Query 007018
Match_columns 621
No_of_seqs 438 out of 3110
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 17:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337 ATP-dependent RNA heli 100.0 5E-102 1E-106 782.0 30.6 508 11-552 9-517 (529)
2 KOG0330 ATP-dependent RNA heli 100.0 2E-78 4.3E-83 606.5 34.2 374 19-396 57-430 (476)
3 KOG0345 ATP-dependent RNA heli 100.0 5.2E-75 1.1E-79 593.9 36.6 425 22-481 3-439 (567)
4 KOG0338 ATP-dependent RNA heli 100.0 3.4E-75 7.4E-80 598.7 33.3 360 23-384 181-544 (691)
5 KOG0331 ATP-dependent RNA heli 100.0 3.3E-73 7.2E-78 604.6 34.8 370 24-394 92-469 (519)
6 KOG0342 ATP-dependent RNA heli 100.0 1.3E-72 2.8E-77 580.3 36.0 421 22-478 81-507 (543)
7 KOG0343 RNA Helicase [RNA proc 100.0 8.7E-73 1.9E-77 585.5 33.6 358 22-382 68-432 (758)
8 COG0513 SrmB Superfamily II DN 100.0 3.3E-71 7.1E-76 611.8 41.8 365 23-390 29-398 (513)
9 KOG0340 ATP-dependent RNA heli 100.0 1.6E-70 3.5E-75 543.7 30.2 371 21-393 5-381 (442)
10 KOG0328 Predicted ATP-dependen 100.0 2.6E-69 5.7E-74 519.9 27.6 373 17-394 21-394 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 4E-68 8.6E-73 548.7 32.5 363 22-387 244-638 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 4.1E-65 8.9E-70 555.2 42.7 370 21-393 6-382 (423)
13 KOG0348 ATP-dependent RNA heli 100.0 1E-65 2.2E-70 531.6 34.8 446 18-478 131-646 (708)
14 PTZ00110 helicase; Provisional 100.0 2.7E-64 5.8E-69 561.6 43.5 369 22-391 129-502 (545)
15 KOG0326 ATP-dependent RNA heli 100.0 4E-66 8.7E-71 505.2 20.3 370 20-395 82-451 (459)
16 PRK04537 ATP-dependent RNA hel 100.0 2.1E-63 4.6E-68 556.3 43.7 371 23-395 9-386 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 3.4E-63 7.3E-68 545.8 43.6 364 22-391 3-367 (460)
18 PRK11634 ATP-dependent RNA hel 100.0 5.9E-63 1.3E-67 555.9 46.0 372 22-398 5-379 (629)
19 PRK10590 ATP-dependent RNA hel 100.0 4.4E-63 9.6E-68 543.3 43.1 364 23-389 1-368 (456)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-62 3.7E-67 545.4 42.2 370 22-393 120-495 (518)
21 PRK11192 ATP-dependent RNA hel 100.0 3E-61 6.5E-66 526.9 44.1 363 24-389 2-368 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 2.2E-63 4.7E-68 499.3 24.8 369 22-393 218-592 (629)
23 KOG0341 DEAD-box protein abstr 100.0 3.6E-64 7.8E-69 501.9 15.5 363 21-387 168-543 (610)
24 KOG0346 RNA helicase [RNA proc 100.0 2.5E-62 5.5E-67 496.5 28.7 363 23-386 19-423 (569)
25 KOG0335 ATP-dependent RNA heli 100.0 1.7E-62 3.6E-67 514.3 27.7 365 23-388 74-459 (482)
26 KOG0339 ATP-dependent RNA heli 100.0 1.1E-61 2.4E-66 498.2 32.1 365 20-386 220-588 (731)
27 PRK01297 ATP-dependent RNA hel 100.0 6.1E-60 1.3E-64 521.6 45.0 366 22-390 86-459 (475)
28 KOG0347 RNA helicase [RNA proc 100.0 9.4E-63 2E-67 510.9 20.0 365 22-389 180-586 (731)
29 KOG0334 RNA helicase [RNA proc 100.0 8.2E-60 1.8E-64 524.4 30.9 373 20-393 362-740 (997)
30 PTZ00424 helicase 45; Provisio 100.0 7.7E-58 1.7E-62 495.3 42.2 367 22-393 27-394 (401)
31 KOG0327 Translation initiation 100.0 6.2E-58 1.3E-62 460.9 25.2 366 23-395 26-392 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 9.5E-57 2.1E-61 448.0 27.0 360 22-388 89-459 (477)
33 KOG0350 DEAD-box ATP-dependent 100.0 3.3E-54 7.3E-59 443.6 28.8 357 24-383 128-550 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 1.8E-52 3.9E-57 479.6 41.4 362 22-391 11-406 (742)
35 KOG4284 DEAD box protein [Tran 100.0 1.2E-52 2.7E-57 441.4 21.7 354 22-381 24-388 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 7E-51 1.5E-55 428.9 25.7 362 23-386 132-508 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-47 2.7E-52 422.3 37.4 324 41-382 7-342 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 4.9E-47 1.1E-51 432.4 39.9 342 22-381 434-795 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 7.7E-46 1.7E-50 418.8 38.6 331 30-381 9-351 (607)
40 KOG0329 ATP-dependent RNA heli 100.0 2.1E-47 4.5E-52 363.5 15.4 332 22-393 41-376 (387)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.2E-45 4.8E-50 413.9 33.6 315 41-372 12-390 (844)
42 PRK02362 ski2-like helicase; P 100.0 1.9E-45 4.1E-50 425.3 33.9 338 23-373 1-397 (737)
43 PRK13767 ATP-dependent helicas 100.0 5.2E-45 1.1E-49 425.8 37.7 342 30-375 18-401 (876)
44 TIGR00580 mfd transcription-re 100.0 2.9E-44 6.3E-49 415.7 40.1 322 29-373 435-770 (926)
45 TIGR01389 recQ ATP-dependent D 100.0 3.5E-44 7.6E-49 405.9 36.9 320 41-381 9-339 (591)
46 PRK00254 ski2-like helicase; P 100.0 5.3E-44 1.1E-48 412.3 36.2 338 24-375 2-390 (720)
47 PRK10689 transcription-repair 100.0 7.3E-43 1.6E-47 412.1 41.3 333 15-372 573-918 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 3.9E-42 8.5E-47 392.7 41.0 318 32-371 248-587 (681)
49 TIGR00643 recG ATP-dependent D 100.0 1.6E-41 3.6E-46 385.1 40.6 319 32-371 223-564 (630)
50 PRK01172 ski2-like helicase; P 100.0 2.2E-41 4.7E-46 388.7 34.0 336 24-377 2-383 (674)
51 PRK09401 reverse gyrase; Revie 100.0 3.2E-41 6.9E-46 399.0 31.9 298 41-360 77-431 (1176)
52 PHA02653 RNA helicase NPH-II; 100.0 9.1E-41 2E-45 374.8 33.0 313 47-376 166-517 (675)
53 PRK09751 putative ATP-dependen 100.0 9.7E-40 2.1E-44 387.3 35.8 322 65-390 1-404 (1490)
54 COG1201 Lhr Lhr-like helicases 100.0 8.4E-40 1.8E-44 366.9 31.9 337 30-372 8-361 (814)
55 TIGR01054 rgy reverse gyrase. 100.0 2E-39 4.3E-44 384.3 36.3 290 34-344 67-408 (1171)
56 PRK12898 secA preprotein trans 100.0 2.5E-39 5.4E-44 357.9 32.8 320 41-374 100-587 (656)
57 PRK14701 reverse gyrase; Provi 100.0 1.9E-39 4.2E-44 391.1 33.4 324 33-378 67-461 (1638)
58 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.3E-38 2.8E-43 365.4 33.8 308 50-377 7-340 (819)
59 PRK09200 preprotein translocas 100.0 2.5E-38 5.5E-43 356.8 33.7 322 41-375 75-543 (790)
60 PRK05580 primosome assembly pr 100.0 1.4E-37 3E-42 354.0 38.4 395 45-457 144-657 (679)
61 PRK11664 ATP-dependent RNA hel 100.0 3.1E-38 6.8E-43 363.0 32.0 306 51-376 11-342 (812)
62 KOG0349 Putative DEAD-box RNA 100.0 1.2E-39 2.7E-44 329.9 16.6 291 94-387 287-629 (725)
63 PHA02558 uvsW UvsW helicase; P 100.0 4.4E-38 9.4E-43 348.6 29.3 303 43-364 112-443 (501)
64 TIGR01587 cas3_core CRISPR-ass 100.0 7.3E-38 1.6E-42 334.0 28.4 300 62-374 1-337 (358)
65 TIGR03714 secA2 accessory Sec 100.0 1.5E-37 3.3E-42 347.4 31.6 321 42-375 68-539 (762)
66 COG1111 MPH1 ERCC4-like helica 100.0 3E-36 6.4E-41 313.9 35.4 330 42-379 12-489 (542)
67 TIGR00963 secA preprotein tran 100.0 9.6E-37 2.1E-41 338.9 32.6 321 41-375 53-519 (745)
68 COG0514 RecQ Superfamily II DN 100.0 7.2E-36 1.6E-40 324.5 31.0 324 38-381 9-345 (590)
69 TIGR00595 priA primosomal prot 100.0 2E-35 4.4E-40 325.3 29.7 371 64-452 1-483 (505)
70 PRK13766 Hef nuclease; Provisi 100.0 2.7E-34 5.9E-39 335.6 38.5 325 42-374 12-480 (773)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-34 3.9E-39 306.5 30.8 290 49-358 1-357 (357)
72 COG1205 Distinct helicase fami 100.0 4.1E-33 8.9E-38 321.2 32.6 352 30-386 55-437 (851)
73 COG1202 Superfamily II helicas 100.0 1.3E-33 2.9E-38 295.3 24.4 338 23-373 194-553 (830)
74 TIGR00603 rad25 DNA repair hel 100.0 3.3E-33 7.2E-38 312.6 27.9 318 45-386 255-622 (732)
75 COG1204 Superfamily II helicas 100.0 8.7E-33 1.9E-37 314.4 29.0 343 27-380 13-416 (766)
76 PRK11131 ATP-dependent RNA hel 100.0 8.8E-32 1.9E-36 314.6 32.9 303 49-377 78-415 (1294)
77 PRK13104 secA preprotein trans 100.0 8E-30 1.7E-34 287.3 40.1 320 41-374 79-588 (896)
78 KOG0354 DEAD-box like helicase 100.0 4.5E-31 9.7E-36 290.1 27.8 343 30-380 47-536 (746)
79 cd00268 DEADc DEAD-box helicas 100.0 5.5E-31 1.2E-35 258.3 25.1 202 25-227 1-202 (203)
80 COG1198 PriA Primosomal protei 100.0 2.7E-31 5.8E-36 296.7 24.6 411 26-451 157-704 (730)
81 PRK12899 secA preprotein trans 100.0 1.9E-29 4.2E-34 283.5 39.4 148 26-181 65-228 (970)
82 PRK04914 ATP-dependent helicas 100.0 1.5E-29 3.2E-34 292.4 32.9 319 45-374 152-604 (956)
83 TIGR01967 DEAH_box_HrpA ATP-de 100.0 8.3E-30 1.8E-34 299.2 31.2 315 41-377 60-408 (1283)
84 PRK12904 preprotein translocas 100.0 3E-28 6.6E-33 274.5 40.5 319 41-374 78-574 (830)
85 PRK09694 helicase Cas3; Provis 100.0 3.4E-29 7.4E-34 287.8 32.5 312 44-362 285-664 (878)
86 COG1200 RecG RecG-like helicas 100.0 1.3E-28 2.9E-33 267.0 34.9 334 19-374 236-592 (677)
87 KOG0351 ATP-dependent DNA heli 100.0 1.8E-29 4E-34 289.1 26.6 329 36-381 255-600 (941)
88 PRK12906 secA preprotein trans 100.0 1.8E-28 4E-33 275.2 28.3 320 41-374 77-554 (796)
89 KOG0352 ATP-dependent DNA heli 100.0 4.1E-29 8.8E-34 253.6 20.2 328 33-380 6-369 (641)
90 COG1061 SSL2 DNA or RNA helica 100.0 1.9E-28 4.1E-33 266.8 25.8 290 45-359 36-375 (442)
91 KOG0952 DNA/RNA helicase MER3/ 100.0 1.5E-27 3.1E-32 264.8 28.1 333 41-381 106-499 (1230)
92 COG1197 Mfd Transcription-repa 100.0 1.2E-26 2.7E-31 264.3 34.0 323 29-374 578-914 (1139)
93 PRK13107 preprotein translocas 100.0 3.7E-26 8E-31 257.0 36.2 320 41-374 79-592 (908)
94 KOG0353 ATP-dependent DNA heli 100.0 5.9E-27 1.3E-31 234.6 22.2 339 26-378 74-472 (695)
95 PRK11448 hsdR type I restricti 99.9 3.2E-25 6.9E-30 261.8 29.8 308 45-361 413-801 (1123)
96 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-25 4.1E-30 212.0 19.6 165 47-215 1-168 (169)
97 KOG0951 RNA helicase BRR2, DEA 99.9 9.5E-25 2.1E-29 245.0 26.6 341 30-381 296-710 (1674)
98 COG4098 comFA Superfamily II D 99.9 9.8E-24 2.1E-28 210.1 30.8 305 45-376 97-419 (441)
99 PLN03142 Probable chromatin-re 99.9 5.9E-23 1.3E-27 238.6 32.3 319 45-375 169-601 (1033)
100 COG4581 Superfamily II RNA hel 99.9 2.7E-23 5.8E-28 237.2 27.0 317 37-373 112-537 (1041)
101 KOG0947 Cytoplasmic exosomal R 99.9 3E-23 6.5E-28 228.2 25.8 313 41-373 294-723 (1248)
102 KOG0950 DNA polymerase theta/e 99.9 1.9E-23 4.1E-28 231.6 20.4 344 30-381 208-619 (1008)
103 COG1203 CRISPR-associated heli 99.9 7.4E-23 1.6E-27 235.7 25.0 328 46-378 196-555 (733)
104 COG1643 HrpA HrpA-like helicas 99.9 1.6E-21 3.5E-26 221.5 27.2 312 46-376 51-390 (845)
105 PRK12900 secA preprotein trans 99.9 2.3E-21 5.1E-26 219.2 28.2 127 247-375 579-713 (1025)
106 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-20 2.9E-25 221.2 34.5 333 30-373 231-814 (850)
107 KOG0948 Nuclear exosomal RNA h 99.9 3.2E-22 6.9E-27 215.4 18.3 308 45-373 129-539 (1041)
108 COG1110 Reverse gyrase [DNA re 99.9 1.4E-20 3.1E-25 209.7 30.5 280 41-344 79-416 (1187)
109 PRK12326 preprotein translocas 99.9 6E-20 1.3E-24 202.7 29.6 319 41-374 75-548 (764)
110 TIGR00631 uvrb excinuclease AB 99.9 3.2E-20 7E-25 209.7 28.0 132 249-381 425-561 (655)
111 KOG0922 DEAH-box RNA helicase 99.9 4.3E-20 9.3E-25 199.1 25.9 306 51-377 57-394 (674)
112 PRK05298 excinuclease ABC subu 99.8 1.7E-19 3.7E-24 205.2 27.2 143 250-393 430-586 (652)
113 PRK13103 secA preprotein trans 99.8 1.6E-18 3.5E-23 195.8 34.6 319 41-374 79-592 (913)
114 KOG0923 mRNA splicing factor A 99.8 1.5E-19 3.3E-24 192.9 23.1 308 46-373 266-606 (902)
115 TIGR00348 hsdR type I site-spe 99.8 7.2E-19 1.6E-23 200.8 29.8 314 45-372 238-650 (667)
116 smart00487 DEXDc DEAD-like hel 99.8 1.7E-19 3.7E-24 174.0 20.9 186 40-229 3-190 (201)
117 COG0556 UvrB Helicase subunit 99.8 8.2E-19 1.8E-23 184.1 24.3 166 199-372 386-556 (663)
118 PRK14873 primosome assembly pr 99.8 1.6E-19 3.4E-24 203.7 20.3 333 66-427 166-606 (665)
119 PRK07246 bifunctional ATP-depe 99.8 6.2E-18 1.3E-22 196.4 32.1 320 38-373 239-783 (820)
120 PRK12903 secA preprotein trans 99.8 4.7E-18 1E-22 190.2 28.1 319 41-374 75-540 (925)
121 KOG0924 mRNA splicing factor A 99.8 1.7E-18 3.6E-23 185.2 23.0 310 43-373 354-697 (1042)
122 COG4096 HsdR Type I site-speci 99.8 4.7E-19 1E-23 195.2 18.3 297 44-360 164-525 (875)
123 KOG1123 RNA polymerase II tran 99.8 1E-19 2.2E-24 188.7 11.4 319 45-386 302-668 (776)
124 KOG0385 Chromatin remodeling c 99.8 6.9E-18 1.5E-22 183.0 24.9 321 45-376 167-602 (971)
125 KOG0920 ATP-dependent RNA heli 99.8 5.1E-18 1.1E-22 192.4 24.8 319 46-378 174-549 (924)
126 KOG0926 DEAH-box RNA helicase 99.8 1.6E-18 3.4E-23 188.2 18.8 299 52-373 263-704 (1172)
127 CHL00122 secA preprotein trans 99.8 6E-17 1.3E-21 182.5 26.3 279 41-333 73-491 (870)
128 KOG0387 Transcription-coupled 99.7 1.3E-16 2.8E-21 174.1 23.4 317 45-375 205-660 (923)
129 PRK12902 secA preprotein trans 99.7 5.7E-15 1.2E-19 166.3 36.4 279 41-333 82-506 (939)
130 KOG0925 mRNA splicing factor A 99.7 2.2E-16 4.7E-21 163.8 22.6 327 22-373 24-387 (699)
131 cd00079 HELICc Helicase superf 99.7 3.6E-17 7.8E-22 147.9 14.7 121 249-369 11-131 (131)
132 COG4889 Predicted helicase [Ge 99.7 5.3E-18 1.2E-22 185.1 7.5 323 38-370 154-585 (1518)
133 PRK08074 bifunctional ATP-depe 99.7 1.4E-14 3E-19 171.4 34.7 122 252-373 737-893 (928)
134 KOG0953 Mitochondrial RNA heli 99.7 2.6E-16 5.6E-21 165.9 15.6 278 62-389 193-489 (700)
135 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.6E-14 3.5E-19 161.4 30.9 79 265-345 469-561 (636)
136 cd00046 DEXDc DEAD-like helica 99.7 1E-15 2.2E-20 138.9 16.9 144 61-209 1-144 (144)
137 KOG1000 Chromatin remodeling p 99.7 4.2E-15 9.1E-20 154.7 23.3 316 43-373 196-603 (689)
138 KOG0390 DNA repair protein, SN 99.7 1.4E-14 3.1E-19 162.1 29.2 322 45-373 238-707 (776)
139 KOG0949 Predicted helicase, DE 99.7 2.1E-15 4.5E-20 167.3 22.1 167 45-218 511-682 (1330)
140 KOG0384 Chromodomain-helicase 99.7 1E-15 2.2E-20 173.6 19.7 317 44-375 369-813 (1373)
141 PF00271 Helicase_C: Helicase 99.7 1.6E-16 3.4E-21 131.0 8.6 78 284-361 1-78 (78)
142 KOG4150 Predicted ATP-dependen 99.6 6.1E-15 1.3E-19 155.2 17.9 344 39-388 280-657 (1034)
143 KOG0392 SNF2 family DNA-depend 99.6 3.6E-14 7.8E-19 160.6 23.5 343 23-374 932-1455(1549)
144 KOG0389 SNF2 family DNA-depend 99.6 2.6E-14 5.7E-19 156.1 19.8 322 45-376 399-891 (941)
145 PF04851 ResIII: Type III rest 99.6 5E-15 1.1E-19 141.9 12.5 153 45-210 3-183 (184)
146 PRK11747 dinG ATP-dependent DN 99.6 1.2E-12 2.6E-17 150.5 33.4 120 251-373 519-674 (697)
147 PRK12901 secA preprotein trans 99.6 6.4E-13 1.4E-17 151.3 30.3 125 247-374 609-742 (1112)
148 KOG0951 RNA helicase BRR2, DEA 99.5 9.9E-13 2.1E-17 149.5 25.5 320 44-389 1142-1507(1674)
149 TIGR02562 cas3_yersinia CRISPR 99.5 5.7E-13 1.2E-17 152.4 23.5 337 35-378 398-899 (1110)
150 smart00490 HELICc helicase sup 99.5 5.4E-14 1.2E-18 116.0 9.0 81 281-361 2-82 (82)
151 PF06862 DUF1253: Protein of u 99.5 9.5E-12 2.1E-16 132.9 27.9 288 92-379 36-421 (442)
152 COG1199 DinG Rad3-related DNA 99.5 9.9E-12 2.1E-16 143.3 29.1 118 252-372 464-616 (654)
153 TIGR00604 rad3 DNA repair heli 99.5 2.6E-11 5.6E-16 140.4 29.0 73 42-116 7-83 (705)
154 KOG0386 Chromatin remodeling c 99.4 5.1E-12 1.1E-16 141.5 13.2 320 45-375 394-840 (1157)
155 KOG1002 Nucleotide excision re 99.3 1.2E-10 2.5E-15 121.8 21.7 126 251-376 621-752 (791)
156 PF02399 Herpes_ori_bp: Origin 99.3 1.5E-10 3.3E-15 129.8 23.0 288 63-372 52-387 (824)
157 COG0653 SecA Preprotein transl 99.3 2.3E-09 5.1E-14 121.1 28.2 315 46-374 81-546 (822)
158 KOG0388 SNF2 family DNA-depend 99.2 5.8E-10 1.3E-14 120.8 20.0 124 251-374 1029-1155(1185)
159 COG0610 Type I site-specific r 99.2 2E-08 4.4E-13 118.8 33.6 298 61-371 274-651 (962)
160 KOG2340 Uncharacterized conser 99.2 7.9E-10 1.7E-14 116.8 19.2 335 43-378 214-673 (698)
161 COG0553 HepA Superfamily II DN 99.2 8E-10 1.7E-14 131.5 21.8 126 250-375 692-824 (866)
162 PF00176 SNF2_N: SNF2 family N 99.2 1.2E-10 2.5E-15 120.8 12.2 153 49-209 1-172 (299)
163 PF07652 Flavi_DEAD: Flaviviru 99.2 3.1E-11 6.7E-16 108.9 6.2 139 59-216 3-143 (148)
164 KOG0391 SNF2 family DNA-depend 99.2 4.8E-09 1E-13 118.9 24.5 124 253-376 1263-1390(1958)
165 KOG4439 RNA polymerase II tran 99.2 1.3E-09 2.7E-14 118.6 18.3 123 251-373 730-858 (901)
166 smart00488 DEXDc2 DEAD-like he 99.1 1.4E-09 3E-14 112.4 14.7 74 42-116 6-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.1 1.4E-09 3E-14 112.4 14.7 74 42-116 6-84 (289)
168 KOG1015 Transcription regulato 98.8 2.3E-07 5.1E-12 103.8 20.0 125 251-375 1127-1279(1567)
169 PF07517 SecA_DEAD: SecA DEAD- 98.6 6.1E-07 1.3E-11 90.8 14.2 131 41-181 74-210 (266)
170 KOG0921 Dosage compensation co 98.6 1.2E-06 2.7E-11 97.9 16.9 304 55-372 388-773 (1282)
171 PRK15483 type III restriction- 98.5 6.6E-07 1.4E-11 103.8 13.4 143 62-211 61-240 (986)
172 TIGR00596 rad1 DNA repair prot 98.3 2.4E-05 5.1E-10 90.9 17.6 69 141-210 5-73 (814)
173 PF13086 AAA_11: AAA domain; P 98.2 3.4E-06 7.4E-11 83.7 8.9 70 45-115 1-75 (236)
174 COG3587 Restriction endonuclea 98.2 7.7E-05 1.7E-09 84.0 19.7 72 316-387 483-567 (985)
175 PF13604 AAA_30: AAA domain; P 98.2 1.1E-05 2.5E-10 78.5 10.2 124 45-208 1-130 (196)
176 TIGR00376 DNA helicase, putati 98.1 0.00046 1E-08 79.0 23.1 66 45-115 157-223 (637)
177 PF02562 PhoH: PhoH-like prote 98.1 8.5E-06 1.8E-10 79.3 7.3 139 44-208 3-155 (205)
178 KOG0952 DNA/RNA helicase MER3/ 98.0 3.8E-06 8.1E-11 95.9 4.2 133 45-183 927-1061(1230)
179 KOG1016 Predicted DNA helicase 98.0 0.00028 6.1E-09 78.3 17.5 109 266-374 719-850 (1387)
180 PRK10536 hypothetical protein; 97.9 0.00013 2.8E-09 73.2 13.1 142 41-205 55-209 (262)
181 KOG1802 RNA helicase nonsense 97.9 0.00039 8.5E-09 76.3 16.0 85 37-129 402-486 (935)
182 PF13307 Helicase_C_2: Helicas 97.9 4.5E-05 9.8E-10 72.4 7.9 106 265-372 8-149 (167)
183 PF09848 DUF2075: Uncharacteri 97.8 5.7E-05 1.2E-09 80.6 9.1 107 63-195 4-117 (352)
184 PF13872 AAA_34: P-loop contai 97.8 0.00011 2.4E-09 74.9 9.9 174 26-215 24-226 (303)
185 TIGR01448 recD_rel helicase, p 97.8 0.00039 8.4E-09 80.8 15.1 129 41-208 320-452 (720)
186 PF13245 AAA_19: Part of AAA d 97.7 0.00014 3.1E-09 59.3 7.7 60 53-113 2-62 (76)
187 PRK10875 recD exonuclease V su 97.7 0.00036 7.8E-09 79.2 13.0 144 46-208 153-301 (615)
188 PF12340 DUF3638: Protein of u 97.7 0.00074 1.6E-08 66.5 12.9 153 23-182 3-186 (229)
189 TIGR01447 recD exodeoxyribonuc 97.6 0.00076 1.6E-08 76.4 14.2 142 47-207 147-294 (586)
190 KOG1803 DNA helicase [Replicat 97.6 0.00018 3.8E-09 78.6 7.7 63 45-112 185-248 (649)
191 KOG1001 Helicase-like transcri 97.5 0.00075 1.6E-08 77.0 12.1 100 268-367 541-642 (674)
192 PRK13889 conjugal transfer rel 97.5 0.0018 3.8E-08 77.0 15.1 127 40-208 342-470 (988)
193 KOG1132 Helicase of the DEAD s 97.4 0.001 2.2E-08 75.5 11.1 134 45-181 21-260 (945)
194 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0033 7.1E-08 73.5 15.5 135 30-206 338-474 (744)
195 PRK14722 flhF flagellar biosyn 97.2 0.0049 1.1E-07 65.7 13.6 130 60-220 137-269 (374)
196 TIGR02760 TraI_TIGR conjugativ 97.2 0.023 4.9E-07 72.9 21.6 210 45-288 429-648 (1960)
197 PF13401 AAA_22: AAA domain; P 97.2 0.0015 3.3E-08 58.6 8.3 19 60-78 4-22 (131)
198 PRK13826 Dtr system oriT relax 97.2 0.0047 1E-07 73.9 14.4 138 29-208 366-505 (1102)
199 PF00580 UvrD-helicase: UvrD/R 97.1 0.0011 2.4E-08 68.8 7.7 124 46-178 1-125 (315)
200 PRK12723 flagellar biosynthesi 97.1 0.013 2.8E-07 63.0 15.4 130 61-220 175-309 (388)
201 PRK04296 thymidine kinase; Pro 97.1 0.0016 3.4E-08 63.2 7.3 109 61-208 3-114 (190)
202 PRK06526 transposase; Provisio 97.0 0.0029 6.3E-08 64.2 9.3 112 55-213 93-205 (254)
203 PRK14974 cell division protein 97.0 0.01 2.2E-07 62.5 13.0 130 62-220 142-275 (336)
204 PRK08181 transposase; Validate 96.9 0.018 4E-07 58.8 14.0 123 46-215 88-215 (269)
205 KOG1805 DNA replication helica 96.9 0.0066 1.4E-07 69.8 11.4 138 27-182 655-810 (1100)
206 cd00009 AAA The AAA+ (ATPases 96.9 0.011 2.5E-07 53.1 10.9 18 60-77 19-36 (151)
207 PRK11889 flhF flagellar biosyn 96.7 0.019 4E-07 61.3 12.7 128 61-220 242-374 (436)
208 PRK05703 flhF flagellar biosyn 96.7 0.07 1.5E-06 58.3 17.6 129 60-220 221-354 (424)
209 COG1875 NYN ribonuclease and A 96.7 0.0043 9.2E-08 64.5 7.1 143 41-206 224-385 (436)
210 PF05970 PIF1: PIF1-like helic 96.6 0.0074 1.6E-07 64.7 9.2 60 45-109 1-66 (364)
211 smart00382 AAA ATPases associa 96.6 0.0074 1.6E-07 53.8 7.9 42 60-106 2-43 (148)
212 PF14617 CMS1: U3-containing 9 96.6 0.0051 1.1E-07 61.8 7.3 87 91-179 124-212 (252)
213 PF00448 SRP54: SRP54-type pro 96.5 0.017 3.6E-07 56.3 9.8 124 63-215 4-131 (196)
214 PRK07952 DNA replication prote 96.5 0.062 1.4E-06 54.1 14.0 110 61-215 100-211 (244)
215 PF13871 Helicase_C_4: Helicas 96.4 0.0076 1.6E-07 61.4 7.2 67 307-373 52-127 (278)
216 COG1419 FlhF Flagellar GTP-bin 96.2 0.085 1.9E-06 56.2 13.8 130 60-219 203-334 (407)
217 PRK13709 conjugal transfer nic 96.2 0.044 9.4E-07 68.9 13.3 64 45-109 967-1032(1747)
218 smart00492 HELICc3 helicase su 96.2 0.049 1.1E-06 50.1 10.4 46 299-344 30-78 (141)
219 PRK14723 flhF flagellar biosyn 96.2 0.073 1.6E-06 61.6 14.0 126 61-220 186-317 (767)
220 smart00491 HELICc2 helicase su 96.1 0.039 8.4E-07 50.8 9.4 41 304-344 32-79 (142)
221 PRK12727 flagellar biosynthesi 96.1 0.2 4.2E-06 55.7 16.1 128 59-219 349-480 (559)
222 PRK14712 conjugal transfer nic 96.1 0.051 1.1E-06 67.4 12.8 62 45-109 835-900 (1623)
223 PRK08727 hypothetical protein; 96.0 0.049 1.1E-06 54.6 10.6 47 167-213 92-140 (233)
224 cd01120 RecA-like_NTPases RecA 96.0 0.086 1.9E-06 48.6 11.6 39 63-106 2-40 (165)
225 cd01124 KaiC KaiC is a circadi 96.0 0.072 1.6E-06 50.9 11.1 49 63-117 2-50 (187)
226 PRK05642 DNA replication initi 95.9 0.05 1.1E-06 54.5 10.2 45 167-211 96-141 (234)
227 PRK08116 hypothetical protein; 95.9 0.15 3.3E-06 52.2 13.6 110 61-215 115-227 (268)
228 PRK06921 hypothetical protein; 95.8 0.21 4.5E-06 51.1 14.3 45 59-108 116-160 (266)
229 PRK06731 flhF flagellar biosyn 95.8 0.15 3.2E-06 52.2 12.9 128 61-220 76-208 (270)
230 COG3421 Uncharacterized protei 95.8 0.0089 1.9E-07 65.5 4.2 142 66-212 3-168 (812)
231 PHA02533 17 large terminase pr 95.7 0.083 1.8E-06 59.3 11.6 148 45-209 59-210 (534)
232 KOG1131 RNA polymerase II tran 95.7 0.069 1.5E-06 57.8 10.2 73 42-115 13-89 (755)
233 PRK06893 DNA replication initi 95.7 0.054 1.2E-06 54.1 9.1 46 167-212 90-137 (229)
234 COG3973 Superfamily I DNA and 95.7 0.06 1.3E-06 59.5 9.8 91 26-117 185-284 (747)
235 PRK11331 5-methylcytosine-spec 95.6 0.065 1.4E-06 58.3 10.1 33 46-78 180-212 (459)
236 COG2805 PilT Tfp pilus assembl 95.6 0.078 1.7E-06 54.1 9.8 120 63-200 128-250 (353)
237 PRK00771 signal recognition pa 95.6 0.088 1.9E-06 57.5 11.0 127 62-219 97-227 (437)
238 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.09 2E-06 52.0 10.0 42 169-210 91-133 (226)
239 PRK08084 DNA replication initi 95.5 0.11 2.4E-06 52.1 10.6 43 169-211 98-142 (235)
240 PRK05580 primosome assembly pr 95.5 0.085 1.9E-06 61.2 11.0 93 249-342 173-266 (679)
241 TIGR01547 phage_term_2 phage t 95.4 0.035 7.6E-07 60.2 7.3 136 62-212 3-143 (396)
242 COG1484 DnaC DNA replication p 95.4 0.08 1.7E-06 53.8 9.4 72 36-113 74-152 (254)
243 PRK00149 dnaA chromosomal repl 95.4 0.11 2.4E-06 57.4 11.2 109 61-214 149-259 (450)
244 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.29 6.4E-06 45.8 12.3 131 63-219 5-148 (159)
245 PRK12377 putative replication 95.3 0.32 6.8E-06 49.2 13.3 107 61-213 102-210 (248)
246 PRK14721 flhF flagellar biosyn 95.3 0.34 7.4E-06 52.6 14.3 131 60-220 191-323 (420)
247 PRK06835 DNA replication prote 95.3 0.53 1.2E-05 49.6 15.3 112 59-215 182-295 (329)
248 PRK09183 transposase/IS protei 95.3 0.12 2.6E-06 52.6 10.2 46 57-108 99-144 (259)
249 PRK11054 helD DNA helicase IV; 95.2 0.074 1.6E-06 61.6 9.5 70 44-116 195-264 (684)
250 TIGR00595 priA primosomal prot 95.2 0.1 2.2E-06 58.5 10.3 93 249-342 8-101 (505)
251 KOG0298 DEAD box-containing he 95.2 0.049 1.1E-06 64.6 7.9 152 60-216 374-557 (1394)
252 CHL00181 cbbX CbbX; Provisiona 95.2 0.27 5.9E-06 50.9 12.7 21 60-80 59-79 (287)
253 TIGR01425 SRP54_euk signal rec 95.2 0.14 3E-06 55.7 10.8 130 63-220 103-235 (429)
254 KOG0989 Replication factor C, 95.1 0.067 1.5E-06 54.6 7.6 46 163-209 124-169 (346)
255 PF00004 AAA: ATPase family as 95.1 0.041 8.9E-07 49.1 5.5 15 63-77 1-15 (132)
256 COG1444 Predicted P-loop ATPas 95.1 0.091 2E-06 60.3 9.4 150 34-209 203-356 (758)
257 PRK14873 primosome assembly pr 95.1 0.14 3E-06 59.0 10.9 94 248-342 170-265 (665)
258 PRK05986 cob(I)alamin adenolsy 95.0 0.36 7.7E-06 46.6 11.9 146 58-219 20-168 (191)
259 TIGR00064 ftsY signal recognit 95.0 0.38 8.1E-06 49.4 13.0 132 61-220 73-213 (272)
260 cd01122 GP4d_helicase GP4d_hel 95.0 0.07 1.5E-06 54.5 7.7 66 33-102 3-68 (271)
261 TIGR00362 DnaA chromosomal rep 95.0 0.16 3.5E-06 55.3 10.8 108 62-214 138-247 (405)
262 PRK08903 DnaA regulatory inact 95.0 0.15 3.2E-06 50.7 9.8 43 168-211 90-133 (227)
263 TIGR02760 TraI_TIGR conjugativ 95.0 0.14 3.1E-06 65.9 11.8 61 45-109 1019-1084(1960)
264 PF01695 IstB_IS21: IstB-like 95.0 0.056 1.2E-06 51.8 6.4 46 58-109 45-90 (178)
265 PRK10917 ATP-dependent DNA hel 94.9 0.1 2.2E-06 60.7 9.6 93 249-341 293-390 (681)
266 PF05127 Helicase_RecD: Helica 94.9 0.0092 2E-07 56.8 0.8 123 64-209 1-123 (177)
267 PRK12726 flagellar biosynthesi 94.9 0.45 9.7E-06 50.8 13.3 128 60-219 206-338 (407)
268 PHA02544 44 clamp loader, smal 94.9 0.13 2.7E-06 53.9 9.4 39 168-206 100-138 (316)
269 PRK10919 ATP-dependent DNA hel 94.9 0.055 1.2E-06 62.8 7.2 69 45-116 2-70 (672)
270 PF03354 Terminase_1: Phage Te 94.9 0.1 2.3E-06 58.0 9.2 149 48-206 1-160 (477)
271 PRK14087 dnaA chromosomal repl 94.9 0.25 5.3E-06 54.5 11.9 109 61-212 142-252 (450)
272 TIGR03015 pepcterm_ATPase puta 94.6 0.42 9.1E-06 48.6 12.3 34 45-78 23-61 (269)
273 TIGR03499 FlhF flagellar biosy 94.6 0.18 3.8E-06 52.1 9.4 21 61-81 195-215 (282)
274 TIGR02881 spore_V_K stage V sp 94.6 0.35 7.5E-06 49.3 11.4 18 61-78 43-60 (261)
275 PRK08533 flagellar accessory p 94.5 0.3 6.5E-06 48.8 10.6 54 58-117 22-75 (230)
276 COG4962 CpaF Flp pilus assembl 94.5 0.082 1.8E-06 55.1 6.5 73 30-108 142-215 (355)
277 PF05876 Terminase_GpA: Phage 94.3 0.085 1.8E-06 59.7 6.7 125 45-181 16-147 (557)
278 TIGR01074 rep ATP-dependent DN 94.3 0.1 2.2E-06 60.6 7.6 68 46-116 2-69 (664)
279 PRK05707 DNA polymerase III su 94.3 0.24 5.2E-06 52.3 9.6 37 46-82 4-44 (328)
280 TIGR02880 cbbX_cfxQ probable R 94.3 0.54 1.2E-05 48.6 12.1 19 60-78 58-76 (284)
281 TIGR00708 cobA cob(I)alamin ad 94.2 0.58 1.3E-05 44.4 11.2 130 63-219 8-150 (173)
282 PF00308 Bac_DnaA: Bacterial d 94.2 0.31 6.7E-06 48.3 9.8 107 62-213 36-144 (219)
283 TIGR01075 uvrD DNA helicase II 94.2 0.096 2.1E-06 61.4 7.1 71 44-117 3-73 (715)
284 PF13177 DNA_pol3_delta2: DNA 94.2 0.38 8.2E-06 45.3 9.9 43 167-210 101-143 (162)
285 PRK14088 dnaA chromosomal repl 94.2 0.41 8.8E-06 52.7 11.5 49 168-216 194-244 (440)
286 PLN03025 replication factor C 94.1 0.48 1E-05 49.8 11.7 39 168-208 99-137 (319)
287 PRK13894 conjugal transfer ATP 94.1 0.15 3.3E-06 53.5 7.7 67 35-106 124-191 (319)
288 PRK11773 uvrD DNA-dependent he 94.1 0.11 2.5E-06 60.8 7.5 70 45-117 9-78 (721)
289 PRK12724 flagellar biosynthesi 94.1 0.74 1.6E-05 49.9 12.9 125 62-220 225-356 (432)
290 PRK06995 flhF flagellar biosyn 94.1 0.19 4.2E-06 55.4 8.7 22 61-82 257-278 (484)
291 PRK08769 DNA polymerase III su 94.0 0.54 1.2E-05 49.3 11.6 40 43-82 2-48 (319)
292 PRK10867 signal recognition pa 94.0 0.54 1.2E-05 51.4 11.9 129 63-220 103-236 (433)
293 PF05729 NACHT: NACHT domain 94.0 0.42 9.1E-06 44.2 9.9 45 62-107 2-47 (166)
294 TIGR00643 recG ATP-dependent D 94.0 0.19 4.1E-06 58.0 8.9 92 250-341 268-364 (630)
295 PRK07003 DNA polymerase III su 93.9 0.43 9.2E-06 55.1 11.3 40 167-208 118-157 (830)
296 PRK13342 recombination factor 93.9 0.26 5.6E-06 53.8 9.4 17 62-78 38-54 (413)
297 COG1198 PriA Primosomal protei 93.9 0.16 3.6E-06 58.5 8.0 94 245-339 224-318 (730)
298 PRK12422 chromosomal replicati 93.9 0.43 9.4E-06 52.5 11.0 49 167-215 201-251 (445)
299 TIGR00959 ffh signal recogniti 93.9 0.64 1.4E-05 50.8 12.2 130 63-220 102-235 (428)
300 COG2256 MGS1 ATPase related to 93.7 0.2 4.3E-06 53.2 7.6 18 61-78 49-66 (436)
301 PRK13833 conjugal transfer pro 93.7 0.21 4.6E-06 52.4 7.9 65 37-106 122-187 (323)
302 PRK14956 DNA polymerase III su 93.6 0.42 9.1E-06 52.6 10.3 19 63-81 43-61 (484)
303 PRK14086 dnaA chromosomal repl 93.6 0.53 1.1E-05 53.4 11.3 49 166-214 375-425 (617)
304 KOG0991 Replication factor C, 93.6 0.14 3E-06 50.3 5.8 44 164-208 109-152 (333)
305 PRK12402 replication factor C 93.6 0.53 1.2E-05 49.5 11.0 40 167-208 124-163 (337)
306 COG1435 Tdk Thymidine kinase [ 93.6 0.46 1E-05 45.7 9.2 90 61-180 5-94 (201)
307 TIGR00580 mfd transcription-re 93.5 0.29 6.2E-06 58.6 9.5 92 250-341 484-580 (926)
308 PRK08939 primosomal protein Dn 93.5 0.79 1.7E-05 47.9 11.8 51 166-216 215-268 (306)
309 COG1200 RecG RecG-like helicas 93.5 0.32 6.8E-06 54.9 9.1 87 254-341 300-391 (677)
310 PRK05973 replicative DNA helic 93.4 0.22 4.9E-06 49.8 7.2 102 3-116 3-114 (237)
311 PTZ00112 origin recognition co 93.4 0.7 1.5E-05 54.1 11.8 41 167-208 868-909 (1164)
312 PRK14960 DNA polymerase III su 93.2 0.54 1.2E-05 53.6 10.5 41 167-209 117-157 (702)
313 PRK10416 signal recognition pa 93.2 1.1 2.5E-05 46.9 12.3 54 167-220 195-255 (318)
314 PRK07764 DNA polymerase III su 93.1 0.76 1.6E-05 54.3 12.0 42 167-210 119-160 (824)
315 PF06745 KaiC: KaiC; InterPro 93.1 0.28 6E-06 48.7 7.4 126 60-209 19-160 (226)
316 PRK04195 replication factor C 93.1 0.74 1.6E-05 51.3 11.5 19 60-78 39-57 (482)
317 PRK07994 DNA polymerase III su 93.0 0.77 1.7E-05 52.6 11.6 20 63-82 41-60 (647)
318 PTZ00293 thymidine kinase; Pro 93.0 0.62 1.3E-05 45.7 9.4 39 60-103 4-42 (211)
319 cd03115 SRP The signal recogni 93.0 2.9 6.4E-05 39.3 14.0 54 167-220 81-135 (173)
320 PRK00411 cdc6 cell division co 92.9 0.56 1.2E-05 50.7 10.0 36 61-99 56-91 (394)
321 TIGR02785 addA_Gpos recombinat 92.9 0.25 5.5E-06 61.3 8.0 67 45-115 1-67 (1232)
322 PRK14961 DNA polymerase III su 92.8 0.85 1.8E-05 48.9 11.1 18 63-80 41-58 (363)
323 COG1474 CDC6 Cdc6-related prot 92.8 1.5 3.3E-05 46.9 12.9 27 61-88 43-69 (366)
324 TIGR02928 orc1/cdc6 family rep 92.8 0.94 2E-05 48.3 11.5 25 61-86 41-65 (365)
325 TIGR03877 thermo_KaiC_1 KaiC d 92.7 1.1 2.3E-05 45.0 11.0 52 60-117 21-72 (237)
326 PRK11823 DNA repair protein Ra 92.7 0.54 1.2E-05 51.8 9.5 59 53-117 68-131 (446)
327 COG0552 FtsY Signal recognitio 92.7 0.95 2.1E-05 47.1 10.6 127 63-219 142-279 (340)
328 PHA03333 putative ATPase subun 92.7 2.4 5.2E-05 48.4 14.5 148 46-209 170-332 (752)
329 PRK13341 recombination factor 92.6 0.51 1.1E-05 55.0 9.6 40 168-212 109-148 (725)
330 TIGR03881 KaiC_arch_4 KaiC dom 92.6 1.1 2.4E-05 44.4 10.9 52 59-116 19-70 (229)
331 TIGR02782 TrbB_P P-type conjug 92.6 0.53 1.2E-05 49.0 8.8 67 35-106 108-175 (299)
332 COG0470 HolB ATPase involved i 92.5 0.36 7.7E-06 50.4 7.6 26 60-85 23-49 (325)
333 PRK12323 DNA polymerase III su 92.5 0.7 1.5E-05 52.6 10.1 40 166-206 122-161 (700)
334 PF03796 DnaB_C: DnaB-like hel 92.5 0.56 1.2E-05 47.6 8.8 138 60-208 19-179 (259)
335 PRK08691 DNA polymerase III su 92.5 0.85 1.8E-05 52.4 10.8 39 167-206 118-156 (709)
336 PRK09111 DNA polymerase III su 92.4 0.9 1.9E-05 51.9 11.0 40 166-206 130-169 (598)
337 PRK14958 DNA polymerase III su 92.4 0.57 1.2E-05 52.5 9.3 39 167-206 118-156 (509)
338 cd00984 DnaB_C DnaB helicase C 92.3 0.89 1.9E-05 45.4 9.9 39 59-101 12-50 (242)
339 cd01121 Sms Sms (bacterial rad 92.2 0.86 1.9E-05 48.9 10.0 59 53-117 70-133 (372)
340 PF13173 AAA_14: AAA domain 92.2 1.2 2.6E-05 39.9 9.6 37 168-208 61-97 (128)
341 PF05496 RuvB_N: Holliday junc 92.2 0.43 9.3E-06 47.2 7.0 17 62-78 52-68 (233)
342 TIGR01073 pcrA ATP-dependent D 92.1 0.3 6.5E-06 57.4 7.0 71 44-117 3-73 (726)
343 PRK06904 replicative DNA helic 92.1 1.9 4E-05 48.0 12.8 118 58-183 219-349 (472)
344 TIGR03600 phage_DnaB phage rep 91.9 2 4.3E-05 47.0 12.8 41 57-101 191-231 (421)
345 PRK14964 DNA polymerase III su 91.9 1.5 3.3E-05 48.6 11.8 22 61-82 36-57 (491)
346 KOG0742 AAA+-type ATPase [Post 91.9 0.3 6.5E-06 51.7 5.8 129 22-211 351-495 (630)
347 PRK14950 DNA polymerase III su 91.8 1.5 3.3E-05 50.1 12.1 20 62-81 40-59 (585)
348 KOG0738 AAA+-type ATPase [Post 91.7 0.21 4.6E-06 52.6 4.5 59 19-77 179-262 (491)
349 PTZ00454 26S protease regulato 91.6 0.59 1.3E-05 50.7 8.1 56 19-77 138-196 (398)
350 PRK10689 transcription-repair 91.5 0.71 1.5E-05 56.6 9.4 92 249-340 632-728 (1147)
351 TIGR03689 pup_AAA proteasome A 91.5 0.6 1.3E-05 52.1 8.0 51 22-76 178-232 (512)
352 PRK14955 DNA polymerase III su 91.4 1.2 2.6E-05 48.4 10.1 21 62-82 40-60 (397)
353 COG0593 DnaA ATPase involved i 91.3 1 2.2E-05 48.7 9.3 47 168-214 175-223 (408)
354 PRK08699 DNA polymerase III su 91.3 1.3 2.8E-05 46.7 10.1 37 46-82 2-43 (325)
355 PF02572 CobA_CobO_BtuR: ATP:c 91.2 1.3 2.9E-05 42.0 9.1 141 63-219 6-149 (172)
356 PRK13851 type IV secretion sys 91.2 0.28 6.2E-06 52.0 5.0 45 56-106 158-202 (344)
357 PRK06067 flagellar accessory p 91.2 2.2 4.8E-05 42.5 11.3 52 60-117 25-76 (234)
358 PRK14949 DNA polymerase III su 91.2 1.2 2.6E-05 52.5 10.3 43 167-211 118-160 (944)
359 PRK11034 clpA ATP-dependent Cl 91.2 1.3 2.9E-05 51.9 10.9 45 169-213 279-327 (758)
360 TIGR02688 conserved hypothetic 91.2 0.79 1.7E-05 49.5 8.3 49 30-78 172-227 (449)
361 PRK09112 DNA polymerase III su 91.2 1.2 2.5E-05 47.6 9.6 40 166-206 139-178 (351)
362 COG4626 Phage terminase-like p 91.2 1.5 3.3E-05 48.6 10.6 146 45-207 61-223 (546)
363 PRK06645 DNA polymerase III su 91.0 2.2 4.8E-05 47.7 11.9 21 62-82 45-65 (507)
364 PRK10436 hypothetical protein; 90.9 0.68 1.5E-05 51.1 7.8 53 47-104 203-257 (462)
365 TIGR03878 thermo_KaiC_2 KaiC d 90.8 1.2 2.5E-05 45.5 8.8 39 59-102 35-73 (259)
366 KOG0741 AAA+-type ATPase [Post 90.6 1.4 3.1E-05 48.3 9.5 70 27-103 493-574 (744)
367 PRK14951 DNA polymerase III su 90.6 1.3 2.7E-05 50.8 9.7 43 167-211 123-165 (618)
368 PRK14952 DNA polymerase III su 90.6 2.1 4.5E-05 48.8 11.4 44 166-211 116-159 (584)
369 PRK06964 DNA polymerase III su 90.5 1.6 3.5E-05 46.2 9.9 40 46-85 2-46 (342)
370 PRK13900 type IV secretion sys 90.4 0.71 1.5E-05 48.8 7.1 45 57-107 157-201 (332)
371 PRK07940 DNA polymerase III su 90.4 2 4.4E-05 46.5 10.8 45 166-212 115-159 (394)
372 PRK13764 ATPase; Provisional 90.3 0.56 1.2E-05 53.2 6.6 42 59-105 256-297 (602)
373 COG2804 PulE Type II secretory 90.3 0.42 9.1E-06 52.3 5.4 40 47-87 243-284 (500)
374 PRK14962 DNA polymerase III su 90.3 2.9 6.2E-05 46.5 12.0 18 63-80 39-56 (472)
375 PRK14957 DNA polymerase III su 90.3 2.6 5.7E-05 47.5 11.8 39 167-206 118-156 (546)
376 PRK14969 DNA polymerase III su 90.3 1.5 3.2E-05 49.5 9.9 39 167-206 118-156 (527)
377 COG0541 Ffh Signal recognition 90.3 1.4 3.1E-05 47.4 9.1 130 63-220 103-235 (451)
378 PF01443 Viral_helicase1: Vira 90.3 0.33 7.2E-06 48.1 4.3 23 320-342 184-206 (234)
379 TIGR02538 type_IV_pilB type IV 90.2 0.87 1.9E-05 51.8 8.1 59 38-104 295-355 (564)
380 TIGR02524 dot_icm_DotB Dot/Icm 90.1 0.69 1.5E-05 49.4 6.8 27 59-86 133-159 (358)
381 PF00437 T2SE: Type II/IV secr 90.1 0.89 1.9E-05 46.4 7.4 53 50-107 116-169 (270)
382 KOG2543 Origin recognition com 90.1 3.1 6.6E-05 44.1 11.1 138 46-212 10-161 (438)
383 PRK00440 rfc replication facto 90.0 3.3 7.2E-05 43.0 11.9 38 168-206 102-139 (319)
384 KOG0732 AAA+-type ATPase conta 90.0 0.49 1.1E-05 56.2 5.9 138 22-209 261-414 (1080)
385 KOG1513 Nuclear helicase MOP-3 90.0 0.34 7.4E-06 55.0 4.4 64 309-372 850-922 (1300)
386 PRK14963 DNA polymerase III su 90.0 1.7 3.6E-05 48.7 9.9 18 63-80 39-56 (504)
387 KOG1133 Helicase of the DEAD s 90.0 0.44 9.5E-06 53.6 5.2 44 45-88 15-62 (821)
388 TIGR01243 CDC48 AAA family ATP 89.9 1.8 4E-05 50.9 10.8 53 21-76 173-228 (733)
389 PF03969 AFG1_ATPase: AFG1-lik 89.9 4.8 0.0001 43.1 12.9 45 167-212 126-171 (362)
390 cd01126 TraG_VirD4 The TraG/Tr 89.8 0.22 4.7E-06 53.8 2.7 48 62-116 1-48 (384)
391 PRK14965 DNA polymerase III su 89.8 1.8 4E-05 49.3 10.3 44 166-211 117-160 (576)
392 TIGR00678 holB DNA polymerase 89.7 2.1 4.7E-05 41.0 9.3 41 166-208 94-134 (188)
393 KOG2028 ATPase related to the 89.5 1.2 2.6E-05 46.7 7.6 44 61-109 163-206 (554)
394 COG4098 comFA Superfamily II D 89.5 1.7 3.6E-05 45.3 8.5 104 81-196 293-398 (441)
395 PRK05563 DNA polymerase III su 89.5 2.5 5.4E-05 48.0 11.0 20 62-81 40-59 (559)
396 COG3972 Superfamily I DNA and 89.4 1.2 2.6E-05 48.4 7.8 140 33-179 151-306 (660)
397 PRK14959 DNA polymerase III su 89.4 1.8 3.8E-05 49.4 9.6 21 62-82 40-60 (624)
398 COG2909 MalT ATP-dependent tra 89.3 0.92 2E-05 52.5 7.2 44 168-211 129-172 (894)
399 COG3267 ExeA Type II secretory 89.3 1.5 3.2E-05 44.1 7.8 76 24-109 15-94 (269)
400 PRK07471 DNA polymerase III su 89.3 2.4 5.2E-05 45.4 10.2 42 166-208 139-180 (365)
401 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.3 1.7 3.6E-05 39.9 7.9 47 166-215 86-132 (144)
402 cd01128 rho_factor Transcripti 89.2 2.5 5.5E-05 42.7 9.7 20 57-76 13-32 (249)
403 COG1197 Mfd Transcription-repa 89.1 1.5 3.3E-05 52.6 9.0 90 250-339 627-721 (1139)
404 PF02534 T4SS-DNA_transf: Type 88.9 0.39 8.4E-06 53.3 4.0 50 61-117 45-94 (469)
405 TIGR00631 uvrb excinuclease AB 88.9 6.9 0.00015 45.3 14.2 112 92-214 441-558 (655)
406 TIGR02639 ClpA ATP-dependent C 88.9 4.4 9.6E-05 47.7 12.9 18 61-78 204-221 (731)
407 cd01130 VirB11-like_ATPase Typ 88.9 0.65 1.4E-05 44.6 5.0 38 38-77 4-42 (186)
408 PF05707 Zot: Zonular occluden 88.8 1.2 2.5E-05 43.2 6.8 24 63-86 3-27 (193)
409 TIGR02525 plasmid_TraJ plasmid 88.8 0.97 2.1E-05 48.5 6.7 43 60-105 149-191 (372)
410 PRK14954 DNA polymerase III su 88.8 4.2 9.1E-05 46.7 12.2 21 62-82 40-60 (620)
411 PHA00729 NTP-binding motif con 88.8 3.9 8.4E-05 40.6 10.4 75 144-219 59-138 (226)
412 PRK05896 DNA polymerase III su 88.8 4 8.7E-05 46.4 11.8 21 61-81 39-59 (605)
413 PF06733 DEAD_2: DEAD_2; Inte 88.8 0.22 4.8E-06 47.4 1.6 45 138-182 114-159 (174)
414 TIGR01243 CDC48 AAA family ATP 88.8 0.69 1.5E-05 54.4 6.1 53 23-78 450-505 (733)
415 TIGR02868 CydC thiol reductant 88.6 1.3 2.9E-05 49.9 8.1 40 166-205 486-525 (529)
416 PF03237 Terminase_6: Terminas 88.6 4.9 0.00011 42.3 12.1 144 64-223 1-153 (384)
417 PRK14948 DNA polymerase III su 88.6 2.6 5.5E-05 48.5 10.3 22 61-82 39-60 (620)
418 PRK13897 type IV secretion sys 88.5 0.3 6.6E-06 55.6 2.8 50 61-117 159-208 (606)
419 TIGR02533 type_II_gspE general 88.5 1.6 3.4E-05 48.7 8.4 44 38-85 221-266 (486)
420 PRK03992 proteasome-activating 88.4 1.1 2.3E-05 48.6 6.9 18 61-78 166-183 (389)
421 PRK09087 hypothetical protein; 88.4 1.7 3.7E-05 43.3 7.8 41 170-212 89-130 (226)
422 CHL00176 ftsH cell division pr 88.4 1.5 3.2E-05 50.6 8.2 18 61-78 217-234 (638)
423 COG0513 SrmB Superfamily II DN 88.4 2 4.3E-05 48.4 9.2 67 269-339 102-179 (513)
424 PF05621 TniB: Bacterial TniB 88.4 0.7 1.5E-05 47.7 5.1 42 167-208 144-188 (302)
425 PRK04841 transcriptional regul 88.4 2.6 5.7E-05 50.7 10.9 43 169-211 122-164 (903)
426 TIGR00665 DnaB replicative DNA 88.4 3.8 8.2E-05 45.0 11.3 112 60-181 195-318 (434)
427 PRK08840 replicative DNA helic 88.3 5.2 0.00011 44.3 12.3 122 52-181 209-342 (464)
428 COG2109 BtuR ATP:corrinoid ade 88.1 2.3 5E-05 40.7 7.9 143 63-220 31-176 (198)
429 PRK07414 cob(I)yrinic acid a,c 88.0 1.4 3.1E-05 41.9 6.5 133 63-218 24-167 (178)
430 PRK06871 DNA polymerase III su 87.9 3.2 6.9E-05 43.7 9.7 36 47-82 4-46 (325)
431 TIGR02858 spore_III_AA stage I 87.9 3.9 8.4E-05 41.9 10.2 25 52-76 100-127 (270)
432 PHA03368 DNA packaging termina 87.9 1.9 4.2E-05 49.0 8.4 133 61-210 255-391 (738)
433 TIGR00763 lon ATP-dependent pr 87.9 2.2 4.7E-05 50.6 9.4 19 60-78 347-365 (775)
434 COG1618 Predicted nucleotide k 87.8 0.33 7.1E-06 45.2 2.0 117 61-195 6-129 (179)
435 PF12846 AAA_10: AAA-like doma 87.8 0.8 1.7E-05 47.0 5.2 42 61-107 2-43 (304)
436 PF01637 Arch_ATPase: Archaeal 87.7 0.64 1.4E-05 45.6 4.3 40 170-209 120-165 (234)
437 PF04364 DNA_pol3_chi: DNA pol 87.6 1.8 3.9E-05 39.5 6.8 114 240-375 3-116 (137)
438 COG1132 MdlB ABC-type multidru 87.6 1.6 3.4E-05 49.7 7.9 39 166-204 481-519 (567)
439 TIGR03880 KaiC_arch_3 KaiC dom 87.5 3 6.5E-05 41.2 8.9 52 60-117 16-67 (224)
440 PRK05748 replicative DNA helic 87.3 4.3 9.4E-05 44.8 10.9 113 59-181 202-327 (448)
441 KOG0701 dsRNA-specific nucleas 87.0 0.48 1E-05 58.7 3.3 94 268-361 294-399 (1606)
442 PHA00012 I assembly protein 86.9 11 0.00023 39.6 12.5 25 63-87 4-28 (361)
443 TIGR02655 circ_KaiC circadian 86.9 2.6 5.6E-05 47.0 8.9 60 52-117 250-314 (484)
444 PRK08451 DNA polymerase III su 86.9 2.8 6E-05 47.1 9.0 40 166-206 115-154 (535)
445 KOG1513 Nuclear helicase MOP-3 86.9 0.7 1.5E-05 52.7 4.2 154 45-209 264-454 (1300)
446 PF14516 AAA_35: AAA-like doma 86.8 5.6 0.00012 42.0 11.0 116 48-183 18-142 (331)
447 PRK08006 replicative DNA helic 86.7 7.5 0.00016 43.2 12.3 114 60-181 224-349 (471)
448 TIGR01420 pilT_fam pilus retra 86.7 1.4 3.1E-05 46.8 6.4 44 59-106 121-164 (343)
449 cd01129 PulE-GspE PulE/GspE Th 86.7 1.3 2.9E-05 45.2 6.0 61 37-105 58-120 (264)
450 PRK06305 DNA polymerase III su 86.6 3.6 7.8E-05 45.4 9.7 20 62-81 41-60 (451)
451 PRK08506 replicative DNA helic 86.6 4.3 9.3E-05 45.2 10.4 112 60-181 192-315 (472)
452 cd03276 ABC_SMC6_euk Eukaryoti 86.5 4.3 9.2E-05 39.5 9.2 47 166-212 129-178 (198)
453 cd01394 radB RadB. The archaea 86.5 2.8 6.2E-05 41.1 8.1 42 54-100 8-54 (218)
454 COG1110 Reverse gyrase [DNA re 86.4 2.4 5.2E-05 50.0 8.3 66 265-330 124-196 (1187)
455 TIGR02397 dnaX_nterm DNA polym 86.3 3.7 8.1E-05 43.5 9.5 17 62-78 38-54 (355)
456 TIGR00416 sms DNA repair prote 86.3 3.6 7.8E-05 45.5 9.5 59 53-117 82-145 (454)
457 PHA02535 P terminase ATPase su 86.2 7.6 0.00017 43.8 11.9 86 30-119 123-208 (581)
458 PRK13695 putative NTPase; Prov 85.9 6.5 0.00014 37.1 10.0 17 62-78 2-18 (174)
459 PRK10865 protein disaggregatio 85.9 2.1 4.5E-05 51.3 7.9 18 61-78 200-217 (857)
460 KOG0344 ATP-dependent RNA heli 85.9 11 0.00023 42.1 12.5 97 69-178 366-466 (593)
461 TIGR03743 SXT_TraD conjugative 85.9 1.7 3.8E-05 50.0 7.0 54 61-119 177-232 (634)
462 PHA00350 putative assembly pro 85.7 2.1 4.7E-05 46.1 7.2 25 63-87 4-29 (399)
463 PF10412 TrwB_AAD_bind: Type I 85.7 0.89 1.9E-05 49.1 4.4 49 55-108 10-58 (386)
464 cd03289 ABCC_CFTR2 The CFTR su 85.6 1.4 3E-05 45.3 5.5 42 166-208 154-195 (275)
465 TIGR03346 chaperone_ClpB ATP-d 85.6 5.7 0.00012 47.6 11.4 45 169-213 267-314 (852)
466 PRK13850 type IV secretion sys 85.5 0.56 1.2E-05 54.1 2.8 50 61-117 140-189 (670)
467 PRK07413 hypothetical protein; 85.5 6.3 0.00014 42.2 10.4 56 164-219 121-178 (382)
468 cd03239 ABC_SMC_head The struc 85.5 1 2.2E-05 43.0 4.2 42 167-208 115-157 (178)
469 COG1219 ClpX ATP-dependent pro 85.3 0.63 1.4E-05 48.0 2.7 19 60-78 97-115 (408)
470 PRK07004 replicative DNA helic 85.3 4 8.7E-05 45.2 9.3 114 59-181 212-337 (460)
471 KOG0331 ATP-dependent RNA heli 85.3 3.5 7.7E-05 45.7 8.7 73 91-174 339-415 (519)
472 PRK08760 replicative DNA helic 85.3 4.3 9.4E-05 45.1 9.6 112 60-181 229-352 (476)
473 PRK06090 DNA polymerase III su 85.3 4.1 8.9E-05 42.8 8.9 37 46-82 4-47 (319)
474 KOG1133 Helicase of the DEAD s 85.2 32 0.0007 39.4 15.9 103 240-344 602-719 (821)
475 PRK09354 recA recombinase A; P 85.2 5.8 0.00013 42.1 10.0 50 53-107 47-102 (349)
476 COG5008 PilU Tfp pilus assembl 85.0 6.4 0.00014 39.8 9.4 23 63-86 130-152 (375)
477 TIGR01241 FtsH_fam ATP-depende 84.8 1.8 3.8E-05 48.5 6.3 54 21-77 50-105 (495)
478 cd01125 repA Hexameric Replica 84.6 7.8 0.00017 38.7 10.3 52 63-114 4-65 (239)
479 TIGR03345 VI_ClpV1 type VI sec 84.3 4.4 9.5E-05 48.5 9.6 28 50-77 192-225 (852)
480 PRK13876 conjugal transfer cou 84.3 0.69 1.5E-05 53.3 2.8 50 61-117 145-194 (663)
481 COG2874 FlaH Predicted ATPases 84.2 12 0.00025 36.9 10.6 128 61-209 29-167 (235)
482 PRK09165 replicative DNA helic 84.2 6 0.00013 44.3 10.1 116 61-181 218-354 (497)
483 CHL00095 clpC Clp protease ATP 84.2 4.6 9.9E-05 48.2 9.7 19 61-79 201-219 (821)
484 PRK05636 replicative DNA helic 84.1 5.7 0.00012 44.5 9.9 109 61-181 266-388 (505)
485 PRK11776 ATP-dependent RNA hel 84.1 3.3 7.2E-05 45.8 8.1 72 267-342 73-155 (460)
486 PRK14971 DNA polymerase III su 84.1 7.6 0.00016 44.7 11.1 41 166-208 119-159 (614)
