Query 007016
Match_columns 621
No_of_seqs 170 out of 230
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 14:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gkub1 c.37.1.16 (B:1-250) He 10.9 2.2E+02 0.016 24.4 6.8 35 279-313 82-116 (237)
2 d1ug7a_ a.24.24.1 (A:) Domain 10.9 1.1E+02 0.0081 25.2 4.1 45 557-604 11-56 (128)
3 d1zeea1 a.266.1.2 (A:6-392) Hy 9.0 97 0.0071 30.3 3.5 47 545-603 5-51 (387)
4 d1uz5a3 c.57.1.2 (A:181-328) M 8.0 1.7E+02 0.013 24.1 4.5 35 581-616 43-78 (148)
5 d1cxzb_ a.2.6.1 (B:) Protein k 7.8 3E+02 0.022 21.2 5.3 61 544-604 17-82 (86)
6 d1s4ea2 d.58.26.7 (A:181-351) 7.8 1.5E+02 0.011 25.4 4.0 49 548-602 18-66 (171)
7 d1qbaa4 d.92.2.1 (A:201-337) B 7.4 1.3E+02 0.0094 24.0 3.3 43 281-325 93-135 (137)
8 d1f2va_ c.23.17.1 (A:) Precorr 7.3 1.9E+02 0.014 25.8 4.6 57 282-368 127-192 (209)
9 d2nqra3 c.57.1.2 (A:178-326) M 7.2 1.6E+02 0.011 24.5 3.8 34 582-616 44-78 (149)
10 d1h3ga2 b.71.1.1 (A:518-600) C 7.1 1.2E+02 0.009 23.0 2.7 20 138-165 12-31 (83)
No 1
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.91 E-value=2.2e+02 Score=24.45 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=27.3
Q ss_pred HHHhCCcEEEECCChhHHHHHHHHHHHhccCCCcC
Q 007016 279 LLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCS 313 (621)
Q Consensus 279 llLl~epIlVia~sP~~~S~aV~aL~SLI~PL~y~ 313 (621)
++.-|.++||+.|+-+.+.+....+..+...+...
T Consensus 82 ~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 82 LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp HHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCc
Confidence 34468899999999999999988888877654443
No 2
>d1ug7a_ a.24.24.1 (A:) Domain from hypothetical 2610208m17rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.91 E-value=1.1e+02 Score=25.19 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHH-HhhccHHHHhccCCceehhhHHHHHHHHHHHHHHhc
Q 007016 557 AEQEQHRLWRQA-RMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQEI 604 (621)
Q Consensus 557 ~~~~~~~l~~~a-~~~~d~~~~~~~~~eve~vd~~~~l~~~l~~e~~~~ 604 (621)
.+..+..-|.++ ...+|...|.+ =||.+|=+..|.|+|..|++..
T Consensus 11 ~tk~~v~kW~a~~~kgtdFDSWGQ---LVEA~dEYq~lar~L~k~~~~q 56 (128)
T d1ug7a_ 11 VTRSLLQRWGASLRRGADFDSWGQ---LVEAIDEYQILARHLQKEAQAQ 56 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhccCCcchHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 344434455544 45678888865 6899999999999999998765
No 3
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella oneidensis [TaxId: 70863]}
Probab=9.02 E-value=97 Score=30.26 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCceehhhHHHHHHHHHHHHHHh
Q 007016 545 NFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQE 603 (621)
Q Consensus 545 nF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vd~~~~l~~~l~~e~~~ 603 (621)
+|+.|++.+-.|++-+|+.+|.+-- ++..|+-|.- .|+++|+.|=+.
T Consensus 5 ~~d~wir~~f~~~n~~le~~y~~~~----------~~~~~~~~g~--~~k~~l~~~g~~ 51 (387)
T d1zeea1 5 AFDEWIRSRFVELNSQLEQLYYQQT----------DRANVQEVGT--ELKHTLESEGRE 51 (387)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHSS----------SSSCCSSSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC----------CccccccchH--HHHHHHHHHHHH
Confidence 5899999999999999999987654 3556666654 345777777543
No 4
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=7.99 E-value=1.7e+02 Score=24.06 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=25.8
Q ss_pred CCceehh-hHHHHHHHHHHHHHHhccEEEEeecchhc
Q 007016 581 MSELESV-DTFNAVERHLIQEIQEIQFVFTTFSTISI 616 (621)
Q Consensus 581 ~~eve~v-d~~~~l~~~l~~e~~~~~~~~~~~~~~~~ 616 (621)
-....+| |-.-.|++.+.+-++.+|+|+|| ...|.
T Consensus 43 v~~~~~v~Dd~~~i~~~i~~~~~~~DliItt-GG~s~ 78 (148)
T d1uz5a3 43 GIFMGVARDDKESLKALIEKAVNVGDVVVIS-GGASG 78 (148)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHCSEEEEE-CCC--
T ss_pred ceeeeeeccHHHHHHHHHHhhhccccEEEEC-CCccc
Confidence 3455666 77888888888888899999999 55553
No 5
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.81 E-value=3e+02 Score=21.19 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhcc-CCceehhhHHHHH----HHHHHHHHHhc
Q 007016 544 PNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAK-MSELESVDTFNAV----ERHLIQEIQEI 604 (621)
Q Consensus 544 pnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~-~~eve~vd~~~~l----~~~l~~e~~~~ 604 (621)
|.|...++.+|+.+.++++.-..=--...++..-+.+ |.-.+-|++.|+- -++|.+|++..
