~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~ 121 (172)
T PF03808_consen 44 AEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH 121 (172)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 333468999999999999999999999999999999999999 333344444322222333478999999433 33
Q ss_pred hCCCC--eEEEcCCC
Q 007016 355 LRKIP--HIVSVGSP 367 (621)
Q Consensus 355 ~~~WP--hil~l~~~ 367 (621)
.+..+ .++.+|..
T Consensus 122 ~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 122 RQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHCCCCEEEEECch
Confidence 33333 45666643
No 21
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=34.34 E-value=38 Score=28.56 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q 007016 536 LYRRFLKGPNFMPWFQRRRAAAEQ 559 (621)
Q Consensus 536 LYrrF~~spnF~~Wl~~r~~~~~~ 559 (621)
||++-+.||+|-.|-++-++-++.
T Consensus 4 Ly~kLl~SpgFhrfVR~Ih~kVN~ 27 (68)
T PF10906_consen 4 LYRKLLDSPGFHRFVRRIHAKVNG 27 (68)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhC
Confidence 899999999999999988877764
No 22
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=25.58 E-value=1.7e+02 Score=28.43 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCcc--chhhhccCCCCCCCC-eEEecchHHHHH----hh
Q 007016 283 GEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQ--FAHLNSLQEGDTFPP-MVLGVTNLFFLK----AL 355 (621)
Q Consensus 283 ~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~--F~~~~~~~~~~~~p~-~IlGVTNPfF~k----~~ 355 (621)
+.+|.++|.+|+.+..++..+...-..+...|.+-|||.--+.+ ...++ ...|- +++|.-.|-.++ ..
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~-----~~~pdiv~vglG~PkQE~~~~~~~ 120 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN-----ASGADILFVGLGAPKQELWIARHK 120 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH-----HcCCCEEEEECCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999899999644322 22222 22344 789999994443 23
Q ss_pred CC--CCeEEEcCC
Q 007016 356 RK--IPHIVSVGS 366 (621)
Q Consensus 356 ~~--WPhil~l~~ 366 (621)
++ -+.++.+|.
T Consensus 121 ~~l~~~v~~~vG~ 133 (171)
T cd06533 121 DRLPVPVAIGVGG 133 (171)
T ss_pred HHCCCCEEEEece
Confidence 33 355666664
No 23
>PF06218 NPR2: Nitrogen permease regulator 2; InterPro: IPR009348 This family of regulators are involved in post-translational control of nitrogen permease.
Probab=24.64 E-value=65 Score=36.30 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=32.9
Q ss_pred heeEEEEEeeCCCCceeeeeCCCCCC--ChhhhhhcccccCCCC
Q 007016 26 VVAFCTIRFDLEQGQLIEDCYPPGCL--TQDEELEVAYSSFPDS 67 (621)
Q Consensus 26 v~~icvV~FDle~Gq~vE~~YP~~~l--s~~Ek~~Ia~laFPDs 67 (621)
|+||--.+||...|+.|.|++|++.+ +......|...-.|..
T Consensus 5 I~~IFya~F~p~~GpkI~~Q~P~~~i~~~~~~Fd~is~yIIPk~ 48 (428)
T PF06218_consen 5 IHAIFYAEFHPTEGPKIVHQVPEGSIKPSLFNFDSISNYIIPKP 48 (428)
T ss_pred eEEEEEeecCCCCCCEEEEECCcccccccccchhhcccEEecCh
Confidence 78999999999999999999999987 4444444554555654
No 24
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=22.41 E-value=45 Score=29.04 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.0
Q ss_pred cccccCccchhhhcc
Q 007016 319 YFTIHDPQFAHLNSL 333 (621)
Q Consensus 319 YfTIhD~~F~~~~~~ 333 (621)
=||..|.+|.+|.+.
T Consensus 10 RfTe~D~ey~~~~~~ 24 (81)
T PF15320_consen 10 RFTEDDEEYMEYCKR 24 (81)
T ss_pred hccccCHHHHHHHhC
Confidence 389999999999864
No 25
>COG4970 FimT Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.06 E-value=92 Score=31.14 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=22.5
Q ss_pred cCCCChHHHHHHH-HHHHHHHHHHHHHHHhhc
Q 007016 542 KGPNFMPWFQRRR-AAAEQEQHRLWRQARMRT 572 (621)
Q Consensus 542 ~spnF~~Wl~~r~-~~~~~~~~~l~~~a~~~~ 572 (621)
-=|||..|+++.| +.+-++|...-..|+.+|
T Consensus 29 A~P~fs~~i~~~rl~s~a~eL~a~l~lARteA 60 (181)
T COG4970 29 AAPNFSQWIRSQRLRSAADELAAALQLARTEA 60 (181)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3499999998877 555667777666666655
No 26
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=20.12 E-value=68 Score=25.14 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007016 533 WLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTD 573 (621)
Q Consensus 533 w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d 573 (621)
...|||+++|+..-.+|.. .+..+..+.+..+++-....|
T Consensus 3 vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d 42 (59)
T PF05347_consen 3 VLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETD 42 (59)
T ss_pred HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCC
Confidence 5789999999875544444 344555566666665554444
Done!