487 PRK07993 DNA polymerase III su 84.1 4.7 0.0001 42.6 8.8 37 46-82 3-46 (334)
488 PRK14701 reverse gyrase; Provi 84.1 3.7 8.1E-05 52.2 9.2 61 265-325 121-187 (1638)
489 cd03238 ABC_UvrA The excision 84.0 1.5 3.3E-05 41.8 4.6 41 166-206 103-145 (176)
490 COG0378 HypB Ni2+-binding GTPa 83.9 23 0.0005 34.3 12.4 33 187-219 163-195 (202)
491 TIGR03819 heli_sec_ATPase heli 83.8 2.5 5.4E-05 44.8 6.6 64 35-106 154-218 (340)
492 cd01127 TrwB Bacterial conjuga 83.8 0.86 1.9E-05 49.7 3.2 50 54-108 36-85 (410)
493 PRK04537 ATP-dependent RNA hel 83.8 6.8 0.00015 44.7 10.5 74 92-176 256-333 (572)
494 PRK07399 DNA polymerase III su 83.7 8.4 0.00018 40.4 10.4 40 166-207 122-161 (314)
495 PRK05595 replicative DNA helic 83.7 2.9 6.3E-05 46.1 7.3 39 60-102 201-239 (444)
496 COG2842 Uncharacterized ATPase 83.6 5 0.00011 41.2 8.3 110 55-208 89-201 (297)
497 COG2255 RuvB Holliday junction 83.4 2.6 5.5E-05 43.0 6.0 19 61-79 53-71 (332)
498 PF10593 Z1: Z1 domain; Inter 83.4 3.7 7.9E-05 41.3 7.3 66 317-382 136-202 (239)
499 PRK00080 ruvB Holliday junctio 83.2 2.6 5.6E-05 44.4 6.5 18 61-78 52-69 (328)
500 TIGR02767 TraG-Ti Ti-type conj 83.1 0.99 2.1E-05 51.7 3.4 50 61-117 212-261 (623)
No 1
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-102 Score=781.95 Aligned_cols=508 Identities=58% Similarity=0.870 Sum_probs=481.9
Q ss_pred hHHHHhhccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC
Q 007018 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP 90 (621)
Q Consensus 11 ~~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~ 90 (621)
...++++|++++|+|++|||+..++++|.+.||++|||+|+++||.||+++|++.+|.||||||.||++||+++|+.+.
T Consensus 9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence 3566677777789999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcc
Q 007018 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (621)
Q Consensus 91 ~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~ 170 (621)
+.|.+++|++|||+||.|+.++++++++++++++++++||+++++||..+..++|||++|||+++|+..++ .+.++.++
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sve 166 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVE 166 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-ecccccee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997 48999999
Q ss_pred eEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh
Q 007018 171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (621)
Q Consensus 171 ~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (621)
||||||||++++|||.+++++++.++|.++|+++||||+|..+.+|+++++.+|.+++++.+.++++.++..|+.++..+
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccC
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGl 330 (621)
|..+|++++...+. +.+++||++|++||+++...|+..|+.+..+||+|++.+|+..+.+|+.++..+||+||+++||+
T Consensus 247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999998865 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhHHHHHH
Q 007018 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (621)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 410 (621)
|||.+++|||||+|.+.+.|+||+||++|+|+.|++|++|.+.|.+|+.|++.|+++++...+...+...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~---------- 395 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC---------- 395 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999988776543321
Q ss_pred HHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCcc-CCCcccccc
Q 007018 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV 489 (621)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~ 489 (621)
....++|++|+.+.+.+.++.+.+++.+.+++.+.+.+.+|+.+|.+++|.||+||++|+|+++.. |+||.|...
T Consensus 396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~ 471 (529)
T KOG0337|consen 396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF 471 (529)
T ss_pred ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence 123589999999999999999999999999999999999999999999999999999999999765 999999988
Q ss_pred cccchHHHHHHHHHHhccCCccchhhhccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 007018 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552 (621)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (621)
.+..|.+...|+.++++||+++||||++. + ++| ||.+++..|.+++
T Consensus 472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~------------~---~~m--kr~k~~~ai~~rk 517 (529)
T KOG0337|consen 472 GENEEKEKLDILYKIKNYRSRETIFEINK------------S---DVM--KREKFEFAIIKRK 517 (529)
T ss_pred cchhhHHhhHHHHHHhhcccchhhhhhhh------------h---HHH--HhhhcchhHHHHH
Confidence 88888889999999999999999999973 1 489 8888988887664
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-78 Score=606.48 Aligned_cols=374 Identities=37% Similarity=0.613 Sum_probs=359.9
Q ss_pred cCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEE
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LI 98 (621)
.-...+|.+||+++.+++++...|++.||+||+++||.++.|+||++.|.||||||.+|++|++++|...+ ...++||
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lV 134 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--KLFFALV 134 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999998753 3589999
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
|+||||||.|+.+.++.++..+|+++++++||.++..|...+...|+|+|||||||++|+.+.+.+++..++++|+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHH
Q 007018 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (621)
+++++.|...+..|+..+|..+|++|||||+|+.+..+..+.+.+|..+.........+.+.+.|..++...|...|+++
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
+++.. +..+||||+||..+++++-+|+..|+.+..+||.|+|..|.-.+++|++|..+||||||+++||+|||.||+|
T Consensus 295 l~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~V 372 (476)
T KOG0330|consen 295 LNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVV 372 (476)
T ss_pred HHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEE
Confidence 99874 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHH
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~~ 396 (621)
||||+|.+.++|+||+||+||+|++|.+|+||+..|+..+..++..+++.+...+.++
T Consensus 373 VNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 373 VNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred EecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 9999999999999999999999999999999999999999999999999887665544
No 3
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-75 Score=593.85 Aligned_cols=425 Identities=36% Similarity=0.550 Sum_probs=363.8
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC---CCCeEE
Q 007018 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRA 96 (621)
Q Consensus 22 ~~~f~~l~--L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~---~~g~~~ 96 (621)
..+|++++ |+++++.++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+.+... .....+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 45788886 5699999999999999999999999999999999999999999999999999999954322 123579
Q ss_pred EEEcchHHHHHHHHHHHHHhhcc-CCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhh-cCCCCcCCcceEE
Q 007018 97 LILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVV 173 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~-~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~-~~~~~l~~l~~vV 173 (621)
|||+|||||+.|+.+++..|... .++.+.+++||.+.++....+ .++++|+|||||||.+++.+ +..+++.+++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998777 689999999999999988887 46899999999999999987 4456788999999
Q ss_pred EeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCC--CCCCceEEEEEcchhhH
Q 007018 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEK 251 (621)
Q Consensus 174 iDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~k 251 (621)
+||||++++|||...+..|+..+|+.|+|-|||||...++.++++++|+||+.+.+..... .+..+...|..|.+++|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765 67789999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccccc
Q 007018 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (621)
Q Consensus 252 ~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarG 329 (621)
...|+++|... ..++.|||++||..|+|++..|... ..++..+||.|.+.+|..++..|++....+|+||||+|||
T Consensus 243 ~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999875 6789999999999999999999875 6778999999999999999999999888999999999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhHHHHH
Q 007018 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409 (621)
Q Consensus 330 lDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~ 409 (621)
||||++|+||+||+|.+++.|+||+|||||+|+.|.+++|+.|.|..|...+.. ...|..+......
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i------~~~v~le~~~~e~------- 387 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI------KGKVELERIDTEK------- 387 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh------cCccchhhhcccc-------
Confidence 999999999999999999999999999999999999999999999888765432 1111111111000
Q ss_pred HHHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCccC
Q 007018 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481 (621)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~k~~~~~~ 481 (621)
++.. .-..++.++..+.++. .....||-.|.+.+..+...+|+|-|+|+..+
T Consensus 388 -----~~~~------------~~~~ir~~~~~DR~~~---dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~ 439 (567)
T KOG0345|consen 388 -----ASLS------------VYQDIRSIISKDRAVL---DKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGK 439 (567)
T ss_pred -----cchh------------HHHHHHHHhcccHHHH---hhhHHHHHHHHHHHhhcceeEEEeecCCcHHH
Confidence 0000 0112233333333332 33467788888888899999999999988643
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-75 Score=598.71 Aligned_cols=360 Identities=39% Similarity=0.635 Sum_probs=342.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCC-CCeEEEEEcc
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSP 101 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~-~g~~~LIL~P 101 (621)
.+|++|+||.++++++..+||..|||||..+||..+.|+|++++|.||||||+||++|++++|...+.+ ...|+|||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 389999999999999999999999999999999999999999999999999999999999999876543 3469999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|||||.|++.+.+.++.++++.+++++||-+...|...+..+|||+|+|||||.+|+.+.+.+.++++.++|+||||||+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch---hhHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYM 258 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---~~k~~~L~~~ 258 (621)
+.||..++.+|+..+|++||++|||||++..+.+++...|++|+.+.++......+.+.+.|+.+++ ..+...|..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988774 3466677777
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
+.... ...+|||+.|++.|..+..+|.-.|+.+..+||+|+|.+|...+.+|+..+++||||||+|+|||||++|..|
T Consensus 421 ~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 421 ITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 77665 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHH
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~ 384 (621)
|||+.|.+.+.|+||+||++|+|+.|.+++|+..+|...+..+...
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988877654
No 5
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-73 Score=604.65 Aligned_cols=370 Identities=37% Similarity=0.611 Sum_probs=345.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh----CCCCCeEEEEE
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALIL 99 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~----~~~~g~~~LIL 99 (621)
.|++++|++.+.+++...||..|||||.++||.++.|+|+++.|.||||||++|++|++.+|..+ ....++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999852 23458899999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||||||.|+...+.+++....+++.|++||.....|.+.+..+.+|+|||||||.+++.. ..++++++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 689999999999999999
Q ss_pred ccCCChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC--CCCCCCceEEEEEcchhhHHHHHH
Q 007018 180 LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALL 256 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~ 256 (621)
|++|||.+++..|+..+ ++.+|++++|||+|..+..++..++.+|..+.+... .....++.+....|....|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 666789999999999999999999999988887643 355567888888888888999999
Q ss_pred HHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 257 YMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 257 ~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
.+|.... ..++++||||+|+..|+.+...|+..++++..|||+.+|.+|..+|+.|++|++.|||||||||||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998875 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~ 394 (621)
++|||||+|.+.+.|+||+|||||+|+.|.+++|++..+......+...+.......|.
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~ 469 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPP 469 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCCh
Confidence 99999999999999999999999999999999999999999888888777666555543
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.3e-72 Score=580.26 Aligned_cols=421 Identities=33% Similarity=0.552 Sum_probs=370.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh--CCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~--~~~~g~~~LIL 99 (621)
...|++..||+.++++|.++||..+|++|+.+||.++.|+|+++.|.||||||+||++|+++.+... ....+..+|||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3468899999999999999999999999999999999999999999999999999999999998653 33568899999
Q ss_pred cchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
|||||||.|++.+++++..+. ++.+..++||.+.....+.+..+++|+|+|||||++|+.+.+.+-.++++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999998 9999999999998888888888999999999999999999888889999999999999
Q ss_pred cccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCC-CCceeeeccCC--CCCCCceEEEEEcchhhHHHHH
Q 007018 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT--KISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~--~~~~~~~~~~~~~~~~~k~~~L 255 (621)
+++++||.+.+..|+..+|..+|++|||||.|+.+.++++..|+ +|.++.++... .....+.+.|+.+..+.+...|
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 99999999999999999999999999999999999999998776 58888776544 3446788999999999999999
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
..+|++++.. .++||||+||..+.+++++|....++|..+||+++|..|..+...|++.+..|||||||+|||+|+|+|
T Consensus 321 ~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 321 YTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 9999998754 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhHHHHHHHHHhc
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 415 (621)
+|||+||+|.++.+|+||+|||||.|..|.+++++.|+|..++..+. ..|+...+.+
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e~~-------------------- 456 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFEFP-------------------- 456 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccCCC--------------------
Confidence 99999999999999999999999999999999999999999999887 2233322221
Q ss_pred CCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCC
Q 007018 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP 478 (621)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~~~~~~~~~k~~~ 478 (621)
..-.......++.++..+ ..+++.+..||+.|...+..++...+.....++
T Consensus 457 ---------~~~~~~v~~~~~~li~~~---y~~~~aak~ay~syl~~y~s~slk~~~~~~~l~ 507 (543)
T KOG0342|consen 457 ---------PLKPEDVQSQLEKLISKN---YSLKEAAKEAYKSYLGAYNSHSLKDIFNVNLLE 507 (543)
T ss_pred ---------CCCHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhhhhccchhhhcccccchhh
Confidence 111111122233444433 335778899999999988888887766654443
No 7
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=8.7e-73 Score=585.47 Aligned_cols=358 Identities=35% Similarity=0.612 Sum_probs=336.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh--hCCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ--HVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~--~~~~~g~~~LIL 99 (621)
...|++++|+..++++|...+|..||.+|+.+||..|.|+||++.|.||||||+||++|++++|.. ++...|..+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 458999999999999999999999999999999999999999999999999999999999999964 556779999999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||||||.|+++++.+.++++++.+++++||.........+ .+.+|+|||||||++|+.+...++..+++++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999987776655 56999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC--CCCCCCceEEEEEcchhhHHHHHHH
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
+++|||...+..|+..+|..+||+|||||.+.++.++++..+.+|.+|.+... ...+.++++.|+.++..+|...|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998743 4566789999999999999999999
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
+|+.++ ..++|||++||++|.++++.+... |+++..+||.|+|..|..++.+|......||+|||+++||||+|.|
T Consensus 307 FI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 307 FIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 999985 578999999999999999999876 8899999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHH-HHHHH
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY-LLDLH 382 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~-l~~l~ 382 (621)
+|||++|.|.++++|+||+||++|.+..|.++++++|.|..+ +..++
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999998554 44443
No 8
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-71 Score=611.78 Aligned_cols=365 Identities=41% Similarity=0.685 Sum_probs=341.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
..|++|+|++.++++|.++||..|||||.++||.++.|+|+++.|+||||||+||++|+++++..........+|||+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874211111129999999
Q ss_pred HHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
||||.|+++.+..++... ++++.+++||.++..|...+..+++|+||||||+++|+.+. .++++.++++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~-~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG-KLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC-CcchhhcCEEEeccHhhhh
Confidence 999999999999999999 89999999999999999999888999999999999999984 7999999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCC--CCCCceEEEEEcchhh-HHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEE-KHAALLYM 258 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~~~~~~~~~~~~~-k~~~L~~~ 258 (621)
+|||.+++..|+..+|..+|+++||||+|..+..+++.++.+|..+.+..... ....+.+.|+.+.... |...|..+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~l 267 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998885555 7788999999999876 99999999
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
+... ...++||||+|++.|+.++..|...|+.+..+||+|+|.+|..++..|++|+.+||||||+++||||||++++|
T Consensus 268 l~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 268 LKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 8865 34479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc-cHHHHHHHHHHhCCCCc
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIR 390 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~~~l~~l~~~l~~~~~ 390 (621)
||||+|.+++.|+||+|||||+|+.|.+++|+++. |..++..++..++..+.
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999986 99999999988876633
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-70 Score=543.73 Aligned_cols=371 Identities=36% Similarity=0.560 Sum_probs=345.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
...+|+.|||++|+.+.+..+|++.|||+|..|||.||+|+|++++|.||||||++|.+|++++|.+++ .|..+||++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP--~giFalvlT 82 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP--YGIFALVLT 82 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC--CcceEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999998864 688999999
Q ss_pred chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC---CCCcCCcceEEEecc
Q 007018 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEA 177 (621)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~---~~~l~~l~~vViDEa 177 (621)
||||||.|+.+.+.-+++..++++++++||.++-.|-..+..+|+|+|+||||+-+++.... .+.+++++++|+|||
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 99999999999999999999999999999999999999999999999999999999998742 245899999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCC--ceeeeccCCCCCCCceEEEEEcchhhHHHHH
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p--~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (621)
|++++..|...+..|...+|..||+++||||+++.+..+...-...+ ..+....+....+.+.+.|+.++...|...|
T Consensus 163 DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 163 DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 99999999999999999999999999999999999888877666653 3344445666777899999999999999999
Q ss_pred HHHHHHhcc-CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCC
Q 007018 256 LYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (621)
Q Consensus 256 ~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~ 334 (621)
+++|+..-+ .++.++||++|+..++.++..|+..++.+..+||.|+|.+|...+.+|+++..+||||||||+||+|||.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 999988755 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 335 v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
|++|||||+|.+|++|+||+||++|+|+.|.+++|+++.|+..+..++...++.+..-+
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999998877654
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-69 Score=519.89 Aligned_cols=373 Identities=35% Similarity=0.579 Sum_probs=352.8
Q ss_pred hccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEE
Q 007018 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (621)
Q Consensus 17 ~~~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~ 96 (621)
++-+...+|++|||++++++++...||..|+.+|+.|||.|+.|+||++.|..|+|||.+|.+.+++.+.-.. ...++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--r~tQ~ 98 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--RETQA 98 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--ceeeE
Confidence 3445578999999999999999999999999999999999999999999999999999999999988876432 34689
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEec
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDE 176 (621)
|||+||||||.|+.+++..++...++.+..+.||.+..+..+.+.-+..++.+||||+++++.+ ..+..+.++++|+||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDE 177 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEecc
Confidence 9999999999999999999999999999999999999999998888999999999999999998 578999999999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-HHHHH
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAAL 255 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L 255 (621)
||.|++.||.+++..|++.+|+++|++++|||+|..+.+....++.+|+.+-+..+......+.+.|+.+..++ |.+.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999998877 99999
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
.++.... .-.+.+|||||+..++++.+.+++..+.++..||+|.|++|..++.+|++|+.+|||+||+.+||+|+|.|
T Consensus 258 cdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 9988765 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~ 394 (621)
.+|||||+|.+...|+||+||.||.|++|.++.|+..+|+..+.+++.++...+...|.
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999887776664
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4e-68 Score=548.70 Aligned_cols=363 Identities=37% Similarity=0.597 Sum_probs=343.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-------CCCCe
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGV 94 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-------~~~g~ 94 (621)
-.+|++.|++..+++.|...||..|||||+.+||..++.+|+++.|.||||||++|++|++..+...+ ...|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 45899999999999999999999999999999999999999999999999999999999998875433 13589
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEE
Q 007018 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vVi 174 (621)
.++||.||||||.|+.+...+|++..+++++.++||.+.++|--.+..+|.|+|+|||+|.+.+.+ ..+-++.+.+||+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEec
Confidence 999999999999999999999999999999999999999999778889999999999999999987 4678999999999
Q ss_pred eccccccCCChHHHHHHHHHhcccC-------------------------CcEEEEEccCcHHHHHHHHhcCCCCceeee
Q 007018 175 DEADCLFGMGFAEQLHKILGQLSEN-------------------------RQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (621)
Q Consensus 175 DEah~l~~~gf~~~l~~il~~l~~~-------------------------~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (621)
||||+|.+|||.+++..|+..+|.. +|+++||||+|+.+..+++.+|.+|+.+.+
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vti 482 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTI 482 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEe
Confidence 9999999999999999999999741 799999999999999999999999999999
Q ss_pred ccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHH
Q 007018 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309 (621)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l 309 (621)
....+..+.+++.++.+..++|...|..+|... -..++|||+|+++.|+.+++.|.+.|+.+..+||+-+|++|..++
T Consensus 483 g~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred ccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999999999999999999999999999887 357899999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCC
Q 007018 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (621)
Q Consensus 310 ~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~ 387 (621)
..|+.|..+||||||+|+||||||+|.+|||||++.+..+|+||+|||||+|+.|++++|++++|-..+++|...+..
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~e 638 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRE 638 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888776653
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-65 Score=555.19 Aligned_cols=370 Identities=33% Similarity=0.540 Sum_probs=339.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC-----CCCeE
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-----QGGVR 95 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~-----~~g~~ 95 (621)
...+|+++||++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 3478999999999999999999999999999999999999999999999999999999999999865322 23578
Q ss_pred EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEe
Q 007018 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (621)
Q Consensus 96 ~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViD 175 (621)
+|||+||||||.|+++.+..++...++++..++||.....+...+..+++|+|+||++|.+++.. ..+.++++++||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViD 164 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLD 164 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEe
Confidence 99999999999999999999999999999999999999999888888999999999999999876 46889999999999
Q ss_pred ccccccCCChHHHHHHHHHhccc--CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHH
Q 007018 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (621)
Q Consensus 176 Eah~l~~~gf~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 253 (621)
|||++++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.++......|..
T Consensus 165 Ead~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 165 EADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 99999999999999999999984 5678999999999999999999999998888776666667777777777778888
Q ss_pred HHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC
Q 007018 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (621)
Q Consensus 254 ~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip 333 (621)
.|..++... ...++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|++|+++||||||+++||||+|
T Consensus 245 ~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 245 LLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 888887654 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 334 ~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
++++|||||+|.++..|+||+||+||+|+.|.+++|++++|...+..++.+++..+...+
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999888877665433
No 13
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-65 Score=531.56 Aligned_cols=446 Identities=28% Similarity=0.452 Sum_probs=360.4
Q ss_pred ccCCCCCccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC----CC
Q 007018 18 KKSKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QG 92 (621)
Q Consensus 18 ~~~~~~~f~~l~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~----~~ 92 (621)
+.-++..|.++||++.+...|.. |++..||.+|.++||.+++|+|+++.|+||||||+||++|+++.|....+ ..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34567899999999999999986 79999999999999999999999999999999999999999999976432 46
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCC-CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~-l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
|+-||||+||||||.|+|+.++++.+... +-.+.+.||+........+.++++|+|+|||||++|+.+...+.++++.+
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 89999999999999999999999987754 34467889999888888999999999999999999999999999999999
Q ss_pred EEEeccccccCCChHHHHHHHHHhc-------------ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC------
Q 007018 172 VVFDEADCLFGMGFAEQLHKILGQL-------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD------ 232 (621)
Q Consensus 172 vViDEah~l~~~gf~~~l~~il~~l-------------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~------ 232 (621)
|||||||+++++||...+..|+..+ |...|.+|+|||+++.+..++...|.+|..|.+|..
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 9999999999999999999999876 234789999999999999999999999999985421
Q ss_pred -------------------CCCCCCceEEEEEcchhhHHHHHHHHHHHhcc--CCCcEEEEecChhhHHHHHHHHHHC--
Q 007018 233 -------------------TKISPDLKLAFFTLRQEEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE-- 289 (621)
Q Consensus 233 -------------------~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~-- 289 (621)
..++..+.+.|..|++..+.-+|..+|.+..+ ...++|||+++++.|++-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 23455678899999999999999888887654 3557899999999999999888652
Q ss_pred --------------------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhH
Q 007018 290 --------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (621)
Q Consensus 290 --------------------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~ 349 (621)
+.....+||+|.|++|..+++.|...+-.||+||||++||||+|.|++||+||+|.++.+
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 344678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCHHHHHhhhhhHHHHHHHHHhcCCccccccchhHHH
Q 007018 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID 429 (621)
Q Consensus 350 ~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 429 (621)
|+||+|||+|+|..|.++.|+.|.|..|+..+...-.. +.. +..+..+.... . ......+..-++..-
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~-l~q-~~~~~~l~~~~---------~-~~~k~~~~e~~~~at 598 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIM-LLQ-FDMEILLPAFK---------P-RKDKAKTKEWQERAT 598 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcch-hhc-cchhhhhhhcC---------c-ccccccchhhhhhHH
Confidence 99999999999999999999999999998877643322 111 11111111000 0 000111111111122
Q ss_pred HhhHHHHHHHHhhHhhHHHHHHHHHHHHHhhcCCCCC--CccccccCCCCC
Q 007018 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP--SKESIRRGKDLP 478 (621)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~y~~~~~~~--~~~~~~~~k~~~ 478 (621)
...-.++.++.. ...++..+.+||..|.+.+... +..+|+.++.|-
T Consensus 599 ~~q~~~e~~~~~---~~~~~~~a~kaf~S~vr~Yath~~elk~iFnvr~lH 646 (708)
T KOG0348|consen 599 TLQLNLERLVVG---DEAMKNLAKKAFVSWVRAYATHPSELKSIFNVRFLH 646 (708)
T ss_pred HHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHhhChhhhccceehhhhh
Confidence 222233333433 3455667888888887766543 333677766654
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.7e-64 Score=561.64 Aligned_cols=369 Identities=34% Similarity=0.573 Sum_probs=336.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC---CCCCeEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~---~~~g~~~LI 98 (621)
..+|++++|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|++..+.... ...++.+||
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999998876432 234788999
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
|+||||||.|+.+.++.|+...++++.+++||.....+...+..+++|+|+||++|.+++.. ....++++++|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEAD 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHH
Confidence 99999999999999999999999999999999999988888889999999999999999986 46779999999999999
Q ss_pred cccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCC-CCceeeeccCC-CCCCCceEEEEEcchhhHHHHHH
Q 007018 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALL 256 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~L~ 256 (621)
++++++|..++..|+..+++.+|+++||||+|+.+..+++..+. +|..+.+.... .....+.+.+..+...+|...|.
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 99999999999999999999999999999999999999988875 56666554332 33456777788888888899999
Q ss_pred HHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCC
Q 007018 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (621)
Q Consensus 257 ~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~ 336 (621)
.++......+.++||||+|+..|+.++..|...++.+..+||++++.+|..+++.|++|++.||||||+++||||+|+++
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 99988766788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 337 ~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
+|||||+|.++..|+||+||+||+|+.|.+++|+++++...+.++...+......
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~ 502 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQP 502 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999988888877666554433
No 15
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-66 Score=505.22 Aligned_cols=370 Identities=31% Similarity=0.532 Sum_probs=348.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
-++..|+++.|...++.+|.++||..|+|+|.++||.++.|+|+++.|..|+|||.||++|+++++... ....+++|+
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~il 159 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIIL 159 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEEE
Confidence 368899999999999999999999999999999999999999999999999999999999999999753 356789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||||||.|+...++++++.+++.+...+||+++....-.+....+++|+||||++++... ....++++.++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhh
Confidence 9999999999999999999999999999999999998888888999999999999999987 567899999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHH
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (621)
+++..|...+..++..+|+++|++|+|||+|-.+..|...++++|..|.+-.+-. ...+.++|-.+....|...|-.++
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLt-l~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELT-LKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhh-hcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998865543 346788888899999998888877
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
.+. .-.+.|||||+...||.++....+.|+.|.++|+.|.|+.|.+++..|++|.++.|||||...||||++.+++||
T Consensus 318 skL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 318 SKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 765 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 007018 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 340 ~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
|||+|.++++|+||+||.||.|..|.|+.+++.+|...+++++..|+..+.+.|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999998887743
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-63 Score=556.33 Aligned_cols=371 Identities=36% Similarity=0.564 Sum_probs=340.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-----CCCCeEEE
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRAL 97 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-----~~~g~~~L 97 (621)
.+|++|+|++.++++|.++||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+.... ...+.++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5799999999999999999999999999999999999999999999999999999999999986432 12357899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
||+||+||+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999999888888899999999999999987644577899999999999
Q ss_pred ccccCCChHHHHHHHHHhccc--CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHH
Q 007018 178 DCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (621)
|++++++|...+..|+..++. .+|+++||||++..+..++...+.+|..+.+.........+.+.++.+....+...|
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999987 789999999999999999999999988777766655566777778877788888888
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
+.++... .+.++||||+|++.++.+++.|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++
T Consensus 249 ~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 249 LGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 8887653 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
++|||||+|.++..|+||+||+||.|+.|.+++|+++.+...+.+++.++...+...|..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999999888776655544
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-63 Score=545.82 Aligned_cols=364 Identities=36% Similarity=0.611 Sum_probs=337.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|++|+|++.++++|.++||..|||+|.+|||.++.|+|+++.||||||||++|++|+++.+... ..+.++|||+|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999998643 23568999999
Q ss_pred hHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|||||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+|||++.+++.+ ..+.++++++|||||||++
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999988765 7999999999999999999999999999999999999987 4678999999999999999
Q ss_pred cCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHH
Q 007018 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (621)
++++|...+..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ..+.+.+.++.+....|...|..++.
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876654 34558888888888889988888887
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~ 340 (621)
.. .+.++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|+.+||||||++++|||+|++++|||
T Consensus 239 ~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 239 HH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred hc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 341 ~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
||+|.++..|+||+||+||+|+.|.+++|+.++|...+..++..++..+..
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999888888766554
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.9e-63 Score=555.92 Aligned_cols=372 Identities=34% Similarity=0.603 Sum_probs=342.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|.+|+|++.++++|.++||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+... ..++++|||+|
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~P 82 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAP 82 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeC
Confidence 3469999999999999999999999999999999999999999999999999999999999988642 24578999999
Q ss_pred hHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
||+||.|+++.++++.... ++.+..++||.++..+...+..+++|+|+||+++++++.. ..+.++++.+|||||||.+
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHH
Confidence 9999999999999987665 7999999999999999999989999999999999999987 4688999999999999999
Q ss_pred cCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHH
Q 007018 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (621)
++++|...+..|+..+|..+|+++||||+|+.+..+++.++.+|..+.+.......+.+.+.|+.+....|...|..++.
T Consensus 162 l~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 162 LRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887776667788888888888889888888886
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~ 340 (621)
.. ...++||||+|+..++.++..|...|+.+..+||+|++..|..+++.|++|+++||||||++++|||+|++++|||
T Consensus 242 ~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 242 AE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred hc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC--CCCHHHH
Q 007018 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEEEV 398 (621)
Q Consensus 341 ~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~--~p~~~~~ 398 (621)
||+|.++..|+||+|||||+|+.|.+++|+.+.|...+..++..++..+.. .|..+++
T Consensus 320 ~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~ 379 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 (629)
T ss_pred eCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHH
Confidence 999999999999999999999999999999999999999998888766544 3444433
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.4e-63 Score=543.29 Aligned_cols=364 Identities=37% Similarity=0.621 Sum_probs=333.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC----CCCeEEEE
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALI 98 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~----~~g~~~LI 98 (621)
++|++|+|+++++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ....++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 37999999999999999999999999999999999999999999999999999999999999865321 12458999
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
|+||++||.|+.+.++.+....++.+..++||.+...+...+.++++|+|+||++|++++.. ..+.++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHH
Confidence 99999999999999999999999999999999999988888888999999999999998876 46789999999999999
Q ss_pred cccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHH
Q 007018 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (621)
++++++|...+..++..++..+|+++||||+++.+..++...+.+|..+.+.........+.+.+..+....+...|..+
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l 239 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766655666777777777777776666666
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
+... ...++||||++++.++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++|
T Consensus 240 ~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 240 IGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 5543 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~ 389 (621)
||||+|.++..|+||+||+||+|..|.+++|++++|...+.+++..+...+
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999988877654
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-62 Score=545.44 Aligned_cols=370 Identities=32% Similarity=0.534 Sum_probs=335.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh-----CCCCCeEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH-----VPQGGVRA 96 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~-----~~~~g~~~ 96 (621)
-.+|++++|++.++++|.+.||..|||+|.++||.++.|+|+++.||||||||++|++|++..+... ....++++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999887532 12357899
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEec
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDE 176 (621)
|||+||||||.|+.+.++.+++..++.+..++||.....+...+..+++|+|+|||+|.+++.. ....++++.+|||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDE 278 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDE 278 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEeec
Confidence 9999999999999999999999999999999999999999888888999999999999999987 467899999999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHH
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (621)
||+++++||..++..|+..++ .+|+++||||+|+.+..++...+.++..+.+.........+.+.+..+....+...|.