T Consensus 17 ~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~attd~kk~~~~V~~eL~~sN~kL~~L~~eL~eL 82 (86)
T d1cxzb_ 17 PGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4477889999988888666533311122334333444 5566778887753 34677777654
No 6
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.78 E-value=1.5e+02 Score=25.44 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCceehhhHHHHHHHHHHHHHH
Q 007016 548 PWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQ 602 (621)
Q Consensus 548 ~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vd~~~~l~~~l~~e~~ 602 (621)
+=|+.|++|+++-.+.+..+.+++.+...+-+ . -+...+--+|+..|.+
T Consensus 18 s~Yn~R~~ec~~a~~~lg~~~l~~~~~~~l~~-l-----~~~~~~Ra~Hvv~En~ 66 (171)
T d1s4ea2 18 SEYAERKRIAEESLRILGKESSKEVTEKDLGK-L-----PPLHRKFFSYIVRENA 66 (171)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCGGGCCHHHHHT-S-----CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhhhHHHHhh-c-----CHHHHHHHHHHHHHHH
Confidence 45778999999988888888888887766532 1 2333444556666643
No 7
>d1qbaa4 d.92.2.1 (A:201-337) Bacterial chitobiase, Domain 2 {Serratia marcescens [TaxId: 615]}
Probab=7.44 E-value=1.3e+02 Score=24.01 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=34.4
Q ss_pred HhCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCc
Q 007016 281 LIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDP 325 (621)
Q Consensus 281 Ll~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~ 325 (621)
++.+.|.|-|.++.-+-.++..|.-||.. -.+...|..+|.|.
T Consensus 93 i~~~~I~I~a~~~~G~~yglqTL~QLi~~--~~~~~ip~~~I~D~ 135 (137)
T d1qbaa4 93 IGKKEAQVIGFDQAGVFYGLQSILSLVPS--DGSGKIATLDASDA 135 (137)
T ss_dssp ECSSCEEEEESSHHHHHHHHHHHHHHSCS--SSCCEEEEEEEEEC
T ss_pred EeCCeEEEEECCHHHHHHHHHHHHHHHhc--cCCCccccEEEEeC
Confidence 46788999999999999999999999842 12335788888884
No 8
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=7.26 E-value=1.9e+02 Score=25.79 Aligned_cols=57 Identities=19% Similarity=0.362 Sum_probs=34.6
Q ss_pred hCCcEEEECCChhHHHHHHHHHHHhccCCCcCCCccccccccCccchhhhccCCCCCCCCeEEec----chHHHHHh-h-
Q 007016 282 IGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGV----TNLFFLKA-L- 355 (621)
Q Consensus 282 l~epIlVia~sP~~~S~aV~aL~SLI~PL~y~gd~RPYfTIhD~~F~~~~~~~~~~~~p~~IlGV----TNPfF~k~-~- 355 (621)
.+..|+|+|+.|+-. +.|+.||. ++...|..|+|+ .|--=.|. |
T Consensus 127 ~~gaIvvIGNAPTAL----~~lleli~--------------------------~g~~~PalVIG~PVGFVgaaESK~~L~ 176 (209)
T d1f2va_ 127 LAGSVVAIGNAPTAL----FFLLEMLR--------------------------DGAPKPAAILGMPVGFVGAAESKDALA 176 (209)
T ss_dssp HTTCEEEECSCHHHH----HHHHHHHH--------------------------TTCCCCSEEEECCCSSSSHHHHHHHHH
T ss_pred CCCCEEEEcCChHHH----HHHHHHHh--------------------------cCCCCCcEEEECCccccChHHHHHHHH
Confidence 478999999999854 34445554 223456677665 33322222 2
Q ss_pred ---CCCCeEEEcCCCC
Q 007016 356 ---RKIPHIVSVGSPA 368 (621)
Q Consensus 356 ---~~WPhil~l~~~~ 368 (621)
..-|+|...|..+
T Consensus 177 ~s~~~vP~It~~GrkG 192 (209)
T d1f2va_ 177 ENSYGVPFAIVRGRLG 192 (209)
T ss_dssp HCCTTCCEEEECTTCC
T ss_pred hCCCCCCEEEEecCCC
Confidence 2579988887653
No 9
>d2nqra3 c.57.1.2 (A:178-326) MoeA, central domain {Escherichia coli [TaxId: 562]}
Probab=7.21 E-value=1.6e+02 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=26.2
Q ss_pred Cceehh-hHHHHHHHHHHHHHHhccEEEEeecchhc
Q 007016 582 SELESV-DTFNAVERHLIQEIQEIQFVFTTFSTISI 616 (621)
Q Consensus 582 ~eve~v-d~~~~l~~~l~~e~~~~~~~~~~~~~~~~ 616 (621)
....+| |-.-.|++.+++-...+|+|+|| ..+|.
T Consensus 44 ~~~~~v~Dd~~~i~~~l~~~~~~~Divitt-GG~s~ 78 (149)
T d2nqra3 44 INLGIIRDDPHALRAAFIEADSQADVVISS-GGVSV 78 (149)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHCSEEEEC-SSSCS
T ss_pred EEccccCChHHHHHHHHHhcccccCEEEEc-CCccC
Confidence 355566 77788888888888889999999 66554
No 10
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=7.13 E-value=1.2e+02 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=14.8
Q ss_pred EEEEeeecCCCccCcceeeEEEEEecCC
Q 007016 138 YVFNRQRHDERLKRGGEQKSLVILSHGP 165 (621)
Q Consensus 138 ~v~fRQ~kD~sv~RGy~QKSiVIlS~lP 165 (621)
|||||.-.|+ +-+||+-.-.
T Consensus 12 YvyfR~~~~~--------~VmVi~N~n~ 31 (83)
T d1h3ga2 12 WVYFRYNKDK--------RIMVAMNNND 31 (83)
T ss_dssp EEEEEECSSE--------EEEEEEECSS
T ss_pred EEEEEEeCCC--------EEEEEECCCC
Confidence 7999998884 5677776643
Done!