T Consensus 279 ad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~ 357 (518)
T PLN00206 279 VDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLF 357 (518)
T ss_pred HHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHH
Confidence 999999999999999999885 6899999999999999999999999988887766655666777777788778888888
Q ss_pred HHHHHhccCCCcEEEEecChhhHHHHHHHHHH-CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 257 ~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
.++........++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||++++||||+|++
T Consensus 358 ~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v 437 (518)
T PLN00206 358 DILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRV 437 (518)
T ss_pred HHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccC
Confidence 88876544456899999999999999999975 58999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
++|||||+|.+...|+||+||+||+|..|.+++|+++++...+.++...+...-...|
T Consensus 438 ~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 438 RQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred CEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999998888888777765444333
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3e-61 Score=526.87 Aligned_cols=363 Identities=37% Similarity=0.609 Sum_probs=329.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC--CCCeEEEEEcc
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSP 101 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~--~~g~~~LIL~P 101 (621)
.|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+.++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6999999999999999999999999999999999999999999999999999999999999865321 23468999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|++||.|+++.+..++...++.+..++||.....+...+.++++|+|+||++|++++.. ..+.+.++++|||||||+++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999999988888888999999999999999886 56789999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcH-HHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMI 259 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~l 259 (621)
+++|...+..+...++..+|+++||||++. .+..++...+.+|..+...........+.+.+..+.. ..+...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999985 5888998889999888877666666667777766654 45666666666
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
... ...++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++||
T Consensus 241 ~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 241 KQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred hcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 532 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 007018 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (621)
Q Consensus 340 ~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~ 389 (621)
|||+|.+...|+||+||+||+|..|.+++|+..+|...+..++.++..++
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999988887776544
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-63 Score=499.33 Aligned_cols=369 Identities=35% Similarity=0.601 Sum_probs=327.1
Q ss_pred CCCccC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC----CCCCeEE
Q 007018 22 SGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRA 96 (621)
Q Consensus 22 ~~~f~~-l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~----~~~g~~~ 96 (621)
.-+|++ ++-.+++++.|.+.||..|||||.++||.+|+|.|+++.|.||+|||++||+|-+-.+...+ ...++.+
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 346654 56789999999999999999999999999999999999999999999999999887765432 2457899
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEec
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDE 176 (621)
|+++||||||.|+.-.++++. +-+++..+++||.+..+|.+.+..+.+|+|+|||+|.++... ...++.++.|+|+||
T Consensus 298 lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDE 375 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDE 375 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecc
Confidence 999999999999988777765 568899999999999999999999999999999999998876 468899999999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCC-CCCCCceEEEEEcchhhHHHHH
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~L 255 (621)
||+|++|||..++..|+-.+.+.+|+++.|||+|+.+..++..++++|..+.+..-. .....+.+.++.....+|...+
T Consensus 376 ADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 376 ADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV 455 (629)
T ss_pred hhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765432 2234566666555566666554
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
-.++. ...++.++||||..+..++.|...|.-.|+..-.+||+-+|.+|+..++.|++|+++|||+||+++||||+|++
T Consensus 456 ~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 456 QFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 44444 45678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
++|+|||+|.+++.|+||+||+||+|++|.+++|++.+|...+..+...|.+.-+..|
T Consensus 535 THV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 535 THVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999999999999888887766655444333
No 23
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.6e-64 Score=501.88 Aligned_cols=363 Identities=35% Similarity=0.583 Sum_probs=333.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh------CCCCCe
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH------VPQGGV 94 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~------~~~~g~ 94 (621)
.-.+|.+|.++..+++.|+++|+..|||||.+.+|.+++|+|.++.|-||||||++|.+|++-..... ....|+
T Consensus 168 PIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP 247 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGP 247 (610)
T ss_pred chhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCC
Confidence 45799999999999999999999999999999999999999999999999999999999998655332 235789
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhcc------CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 95 RALILSPTRDLALQTLKFTKELGRY------TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~------~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
-+|||||+||||.|+++.+..+... ..+++.+++||..+.+|...+..+..|+|+|||||.+++.. +.+++.-
T Consensus 248 ~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~ 326 (610)
T KOG0341|consen 248 YGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDA 326 (610)
T ss_pred eeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHH
Confidence 9999999999999999988877543 24789999999999999999999999999999999999987 5788999
Q ss_pred cceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch
Q 007018 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ 248 (621)
Q Consensus 169 l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~ 248 (621)
+.|+++||||||.+|||...+..|+..+...+|++|||||+|..+..|++.-+-.|+.+.+......+-++.+....++.
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998877777677777777888
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
+.|.-.|++.|++. ..++||||..+..++.++++|--.|+.+..+||+-+|++|...++.|+.|+.+|||+||+|+.
T Consensus 407 EaKiVylLeCLQKT---~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASK 483 (610)
T KOG0341|consen 407 EAKIVYLLECLQKT---SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASK 483 (610)
T ss_pred hhhhhhHHHHhccC---CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhc
Confidence 88888888888765 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecc-ccHHHHHHHHHHhCC
Q 007018 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSK 387 (621)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~-~e~~~l~~l~~~l~~ 387 (621)
|+|+|++.+|||||.|...+.|+||+||+||.|++|.+.+|+.. .+...+.|+...|-.
T Consensus 484 GLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~E 543 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQE 543 (610)
T ss_pred cCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 466777777655543
No 24
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-62 Score=496.47 Aligned_cols=363 Identities=34% Similarity=0.512 Sum_probs=326.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC----CCCCeEEEE
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRALI 98 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~----~~~g~~~LI 98 (621)
-+|++|||++.+++++.+.||..||-+|..|||.+++|+|+++.|+||||||+||++|+++.|.... ...|+.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5899999999999999999999999999999999999999999999999999999999999996532 245789999
Q ss_pred EcchHHHHHHHHHHHHHhhccCC--CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEec
Q 007018 99 LSPTRDLALQTLKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~--l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDE 176 (621)
|+||+|||.|+++++..+....+ ++++-+....+.......+...|+|+|+||++++.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999876653 5666666555555555667889999999999999999875447799999999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCC-CCCCCceEEEEEcchhhHHHHH
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~-~~~~~~~~~~~~~~~~~k~~~L 255 (621)
||.++..||.+.+..+...+|...|.+|||||+.+.+..+-+.++++|.++.+.... ..++.+.++++.|...+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 999999999999999999999999999999999999999999999999998886554 3456888999999988898888
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc----------
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV---------- 325 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv---------- 325 (621)
+.+++-.+ -.+++|||+||.+.+..+.-+|...|++..+++|.|+...|.-++++|+.|-++|+||||.
T Consensus 259 yallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 259 YALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 77776443 3678999999999999999999999999999999999999999999999999999999992
Q ss_pred -------------------------ccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHH
Q 007018 326 -------------------------AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (621)
Q Consensus 326 -------------------------aarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~ 380 (621)
++||||+..|.+|+|||+|.++..|+||+|||||+|++|.+++|+.|.|......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 2799999999999999999999999999999999999999999999999887777
Q ss_pred HHHHhC
Q 007018 381 LHLFLS 386 (621)
Q Consensus 381 l~~~l~ 386 (621)
++.++.
T Consensus 418 le~~~~ 423 (569)
T KOG0346|consen 418 LESILK 423 (569)
T ss_pred HHHHHh
Confidence 765554
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-62 Score=514.26 Aligned_cols=365 Identities=36% Similarity=0.566 Sum_probs=337.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC------C--CCe
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP------Q--GGV 94 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~------~--~g~ 94 (621)
++|.+-.+.+.+...+...||..|||+|+.+||.|..|+|++++|+||||||.|||+|+++.+.+... . ..+
T Consensus 74 ~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 74 PTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred ccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 47888889999999999999999999999999999999999999999999999999999999975421 1 248
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEE
Q 007018 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vVi 174 (621)
++|||+|||||+.|+++..++|.-..++.+..++||.+...+.+.+..+++|+|||||+|.+++.. +.+.+.++.++|+
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLVL 232 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999987 5789999999999
Q ss_pred eccccccC-CChHHHHHHHHHhccc----CCcEEEEEccCcHHHHHHHHhcCCC-CceeeeccCCCCCCCceEEEEEcch
Q 007018 175 DEADCLFG-MGFAEQLHKILGQLSE----NRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLRQ 248 (621)
Q Consensus 175 DEah~l~~-~gf~~~l~~il~~l~~----~~q~ll~SATl~~~l~~~~~~~l~~-p~~i~~~~~~~~~~~~~~~~~~~~~ 248 (621)
||||+|++ |+|..++..|+..... .+|++|||||.|..+..++..++.+ +..+.+..-.....++.+.+..|..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999999 9999999999998854 7999999999999999999888886 8888888888889999999999999
Q ss_pred hhHHHHHHHHHHHhcc--CC-----CcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 007018 249 EEKHAALLYMIREHIS--SD-----QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~--~~-----~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (621)
.+|...|++++..... .. ++++|||.|+..+..+..+|...++++..+||+..|.+|...+..|++|.+.+||
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 9999999999986542 12 3799999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCC
Q 007018 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (621)
Q Consensus 322 ~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~ 388 (621)
||++++||||||+|++|||||+|.+..+|+||+|||||+|..|.+.+|+...+......++.++...
T Consensus 393 aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea 459 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEA 459 (482)
T ss_pred EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999977776667776665443
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-61 Score=498.15 Aligned_cols=365 Identities=37% Similarity=0.576 Sum_probs=333.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC---CCCCeEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~---~~~g~~~ 96 (621)
+...+|+.+|++..|+.++.+..|.+|||+|++++|..+.|+||+..|.||||||.||++|++-.+.... +..|+-+
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~ 299 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIG 299 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeE
Confidence 4467899999999999999999999999999999999999999999999999999999999999886532 3578999
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEec
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDE 176 (621)
||+|||||||.|++.++++|++..++++++++||-+..+|+..+..++.|||||||||++++.- +..++.++.++||||
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DE 378 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDE 378 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999875 688999999999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHH
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAAL 255 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L 255 (621)
||+|++|||..++..|..++.+.+|+|+||||++..++.+++..|.+|+.+....-......+.+.+..+.. ..|...|
T Consensus 379 adrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl 458 (731)
T KOG0339|consen 379 ADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWL 458 (731)
T ss_pred hhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876554333344556666666654 5577777
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
+..|-... ..+++|||+.-+..++.++..|...++++..+||+|+|.+|.+++.+|+.+...|||+||+++||+|||.+
T Consensus 459 ~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 459 LRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 77776654 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~ 386 (621)
..|||||+-.+++.|+||+||+||+|..|.+|+++++.|..+.-.|-..|.
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred ceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 999999999999999999999999999999999999999887666554443
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.1e-60 Score=521.56 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=335.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCC-----CCeEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-----GGVRA 96 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~-----~g~~~ 96 (621)
..+|.+++|++.+.++|.++||..|||+|.++||.++.|+|+++.++||||||++|++|+++.+...... .+.++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999998764321 25789
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEe
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViD 175 (621)
|||+||++||.|+++.++.+.+..++.+..++||.+...+.+.+. ..++|+|+||++|++++.. ....++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEec
Confidence 999999999999999999999999999999999998888777764 5789999999999988876 45779999999999
Q ss_pred ccccccCCChHHHHHHHHHhccc--CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHH
Q 007018 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (621)
Q Consensus 176 Eah~l~~~gf~~~l~~il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~ 253 (621)
|||++++++|..++..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.++.+...++..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999999999999999998864 5799999999999999999999999998888777666667777888888788888
Q ss_pred HHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC
Q 007018 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (621)
Q Consensus 254 ~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip 333 (621)
.|..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 887777653 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCc
Q 007018 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (621)
Q Consensus 334 ~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~ 390 (621)
++++||+|++|.+...|+||+||+||.|+.|.+++|+.++|..++..++.++++++.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999998874
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-63 Score=510.91 Aligned_cols=365 Identities=34% Similarity=0.530 Sum_probs=323.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhC---------CC
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHV---------PQ 91 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~---------~~ 91 (621)
-..|..|+|+.+++++|..+||..|||||..++|.+..| .|+++.|.||||||+||-|||++.+...+ ..
T Consensus 180 vsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 457999999999999999999999999999999999999 79999999999999999999999664322 12
Q ss_pred CCeE--EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC--CCcC
Q 007018 92 GGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED--MSLK 167 (621)
Q Consensus 92 ~g~~--~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~--~~l~ 167 (621)
.+++ +||++||||||.|+..-+..++..+++++..++||-....|.+.+...|+|||+|||||+.++.+... -.++
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 3455 99999999999999999999999999999999999999999999999999999999999999987433 2488
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcc-----cCCcEEEEEccCcH---------------------HHHHHHH-hc
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLPS---------------------ALAEFAK-AG 220 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~-----~~~q~ll~SATl~~---------------------~l~~~~~-~~ 220 (621)
++.++|+||||||.+.|+.+.+..|+..+. ..+|++.||||++- .+..+++ .+
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 899999999999999999999999998875 46899999999842 1222322 23
Q ss_pred C-CCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCC
Q 007018 221 L-RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD 299 (621)
Q Consensus 221 l-~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~ 299 (621)
+ .+|.++.+.........+.-..+.|+..+|.-.|.++|..+ ++++|||||++..+..++-+|...++.+..+|..
T Consensus 420 ~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 420 FRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred ccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 3 36677777777766666666667778888887787777665 6899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHH
Q 007018 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379 (621)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~ 379 (621)
|.|..|...+++|++....|||||||||||||||+|+|||+|..|.+.+.|+||.|||+|++..|..+.++.|.|+..+.
T Consensus 497 M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhCCCC
Q 007018 380 DLHLFLSKPI 389 (621)
Q Consensus 380 ~l~~~l~~~~ 389 (621)
.+..-|.+..
T Consensus 577 KL~ktL~k~~ 586 (731)
T KOG0347|consen 577 KLCKTLKKKE 586 (731)
T ss_pred HHHHHHhhcc
Confidence 8887776543
No 29
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.2e-60 Score=524.42 Aligned_cols=373 Identities=35% Similarity=0.598 Sum_probs=348.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC---CCCeEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRA 96 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~---~~g~~~ 96 (621)
+.-.+|.+.|++..++..++++||..|||||.+|||.|+.|+|||+.|.||||||++|++||+.++....+ ..|+-+
T Consensus 362 kpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred cccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 44679999999999999999999999999999999999999999999999999999999999977765432 468999
Q ss_pred EEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC--CCCcCCcceEEE
Q 007018 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE--DMSLKSVEYVVF 174 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~--~~~l~~l~~vVi 174 (621)
||++|||||+.|+.++++.|.+.+++++++++||....++...+..++.|+||||||+++.+.... -..+.++.++|+
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~ 521 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVL 521 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeee
Confidence 999999999999999999999999999999999999999999999999999999999999886532 245667779999
Q ss_pred eccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcc-hhhHHH
Q 007018 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHA 253 (621)
Q Consensus 175 DEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~ 253 (621)
||||+|++|||..++..|+..+++.+|+++||||+|..+..+++..+..|..+.+........++.+.+..+. ..+|+.
T Consensus 522 deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~ 601 (997)
T KOG0334|consen 522 DEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFL 601 (997)
T ss_pred chhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988888899999999998 889999
Q ss_pred HHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC
Q 007018 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (621)
Q Consensus 254 ~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip 333 (621)
.|+.+|..... ..++||||..+..|+.+...|.+.|+.|..+||+.+|.+|..++..|+++.+++||+|++++||||++
T Consensus 602 kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 602 KLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccc
Confidence 99999988754 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 334 ~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
.+.+|||||+|.-...|+||+|||||+|++|.|++|++|++..|..+|..++...-...|
T Consensus 681 ~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 681 ELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred cceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 999999999999999999999999999999999999999999999999998854444444
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.7e-58 Score=495.26 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=330.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|+++||++.+++++.+.||..|||+|.++|+.++.|+|+++.||||||||++|++|+++.+... ..+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999887532 24678999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|++|+.|+.+.+..++...++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.++++++|||||||++.
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHH
Confidence 99999999999999998889999999999998888888888899999999999998876 45779999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchh-hHHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIR 260 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~-~k~~~L~~~l~ 260 (621)
+.+|...+..++..++...|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+... .+...+..++.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888776665554555666666666543 35555666555
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~ 340 (621)
.. ...++||||+|+.+++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 264 ~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~ 341 (401)
T PTZ00424 264 TL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 341 (401)
T ss_pred hc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE
Confidence 43 3568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 341 ~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
||+|.+...|+||+||+||.|+.|.|++|+++++..++..++..+...+...|
T Consensus 342 ~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 342 YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred ECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999888877665543
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-58 Score=460.92 Aligned_cols=366 Identities=35% Similarity=0.603 Sum_probs=346.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
-+|++|+|+++++++|...||..|+.||+.||+.+..|.|+.+.+++|+|||.+|++++++.+.-. .....||++.||
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPt 103 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPT 103 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcch
Confidence 489999999999999999999999999999999999999999999999999999999999988532 346689999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
||||.|+.++...++...+.++..++||.....+...+ ...+.|+|+||||+++.+... .+..+.++++|+||||.++
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEML 182 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhh
Confidence 99999999999999999999999999999988665555 456999999999999999885 7888899999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 261 (621)
..||.+++..|+..+|++.|++++|||+|+++.+..+.++.+|..+.+..+......+.+.|..+..++|...|..+.+
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999988888889999999999999999999888
Q ss_pred hccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEc
Q 007018 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (621)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~ 341 (621)
.-.+.+|||||+..+..+...|...+..++.+||+|.+..|..++..|+.|..+|||+|+.+|||+|+..+..||||
T Consensus 262 ---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 262 ---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred ---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 007018 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 342 d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
++|.....|+||+||+||.|++|.++.+++.++...+.+++.|+..++...|..
T Consensus 339 dlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 339 DLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred ccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999998887754
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-57 Score=448.03 Aligned_cols=360 Identities=31% Similarity=0.529 Sum_probs=323.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
..+|++|+|.|+++++|..|+|..|+.||..|+|.+|.. ++.++.+..|+|||.||.+.|+.++.... .-++++.|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceee
Confidence 358999999999999999999999999999999999986 78999999999999999999999987543 35678999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||||||.|+.+++.+.|+++++.....+-|.....- -.-...|+|+|||.+++++...+.+++..++++|+||||.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 9999999999999999999999998888876621110 0113569999999999999987788999999999999999
Q ss_pred ccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHH
Q 007018 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (621)
Q Consensus 180 l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (621)
+.+ .||.++-..|...+|.+.|+++||||+...+..|+...+.+|..+.+..+....+.+.+.|+.|.. ++|..+|.+
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH
Confidence 885 689999999999999999999999999999999999999999999999999888999999998876 568888888
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
+..-. .-+++||||.|+..+..++..|...|+.+..+||+|.-.+|..++..|+.|...|||+|+|+|||||++.|.+
T Consensus 324 lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 324 LYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 55432 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC------CChhHHHHHhcccCCCCCccEEEEEeccc-cHHHHHHHHHHhCCC
Q 007018 338 VINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKP 388 (621)
Q Consensus 338 VI~~d~P------~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~~~l~~l~~~l~~~ 388 (621)
|||||+| +++.+|+||+||+||.|+.|.++.|+... .+..+..++..+...
T Consensus 402 VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 402 VVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred EEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 9999999 58999999999999999999999999874 556666777777543
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-54 Score=443.55 Aligned_cols=357 Identities=31% Similarity=0.462 Sum_probs=307.3
Q ss_pred CccCCCCCHHHH----------HHHHHCCCCCChHHHHHHHHHHhc---------CCcEEEEcCCCchHHHHHHHHHHHH
Q 007018 24 GFESLNLSPNVF----------RAIKRKGYKVPTPIQRKTMPLILS---------GADVVAMARTGSGKTAAFLVPMLQR 84 (621)
Q Consensus 24 ~f~~l~L~~~l~----------~~l~~~g~~~ptpiQ~~aip~il~---------g~dvv~~a~TGSGKT~afllp~l~~ 84 (621)
.|+.+++++.+. .++.+++++...|+|...+|.++. .+|+++.||||||||++|.+|+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 456666665544 448899999999999999999963 5899999999999999999999999
Q ss_pred HhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC-CC----CEEEECchHHHHhHh
Q 007018 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NP----DIIIATPGRLMHHLS 159 (621)
Q Consensus 85 L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~-~~----~IiV~Tpgrl~~~l~ 159 (621)
|..+.. ...|+|||+||++|+.|+++.+.++...+++.++.+.|..+.+.....+.+ .+ ||+|+|||||.+|+.
T Consensus 208 L~~R~v-~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRPV-KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCCc-cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 876543 358999999999999999999999999999999999999998888777754 34 899999999999999
Q ss_pred hcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc----------------------------------cCCcEEEE
Q 007018 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS----------------------------------ENRQTLLF 205 (621)
Q Consensus 160 ~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~----------------------------------~~~q~ll~ 205 (621)
+++.++|+++.++||||||||++..|...+..++..+. +..+-++|
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 99999999999999999999998777766655554332 12246889
Q ss_pred EccCcHHHHHHHHhcCCCCceeeec----cCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHH
Q 007018 206 SATLPSALAEFAKAGLRDPHLVRLD----VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (621)
Q Consensus 206 SATl~~~l~~~~~~~l~~p~~i~~~----~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~ 281 (621)
|||+......+...-+..|.+..+. .....++.+.+.++.+....+.-.+..++... +..++|+|+++...+..
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANR 444 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHH
Confidence 9999877777777788888776665 33455667788888888878888888888765 67899999999999999
Q ss_pred HHHHHH----HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhccc
Q 007018 282 LNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (621)
Q Consensus 282 l~~~L~----~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~ 357 (621)
++..|. ....++..+.|.+++..|...+.+|..|++++|||+|+++||+|+-++++|||||+|.+..+|+||+|||
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999887 3356777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEeccccHHHHHHHHH
Q 007018 358 ARAGRTGTAFSFVTSEDMAYLLDLHL 383 (621)
Q Consensus 358 gR~G~~G~~i~~v~~~e~~~l~~l~~ 383 (621)
||||+.|.||+++..++...|.++-.
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHH
Confidence 99999999999999999887766543
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-52 Score=479.58 Aligned_cols=362 Identities=21% Similarity=0.296 Sum_probs=284.6
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~--L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
.+.|..++ |++.+.++|.++||+.|||+|.++||.+++|+|+++.+|||||||+||++|+++.+... .+.++|||
T Consensus 11 ~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l 87 (742)
T TIGR03817 11 AGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYL 87 (742)
T ss_pred CcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEE
Confidence 33444443 89999999999999999999999999999999999999999999999999999999753 46789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC---CCCcCCcceEEEec
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDE 176 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~---~~~l~~l~~vViDE 176 (621)
+|||+||.|+.+.+++++ ..++++..+.|+.. ..+...+..+++|+|+||+++...+.... ...++++++|||||
T Consensus 88 ~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDE 165 (742)
T TIGR03817 88 APTKALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDE 165 (742)
T ss_pred cChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeC
Confidence 999999999999999997 45788877777665 44445667789999999999864332110 12278999999999
Q ss_pred cccccCCChHHHHHHHHHh-------cccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcc--
Q 007018 177 ADCLFGMGFAEQLHKILGQ-------LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-- 247 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~-------l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-- 247 (621)
||.+.+. |...+..++.. .+..+|++++|||+++... ++...++.|..+ ++.+..........++...
T Consensus 166 ah~~~g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~ 242 (742)
T TIGR03817 166 CHSYRGV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLT 242 (742)
T ss_pred hhhccCc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcc
Confidence 9999763 66655554443 4567899999999988754 677777777443 4433332222232222211
Q ss_pred ---h-------hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC--------CCCceeecCCCCHHHHHHHH
Q 007018 248 ---Q-------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHV 309 (621)
Q Consensus 248 ---~-------~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--------g~~~~~l~g~l~~~~R~~~l 309 (621)
. .........++...+..+.++||||+|+..++.++..|... +..+..+||++.+++|..++
T Consensus 243 ~~~~~~~~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie 322 (742)
T TIGR03817 243 ELTGENGAPVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELE 322 (742)
T ss_pred ccccccccccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHH
Confidence 0 00011222333333345789999999999999999988763 56788999999999999999
Q ss_pred HHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEec--cccHHHHHHHHHHhCC
Q 007018 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSK 387 (621)
Q Consensus 310 ~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~--~~e~~~l~~l~~~l~~ 387 (621)
++|++|++++|||||++++|||||++++||||++|.+...|+||+||+||.|+.|.+++++. +.|..++...+.++..
T Consensus 323 ~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 323 RALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred HHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987 4466677777777777
Q ss_pred CCcC
Q 007018 388 PIRA 391 (621)
Q Consensus 388 ~~~~ 391 (621)
++..
T Consensus 403 ~~e~ 406 (742)
T TIGR03817 403 PVEA 406 (742)
T ss_pred CCcc
Confidence 6544
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.2e-52 Score=441.36 Aligned_cols=354 Identities=30% Similarity=0.496 Sum_probs=320.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|+++-|..+++.+|.+.+|..||++|..|||.++.+-|+++.|..|+|||++|.+.+++.|.... ...+++|++|
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--~~~q~~Iv~P 101 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--SHIQKVIVTP 101 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--CcceeEEEec
Confidence 56899999999999999999999999999999999999999999999999999999999999987543 4678999999
Q ss_pred hHHHHHHHHHHHHHhhc-cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~-~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|||+|.|+.+.+..++. +.|++|.+++||+........++ .+.|+||||||+.+++.. ..++..++.++|+||||.|
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADkL 179 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADKL 179 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHh-cCCCccceeEEEeccHHhh
Confidence 99999999999988875 57999999999999887776664 478999999999988876 5789999999999999999
Q ss_pred cC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchh--------hH
Q 007018 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--------EK 251 (621)
Q Consensus 181 ~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~--------~k 251 (621)
.+ ..|..++..|+..+|..+|++.||||-|..+.+....+|++|.++++..+....-++.++++.+... .|
T Consensus 180 ~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 180 MDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred hchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHH
Confidence 98 6699999999999999999999999999999999999999999999998877777788877766543 35
Q ss_pred HHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCC
Q 007018 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331 (621)
Q Consensus 252 ~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlD 331 (621)
...|-+++... +-.+.||||+....|+-++.+|...|++|.++.|.|+|.+|..+++.+++-.++|||+||..+||||
T Consensus 260 lq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGID 337 (980)
T KOG4284|consen 260 LQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGID 337 (980)
T ss_pred HHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCC
Confidence 55555555554 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc-cHHHHHHH
Q 007018 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDL 381 (621)
Q Consensus 332 ip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~~~l~~l 381 (621)
-|++++|||.|.|.+..+|.||+||+||.|..|.+++|+... +...|..+
T Consensus 338 a~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 338 ADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999999999999999999999999875 43544443
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-51 Score=428.88 Aligned_cols=362 Identities=33% Similarity=0.473 Sum_probs=312.9
Q ss_pred CCccC----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC---CCCeE
Q 007018 23 GGFES----LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVR 95 (621)
Q Consensus 23 ~~f~~----l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~---~~g~~ 95 (621)
.+|.+ ...++.++..+...||..|||+|.+|||.++.+++++++||||||||++|++|++.+|..+.. ..|.+
T Consensus 132 ~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~ 211 (593)
T KOG0344|consen 132 LSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLR 211 (593)
T ss_pred ccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceE
Confidence 35555 346888999999999999999999999999999999999999999999999999999987653 56899
Q ss_pred EEEEcchHHHHHHHHHHHHHhh--ccCCCeEEEEEcCCChHHHHHH-HhCCCCEEEECchHHHHhHhhcC-CCCcCCcce
Q 007018 96 ALILSPTRDLALQTLKFTKELG--RYTDLRISLLVGGDSMESQFEE-LAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEY 171 (621)
Q Consensus 96 ~LIL~PtreLa~Q~~~~~~~l~--~~~~l~~~~~~gg~~~~~~~~~-l~~~~~IiV~Tpgrl~~~l~~~~-~~~l~~l~~ 171 (621)
++|+.|||+|+.|++..+.++. ..+++++..+.......+.... ....++|+|+||.++..++.... .+++.++.+
T Consensus 212 a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~ 291 (593)
T KOG0344|consen 212 ALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEW 291 (593)
T ss_pred EEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeee
Confidence 9999999999999999999998 6667766666554333322222 23458899999999998887521 368999999
Q ss_pred EEEeccccccCC-ChHHHHHHHHHhcc-cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEc-ch
Q 007018 172 VVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-RQ 248 (621)
Q Consensus 172 vViDEah~l~~~-gf~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-~~ 248 (621)
+|+||||++++. +|..++..|+..+. +...+-+||||++..+++|+...+.++..+.+.........+.+..+.| ..
T Consensus 292 lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse 371 (593)
T KOG0344|consen 292 LVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE 371 (593)
T ss_pred EeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc
Confidence 999999999999 99999999998764 4566789999999999999999999998888877655555666655444 45
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHH-HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L-~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa 327 (621)
..|.-++..++..-+ ..+++||+.+.+.+..|...| .-.++.+.++||..++.+|.+++++|+.|++.|||||++++
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~ 449 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLA 449 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhh
Confidence 678888888888774 568999999999999999999 56689999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhC
Q 007018 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (621)
Q Consensus 328 rGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~ 386 (621)
||+|+.++++|||||+|.+.-.|+||+||+||+|+.|.||+|++.+|++++..+.....
T Consensus 450 RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 450 RGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887765443
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-47 Score=422.32 Aligned_cols=324 Identities=20% Similarity=0.321 Sum_probs=258.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.||..|+|+|.++||.++.|+|+++.+|||||||++|++|++.. +..+|||+||++|+.|+...++.+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 69999999999999999999999999999999999999998742 346999999999999988887764
Q ss_pred CCeEEEEEcCCChHHHHH---HH-hCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCC--hHHHHHH--
Q 007018 121 DLRISLLVGGDSMESQFE---EL-AQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK-- 191 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~---~l-~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~g--f~~~l~~-- 191 (621)
++.+..+.++....++.. .+ .+.++|+++||+++.........+ ...++++|||||||+++++| |...+..
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 477777777766554332 22 346899999999986432111123 56789999999999999887 5555443
Q ss_pred -HHHhcccCCcEEEEEccCcHHHHHHHHhc--CCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCc
Q 007018 192 -ILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQ 268 (621)
Q Consensus 192 -il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k 268 (621)
+...+ ++.+++++|||+++.+...+... +.+|..+..... .+++....... .......+..++... ..+..
T Consensus 155 ~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v~~~-~~~~~~~l~~~l~~~-~~~~~ 228 (470)
T TIGR00614 155 SLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEVRRK-TPKILEDLLRFIRKE-FKGKS 228 (470)
T ss_pred HHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEEEeC-CccHHHHHHHHHHHh-cCCCc
Confidence 33444 46789999999999876554443 456655543322 23333222211 123455566666543 24556
Q ss_pred EEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChh
Q 007018 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (621)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~ 348 (621)
+||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+|++|.++.
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~ 308 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSME 308 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEeccccHHHHHHHH
Q 007018 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 349 ~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~ 382 (621)
.|+||+||+||.|..|.|++|+++.|...+..+.
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 9999999999999999999999999988776653
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.9e-47 Score=432.43 Aligned_cols=342 Identities=21% Similarity=0.295 Sum_probs=266.7
Q ss_pred CCCccC--CCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEE
Q 007018 22 SGGFES--LNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (621)
Q Consensus 22 ~~~f~~--l~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LI 98 (621)
...|.+ ++.+..+-..++. .||..++|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+||
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLV 505 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLV 505 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEE
Confidence 345664 4455556555555 69999999999999999999999999999999999999999853 336999
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh------CCCCEEEECchHHHH---hHhhcCCC-CcCC
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA------QNPDIIIATPGRLMH---HLSEVEDM-SLKS 168 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~------~~~~IiV~Tpgrl~~---~l~~~~~~-~l~~ 168 (621)
|+|+++|+.++...+.. .++....+.++....++...+. +.++|+|+||++|.. ++.....+ ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999855444443 3688999999988877655442 578999999999852 12111111 2345
Q ss_pred cceEEEeccccccCCC--hHHHHHHH--HHhcccCCcEEEEEccCcHHHHHHHHhcCC--CCceeeeccCCCCCCCceEE
Q 007018 169 VEYVVFDEADCLFGMG--FAEQLHKI--LGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLA 242 (621)
Q Consensus 169 l~~vViDEah~l~~~g--f~~~l~~i--l~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~ 242 (621)
+.+|||||||++++|| |...+..+ +....+..+++++|||+++.+...+...+. ++..+.. ....+++ .
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL--~ 656 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNL--W 656 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccce--E
Confidence 8899999999999998 66655442 334445788999999999988875555443 3433322 1222333 3
Q ss_pred EEEcchhhH-HHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 007018 243 FFTLRQEEK-HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (621)
Q Consensus 243 ~~~~~~~~k-~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (621)
|..+....+ ...+..++.... .+...||||.|+..++.++..|...|+.+..+||+|++.+|..+++.|..|+++|||
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 333333322 345555555432 356799999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 322 ~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
||+++++|||+|+|++||||++|.++..|+||+|||||.|.+|.|++|+.+.|+..+..+
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887655544
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.7e-46 Score=418.75 Aligned_cols=331 Identities=21% Similarity=0.327 Sum_probs=262.9
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 30 LSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 30 L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+.......|++ .||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+|+++|+.|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~d 80 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKD 80 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHH
Confidence 33334444444 69999999999999999999999999999999999999998843 2358999999999999
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC
Q 007018 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (621)
Q Consensus 109 ~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g 184 (621)
+.+.++.+ ++.+..+.++.....+... + .+..+++++||+++...... ..+...++++|||||||.++++|
T Consensus 81 qv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 81 QVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcccccccc
Confidence 98888765 4777777777766554332 2 34689999999998732211 13445678999999999999887
Q ss_pred --hHHH---HHHHHHhcccCCcEEEEEccCcHHHHHHHHh--cCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHH
Q 007018 185 --FAEQ---LHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 185 --f~~~---l~~il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
|... +..+...+ ++.+++++|||+++........ .+.+|....... ..+++ .+..+....+...++.
T Consensus 156 ~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~~ 229 (607)
T PRK11057 156 HDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPLDQLMR 229 (607)
T ss_pred CcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchHHHHHH
Confidence 4443 33444444 4688999999999877654333 345554433221 12333 3333344445566666
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
++... .+.++||||+|+++++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|++++
T Consensus 230 ~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~ 307 (607)
T PRK11057 230 YVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRF 307 (607)
T ss_pred HHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCE
Confidence 66554 5678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 338 VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
||+||+|.+...|+||+||+||.|.+|.|++|+++.|+..+..+
T Consensus 308 VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 308 VVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776654
No 40
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-47 Score=363.54 Aligned_cols=332 Identities=30% Similarity=0.545 Sum_probs=290.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+.+|.++=|.|+++++|-..||..|+.+|.++||...-|-|+++.|..|.|||++|++..++.|... .....+|++|.
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--~g~vsvlvmch 118 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--DGQVSVLVMCH 118 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--CCeEEEEEEec
Confidence 5689999999999999999999999999999999999999999999999999999999999988642 23578999999
Q ss_pred hHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|||||.|+.+...+|+++. ++++++.+||.......+.+++.|.|+|+||||++.+..+ +.+++++++.+|+||||.+
T Consensus 119 trelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 119 TRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred cHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHH
Confidence 9999999999999999887 7899999999999888888888999999999999988887 6899999999999999988
Q ss_pred cC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCC-CCceEEEEEcchhhHHHHHHHH
Q 007018 181 FG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQEEKHAALLYM 258 (621)
Q Consensus 181 ~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~-~~~~~~~~~~~~~~k~~~L~~~ 258 (621)
++ ......+++|.+..|...|+++||||+++++...++.++.+|..+.++.+.+.. -.+++.|+.+...+|...|.++
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 74 456889999999999999999999999999999999999999999998877654 4788889989888888888877
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
|... .-.+++||+.+.... . | +.+ ||+|++.+||+||..++.|
T Consensus 278 Ld~L--eFNQVvIFvKsv~Rl------------------------------~-f---~kr-~vat~lfgrgmdiervNi~ 320 (387)
T KOG0329|consen 278 LDVL--EFNQVVIFVKSVQRL------------------------------S-F---QKR-LVATDLFGRGMDIERVNIV 320 (387)
T ss_pred hhhh--hhcceeEeeehhhhh------------------------------h-h---hhh-hHHhhhhccccCcccceee
Confidence 7655 567999999876540 0 2 123 8999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc-HHHHHHHHHHhCCCCcCCC
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e-~~~l~~l~~~l~~~~~~~p 393 (621)
+|||.|.++++|+||+||+||.|..|.++.|++..+ -..+..++..+...+...|
T Consensus 321 ~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 321 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred eccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 999999999999999999999999999999999754 4445555544444333333
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=2.2e-45 Score=413.93 Aligned_cols=315 Identities=19% Similarity=0.231 Sum_probs=250.7
Q ss_pred CCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEE-EcchHHHHHHHHHHHHHhhc
Q 007018 41 KGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI-LSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~-dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LI-L~PtreLa~Q~~~~~~~l~~ 118 (621)
.||. |||||.++||.++.|+ ++++.+|||||||.+|.++++.. ... ...++.|| ++|||||+.|+++.++++++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--ccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 5998 9999999999999998 57788999999999776555532 211 22344555 77999999999999999987
Q ss_pred cC-----------------------CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-----------
Q 007018 119 YT-----------------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM----------- 164 (621)
Q Consensus 119 ~~-----------------------~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~----------- 164 (621)
.. ++++.+++||.....|+..+..+++|||+|+ +++.+ ..+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~s-r~L~~gYg~~~~~~ 162 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGS-RLLFSGYGCGFKSR 162 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcC-Cccccccccccccc
Confidence 55 4889999999999999999999999999995 44443 222
Q ss_pred -----CcCCcceEEEeccccccCCChHHHHHHHHHhc--ccC---CcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCC
Q 007018 165 -----SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (621)
Q Consensus 165 -----~l~~l~~vViDEah~l~~~gf~~~l~~il~~l--~~~---~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~ 234 (621)
.+++++++|||||| ++++|...+..|+..+ +.. +|+++||||+|..+..++...+.+|..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999975 442 69999999999988888888887777666544433
Q ss_pred CCCCceEEEEEcchhhHHHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHH-----HH
Q 007018 235 ISPDLKLAFFTLRQEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK-----IH 308 (621)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~-----~~ 308 (621)
....+.+ ++.+....+...++..+.... ..++++||||||++.++.++..|...++ ..+||+|++.+|. .+
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 3334443 445555555555444433222 3467899999999999999999998887 8999999999999 78
Q ss_pred HHHHhc----CC-------ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc-cEEEEEecc
Q 007018 309 VSRFRA----RK-------TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTS 372 (621)
Q Consensus 309 l~~F~~----g~-------~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~-G~~i~~v~~ 372 (621)
++.|++ |. ..||||||++++||||+. ++||++..| .+.|+||+||+||.|+. +..+.++.+
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999987 44 689999999999999997 899997766 58999999999999986 444666544
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-45 Score=425.27 Aligned_cols=338 Identities=23% Similarity=0.298 Sum_probs=264.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+.|++++|++++++++.+.||..|+|+|.+|++. ++.|++++++||||||||++|.+|++..+.. +.++|||+|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P 75 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVP 75 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 3689999999999999999999999999999998 7889999999999999999999999998853 668999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
+++|+.|+++.+++++. .++++..++|+...... ....++|+|+||+++..++... ...++++++||+||+|.+.
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~-~~~l~~v~lvViDE~H~l~ 150 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNG-APWLDDITCVVVDEVHLID 150 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcC-hhhhhhcCEEEEECccccC
Confidence 99999999998888764 47899999987654432 2356899999999998888752 3447899999999999999
Q ss_pred CCChHHHHHHHHHhc---ccCCcEEEEEccCcH--HHHHHHHhcCC----CCceeeecc--CCCCCCCceEEEEEcchhh
Q 007018 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLR----DPHLVRLDV--DTKISPDLKLAFFTLRQEE 250 (621)
Q Consensus 182 ~~gf~~~l~~il~~l---~~~~q~ll~SATl~~--~l~~~~~~~l~----~p~~i~~~~--~~~~~~~~~~~~~~~~~~~ 250 (621)
+.++...+..++..+ +...|++++|||+++ .+.+|....+- .|..+.... ........... .+....
T Consensus 151 d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~--~~~~~~ 228 (737)
T PRK02362 151 SANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQR--EVEVPS 228 (737)
T ss_pred CCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccc--cCCCcc
Confidence 988888877776554 567899999999975 44444432211 111111100 00000000000 011111
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC------------------------------------CCce
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG------------------------------------LEPS 294 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g------------------------------------~~~~ 294 (621)
+ ......+...+..++++||||+|+.+++.++..|.... ..+.
T Consensus 229 ~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva 307 (737)
T PRK02362 229 K-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAA 307 (737)
T ss_pred c-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEE
Confidence 1 22333444444567899999999999998887775431 3577
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----cC-----CCCChhHHHHHhcccCCCCCc--
Q 007018 295 VCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-----FPPKPKIFVHRVGRAARAGRT-- 363 (621)
Q Consensus 295 ~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~d-----~P~s~~~~~qrvGR~gR~G~~-- 363 (621)
++||+|++.+|..+++.|++|.++|||||+++++|+|+|..++||+ || .|.+..+|.||+|||||.|..
T Consensus 308 ~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~ 387 (737)
T PRK02362 308 FHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPY 387 (737)
T ss_pred eecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCC
Confidence 8999999999999999999999999999999999999999999997 76 588999999999999999875
Q ss_pred cEEEEEeccc
Q 007018 364 GTAFSFVTSE 373 (621)
Q Consensus 364 G~~i~~v~~~ 373 (621)
|.+++++.+.
T Consensus 388 G~~ii~~~~~ 397 (737)
T PRK02362 388 GEAVLLAKSY 397 (737)
T ss_pred ceEEEEecCc
Confidence 9999998775
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.2e-45 Score=425.84 Aligned_cols=342 Identities=24% Similarity=0.323 Sum_probs=257.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC----CCCeEEEEEcchHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALILSPTRDL 105 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~----~~g~~~LIL~PtreL 105 (621)
|++.+.+.+.+ +|..|||+|.++||.++.|+|+++.||||||||++|++|+++.+..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 8999999999999999999999999999999999999999998864221 346789999999999
Q ss_pred HHHHHHHHHH-------h----hccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC--CcCCcce
Q 007018 106 ALQTLKFTKE-------L----GRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--SLKSVEY 171 (621)
Q Consensus 106 a~Q~~~~~~~-------l----~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~--~l~~l~~ 171 (621)
+.|+++.+.. + +... ++++.+.+|+.+...+...+...++|+|+||++|..++.. +.+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~-~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS-PKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC-hhHHHHHhcCCE
Confidence 9999875432 2 2233 6788999999888877777788899999999999877754 222 4789999
Q ss_pred EEEeccccccCCChHHHHHHHHH----hcccCCcEEEEEccCcH--HHHHHHHhcCC--CCceee-eccCCCCCCCceEE
Q 007018 172 VVFDEADCLFGMGFAEQLHKILG----QLSENRQTLLFSATLPS--ALAEFAKAGLR--DPHLVR-LDVDTKISPDLKLA 242 (621)
Q Consensus 172 vViDEah~l~~~gf~~~l~~il~----~l~~~~q~ll~SATl~~--~l~~~~~~~l~--~p~~i~-~~~~~~~~~~~~~~ 242 (621)
|||||+|.+.+..+...+...+. ..+...|++++|||+++ .+..+...... .+..+. ++... .......
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~--~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARF--VKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCC--CccceEE
Confidence 99999999997765555444433 33467899999999975 33333322111 121111 11111 1111111
Q ss_pred EE-------EcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC------CCCceeecCCCCHHHHHHHH
Q 007018 243 FF-------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHV 309 (621)
Q Consensus 243 ~~-------~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~------g~~~~~l~g~l~~~~R~~~l 309 (621)
.. ..........+...+.+.+..+.++||||+|+..++.++..|... +..+..+||+|+++.|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 11 111122334455666666666789999999999999999999873 46789999999999999999
Q ss_pred HHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCC-CCccEEEEEec-cccH
Q 007018 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVT-SEDM 375 (621)
Q Consensus 310 ~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~-G~~G~~i~~v~-~~e~ 375 (621)
+.|++|+++|||||+++++|||+|++++||+|+.|.+...|+||+||+||. |..+.++++.. .+|.
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l 401 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDL 401 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhH
Confidence 999999999999999999999999999999999999999999999999986 44444444443 3443
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.9e-44 Score=415.74 Aligned_cols=322 Identities=21% Similarity=0.240 Sum_probs=260.8
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 29 ~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+..+...+.+ .+|. |||+|.+||+.++.+ +|++++|+||||||.+|++|++..+.. |.+++||+|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 445566666655 6995 999999999999985 799999999999999999999988764 678999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHH---HHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~---~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
|++||.|+++.++++....++++..++|+.+..++ ...+. +.++||||||..+ . ..+.++++++|||||+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeecc
Confidence 99999999999998877788999999988765443 33343 4699999999422 2 3577899999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHH
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
|++ .....+.+..++.+.|+++||||+++....++..++.++..+....... ..+...+..... ..+..
T Consensus 583 hrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~ 651 (926)
T TIGR00580 583 QRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVRE 651 (926)
T ss_pred ccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHH
Confidence 993 3445566777888999999999987776667777777877665433221 123333332221 22333
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
.+...+..+++++|||+++++++.++..|... ++.+..+||.|++.+|..++.+|++|+++|||||+++++|+|+|++
T Consensus 652 ~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v 731 (926)
T TIGR00580 652 AIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNA 731 (926)
T ss_pred HHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccC
Confidence 34344456889999999999999999999985 7889999999999999999999999999999999999999999999
Q ss_pred CEEEEcCCCC-ChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 336 DNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 336 ~~VI~~d~P~-s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
++||+++.|. +...|.||+||+||.|+.|.||+++.+.
T Consensus 732 ~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 732 NTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999874 6778999999999999999999998764
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3.5e-44 Score=405.92 Aligned_cols=320 Identities=22% Similarity=0.331 Sum_probs=261.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.||..++|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +..++||+|+++|+.|+.+.++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~~---- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRAA---- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHc----
Confidence 79999999999999999999999999999999999999998742 335899999999999998888775
Q ss_pred CCeEEEEEcCCChHHHHHH----HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC--hHHHH---HH
Q 007018 121 DLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQL---HK 191 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g--f~~~l---~~ 191 (621)
++.+..+.++.+..+.... ..+..+|+++||+++...... ..+...++++|||||||.+.++| |...+ ..
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 4778888888776654432 235789999999998643222 23456789999999999999877 55444 44
Q ss_pred HHHhcccCCcEEEEEccCcHHHHHHHHhcCC--CCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcE
Q 007018 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (621)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~ 269 (621)
+...+|. .+++++|||+++.+...+...+. ++..+.. ....+++ .+.......+...+..++... .+.++
T Consensus 156 l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~nl--~~~v~~~~~~~~~l~~~l~~~--~~~~~ 227 (591)
T TIGR01389 156 LAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPNL--RFSVVKKNNKQKFLLDYLKKH--RGQSG 227 (591)
T ss_pred HHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCCc--EEEEEeCCCHHHHHHHHHHhc--CCCCE
Confidence 4455554 45999999999888765555443 4433321 1122333 344444456677788888765 36789
Q ss_pred EEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhH
Q 007018 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (621)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~ 349 (621)
||||+|+..++.++..|...|+.+..+||+|++++|..+++.|.+|+++|||||+++++|||+|++++||+|++|.+...
T Consensus 228 IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~ 307 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLES 307 (591)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 350 ~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
|+|++||+||.|..|.|++++++.|...+..+
T Consensus 308 y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 308 YYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 99999999999999999999999988766554
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-44 Score=412.26 Aligned_cols=338 Identities=22% Similarity=0.288 Sum_probs=265.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.|++++|++.+.+.+.++||..|+|+|.++++. ++.|++++++||||||||++|.+|+++.+.. .+.++|||+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeCh
Confidence 688999999999999999999999999999986 7899999999999999999999999998764 35689999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~ 182 (621)
++|+.|+++.++.+. ..++++..++|+...... +.++++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCC
Confidence 999999999888775 358899999998765432 235789999999999887765 334588999999999999999
Q ss_pred CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCC---c-eEEEEEcchh--hH-HHHH
Q 007018 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD---L-KLAFFTLRQE--EK-HAAL 255 (621)
Q Consensus 183 ~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~---~-~~~~~~~~~~--~k-~~~L 255 (621)
.++...+..++..++...|++++|||+++. .+++. ++..+.+. ......+. + ...+...... .+ ...+
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~---~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV---SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc---CCCCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 899999999999999999999999999753 44443 23322111 11111110 0 0011111111 11 1233
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC---------------------------------CCCceeecCCCCH
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE---------------------------------GLEPSVCYGDMDQ 302 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~---------------------------------g~~~~~l~g~l~~ 302 (621)
...+.+.+..++++||||+|+..++.++..|... ...+.++||+|++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 3444455556889999999999998777665321 2347899999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE-------cCCCC-ChhHHHHHhcccCCCC--CccEEEEEecc
Q 007018 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------WDFPP-KPKIFVHRVGRAARAG--RTGTAFSFVTS 372 (621)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~-------~d~P~-s~~~~~qrvGR~gR~G--~~G~~i~~v~~ 372 (621)
++|..+.+.|++|.++|||||+++++|+|+|.+++||. ++.|. +...|.||+||+||.| ..|.+++++.+
T Consensus 308 ~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 308 TERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred HHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 99999999999999999999999999999999999993 55544 4678999999999975 56999999987
Q ss_pred ccH
Q 007018 373 EDM 375 (621)
Q Consensus 373 ~e~ 375 (621)
++.
T Consensus 388 ~~~ 390 (720)
T PRK00254 388 EEP 390 (720)
T ss_pred cch
Confidence 653
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=7.3e-43 Score=412.09 Aligned_cols=333 Identities=19% Similarity=0.201 Sum_probs=263.6
Q ss_pred HhhccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhh
Q 007018 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (621)
Q Consensus 15 ~~~~~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~ 88 (621)
.+++..++-.|. .-+.+..+...+.+| .|||+|.+|||.++.+ +|++++|+||||||.+|+.+++..+.
T Consensus 573 a~r~~~~~~~~~--~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-- 647 (1147)
T PRK10689 573 AQRAAKEGFAFK--HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-- 647 (1147)
T ss_pred HHHhhccCCCCC--CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--
Confidence 334444454552 224556666778899 5999999999999987 89999999999999999988877654
Q ss_pred CCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh----CCCCEEEECchHHHHhHhhcCCC
Q 007018 89 VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDM 164 (621)
Q Consensus 89 ~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tpgrl~~~l~~~~~~ 164 (621)
.|.+++||+||++||.|+++.+++.....++++.+++|+.+..++...+. ++++|+|+||+.+. ..+
T Consensus 648 ---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~------~~v 718 (1147)
T PRK10689 648 ---NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ------SDV 718 (1147)
T ss_pred ---cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh------CCC
Confidence 37889999999999999999998866666889999999888777665442 57999999997432 346
Q ss_pred CcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEE
Q 007018 165 SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF 244 (621)
Q Consensus 165 ~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~ 244 (621)
.++++++|||||+|++ |+. ..+.+..++.++|+++||||+++....++..++.++..+....... ..+...+.
T Consensus 719 ~~~~L~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r--~~v~~~~~ 791 (1147)
T PRK10689 719 KWKDLGLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR--LAVKTFVR 791 (1147)
T ss_pred CHhhCCEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC--CCceEEEE
Confidence 7889999999999995 332 3456777888999999999998888888888899998776544322 22333333
Q ss_pred EcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 007018 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (621)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (621)
.......... ++.+ +..+++++|||+++..++.+++.|... +..+..+||+|++.+|..++.+|++|+++||||
T Consensus 792 ~~~~~~~k~~---il~e-l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVa 867 (1147)
T PRK10689 792 EYDSLVVREA---ILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 (1147)
T ss_pred ecCcHHHHHH---HHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3222111112 2222 235789999999999999999999987 778999999999999999999999999999999
Q ss_pred cCcccccCCCCCCCEEEEcCCC-CChhHHHHHhcccCCCCCccEEEEEecc
Q 007018 323 TDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 323 TdvaarGlDip~v~~VI~~d~P-~s~~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
|+++++|||+|++++||..+.. .+...|+||+||+||.|+.|.||+++.+
T Consensus 868 TdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999999999999954332 3456799999999999999999988765
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=3.9e-42 Score=392.65 Aligned_cols=318 Identities=20% Similarity=0.258 Sum_probs=248.5
Q ss_pred HHHHHH-HHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 32 PNVFRA-IKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 32 ~~l~~~-l~~~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
..+.+. +...+|. ||++|.++++.|..+ .+++++|+||||||++|++|++..+. .|.+++|++||++
T Consensus 248 ~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~ 321 (681)
T PRK10917 248 GELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEI 321 (681)
T ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHH
Confidence 344444 4457885 999999999999987 37999999999999999999998875 3778999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCChHHH---HHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~---~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
||.|+++.++++....++++.+++||.+..+. ...+. +.++|+||||+.+.+ ...++++++||+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh
Confidence 99999999999998889999999999886443 33443 469999999988752 355789999999999994
Q ss_pred cCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHH
Q 007018 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~ 260 (621)
.......+...+..+++++||||+.+....+...+..++ ..++........+...+. . ..+...++..+.
T Consensus 396 -----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~--s~i~~~p~~r~~i~~~~~--~-~~~~~~~~~~i~ 465 (681)
T PRK10917 396 -----GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDV--SVIDELPPGRKPITTVVI--P-DSRRDEVYERIR 465 (681)
T ss_pred -----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCce--EEEecCCCCCCCcEEEEe--C-cccHHHHHHHHH
Confidence 223334444556678999999998665444433332232 222221111122333322 2 233345566676
Q ss_pred HhccCCCcEEEEecCh--------hhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccC
Q 007018 261 EHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~--------~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGl 330 (621)
+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|+
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 6667889999999954 4556777777765 47899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhHHHHHhcccCCCCCccEEEEEec
Q 007018 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (621)
Q Consensus 331 Dip~v~~VI~~d~P~-s~~~~~qrvGR~gR~G~~G~~i~~v~ 371 (621)
|+|++++||+++.|. ....+.||+||+||.|..|.|++++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 56788899999999999999999995
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-41 Score=385.10 Aligned_cols=319 Identities=18% Similarity=0.215 Sum_probs=245.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 32 ~~l~~~l~~~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
..+.+.+...+| .||++|.+||+.|+.+ .+.+++|+||||||++|++|++..+.. |.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 444566677899 5999999999999976 258999999999999999999988753 6789999999999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCChHH---HHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 106 ALQTLKFTKELGRYTDLRISLLVGGDSMES---QFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~---~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|.|+++.++++....++++.+++||.+... ....+ .++++|+|+||+.+.+ ...++++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 999999999998888999999999987665 33344 3468999999998752 4568899999999999943
Q ss_pred CCChHHHHHHHHHhcc--cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~--~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (621)
. . +...+..... ..+++++||||+.+....+... .+.....++.-......+...+ +... ....++..+
T Consensus 371 ~---~-qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~--~~l~~~~i~~~p~~r~~i~~~~--~~~~-~~~~~~~~i 441 (630)
T TIGR00643 371 V---E-QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVY--GDLDTSIIDELPPGRKPITTVL--IKHD-EKDIVYEFI 441 (630)
T ss_pred H---H-HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhc--CCcceeeeccCCCCCCceEEEE--eCcc-hHHHHHHHH
Confidence 2 1 2222333332 2689999999976543333222 2211111111111111222222 2222 235666777
Q ss_pred HHhccCCCcEEEEecCh--------hhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccccc
Q 007018 260 REHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~--------~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarG 329 (621)
.+.+..+.+++|||++. ..++.+++.|... ++.+..+||+|++.+|..++++|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 77777789999999876 4566777777653 6789999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCCCC-ChhHHHHHhcccCCCCCccEEEEEec
Q 007018 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (621)
Q Consensus 330 lDip~v~~VI~~d~P~-s~~~~~qrvGR~gR~G~~G~~i~~v~ 371 (621)
+|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999986 57788899999999999999999983
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-41 Score=388.73 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=257.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
.|++++|++.+++.+.+.||. |+|+|.++++.++.|++++++||||||||+++.+++++.+.. +.++||++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~r 75 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLR 75 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechH
Confidence 688999999999999999997 999999999999999999999999999999999999988764 56799999999
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC
Q 007018 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (621)
Q Consensus 104 eLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~ 183 (621)
+||.|+++.++++. ..++.+...+|+...... ....++|+|+||+++..++... ...+.++++||+||+|.+.+.
T Consensus 76 aLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 76 SLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCC
Confidence 99999999888764 457888888887654332 2356899999999998887653 345889999999999999988
Q ss_pred ChHHHHHHHHHh---cccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEE-----Ecchhh-HHHH
Q 007018 184 GFAEQLHKILGQ---LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TLRQEE-KHAA 254 (621)
Q Consensus 184 gf~~~l~~il~~---l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~-----~~~~~~-k~~~ 254 (621)
++...+..++.. ++...|++++|||+++. .+++. ++..+. +. ...... .+..... .+.... ....
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~-~~--~~~r~v-pl~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASL-IK--SNFRPV-PLKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCc-cC--CCCCCC-CeEEEEEecCeeeeccccccccc
Confidence 877777766554 45678999999999753 44443 222211 11 111111 1111110 011111 1122
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC-------------------------CCceeecCCCCHHHHHHHH
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-------------------------LEPSVCYGDMDQDARKIHV 309 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g-------------------------~~~~~l~g~l~~~~R~~~l 309 (621)
+..++.+....++++||||+|+..++.++..|.... ..+.++||+|++++|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445556655678899999999999999998886531 2367899999999999999
Q ss_pred HHHhcCCceEEEecCcccccCCCCCCCEEEEcCC---------CCChhHHHHHhcccCCCCC--ccEEEEEecccc-HHH
Q 007018 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSED-MAY 377 (621)
Q Consensus 310 ~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~---------P~s~~~~~qrvGR~gR~G~--~G~~i~~v~~~e-~~~ 377 (621)
+.|++|.++|||||+++++|+|+|.. .||+++. |.++.+|.||+|||||.|. .|.+++++...+ ..+
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 99999999999999999999999985 5555443 4578899999999999985 577888876543 444
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=3.2e-41 Score=398.99 Aligned_cols=298 Identities=21% Similarity=0.293 Sum_probs=243.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+ .|||+|+.++|.++.|+|+++.||||||||+ |++|++..+.. .+.++|||+|||+|+.|+++.++.++...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 477 6999999999999999999999999999996 66666656543 37889999999999999999999999988
Q ss_pred CCeEEEEEcCCCh-----HHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-----------C
Q 007018 121 DLRISLLVGGDSM-----ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (621)
Q Consensus 121 ~l~~~~~~gg~~~-----~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-----------~ 183 (621)
++.+..++||... ..+...+. ++++|+|+||++|.+++. .+....+++||+||||++++ +
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 9998888877653 23334444 469999999999998876 36677799999999999985 7
Q ss_pred ChH-HHHHHHHHhccc------------------------CCcEEEEEccCcHH-HHHHHHhcCCCCceeeeccCCCCCC
Q 007018 184 GFA-EQLHKILGQLSE------------------------NRQTLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISP 237 (621)
Q Consensus 184 gf~-~~l~~il~~l~~------------------------~~q~ll~SATl~~~-l~~~~~~~l~~p~~i~~~~~~~~~~ 237 (621)
||. +.+..++..++. .+|+++||||+++. +.. ..+.++..+.+........
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccC
Confidence 885 678888877764 68999999999864 432 1223444455544444456
Q ss_pred CceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhh---HHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc
Q 007018 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (621)
Q Consensus 238 ~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~---ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (621)
++.+.|+.+. ++...|..++... +.++||||+|+.. ++.++..|...|+++..+||+| ...+++|++
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 6777777655 5667777777654 4589999999887 9999999999999999999999 224699999
Q ss_pred CCceEEEe----cCcccccCCCCC-CCEEEEcCCCC------ChhHHHHHhcccCCC
Q 007018 315 RKTMFLIV----TDVAARGIDIPL-LDNVINWDFPP------KPKIFVHRVGRAARA 360 (621)
Q Consensus 315 g~~~ILV~----TdvaarGlDip~-v~~VI~~d~P~------s~~~~~qrvGR~gR~ 360 (621)
|+++|||| ||+++||||+|+ +++|||||+|. ....|.||+||+...
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 99999999 699999999999 89999999998 778899999999743
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.1e-41 Score=374.81 Aligned_cols=313 Identities=16% Similarity=0.161 Sum_probs=239.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHH---------HHHHHHHHHhhh-CCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 47 TPIQRKTMPLILSGADVVAMARTGSGKTAA---------FLVPMLQRLNQH-VPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~a---------fllp~l~~L~~~-~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
..+|+++++.++.|+++++.|+||||||.+ |+.|.+..+..- ....+.+++|++||||||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999997 555555554321 1223568999999999999999887765
Q ss_pred hcc---CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHH
Q 007018 117 GRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (621)
Q Consensus 117 ~~~---~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il 193 (621)
..+ .++.+.+.+||... .+........+|+|+|++.. ...++++++|||||||++..++ +.+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 433 46778889999873 22222334679999997621 2357899999999999998876 4555555
Q ss_pred Hhc-ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch---------hhHHHHHHHHHHHhc
Q 007018 194 GQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EEKHAALLYMIREHI 263 (621)
Q Consensus 194 ~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---------~~k~~~L~~~l~~~~ 263 (621)
..+ +..+|+++||||+|..+..+ ..++.+|..+.+.. .....+++.|..... ......++..+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 544 34469999999999888777 56888888887753 222445655543321 111222334443322
Q ss_pred -cCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHH-hcCCceEEEecCcccccCCCCCCCEEE
Q 007018 264 -SSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRF-RARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 264 -~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F-~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
..++++|||++++..++.+++.|... ++.+..+||+|++. .+++++| ++|+.+||||||+|+||||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 24568999999999999999999987 78999999999985 4567777 689999999999999999999999999
Q ss_pred EcC---CCC---------ChhHHHHHhcccCCCCCccEEEEEeccccHH
Q 007018 340 NWD---FPP---------KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (621)
Q Consensus 340 ~~d---~P~---------s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~ 376 (621)
+++ .|. |...|+||+||+||. ++|.|+.|+++++..
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 998 554 788999999999999 799999999988753
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.7e-40 Score=387.28 Aligned_cols=322 Identities=22% Similarity=0.289 Sum_probs=232.7
Q ss_pred EEcCCCchHHHHHHHHHHHHHhhhC--------CCCCeEEEEEcchHHHHHHHHHHHHH----h-------h-ccCCCeE
Q 007018 65 AMARTGSGKTAAFLVPMLQRLNQHV--------PQGGVRALILSPTRDLALQTLKFTKE----L-------G-RYTDLRI 124 (621)
Q Consensus 65 ~~a~TGSGKT~afllp~l~~L~~~~--------~~~g~~~LIL~PtreLa~Q~~~~~~~----l-------~-~~~~l~~ 124 (621)
++||||||||+||++|+++++.... ...+.++|||+|+++|+.|+++.++. + + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999999999999987532 12468999999999999999987764 2 1 1247899
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC----hHHHHHHHHHhcccCC
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG----FAEQLHKILGQLSENR 200 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g----f~~~l~~il~~l~~~~ 200 (621)
...+|+.+..++.+.+.+.++|+|+||++|..++.+.....++++++|||||+|.+.+.. +...+..+...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999998888777778899999999999988765323468999999999999999753 3345555555567789
Q ss_pred cEEEEEccCcHHHHHHHHhcCC-CCceeeeccCCCCCCCceEEEEEcchhhH--------------------HHHHHHHH
Q 007018 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEEK--------------------HAALLYMI 259 (621)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~k--------------------~~~L~~~l 259 (621)
|+|++|||+++ ..++++.... .|..+ +.........+... +.+....+ ...+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~I-v~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTV-VNPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEE-ECCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 3555543322 34433 22222212223221 22111100 01111122
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCC---------------------------------CCceeecCCCCHHHHH
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------LEPSVCYGDMDQDARK 306 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g---------------------------------~~~~~l~g~l~~~~R~ 306 (621)
...+..+.++||||||+..|+.++..|.+.. ..+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2223356889999999999999999887631 1146789999999999
Q ss_pred HHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHH----HHH
Q 007018 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL----DLH 382 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~----~l~ 382 (621)
.+.+.|++|++++||||+.+++|||||.+++||||+.|.+...|+||+||+||. ..|.+..++.+.+...+. -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 233333334433332222 244
Q ss_pred HHhCCCCc
Q 007018 383 LFLSKPIR 390 (621)
Q Consensus 383 ~~l~~~~~ 390 (621)
..+...+.
T Consensus 397 ~~l~g~iE 404 (1490)
T PRK09751 397 CMFAGRLE 404 (1490)
T ss_pred HHhcCCCC
Confidence 55554444
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8.4e-40 Score=366.92 Aligned_cols=337 Identities=28% Similarity=0.360 Sum_probs=270.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh---CCCCCeEEEEEcchHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH---VPQGGVRALILSPTRDLA 106 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~---~~~~g~~~LIL~PtreLa 106 (621)
|++.+.+.+..+ |..|||.|.+|||.|.+|+++++.||||||||+|+++|++..|... ....|..+|+|+|-|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999998 9999999999999999999999999999999999999999999865 234578999999999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC-CCCcCCcceEEEeccccccCCCh
Q 007018 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADCLFGMGF 185 (621)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~-~~~l~~l~~vViDEah~l~~~gf 185 (621)
..+...+...+..+|+.+.+-+|.+...+..+...+.|+|+|+||+.|.-++.... .-.+.++.+||+||.|.+.+..-
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999988888887777767778899999999999987775421 12389999999999999986554
Q ss_pred HHHHHHHHHhc---ccCCcEEEEEccCcHHHHHHHHhcCCC--Cc-eeeeccCCCCCCCceEEEEEcchh-----hHHHH
Q 007018 186 AEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRD--PH-LVRLDVDTKISPDLKLAFFTLRQE-----EKHAA 254 (621)
Q Consensus 186 ~~~l~~il~~l---~~~~q~ll~SATl~~~l~~~~~~~l~~--p~-~i~~~~~~~~~~~~~~~~~~~~~~-----~k~~~ 254 (621)
..++.--+.++ ....|.+++|||..+. .+.++..... +. ++.+... . .+.+........ .-...
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~--k--~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAA--K--KLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccC--C--cceEEEEecCCccccccchhHH
Confidence 44444333332 2288999999998532 3333332222 22 2222221 1 122222222211 23344
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC-CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip 333 (621)
++..+.+.++....+|||+||+..+|.+...|+..+ ..+..+||+++.+.|..+.++|++|+.+++|||..++-|||+.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 556666666666789999999999999999999987 7889999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhcccCC-CCCccEEEEEecc
Q 007018 334 LLDNVINWDFPPKPKIFVHRVGRAAR-AGRTGTAFSFVTS 372 (621)
Q Consensus 334 ~v~~VI~~d~P~s~~~~~qrvGR~gR-~G~~G~~i~~v~~ 372 (621)
+++.||+|..|.+...++||+||+|+ .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999996 4666667777666
No 55
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2e-39 Score=384.26 Aligned_cols=290 Identities=19% Similarity=0.271 Sum_probs=226.6
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH
Q 007018 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (621)
Q Consensus 34 l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~ 113 (621)
+.+.+.+.....|||+|+.++|.++.|+|+++.||||||||+ |.+|+...+.. .+.++|||+|||+||.|+++.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHH
Confidence 344444433346999999999999999999999999999997 77787766653 3788999999999999999999
Q ss_pred HHhhccCCCeEE---EEEcCCChHHHH---HHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC----
Q 007018 114 KELGRYTDLRIS---LLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---- 182 (621)
Q Consensus 114 ~~l~~~~~l~~~---~~~gg~~~~~~~---~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~---- 182 (621)
+.++...++.+. .++||.+..++. ..+. ++++|+|+||++|.+++.. +.. +++++|+||||++++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC-CCCEEEEeChHhhhhcccc
Confidence 999987776544 467888776543 3333 4699999999999988765 222 899999999999997
Q ss_pred -------CChHHH-HHHHH----------------------HhcccCCc--EEEEEcc-CcHHHHHHHHhcCCCCceeee
Q 007018 183 -------MGFAEQ-LHKIL----------------------GQLSENRQ--TLLFSAT-LPSALAEFAKAGLRDPHLVRL 229 (621)
Q Consensus 183 -------~gf~~~-l~~il----------------------~~l~~~~q--~ll~SAT-l~~~l~~~~~~~l~~p~~i~~ 229 (621)
+||.++ +..++ ..++..+| +++|||| .|..+.. ..+.++..+.+
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v 294 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEV 294 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEe
Confidence 788764 44432 34556666 5679999 5665442 23445555555
Q ss_pred ccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecCh---hhHHHHHHHHHHCCCCceeecCCCCHHHHH
Q 007018 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDARK 306 (621)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~---~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~ 306 (621)
........++.+.|..+.. +...|.++++.. +.++||||+|+ +.|+.++..|...|+++..+||++++
T Consensus 295 ~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred cCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 5554455567777665443 345677777654 46899999999 99999999999999999999999974
Q ss_pred HHHHHHhcCCceEEEe----cCcccccCCCCC-CCEEEEcCCC
Q 007018 307 IHVSRFRARKTMFLIV----TDVAARGIDIPL-LDNVINWDFP 344 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~----TdvaarGlDip~-v~~VI~~d~P 344 (621)
.++++|++|+++|||| ||+++||||+|+ +++|||||+|
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 5799999999999999 599999999999 8999999987
No 56
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.5e-39 Score=357.89 Aligned_cols=320 Identities=21% Similarity=0.203 Sum_probs=252.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+|+|..++|.++.|+ ++.+.||+|||++|.+|++.... .|..++|++||++||.|.++++..+..+.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 466 49999999999999999 99999999999999999998754 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcC------------------------CCCcCCcceEEEe
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE------------------------DMSLKSVEYVVFD 175 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~------------------------~~~l~~l~~vViD 175 (621)
++++++++||.+.. .+....+++|+|+|.+.| +++|...= ..-...+.++|||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997643 344556899999999887 55654320 1123567899999
Q ss_pred cccccc-C--------------C---ChHHHHHHHHHhc--------------------------------c--------
Q 007018 176 EADCLF-G--------------M---GFAEQLHKILGQL--------------------------------S-------- 197 (621)
Q Consensus 176 Eah~l~-~--------------~---gf~~~l~~il~~l--------------------------------~-------- 197 (621)
|+|.++ + . .+......+...+ +
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999765 0 0 0111111111000 0
Q ss_pred ---------------------------------------cC--------------------------------------C
Q 007018 198 ---------------------------------------EN--------------------------------------R 200 (621)
Q Consensus 198 ---------------------------------------~~--------------------------------------~ 200 (621)
++ .
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 00 1
Q ss_pred cEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHH
Q 007018 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVE 280 (621)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve 280 (621)
.+.+||||.+....++...+.-++..|..... ........++.+...+|...|...+......+.++||||+|+..++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 45789999998888888888777655544332 2222333455667788999999999876556788999999999999
Q ss_pred HHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC---CCC-----EEEEcCCCCChhHHHH
Q 007018 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVH 352 (621)
Q Consensus 281 ~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip---~v~-----~VI~~d~P~s~~~~~q 352 (621)
.++..|...|+++..+||.+++ |+..+..|..+...|+||||+|+||+||+ +|. +||+|++|.+...|.|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 9999999999999999998654 44455566666667999999999999999 565 9999999999999999
Q ss_pred HhcccCCCCCccEEEEEecccc
Q 007018 353 RVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 353 rvGR~gR~G~~G~~i~~v~~~e 374 (621)
|+||+||+|.+|.+++|++.+|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999865
No 57
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.9e-39 Score=391.05 Aligned_cols=324 Identities=18% Similarity=0.242 Sum_probs=256.1
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH
Q 007018 33 NVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (621)
Q Consensus 33 ~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~ 111 (621)
.+.+.+++ .|| .|||+|+.++|.++.|+|+++.||||||||++++++++.... .|.++|||+||++|+.|+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----KGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----cCCeEEEEECHHHHHHHHHH
Confidence 34455555 799 599999999999999999999999999999966655543321 36789999999999999999
Q ss_pred HHHHhhccC--CCeEEEEEcCCChHHHHH---HHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC---
Q 007018 112 FTKELGRYT--DLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (621)
Q Consensus 112 ~~~~l~~~~--~l~~~~~~gg~~~~~~~~---~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~--- 182 (621)
.++.++... ++.+..++||.+..++.. .+. +.++|+|+||+++.+++... ...+++++||||||++++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceecccccc
Confidence 999998765 467778889988776543 343 45999999999998877642 237899999999999986
Q ss_pred --------CChHHHHHH----HHH----------------------hcccCCc-EEEEEccCcHH--HHHHHHhcCCCCc
Q 007018 183 --------MGFAEQLHK----ILG----------------------QLSENRQ-TLLFSATLPSA--LAEFAKAGLRDPH 225 (621)
Q Consensus 183 --------~gf~~~l~~----il~----------------------~l~~~~q-~ll~SATl~~~--l~~~~~~~l~~p~ 225 (621)
+||.+++.. |+. .++..+| ++++|||+++. ... .+.++.
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~----l~~~~l 293 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVK----LYRELL 293 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHH----HhhcCe
Confidence 688887764 432 2355666 57799999853 333 345666
Q ss_pred eeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhh---HHHHHHHHHHCCCCceeecCCCCH
Q 007018 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQ 302 (621)
Q Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~---ve~l~~~L~~~g~~~~~l~g~l~~ 302 (621)
.+.+........++.+.|+.+....+ ..|+.+++.. +.++||||+|++. |+.++..|...|+++..+||+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 67776666666678888877665555 5677777654 4689999999876 489999999999999999995
Q ss_pred HHHHHHHHHHhcCCceEEEec----CcccccCCCCC-CCEEEEcCCCC---ChhHHHHHh-------------cccCCCC
Q 007018 303 DARKIHVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFPP---KPKIFVHRV-------------GRAARAG 361 (621)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~T----dvaarGlDip~-v~~VI~~d~P~---s~~~~~qrv-------------GR~gR~G 361 (621)
|..++++|++|+++||||| ++++||||+|+ |++|||||+|. +.+.|.|-. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8889999999999999999 59999999998 99999999998 777666655 9999999
Q ss_pred CccEEEEEeccccHHHH
Q 007018 362 RTGTAFSFVTSEDMAYL 378 (621)
Q Consensus 362 ~~G~~i~~v~~~e~~~l 378 (621)
.++.++..+.+.++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred CcchhHHHhHHHHHHHH
Confidence 88777755555555443
No 58
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-38 Score=365.37 Aligned_cols=308 Identities=19% Similarity=0.272 Sum_probs=242.5
Q ss_pred HHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH-HHhhccCCCeEEEEE
Q 007018 50 QRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLV 128 (621)
Q Consensus 50 Q~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~-~~l~~~~~l~~~~~~ 128 (621)
-.+.+..+..+.++++.|+||||||.+|.+++++... .+.+++|+.|||++|.|+++.+ +.++...+..++..+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 3455666777899999999999999999999998763 2458999999999999999966 566666677777777
Q ss_pred cCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc-cccCCChHH-HHHHHHHhcccCCcEEEEE
Q 007018 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAE-QLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 129 gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah-~l~~~gf~~-~l~~il~~l~~~~q~ll~S 206 (621)
++++ ....+++|+|+|||+|++++.. ...++++++|||||+| ++++.++.- .+..+...+++..|+++||
T Consensus 82 r~~~------~~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 82 RGEN------KVSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred cccc------ccCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 7654 2345689999999999999876 4679999999999999 577766543 3455666678899999999
Q ss_pred ccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHH-HHHHHHHHhcc-CCCcEEEEecChhhHHHHHH
Q 007018 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHIS-SDQQTLIFVSTKHHVEFLNV 284 (621)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~ 284 (621)
||++... ...++.++..+.+.... ..+.+.|..+...++.. .+...+...+. ..+++|||++++..++.++.
T Consensus 154 ATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~ 227 (819)
T TIGR01970 154 ATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQE 227 (819)
T ss_pred CCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 9998763 24566666565544321 12556666555444321 12222222221 35789999999999999999
Q ss_pred HHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCC---------------
Q 007018 285 LFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK--------------- 346 (621)
Q Consensus 285 ~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s--------------- 346 (621)
.|.. .++.+..+||+|++++|..+++.|++|+.+||||||++++|||||+|++||++++|..
T Consensus 228 ~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 307 (819)
T TIGR01970 228 QLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307 (819)
T ss_pred HHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEE
Confidence 9987 4788999999999999999999999999999999999999999999999999999853
Q ss_pred ---hhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 347 ---PKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 347 ---~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
-..++||+||+||. ++|.||.+++.++...
T Consensus 308 ~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 308 RISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred EECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 23489999999999 7999999999876543
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.5e-38 Score=356.82 Aligned_cols=322 Identities=20% Similarity=0.237 Sum_probs=244.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|..+++.++.|+ ++.+.||+|||++|++|++.... .|.+++|++||++||.|.++++..+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al-----~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL-----EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH-----cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 476 59999999999998886 99999999999999999986554 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-C-----------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------- 182 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~----------- 182 (621)
|+++++++||.+...+.+. ..+++|+++||++| ++++... ....+..+.++|+||||+++ +
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 9999999999884433333 35699999999999 5555431 11346889999999999886 1
Q ss_pred ----CChHHHHHHHHHhcccC--------C--------------------------------------------------
Q 007018 183 ----MGFAEQLHKILGQLSEN--------R-------------------------------------------------- 200 (621)
Q Consensus 183 ----~gf~~~l~~il~~l~~~--------~-------------------------------------------------- 200 (621)
..+......+...+... .
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 01222222232222110 0
Q ss_pred -----------------------------------------------------------cEEEEEccCcHHHHHHHHhcC
Q 007018 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (621)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (621)
.+.+||+|....-.+|...+-
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 233445554333333333321
Q ss_pred CCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
-..+.+....+....-....+.+...+|..+|...+......+.++||||+|+..++.++..|...|+++..+||.+.
T Consensus 386 --l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 --MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred --CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 122222221111110011223445677999999999876567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCcccccCCC---CCCC-----EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDI---PLLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~TdvaarGlDi---p~v~-----~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
+.++..+...++.| .|+||||+|+||+|| |.|. +||+|++|.+...|+||+||+||+|.+|.+++|++.+
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98888777777666 799999999999999 6898 9999999999999999999999999999999999986
Q ss_pred cH
Q 007018 374 DM 375 (621)
Q Consensus 374 e~ 375 (621)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 53
No 60
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=1.4e-37 Score=354.04 Aligned_cols=395 Identities=19% Similarity=0.197 Sum_probs=284.0
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g---~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
.||+.|.++++.++.+ +++++.|+||||||.+|+.++.+.+.. |.++|||+||++|+.|+++.+++. ++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 4899999999999974 789999999999999999888877653 678999999999999999888763 35
Q ss_pred CeEEEEEcCCChHHHHHH----HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-----ChHHHHHHH
Q 007018 122 LRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----GFAEQLHKI 192 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-----gf~~~l~~i 192 (621)
..+..++||.+..+.... ..+.++|+|+||++++ .+++++++|||||+|...-. .|..+-..+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 789999999876554333 2457899999999875 56789999999999976522 222233344
Q ss_pred HHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-------HHHHHHHHHHHhccC
Q 007018 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-------KHAALLYMIREHISS 265 (621)
Q Consensus 193 l~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-------k~~~L~~~l~~~~~~ 265 (621)
+.....+.+++++|||++... +....-+....+.+.............++.++... -...|+..+++.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s--~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLES--LANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHH--HHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 455567899999999976443 34333334555555544322222334444443211 235678888888888
Q ss_pred CCcEEEEecChh------------------------------------------------------------hHHHHHHH
Q 007018 266 DQQTLIFVSTKH------------------------------------------------------------HVEFLNVL 285 (621)
Q Consensus 266 ~~k~IVF~~t~~------------------------------------------------------------~ve~l~~~ 285 (621)
++++|||+|++. .++.+.+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 999999987521 34577778
Q ss_pred HHHC--CCCceeecCCCCH--HHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE--EcCCCCC----------hhH
Q 007018 286 FREE--GLEPSVCYGDMDQ--DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPPK----------PKI 349 (621)
Q Consensus 286 L~~~--g~~~~~l~g~l~~--~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI--~~d~P~s----------~~~ 349 (621)
|... +.++..+|+++.+ .++..+++.|++|+.+|||+|+++++|+|+|++++|+ +.|.+.+ ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8775 7788999999875 5788999999999999999999999999999999985 4454433 256
Q ss_pred HHHHhcccCCCCCccEEEEEecc-----------ccHHHHHHHHHHhCCCCcCCCCHHH------------HHhhhhhHH
Q 007018 350 FVHRVGRAARAGRTGTAFSFVTS-----------EDMAYLLDLHLFLSKPIRAAPSEEE------------VLLDMDGVM 406 (621)
Q Consensus 350 ~~qrvGR~gR~G~~G~~i~~v~~-----------~e~~~l~~l~~~l~~~~~~~p~~~~------------~~~~~~~~~ 406 (621)
|+|++||+||.+..|.+++.... +|...|+.-++..++.+.+||.... +...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 89999999999999999865542 3455677777778888888885432 222223333
Q ss_pred HHHHHHH-hcCCccccccchhHHHHhhHHHHHHHHhhHhhHHHHHHHHHHHH
Q 007018 407 SKIDQAI-ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457 (621)
Q Consensus 407 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 457 (621)
..+.... .....++|+.|..+.+..+.+..+++.+......+++.......
T Consensus 606 ~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~~~~~~~~~l~~~~~ 657 (679)
T PRK05580 606 ALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSPSRADLQKLLRAWLA 657 (679)
T ss_pred HHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3333222 12345899999999999888877777664444444444443333
No 61
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.1e-38 Score=362.95 Aligned_cols=306 Identities=17% Similarity=0.237 Sum_probs=241.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH-HHhhccCCCeEEEEEc
Q 007018 51 RKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVG 129 (621)
Q Consensus 51 ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~-~~l~~~~~l~~~~~~g 129 (621)
.+.+..+.+++++++.|+||||||++|.+|+++.... +.+++|+.|||++|.|+++.+ +.++...+..+...++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 3556667788999999999999999999999976422 237999999999999999976 5567777888888888
Q ss_pred CCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc-ccCCCh-HHHHHHHHHhcccCCcEEEEEc
Q 007018 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGF-AEQLHKILGQLSENRQTLLFSA 207 (621)
Q Consensus 130 g~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~-l~~~gf-~~~l~~il~~l~~~~q~ll~SA 207 (621)
+++.. ...+.|+|+|||+|++++.. ...++++++|||||+|+ .++..+ ...+..++..+++..|+++|||
T Consensus 86 ~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 86 AESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred Ccccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 76532 34578999999999999875 46799999999999996 444433 2334566677888999999999
Q ss_pred cCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHH-HHHHHHHHhcc-CCCcEEEEecChhhHHHHHHH
Q 007018 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVL 285 (621)
Q Consensus 208 Tl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~ 285 (621)
|++... + ..++.++..+.+... . ..+.+.|..+....+.. .+...+...+. ..+.+|||++++..++.+++.
T Consensus 158 Tl~~~~--l-~~~~~~~~~I~~~gr--~-~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 158 TLDNDR--L-QQLLPDAPVIVSEGR--S-FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CCCHHH--H-HHhcCCCCEEEecCc--c-ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHH
Confidence 998652 3 355666655554432 1 23566666665544443 22222333222 368899999999999999999
Q ss_pred HHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCC----------------
Q 007018 286 FRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK---------------- 346 (621)
Q Consensus 286 L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s---------------- 346 (621)
|.. .++.+..+||+|++.+|..++..|++|+.+||||||++++|||||+|++||++++|..
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQR 311 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEe
Confidence 987 5788999999999999999999999999999999999999999999999999887743
Q ss_pred --hhHHHHHhcccCCCCCccEEEEEeccccHH
Q 007018 347 --PKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (621)
Q Consensus 347 --~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~ 376 (621)
-..|+||+||+||. .+|.||.++++.+..
T Consensus 312 iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred echhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 34799999999998 699999999987654
No 62
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=329.87 Aligned_cols=291 Identities=29% Similarity=0.441 Sum_probs=233.1
Q ss_pred eEEEEEcchHHHHHHHHHHHHHhhccC---CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcc
Q 007018 94 VRALILSPTRDLALQTLKFTKELGRYT---DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (621)
Q Consensus 94 ~~~LIL~PtreLa~Q~~~~~~~l~~~~---~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~ 170 (621)
+.++|+-|+|||++|+++.+++|-..+ .++..+++||.....|...+..+.+|+|+||||+.+.+.. ..+.+..+.
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 679999999999999999888876554 4677789999999999999999999999999999999986 467899999
Q ss_pred eEEEeccccccCCChHHHHHHHHHhccc------CCcEEEEEccCcH-HHHHHHHhcCCCCceeeeccCCCCCCCceEEE
Q 007018 171 YVVFDEADCLFGMGFAEQLHKILGQLSE------NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (621)
Q Consensus 171 ~vViDEah~l~~~gf~~~l~~il~~l~~------~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~ 243 (621)
++|+||||-++..|+.+.+..+...+|. ..|.++.|||+.. ++..+....+.-|..+.+..+...++...+..
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999999999999888888764 4689999999842 23334445556666666655554444333333
Q ss_pred EEcchh--hHH-------------------------------------HHHHHHHHHhccCCCcEEEEecChhhHHHHHH
Q 007018 244 FTLRQE--EKH-------------------------------------AALLYMIREHISSDQQTLIFVSTKHHVEFLNV 284 (621)
Q Consensus 244 ~~~~~~--~k~-------------------------------------~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~ 284 (621)
..+.+. ... ..-+..++++ .-.+.||||.|+..|+.+.+
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHHH
Confidence 222110 000 1112223332 35689999999999999999
Q ss_pred HHHHCC---CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCC
Q 007018 285 LFREEG---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (621)
Q Consensus 285 ~L~~~g---~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G 361 (621)
++.+.| +.|.++||+..+.+|+..++.|..+.++.|||||+++|||||.++..+||.-+|.+...|+||+||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 998874 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeccccHHHHHHHHHHhCC
Q 007018 362 RTGTAFSFVTSEDMAYLLDLHLFLSK 387 (621)
Q Consensus 362 ~~G~~i~~v~~~e~~~l~~l~~~l~~ 387 (621)
+-|.+|+++........+.....-++
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr 629 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGR 629 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCC
Confidence 99999999987655555555444443
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.4e-38 Score=348.60 Aligned_cols=303 Identities=16% Similarity=0.168 Sum_probs=226.1
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
...|+|+|.++++.++.++++++.+|||||||+++...+...+.. ...++|||+||++|+.||.+.+++++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 347999999999999999999999999999999765433222222 2338999999999999999999998765555
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcE
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ 202 (621)
.+..+.+|.... .+++|+|+||+++.+... ..++++++||+||||++... .+..++..+++.+++
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~ 252 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFK 252 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccch----hHHHHHHhhhccceE
Confidence 666677775432 457999999999976442 23678999999999998764 456777777778899
Q ss_pred EEEEccCcHHHHHHH-HhcCCCCceeeeccCCCC----CCCceEEEE-----------------------EcchhhHHHH
Q 007018 203 LLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKI----SPDLKLAFF-----------------------TLRQEEKHAA 254 (621)
Q Consensus 203 ll~SATl~~~l~~~~-~~~l~~p~~i~~~~~~~~----~~~~~~~~~-----------------------~~~~~~k~~~ 254 (621)
++||||+++...... ..++-.|....+...... ...+....+ .+....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999865322111 111112222222111000 000000000 0111223344
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec-CcccccCCCC
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIP 333 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T-dvaarGlDip 333 (621)
+..++......+.+++|||.+.+|++.+++.|...|.++..+||++++++|..+++.|++|+..||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 445555544567889999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred CCCEEEEcCCCCChhHHHHHhcccCCCCCcc
Q 007018 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364 (621)
Q Consensus 334 ~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G 364 (621)
++++||++++|.+...|+||+||++|.+..+
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999987654
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.3e-38 Score=334.02 Aligned_cols=300 Identities=22% Similarity=0.268 Sum_probs=213.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh-hccCCCeEEEEEcCCCh-------
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLRISLLVGGDSM------- 133 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l-~~~~~l~~~~~~gg~~~------- 133 (621)
++++.||||||||++|++|++..+... .+.+++|++|+++|+.|+++.++.+ +. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccC
Confidence 589999999999999999999886542 3568999999999999999988886 43 23334443221
Q ss_pred -----HHHHHHHh------CCCCEEEECchHHHHhHhhc-CC--CCcC--CcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 134 -----ESQFEELA------QNPDIIIATPGRLMHHLSEV-ED--MSLK--SVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 134 -----~~~~~~l~------~~~~IiV~Tpgrl~~~l~~~-~~--~~l~--~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
........ -.++|+|+||+.+++.+... .. ..+. ..++|||||+|.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 11111111 13679999999998776541 11 1111 23789999999999865443 566665554
Q ss_pred -cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEc--chhhHHHHHHHHHHHhccCCCcEEEEec
Q 007018 198 -ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVS 274 (621)
Q Consensus 198 -~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~--~~~~k~~~L~~~l~~~~~~~~k~IVF~~ 274 (621)
.+.|+++||||+|+.+.+++......+.....+.... .....+.+..+ ....+...+..++.. ...++++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEEC
Confidence 4789999999999888888776543322211111100 00111222111 122344455555543 345789999999
Q ss_pred ChhhHHHHHHHHHHCCC--CceeecCCCCHHHHHH----HHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChh
Q 007018 275 TKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKI----HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (621)
Q Consensus 275 t~~~ve~l~~~L~~~g~--~~~~l~g~l~~~~R~~----~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~ 348 (621)
|+++++.++..|.+.+. .+..+||++++.+|.. +++.|++|+..||||||++++|+||| +++||++..| ++
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999998776 4899999999999876 48999999999999999999999996 7899998776 68
Q ss_pred HHHHHhcccCCCCCc----cEEEEEecccc
Q 007018 349 IFVHRVGRAARAGRT----GTAFSFVTSED 374 (621)
Q Consensus 349 ~~~qrvGR~gR~G~~----G~~i~~v~~~e 374 (621)
.|+||+||+||.|+. |.+++|....+
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999999999865 36777766543
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.5e-37 Score=347.38 Aligned_cols=321 Identities=21% Similarity=0.214 Sum_probs=234.2
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
|. .|+++|..+... .+++.++.++||+|||++|++|++..... |..++|++|+++||.|+.+++..+.++.|
T Consensus 68 gl-rpydVQlig~l~--l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GM-FPYDVQVLGAIV--LHQGNIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CC-CccHHHHHHHHH--hcCCceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 44 355555555544 44457999999999999999998766543 55799999999999999999999999999
Q ss_pred CeEEEEEcCCC---hHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEeccccccCC---------
Q 007018 122 LRISLLVGGDS---MESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM--------- 183 (621)
Q Consensus 122 l~~~~~~gg~~---~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~~~--------- 183 (621)
+.+.++++|.. +..+......+++|++|||++| ++.+... ....+..+.++|+||||.++-.
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99999887632 3333344446899999999999 5655331 1344788999999999988511
Q ss_pred -------ChHHHHHHHHHhcccC--------C------------------------------------------------
Q 007018 184 -------GFAEQLHKILGQLSEN--------R------------------------------------------------ 200 (621)
Q Consensus 184 -------gf~~~l~~il~~l~~~--------~------------------------------------------------ 200 (621)
.+......+...+.+. .
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 1222222333322211 0
Q ss_pred -------------------------------------------------------------cEEEEEccCcHHHHHHHHh
Q 007018 201 -------------------------------------------------------------QTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 201 -------------------------------------------------------------q~ll~SATl~~~l~~~~~~ 219 (621)
.+.+||+|....-.+|...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 2334444443333344332
Q ss_pred cCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCC
Q 007018 220 GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD 299 (621)
Q Consensus 220 ~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~ 299 (621)
+- -..+.+....+....-....+.+...+|..+++..+.+....+.++||||+|+..++.++..|...|+++..+||.
T Consensus 380 Y~--l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~ 457 (762)
T TIGR03714 380 YS--LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQ 457 (762)
T ss_pred hC--CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 21 1122222211111101111344556779999999998877788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEecCcccccCCCC---------CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEe
Q 007018 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370 (621)
Q Consensus 300 l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip---------~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v 370 (621)
+++.++..+...++.| .|+||||+|+||+||| ++.+|++|++|..... +||+||+||+|.+|.++.|+
T Consensus 458 ~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~i 534 (762)
T TIGR03714 458 NAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFV 534 (762)
T ss_pred ChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEE
Confidence 9999888777766666 6999999999999999 9999999999987766 99999999999999999999
Q ss_pred ccccH
Q 007018 371 TSEDM 375 (621)
Q Consensus 371 ~~~e~ 375 (621)
+.+|.
T Consensus 535 s~eD~ 539 (762)
T TIGR03714 535 SLEDD 539 (762)
T ss_pred ccchh
Confidence 98764
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-36 Score=313.92 Aligned_cols=330 Identities=25% Similarity=0.342 Sum_probs=250.6
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+..+++.+|.......+.+ +++++.|||-|||+.+++-+..+|... .| ++|+|+||+-|+.|.++.+.++.....
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3447899999988888877 999999999999999998888888763 34 899999999999999999999887777
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q 201 (621)
-.++.++|..+.++....| ...+|+|+||..+.+-+.. +.+++.++.++|||||||.....-.-.+..-.....+++.
T Consensus 87 ~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 7888999988877665554 5589999999999988877 5899999999999999998765434444443444456778
Q ss_pred EEEEEccCcHHHHHHH---HhcCCCCceeeeccCCCCCC---CceEEEEEcc----------------------------
Q 007018 202 TLLFSATLPSALAEFA---KAGLRDPHLVRLDVDTKISP---DLKLAFFTLR---------------------------- 247 (621)
Q Consensus 202 ~ll~SATl~~~l~~~~---~~~l~~p~~i~~~~~~~~~~---~~~~~~~~~~---------------------------- 247 (621)
++.+|||+......+. ...--+-..++...+....+ .....++.+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999854433332 22111111111111100000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007018 248 -------------------------------------------------------------------------------- 247 (621)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (621)
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence
Q ss_pred ---------------------hhhHHHHHHHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHCCCCce-eec------
Q 007018 248 ---------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCY------ 297 (621)
Q Consensus 248 ---------------------~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~------ 297 (621)
...|+..+..++++.+ ..+.++|||++.+..++.+...|...+..+. .+.
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 0013444444454444 3467899999999999999999999988874 333
Q ss_pred --CCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc--
Q 007018 298 --GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-- 373 (621)
Q Consensus 298 --g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-- 373 (621)
.+|+|.+...++++|++|+++|||||++++.|||||.+|.||.|++.+|+-.++||.|||||. +.|.++++++.+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 369999999999999999999999999999999999999999999999999999999999996 899999999987
Q ss_pred cHHHHH
Q 007018 374 DMAYLL 379 (621)
Q Consensus 374 e~~~l~ 379 (621)
|..|++
T Consensus 484 deayy~ 489 (542)
T COG1111 484 DEAYYY 489 (542)
T ss_pred HHHHHH
Confidence 444443
No 67
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9.6e-37 Score=338.89 Aligned_cols=321 Identities=23% Similarity=0.285 Sum_probs=244.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|.. |+++|..+.+.++.|+ ++.++||+|||++|.+|++-.... |.+++|++||++||.|.++++..+.++.
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 4764 9999999999988876 999999999999999999533332 5579999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcC-----CCCcCCcceEEEeccccccC-C--------C-
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFG-M--------G- 184 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~-----~~~l~~l~~vViDEah~l~~-~--------g- 184 (621)
++++++++||.+...+... -.++|+|+||++| ++++...- .+.++.+.++|+||+|+++- . |
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886654433 3589999999999 88887631 24678999999999998862 0 1
Q ss_pred ------hHHHHHHHHHhccc---------CC-------------------------------------------------
Q 007018 185 ------FAEQLHKILGQLSE---------NR------------------------------------------------- 200 (621)
Q Consensus 185 ------f~~~l~~il~~l~~---------~~------------------------------------------------- 200 (621)
.......|...+.. .+
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 11111222222110 00
Q ss_pred -----------------------------------------------------------cEEEEEccCcHHHHHHHHhcC
Q 007018 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (621)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (621)
.+.+||+|......+|...+-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 223444444433333333332
Q ss_pred CCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
-+ ++.+....+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 363 l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 363 LE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 11 11121111110000011122334568888888887777789999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCceEEEecCcccccCCCCC-------CCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPL-------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~-------v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
+.+|+..+..|..+...|+|||++|+||+||+. ..+||+++.|.+...|.||.||+||+|.+|.+..|++.+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5699999999999999999999999999999999999875
Q ss_pred H
Q 007018 375 M 375 (621)
Q Consensus 375 ~ 375 (621)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 3
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.2e-36 Score=324.48 Aligned_cols=324 Identities=24% Similarity=0.374 Sum_probs=258.5
Q ss_pred HHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 38 IKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 38 l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
|.. .||...+|-|.++|..+++|+|+++..|||.||++||.+|++-. .| -+|||+|-.+|.......++..
T Consensus 9 L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G-~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 9 LKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EG-LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CC-CEEEECchHHHHHHHHHHHHHc
Confidence 443 59999999999999999999999999999999999999998744 35 4899999999999888888776
Q ss_pred hccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC--hHHHH-
Q 007018 117 GRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQL- 189 (621)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g--f~~~l- 189 (621)
+ +....+.++-+.+++...+ .+..++++-+|+++..--.. +.+.--.+.++||||||.++.|| |....
T Consensus 81 G----i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 G----IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred C----ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 5 8888888887766654433 34589999999998632111 12335578899999999999998 65544
Q ss_pred --HHHHHhcccCCcEEEEEccCcHHHHHHHHhcCC--CCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHH-hcc
Q 007018 190 --HKILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-HIS 264 (621)
Q Consensus 190 --~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~-~~~ 264 (621)
..+...+| +.+++.+|||.++.+..-+...|. .+..+....+ .+++........ .-...+. ++.+ ...
T Consensus 156 ~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~--~~~~q~~-fi~~~~~~ 228 (590)
T COG0514 156 RLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKG--EPSDQLA-FLATVLPQ 228 (590)
T ss_pred HHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---Cchhhhhhhhcc--cHHHHHH-HHHhhccc
Confidence 45556666 788999999999988887766554 5544433322 233332222221 1112222 3332 223
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P 344 (621)
..+..||||.|++.||.++..|...|+.+..+|++|+.++|..+.++|..++..|+|||.+.++|||-|+|++|||||+|
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP 308 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLP 308 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCC
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 345 ~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
.+.+.|.|-+||+||.|.+..|++|+++.|......+
T Consensus 309 ~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 309 GSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred CCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 9999999999999999999999999999997755443
No 69
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-35 Score=325.29 Aligned_cols=371 Identities=19% Similarity=0.224 Sum_probs=259.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH----
Q 007018 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---- 139 (621)
Q Consensus 64 v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---- 139 (621)
++.|+||||||++|+..+.+.+. .|.++|||+|+++|+.|+++.+++. ++..+..++|+.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHH
Confidence 46899999999999877655554 3678999999999999999888763 24678888888766544332
Q ss_pred HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-----CChHHHHHHHHHhcccCCcEEEEEccCcHHHH
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-----~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (621)
..+.++|||||++.++ .++.++++|||||+|...- +.|..+-..++.....+.+++++|||++ ++
T Consensus 73 ~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs--le 142 (505)
T TIGR00595 73 KNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS--LE 142 (505)
T ss_pred HcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC--HH
Confidence 3456899999999775 4678999999999998762 2233333344444456889999999965 44
Q ss_pred HHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh----HHHHHHHHHHHhccCCCcEEEEecChhh------------
Q 007018 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE----KHAALLYMIREHISSDQQTLIFVSTKHH------------ 278 (621)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~----k~~~L~~~l~~~~~~~~k~IVF~~t~~~------------ 278 (621)
.+....-+....+.+.............++.+.... -...|+..+++.+..++++|||+|++..
T Consensus 143 s~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 143 SYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 454443334444444433222223344444444332 2356788888888899999999775432
Q ss_pred ------------------------------------------------HHHHHHHHHHC--CCCceeecCCCCHHHH--H
Q 007018 279 ------------------------------------------------VEFLNVLFREE--GLEPSVCYGDMDQDAR--K 306 (621)
Q Consensus 279 ------------------------------------------------ve~l~~~L~~~--g~~~~~l~g~l~~~~R--~ 306 (621)
++.+.+.|.+. +.++..+|+++.+..+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 47788888876 6788899999887655 8
Q ss_pred HHHHHHhcCCceEEEecCcccccCCCCCCCEEE--EcCCCC----------ChhHHHHHhcccCCCCCccEEEEEe-ccc
Q 007018 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDFPP----------KPKIFVHRVGRAARAGRTGTAFSFV-TSE 373 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI--~~d~P~----------s~~~~~qrvGR~gR~G~~G~~i~~v-~~~ 373 (621)
.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|... ....|+|++||+||.++.|.+++.. .|+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999985 666422 2456899999999999999988543 333
Q ss_pred ----------cHHHHHHHHHHhCCCCcCCCC------------HHHHHhhhhhHHHHHHHHHhcCCccccccchhHHHHh
Q 007018 374 ----------DMAYLLDLHLFLSKPIRAAPS------------EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (621)
Q Consensus 374 ----------e~~~l~~l~~~l~~~~~~~p~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 431 (621)
++..|+.-++..++.+.+||. ++.+...+..+...+.+....+..++|+.|..+.+..
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lgP~~~~~~k~~ 462 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIA 462 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEEeCCccccchhhc
Confidence 334455556666677778873 2223333333333333322234568999999999998
Q ss_pred hHHHHHHHHhhHhhHHHHHHH
Q 007018 432 SDRVREIIDSSADLNSLQRTC 452 (621)
Q Consensus 432 ~~~~~~~~~~~~~~~~l~~~~ 452 (621)
+.+.++++.++.....+++..
T Consensus 463 ~~~r~~~l~k~~~~~~~~~~l 483 (505)
T TIGR00595 463 GRYRYQILLKSKSFLVLQKLV 483 (505)
T ss_pred CeeEEEEEEEcCCHHHHHHHH
Confidence 887777766654444444433
No 70
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.7e-34 Score=335.61 Aligned_cols=325 Identities=24% Similarity=0.320 Sum_probs=243.0
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+...|+++|..++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3347999999999988887 99999999999999999999888742 456899999999999999999988765555
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q 201 (621)
..+..++|+.+.... ..+..+++|+|+||+.+...+.. ..+++.++++|||||||++........+...+......++
T Consensus 87 ~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 677888887766543 44456789999999999877654 4678899999999999998754333333344444445677
Q ss_pred EEEEEccCcHH---HHHHHHhcCCC------------------Cceeeecc-------------------------C-CC
Q 007018 202 TLLFSATLPSA---LAEFAKAGLRD------------------PHLVRLDV-------------------------D-TK 234 (621)
Q Consensus 202 ~ll~SATl~~~---l~~~~~~~l~~------------------p~~i~~~~-------------------------~-~~ 234 (621)
+++||||+... +.+.+...... +....+.. . ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999997322 22222211100 00000000 0 00
Q ss_pred CCC-C--c------------eEEE--------------------------------------------------------
Q 007018 235 ISP-D--L------------KLAF-------------------------------------------------------- 243 (621)
Q Consensus 235 ~~~-~--~------------~~~~-------------------------------------------------------- 243 (621)
..+ . + ....
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 000 0 0 0000
Q ss_pred ----------------EEcchhhHHHHHHHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCC------
Q 007018 244 ----------------FTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD------ 299 (621)
Q Consensus 244 ----------------~~~~~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~------ 299 (621)
.......|...|..+|.+.. ..+.++||||+++..+++++..|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 00011224555666665544 467899999999999999999999999999999886
Q ss_pred --CCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 300 --MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 300 --l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
|++.+|..++.+|++|+.+|||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.++.++..+.
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986 489999998754
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-34 Score=306.52 Aligned_cols=290 Identities=19% Similarity=0.221 Sum_probs=204.9
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc----CCC
Q 007018 49 IQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY----TDL 122 (621)
Q Consensus 49 iQ~~aip~il~g~d--vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~----~~l 122 (621)
+|.++++.+..+.+ +++.||||||||++|++|++.. +.++++++|+++|+.|+++.++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 7889999999999999998842 335899999999999999988777533 245
Q ss_pred eEEEEEcCCChHH---HH-----------------HH-HhCCCCEEEECchHHHHhHhhcC---C-C---CcCCcceEEE
Q 007018 123 RISLLVGGDSMES---QF-----------------EE-LAQNPDIIIATPGRLMHHLSEVE---D-M---SLKSVEYVVF 174 (621)
Q Consensus 123 ~~~~~~gg~~~~~---~~-----------------~~-l~~~~~IiV~Tpgrl~~~l~~~~---~-~---~l~~l~~vVi 174 (621)
.+..+.|. .... .. .. ....+.|+++||+.|..++.... . . .+.++++|||
T Consensus 73 ~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 55555553 2211 00 01 12468889999998866554311 0 0 1578999999
Q ss_pred eccccccCCC-----hHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhc--CCCCceeeeccC---------------
Q 007018 175 DEADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVD--------------- 232 (621)
Q Consensus 175 DEah~l~~~g-----f~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~--------------- 232 (621)
||+|.+...+ +.-....++.......+++++|||+|+.+.+..... ++.|... +...
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNK 230 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhcccc
Confidence 9999987433 222344455544556799999999999988877654 4444322 2211
Q ss_pred ----CCCCCCceEEEEEcchhhHHHHH---HHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHCC--CCceeecCCCC
Q 007018 233 ----TKISPDLKLAFFTLRQEEKHAAL---LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMD 301 (621)
Q Consensus 233 ----~~~~~~~~~~~~~~~~~~k~~~L---~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g--~~~~~l~g~l~ 301 (621)
....+.+.+.+.. ....+...+ ...+.+.+ ..++++||||+|+.+++.++..|+..+ +.+..+||.++
T Consensus 231 ~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~ 309 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP 309 (357)
T ss_pred ccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC
Confidence 0011345554544 333333333 33333322 256799999999999999999999865 56788999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccC
Q 007018 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~g 358 (621)
+..|... ++.+||||||+++||||+|.+ +|| ++ |.+...|+||+||+|
T Consensus 310 ~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9988654 478999999999999999986 666 56 889999999999997
No 72
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4.1e-33 Score=321.16 Aligned_cols=352 Identities=27% Similarity=0.348 Sum_probs=274.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
....+..++.+.|...|+++|.+|+..+.+|+++|+..+||||||++|++|+++.+.... ..++|+|.||++||..+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 444568888999999999999999999999999999999999999999999999998743 34899999999999999
Q ss_pred HHHHHHhhccCC--CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC---CCcCCcceEEEeccccccCC-
Q 007018 110 LKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGM- 183 (621)
Q Consensus 110 ~~~~~~l~~~~~--l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~---~~l~~l~~vViDEah~l~~~- 183 (621)
.+.+.++....+ +....+.|.....+......+.|+|++++|..|..++..... +.++++++||+||+|-.-.-
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999887776 777777777666655566788999999999999875554222 34788999999999986532
Q ss_pred -----ChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcc---------hh
Q 007018 184 -----GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------QE 249 (621)
Q Consensus 184 -----gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~~ 249 (621)
....++..+++..+.+.|+|+.|||+... .+++..+.+.+....++.+..... ....+..-+ ..
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~-~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRG-LRYFVRREPPIRELAESIRR 289 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCC-ceEEEEeCCcchhhhhhccc
Confidence 13455666666667889999999998654 456666655444333333332222 222222222 12
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHH----HHHHHCC----CCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN----VLFREEG----LEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~----~~L~~~g----~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (621)
.....+..++...+..+-++|+|+.++..++.++ ..+...+ ..+...+++|...+|..+...|+.|+..+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 3445555566666667899999999999999996 4444445 5677889999999999999999999999999
Q ss_pred ecCcccccCCCCCCCEEEEcCCCC-ChhHHHHHhcccCCCCCccEEEEEeccccH--HHHHHHHHHhC
Q 007018 322 VTDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDM--AYLLDLHLFLS 386 (621)
Q Consensus 322 ~TdvaarGlDip~v~~VI~~d~P~-s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~--~~l~~l~~~l~ 386 (621)
+|.++.-|+||..++.||.+..|. +...|.||+||+||.++.+..+..+..+.+ .|....+.++.
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999999999999999 899999999999999988777777765433 44444445554
No 73
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=295.29 Aligned_cols=338 Identities=24% Similarity=0.297 Sum_probs=269.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
-...++.+++.+.+-|+..||+.+.|+|..|+.. ++.|.|.++.++|+||||++.-++-+.++.. .|.+.|+|+|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvP 269 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVP 269 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEeh
Confidence 4678899999999999999999999999999987 7899999999999999999988888888775 4788999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH----HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~----~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
.-+||.|-++.+++--...++.++.-+|........+ .-..++||||+|++-+-+++.. .-.+.+++.|||||.
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g~~lgdiGtVVIDEi 347 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--GKDLGDIGTVVIDEI 347 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--CCcccccceEEeeee
Confidence 9999999999777655788899988888755443321 1234689999999999877775 367999999999999
Q ss_pred ccccCCChHHHHHHHH---HhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcc-hhhHHH
Q 007018 178 DCLFGMGFAEQLHKIL---GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHA 253 (621)
Q Consensus 178 h~l~~~gf~~~l~~il---~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~-~~~k~~ 253 (621)
|.+-+.....++.-++ +.+-+..|.+.+|||..+. .++++..--++ +..+. ...| ++.+.+.++ ..+|..
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~l--V~y~~--RPVp-lErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKL--VLYDE--RPVP-LERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCee--EeecC--CCCC-hhHeeeeecCchHHHH
Confidence 9998754444544443 4445689999999998554 45665543333 33322 2233 344444444 667777
Q ss_pred HHHHHHHHhcc------CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 007018 254 ALLYMIREHIS------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (621)
Q Consensus 254 ~L~~~l~~~~~------~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa 327 (621)
.+..+++.... -.+|||||++++..|.+++..|...|+++...|++|+..+|+.+...|.++++.++|+|.+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 77777764332 257999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEEcCC-----CCChhHHHHHhcccCCCCC--ccEEEEEeccc
Q 007018 328 RGIDIPLLDNVINWDF-----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (621)
Q Consensus 328 rGlDip~v~~VI~~d~-----P~s~~~~~qrvGR~gR~G~--~G~~i~~v~~~ 373 (621)
-|+|+|.-. ||+-.+ --++..|.|+.||+||-+- .|.+|+++.|.
T Consensus 502 AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999643 332221 2478999999999999765 59999999875
No 74
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-33 Score=312.61 Aligned_cols=318 Identities=18% Similarity=0.241 Sum_probs=225.1
Q ss_pred CChHHHHHHHHHHhc-C--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 45 VPTPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 45 ~ptpiQ~~aip~il~-g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
.|+|+|.+++..+.. | +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 489999999998874 3 4689999999999999775543 33 24599999999999999998888865555
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhh-------cCCCCcCCcceEEEeccccccCCChHHHHHHHHH
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~-------~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~ 194 (621)
..+..++|+.... .....+|+|+|+..+.....+ +..+.-..+++||+||||++-. ..+..++.
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~ 397 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLT 397 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHH
Confidence 6666677654321 123478999999877532211 1123345789999999999854 44555666
Q ss_pred hcccCCcEEEEEccCcHHHH--HHHHhcCCCCceeeeccCC----CCCCCceEE--EEE---------------------
Q 007018 195 QLSENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDT----KISPDLKLA--FFT--------------------- 245 (621)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~--~~~~~~l~~p~~i~~~~~~----~~~~~~~~~--~~~--------------------- 245 (621)
.+. ....+++|||+...-. ..... +-.|.++..+-.. ......... .+.
T Consensus 398 ~l~-a~~RLGLTATP~ReD~~~~~L~~-LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 398 IVQ-AHCKLGLTATLVREDDKITDLNF-LIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred hcC-cCcEEEEeecCcccCCchhhhhh-hcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 554 4457999999853211 11111 1234443332111 000111111 111
Q ss_pred cchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceEEEecC
Q 007018 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (621)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILV~Td 324 (621)
.....|...+..+++.+...+.++||||.+..+++.++..|. +..+||++++.+|..+++.|++| .+++||+|+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 112235556666666554578899999999999998888772 46799999999999999999975 789999999
Q ss_pred cccccCCCCCCCEEEEcCCC-CChhHHHHHhcccCCCCCccEE-------EEEeccc--cHHHHHHHHHHhC
Q 007018 325 VAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTA-------FSFVTSE--DMAYLLDLHLFLS 386 (621)
Q Consensus 325 vaarGlDip~v~~VI~~d~P-~s~~~~~qrvGR~gR~G~~G~~-------i~~v~~~--e~~~l~~l~~~l~ 386 (621)
++.+|||+|++++||+++.| .+...|+||+||++|.+..|.+ |+|++++ |+.|...-+.||-
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999999999988 5999999999999999876664 9999986 4455555555654
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.7e-33 Score=314.36 Aligned_cols=343 Identities=24% Similarity=0.277 Sum_probs=258.8
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 27 ~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
.+.+++.+..-+...|+..+.|-|+.++...+ .++|+++++|||||||+.+++.++..+.++ +.++++|||+++|
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkAL 88 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKAL 88 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHH
Confidence 34478889999999999888888888887654 569999999999999999999999999874 6789999999999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh
Q 007018 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (621)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf 185 (621)
|.+.++.++++ ...|+++...+|+...... ...+++|+|+||+++..++.+. ..-+..+++||+||+|.+.+..-
T Consensus 89 a~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~-~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 89 AEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKR-PSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcC-cchhhcccEEEEeeeeecCCccc
Confidence 99999988843 3568999999998765442 2467999999999998777764 33578999999999999998755
Q ss_pred HHHHHHHHHhcc---cCCcEEEEEccCcHHHHHHHHhcCCCCc--eeeeccCCCCCCCceEEEEEcc------hhhHHHH
Q 007018 186 AEQLHKILGQLS---ENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLR------QEEKHAA 254 (621)
Q Consensus 186 ~~~l~~il~~l~---~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~~------~~~k~~~ 254 (621)
...+..|+..+. ...|++.+|||+|+. .+++...-.++. .++...-....+ ....++... +......
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~-~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVP-YVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCc-cceEEEEecCccccccccchHH
Confidence 556666655543 447999999999864 334333222222 111111111111 122222222 1224466
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC-------------------------------------CCCceeec
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCY 297 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-------------------------------------g~~~~~l~ 297 (621)
++..+...++.++++||||+++..+...+..|... -..+..+|
T Consensus 242 ~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHh 321 (766)
T COG1204 242 ALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHH 321 (766)
T ss_pred HHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccc
Confidence 77778888889999999999999999888888730 01256789
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE----EcC-----CCCChhHHHHHhcccCCCCCc--cEE
Q 007018 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWD-----FPPKPKIFVHRVGRAARAGRT--GTA 366 (621)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI----~~d-----~P~s~~~~~qrvGR~gR~G~~--G~~ 366 (621)
.+|+.+.|..+.+.|+.|.++||+||+.+|.|+|+|.-..|| -|+ .+.++-+++|..|||||-|-. |.+
T Consensus 322 AGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~ 401 (766)
T COG1204 322 AGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEA 401 (766)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcE
Confidence 999999999999999999999999999999999999755554 566 566788999999999998764 777
Q ss_pred EEEecc-ccHHHHHH
Q 007018 367 FSFVTS-EDMAYLLD 380 (621)
Q Consensus 367 i~~v~~-~e~~~l~~ 380 (621)
+++.+. ++..++.+
T Consensus 402 ~i~~~~~~~~~~~~~ 416 (766)
T COG1204 402 IILATSHDELEYLAE 416 (766)
T ss_pred EEEecCccchhHHHH
Confidence 777744 44444433
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.8e-32 Score=314.61 Aligned_cols=303 Identities=18% Similarity=0.255 Sum_probs=215.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc----hHHHHHHHHHHHHH-hhccCCCe
Q 007018 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP----TRDLALQTLKFTKE-LGRYTDLR 123 (621)
Q Consensus 49 iQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P----treLa~Q~~~~~~~-l~~~~~l~ 123 (621)
+-.+.++.+..++.+++.|+||||||. .+|.+..-.. . .....+++.-| +++||.|+.+.+.. ++...|+.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-~-g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-R-GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-C-CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 334555666667778889999999999 5774422111 1 11113334446 56888888877664 55444433
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc-cccCCChHHH-HHHHHHhcccCCc
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSENRQ 201 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah-~l~~~gf~~~-l~~il~~l~~~~q 201 (621)
+ . .+.+ ...++.|+|+|||+|++++.. ...++++++||||||| ++++++|.-. +..++... ++.|
T Consensus 154 v----r---f~~~---~s~~t~I~v~TpG~LL~~l~~--d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlK 220 (1294)
T PRK11131 154 V----R---FNDQ---VSDNTMVKLMTDGILLAEIQQ--DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLK 220 (1294)
T ss_pred e----c---Cccc---cCCCCCEEEEChHHHHHHHhc--CCccccCcEEEecCccccccccchHHHHHHHhhhcC-CCce
Confidence 2 1 1111 245789999999999999876 3459999999999999 6888887653 44443332 4689
Q ss_pred EEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchh------hHHHHHHHHHHHhc-cCCCcEEEEec
Q 007018 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE------EKHAALLYMIREHI-SSDQQTLIFVS 274 (621)
Q Consensus 202 ~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~------~k~~~L~~~l~~~~-~~~~k~IVF~~ 274 (621)
+|+||||++. ..|.+.+.+.| .+.+.... . .+.+.|..+... +....++..+.... ...+.+|||++
T Consensus 221 vILmSATid~--e~fs~~F~~ap-vI~V~Gr~--~-pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAP-IIEVSGRT--Y-PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCC-EEEEcCcc--c-cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999975 36666665555 45554322 2 245556554321 22333443333221 34678999999
Q ss_pred ChhhHHHHHHHHHHCCCC---ceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcC---------
Q 007018 275 TKHHVEFLNVLFREEGLE---PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD--------- 342 (621)
Q Consensus 275 t~~~ve~l~~~L~~~g~~---~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d--------- 342 (621)
++..++.+++.|...++. +..+||+|++.+|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999988765 5689999999999998875 57889999999999999999999999986
Q ss_pred ------CC---CChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 343 ------FP---PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 343 ------~P---~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
+| .|...|.||+||+||. ++|.||.+++++++..
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 34 3457899999999999 6999999999877543
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=8e-30 Score=287.34 Aligned_cols=320 Identities=21% Similarity=0.262 Sum_probs=235.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--.-=.+.. .-++.++||+|||++|.+|++..+.. |..++|++||++||.|.++++..+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCC-CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 354 377777766544444 46999999999999999999977653 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcCCCCc-----CCcceEEEeccccccC------------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFG------------ 182 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~~~~l-----~~l~~vViDEah~l~~------------ 182 (621)
|+++.+++||.+...+.... .++|+||||++| ++++...-.+++ ..+.++|+||||.++-
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 99999999998877664443 689999999999 999986423444 5899999999998861
Q ss_pred ----CChHHHHHHHHHhcccC--------------CcEEEEEc-------------------------------------
Q 007018 183 ----MGFAEQLHKILGQLSEN--------------RQTLLFSA------------------------------------- 207 (621)
Q Consensus 183 ----~gf~~~l~~il~~l~~~--------------~q~ll~SA------------------------------------- 207 (621)
......+..++..+... .+.+.+|-
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 01222333333333211 12222222
Q ss_pred -------------------------------------------------------------------------------c
Q 007018 208 -------------------------------------------------------------------------------T 208 (621)
Q Consensus 208 -------------------------------------------------------------------------------T 208 (621)
|
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 1
Q ss_pred CcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH
Q 007018 209 LPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (621)
Q Consensus 209 l~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~ 288 (621)
....-.+|...|-- .++.+....+....-....+.....+|..++...+.+....+.|+||||+|+..++.++..|..
T Consensus 389 a~te~~Ef~~iY~l--~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 389 ADTEAYEFQQIYNL--EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred ChhHHHHHHHHhCC--CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 11111111111100 0000000000000000112333456788999999988888999999999999999999999999
Q ss_pred CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC---------------------------------
Q 007018 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------- 335 (621)
Q Consensus 289 ~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v--------------------------------- 335 (621)
.|+++..+|+.+.+.++..+.+.|+.|. |+|||++|+||+||.--
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999995 99999999999999632
Q ss_pred -----CEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 336 -----~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
-+||-...+.|...=-|-.||+||.|.+|.+-.|++-+|
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 268888888888888999999999999999999998754
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=290.08 Aligned_cols=343 Identities=23% Similarity=0.296 Sum_probs=241.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
+.++......--..-.++++|.+.+..+| |+++++++|||+|||.++...|...+...+ ..++++++||+-|+.|.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHH
Confidence 33443333332344469999999999999 999999999999999999999998887643 46899999999999998
Q ss_pred HHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHH
Q 007018 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQ 188 (621)
Q Consensus 110 ~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~ 188 (621)
...+..++.. ..+....||.........+...++|+|+||..+..-|.+.....++.+.++||||||+..... |...
T Consensus 123 ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~V 200 (746)
T KOG0354|consen 123 IACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNI 200 (746)
T ss_pred HHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHH
Confidence 8666666544 566666777555555556677899999999999988877444447899999999999988544 4455
Q ss_pred HHHHHHhcccCCcEEEEEccCcHHHHHHHHhc------C---------------CCCceeeecc----------------
Q 007018 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAG------L---------------RDPHLVRLDV---------------- 231 (621)
Q Consensus 189 l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~------l---------------~~p~~i~~~~---------------- 231 (621)
+...+..-....|+|++|||+.+......... + ++-..+.++.
T Consensus 201 mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 201 MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIE 280 (746)
T ss_pred HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHH
Confidence 55666655556699999999976544433211 0 0000000000
Q ss_pred ----------------CC------------CCCCCc--eEE--EE---------------Ecc-----------------
Q 007018 232 ----------------DT------------KISPDL--KLA--FF---------------TLR----------------- 247 (621)
Q Consensus 232 ----------------~~------------~~~~~~--~~~--~~---------------~~~----------------- 247 (621)
.. ...++. .+. |. .++
T Consensus 281 p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~ 360 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVAL 360 (746)
T ss_pred HHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccch
Confidence 00 000000 000 00 000
Q ss_pred --------------------------------hhhHHHHHHHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHH---CC
Q 007018 248 --------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE---EG 290 (621)
Q Consensus 248 --------------------------------~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~---~g 290 (621)
...|...|...+.+.. .+..++|||+.++..|+.+...|.. .|
T Consensus 361 ~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 361 KKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred hHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 0001122222222111 2456899999999999999999983 24
Q ss_pred CCceeecC--------CCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCC
Q 007018 291 LEPSVCYG--------DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (621)
Q Consensus 291 ~~~~~l~g--------~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~ 362 (621)
+.+..+-| +|+|...+.++++|++|+++|||||+++++|||||.|++||-||.-.++-..+||.|| ||+ +
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ 518 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-R 518 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-c
Confidence 44444433 6999999999999999999999999999999999999999999999999999999999 997 6
Q ss_pred ccEEEEEeccccHHHHHH
Q 007018 363 TGTAFSFVTSEDMAYLLD 380 (621)
Q Consensus 363 ~G~~i~~v~~~e~~~l~~ 380 (621)
.|.++.+++..+...+..
T Consensus 519 ns~~vll~t~~~~~~~E~ 536 (746)
T KOG0354|consen 519 NSKCVLLTTGSEVIEFER 536 (746)
T ss_pred CCeEEEEEcchhHHHHHH
Confidence 788888888655544433
No 79
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=5.5e-31 Score=258.25 Aligned_cols=202 Identities=46% Similarity=0.819 Sum_probs=186.8
Q ss_pred ccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 25 f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
|+++++++.+.+.+.++||..|+++|+++++.++.|+++++.+|||+|||++|++|+++.+.......+.+++|++||++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999999999999999988753335789999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC
Q 007018 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (621)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g 184 (621)
|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.+.+++... ...+.+++++|+||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERG-KLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-CCChhhCCEEEEeChHHhhccC
Confidence 999999999999888899999999999887777777778999999999999988864 5778999999999999999999
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCcee
Q 007018 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (621)
Q Consensus 185 f~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (621)
+...+..++..++..+|++++|||+++.+..++..++.+|.++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999999999988765
No 80
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.98 E-value=2.7e-31 Score=296.74 Aligned_cols=411 Identities=23% Similarity=0.283 Sum_probs=303.1
Q ss_pred cCCCCCHHHHHHHHHCCCC----------------------CChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHHH
Q 007018 26 ESLNLSPNVFRAIKRKGYK----------------------VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 26 ~~l~L~~~l~~~l~~~g~~----------------------~ptpiQ~~aip~il~g----~dvv~~a~TGSGKT~afll 79 (621)
..++.+..+++.+.+.|+. .+.+-|+.++..|... ...++.|.||||||.+|+-
T Consensus 157 ~~~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~ 236 (730)
T COG1198 157 HAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLE 236 (730)
T ss_pred hhcchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHH
Confidence 3456777888888887763 4678999999999766 6799999999999999997
Q ss_pred HHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH-hhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhH
Q 007018 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHL 158 (621)
Q Consensus 80 p~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~-l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l 158 (621)
.+-+.|.. |..+|||+|.+.|..|+.+.++. |+....+-++.+..+..+..|.+...+...|+|||...++
T Consensus 237 ~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF--- 308 (730)
T COG1198 237 AIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF--- 308 (730)
T ss_pred HHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc---
Confidence 77777764 88999999999999998885544 5533344444444555566676777789999999999886
Q ss_pred hhcCCCCcCCcceEEEecccccc-----CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCC
Q 007018 159 SEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233 (621)
Q Consensus 159 ~~~~~~~l~~l~~vViDEah~l~-----~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~ 233 (621)
.+++++++||+||.|.-. .+.+..+-..++..-..++++||.||| ++++.+.+..-+.+..+.+....
T Consensus 309 -----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSAT--PSLES~~~~~~g~y~~~~L~~R~ 381 (730)
T COG1198 309 -----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSAT--PSLESYANAESGKYKLLRLTNRA 381 (730)
T ss_pred -----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCC--CCHHHHHhhhcCceEEEEccccc
Confidence 789999999999999865 345777778888887889999999999 67888888866666777776655
Q ss_pred CCCCCceEEEEEcchhh------HHHHHHHHHHHhccCCCcEEEEecChhh-----------------------------
Q 007018 234 KISPDLKLAFFTLRQEE------KHAALLYMIREHISSDQQTLIFVSTKHH----------------------------- 278 (621)
Q Consensus 234 ~~~~~~~~~~~~~~~~~------k~~~L~~~l~~~~~~~~k~IVF~~t~~~----------------------------- 278 (621)
.........++.++.+. -...|++.+++.+..++++|+|+|.+..
T Consensus 382 ~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~ 461 (730)
T COG1198 382 GRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATG 461 (730)
T ss_pred cccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCC
Confidence 53334455566665432 2368999999999999999999984321
Q ss_pred -------------------------------HHHHHHHHHHC--CCCceeecCCCCHH--HHHHHHHHHhcCCceEEEec
Q 007018 279 -------------------------------VEFLNVLFREE--GLEPSVCYGDMDQD--ARKIHVSRFRARKTMFLIVT 323 (621)
Q Consensus 279 -------------------------------ve~l~~~L~~~--g~~~~~l~g~l~~~--~R~~~l~~F~~g~~~ILV~T 323 (621)
.+++.+.|... +..+..+.++.... .-...+..|.+|+.+|||+|
T Consensus 462 ~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGT 541 (730)
T COG1198 462 QLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGT 541 (730)
T ss_pred eeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecc
Confidence 23666666654 34555566655443 33567999999999999999
Q ss_pred CcccccCCCCCCCEEEEcC---------CCC---ChhHHHHHhcccCCCCCccEEEEEecc-----------ccHHHHHH
Q 007018 324 DVAARGIDIPLLDNVINWD---------FPP---KPKIFVHRVGRAARAGRTGTAFSFVTS-----------EDMAYLLD 380 (621)
Q Consensus 324 dvaarGlDip~v~~VI~~d---------~P~---s~~~~~qrvGR~gR~G~~G~~i~~v~~-----------~e~~~l~~ 380 (621)
++++.|+|+|++++|...| +.. ....+.|..||+||++.+|.+++-... +|+..|+.
T Consensus 542 QmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~ 621 (730)
T COG1198 542 QMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYE 621 (730)
T ss_pred hhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHH
Confidence 9999999999999976433 222 233468999999999999988655432 35666777
Q ss_pred HHHHhCCCCcCCCCHH------------HHHhhhhhHHHHHHHHHhcCCccccccchhHHHHhhHHHHHHHHhhHhhHHH
Q 007018 381 LHLFLSKPIRAAPSEE------------EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448 (621)
Q Consensus 381 l~~~l~~~~~~~p~~~------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (621)
-++..++...+||... .+......+...++.....+..++|+.|..+.+..+.+..+++-....-..|
T Consensus 622 ~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~~~L 701 (730)
T COG1198 622 QELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADL 701 (730)
T ss_pred HHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcHHHH
Confidence 7888888888888433 2323333333333334444568999999999999888877777655444445
Q ss_pred HHH
Q 007018 449 QRT 451 (621)
Q Consensus 449 ~~~ 451 (621)
.+.
T Consensus 702 ~~~ 704 (730)
T COG1198 702 QKL 704 (730)
T ss_pred HHH
Confidence 554
No 81
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.98 E-value=1.9e-29 Score=283.54 Aligned_cols=148 Identities=20% Similarity=0.364 Sum_probs=132.1
Q ss_pred cCCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEE
Q 007018 26 ESLNLSPNVFRAIK-----RKGYKVP---TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (621)
Q Consensus 26 ~~l~L~~~l~~~l~-----~~g~~~p---tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~L 97 (621)
+.+++...+.+.+. .+||..| ||+|.++||.++.++++++.++||+|||++|++|++..+.. +..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCeE
Confidence 56789999999988 6899999 99999999999999999999999999999999999988764 23489
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcCCCCcC-------Cc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSLK-------SV 169 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~~~~l~-------~l 169 (621)
||+||++||.|+.+++..+.+++++++.+++||.+...+...+ .++|+|||||+| ++++.. +.+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999998887655 599999999999 999986 335554 45
Q ss_pred ceEEEecccccc
Q 007018 170 EYVVFDEADCLF 181 (621)
Q Consensus 170 ~~vViDEah~l~ 181 (621)
.++||||||.++
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 899999999987
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.5e-29 Score=292.44 Aligned_cols=319 Identities=21% Similarity=0.245 Sum_probs=212.0
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHH-HhhccCC
Q 007018 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTD 121 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~-~l~~~~~ 121 (621)
.|.|+|..++..++.. ..+++...+|.|||.-+.+.+-+.+... ...++|||||+ .|..||...+. +| +
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~kF----~ 223 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRRF----N 223 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHHh----C
Confidence 5999999998877654 4799999999999998876666555442 24579999998 78899877664 34 3
Q ss_pred CeEEEEEcCCChHHHHH---HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhc-
Q 007018 122 LRISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL- 196 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~---~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l- 196 (621)
+...++.+ ........ ......+++|+|.+.+...-.....+.-..+++||+||||++-... -.......+..+
T Consensus 224 l~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 224 LRFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred CCeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 54444433 22221100 0112467999999877642211112334578999999999986311 111112233333
Q ss_pred ccCCcEEEEEccCcH-H------------------HHHHHH-------------hcCC-CC-------------------
Q 007018 197 SENRQTLLFSATLPS-A------------------LAEFAK-------------AGLR-DP------------------- 224 (621)
Q Consensus 197 ~~~~q~ll~SATl~~-~------------------l~~~~~-------------~~l~-~p------------------- 224 (621)
.....++++||||-. . ...|.. ..+. ++
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 234578999999721 0 011110 0000 00
Q ss_pred --------------------------------ceeeecc-CCCCCCCceEEEEEc-------------------------
Q 007018 225 --------------------------------HLVRLDV-DTKISPDLKLAFFTL------------------------- 246 (621)
Q Consensus 225 --------------------------------~~i~~~~-~~~~~~~~~~~~~~~------------------------- 246 (621)
.+++-.. .....+.....-+.+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 0000000 000000000111101
Q ss_pred -------------chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHH-HCCCCceeecCCCCHHHHHHHHHHH
Q 007018 247 -------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHVSRF 312 (621)
Q Consensus 247 -------------~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~-~~g~~~~~l~g~l~~~~R~~~l~~F 312 (621)
..+.|...|..+++.. .+.++||||+++..+..+...|+ ..|+.+..+||+|++.+|..+++.|
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 0112444566666554 36799999999999999999994 6799999999999999999999999
Q ss_pred hcC--CceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 313 RAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 313 ~~g--~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
+++ ...|||||+++++|+|++.+++|||||+|++|..|+||+||++|.|++|.+.+++...+
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCC
Confidence 985 59999999999999999999999999999999999999999999999998877765543
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=8.3e-30 Score=299.20 Aligned_cols=315 Identities=19% Similarity=0.258 Sum_probs=221.1
Q ss_pred CCCCCChHHHH---HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHh
Q 007018 41 KGYKVPTPIQR---KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKEL 116 (621)
Q Consensus 41 ~g~~~ptpiQ~---~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l 116 (621)
..|...-|+.. +.+..+..++.++++|+||||||. .+|.+..-. .......+++.-|.|.-|..++. +.+++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 45665566655 445555566778899999999999 456442211 11112356677898888877765 33445
Q ss_pred hccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc-cccCCChHHH-HHHHHH
Q 007018 117 GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILG 194 (621)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah-~l~~~gf~~~-l~~il~ 194 (621)
+...|-.++.-+. .+.+ ...++.|+++|+|.|++.+.. .-.+.++++||||||| +.++.+|.-. +..++.
T Consensus 136 g~~lG~~VGY~vR---~~~~---~s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 GTPLGEKVGYKVR---FHDQ---VSSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred CCCcceEEeeEEc---CCcc---cCCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 4333333332222 2222 245788999999999999876 3458999999999999 6888887654 566655
Q ss_pred hcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch------hhHHHHHHHHHHHhcc-CCC
Q 007018 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHIS-SDQ 267 (621)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~------~~k~~~L~~~l~~~~~-~~~ 267 (621)
.. +..++|+||||++. ..|++.+...| .+.+.... . .+...|..+.. .++...+...+..... ..+
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~--~-PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~G 280 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT--Y-PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPG 280 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc--c-cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCC
Confidence 44 47899999999974 45666655445 44444321 1 23444443321 1234445555544332 457
Q ss_pred cEEEEecChhhHHHHHHHHHHCCC---CceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCC
Q 007018 268 QTLIFVSTKHHVEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (621)
Q Consensus 268 k~IVF~~t~~~ve~l~~~L~~~g~---~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P 344 (621)
.+|||++++.+++.+++.|...+. .+..+||+|++.+|..++..+ +..+|||||+++++|||||+|++||+++++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 899999999999999999998654 477899999999999886543 246899999999999999999999999854
Q ss_pred ------------------CChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 345 ------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 345 ------------------~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
.|...|.||+||+||.| +|.||.+++.+++..
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 35578999999999997 999999999876543
No 84
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3e-28 Score=274.48 Aligned_cols=319 Identities=21% Similarity=0.270 Sum_probs=241.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHH-HHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l-~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~ 119 (621)
.|.. |+++|--..=.+..| -++.+.||+|||+++.+|++ ..|. |..+-|++||.+||.|.++++..+..+
T Consensus 78 lg~~-~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCC-CCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4664 899998877666666 49999999999999999996 5543 445779999999999999999999999
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcCC-----CCcCCcceEEEecccccc-C----------
Q 007018 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED-----MSLKSVEYVVFDEADCLF-G---------- 182 (621)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~~-----~~l~~l~~vViDEah~l~-~---------- 182 (621)
.|+++++++||.+..++.... .++|+++||++| ++++...-. ..+..+.++||||||.++ +
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999998888766554 499999999999 998875321 236789999999999886 1
Q ss_pred -----CChHHHHHHHHHhcccC--------C-------------------------------------------------
Q 007018 183 -----MGFAEQLHKILGQLSEN--------R------------------------------------------------- 200 (621)
Q Consensus 183 -----~gf~~~l~~il~~l~~~--------~------------------------------------------------- 200 (621)
......+..+...+... .
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 01222333333333110 1
Q ss_pred ------------------------------------------------------------cEEEEEccCcHHHHHHHHhc
Q 007018 201 ------------------------------------------------------------QTLLFSATLPSALAEFAKAG 220 (621)
Q Consensus 201 ------------------------------------------------------------q~ll~SATl~~~l~~~~~~~ 220 (621)
.+.+||+|......+|...+
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 23344444444434443333
Q ss_pred CCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCC
Q 007018 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (621)
Q Consensus 221 l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (621)
-- .++.+....+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 387 ~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NL--DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CC--CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 21 112221111111000011233345678999999998876788999999999999999999999999999999995
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC--------------------------------------CEEEEcC
Q 007018 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------------DNVINWD 342 (621)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v--------------------------------------~~VI~~d 342 (621)
+.+|+..+..|+.+...|+|||++|+||+||+-- -+||...
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999853 2788888
Q ss_pred CCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 343 ~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
.|.|...--|-.||+||.|.+|.+-.|++-+|
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 99999999999999999999999999998754
No 85
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=3.4e-29 Score=287.77 Aligned_cols=312 Identities=19% Similarity=0.231 Sum_probs=209.5
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc--CC
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TD 121 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~--~~ 121 (621)
..|+|+|+.+........-+++.||||+|||.+.+.++...+... ...+++|..||++++.|+++.+.++.+. ..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---LADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 369999998865544456689999999999999887766433321 2457999999999999999988764332 13
Q ss_pred CeEEEEEcCCChHHHHH--------------------HH-h---C---CCCEEEECchHHHHhHhhcCCCCcCCc----c
Q 007018 122 LRISLLVGGDSMESQFE--------------------EL-A---Q---NPDIIIATPGRLMHHLSEVEDMSLKSV----E 170 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~--------------------~l-~---~---~~~IiV~Tpgrl~~~l~~~~~~~l~~l----~ 170 (621)
..+.+.+|.......+. .+ . + -.+|+|||...++......+...+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 46677777654322111 11 1 1 268999999988854433222223333 4
Q ss_pred eEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHHH-HHhcCCC-C-------ceeeecc---------
Q 007018 171 YVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEF-AKAGLRD-P-------HLVRLDV--------- 231 (621)
Q Consensus 171 ~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~-~~~~l~~-p-------~~i~~~~--------- 231 (621)
+|||||+|-+ +......+..++..+ .....+|++|||+|..+.+. ..++-.. + ..+....
T Consensus 442 vvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 8999999986 333344555555544 23567999999999887653 3332111 0 0111000
Q ss_pred CCC---CCCCceEEEEEc--chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC---CCceeecCCCCHH
Q 007018 232 DTK---ISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---LEPSVCYGDMDQD 303 (621)
Q Consensus 232 ~~~---~~~~~~~~~~~~--~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g---~~~~~l~g~l~~~ 303 (621)
... ........+... ........++..+.+....+++++|||||++.++.+++.|++.+ ..+..+||.+.+.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 000 000011111111 11112234555555555678899999999999999999999765 5789999999999
Q ss_pred HH----HHHHHHH-hcCC---ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCC
Q 007018 304 AR----KIHVSRF-RARK---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (621)
Q Consensus 304 ~R----~~~l~~F-~~g~---~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~ 362 (621)
+| +.+++.| ++|+ ..|||+|+++++||||+ +|++|....| .+.++||+||++|.++
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 88 4568888 5665 47999999999999995 7999998777 6899999999999876
No 86
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=1.3e-28 Score=267.01 Aligned_cols=334 Identities=19% Similarity=0.244 Sum_probs=257.4
Q ss_pred cCCCCCccCCCCCHHHHHH-HHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCC
Q 007018 19 KSKSGGFESLNLSPNVFRA-IKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ 91 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~-l~~~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~ 91 (621)
+++..+.-.+..+..+++. +....|. ||.-|++++..|... .+-+++|..|||||+++++.|+..+..
T Consensus 236 ~~~~~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---- 310 (677)
T COG1200 236 KRQKRSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---- 310 (677)
T ss_pred HHhhccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc----
Confidence 3444444455566665555 4668996 999999999999864 357899999999999999999988764
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH---HHH-hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EEL-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~---~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
|.++..++||--||.|.++.+.++....++++..++|........ +.+ .+..+|+|||..-+. ....++
T Consensus 311 -G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ------d~V~F~ 383 (677)
T COG1200 311 -GYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ------DKVEFH 383 (677)
T ss_pred -CCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh------cceeec
Confidence 889999999999999999999999988999999999987655433 334 346999999965433 367799
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhccc-CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEc
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 246 (621)
++.+||+||-|| |.-.-...+..... .+-+++||||+-|. .++-....+-..-.++.-......+....+
T Consensus 384 ~LgLVIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~GRkpI~T~~i-- 454 (677)
T COG1200 384 NLGLVIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPPGRKPITTVVI-- 454 (677)
T ss_pred ceeEEEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCCCCCceEEEEe--
Confidence 999999999999 55555555666666 68899999997443 333333444333333332222222332222
Q ss_pred chhhHHHHHHHHHHHhccCCCcEEEEecChhh--------HHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCC
Q 007018 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHH--------VEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARK 316 (621)
Q Consensus 247 ~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~--------ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~ 316 (621)
..++...+++.+++.+..+.|+.|.|+-.+. ++.+++.|+.. ++.+..+||.|+.++...++.+|++|+
T Consensus 455 -~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e 533 (677)
T COG1200 455 -PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE 533 (677)
T ss_pred -ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC
Confidence 3356677788888888899999999986544 55666777643 566899999999999999999999999
Q ss_pred ceEEEecCcccccCCCCCCCEEEEcCCC-CChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 317 TMFLIVTDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 317 ~~ILV~TdvaarGlDip~v~~VI~~d~P-~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
++|||||.|++.|+|+|+.+++|.++.- ....+.-|--||+||.+..+.|++++.+..
T Consensus 534 ~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 534 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred CcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999998887753 456777899999999999999999998865
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.8e-29 Score=289.10 Aligned_cols=329 Identities=21% Similarity=0.289 Sum_probs=256.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 36 RAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 36 ~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
......|+...+|-|.++|..++.|+|+++..|||.||++||.+|++-. +.-.|||+|...|...+...+.
T Consensus 255 ~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L~- 325 (941)
T KOG0351|consen 255 LLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHLS- 325 (941)
T ss_pred HHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhhh-
Confidence 3344579999999999999999999999999999999999999997733 3368999999999877544442
Q ss_pred hhccCCCeEEEEEcCCChHHHHH---HHh-C--CCCEEEECchHHHHhHhhc-CCCCcCC---cceEEEeccccccCCC-
Q 007018 116 LGRYTDLRISLLVGGDSMESQFE---ELA-Q--NPDIIIATPGRLMHHLSEV-EDMSLKS---VEYVVFDEADCLFGMG- 184 (621)
Q Consensus 116 l~~~~~l~~~~~~gg~~~~~~~~---~l~-~--~~~IiV~Tpgrl~~~l~~~-~~~~l~~---l~~vViDEah~l~~~g- 184 (621)
..++....+.++....++.. .+. + ..+|+..||+.+...-.-. ....+.. +.++||||||.+..||
T Consensus 326 ---~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 326 ---KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred ---hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 34688888988888764433 332 3 4689999999876422110 1123444 7899999999999887
Q ss_pred -hHH---HHHHHHHhcccCCcEEEEEccCcHHHHHHHHh--cCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHH
Q 007018 185 -FAE---QLHKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (621)
Q Consensus 185 -f~~---~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (621)
|.. .+..+....+. ..++.+|||.+..+.+-+-. .+.+|.++ ......+++...+..-........++..
T Consensus 403 dFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~---~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELF---KSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred cccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCccee---cccCCCCCceEEEEeccCccchHHHHHH
Confidence 444 34444455554 78999999998888775544 45566643 2333445555444332222333334444
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
++.. .....+||||.++..++.++..|+..|+.+..+|++|+..+|..+...|..++++|++||=+.++|||-|+|+.|
T Consensus 479 ~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 479 SKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred hhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 4443 367789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
|+|.+|.+.+.|.|-+||+||.|....|++|+..+|...+..+
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 9999999999999999999999999999999999988766554
No 88
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.8e-28 Score=275.21 Aligned_cols=320 Identities=20% Similarity=0.249 Sum_probs=232.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|++.|--+.=.+..|+ ++...||+|||++..+|++-.... |..+-|++||--||.|-++++..+..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 465 49999988876666665 999999999999999998877654 7789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-C----------C
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~----------~ 183 (621)
|++++++.|+.+..+.... -.+||+.+|...| +++|... ...-...+.+.||||+|.++ + +
T Consensus 149 Gl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 9999999987666554333 3689999999766 3344321 11224567899999999775 1 0
Q ss_pred -----ChHHHHHHHHHhcccC--------------------C--------------------------------------
Q 007018 184 -----GFAEQLHKILGQLSEN--------------------R-------------------------------------- 200 (621)
Q Consensus 184 -----gf~~~l~~il~~l~~~--------------------~-------------------------------------- 200 (621)
.+...+..+...+... +
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0112222222222110 0
Q ss_pred ----------------------------------------------------------------------cEEEEEccCc
Q 007018 201 ----------------------------------------------------------------------QTLLFSATLP 210 (621)
Q Consensus 201 ----------------------------------------------------------------------q~ll~SATl~ 210 (621)
.+.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 1223333333
Q ss_pred HHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC
Q 007018 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (621)
Q Consensus 211 ~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g 290 (621)
..-.+|...+-- .++.+....+....-....+......|..++...+......+.++||||+|+..++.++..|.+.|
T Consensus 387 ~e~~Ef~~iY~l--~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 387 TEEEEFREIYNM--EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHHhCC--CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 333333222211 111111111100000011223344678889999998777789999999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC---CCC-----EEEEcCCCCChhHHHHHhcccCCCCC
Q 007018 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGR 362 (621)
Q Consensus 291 ~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip---~v~-----~VI~~d~P~s~~~~~qrvGR~gR~G~ 362 (621)
+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.+...|.|+.||+||+|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888877777777 999999999999995 788 99999999999999999999999999
Q ss_pred ccEEEEEecccc
Q 007018 363 TGTAFSFVTSED 374 (621)
Q Consensus 363 ~G~~i~~v~~~e 374 (621)
+|.+..|++.+|
T Consensus 543 ~G~s~~~~sleD 554 (796)
T PRK12906 543 PGSSRFYLSLED 554 (796)
T ss_pred CcceEEEEeccc
Confidence 999999999864
No 89
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=4.1e-29 Score=253.62 Aligned_cols=328 Identities=19% Similarity=0.259 Sum_probs=246.4
Q ss_pred HHHHHHHH-CCCCC-ChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 33 NVFRAIKR-KGYKV-PTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 33 ~l~~~l~~-~g~~~-ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
.+-.+|++ .|+.. -+|.|.+|+..+..+ +||.++.|||+||++||.+|.+-. .| -.||++|..+|....
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~g-ITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GG-ITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CC-eEEEehHHHHHHHHH
Confidence 34556665 46654 589999999988765 799999999999999999998744 24 689999999999988
Q ss_pred HHHHHHhhccCCCeEEEEEcCCChHHHHHHH------hCCCCEEEECchH-----HHHhHhhcCCCCcCCcceEEEeccc
Q 007018 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGR-----LMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 110 ~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l------~~~~~IiV~Tpgr-----l~~~l~~~~~~~l~~l~~vViDEah 178 (621)
.+-+.++- +++..+.+.-+..+..+.+ ..+..++.-||+. |..+|+. ..+-+.+.|+|+||||
T Consensus 78 iDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 78 IDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAH 151 (641)
T ss_pred HHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhh
Confidence 88777764 5555555544444333222 2356789999974 3334432 1234557899999999
Q ss_pred cccCCC--hHHHH---HHHHHhcccCCcEEEEEccCcHHHHHHHH--hcCCCCceeeeccCCCCCCCceEEEEEcch---
Q 007018 179 CLFGMG--FAEQL---HKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQ--- 248 (621)
Q Consensus 179 ~l~~~g--f~~~l---~~il~~l~~~~q~ll~SATl~~~l~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~--- 248 (621)
.+..|| |..+. -++...+ .....+.++||.++.+.+-+. .-|++|+-+--... -....|+.+.-
T Consensus 152 CVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-----FR~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 152 CVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-----FRDNLFYDNHMKSF 225 (641)
T ss_pred hHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-----hhhhhhHHHHHHHH
Confidence 999887 44433 3333444 366789999999998887544 34567765422111 11112222211
Q ss_pred -hhHHHHHHHHHHHhccC-----------CCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 007018 249 -EEKHAALLYMIREHISS-----------DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (621)
Q Consensus 249 -~~k~~~L~~~l~~~~~~-----------~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~ 316 (621)
.+-...|.++....+.. .+=.||||.|++.||.++..|...|+.+...|.+|...+|..+.++|.+++
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 23345555555554431 233699999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHH
Q 007018 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (621)
Q Consensus 317 ~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~ 380 (621)
+.|+++|...++|+|-|+|+.||++++|.+..-|.|-.||+||.|.+.+|-++++.+|...+..
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~F 369 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNF 369 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765543
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.9e-28 Score=266.81 Aligned_cols=290 Identities=23% Similarity=0.284 Sum_probs=203.9
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+|+|++++..+.. ++..++.+|||+|||.+++..+... +..+||||||++|+.||.+.+..+.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~--- 104 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFL--- 104 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhc---
Confidence 599999999999998 8999999999999999887554433 2239999999999999986555543
Q ss_pred CCe-EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccC
Q 007018 121 DLR-ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (621)
Q Consensus 121 ~l~-~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~ 199 (621)
+.. .....||..... .. ..|.|+|...+..... ...+..+.+++|||||||++....|..-...+ ...
T Consensus 105 ~~~~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~----~~~ 173 (442)
T COG1061 105 LLNDEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILELL----SAA 173 (442)
T ss_pred CCccccceecCceecc-----CC-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHHhh----hcc
Confidence 222 223333332111 11 4699999999886421 12344558999999999998776544443333 222
Q ss_pred CcEEEEEccCcHHHHH---HHHhcCCCCceeeeccCCCCC----CCceEEEEEc--------------------------
Q 007018 200 RQTLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKIS----PDLKLAFFTL-------------------------- 246 (621)
Q Consensus 200 ~q~ll~SATl~~~l~~---~~~~~l~~p~~i~~~~~~~~~----~~~~~~~~~~-------------------------- 246 (621)
...+++|||++..-.. .....+ .|..+.......+. .......+.+
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 2289999998643211 111111 13333332111110 0111111111
Q ss_pred ------------chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc
Q 007018 247 ------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (621)
Q Consensus 247 ------------~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (621)
....+...+..++..+. .+.+++||+++..+++.++..+...++ +..+.|..++.+|..+++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 01112223333333333 577999999999999999999998888 8899999999999999999999
Q ss_pred CCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCC
Q 007018 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR 359 (621)
Q Consensus 315 g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR 359 (621)
|++++||++.++..|+|+|+++++|......|+..|+||+||.-|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.5e-27 Score=264.80 Aligned_cols=333 Identities=20% Similarity=0.263 Sum_probs=243.3
Q ss_pred CCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhhC-----CCCCeEEEEEcchHHHHHHHHHHHH
Q 007018 41 KGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTLKFTK 114 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllp~l~~L~~~~-----~~~g~~~LIL~PtreLa~Q~~~~~~ 114 (621)
.+|..+..+|..++|.+.. ..+++++||||||||..|++.++..+..+. ...+.++++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5788899999999999875 578999999999999999999999988532 2357899999999999999988554
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC---CCcCCcceEEEeccccccCCChHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~---~~l~~l~~vViDEah~l~~~gf~~~l~~ 191 (621)
+-....|+.+..++|........ -..++|+|+||+.+- .+.+... --+..+.+|||||.|.+-+. .++.+..
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 43346689999999987655432 346999999999863 3333111 22677899999999998865 3455555
Q ss_pred HHHhc-------ccCCcEEEEEccCcHHHHHHHHhcCCCC--ceeeeccCCCCCCCceEEEEEcchh---h----HHHHH
Q 007018 192 ILGQL-------SENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQE---E----KHAAL 255 (621)
Q Consensus 192 il~~l-------~~~~q~ll~SATl~~~l~~~~~~~l~~p--~~i~~~~~~~~~~~~~~~~~~~~~~---~----k~~~L 255 (621)
|+.++ ....+++.+|||+|+- .+.+...-.+| .+..++......+ +.+.++..+.. . -....
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvp-L~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVP-LTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccc-eeeeEEeeecccchhhhhhHHHHH
Confidence 55543 3567899999999864 33443322232 3444554444333 55555554433 1 12233
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC----C-------------------CCceeecCCCCHHHHHHHHHHH
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----G-------------------LEPSVCYGDMDQDARKIHVSRF 312 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g-------------------~~~~~l~g~l~~~~R~~~l~~F 312 (621)
..-+.+.+..+.+++|||.++...-..++.|.+. | ....+.|.+|...+|..+...|
T Consensus 339 ~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F 418 (1230)
T KOG0952|consen 339 YDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEF 418 (1230)
T ss_pred HHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHH
Confidence 4445556678999999999998888888777652 1 2245788999999999999999
Q ss_pred hcCCceEEEecCcccccCCCCCCCEEEEcCCC-----------CChhHHHHHhcccCCC--CCccEEEEEeccccHHHHH
Q 007018 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFP-----------PKPKIFVHRVGRAARA--GRTGTAFSFVTSEDMAYLL 379 (621)
Q Consensus 313 ~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P-----------~s~~~~~qrvGR~gR~--G~~G~~i~~v~~~e~~~l~ 379 (621)
..|.++||+||..+|.|+|+|. .+||.-+.+ -..-+.+|..|||||- +..|.++++-+.+-+.+..
T Consensus 419 ~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 419 KEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred hcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999997 455543332 1345679999999995 5569998888877666544
Q ss_pred HH
Q 007018 380 DL 381 (621)
Q Consensus 380 ~l 381 (621)
.+
T Consensus 498 sL 499 (1230)
T KOG0952|consen 498 SL 499 (1230)
T ss_pred HH
Confidence 43
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-26 Score=264.33 Aligned_cols=323 Identities=22% Similarity=0.220 Sum_probs=257.3
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 29 ~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+.+....... .+|. -||-|..||..+.+. -|=++||..|-|||.+++-+++.... .|++|.||||
T Consensus 578 ~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----~GKQVAvLVP 651 (1139)
T COG1197 578 PPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM-----DGKQVAVLVP 651 (1139)
T ss_pred CCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc-----CCCeEEEEcc
Confidence 345555555444 6885 999999999999753 48999999999999999988887765 4889999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
|--||.|-++.+++--....+++..+.-=.+..++...+ .+..||||||.- +|. ++..+++++++||||.
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~--kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLS--KDVKFKDLGLLIIDEE 725 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhC--CCcEEecCCeEEEech
Confidence 999999999977776667788888887666655554433 357899999953 232 4788999999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHH
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
|| |+-.-.+-++.+..+.-++-+|||+-|..-.++-.++++-.+|......+.+ +.+.-.+.....+.+
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p------V~T~V~~~d~~~ire 794 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP------VKTFVSEYDDLLIRE 794 (1139)
T ss_pred hh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc------eEEEEecCChHHHHH
Confidence 99 6666677777778888999999999777778888999988777554333221 212112222344555
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
.+...+..++|+-...|..+..+.++..|+.. ...+.+.||.|+..+-+.++..|.+|+.+|||||-+++.|||||++
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnA 874 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNA 874 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCC
Confidence 55555668999999999999999999999886 4457889999999999999999999999999999999999999999
Q ss_pred CEEEEcCCC-CChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 336 DNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 336 ~~VI~~d~P-~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
+.+|..+-- ....+..|--||+||..+.|.||.++.++.
T Consensus 875 NTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 875 NTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred ceEEEeccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 998855432 456888999999999999999999998753
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.7e-26 Score=256.98 Aligned_cols=320 Identities=20% Similarity=0.231 Sum_probs=231.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--.-=.+ .+.-++.++||.|||++|.+|++..... |..+.||+|+++||.|..+++..+..+.
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 355 3788887554444 3456999999999999999999877653 5569999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcCCCC-----cCCcceEEEeccccccCC-----------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMS-----LKSVEYVVFDEADCLFGM----------- 183 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~~~~-----l~~l~~vViDEah~l~~~----------- 183 (621)
|+++.++.+|.+..+... .-+++|+++||++| +++|...=.+. ...+.++||||+|.++-.
T Consensus 151 Glsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 999999999887644322 23789999999999 88887631222 377889999999987611
Q ss_pred -----ChHHHHHHHHHhcc-------------------cCCcEE------------------------------------
Q 007018 184 -----GFAEQLHKILGQLS-------------------ENRQTL------------------------------------ 203 (621)
Q Consensus 184 -----gf~~~l~~il~~l~-------------------~~~q~l------------------------------------ 203 (621)
.+...+..++..+. ...+.+
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 11222222222221 011112
Q ss_pred --------------------------------------------------------------------------------
Q 007018 204 -------------------------------------------------------------------------------- 203 (621)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (621)
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence
Q ss_pred EEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHH
Q 007018 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (621)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~ 283 (621)
+||+|....-.+|...+--+ ++.+....+....-....+.....+|..+++..+.+....+.++||||.|+..++.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred cccCCChHHHHHHHHHhCCC--EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 22222222222222221110 1111110000000000112233467888999989888889999999999999999999
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCC-----------------------------
Q 007018 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL----------------------------- 334 (621)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~----------------------------- 334 (621)
..|...|+++..+|+.+++.++..+.+.|+.|. |+|||++|+||+||.-
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 9999999999999973
Q ss_pred --------CCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 335 --------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 335 --------v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
--+||-...+.|...=-|-.||+||.|.+|.+-.|++-+|
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 2378888899999999999999999999999999998755
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=5.9e-27 Score=234.55 Aligned_cols=339 Identities=18% Similarity=0.255 Sum_probs=257.1
Q ss_pred cCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 26 ESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 26 ~~l~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
+++++|....+.|+. ......+|.|..+|...+.|+|+++..|||.||++||.+|++.. ...+||+||...
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechhHH
Confidence 456788887777765 46678999999999999999999999999999999999998754 335999999999
Q ss_pred HHHHHHHHHHHhhccCCCeEEEEEcCCChHHH--HH-HH---hCCCCEEEECchHHHHhHhhc----CCCCcCCcceEEE
Q 007018 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQ--FE-EL---AQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVF 174 (621)
Q Consensus 105 La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~--~~-~l---~~~~~IiV~Tpgrl~~~l~~~----~~~~l~~l~~vVi 174 (621)
|.....-+++.++ +....+....+.++. .. .+ .....++..||+.+..--..| +.+....+.+|-+
T Consensus 146 lmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 146 LMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 9998888888876 555555554444332 11 12 124578999999874322111 2456778899999
Q ss_pred eccccccCCC--hHHH--HHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch--
Q 007018 175 DEADCLFGMG--FAEQ--LHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-- 248 (621)
Q Consensus 175 DEah~l~~~g--f~~~--l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-- 248 (621)
||.|....|| |... ...|+.+--++..++.++||.+..+.+-++..+.-...+.+.. .-..+++...+..-+.
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQKPGNE 300 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeCCCCh
Confidence 9999999877 3333 3345666556888999999998887776665543222222222 1223444433333222
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
++-...+..+++... .+...||||-+.+.++.++..|+..|+.....|..|.+.++.-.-+.|..|++.|+|+|-..+.
T Consensus 301 dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred HHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 233344444444332 4667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHH-------------------------------------------HhcccCCCCCccE
Q 007018 329 GIDIPLLDNVINWDFPPKPKIFVH-------------------------------------------RVGRAARAGRTGT 365 (621)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~~~q-------------------------------------------rvGR~gR~G~~G~ 365 (621)
|||-|+|+.||+..+|.+.+.|.| -.||+||.+.+..
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 6799999999999
Q ss_pred EEEEeccccHHHH
Q 007018 366 AFSFVTSEDMAYL 378 (621)
Q Consensus 366 ~i~~v~~~e~~~l 378 (621)
|++++.-.|+...
T Consensus 460 cilyy~~~difk~ 472 (695)
T KOG0353|consen 460 CILYYGFADIFKI 472 (695)
T ss_pred EEEEechHHHHhH
Confidence 9999987776443
No 95
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=3.2e-25 Score=261.84 Aligned_cols=308 Identities=18% Similarity=0.267 Sum_probs=196.5
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc
Q 007018 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~ 119 (621)
.|+|+|.+||..+.. | +.++++++||||||.+++. ++.+|.... ...++|||+|+++|+.|+.+.++.++-.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~--~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAK--RFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcC--ccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 599999999988762 3 6799999999999988543 444554321 3468999999999999999988876422
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc----CCCCcCCcceEEEeccccccC----C-----C--
Q 007018 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFG----M-----G-- 184 (621)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~----~~~~l~~l~~vViDEah~l~~----~-----g-- 184 (621)
.......+++....... ....+..|+|+|...+...+... ..+.+..+++||+||||+... + +
T Consensus 490 ~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 22122122221111111 11345789999999987664321 124577889999999999631 1 1
Q ss_pred ----hHHHHHHHHHhcccCCcEEEEEccCcHHHHHHH-------------Hhc-CCC---Cceeeecc--C-CCCCCC--
Q 007018 185 ----FAEQLHKILGQLSENRQTLLFSATLPSALAEFA-------------KAG-LRD---PHLVRLDV--D-TKISPD-- 238 (621)
Q Consensus 185 ----f~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~-------------~~~-l~~---p~~i~~~~--~-~~~~~~-- 238 (621)
+...+..++.... ...|+|||||......+. ..+ +.+ |..+.... . ......
T Consensus 568 ~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~ 645 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEE 645 (1123)
T ss_pred hhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccch
Confidence 2356677777553 567999999854322211 111 110 11111100 0 000000
Q ss_pred c--------eEEEEEcchh---------------hHHHHHHHHHHHhcc--CCCcEEEEecChhhHHHHHHHHHHC----
Q 007018 239 L--------KLAFFTLRQE---------------EKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE---- 289 (621)
Q Consensus 239 ~--------~~~~~~~~~~---------------~k~~~L~~~l~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~---- 289 (621)
+ .........+ .....++..+.+.+. .++++||||.++.|++.+...|...
T Consensus 646 ~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~ 725 (1123)
T PRK11448 646 VEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKK 725 (1123)
T ss_pred hhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 0 0000000000 001111121222221 2479999999999999999887753
Q ss_pred --CC---CceeecCCCCHHHHHHHHHHHhcCCc-eEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCC
Q 007018 290 --GL---EPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (621)
Q Consensus 290 --g~---~~~~l~g~l~~~~R~~~l~~F~~g~~-~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G 361 (621)
++ .+..++|+.+ .+..++++|+++.. .|+|++|++++|+|+|.|.+||+++++.|...|+|++||+.|..
T Consensus 726 ~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 726 YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 3456888875 45678999999886 69999999999999999999999999999999999999999964
No 96
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.9e-25 Score=211.98 Aligned_cols=165 Identities=38% Similarity=0.593 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEE
Q 007018 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (621)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~ 126 (621)
||+|.++++.+..|+++++.||||+|||+++++|++..+... ...+++|++|+++|+.|+.+.+..+....++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 23489999999999999999999998888899999
Q ss_pred EEcCCChH-HHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhccc--CCcEE
Q 007018 127 LVGGDSME-SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTL 203 (621)
Q Consensus 127 ~~gg~~~~-~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~--~~q~l 203 (621)
++|+.... .+...+..+++|+|+||++|.+.+... ...+.++++|||||+|.+...++...+..++..+.. +.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 99998866 444445678999999999999999873 346777999999999999998888999999888743 58999
Q ss_pred EEEccCcHHHHH
Q 007018 204 LFSATLPSALAE 215 (621)
Q Consensus 204 l~SATl~~~l~~ 215 (621)
++|||+++.+..
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966654
No 97
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=9.5e-25 Score=244.98 Aligned_cols=341 Identities=21% Similarity=0.305 Sum_probs=249.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCC------CCCeEEEEEcch
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPT 102 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~------~~g~~~LIL~Pt 102 (621)
++.+-..+. .|+.++.++|.+..+..+.+ .++++|||||+|||..+++-|++.+..+.. ....++++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444445554 37778999999999999987 579999999999999999999999987765 234589999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC-C-CCcCCcceEEEeccccc
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-D-MSLKSVEYVVFDEADCL 180 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~-~-~~l~~l~~vViDEah~l 180 (621)
.+|+..+...+.+-....|+.+.-++|......+. -.+..|+|+||+.. +.+.+.. + -..+-+.++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999988866666668899999999986654321 24589999999976 3444321 1 12345788999999988
Q ss_pred cCCChHHHHHHHHHhc-------ccCCcEEEEEccCcHHH--HHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-
Q 007018 181 FGMGFAEQLHKILGQL-------SENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE- 250 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l-------~~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~- 250 (621)
-+. .+..+..|..+. ..+++.+++|||+|+-. ..|.... .+.++..+...+..| +.+.|+.+....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~--~~glf~fd~syRpvP-L~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVD--PEGLFYFDSSYRPVP-LKQQYIGITEKKP 525 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccC--cccccccCcccCcCC-ccceEeccccCCc
Confidence 553 245555444433 34788999999999743 3333322 345666666655554 667776664332
Q ss_pred -H-H----HHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH------------------------------------
Q 007018 251 -K-H----AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------ 288 (621)
Q Consensus 251 -k-~----~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~------------------------------------ 288 (621)
+ . .+..+-+-++..+ +|+|||+-+++..-..+..++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 2 1 2334444455544 8999999998877666655552
Q ss_pred -CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE----EcCC------CCChhHHHHHhccc
Q 007018 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWDF------PPKPKIFVHRVGRA 357 (621)
Q Consensus 289 -~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI----~~d~------P~s~~~~~qrvGR~ 357 (621)
..+..+++|.+|+..+|....+.|+.|.+++||+|-.+|+|+|+|.-+++| -||+ +.+|.+..|+.||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 124467899999999999999999999999999999999999999866666 3553 46889999999999
Q ss_pred CCCCC--ccEEEEEeccccHHHHHHH
Q 007018 358 ARAGR--TGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 358 gR~G~--~G~~i~~v~~~e~~~l~~l 381 (621)
||.+- .|..++.-...|+.|...+
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHh
Confidence 99764 4677777777777765554
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=9.8e-24 Score=210.12 Aligned_cols=305 Identities=21% Similarity=0.257 Sum_probs=217.0
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
++||.|+.+-..++ +.++.++.|.||+|||.... +.++.... .|.++.|.+|....+..++..++.. +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif-~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~a--F~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF-QGIEQALN----QGGRVCIASPRVDVCLELYPRLKQA--FS 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH-HHHHHHHh----cCCeEEEecCcccchHHHHHHHHHh--hc
Confidence 68999999876655 46899999999999998744 44444333 4889999999999999988877664 34
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHH-HHhcccC
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI-LGQLSEN 199 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~i-l~~l~~~ 199 (621)
+..+.+++|+..... ...++|+|...|++.- +.++++||||.|..--. -...+.-. -......
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk--------~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFK--------QAFDLLIIDEVDAFPFS-DDQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHH--------hhccEEEEecccccccc-CCHHHHHHHHHhhccc
Confidence 577888888764322 2679999988777543 34688999999974311 12233322 2334456
Q ss_pred CcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhH-------HHHHHHHHHHhccCCCcEEEE
Q 007018 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-------HAALLYMIREHISSDQQTLIF 272 (621)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k-------~~~L~~~l~~~~~~~~k~IVF 272 (621)
.-+|++|||+|+.+..-+..+- -..+.+....-..+-+.-.|+-+..-.| ...|..+|++..+.+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKGN--LRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhCC--eeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 6789999999998877655442 2233333332222222222332222221 136888999888889999999
Q ss_pred ecChhhHHHHHHHHHHC-C-CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC--CCChh
Q 007018 273 VSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--PPKPK 348 (621)
Q Consensus 273 ~~t~~~ve~l~~~L~~~-g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~--P~s~~ 348 (621)
+++....+.++..|+.. . ..+..+|+. ...|.+.++.|++|++++||+|.+++||+.+|+|+++|.-.- -.+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999999553 3 334677765 457888999999999999999999999999999998764332 25778
Q ss_pred HHHHHhcccCCCCC--ccEEEEEeccccHH
Q 007018 349 IFVHRVGRAARAGR--TGTAFSFVTSEDMA 376 (621)
Q Consensus 349 ~~~qrvGR~gR~G~--~G~~i~~v~~~e~~ 376 (621)
.++|.+||+||.-. +|.++.|-..-...
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 89999999999633 58887776654443
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=5.9e-23 Score=238.59 Aligned_cols=319 Identities=19% Similarity=0.249 Sum_probs=218.8
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.++|+|..++..++ .|.+.|+...+|.|||+..+..+ ..+..... ....+|||||.. |..||...+.++. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-~~gp~LIVvP~S-lL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-ITGPHMVVAPKS-TLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-CCCCEEEEeChH-HHHHHHHHHHHHC--C
Confidence 58999999998875 57789999999999998755433 34432211 223589999974 5577777777775 3
Q ss_pred CCeEEEEEcCCChHHHHH-H--HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 121 DLRISLLVGGDSMESQFE-E--LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~-~--l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
.+.+..++|......... . .....+|+|+|++.+...... +.-..+++||+||||++-+. ...+..++..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~ 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHhh
Confidence 466666666543222211 1 135689999999988765432 33446889999999998764 345666666665
Q ss_pred cCCcEEEEEccCc-HHHHHHHHh-cCCCCc----------------------------------eeee---ccCCCCCCC
Q 007018 198 ENRQTLLFSATLP-SALAEFAKA-GLRDPH----------------------------------LVRL---DVDTKISPD 238 (621)
Q Consensus 198 ~~~q~ll~SATl~-~~l~~~~~~-~l~~p~----------------------------------~i~~---~~~~~~~~~ 238 (621)
....+++||||- +.+.++... .+-.|. +++- +.....++.
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 445689999972 122221110 000110 0000 000011111
Q ss_pred ceEEEEEcc---------------------------------------------------------------hhhHHHHH
Q 007018 239 LKLAFFTLR---------------------------------------------------------------QEEKHAAL 255 (621)
Q Consensus 239 ~~~~~~~~~---------------------------------------------------------------~~~k~~~L 255 (621)
.. ..+.+. ...|...|
T Consensus 398 ~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lL 476 (1033)
T PLN03142 398 KE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLL 476 (1033)
T ss_pred ee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHH
Confidence 11 111111 11233444
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC---ceEEEecCcccccCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGIDI 332 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~---~~ILV~TdvaarGlDi 332 (621)
..++......+.++|||+......+.+..+|...|+.+..++|+++..+|..+++.|+... .-+|++|.+++.|||+
T Consensus 477 dkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINL 556 (1033)
T PLN03142 477 DKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINL 556 (1033)
T ss_pred HHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCch
Confidence 4455555556789999999999999999999999999999999999999999999998643 3578999999999999
Q ss_pred CCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEeccccH
Q 007018 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (621)
Q Consensus 333 p~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~ 375 (621)
..+++||+||+||+|....|++||+.|.|+.. .+|-|++.+-+
T Consensus 557 t~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 557 ATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred hhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999999999999999999999999975 45677777644
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.7e-23 Score=237.23 Aligned_cols=317 Identities=20% Similarity=0.285 Sum_probs=234.8
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH-HHH
Q 007018 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKE 115 (621)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~-~~~ 115 (621)
-....||. |-|+|++++-.+.+|..|+++||||||||.+.-.++...+.. |.++++.+|..+|..|.+.. +.+
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHHH
Confidence 34456886 999999999999999999999999999999988777766664 66799999999999999974 455
Q ss_pred hhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHh
Q 007018 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (621)
Q Consensus 116 l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~ 195 (621)
|+.. .-.+++++|..+ +..++.++|+|.+-|..++.+ +...+..+..|||||+|.+.+..-+..+.+++-.
T Consensus 186 fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred hhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 6644 334667777654 456788999999988888887 4577999999999999999999888999999999
Q ss_pred cccCCcEEEEEccCcHH--HHHHHHhcCCCCceeeeccCCCCCCCceEEEEEc-------chhhH--------H------
Q 007018 196 LSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-------RQEEK--------H------ 252 (621)
Q Consensus 196 l~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~-------~~~~k--------~------ 252 (621)
+|...+++++|||.|+. +..|....-..|..+.. .+.+..| +.+.++.- ....+ .
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~-t~~RpvP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS-TEHRPVP-LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe-ecCCCCC-eEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 99999999999999765 33444433334433333 3333332 22222211 00000 0
Q ss_pred ---------------------------------HHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH-----------
Q 007018 253 ---------------------------------AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------- 288 (621)
Q Consensus 253 ---------------------------------~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----------- 288 (621)
..++..+.. ...-++|+|+-++..|+..+..+..
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 001111111 1345899999999988876665542
Q ss_pred -----------------CCCC-------------ceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 289 -----------------EGLE-------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 289 -----------------~g~~-------------~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
.+++ +.++|++|=+.-+..+-..|..|.+.|+++|.+.+.|+|.|.-++|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv 492 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV 492 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccccee
Confidence 1221 3478999999999999999999999999999999999999975544
Q ss_pred EEcCC---------CCChhHHHHHhcccCCCCCc--cEEEEEeccc
Q 007018 339 INWDF---------PPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (621)
Q Consensus 339 I~~d~---------P~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~ 373 (621)
+ +.+ +.++..|.|..||+||.|.. |.+++.-.+.
T Consensus 493 ~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 493 F-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred e-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 3 332 45789999999999999975 8888875554
No 101
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=228.21 Aligned_cols=313 Identities=20% Similarity=0.262 Sum_probs=223.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.+|. |-++|++||-++..|..|++.|+|.+|||+++-.++.-. .. .+.|+++-+|-.+|..|-++.++.--..
T Consensus 294 ~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~----h~TR~iYTSPIKALSNQKfRDFk~tF~D- 366 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK----HMTRTIYTSPIKALSNQKFRDFKETFGD- 366 (1248)
T ss_pred CCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh----hccceEecchhhhhccchHHHHHHhccc-
Confidence 4664 899999999999999999999999999998765444322 12 4789999999999999988766553222
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
+.+++|... +...+.++|+|.+.|..++.+. .--++++++|||||.|-+.+...+-.+.+++=.+|...
T Consensus 367 ---vgLlTGDvq-------inPeAsCLIMTTEILRsMLYrg-adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 367 ---VGLLTGDVQ-------INPEASCLIMTTEILRSMLYRG-ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred ---cceeeccee-------eCCCcceEeehHHHHHHHHhcc-cchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 236777543 4567889999999999999874 34488999999999999998887888899999999999
Q ss_pred cEEEEEccCcHHHHHHHHh-cCCCCceeeeccCCCCCCCceEEEEEcch-------------------------------
Q 007018 201 QTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLRQ------------------------------- 248 (621)
Q Consensus 201 q~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~~~~~~~~~~~------------------------------- 248 (621)
++|++|||.|+..+ |+.. +-..-..+.+-...+-+-.+++.+++-..
T Consensus 436 ~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 436 NFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred eEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999999987644 3332 21111111111111111112221111000
Q ss_pred ---------------------------------hhH-HHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCC--
Q 007018 249 ---------------------------------EEK-HAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGL-- 291 (621)
Q Consensus 249 ---------------------------------~~k-~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~-- 291 (621)
..+ ....++++.... ..--++||||-+++.|+..+..|....+
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~ 594 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTD 594 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCccc
Confidence 001 012333332221 1345899999999999988888865221
Q ss_pred -------------------------------------CceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCC
Q 007018 292 -------------------------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (621)
Q Consensus 292 -------------------------------------~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~ 334 (621)
.++++||++-+--.+.+.--|..|-++||+||-..|.|+|.|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 1567899999988888888999999999999999999999997
Q ss_pred CCEEEEcCCC---------CChhHHHHHhcccCCCCCc--cEEEEEeccc
Q 007018 335 LDNVINWDFP---------PKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (621)
Q Consensus 335 v~~VI~~d~P---------~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~ 373 (621)
++||+-.+. -.|..|.|.+|||||.|-. |+++++....
T Consensus 675 -RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 -RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 455544432 3678999999999999864 7777766543
No 102
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=231.55 Aligned_cols=344 Identities=19% Similarity=0.219 Sum_probs=249.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHH--HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTM--PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~ai--p~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
++....-....+|...+..+|.+++ |.++.+++.+..+||+.|||++.-+.|+..+... ...++.+.|....+.
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv~ 283 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIVQ 283 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehhH
Confidence 3333333445579999999999997 6788999999999999999999999988877653 456899999888777
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhh-cCCCCcCCcceEEEeccccccCCChH
Q 007018 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFA 186 (621)
Q Consensus 108 Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~-~~~~~l~~l~~vViDEah~l~~~gf~ 186 (621)
.-...+..|....|+.+-...|+...... .+.-.+.|||-++-..++.. .+.-.+..+++||+||.|.+.+.+..
T Consensus 284 Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg 359 (1008)
T KOG0950|consen 284 EKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRG 359 (1008)
T ss_pred HHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccc
Confidence 76777888888889998888876655443 23467999999876544432 11235778999999999999999888
Q ss_pred HHHHHHHHhc-----ccCCcEEEEEccCcH--HHHHHHHhcCC--CCceeeeccCCCCCCCceEE------------EEE
Q 007018 187 EQLHKILGQL-----SENRQTLLFSATLPS--ALAEFAKAGLR--DPHLVRLDVDTKISPDLKLA------------FFT 245 (621)
Q Consensus 187 ~~l~~il~~l-----~~~~q~ll~SATl~~--~l~~~~~~~l~--~p~~i~~~~~~~~~~~~~~~------------~~~ 245 (621)
..+..++..+ ....|+++||||+|+ .+..|..+.+. +..-+.+....+..+.+... +..
T Consensus 360 ~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~ 439 (1008)
T KOG0950|consen 360 AILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSS 439 (1008)
T ss_pred hHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhh
Confidence 8887777654 234579999999985 35555554331 11222222211111111100 001
Q ss_pred cchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH-------------------------------------
Q 007018 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------- 288 (621)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~------------------------------------- 288 (621)
...++..+.+..++.+.+..+.++||||+++..|+.++..+..
T Consensus 440 ~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ 519 (1008)
T KOG0950|consen 440 NLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAK 519 (1008)
T ss_pred hcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHhe
Confidence 1111122456666777777788899999999999877644432
Q ss_pred -CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC----CCChhHHHHHhcccCCCCCc
Q 007018 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----PPKPKIFVHRVGRAARAGRT 363 (621)
Q Consensus 289 -~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~----P~s~~~~~qrvGR~gR~G~~ 363 (621)
....+.++|.++..+.|+.+-..|+.|...|++||+.++-|+|+|.-+++|-.-. +.+.-.|.|++|||||+|-.
T Consensus 520 ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gid 599 (1008)
T KOG0950|consen 520 TIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGID 599 (1008)
T ss_pred eccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccc
Confidence 0133778999999999999999999999999999999999999998887774322 24677899999999999864
Q ss_pred --cEEEEEeccccHHHHHHH
Q 007018 364 --GTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 364 --G~~i~~v~~~e~~~l~~l 381 (621)
|.+++++.+.|...+..+
T Consensus 600 T~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 600 TLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred cCcceEEEeeccchhHHHHH
Confidence 999999999987666543
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=7.4e-23 Score=235.68 Aligned_cols=328 Identities=23% Similarity=0.246 Sum_probs=221.5
Q ss_pred ChHHHHHHHHHHhcC---C-cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 46 PTPIQRKTMPLILSG---A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 46 ptpiQ~~aip~il~g---~-dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+.+.|..++..++.. . .++++||||+|||.+.++++...+... .....+++++.|+|.++.++++.++......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 589999999988864 4 688999999999999999999887764 23577899999999999999998888665544
Q ss_pred CeEEEEEcCCChHHHHHHHh---------------CCCCEEEECchHHHHhHhhcCCCC-c--CCcceEEEeccccccCC
Q 007018 122 LRISLLVGGDSMESQFEELA---------------QNPDIIIATPGRLMHHLSEVEDMS-L--KSVEYVVFDEADCLFGM 183 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~---------------~~~~IiV~Tpgrl~~~l~~~~~~~-l--~~l~~vViDEah~l~~~ 183 (621)
+.....+|... ........ .-..++++||-..+........+. + =....+||||+|.+.+.
T Consensus 275 ~~~~~~h~~~~-~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 275 VIGKSLHSSSK-EPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccc-chhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 43332233222 11111100 012344445443332111111111 1 12357999999998876
Q ss_pred ChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCC-CCCCceEEEEEcchhhHH--HHHHHHH
Q 007018 184 GFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKH--AALLYMI 259 (621)
Q Consensus 184 gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~--~~L~~~l 259 (621)
.....+..++..+ ..+..+|++|||+|+.+.+.....+.+...+....... ......+........... ..+...+
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 433 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELI 433 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcc
Confidence 3333333333333 34678999999999999998887766554443322100 001111111000000111 2345555
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHH----hcCCceEEEecCcccccCCCCCC
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF----RARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F----~~g~~~ILV~TdvaarGlDip~v 335 (621)
....+.+.+++|.|||+..|..++..|+..+.++..+||.+...+|.+.++.. ..+...|+|+|++++-|+||. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 56667889999999999999999999999888899999999999998776654 457789999999999999996 6
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCC--CccEEEEEeccccHHHH
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAYL 378 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G--~~G~~i~~v~~~e~~~l 378 (621)
+++|-= +...+..+||+||++|-| ..|.++++......++.
T Consensus 513 d~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~ 555 (733)
T COG1203 513 DVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYL 555 (733)
T ss_pred Ceeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCch
Confidence 777643 455899999999999999 56888888776655443
No 104
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.6e-21 Score=221.50 Aligned_cols=312 Identities=20% Similarity=0.289 Sum_probs=225.1
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~ 124 (621)
-+....+.+..+..+.-+++.|+||||||...-.-+++.-. ..+..+.+.-|.|--|..+++ +.++++...|-.|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 34555667777778888999999999999864433343322 234568889999988888877 4566666556555
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCCh-HHHHHHHHHhcccCCcE
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGF-AEQLHKILGQLSENRQT 202 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf-~~~l~~il~~l~~~~q~ 202 (621)
+.-+-.++ ....+..|-++|.|.|+..+.. +..|+.+++|||||+|+=. +..| ..-+..++...++.-++
T Consensus 127 GY~iRfe~------~~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFES------KVSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeec------cCCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 54443332 1235678999999999999986 4569999999999999632 2222 23445556667777899
Q ss_pred EEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEE-cchhh-HHHHHHHHHHHhcc-CCCcEEEEecChhhH
Q 007018 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEE-KHAALLYMIREHIS-SDQQTLIFVSTKHHV 279 (621)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~-~~~~~-k~~~L~~~l~~~~~-~~~k~IVF~~t~~~v 279 (621)
|+||||+... .|. .++.+..++.++... . .++..|.. ...+. -...+...+..+.. ..+.+|||.+.....
T Consensus 199 IimSATld~~--rfs-~~f~~apvi~i~GR~--f-PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE--RFS-AYFGNAPVIEIEGRT--Y-PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH--HHH-HHcCCCCEEEecCCc--c-ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999998654 333 455555555554432 2 23444422 22233 34555555555443 467899999999999
Q ss_pred HHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC------------
Q 007018 280 EFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------ 343 (621)
Q Consensus 280 e~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~------------ 343 (621)
+...+.|.+ ....+..+||.|+.++...+++.-..|.-+|+++|++|+.+|.||++.+||.-++
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999998 3467889999999999888877666676779999999999999999999996554
Q ss_pred ------CCChhHHHHHhcccCCCCCccEEEEEeccccHH
Q 007018 344 ------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (621)
Q Consensus 344 ------P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~ 376 (621)
|-|-....||.||+||.+ +|.||-+++.++..
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 345667899999999985 99999999986543
No 105
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=2.3e-21 Score=219.19 Aligned_cols=127 Identities=24% Similarity=0.293 Sum_probs=116.0
Q ss_pred chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc
Q 007018 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (621)
Q Consensus 247 ~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva 326 (621)
...+|..++...+......+.++||||+|+..++.++..|...|+++..+|+ .+.+|...+..|..+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456889999999887778999999999999999999999999999999997 68899999999999999999999999
Q ss_pred cccCCCC---CCC-----EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccH
Q 007018 327 ARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (621)
Q Consensus 327 arGlDip---~v~-----~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~ 375 (621)
+||+||+ .|. +||+++.|.+...|.||.||+||+|.+|.++.|++.+|.
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 9999999 343 459999999999999999999999999999999998653
No 106
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.89 E-value=1.3e-20 Score=221.17 Aligned_cols=333 Identities=21% Similarity=0.254 Sum_probs=212.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
+++...+.+...||. ++|.|.+.++ .+..++++++.|+||+|||++|++|++..+. .+.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----~~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----TEKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----CCCeEEEEeCcHHH
Confidence 445677778889997 8999998665 5557899999999999999999999987655 25589999999999
Q ss_pred HHHHHH-HHHHhhccCC--CeEEEEEcCCChH---H-----------------------H--------------------
Q 007018 106 ALQTLK-FTKELGRYTD--LRISLLVGGDSME---S-----------------------Q-------------------- 136 (621)
Q Consensus 106 a~Q~~~-~~~~l~~~~~--l~~~~~~gg~~~~---~-----------------------~-------------------- 136 (621)
..|+.. .+..+.+..+ ++++++.|+..+- . |
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999975 6666665544 7777777764320 0 0
Q ss_pred -H------------------------HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-------C
Q 007018 137 -F------------------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------G 184 (621)
Q Consensus 137 -~------------------------~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-------g 184 (621)
+ +.....++|||+...-|++.+.... .-+....++||||||++.+. .
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 0112246899999998887764422 22455689999999987521 0
Q ss_pred h-----HHH----------------------------------------------------------------HHHHHHh
Q 007018 185 F-----AEQ----------------------------------------------------------------LHKILGQ 195 (621)
Q Consensus 185 f-----~~~----------------------------------------------------------------l~~il~~ 195 (621)
+ ... +...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 000 0000000
Q ss_pred ---------------------c---------------------------ccCCcEEEEEccCcH--HHHHHHH-hcCCCC
Q 007018 196 ---------------------L---------------------------SENRQTLLFSATLPS--ALAEFAK-AGLRDP 224 (621)
Q Consensus 196 ---------------------l---------------------------~~~~q~ll~SATl~~--~l~~~~~-~~l~~p 224 (621)
. +....+|++|||++. ....+.+ .++.+.
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 012467899999963 2333332 344333
Q ss_pred ceeeeccCCCCC--CCceEEEE-Ec------chhhHHHHHHHHHHHhcc-CCCcEEEEecChhhHHHHHHHHHHC----C
Q 007018 225 HLVRLDVDTKIS--PDLKLAFF-TL------RQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREE----G 290 (621)
Q Consensus 225 ~~i~~~~~~~~~--~~~~~~~~-~~------~~~~k~~~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~----g 290 (621)
....+. .+... .+...... .+ ..+.-...+...+.+.+. .++++|||+++....+.++..|... +
T Consensus 624 ~~~~~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 624 HFNTIE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred ccceec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 322222 11111 11111110 01 112223345555544332 4578999999999999999999752 3
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCC--EEEEcCCCCC----------------------
Q 007018 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD--NVINWDFPPK---------------------- 346 (621)
Q Consensus 291 ~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~--~VI~~d~P~s---------------------- 346 (621)
+. .+..+.+ ..|..+++.|++++..||++|+..++|+|+|+.. +||...+|..
T Consensus 703 ~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f 779 (850)
T TIGR01407 703 YE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPF 779 (850)
T ss_pred ce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCch
Confidence 33 2333322 4688899999999999999999999999999866 4666676631
Q ss_pred --------hhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 347 --------PKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 347 --------~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
...+.|.+||.-|.....-+++++.+.
T Consensus 780 ~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 780 YDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHhhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 122479999999987654455555553
No 107
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=3.2e-22 Score=215.42 Aligned_cols=308 Identities=18% Similarity=0.252 Sum_probs=225.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH-HHhhccCCCe
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLR 123 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~-~~l~~~~~l~ 123 (621)
.+-|+|..||..+-++..|++.|.|.+|||.++-.++...|.. ..|+++-+|-.+|..|-|+.+ .+|+ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-----c
Confidence 4789999999999999999999999999999988888877765 568999999999999998855 4453 3
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEE
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~l 203 (621)
+++.+|... +..++.-+|+|.+-|..++.+. .--.+.+..|||||.|-|-+...+-.+.+-+-.+|++.+.+
T Consensus 199 VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVT-------INPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeeccee-------eCCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 455566543 3456789999999998888873 44578899999999999988766666666677789999999
Q ss_pred EEEccCcHHHH--HHHHhcCCCCceeeeccCCCCCCCceEEEEE---------cchh-----hHHHH-------------
Q 007018 204 LFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFFT---------LRQE-----EKHAA------------- 254 (621)
Q Consensus 204 l~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~---------~~~~-----~k~~~------------- 254 (621)
++|||+|+..+ +|+...-..|..+.... .+.. .++++.+. +... +....
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTd-yRPT-PLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTD-YRPT-PLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeec-CCCC-cceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999998643 44444445565443322 2221 13333221 2111 11111
Q ss_pred ----------------------HHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCC--------------------
Q 007018 255 ----------------------LLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGL-------------------- 291 (621)
Q Consensus 255 ----------------------L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~-------------------- 291 (621)
+..+++..+ ....++|||+-+++.||.++-.+.+..+
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 112222111 1346899999999999988766654221
Q ss_pred -------------------CceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCC--------
Q 007018 292 -------------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP-------- 344 (621)
Q Consensus 292 -------------------~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P-------- 344 (621)
.+.++||+|-+--.+-+.--|+.|-+++|.||...+.|||.|.-+ |++....
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkT-VvFT~~rKfDG~~fR 507 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKT-VVFTAVRKFDGKKFR 507 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCccee-EEEeeccccCCccee
Confidence 256789999998888788889999999999999999999999754 4443322
Q ss_pred -CChhHHHHHhcccCCCCCc--cEEEEEeccc
Q 007018 345 -PKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (621)
Q Consensus 345 -~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~ 373 (621)
-+.-.|+|..|||||.|.. |.+|+++...
T Consensus 508 wissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 508 WISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eecccceEEecccccccCCCCCceEEEEecCc
Confidence 2566799999999999875 8888888763
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.4e-20 Score=209.74 Aligned_cols=280 Identities=20% Similarity=0.314 Sum_probs=196.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|| .|+..|+-....++.|+.+-+.||||.|||.- .+.|.-.+.. .|.+++||+||..|+.|+++.++.++...
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 366 69999999999999999999999999999963 4333333333 47899999999999999999999998776
Q ss_pred C-CeEEE-EEcCCChHH---HHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-----------C
Q 007018 121 D-LRISL-LVGGDSMES---QFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (621)
Q Consensus 121 ~-l~~~~-~~gg~~~~~---~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-----------~ 183 (621)
+ +.+.. +++.-+..+ -.+.+ .++.||+|+|...|.+.... +.-.++++|++|.+|.++. .
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~---L~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE---LSKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH---hcccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 6 44444 344323322 22333 45899999999988877664 3335789999999997763 2
Q ss_pred ChHHH-----------------------HHHHHHhc--------ccCCcEEEEEccCcHHH--HHHHHhcCCCCceeeec
Q 007018 184 GFAEQ-----------------------LHKILGQL--------SENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLD 230 (621)
Q Consensus 184 gf~~~-----------------------l~~il~~l--------~~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~ 230 (621)
||.+. +.+++... .+..+++..|||..+.- ..+.+..++ +.+.
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG 305 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVG 305 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccC
Confidence 33332 11111110 12357899999974321 223333222 1111
Q ss_pred cCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecC---hhhHHHHHHHHHHCCCCceeecCCCCHHHHHH
Q 007018 231 VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST---KHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307 (621)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t---~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~ 307 (621)
.......++...|... .-...+..+++.. +...|||++. ++.++.+++.|+..|+++..+|+. .+.
T Consensus 306 ~~~~~LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~ 374 (1187)
T COG1110 306 SGGEGLRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEE 374 (1187)
T ss_pred ccchhhhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chh
Confidence 1111222344344433 3444556666665 5679999999 999999999999999999999874 256
Q ss_pred HHHHHhcCCceEEEec----CcccccCCCCC-CCEEEEcCCC
Q 007018 308 HVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFP 344 (621)
Q Consensus 308 ~l~~F~~g~~~ILV~T----dvaarGlDip~-v~~VI~~d~P 344 (621)
.++.|..|++++||++ .++-||||+|. +.++|+|+.|
T Consensus 375 ~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 375 ALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 7999999999999986 57899999995 7889999988
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=6e-20 Score=202.73 Aligned_cols=319 Identities=21% Similarity=0.202 Sum_probs=225.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--+.-.++.| -|+...||+|||++..+|++-... .|..+-|++|+.-||.|-++++..+..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 466 4999999999888877 477999999999999999886654 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhh-----cCCCCcCCcceEEEecccccc-C-----------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSE-----VEDMSLKSVEYVVFDEADCLF-G----------- 182 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~-----~~~~~l~~l~~vViDEah~l~-~----------- 182 (621)
|++++++.++.+..+..... .+||+++|...| +++|.. ........+.++||||+|.++ +
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999999887765443333 589999999765 233322 112234668899999999765 1
Q ss_pred ---CChHHHHHHHHHhcccC--------C---------------------------------------------------
Q 007018 183 ---MGFAEQLHKILGQLSEN--------R--------------------------------------------------- 200 (621)
Q Consensus 183 ---~gf~~~l~~il~~l~~~--------~--------------------------------------------------- 200 (621)
......+..+...+.++ .
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 01222222333322211 1
Q ss_pred -----------------------------------------------------------cEEEEEccCcHHHHHHHHhcC
Q 007018 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (621)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (621)
.+.+||+|......+|...+-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 233444444443334333332
Q ss_pred CCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
-+ .+.+....+....-....+.....+|..+++..+.+....+.|+||.+.|....+.++..|.+.|+++.+++..-.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 11 1222111111100001122334567889999999888889999999999999999999999999999999998744
Q ss_pred HHHHHHHHHHHhcCC-ceEEEecCcccccCCCCC---------------CCEEEEcCCCCChhHHHHHhcccCCCCCccE
Q 007018 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL---------------LDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~-~~ILV~TdvaarGlDip~---------------v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~ 365 (621)
..+-. ++. +.|+ -.|.|||++|+||.||.- --+||....|.|...-.|-.||+||.|.+|.
T Consensus 463 ~~EA~-IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEAR-IIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHHH-HHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 33322 222 3454 369999999999999973 2379999999999999999999999999999
Q ss_pred EEEEecccc
Q 007018 366 AFSFVTSED 374 (621)
Q Consensus 366 ~i~~v~~~e 374 (621)
+-.|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999998654
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=3.2e-20 Score=209.68 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
..+...|+..++.....+.++||||+|+..++.++..|...|+.+..+||++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 34667888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcC-----CCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 329 GIDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 329 GlDip~v~~VI~~d-----~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
|+|+|.+++||++| +|.+...|+||+||+||. ..|.+++|+...+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999998 899999999999999998 68999999998765544333
No 111
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.86 E-value=4.3e-20 Score=199.15 Aligned_cols=306 Identities=20% Similarity=0.283 Sum_probs=209.6
Q ss_pred HHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeEEEEE
Q 007018 51 RKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLV 128 (621)
Q Consensus 51 ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~~~~~ 128 (621)
.+.+..+..++-+++.|.||||||.- +| +.|.+.. ...|. +-+.-|.|.-|..+++ +..+.+...|-.++..+
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQ--ip--QyL~eaG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQ--IP--QYLAEAGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCcccc--Hh--HHHHhcccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 35556666778899999999999984 33 3333322 22344 8888999999988887 66667666665554443
Q ss_pred cCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-C-hHHHHHHHHHhcccCCcEEEEE
Q 007018 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-G-FAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 129 gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-g-f~~~l~~il~~l~~~~q~ll~S 206 (621)
-=++. -.....|.+.|.|.|++.+.. +-.++.+++||+||||+=.-. . ..-.+..++..- +.-++|++|
T Consensus 132 RFed~------ts~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimS 202 (674)
T KOG0922|consen 132 RFEDS------TSKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMS 202 (674)
T ss_pred Eeccc------CCCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEe
Confidence 21111 123578999999999998875 456899999999999963211 0 122333333333 356799999
Q ss_pred ccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHH-HHHHHHHHHhc-cCCCcEEEEecChhhHHHHHH
Q 007018 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH-AALLYMIREHI-SSDQQTLIFVSTKHHVEFLNV 284 (621)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~-~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~ 284 (621)
||+... ....++.+..++.+... .-| ++..|..-+..+-. +.+...++-+. .+.+-+|||....+.++.+++
T Consensus 203 ATlda~---kfS~yF~~a~i~~i~GR--~fP-Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 203 ATLDAE---KFSEYFNNAPILTIPGR--TFP-VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeecHH---HHHHHhcCCceEeecCC--CCc-eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 998633 33344555334444332 222 33344332322322 23333332222 356689999999999999999
Q ss_pred HHHHC----CC----CceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC-------------
Q 007018 285 LFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------- 343 (621)
Q Consensus 285 ~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~------------- 343 (621)
.|.+. +- -+..+||.|+.++...++..-..|..+|+++|++|+..+.||++.+||.-++
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 99875 11 1367999999999888877777788999999999999999999999995443
Q ss_pred -----CCChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 344 -----PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 344 -----P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
|-|-..-.||.||+||.| +|.||-+++..++..
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred ceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 457777899999999985 999999999887643
No 112
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.85 E-value=1.7e-19 Score=205.15 Aligned_cols=143 Identities=20% Similarity=0.294 Sum_probs=127.1
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccccc
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarG 329 (621)
.+...|+..+......+.++||||+|+..++.++..|...|+++..+||++++.+|..++..|+.|++.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 35677888888777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEcCC-----CCChhHHHHHhcccCCCCCccEEEEEecc---------ccHHHHHHHHHHhCCCCcCCC
Q 007018 330 IDIPLLDNVINWDF-----PPKPKIFVHRVGRAARAGRTGTAFSFVTS---------EDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 330 lDip~v~~VI~~d~-----P~s~~~~~qrvGR~gR~G~~G~~i~~v~~---------~e~~~l~~l~~~l~~~~~~~p 393 (621)
+|+|.+++||++|. |.+...|+||+||+||. ..|.|++|++. .|...+.+++..++......|
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 99999999999884 78999999999999996 78999999995 455666666666666655555
No 113
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.6e-18 Score=195.76 Aligned_cols=319 Identities=21% Similarity=0.253 Sum_probs=219.7
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--.-=.+ ...-++...||+|||+++.+|++-... .|..+-|++|+.-||.|-++++..+..+.
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 464 4777887654333 455789999999999999999886654 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-C----------C
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------M 183 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~----------~ 183 (621)
|+++.++.++.+..+..... .+||++||..-| +++|... ...-...+.++||||+|.++ + .
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 99999998877665544433 399999999886 4444431 11124789999999999876 1 0
Q ss_pred -----ChHHHHHHHHHhccc--------------------CC--------------------------------------
Q 007018 184 -----GFAEQLHKILGQLSE--------------------NR-------------------------------------- 200 (621)
Q Consensus 184 -----gf~~~l~~il~~l~~--------------------~~-------------------------------------- 200 (621)
.....+..++..+.. .+
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 112222222222210 01
Q ss_pred -----------------------------------------------------------------------------cEE
Q 007018 201 -----------------------------------------------------------------------------QTL 203 (621)
Q Consensus 201 -----------------------------------------------------------------------------q~l 203 (621)
.+.
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 112
Q ss_pred EEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHH
Q 007018 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (621)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~ 283 (621)
+||+|....-.+|...|--+ ++.+....+....-....+.....+|..+++.-+......+.|+||-+.|....+.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls 466 (913)
T PRK13103 389 GMTGTADTEAFEFRQIYGLD--VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMS 466 (913)
T ss_pred cCCCCCHHHHHHHHHHhCCC--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHH
Confidence 23333322222222222111 1111111110000011123344567999999999988889999999999999999999
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-ceEEEecCcccccCCCC-----------------------------
Q 007018 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIP----------------------------- 333 (621)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~ILV~TdvaarGlDip----------------------------- 333 (621)
.+|...|++..+++......+-..+ . +.|+ -.|.|||++|+||.||.
T Consensus 467 ~~L~~~gi~h~VLNAk~~~~EA~II-a--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (913)
T PRK13103 467 NLLKKEGIEHKVLNAKYHEKEAEII-A--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQK 543 (913)
T ss_pred HHHHHcCCcHHHhccccchhHHHHH-H--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 9999999999888876543332322 2 4564 46999999999999994
Q ss_pred --------CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 334 --------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 334 --------~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
+--+||-...|.|...=.|-.||+||.|.+|.+-.|++-+|
T Consensus 544 ~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 544 RHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22378989999999999999999999999999999998754
No 114
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=192.86 Aligned_cols=308 Identities=20% Similarity=0.288 Sum_probs=211.5
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh-hCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCe
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ-HVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLR 123 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~-~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~ 123 (621)
.+++-.+.+.++..++=++++|.||||||.- +| +.|.+ .-...|.++-+--|.|.-|..++. +.++.+...|-.
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iP--QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IP--QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCcccc--cc--HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 3445556666777777899999999999984 44 33332 223446668888999999999876 556665444333
Q ss_pred EEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc-cCCChHHHHHHHHHhcccCCc
Q 007018 124 ISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFAEQLHKILGQLSENRQ 201 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l-~~~gf~~~l~~il~~l~~~~q 201 (621)
|+.-+ .|+.. ....-|-++|.|.|++-+.. ..+|.++.+|||||||.- +.....--+..=+.+..+.-.
T Consensus 342 VGYsI-------RFEdcTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 342 VGYSI-------RFEDCTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred cceEE-------EeccccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 32211 12222 23455779999999988775 578999999999999952 222222222222334456778
Q ss_pred EEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHH-hc-cCCCcEEEEecChhhH
Q 007018 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-HI-SSDQQTLIFVSTKHHV 279 (621)
Q Consensus 202 ~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~-~~-~~~~k~IVF~~t~~~v 279 (621)
+++.|||+... -...++.+..++++....- .+...|-..+..+-.++.+..+.+ +. .+.+-+|||....+..
T Consensus 413 llIsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEI 486 (902)
T KOG0923|consen 413 LLISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEI 486 (902)
T ss_pred EEeeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHH
Confidence 99999998643 3445666666666644321 123333333333444443333332 22 3567899999998888
Q ss_pred HHHHHHHHHC----C-----CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC-------
Q 007018 280 EFLNVLFREE----G-----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------- 343 (621)
Q Consensus 280 e~l~~~L~~~----g-----~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~------- 343 (621)
+...+.|... | +-+..+|++|+++....+++.--.|-..|++||++|...|.|+++..||.-++
T Consensus 487 Et~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsyn 566 (902)
T KOG0923|consen 487 ETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYN 566 (902)
T ss_pred HHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcC
Confidence 8777666542 2 34678999999999999988888888999999999999999999999996554
Q ss_pred -----------CCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 344 -----------PPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 344 -----------P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
|-|-..-.||+||+||.| +|.|+-+++..
T Consensus 567 prtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 567 PRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 345666799999999987 99999999843
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.84 E-value=7.2e-19 Score=200.77 Aligned_cols=314 Identities=19% Similarity=0.177 Sum_probs=186.6
Q ss_pred CChHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~ 114 (621)
.|+++|..|+..+.. .+..++..+||||||++.+..+...+.. ....++|||+|+.+|..|+.+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHH
Confidence 389999999987642 2469999999999998876555433321 246789999999999999999888
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhc-CCCCcCCc-ceEEEeccccccCCChHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEV-EDMSLKSV-EYVVFDEADCLFGMGFAEQLHK 191 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~-~~~~l~~l-~~vViDEah~l~~~gf~~~l~~ 191 (621)
.++... ..+..+.......+. ....|+|+|...|...+... ..+....- -+||+||||+.....+...+.
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~- 387 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLK- 387 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHH-
Confidence 876311 111122222223332 34789999999997643321 11222111 289999999965433332222
Q ss_pred HHHhcccCCcEEEEEccCcHHHHH-HHHhcC--CCCceeeeccCCCCCCCceE--EEEEcch-----hh-----------
Q 007018 192 ILGQLSENRQTLLFSATLPSALAE-FAKAGL--RDPHLVRLDVDTKISPDLKL--AFFTLRQ-----EE----------- 250 (621)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~-~~~~~l--~~p~~i~~~~~~~~~~~~~~--~~~~~~~-----~~----------- 250 (621)
..+| +...++|||||-..-.. -...+. ..+.+........+.+.... .|..... .+
T Consensus 388 --~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~ 464 (667)
T TIGR00348 388 --KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFE 464 (667)
T ss_pred --hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHH
Confidence 3444 56799999998421100 001110 01222222222222222111 1111100 00
Q ss_pred -----------------------------HHHHHHHHHHHh----c-cCCCcEEEEecChhhHHHHHHHHHHCC-----C
Q 007018 251 -----------------------------KHAALLYMIREH----I-SSDQQTLIFVSTKHHVEFLNVLFREEG-----L 291 (621)
Q Consensus 251 -----------------------------k~~~L~~~l~~~----~-~~~~k~IVF~~t~~~ve~l~~~L~~~g-----~ 291 (621)
....+...+.++ . ..+.+++|||.++.+|..++..|.+.. .
T Consensus 465 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~ 544 (667)
T TIGR00348 465 LLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEA 544 (667)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCC
Confidence 001111111111 1 125899999999999999999887652 3
Q ss_pred CceeecCCCCHH---------------------HHHHHHHHHhc-CCceEEEecCcccccCCCCCCCEEEEcCCCCChhH
Q 007018 292 EPSVCYGDMDQD---------------------ARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (621)
Q Consensus 292 ~~~~l~g~l~~~---------------------~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~ 349 (621)
...++++..+.. .....+++|+. +..+|||++|++..|+|.|.+.+++..-+-. ...
T Consensus 545 ~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~h~ 623 (667)
T TIGR00348 545 SAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-YHG 623 (667)
T ss_pred eeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-ccH
Confidence 344555543222 12367888976 6789999999999999999999887655444 456
Q ss_pred HHHHhcccCCC-C--C-ccEEEEEecc
Q 007018 350 FVHRVGRAARA-G--R-TGTAFSFVTS 372 (621)
Q Consensus 350 ~~qrvGR~gR~-G--~-~G~~i~~v~~ 372 (621)
++|.+||+.|. + + .|.++-|+..
T Consensus 624 LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 624 LLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HHHHHHHhccccCCCCCCEEEEECcCh
Confidence 89999999993 2 2 2555555543
No 116
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.84 E-value=1.7e-19 Score=173.97 Aligned_cols=186 Identities=40% Similarity=0.597 Sum_probs=154.9
Q ss_pred HCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 40 RKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
..++..|+|+|.++++.++.+ +.+++.++||||||.+++.++++.+... ...++||++|++.++.|+.+.+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 457788999999999999999 9999999999999999999999887653 245799999999999999998888776
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCC-CEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 119 YTDLRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~-~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
..........++......+..+..+. +|+++|++.+.+.+... ......++++|+||+|.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 55545566666666555555665555 99999999999988763 35678899999999999997678899999999888
Q ss_pred cCCcEEEEEccCcHHHHHHHHhcCCCCceeee
Q 007018 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (621)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (621)
...+++++|||+++.....+..++.++..+..
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 89999999999999999988888875554443
No 117
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.83 E-value=8.2e-19 Score=184.13 Aligned_cols=166 Identities=22% Similarity=0.275 Sum_probs=130.3
Q ss_pred CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhh
Q 007018 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH 278 (621)
Q Consensus 199 ~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ 278 (621)
.+|+++.|||+.+.-.+. ..- +-..-.+....-..|.+. .-+.....+.|+.-++.....+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~--s~~-~vveQiIRPTGLlDP~ie----vRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQ--SGG-NVVEQIIRPTGLLDPEIE----VRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHh--ccC-ceeEEeecCCCCCCCcee----eecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 469999999976542222 110 000011111111112111 1123446788889998888899999999999999
Q ss_pred HHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcC-----CCCChhHHHHH
Q 007018 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD-----FPPKPKIFVHR 353 (621)
Q Consensus 279 ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d-----~P~s~~~~~qr 353 (621)
+|.+.++|.+.|+++.++|++.+.-+|..++.+.+.|.++|||+-+.+-.|||+|.|.+|..+| +..|...++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877 46788999999
Q ss_pred hcccCCCCCccEEEEEecc
Q 007018 354 VGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 354 vGR~gR~G~~G~~i~~v~~ 372 (621)
+|||+|. -.|.++.+...
T Consensus 539 IGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHhhc-cCCeEEEEchh
Confidence 9999995 57999988764
No 118
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.83 E-value=1.6e-19 Score=203.65 Aligned_cols=333 Identities=11% Similarity=0.031 Sum_probs=211.0
Q ss_pred EcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHH----HHHHh
Q 007018 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ----FEELA 141 (621)
Q Consensus 66 ~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~----~~~l~ 141 (621)
.+.+|||||.+|+-.+-+.|.. |.++|||+|++.|+.|+.+.++.... +-.+..++++.+..+. .....
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 3446999999999777766653 78899999999999999887775431 2567888887766544 34445
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-----CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHH
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-----~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~ 216 (621)
+..+|+|||...++ .++.++++||+||.|.-. ...|..+-..++.....+..+||.|||++ ++.+
T Consensus 239 G~~~IViGtRSAvF--------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS--les~ 308 (665)
T PRK14873 239 GQARVVVGTRSAVF--------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART--AEAQ 308 (665)
T ss_pred CCCcEEEEcceeEE--------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC--HHHH
Confidence 67899999999886 789999999999999754 23356666666666667899999999954 5555
Q ss_pred HHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-----------HHHHHHHHHHHhccCCCcEEEEecChhhHH-----
Q 007018 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-----------KHAALLYMIREHISSDQQTLIFVSTKHHVE----- 280 (621)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-----------k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve----- 280 (621)
....-+....+................+..+..+ -...++..+++.+..+ ++|||+|.+..+-
T Consensus 309 ~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~ 387 (665)
T PRK14873 309 ALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACA 387 (665)
T ss_pred HHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhh
Confidence 4443333332222221111122233333332210 2246788888888888 9999998442222
Q ss_pred ------------------------------------------------------HHHHHHHHCCCCceeecCCCCHHHHH
Q 007018 281 ------------------------------------------------------FLNVLFREEGLEPSVCYGDMDQDARK 306 (621)
Q Consensus 281 ------------------------------------------------------~l~~~L~~~g~~~~~l~g~l~~~~R~ 306 (621)
.+.+.|......+.++. ++. .
T Consensus 388 ~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r--~d~---d 462 (665)
T PRK14873 388 RCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT--SGG---D 462 (665)
T ss_pred hCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE--ECh---H
Confidence 33333333221121221 222 2
Q ss_pred HHHHHHhcCCceEEEecC----cccccCCCCCCCEEEEcCC------C---C---ChhHHHHHhcccCCCCCccEEEEEe
Q 007018 307 IHVSRFRARKTMFLIVTD----VAARGIDIPLLDNVINWDF------P---P---KPKIFVHRVGRAARAGRTGTAFSFV 370 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~Td----vaarGlDip~v~~VI~~d~------P---~---s~~~~~qrvGR~gR~G~~G~~i~~v 370 (621)
.+++.|. ++.+|||+|+ +++ ++++.|+..|. | . ....+.|.+||+||.+..|.+++..
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 4678886 5999999999 666 35677665442 2 1 2344589999999999999998876
Q ss_pred ccc----------cHHHHHHHHHHhCCCCcCCCCHHHHHhhhh-hHHHHHHHHH--hcCCccccccchhH
Q 007018 371 TSE----------DMAYLLDLHLFLSKPIRAAPSEEEVLLDMD-GVMSKIDQAI--ANGETIYGRFPQTV 427 (621)
Q Consensus 371 ~~~----------e~~~l~~l~~~l~~~~~~~p~~~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~ 427 (621)
.++ |+..|..-++..++.+.+||....+..... .....+.+.+ ..+..++|++|..+
T Consensus 537 ~p~~~~~~~l~~~d~~~F~~~EL~~R~~~~~PPf~~la~i~~~~~~~~~~~~~~~~~~~~~vlGPvp~~~ 606 (665)
T PRK14873 537 ESSLPTVQALIRWDPVGHAERELAERAEVGFPPAVRMAAVDGRPAAVAALLEAAGLPDGAEVLGPVPLPP 606 (665)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHHHHHHcCccCceeeEEEEEcHHHHHHHHHHhcCCCCCEEECCcCCcc
Confidence 554 334566666677778888885443222111 0111111111 23457899998764
No 119
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.82 E-value=6.2e-18 Score=196.39 Aligned_cols=320 Identities=18% Similarity=0.239 Sum_probs=204.3
Q ss_pred HHHCCCCCChHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHH-HH
Q 007018 38 IKRKGYKVPTPIQRKTMPLI----LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL-KF 112 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~i----l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~-~~ 112 (621)
+...||. ++|-|.+-+..+ ..++.+++.|+||+|||++|++|++... .+.+++|++||++|+.|+. +.
T Consensus 239 ~~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 239 IALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred hccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHH
Confidence 3345775 999999844433 3568899999999999999999988753 2578999999999999995 67
Q ss_pred HHHhhccCCCeEEEEEcCCChHH--H---------------------------------------------HHH------
Q 007018 113 TKELGRYTDLRISLLVGGDSMES--Q---------------------------------------------FEE------ 139 (621)
Q Consensus 113 ~~~l~~~~~l~~~~~~gg~~~~~--~---------------------------------------------~~~------ 139 (621)
+..+++..++++.++.||..+-- . +..
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 88888888888887777643210 0 000
Q ss_pred ------------------HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-----h-------HH--
Q 007018 140 ------------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----F-------AE-- 187 (621)
Q Consensus 140 ------------------l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-----f-------~~-- 187 (621)
-...++|+|+...-|+..+...+ .+...+++||||||++.+.. . ..
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 01236899999988887765422 35678999999999875210 0 00
Q ss_pred --------------------------------------------HH---------------HHHHHh------c------
Q 007018 188 --------------------------------------------QL---------------HKILGQ------L------ 196 (621)
Q Consensus 188 --------------------------------------------~l---------------~~il~~------l------ 196 (621)
.+ ..++.. +
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00 000000 0
Q ss_pred ---------------------ccCCcEEEEEccCc--HHHHHHHH-hcCCCCceeeeccCCCCCCCceEEEEE--cc---
Q 007018 197 ---------------------SENRQTLLFSATLP--SALAEFAK-AGLRDPHLVRLDVDTKISPDLKLAFFT--LR--- 247 (621)
Q Consensus 197 ---------------------~~~~q~ll~SATl~--~~l~~~~~-~~l~~p~~i~~~~~~~~~~~~~~~~~~--~~--- 247 (621)
+....+|++|||++ +... +.. .++.......+. ... ..-...++. ++
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~~~-~~~~~~~i~~~~p~~~ 625 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--KDK-KQDQLVVVDQDMPLVT 625 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--CCh-HHccEEEeCCCCCCCC
Confidence 01236799999995 3333 432 344333222221 100 011111111 11
Q ss_pred ---hhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 248 ---QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 248 ---~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
.+.-...+...+......+++++|+++|....+.++..|....+.+ ...|... .+..++++|+.++..||++|+
T Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 626 ETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 1233345666665555567899999999999999999997664444 4444221 245679999999899999999
Q ss_pred cccccCCCCC--CCEEEEcCCCC----C--------------------------hhHHHHHhcccCCCCCccEEEEEecc
Q 007018 325 VAARGIDIPL--LDNVINWDFPP----K--------------------------PKIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 325 vaarGlDip~--v~~VI~~d~P~----s--------------------------~~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
...+|+|+|. ...||...+|. + .-.+.|-+||.-|....--+++++.+
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999984 45566666662 1 12258999999997653224555554
Q ss_pred c
Q 007018 373 E 373 (621)
Q Consensus 373 ~ 373 (621)
.
T Consensus 783 R 783 (820)
T PRK07246 783 R 783 (820)
T ss_pred c
Confidence 3
No 120
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.7e-18 Score=190.16 Aligned_cols=319 Identities=19% Similarity=0.212 Sum_probs=219.8
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--.-=.+..| -++...||-|||++..+|+.-... .|..+-|++..--||.-=.+++..+-.+.
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 466 4889998877655555 579999999999999999864433 36778889999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-C-----------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G----------- 182 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~----------- 182 (621)
|+.++++..+....+.... -.+||+++|...| +++|... ...-...+.+.||||+|.++ +
T Consensus 147 GLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 9999999987665544333 3589999999765 3444321 11225678899999999775 1
Q ss_pred ----CChHHHHHHHHHhccc--------CC--------------------------------------------------
Q 007018 183 ----MGFAEQLHKILGQLSE--------NR-------------------------------------------------- 200 (621)
Q Consensus 183 ----~gf~~~l~~il~~l~~--------~~-------------------------------------------------- 200 (621)
..+...+..++..+.. .+
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 0122223333332221 01
Q ss_pred ----------------------------------------------------------cEEEEEccCcHHHHHHHHhcCC
Q 007018 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (621)
Q Consensus 201 ----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l~ 222 (621)
.+-+||+|....-.+|...+--
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 1223333333333333332211
Q ss_pred CCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCH
Q 007018 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (621)
Q Consensus 223 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (621)
.++.+....+....-....+......|..+++..+.+....+.|+||.|.|...++.++..|...|++..+++..-.
T Consensus 385 --~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 --RVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred --CEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 11111111110000000122334567888999988888788999999999999999999999999999999988644
Q ss_pred HHHHHHHHHHhcCC-ceEEEecCcccccCCCCCCC--------EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 303 DARKIHVSRFRARK-TMFLIVTDVAARGIDIPLLD--------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 303 ~~R~~~l~~F~~g~-~~ILV~TdvaarGlDip~v~--------~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
+++..+-. +.|. -.|.|||++|+||.||.--. +||....|.|...=-|..||+||.|.+|.+-.|++-+
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33322222 4564 47999999999999997433 8999999999999999999999999999998888865
Q ss_pred c
Q 007018 374 D 374 (621)
Q Consensus 374 e 374 (621)
|
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 4
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.7e-18 Score=185.17 Aligned_cols=310 Identities=21% Similarity=0.290 Sum_probs=201.7
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhh-hCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccC
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ-HVPQGGVRALILSPTRDLALQTLK-FTKELGRYT 120 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~-~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~ 120 (621)
|.-....+.+.+..|..++-+++++.||||||.-.- +.|.. .-...| -+-+--|.|.-|..+++ +..+++...
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~----QyL~edGY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLA----QYLYEDGYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhH----HHHHhcccccCC-eeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 334455666667777778889999999999998532 33332 222233 45566799999999887 445564444
Q ss_pred CCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhccc
Q 007018 121 DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSE 198 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~ 198 (621)
|-.++.-+ .|+... .+..|-++|.|-|++-... .-.|.++.+||+||||.-. +....--+...+-.-..
T Consensus 429 G~~VGYsI-------RFEdvT~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 429 GDTVGYSI-------RFEDVTSEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccccceEE-------EeeecCCCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 43332222 223332 3466889999999876654 4668999999999999643 22111111111222234
Q ss_pred CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHH-HHHHHHHHhcc-CCCcEEEEecCh
Q 007018 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHIS-SDQQTLIFVSTK 276 (621)
Q Consensus 199 ~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~-~L~~~l~~~~~-~~~k~IVF~~t~ 276 (621)
+..+|.+|||+.. ..|..-+-+.| .+.+.... .| +...|...+.++-.. ++...+.-++. ..+.+|||....
T Consensus 500 dlKliVtSATm~a--~kf~nfFgn~p-~f~IpGRT--yP-V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNFFGNCP-QFTIPGRT--YP-VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred cceEEEeeccccH--HHHHHHhCCCc-eeeecCCc--cc-eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 6789999999753 34554443344 33333222 22 344444444333332 22223322332 347899999887
Q ss_pred hhHHHHHHHHH----H------CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC---
Q 007018 277 HHVEFLNVLFR----E------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF--- 343 (621)
Q Consensus 277 ~~ve~l~~~L~----~------~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~--- 343 (621)
+.++-.+..+. + .++.+..+|+.|+++-...+++.-..|..+++|+|++|+..|.||++.+||..++
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 76665444443 2 2577899999999998888877777788899999999999999999999996554
Q ss_pred ---------------CCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 344 ---------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 344 ---------------P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
|-|-..--||.||+||.| +|.||-+++.+
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 445566689999999986 99999999874
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=4.7e-19 Score=195.23 Aligned_cols=297 Identities=19% Similarity=0.235 Sum_probs=195.4
Q ss_pred CCChHHHHHHHHHHh----cC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 44 KVPTPIQRKTMPLIL----SG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 44 ~~ptpiQ~~aip~il----~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
..|+++|..||..+. .| +.+++...||+|||.+++ .++.+|.+.. .-+|+|+|+-++.|+.|.+..+..+.-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhCC
Confidence 368999999997765 34 348888889999998855 4555665532 356899999999999999987777643
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc----CCCCcCCcceEEEeccccccCCChHHHHHHHHH
Q 007018 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (621)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~----~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~ 194 (621)
+.. .+..+.+ .. ....+.|.|+|..++...+... ..+....+++||+||||| |.......|+.
T Consensus 241 ~~~-~~n~i~~-~~-------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~d 307 (875)
T COG4096 241 FGT-KMNKIED-KK-------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILD 307 (875)
T ss_pred Ccc-ceeeeec-cc-------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHH
Confidence 321 1222221 11 1124789999999998777542 235566799999999999 45556668888
Q ss_pred hcccCCcEEEEEccCcHHHHHHHH-------------------hcCCCCceeeeccCCC----CCCCc------------
Q 007018 195 QLSENRQTLLFSATLPSALAEFAK-------------------AGLRDPHLVRLDVDTK----ISPDL------------ 239 (621)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~-------------------~~l~~p~~i~~~~~~~----~~~~~------------ 239 (621)
++..-.+.+ +||+...+..--. .+|-.|..++++.+.. .....
T Consensus 308 YFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 876544333 8997553222111 1223334444332110 00000
Q ss_pred -eEEEEEcch-------hhHHHHHHHHHHHhccC------CCcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCC
Q 007018 240 -KLAFFTLRQ-------EEKHAALLYMIREHISS------DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDM 300 (621)
Q Consensus 240 -~~~~~~~~~-------~~k~~~L~~~l~~~~~~------~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l 300 (621)
.-..+...+ ......+...+.+.+.. -++|||||.+..||+++...|... |--+..|.|+-
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 000011111 11223334444444433 468999999999999999999875 23366777776
Q ss_pred CHHHHHHHHHHHhcCC--ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCC
Q 007018 301 DQDARKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (621)
Q Consensus 301 ~~~~R~~~l~~F~~g~--~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~ 360 (621)
.+.++ .+..|...+ ..|.|+.|++..|+|+|.|-++|.+..-.|...|.|++||.-|.
T Consensus 466 ~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 466 EQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 55544 356666533 47888889999999999999999999999999999999999995
No 123
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1e-19 Score=188.73 Aligned_cols=319 Identities=17% Similarity=0.222 Sum_probs=224.2
Q ss_pred CChHHHHHHHHHHhcC---CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g---~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+++|+|.+++..+..+ +..++..|+|+|||++-+.++. .+ .+++||||.+-.-+.||...++.+....+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti-------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI-------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee-------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 6899999999988743 6799999999999987553322 21 45699999999999999999988887766
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhh-------cCCCCcCCcceEEEeccccccCCChHHHHHHHHH
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~-------~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~ 194 (621)
-.++..+.... +....++.|+|+|+..+.+.-.+ |..+.-..++++|+||.|.+-.+-|...+..+-.
T Consensus 374 ~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a 448 (776)
T KOG1123|consen 374 DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA 448 (776)
T ss_pred cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH
Confidence 67777776443 12356899999999876432211 1123456789999999999877667766666555
Q ss_pred hcccCCcEEEEEccCcHHHHHHHH-hcCCCCceeeec--------------cCCCC-------------CCCceEEEEEc
Q 007018 195 QLSENRQTLLFSATLPSALAEFAK-AGLRDPHLVRLD--------------VDTKI-------------SPDLKLAFFTL 246 (621)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~-~~l~~p~~i~~~--------------~~~~~-------------~~~~~~~~~~~ 246 (621)
+.. ++++||+-.+-..+.. .+|-.|.++.-+ -...+ ........+.+
T Consensus 449 HcK-----LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 449 HCK-----LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred Hhh-----ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 443 8899997322111111 112222222110 00000 01111222334
Q ss_pred chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceEEEecCc
Q 007018 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTDV 325 (621)
Q Consensus 247 ~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILV~Tdv 325 (621)
....|..+...+++.+-..+.++|||..+.-....++..|.+ -.|||..+|.+|..+++.|+.+ .++.++..-|
T Consensus 524 MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 455677777788888877899999999988777777666644 4699999999999999999976 5788888999
Q ss_pred ccccCCCCCCCEEEEcCCC-CChhHHHHHhcccCCCCC------ccEEEEEeccc--cHHHHHHHHHHhC
Q 007018 326 AARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGR------TGTAFSFVTSE--DMAYLLDLHLFLS 386 (621)
Q Consensus 326 aarGlDip~v~~VI~~d~P-~s~~~~~qrvGR~gR~G~------~G~~i~~v~~~--e~~~l~~l~~~l~ 386 (621)
+...+|+|..+++|+..-- .|-.+-.||.||.-|+.+ ....|++|+.+ |+.|-..-+.||-
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FLi 668 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFLI 668 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhhh
Confidence 9999999999999988754 466778999999999843 24568888875 5666655555553
No 124
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.80 E-value=6.9e-18 Score=183.04 Aligned_cols=321 Identities=20% Similarity=0.297 Sum_probs=222.0
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.++|+|.+.+.++. .|-++++...+|-|||+-. |.++-.|.......|+ -|||||-..|..+ ...+++|. .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GP-fLVi~P~StL~NW-~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGP-FLVIAPKSTLDNW-MNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCC-eEEEeeHhhHHHH-HHHHHHhC--C
Confidence 58999999988765 4678999999999999763 3444455543333455 7999999888554 34444443 3
Q ss_pred CCeEEEEEcCCChHHHHH-H-H-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 121 DLRISLLVGGDSMESQFE-E-L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~-~-l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
++.+.+++|.......+. . + ....+|+|+|++..+.--. .+.--.+.|+|||||||+-+. ...+..+++.+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcch--hhHHHHHHHHhc
Confidence 688888888754333221 1 2 3478999999998875422 244557899999999999875 366777777775
Q ss_pred cCCcEEEEEccCc-HHHHHHHHh-cCCCCceee-------------------------------------eccCCCCCCC
Q 007018 198 ENRQTLLFSATLP-SALAEFAKA-GLRDPHLVR-------------------------------------LDVDTKISPD 238 (621)
Q Consensus 198 ~~~q~ll~SATl~-~~l~~~~~~-~l~~p~~i~-------------------------------------~~~~~~~~~~ 238 (621)
... .+|+|+|+- +++.++... .+--|.++. .+.+...++.
T Consensus 317 ~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 TDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred ccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 443 478888862 111111100 000000000 0011111111
Q ss_pred ceEEEEE----------------------------------------------------------------cchhhHHHH
Q 007018 239 LKLAFFT----------------------------------------------------------------LRQEEKHAA 254 (621)
Q Consensus 239 ~~~~~~~----------------------------------------------------------------~~~~~k~~~ 254 (621)
.+...+. +....|+..
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 1111100 011124445
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC---ceEEEecCcccccCC
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGID 331 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~---~~ILV~TdvaarGlD 331 (621)
|-.+|......+++||||..--...+-+..++.-.++....+.|+++-++|...++.|.... .-.|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 55555555567899999999888899999999999999999999999999999999998865 346889999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEeccccHH
Q 007018 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMA 376 (621)
Q Consensus 332 ip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~~ 376 (621)
+...|.||.||--|+|..=+|..-||+|.|+.- .+|-|++.+-+.
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999999999999999999999864 567788877553
No 125
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.80 E-value=5.1e-18 Score=192.40 Aligned_cols=319 Identities=19% Similarity=0.185 Sum_probs=221.8
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRI 124 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~ 124 (621)
.+..++..+..|.++.-+++.|.||+|||.-..--+++....+. ...++++--|.|--|..+++ +..+.+...+-.+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 46677888888889999999999999999876655566554432 56778999999988888887 4455555556555
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEE
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~l 203 (621)
+.-++..+.. .....+.+||.|.|++.+.. ...+..+..||+||+|.=. +..|.-.+...+-...+.-++|
T Consensus 252 GYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 252 GYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred eEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 5555544322 23478999999999999986 5668999999999999644 4444444444444444688999
Q ss_pred EEEccCcHHHHHHHHhcCCCCceeeeccCCCCC----------------CCceEE------------EEEcchhhHHHHH
Q 007018 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS----------------PDLKLA------------FFTLRQEEKHAAL 255 (621)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~----------------~~~~~~------------~~~~~~~~k~~~L 255 (621)
|||||+.. +....+++....+.+....... ...... ......+.....+
T Consensus 324 LMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 324 LMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred Eeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999863 3334444454455443211000 000000 0000111222222
Q ss_pred HHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHC-------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc
Q 007018 256 LYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (621)
Q Consensus 256 ~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~-------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva 326 (621)
..++.... ...+.+|||.++......+.+.|... .+-+..+|+.|+..+...++...-.|...|+++|.+|
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 22222211 34678999999999999999999752 2456789999999999999888888999999999999
Q ss_pred cccCCCCCCCEEEE--------cCCCC----------ChhHHHHHhcccCCCCCccEEEEEeccccHHHH
Q 007018 327 ARGIDIPLLDNVIN--------WDFPP----------KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378 (621)
Q Consensus 327 arGlDip~v~~VI~--------~d~P~----------s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l 378 (621)
+.+|-||+|-+||. ||+-. +-..-.||.||+||. ++|.||.+++...+..+
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~ 549 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKL 549 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhc
Confidence 99999999999995 44332 334458999999997 69999999998765443
No 126
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.6e-18 Score=188.15 Aligned_cols=299 Identities=22% Similarity=0.310 Sum_probs=197.3
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHH-HhhhC--CCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeEE--
Q 007018 52 KTMPLILSGADVVAMARTGSGKTAAFLVPMLQR-LNQHV--PQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRIS-- 125 (621)
Q Consensus 52 ~aip~il~g~dvv~~a~TGSGKT~afllp~l~~-L~~~~--~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~~-- 125 (621)
+++..|..+--|+++|.||||||.- +|-+-. ....+ ...+.-+-|--|.|.-|..+++ +..+++. .+-.++
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 4555666666799999999999984 342211 11111 1113346778899999999887 5666765 333333
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-----CChHHHHHHHHHhccc--
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSE-- 198 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-----~gf~~~l~~il~~l~~-- 198 (621)
.-+.|. +..+..|.++|.|-|++-+.. ++.|..+..||+||||.-.- .|...++..+.+.+..
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333 345688999999999999886 78899999999999996432 2445555555555443
Q ss_pred ----CCcEEEEEccCcHHHHHHH--HhcC-CCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHH------hccC
Q 007018 199 ----NRQTLLFSATLPSALAEFA--KAGL-RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE------HISS 265 (621)
Q Consensus 199 ----~~q~ll~SATl~~~l~~~~--~~~l-~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~------~~~~ 265 (621)
.-..|+||||+- +.+|. +..+ .-|.++.++...- | +..+|- .....+.+.+..++ .+ +
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQf--P-VsIHF~---krT~~DYi~eAfrKtc~IH~kL-P 480 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQF--P-VSIHFN---KRTPDDYIAEAFRKTCKIHKKL-P 480 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccC--c-eEEEec---cCCCchHHHHHHHHHHHHhhcC-C
Confidence 456899999974 33443 1222 2344555554432 1 122221 11122233222222 22 4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCC-------------------------------------------------------
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREEG------------------------------------------------------- 290 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g------------------------------------------------------- 290 (621)
.+.+|||+...+.++++.+.|++..
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 6779999999999999999997620
Q ss_pred --------------------------------------------CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc
Q 007018 291 --------------------------------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (621)
Q Consensus 291 --------------------------------------------~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva 326 (621)
+-|..+|+-|+..+..++++.--.|..-++|+|+||
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 014456667777777777777777888899999999
Q ss_pred cccCCCCCCCEEEEcCCC--------CCh----------hHHHHHhcccCCCCCccEEEEEeccc
Q 007018 327 ARGIDIPLLDNVINWDFP--------PKP----------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 327 arGlDip~v~~VI~~d~P--------~s~----------~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
+..|.||++.+||..+.- ... ..--||+||+||.| +|.||-+++..
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999999965532 222 22369999999987 89999999864
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.77 E-value=6e-17 Score=182.45 Aligned_cols=279 Identities=20% Similarity=0.195 Sum_probs=184.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|.. |++.|--+.= .-.+.-++...||.|||+++.+|+.-... .|..+-|++++..||.+-++++..+-++.
T Consensus 73 lG~r-~ydvQlig~l--~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGL--VLNDGKIAEMKTGEGKTLVATLPAYLNAL-----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhH--hhcCCccccccCCCCchHHHHHHHHHHHh-----cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4665 8888877653 33566899999999999999999863332 37779999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-CC----------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GM---------- 183 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~~---------- 183 (621)
|+.++++.++.+..+.... -.+||+.+|...| +++|... ...-...+.++|+||+|.++ +.
T Consensus 145 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 9999999888776654333 3589999999654 2333321 11235668899999999775 10
Q ss_pred -----ChHHHHHHHHHhcccC-----------------------------------------------------------
Q 007018 184 -----GFAEQLHKILGQLSEN----------------------------------------------------------- 199 (621)
Q Consensus 184 -----gf~~~l~~il~~l~~~----------------------------------------------------------- 199 (621)
........+...+..+
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111222222222110
Q ss_pred ---------------------------------------------------------CcEEEEEccCcHHHHHHHHhcCC
Q 007018 200 ---------------------------------------------------------RQTLLFSATLPSALAEFAKAGLR 222 (621)
Q Consensus 200 ---------------------------------------------------------~q~ll~SATl~~~l~~~~~~~l~ 222 (621)
..+.+||+|....-.+|...+--
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 02344555544433344333311
Q ss_pred CCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCH
Q 007018 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (621)
Q Consensus 223 ~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (621)
.++.+....+....-....+.....+|..+++..+.+....+.|+||-+.|....+.++..|...|++..+++..-.+
T Consensus 383 --~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 --EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred --CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 112222111111000011223344568888888888888899999999999999999999999999999999986422
Q ss_pred HHHH-HHHHHHhcCC-ceEEEecCcccccCCCC
Q 007018 303 DARK-IHVSRFRARK-TMFLIVTDVAARGIDIP 333 (621)
Q Consensus 303 ~~R~-~~l~~F~~g~-~~ILV~TdvaarGlDip 333 (621)
.+++ .++. +.|+ -.|.|||++|+||.||.
T Consensus 461 ~~~EA~IIA--~AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVA--QAGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHH--hcCCCCcEEEeccccCCCcCee
Confidence 2222 2333 2554 46999999999999985
No 128
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=1.3e-16 Score=174.09 Aligned_cols=317 Identities=21% Similarity=0.290 Sum_probs=216.5
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHH---HHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~---afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.+.|+|+..+..+. ++...|+...+|-|||. +||..+.+. ...-..+|||||.- +..||.+.++.+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S-----~k~~~paLIVCP~T-ii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS-----GKLTKPALIVCPAT-IIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc-----ccccCceEEEccHH-HHHHHHHHHHHhC
Confidence 46899999998875 45678999999999994 444333322 11224699999975 5577777666664
Q ss_pred ccCCCeEEEEEcCCCh------------HHHHH-HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC
Q 007018 118 RYTDLRISLLVGGDSM------------ESQFE-ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (621)
Q Consensus 118 ~~~~l~~~~~~gg~~~------------~~~~~-~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g 184 (621)
..+++..++|..+. +.... ....+..|+|+|+..+.-. . +.+.-..++|+|+||.|++-+..
T Consensus 279 --p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 --PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred --cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcccccCCc
Confidence 35778888775542 11111 1123456999999876522 1 23555678999999999998764
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccC-cHHHHHHHHh--------------------------------------------
Q 007018 185 FAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA-------------------------------------------- 219 (621)
Q Consensus 185 f~~~l~~il~~l~~~~q~ll~SATl-~~~l~~~~~~-------------------------------------------- 219 (621)
.++...+..++ ..+.+.+|+|+ -+.+.++...
T Consensus 354 --s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 45555555554 34446666664 2222222210
Q ss_pred ---------------------------------------------cCCCCc-----------eeeeccCCCCC--CCceE
Q 007018 220 ---------------------------------------------GLRDPH-----------LVRLDVDTKIS--PDLKL 241 (621)
Q Consensus 220 ---------------------------------------------~l~~p~-----------~i~~~~~~~~~--~~~~~ 241 (621)
++..+. ++-++.-.++. |.+..
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 000000 00000000000 00000
Q ss_pred ----------EE-EEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHH-HCCCCceeecCCCCHHHHHHHH
Q 007018 242 ----------AF-FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHV 309 (621)
Q Consensus 242 ----------~~-~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~-~~g~~~~~l~g~l~~~~R~~~l 309 (621)
.+ -......|+..+..++....+.+.++|+|..++...+.+...|. ..|+.+..+.|..+...|...+
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 00 11122347788888888888899999999999999999999999 5899999999999999999999
Q ss_pred HHHhcCCc-e-EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEeccccH
Q 007018 310 SRFRARKT-M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (621)
Q Consensus 310 ~~F~~g~~-~-ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~ 375 (621)
++|+.++. . .|++|.|.+-|+|+...+-||.||+-|+|.+=.|..-|+-|.|++- .+|-|++..-+
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcH
Confidence 99998874 3 5779999999999999999999999999999999999999999873 45777777544
No 129
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=5.7e-15 Score=166.26 Aligned_cols=279 Identities=19% Similarity=0.217 Sum_probs=183.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|. .|+++|--.-=.+ +..-++...||-|||+++.+|+.-... .|..+-|++++..||..-++++..+-++.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL-----~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL-----TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh-----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 355 3778887665444 455799999999999999999876544 37779999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-----HHhHhh-cCCCCcCCcceEEEecccccc-CC--------C-
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLF-GM--------G- 184 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-----~~~l~~-~~~~~l~~l~~vViDEah~l~-~~--------g- 184 (621)
|+.++++.++.+..+. .-.-.+||+++|++.| .+.+.. ........+.+.||||+|.++ +. |
T Consensus 154 GLtvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 9999999877655443 2344799999999887 444432 122345778899999999876 10 1
Q ss_pred ------hHHHHHHHHHhccc--------------CCc-------------------------------------------
Q 007018 185 ------FAEQLHKILGQLSE--------------NRQ------------------------------------------- 201 (621)
Q Consensus 185 ------f~~~l~~il~~l~~--------------~~q------------------------------------------- 201 (621)
.......+...+.+ ..+
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 11122222222211 111
Q ss_pred -----------------------------------------------------------------EEEEEccCcHHHHHH
Q 007018 202 -----------------------------------------------------------------TLLFSATLPSALAEF 216 (621)
Q Consensus 202 -----------------------------------------------------------------~ll~SATl~~~l~~~ 216 (621)
+.+||+|....-.+|
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 223333332222222
Q ss_pred HHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceee
Q 007018 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (621)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l 296 (621)
...+-- .++.+....+....-....+.....+|..+++..+.+....+.|+||-+.|....+.++..|...|++..++
T Consensus 392 ~~iY~l--~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 392 EKTYKL--EVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHhCC--cEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 222211 111111111000000011123334678899999888888899999999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHhcCCc-eEEEecCcccccCCCC
Q 007018 297 YGDMDQDARK-IHVSRFRARKT-MFLIVTDVAARGIDIP 333 (621)
Q Consensus 297 ~g~l~~~~R~-~~l~~F~~g~~-~ILV~TdvaarGlDip 333 (621)
+..-.+.+++ .++. ..|+. .|-|||++|+||.||.
T Consensus 470 NAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 470 NAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 9863222222 2333 25654 6999999999999986
No 130
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=2.2e-16 Score=163.84 Aligned_cols=327 Identities=20% Similarity=0.221 Sum_probs=215.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.+.|...+.++...+.+++.----.+..+.+.+..+..++-+++.|.||||||.-.--.+++....+ ...+..--|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~----~~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH----LTGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh----ccceeecCc
Confidence 7899999999999999988765556777777888888899999999999999985544444444433 234677789
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC-CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~-~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
.|.-|.+++. +.+...++..+--+|- ...|+.... +.-+-.+|.|.|++-... +-.+..+++||+||||.-
T Consensus 100 rrvaamsva~---RVadEMDv~lG~EVGy---sIrfEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 100 RRVAAMSVAQ---RVADEMDVTLGEEVGY---SIRFEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHER 171 (699)
T ss_pred hHHHHHHHHH---HHHHHhccccchhccc---cccccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhh
Confidence 9999988665 3333334444433332 112222222 122336788888766654 456899999999999963
Q ss_pred c--CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHH
Q 007018 181 F--GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (621)
Q Consensus 181 ~--~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~ 258 (621)
. ..-..-.+.+++..-| .-.++.+|||+.. .-...++.++.++.+... ...+..|..-...+...+.+..
T Consensus 172 tlATDiLmGllk~v~~~rp-dLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNRP-DLKLVVMSATLDA---EKFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred hHHHHHHHHHHHHHHhhCC-CceEEEeecccch---HHHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHHHHHH
Confidence 2 1112234455555554 7789999999743 244567778777766541 1234444333333444444333
Q ss_pred HHH-h-ccCCCcEEEEecChhhHHHHHHHHHHC---------CCCceeecCCCCHHHHHHHHHHH---hcC--CceEEEe
Q 007018 259 IRE-H-ISSDQQTLIFVSTKHHVEFLNVLFREE---------GLEPSVCYGDMDQDARKIHVSRF---RAR--KTMFLIV 322 (621)
Q Consensus 259 l~~-~-~~~~~k~IVF~~t~~~ve~l~~~L~~~---------g~~~~~l~g~l~~~~R~~~l~~F---~~g--~~~ILV~ 322 (621)
+.+ + ....+-++||....+..+..++.+... .+.+..+|- .....+++.- ++| ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEE
Confidence 322 2 234678999999998888777777632 245667772 2222222111 112 2479999
Q ss_pred cCcccccCCCCCCCEEEEcCC------------------CCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 323 TDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 323 TdvaarGlDip~v~~VI~~d~------------------P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
|.++...+.|+++.+||.-++ |-|-..-.||.||+||. ++|.|+.++++.
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999996554 45677788999999996 799999999864
No 131
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=3.6e-17 Score=147.87 Aligned_cols=121 Identities=39% Similarity=0.664 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
+.|...+..++......++++||||++..+++.+...|...+..+..+||+++...|..++..|.++...||++|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 36888888888887667889999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEE
Q 007018 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (621)
Q Consensus 329 GlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~ 369 (621)
|+|+|.+++||.+++|++...|.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999888764
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=99.72 E-value=5.3e-18 Score=185.14 Aligned_cols=323 Identities=22% Similarity=0.278 Sum_probs=187.4
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 38 IKRKGYKVPTPIQRKTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g-----~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
|.-+.=..|+|+|+.||....+| |.-++|| +|+|||+..|- +.+.|. ..++|+|+|++.|..|+.+.
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsLk-isEala------~~~iL~LvPSIsLLsQTlre 225 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSLK-ISEALA------AARILFLVPSISLLSQTLRE 225 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHHH-HHHHHh------hhheEeecchHHHHHHHHHH
Confidence 33333447999999999999876 4567776 89999998763 333443 36799999999999998764
Q ss_pred HHHhhccCCCeEEEEEcCCCh--------------------HHHHHHH-----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 113 TKELGRYTDLRISLLVGGDSM--------------------ESQFEEL-----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 113 ~~~l~~~~~l~~~~~~gg~~~--------------------~~~~~~l-----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
...- +...++...+++.+.. ..-...+ ..+--||++|+..+...-.. ....+.
T Consensus 226 w~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G~~ 303 (1518)
T COG4889 226 WTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAGLD 303 (1518)
T ss_pred Hhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcCCC
Confidence 3322 1234444444433221 1111111 23456899999988765543 456788
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcc-----cCCcEEEEEccCc---HHHHHHHHh-----------cCCCCceee
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLP---SALAEFAKA-----------GLRDPHLVR 228 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~-----~~~q~ll~SATl~---~~l~~~~~~-----------~l~~p~~i~ 228 (621)
.+++||.|||||.....+...-..-+.+.- +....+.|+||+. .+...-++. ..-.|.+.+
T Consensus 304 ~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 304 EFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred CccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhc
Confidence 999999999999764332221111111111 1234588889861 111111110 001122222
Q ss_pred eccCCCCC----CCceEEEEEcchhh----------------HHHH---HH----HHHHHhcc------------CCCcE
Q 007018 229 LDVDTKIS----PDLKLAFFTLRQEE----------------KHAA---LL----YMIREHIS------------SDQQT 269 (621)
Q Consensus 229 ~~~~~~~~----~~~~~~~~~~~~~~----------------k~~~---L~----~~l~~~~~------------~~~k~ 269 (621)
+.-..... .+....++.+.... ..+. ++ .+.++... +-.+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 22111111 11222222222111 1111 11 11111110 11346
Q ss_pred EEEecChhhHHHHHHHHHH-------------CCC--CceeecCCCCHHHHHHHHH---HHhcCCceEEEecCcccccCC
Q 007018 270 LIFVSTKHHVEFLNVLFRE-------------EGL--EPSVCYGDMDQDARKIHVS---RFRARKTMFLIVTDVAARGID 331 (621)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~-------------~g~--~~~~l~g~l~~~~R~~~l~---~F~~g~~~ILV~TdvaarGlD 331 (621)
|-||.+.+....+++.+.. .++ .+.++.|.|+..+|...+. .|...+++||--...++.|+|
T Consensus 464 IaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVD 543 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVD 543 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCC
Confidence 7788777666555444432 233 4455668999988854433 456678999999999999999
Q ss_pred CCCCCEEEEcCCCCChhHHHHHhcccCCC--CC-ccEEEEEe
Q 007018 332 IPLLDNVINWDFPPKPKIFVHRVGRAARA--GR-TGTAFSFV 370 (621)
Q Consensus 332 ip~v~~VI~~d~P~s~~~~~qrvGR~gR~--G~-~G~~i~~v 370 (621)
+|.+|.||++++..+.-+.+|.+||+.|- |+ .|..|+=+
T Consensus 544 VPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 544 VPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999999994 32 26555443
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.71 E-value=1.4e-14 Score=171.37 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCC--ceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 252 HAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE--PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 252 ~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~--~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
...+...+.+.+ ..+++++||+++....+.++..|...... ...+.-+++...|..+++.|+.++-.||++|....+
T Consensus 737 ~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwE 816 (928)
T PRK08074 737 IEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccC
Confidence 345555555544 35679999999999999999999764321 122222333345788999999998899999999999
Q ss_pred cCCCCC--CCEEEEcCCCC-Ch-----------------------------hHHHHHhcccCCCCCccEEEEEeccc
Q 007018 329 GIDIPL--LDNVINWDFPP-KP-----------------------------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 329 GlDip~--v~~VI~~d~P~-s~-----------------------------~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
|+|+|+ +.+||...+|. .| ..+.|-+||.-|....--+++++.+.
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999996 47788777763 11 12479999999987553345555553
No 134
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.69 E-value=2.6e-16 Score=165.86 Aligned_cols=278 Identities=19% Similarity=0.235 Sum_probs=179.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
-++-+|||.||||.-++ +++.. ..++++..|.|-||..+++.++..+ +.|.+++|.+......+ .
T Consensus 193 Ii~H~GPTNSGKTy~AL----qrl~~-----aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL----QRLKS-----AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred EEEEeCCCCCchhHHHH----HHHhh-----hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--C
Confidence 36679999999998755 56654 4468999999999999999888775 88888888654322211 1
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhccc-CCcEEEEEccCcHHHHHHHHhc
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAG 220 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~~~~~ 220 (621)
..+..+-||-+.+- --..+++.||||.+.|.+...+..++..+--+.. ...+ .+- +++.++.+..
T Consensus 258 ~~a~hvScTVEM~s---------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHL---CGe--psvldlV~~i 323 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVS---------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHL---CGE--PSVLDLVRKI 323 (700)
T ss_pred CcccceEEEEEEee---------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhc---cCC--chHHHHHHHH
Confidence 23556666644221 1345789999999999987655555544333221 1111 111 2333333332
Q ss_pred CC---CCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCC-ceee
Q 007018 221 LR---DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVC 296 (621)
Q Consensus 221 l~---~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l 296 (621)
+. +...++. |..+.+-.-...++.-+... ..+-.|| |-+++..-.+...+.+.|.. +++|
T Consensus 324 ~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 324 LKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HhhcCCeeEEEe-------------ecccCcceehhhhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEEE
Confidence 21 2111111 11111111112334444433 2344544 44667788888888888776 9999
Q ss_pred cCCCCHHHHHHHHHHHhc--CCceEEEecCcccccCCCCCCCEEEEcCCC---------CChhHHHHHhcccCCCCCc--
Q 007018 297 YGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDFP---------PKPKIFVHRVGRAARAGRT-- 363 (621)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~--g~~~ILV~TdvaarGlDip~v~~VI~~d~P---------~s~~~~~qrvGR~gR~G~~-- 363 (621)
||+++++.|...-..|++ ++++||||||++++|+|+ +++-||+|++- -+..+..|.+||+||.|..
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999998 899999999999999999 58889988863 4677789999999998653
Q ss_pred -cEEEEEeccccHHHHHHHHHHhCCCC
Q 007018 364 -GTAFSFVTSEDMAYLLDLHLFLSKPI 389 (621)
Q Consensus 364 -G~~i~~v~~~e~~~l~~l~~~l~~~~ 389 (621)
|.+.++..+ |+.. ++..+..+.
T Consensus 467 ~G~vTtl~~e-DL~~---L~~~l~~p~ 489 (700)
T KOG0953|consen 467 QGEVTTLHSE-DLKL---LKRILKRPV 489 (700)
T ss_pred CceEEEeeHh-hHHH---HHHHHhCCc
Confidence 666665443 3444 444455443
No 135
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=1.6e-14 Score=161.38 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=62.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC----CceEEEecCcccccCCC--------
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR----KTMFLIVTDVAARGIDI-------- 332 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g----~~~ILV~TdvaarGlDi-------- 332 (621)
.++.++|.+.+....+.++..|...---...+.|..+ .+...+++|+.. ...||++|+.+..|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5779999999999999999999764323455666543 345578888874 78999999999999999
Q ss_pred C--CCCEEEEcCCCC
Q 007018 333 P--LLDNVINWDFPP 345 (621)
Q Consensus 333 p--~v~~VI~~d~P~ 345 (621)
| .+.+||...+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3 488899888874
No 136
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=1e-15 Score=138.93 Aligned_cols=144 Identities=42% Similarity=0.605 Sum_probs=115.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+.+++.++||+|||..++.++.+.+..+ ...+++|++|++.|+.|+.+.+...... ++.+..+.++.....+....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 4689999999999999998888776542 3568999999999999999988777655 78888888887777766666
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
..+.+|+++|++.+...+... ......++++||||+|.+....+...............+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 778999999999998877653 34466789999999999887655544333445556788999999996
No 137
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.69 E-value=4.2e-15 Score=154.70 Aligned_cols=316 Identities=16% Similarity=0.191 Sum_probs=214.7
Q ss_pred CCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 43 YKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+..+-|+|++.+...+ +|..+++...+|-|||.-++..+-....+ -..||+||.. |-..|.+.+.+|.--..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE------wplliVcPAs-vrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE------WPLLIVCPAS-VRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc------CcEEEEecHH-HhHHHHHHHHHhccccc
Confidence 3457799999998765 57789999999999998877444433332 2489999975 44566666766643322
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q 201 (621)
.+.++.++.+... .+.....|.|.+++.+.++-. .+....+.+||+||+|.+-+.. ..+...++..+.....
T Consensus 269 -pi~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akh 340 (689)
T KOG1000|consen 269 -PIFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKH 340 (689)
T ss_pred -ceEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhh
Confidence 2445555544321 233456799999987765543 3445568999999999987643 4556677777777778
Q ss_pred EEEEEccC----c---------------HHHHHHHHhcCCCC-ceeeecc--------------------------CCCC
Q 007018 202 TLLFSATL----P---------------SALAEFAKAGLRDP-HLVRLDV--------------------------DTKI 235 (621)
Q Consensus 202 ~ll~SATl----~---------------~~l~~~~~~~l~~p-~~i~~~~--------------------------~~~~ 235 (621)
+||+|+|+ | +...+|+..++..- .-+..+. -...
T Consensus 341 vILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qL 420 (689)
T KOG1000|consen 341 VILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQL 420 (689)
T ss_pred eEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999997 2 23344554443211 0111111 0112
Q ss_pred CCCceEEEEEcchh-------------------------------------hHHHHHHHHHHH----hccCCCcEEEEec
Q 007018 236 SPDLKLAFFTLRQE-------------------------------------EKHAALLYMIRE----HISSDQQTLIFVS 274 (621)
Q Consensus 236 ~~~~~~~~~~~~~~-------------------------------------~k~~~L~~~l~~----~~~~~~k~IVF~~ 274 (621)
++..+...+.+... .|...+.+.|.. .-.++.+.+||+.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 23322222222210 022333333333 1235679999999
Q ss_pred ChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-ceE-EEecCcccccCCCCCCCEEEEcCCCCChhHHHH
Q 007018 275 TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352 (621)
Q Consensus 275 t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~I-LV~TdvaarGlDip~v~~VI~~d~P~s~~~~~q 352 (621)
.....+.+...+.+.++....|.|..+...|....+.|+.++ +.| +++--+++.||++...++||+..++++|..++|
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQ 580 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQ 580 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEe
Confidence 999999999999999999999999999999999999999865 444 345567899999999999999999999999999
Q ss_pred HhcccCCCCCccEE--EEEeccc
Q 007018 353 RVGRAARAGRTGTA--FSFVTSE 373 (621)
Q Consensus 353 rvGR~gR~G~~G~~--i~~v~~~ 373 (621)
.-.|++|.|++.-+ +.|+..+
T Consensus 581 AEDRaHRiGQkssV~v~ylvAKg 603 (689)
T KOG1000|consen 581 AEDRAHRIGQKSSVFVQYLVAKG 603 (689)
T ss_pred chhhhhhccccceeeEEEEEecC
Confidence 99999999997543 4444443
No 138
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.69 E-value=1.4e-14 Score=162.13 Aligned_cols=322 Identities=16% Similarity=0.176 Sum_probs=202.2
Q ss_pred CChHHHHHHHHHHhc---CC-------cEEEEcCCCchHHHHHHHHHHHHHhhhCC--CCCeEEEEEcchHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILS---GA-------DVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 45 ~ptpiQ~~aip~il~---g~-------dvv~~a~TGSGKT~afllp~l~~L~~~~~--~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
.++|+|++.+..+.. |. .+++.-.+|+|||+..+.-+...|...+. ..-.++||++|. .|+..|.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999987642 22 47777789999999876666666655421 111679999997 456666665
Q ss_pred HHHhhccCCCeEEEEEcCCChH----HHHHHH---hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh
Q 007018 113 TKELGRYTDLRISLLVGGDSME----SQFEEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (621)
Q Consensus 113 ~~~l~~~~~l~~~~~~gg~~~~----~~~~~l---~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf 185 (621)
+.++.....+....+.|+.+.. ..+..+ .-...|++.+++.+.+++.. +....++++|+||.|++-+.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch--
Confidence 5555433456666666666530 001111 11345778888888777764 55778999999999998764
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCc-HHHHHHHHh-cCCCCceeee----------------------------------
Q 007018 186 AEQLHKILGQLSENRQTLLFSATLP-SALAEFAKA-GLRDPHLVRL---------------------------------- 229 (621)
Q Consensus 186 ~~~l~~il~~l~~~~q~ll~SATl~-~~l~~~~~~-~l~~p~~i~~---------------------------------- 229 (621)
...+...+..+. .++.|++|+|+= +.+.++... .+-+|.+...
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 245555556664 445688899961 222222211 1111111000
Q ss_pred -----------c--cCCCCCCCceEEEEEcchhh----------------------------------------------
Q 007018 230 -----------D--VDTKISPDLKLAFFTLRQEE---------------------------------------------- 250 (621)
Q Consensus 230 -----------~--~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 250 (621)
. .-.+.-|......+.+....
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 0 00111122222333333221
Q ss_pred ----------------------------HHHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 251 ----------------------------KHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 251 ----------------------------k~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
|...|..++.... .....+++..|-+...+.+..+++-.|+.+..++|.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 1111111111100 00122333334556666677777778999999999999
Q ss_pred HHHHHHHHHHHhcCCc--e-EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccE--EEEEeccc
Q 007018 302 QDARKIHVSRFRARKT--M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSE 373 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~--~-ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~--~i~~v~~~ 373 (621)
..+|..+++.|++... . .|.+|-+.+.||++-+...||.||+.|+|..=.|.++|+-|.|++-. +|-|++..
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCC
Confidence 9999999999998543 3 45577889999999999999999999999999999999999999754 46666654
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=167.29 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=112.8
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCe
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLR 123 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~ 123 (621)
.|-.+|++.+..+=.+..+++.|||.+|||.+-.-.+ ++..+.+ ...-+|++.||.+|+.|+.. +..+|...+-.+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3888999999999999999999999999998654443 4444322 23458999999999999876 444443232233
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc--CCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCc
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~--~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q 201 (621)
...+.|.-. +..+.-.-+|+|+|+-|+.+-.++... ......++.++|+||.|.+..+.-.--+.+++... .|.
T Consensus 588 g~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP 663 (1330)
T KOG0949|consen 588 GVSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCP 663 (1330)
T ss_pred chhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCC
Confidence 333333222 222221337999999999998887652 12347889999999999987544333333444444 478
Q ss_pred EEEEEccCc--HHHHHHHH
Q 007018 202 TLLFSATLP--SALAEFAK 218 (621)
Q Consensus 202 ~ll~SATl~--~~l~~~~~ 218 (621)
++.+|||+. ..+..|.+
T Consensus 664 ~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecccCCHHHHHHHHH
Confidence 999999984 34445554
No 140
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.68 E-value=1e-15 Score=173.60 Aligned_cols=317 Identities=21% Similarity=0.294 Sum_probs=217.8
Q ss_pred CCChHHHHHHHHHHh----cCCcEEEEcCCCchHHH---HHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 44 KVPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 44 ~~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~---afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
..++.+|-..+..++ .+.++|+...+|-|||. +||--++..+.- .|+ .||++|...++.+ .++|
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~gp-flvvvplst~~~W----~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI----HGP-FLVVVPLSTITAW----EREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc----cCC-eEEEeehhhhHHH----HHHH
Confidence 579999999998876 46889999999999994 555444444332 354 7999998766554 4445
Q ss_pred hccCCCeEEEEEcCCChHHHHH---HHh-C-----CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHH
Q 007018 117 GRYTDLRISLLVGGDSMESQFE---ELA-Q-----NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (621)
Q Consensus 117 ~~~~~l~~~~~~gg~~~~~~~~---~l~-~-----~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~ 187 (621)
...+++++++++|.....+..+ ... . .++++++|++.++.-... +.--.+.+++|||||||-+. ..
T Consensus 440 ~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahrLkN~--~~ 514 (1373)
T KOG0384|consen 440 ETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHRLKND--ES 514 (1373)
T ss_pred HHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccCCcceeeecHHhhcCch--HH
Confidence 4455789999998765544332 222 2 378999999988754432 44446789999999998754 24
Q ss_pred HHHHHHHhcccCCcEEEEEccCc-HHHHHHHHhc-CCCCceeee---------------------------------ccC
Q 007018 188 QLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-LRDPHLVRL---------------------------------DVD 232 (621)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl~-~~l~~~~~~~-l~~p~~i~~---------------------------------~~~ 232 (621)
.+...+..+..+. .+|.|+|+- +++.++.... +-.|.-+.. +++
T Consensus 515 ~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 515 KLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 4555555555444 477788863 3444433211 011111100 111
Q ss_pred CCCCCCceEE-------------------------------------------------EEEcchhhHH----------H
Q 007018 233 TKISPDLKLA-------------------------------------------------FFTLRQEEKH----------A 253 (621)
Q Consensus 233 ~~~~~~~~~~-------------------------------------------------~~~~~~~~k~----------~ 253 (621)
...++..+.. |+.-..+++. .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 1111111111 1111111110 1
Q ss_pred HHHHHHH-------------HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC---c
Q 007018 254 ALLYMIR-------------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---T 317 (621)
Q Consensus 254 ~L~~~l~-------------~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~---~ 317 (621)
.|..+|. .....+++||||..-....+-|+++|...+++.-.|.|+...+-|...++.|..-. .
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 2222222 22245789999999999999999999999999999999999999999999998754 5
Q ss_pred eEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEeccccH
Q 007018 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (621)
Q Consensus 318 ~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~ 375 (621)
-.|+||.+.+-|||+-..|.||.||--|+|..=+|.-.||+|.|++- .+|-||+.+-+
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 68999999999999999999999999999999999999999999975 56889998644
No 141
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.67 E-value=1.6e-16 Score=131.00 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.5
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCC
Q 007018 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (621)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G 361 (621)
+.|+..++.+..+||++++.+|..+++.|++++..|||||+++++|+|+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 142
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=6.1e-15 Score=155.20 Aligned_cols=344 Identities=14% Similarity=0.074 Sum_probs=232.3
Q ss_pred HHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 39 ~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
..+.-.....+|.+++..+.+|+.+++.-.|.+||.+++.+.....+... .....+++.|+.+++....+...-...
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEEEEE
Confidence 33445567789999999999999999999999999999988877665432 234579999999998764332111110
Q ss_pred c-CCC--eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC---CCCcCCcceEEEeccccccCCC---hHHHH
Q 007018 119 Y-TDL--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMG---FAEQL 189 (621)
Q Consensus 119 ~-~~l--~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~---~~~l~~l~~vViDEah~l~~~g---f~~~l 189 (621)
. ..+ .++-.+.|.+..........+..++++.|......+.-.. ...+-...+++.||+|...... -..++
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 0 011 2333455666555555567789999999987654333211 1234556789999999876431 12233
Q ss_pred HHHHHh---c--ccCCcEEEEEccCcHHHHHHHHh-cCCCCceeeeccCCCCCCCceEEE-EEc--------chhhHHHH
Q 007018 190 HKILGQ---L--SENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAF-FTL--------RQEEKHAA 254 (621)
Q Consensus 190 ~~il~~---l--~~~~q~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~~~~~~-~~~--------~~~~k~~~ 254 (621)
..+++. + ..+.|++-.|||+...+.-.... ++.+-.++..+... ..-.+.+ +.. ..+.+...
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSP---s~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSP---SSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCC---CccceEEEeCCCCCCcchhhhhhHHHH
Confidence 333222 2 34678999999986655433332 34444455444321 1112111 111 11234444
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC----CC----CceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva 326 (621)
...++.+.+..+-++|-||.+++.|+.+....+.. +. .+....|+...++|..+....-.|+..-+|+|+++
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 45566666667889999999999999876665543 21 24456788889999999999889999999999999
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEec--cccHHHHHHHHHHhCCC
Q 007018 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSKP 388 (621)
Q Consensus 327 arGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~--~~e~~~l~~l~~~l~~~ 388 (621)
+-||||..+|.|+..++|.+...+.|..||+||.+++..++.++. |-|..|+......++.+
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 999999999999999999999999999999999998876655554 55666776666555543
No 143
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.63 E-value=3.6e-14 Score=160.64 Aligned_cols=343 Identities=19% Similarity=0.243 Sum_probs=224.9
Q ss_pred CCccCCCCCHHHHHHHHH-------C-------CCC-------CChHHHHHHHHHHh--c--CCcEEEEcCCCchHHHHH
Q 007018 23 GGFESLNLSPNVFRAIKR-------K-------GYK-------VPTPIQRKTMPLIL--S--GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~-------~-------g~~-------~ptpiQ~~aip~il--~--g~dvv~~a~TGSGKT~af 77 (621)
|-+.--|||++++....+ + .|. .++.+|++.+.++. . +=+.+++..+|-|||+-.
T Consensus 932 g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQt 1011 (1549)
T KOG0392|consen 932 GIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQT 1011 (1549)
T ss_pred CCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHH
Confidence 344445788888776332 1 133 35788999988763 2 347899999999999865
Q ss_pred HHHHHHH-HhhhC--C-CCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchH
Q 007018 78 LVPMLQR-LNQHV--P-QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGR 153 (621)
Q Consensus 78 llp~l~~-L~~~~--~-~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgr 153 (621)
+--+..- ..+.+ . -.....||+||+ .|+--|...+++|..+ +++...+|+.......+.--++.+|+|++++.
T Consensus 1012 icilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv 1088 (1549)
T KOG0392|consen 1012 ICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDV 1088 (1549)
T ss_pred HHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHH
Confidence 4333322 22211 1 123348999996 6777777777777755 78888888876666555555678999999998
Q ss_pred HHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC-cHHHHHHHHh---cC--------
Q 007018 154 LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL-PSALAEFAKA---GL-------- 221 (621)
Q Consensus 154 l~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl-~~~l~~~~~~---~l-------- 221 (621)
+..-... +.-..+.|+|+||-|-+-+. ...+......+..+.+ +.+|+|+ -+++.++... .|
T Consensus 1089 ~RnD~d~---l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEK 1162 (1549)
T KOG0392|consen 1089 VRNDVDY---LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEK 1162 (1549)
T ss_pred HHHHHHH---HHhcccceEEecCcceecch--HHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHH
Confidence 8643332 33456789999999988763 4566666666665554 6668885 1122221110 00
Q ss_pred ------CCCceeeecc---------------------------------CCCCCCCceE-EEEEcc--------------
Q 007018 222 ------RDPHLVRLDV---------------------------------DTKISPDLKL-AFFTLR-------------- 247 (621)
Q Consensus 222 ------~~p~~i~~~~---------------------------------~~~~~~~~~~-~~~~~~-------------- 247 (621)
..|..-.-+. -...++.+-+ +|+.+.
T Consensus 1163 qFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~ 1242 (1549)
T KOG0392|consen 1163 QFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKA 1242 (1549)
T ss_pred HHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHh
Confidence 0010000000 0000111111 111110
Q ss_pred -----------------------------------------------------------------hhhHHHHHHHHHHHh
Q 007018 248 -----------------------------------------------------------------QEEKHAALLYMIREH 262 (621)
Q Consensus 248 -----------------------------------------------------------------~~~k~~~L~~~l~~~ 262 (621)
...|..+|..+|.+.
T Consensus 1243 k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eC 1322 (1549)
T KOG0392|consen 1243 KQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSEC 1322 (1549)
T ss_pred ccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHh
Confidence 011455555555543
Q ss_pred c-c-------------CCCcEEEEecChhhHHHHHHHHHHC-CCC--ceeecCCCCHHHHHHHHHHHhcC-CceEEE-ec
Q 007018 263 I-S-------------SDQQTLIFVSTKHHVEFLNVLFREE-GLE--PSVCYGDMDQDARKIHVSRFRAR-KTMFLI-VT 323 (621)
Q Consensus 263 ~-~-------------~~~k~IVF~~t~~~ve~l~~~L~~~-g~~--~~~l~g~l~~~~R~~~l~~F~~g-~~~ILV-~T 323 (621)
- . .++++||||.-+...+.+..-|-+. -.+ ...+.|+.++.+|.++.++|+++ .++||+ +|
T Consensus 1323 Gig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTT 1402 (1549)
T KOG0392|consen 1323 GIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTT 1402 (1549)
T ss_pred CCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEee
Confidence 1 0 3578999999999999998877654 223 34788999999999999999999 577765 78
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccE--EEEEecccc
Q 007018 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSED 374 (621)
Q Consensus 324 dvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~--~i~~v~~~e 374 (621)
.|.+-|+|+.+.|.||+++--|+|..=+|..-||+|.|++-. +|-+++..-
T Consensus 1403 hVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1403 HVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred eccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999999999999999999999999999999999999999865 466666653
No 144
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.61 E-value=2.6e-14 Score=156.15 Aligned_cols=322 Identities=19% Similarity=0.294 Sum_probs=215.5
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
++-|+|.-.+.++. .+-..|+...+|-|||.- ++..+..|.+... .|+ -||+||+..|-. |+++|.++.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-~gp-HLVVvPsSTleN----WlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-PGP-HLVVVPSSTLEN----WLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-CCC-cEEEecchhHHH----HHHHHHHhC
Confidence 38899999998764 345679999999999954 3444455554322 344 699999987754 444555444
Q ss_pred -CCeEEEEEcCCChHHHHHHH-h---CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHh
Q 007018 121 -DLRISLLVGGDSMESQFEEL-A---QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (621)
Q Consensus 121 -~l~~~~~~gg~~~~~~~~~l-~---~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~ 195 (621)
.+++-.++|......+.+.. . ...+|+++|+.-+..--.....+.-.++.++|+||+|.|-+++ .++...++.
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~- 549 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS- 549 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc-
Confidence 68888889887665555433 2 2689999998644321111112334578899999999988765 334433332
Q ss_pred cccCCcEEEEEccCc-HHHHHHHH---------------------------------------------hcCCC------
Q 007018 196 LSENRQTLLFSATLP-SALAEFAK---------------------------------------------AGLRD------ 223 (621)
Q Consensus 196 l~~~~q~ll~SATl~-~~l~~~~~---------------------------------------------~~l~~------ 223 (621)
++ ....||+++|+- +.+.+++. ..++.
T Consensus 550 I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 550 IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 23 344577788751 11111110 00000
Q ss_pred --------C-ceeeec------------------------cCCCC--CCC---------------ceEEEEE--------
Q 007018 224 --------P-HLVRLD------------------------VDTKI--SPD---------------LKLAFFT-------- 245 (621)
Q Consensus 224 --------p-~~i~~~------------------------~~~~~--~~~---------------~~~~~~~-------- 245 (621)
| ..-++. ..... ... +...++.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 0 000000 00000 000 0000000
Q ss_pred ------------------------------------------------cchhhHHHHHHHHHHHhccCCCcEEEEecChh
Q 007018 246 ------------------------------------------------LRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (621)
Q Consensus 246 ------------------------------------------------~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~ 277 (621)
.....|...|..+|.+....+.++|||...-.
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 00112666777777777778899999999999
Q ss_pred hHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc--eEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhc
Q 007018 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT--MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVG 355 (621)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~--~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvG 355 (621)
..+-+...|...++....+.|...-..|..+++.|...+- -.|++|-+.+-|||+...++||.||.-.+|-.=.|.--
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 9999999999999999999999999999999999998762 46889999999999999999999999999999999999
Q ss_pred ccCCCCCc--cEEEEEeccccHH
Q 007018 356 RAARAGRT--GTAFSFVTSEDMA 376 (621)
Q Consensus 356 R~gR~G~~--G~~i~~v~~~e~~ 376 (621)
|++|.|+. -.+|-+++.+-++
T Consensus 869 RcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred HHHhhCCcceeEEEEEEecCcHH
Confidence 99999986 5778889887554
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=5e-15 Score=141.91 Aligned_cols=153 Identities=23% Similarity=0.239 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHhc-------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 45 VPTPIQRKTMPLILS-------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 45 ~ptpiQ~~aip~il~-------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.|+|+|.+++..+.. .+.+++.++||||||.+++..+.+... +++|++|+..|+.|+.+.+..+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhh
Confidence 489999999999884 688999999999999998865554432 79999999999999999886665
Q ss_pred ccCCCeEE-----------EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC----------CCCcCCcceEEEec
Q 007018 118 RYTDLRIS-----------LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE----------DMSLKSVEYVVFDE 176 (621)
Q Consensus 118 ~~~~l~~~-----------~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~----------~~~l~~l~~vViDE 176 (621)
........ ...................+++++|...+........ .......++||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 33211111 0111111122222335678999999999987765311 12345678999999
Q ss_pred cccccCCChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 177 ah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
||++.... ...+++. .....+|+||||++
T Consensus 155 aH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99965432 1444544 45677999999975
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.60 E-value=1.2e-12 Score=150.48 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHh----cCCceEEEecCcc
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDVA 326 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~----~g~~~ILV~Tdva 326 (621)
-...+...+...+..++.++||+++....+.++..|....-....++|.. .+..+++.|+ .++-.||++|...
T Consensus 519 ~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 519 HTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34556666665555666799999999999999999875322234455642 4566776666 4678899999999
Q ss_pred cccCCCCC--CCEEEEcCCCCC-hh-----------------------------HHHHHhcccCCCCCccEEEEEeccc
Q 007018 327 ARGIDIPL--LDNVINWDFPPK-PK-----------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 327 arGlDip~--v~~VI~~d~P~s-~~-----------------------------~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
..|||+|+ +.+||...+|.. |+ .+.|-+||.-|....--+++++.+.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 99999996 678988887731 11 1478899999976543345555543
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=6.4e-13 Score=151.29 Aligned_cols=125 Identities=23% Similarity=0.279 Sum_probs=106.4
Q ss_pred chhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc-eEEEecCc
Q 007018 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDV 325 (621)
Q Consensus 247 ~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~-~ILV~Tdv 325 (621)
...+|..+++..+.+....+.|+||-+.|....+.++.+|...|++..+++......+-..+-+ .|.. .|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh---cCCCCcEEEeccC
Confidence 3457889999999988889999999999999999999999999999999888755444443332 4543 59999999
Q ss_pred ccccCCCC--------CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 326 AARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 326 aarGlDip--------~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
|+||.||. +--+||....+.|...--|-.||+||.|.+|.+-.|++-+|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99999997 33589999999999999999999999999999999998754
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=9.9e-13 Score=149.47 Aligned_cols=320 Identities=21% Similarity=0.328 Sum_probs=224.9
Q ss_pred CCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCC
Q 007018 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTD 121 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~ 121 (621)
....|+|.+.++.+.+. .++++.||+|||||.++-++++. +..-.+++++.|.-+.+.-.+. |-++|+...|
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 34488999999988765 56999999999999998877664 3356689999999999887776 8888999999
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC---h--HHHHHHHHHhc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---F--AEQLHKILGQL 196 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g---f--~~~l~~il~~l 196 (621)
+.++.+.|..+.+.. +....+|+|+||+++-.+ . ....+++.|.||+|.+.+.. + .-.+.-|...+
T Consensus 1216 ~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~ 1286 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQL 1286 (1674)
T ss_pred ceEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHH
Confidence 999999998877654 344578999999987543 2 46788999999999887422 0 00155555666
Q ss_pred ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCC-ceEEEEEcchh-h----HHHHHHHHHHHhccCCCcEE
Q 007018 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD-LKLAFFTLRQE-E----KHAALLYMIREHISSDQQTL 270 (621)
Q Consensus 197 ~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~-~~~~~~~~~~~-~----k~~~L~~~l~~~~~~~~k~I 270 (621)
.+..+++.+|..+.+. .++ .++..-.++.+....++.|. +....+..... . -.......+..+...+.+.+
T Consensus 1287 ~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~ 1363 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAI 1363 (1674)
T ss_pred HhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeE
Confidence 6778899999887654 333 55555566666666666552 22222222211 1 12223445556666788999
Q ss_pred EEecChhhHHHHHHHHHH----------------------CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 271 IFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 271 VF~~t~~~ve~l~~~L~~----------------------~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
||+++++++.+++.-|-. ..+++.+-|-+|+..+...+-.-|..|.+.|+|...- ..
T Consensus 1364 vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~ 1442 (1674)
T KOG0951|consen 1364 VFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CY 1442 (1674)
T ss_pred EEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cc
Confidence 999999999876654432 1233444477888888888889999999999998755 66
Q ss_pred cCCCCCCCEEE-----EcC------CCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCC
Q 007018 329 GIDIPLLDNVI-----NWD------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (621)
Q Consensus 329 GlDip~v~~VI-----~~d------~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~ 389 (621)
|+-... +.|| .|| .+-......|.+|++.| .|.|+++.......|+.. |+-.++
T Consensus 1443 ~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk---fl~e~l 1507 (1674)
T KOG0951|consen 1443 GTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK---FLYEPL 1507 (1674)
T ss_pred cccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH---hccCcC
Confidence 766543 3344 233 23457888999999998 578888888777766544 554443
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=5.7e-13 Score=152.43 Aligned_cols=337 Identities=22% Similarity=0.194 Sum_probs=194.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhc--------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPLILS--------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~il~--------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
.+++.+..-..-..+|.+|+..+.. |-=+|-||-||+|||++=.-.|. .|. ....|.|..|-.-.|.|.
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLs--d~~~g~RfsiALGLRTLT 474 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALR--DDKQGARFAIALGLRSLT 474 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhC--CCCCCceEEEEcccccee
Confidence 3344333223456799999988764 22377799999999997553332 333 234688999999999999
Q ss_pred HHHHHHHHHhhccCCCeEEEEEcCCChHHHHH-------------------------------------------HHhC-
Q 007018 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFE-------------------------------------------ELAQ- 142 (621)
Q Consensus 107 ~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~-------------------------------------------~l~~- 142 (621)
.||-..+++-....+-..++++||....+-++ .+..
T Consensus 475 LQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~ 554 (1110)
T TIGR02562 475 LQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLD 554 (1110)
T ss_pred ccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccC
Confidence 99999988866666667788887743322221 0000
Q ss_pred -------CCCEEEECchHHHHhHhhcC--CCCcC--C--cceEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEcc
Q 007018 143 -------NPDIIIATPGRLMHHLSEVE--DMSLK--S--VEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSAT 208 (621)
Q Consensus 143 -------~~~IiV~Tpgrl~~~l~~~~--~~~l~--~--l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SAT 208 (621)
..+|+|||+..++-...... ...+. . -+.|||||+|..-... ...+..++..+ --+..++++|||
T Consensus 555 ~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSAT 633 (1110)
T TIGR02562 555 DKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSAT 633 (1110)
T ss_pred hhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 14699999998876552211 11111 1 2479999999854321 12233333321 135789999999
Q ss_pred CcHHHHH-HHHhcC----------CC---Cceeee---ccCC----------------------------CCCCCceEEE
Q 007018 209 LPSALAE-FAKAGL----------RD---PHLVRL---DVDT----------------------------KISPDLKLAF 243 (621)
Q Consensus 209 l~~~l~~-~~~~~l----------~~---p~~i~~---~~~~----------------------------~~~~~~~~~~ 243 (621)
+|+.+.. +..++. +. |..|.. |... ..+....-..
T Consensus 634 LP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i 713 (1110)
T TIGR02562 634 LPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAEL 713 (1110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEE
Confidence 9987665 233331 21 221211 1100 0011111122
Q ss_pred EEcchh-----hHHHHHHHHHHHhc-----------c-CCCc---EEEEecChhhHHHHHHHHHHC----C--CCceeec
Q 007018 244 FTLRQE-----EKHAALLYMIREHI-----------S-SDQQ---TLIFVSTKHHVEFLNVLFREE----G--LEPSVCY 297 (621)
Q Consensus 244 ~~~~~~-----~k~~~L~~~l~~~~-----------~-~~~k---~IVF~~t~~~ve~l~~~L~~~----g--~~~~~l~ 297 (621)
+.+... .....+...+.+.. . .+.+ .+|-++++..+-.++..|-.. + +.+.++|
T Consensus 714 ~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yH 793 (1110)
T TIGR02562 714 LSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYH 793 (1110)
T ss_pred eecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEec
Confidence 222221 12222322222111 1 2222 256666666666665555433 3 3356779
Q ss_pred CCCCHHHHHHHHHHH----------------------hc----CCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHH
Q 007018 298 GDMDQDARKIHVSRF----------------------RA----RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351 (621)
Q Consensus 298 g~l~~~~R~~~l~~F----------------------~~----g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~ 351 (621)
+......|..+.+.. .+ +...|+|+|++++.|+|+. .|++|-- |.+....+
T Consensus 794 Sr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~~--~~~~~sli 870 (1110)
T TIGR02562 794 AQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIAD--PSSMRSII 870 (1110)
T ss_pred ccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeeec--cCcHHHHH
Confidence 988666665443321 12 3568999999999999994 5666532 67789999
Q ss_pred HHhcccCCCCCc--cEEEEEeccccHHHH
Q 007018 352 HRVGRAARAGRT--GTAFSFVTSEDMAYL 378 (621)
Q Consensus 352 qrvGR~gR~G~~--G~~i~~v~~~e~~~l 378 (621)
||+||+.|.|.. +..-+++...++.++
T Consensus 871 Q~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 871 QLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred HHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 999999998763 344455556666666
No 150
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.51 E-value=5.4e-14 Score=116.00 Aligned_cols=81 Identities=38% Similarity=0.647 Sum_probs=77.2
Q ss_pred HHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCC
Q 007018 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (621)
Q Consensus 281 ~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~ 360 (621)
.++..|...++.+..+||++++.+|..++..|+.+...|||+|+++++|+|+|.+++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 007018 361 G 361 (621)
Q Consensus 361 G 361 (621)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 151
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=9.5e-12 Score=132.92 Aligned_cols=288 Identities=20% Similarity=0.200 Sum_probs=197.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhcc-------------CCCe------EEEEEcCCChHHHHHHH-hC---------
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRY-------------TDLR------ISLLVGGDSMESQFEEL-AQ--------- 142 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~-------------~~l~------~~~~~gg~~~~~~~~~l-~~--------- 142 (621)
..+++|||+|+|.-|..+.+.+-.+... .++. ...-......+.++..+ .+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4579999999999999998877665433 1100 00000011122222222 22
Q ss_pred ---------------CCCEEEECchHHHHhHhhc----CC-CCcCCcceEEEeccccccC--CChHHHHHHHHHhccc--
Q 007018 143 ---------------NPDIIIATPGRLMHHLSEV----ED-MSLKSVEYVVFDEADCLFG--MGFAEQLHKILGQLSE-- 198 (621)
Q Consensus 143 ---------------~~~IiV~Tpgrl~~~l~~~----~~-~~l~~l~~vViDEah~l~~--~gf~~~l~~il~~l~~-- 198 (621)
++|||||+|=-|...+... .. --|++++++|+|.||.++- |.+...+-..+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 3789999998887777631 11 2389999999999998774 3333333344444443
Q ss_pred -------------------CCcEEEEEccCcHHHHHHHHhcCCCCc-eeeecc--C-----CCCCCCceEEEEEcchh--
Q 007018 199 -------------------NRQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--D-----TKISPDLKLAFFTLRQE-- 249 (621)
Q Consensus 199 -------------------~~q~ll~SATl~~~l~~~~~~~l~~p~-~i~~~~--~-----~~~~~~~~~~~~~~~~~-- 249 (621)
-||+|++|+...+.+..+.+..+.|.. .+++.. . ......+.+.|..+...
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 269999999999999999988665532 222221 1 23445677777655432
Q ss_pred -----hHHHHHHHHHH-Hh--ccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 007018 250 -----EKHAALLYMIR-EH--ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (621)
Q Consensus 250 -----~k~~~L~~~l~-~~--~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (621)
.+.......+. .. -.....+|||+++.-.--.+..+|++.++....++-..++.+-.+.-..|.+|+..||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 23332222111 11 12457899999999999999999999999999999999999988999999999999999
Q ss_pred ecCcc--cccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCC------ccEEEEEeccccHHHHH
Q 007018 322 VTDVA--ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR------TGTAFSFVTSEDMAYLL 379 (621)
Q Consensus 322 ~Tdva--arGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~------~G~~i~~v~~~e~~~l~ 379 (621)
.|--+ =+=..|.++.+||.|.+|..|.-|...++-.+.... ...|.++++.-|.-.+.
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHH
Confidence 99643 355678899999999999999999888766555432 47888998887665443
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=9.9e-12 Score=143.28 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcc-CCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCCCHHHHHHHHHHHhcCCc-eEEEecCcccc
Q 007018 252 HAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAAR 328 (621)
Q Consensus 252 ~~~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~~~~R~~~l~~F~~g~~-~ILV~Tdvaar 328 (621)
...+...+...+. .++++|||+++....+.+.+.+...... ....+|. ..+...++.|..+.- .++|+|...++
T Consensus 464 ~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~gsf~E 540 (654)
T COG1199 464 LAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeeccccC
Confidence 3444444444332 3558999999999999999999886653 2333443 334478888988766 99999999999
Q ss_pred cCCCCC--CCEEEEcCCCC------------------------------ChhHHHHHhcccCCCCCccEEEEEecc
Q 007018 329 GIDIPL--LDNVINWDFPP------------------------------KPKIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 329 GlDip~--v~~VI~~d~P~------------------------------s~~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
|+|+|+ +.+||...+|. ....+.|.+||+-|.-..--+++++..
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999996 46788777763 233358999999996444334444444
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=2.6e-11 Score=140.40 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=60.5
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 42 GYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.|..++|.|.+.+..+. .|+++++.||||+|||++.|.|++..+.... ...++++++.|..=..|..+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 57777999998876654 5789999999999999999999998765421 2368999999999889988888875
No 154
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.35 E-value=5.1e-12 Score=141.54 Aligned_cols=320 Identities=18% Similarity=0.249 Sum_probs=204.3
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.+.++|.+.+.++.+ +-+.++...||-|||..- +.++..|.++....|+ -|||+|+..|..+..++-+.. .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQt-IsLitYLmE~K~~~GP-~LvivPlstL~NW~~Ef~kWa---P 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQT-ISLITYLMEHKQMQGP-FLIIVPLSTLVNWSSEFPKWA---P 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHH-HHHHHHHHHHcccCCC-eEEeccccccCCchhhccccc---c
Confidence 588999999987753 346889999999999774 4555567666655676 589999999988755533322 2
Q ss_pred CCeEEEEEcCCChHHHH--HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhccc
Q 007018 121 DLRISLLVGGDSMESQF--EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~--~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~ 198 (621)
.+......|......-+ ....+..+|+++|++.+.. ....+.--++.++||||.|+|.+.. ..+...+..--.
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYR 543 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchh--hHHHHHhhcccc
Confidence 34444444432222111 2234789999999987763 1122344567899999999987531 222222221111
Q ss_pred CCcEEEEEccC---------------------------------------------------------------------
Q 007018 199 NRQTLLFSATL--------------------------------------------------------------------- 209 (621)
Q Consensus 199 ~~q~ll~SATl--------------------------------------------------------------------- 209 (621)
....+|+++|+
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 22234444442
Q ss_pred ------cHHHHHHHHhcC-----------C-CCceeeecc--CCCCC----------------C----CceEEEE-----
Q 007018 210 ------PSALAEFAKAGL-----------R-DPHLVRLDV--DTKIS----------------P----DLKLAFF----- 244 (621)
Q Consensus 210 ------~~~l~~~~~~~l-----------~-~p~~i~~~~--~~~~~----------------~----~~~~~~~----- 244 (621)
|..++...+.-+ . .+.+ .++. ..... | ++...+.
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l-~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~ 702 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQL-LKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI 702 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCC-CcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh
Confidence 111111111000 0 0000 0000 00000 0 0000000
Q ss_pred --EcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCc---eE
Q 007018 245 --TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT---MF 319 (621)
Q Consensus 245 --~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~---~I 319 (621)
.++...|...|-.++-+....++.++.||.-.....-+..+|.-.++....+.|....++|-..+..|..-.. ..
T Consensus 703 ~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~F 782 (1157)
T KOG0386|consen 703 KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIF 782 (1157)
T ss_pred hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeee
Confidence 0111234455555555555679999999998888889999999899999999999999999999999988654 45
Q ss_pred EEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEE--EEEeccccH
Q 007018 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (621)
Q Consensus 320 LV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~--i~~v~~~e~ 375 (621)
|+.|...+.|+|+..+|.||.||.-|+|..+.|+--|+.|.|+.-.+ +.+++-..+
T Consensus 783 llstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 783 LLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred eeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 77999999999999999999999999999999999999999987554 444444433
No 155
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.34 E-value=1.2e-10 Score=121.77 Aligned_cols=126 Identities=14% Similarity=0.192 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhcc--CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC-CceEEEe-cCcc
Q 007018 251 KHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIV-TDVA 326 (621)
Q Consensus 251 k~~~L~~~l~~~~~--~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~ILV~-Tdva 326 (621)
|..+|.+-|..... ..-+.|||...-...+.+.-.|.+.|+.|+-+-|+|++.+|...++.|.+. .+.|+++ -.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 44555444433222 234678888888888888889999999999999999999999999999886 5666554 4777
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc--cEEEEEeccccHH
Q 007018 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDMA 376 (621)
Q Consensus 327 arGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~e~~ 376 (621)
+.-+|+.....|+..|+-|++..-.|.-.|..|.|+. -.++.|+.++.+.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE 752 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIE 752 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHH
Confidence 8889999999999999999999999999999998874 5778888876553
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.33 E-value=1.5e-10 Score=129.75 Aligned_cols=288 Identities=15% Similarity=0.196 Sum_probs=181.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~ 142 (621)
.++.||+|||||.+.+-++-+.+. ..+.++|+|+..+.|+.++...++..+- .++..-.-.++..+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 678999999999886655444433 2467899999999999998887776531 122211111111111 11
Q ss_pred CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChH------HHHHH-HHHhcccCCcEEEEEccCcHHHHH
Q 007018 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA------EQLHK-ILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 143 ~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~------~~l~~-il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
..+-++++.+.|.++. .-.+.++++||+||+..++..-|. .+... +...+.....+|++-||+.....+
T Consensus 121 ~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 3466777777675443 234678999999999877643222 12222 333445677899999999999999
Q ss_pred HHHhcCCCCceeeeccCCCCC--CCceEEEEE-c---------c-----------------------hhhHHHHHHHHHH
Q 007018 216 FAKAGLRDPHLVRLDVDTKIS--PDLKLAFFT-L---------R-----------------------QEEKHAALLYMIR 260 (621)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~--~~~~~~~~~-~---------~-----------------------~~~k~~~L~~~l~ 260 (621)
|....-.+..+..+..+.... ......+.. + . ...........|.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 998865544433332221110 011111100 0 0 0011233455555
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCC--CCEE
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL--LDNV 338 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~--v~~V 338 (621)
..+..+.++-||++|...++.++++.......+..++|.-+..+. +. =++.+|+|-|+++..|+++-. .+-|
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 566678999999999999999999999988888888876555522 22 256899999999999999864 3334
Q ss_pred EEcCCC----CChhHHHHHhcccCCCCCccEEEEEecc
Q 007018 339 INWDFP----PKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 339 I~~d~P----~s~~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
.-|=-| .+.....|.+||+-.-. ....++++.+
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~ 387 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDA 387 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEec
Confidence 444223 34556799999995543 4556666654
No 157
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.27 E-value=2.3e-09 Score=121.14 Aligned_cols=315 Identities=23% Similarity=0.283 Sum_probs=200.2
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (621)
|..+|. +-.+.-+..-++...||-|||++..+|+.-... .|..+.++...--||.--.+++..+-.+.|+.++
T Consensus 81 ~~dVQl--iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 81 HFDVQL--LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred hhhHHH--hhhhhhcCCceeeeecCCchHHHHHHHHHHHhc-----CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCcee
Confidence 555554 445555566888899999999999999754433 3667888999999999999999999999999999
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-----------C-----C
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-----------G-----M 183 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-----------~-----~ 183 (621)
+...+.+..+..... .+||..+|...| ++.+..+ ...-...+.+.|+||+|.++ . .
T Consensus 154 ~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~ 231 (822)
T COG0653 154 VILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSS 231 (822)
T ss_pred eccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCc
Confidence 999988766654443 589999999776 2333211 11124467889999999765 1 1
Q ss_pred ChHHHHHHHHHhcccCC--------cEEEEE-------------------------------------------------
Q 007018 184 GFAEQLHKILGQLSENR--------QTLLFS------------------------------------------------- 206 (621)
Q Consensus 184 gf~~~l~~il~~l~~~~--------q~ll~S------------------------------------------------- 206 (621)
.....+..+...+.... +.+.++
T Consensus 232 ~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ 311 (822)
T COG0653 232 ELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDG 311 (822)
T ss_pred hHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecC
Confidence 12334444443332111 111111
Q ss_pred ------------------------------------------------------------ccCcHHHHHHHHhcCCCCce
Q 007018 207 ------------------------------------------------------------ATLPSALAEFAKAGLRDPHL 226 (621)
Q Consensus 207 ------------------------------------------------------------ATl~~~l~~~~~~~l~~p~~ 226 (621)
+|.-.+..+|...+.-+ .
T Consensus 312 ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~--v 389 (822)
T COG0653 312 EVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLD--V 389 (822)
T ss_pred eEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCc--e
Confidence 11111111111111000 0
Q ss_pred eeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHH
Q 007018 227 VRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK 306 (621)
Q Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~ 306 (621)
+.+....+....-....+.....+|..+++..+......+.|+||-+.+....+.++..|.+.|++..++...-...+-.
T Consensus 390 v~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 390 VVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred eeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 00000000000000011112235688889998888888999999999999999999999999999998888775533333
Q ss_pred HHHHHHhcCCc-eEEEecCcccccCCCCCCC-----------EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 307 IHVSRFRARKT-MFLIVTDVAARGIDIPLLD-----------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 307 ~~l~~F~~g~~-~ILV~TdvaarGlDip~v~-----------~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
.+.. .|.. .|-|+|.+|+||-||.--. +||-..--.|-..=-|--||+||.|-+|.+-.|++-+|
T Consensus 470 Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3322 3443 5889999999999996333 35554444444444588999999999999888877643
No 158
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.23 E-value=5.8e-10 Score=120.80 Aligned_cols=124 Identities=20% Similarity=0.299 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce-EEEecCccccc
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-FLIVTDVAARG 329 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~-ILV~TdvaarG 329 (621)
|...|-.+|.+.-..++++|+|+.--+..+.+.++|.-.++....+.|+..-.+|...+.+|+..++- .|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 45555566666666789999999999999999999999999999999999999999999999997764 47799999999
Q ss_pred CCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEecccc
Q 007018 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (621)
Q Consensus 330 lDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e 374 (621)
||+...|.||+||--|+|..=.|...|+.|-|++- ++|-+++..-
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 99999999999999999999999999999999874 5666666543
No 159
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.21 E-value=2e-08 Score=118.84 Aligned_cols=298 Identities=20% Similarity=0.164 Sum_probs=163.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+..+++--||||||++.+..+- .|... ...+.+++|+-.++|-.|+.+.++.++....... ...+..+-.+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~-~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLAR-LLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHH-HHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 4699999999999988554433 33332 3567899999999999999999999875543322 334444444555
Q ss_pred hCC-CCEEEECchHHHHhHhhcCCCCcC-CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHH-H
Q 007018 141 AQN-PDIIIATPGRLMHHLSEVEDMSLK-SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF-A 217 (621)
Q Consensus 141 ~~~-~~IiV~Tpgrl~~~l~~~~~~~l~-~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~-~ 217 (621)
..+ ..|||+|-..|-..+.......+. +==+||+|||||.-.-.....+. ..++ +...++||+||--.-..- .
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~---~~~~-~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLLK---KALK-KAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHHH---HHhc-cceEEEeeCCccccccccch
Confidence 544 489999999988777653111122 22279999999954322233333 3333 477899999972111110 0
Q ss_pred HhcCCCCce-eeeccCCCCCCCceEEEEEc-ch-------h-------h----------------------------H--
Q 007018 218 KAGLRDPHL-VRLDVDTKISPDLKLAFFTL-RQ-------E-------E----------------------------K-- 251 (621)
Q Consensus 218 ~~~l~~p~~-i~~~~~~~~~~~~~~~~~~~-~~-------~-------~----------------------------k-- 251 (621)
....+++.. +.+...-.....+...|... .. . . +
T Consensus 423 ~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~ 502 (962)
T COG0610 423 KDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLI 502 (962)
T ss_pred hhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHH
Confidence 111111111 11111100001111111111 00 0 0 0
Q ss_pred --HHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCC----------c------eee-------cCCCCHHHHH
Q 007018 252 --HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE----------P------SVC-------YGDMDQDARK 306 (621)
Q Consensus 252 --~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~----------~------~~l-------~g~l~~~~R~ 306 (621)
...+..........+.++++.++++..+..+++........ + ... |... ...+.
T Consensus 503 ~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~ 581 (962)
T COG0610 503 RAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEKK 581 (962)
T ss_pred HHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHHh
Confidence 00011111111223556777777776333333332221000 0 000 1111 11122
Q ss_pred HHHHHH--hcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCC--C-C-ccEEEEEec
Q 007018 307 IHVSRF--RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--G-R-TGTAFSFVT 371 (621)
Q Consensus 307 ~~l~~F--~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~--G-~-~G~~i~~v~ 371 (621)
....+| .....++||++|+.-.|+|-|.+ +.+-.|-|...-..+|.+-|+.|. + + .|.++.|+.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L-~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCL-NTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCcccc-ceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 233342 34568999999999999999986 455688898888999999999995 3 2 366666666
No 160
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=7.9e-10 Score=116.79 Aligned_cols=335 Identities=20% Similarity=0.240 Sum_probs=212.5
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEc-CCCchH--HHHHHHHHHHHHhhhC------------C--------------CCC
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMA-RTGSGK--TAAFLVPMLQRLNQHV------------P--------------QGG 93 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a-~TGSGK--T~afllp~l~~L~~~~------------~--------------~~g 93 (621)
-..+|+.|.+.+..+.+.+|++.-- ..+.|+ +-.|++.++..+.+.. . -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 3479999999999999999987532 224555 5678888887763210 0 134
Q ss_pred eEEEEEcchHHHHHHHHHHHHHhhccCCCe-EE--------EEEcC--------CChHHHHHHH----------------
Q 007018 94 VRALILSPTRDLALQTLKFTKELGRYTDLR-IS--------LLVGG--------DSMESQFEEL---------------- 140 (621)
Q Consensus 94 ~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~-~~--------~~~gg--------~~~~~~~~~l---------------- 140 (621)
+++||+||+|+-|..+.+.+..+..+.+-. +. .-++| .+.++.++.+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 789999999999999998777764333210 00 01121 1111111111
Q ss_pred ---------hCCCCEEEECchHHHHhHhhcCC----C-CcCCcceEEEeccccccCCChHHHHHHHHHhc---cc-----
Q 007018 141 ---------AQNPDIIIATPGRLMHHLSEVED----M-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL---SE----- 198 (621)
Q Consensus 141 ---------~~~~~IiV~Tpgrl~~~l~~~~~----~-~l~~l~~vViDEah~l~~~gf~~~l~~il~~l---~~----- 198 (621)
-...||+||+|=-|.-++.+.+. + -+++++++|||-||.++..++ +.+..|+.++ |.
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccccCC
Confidence 12579999999877666653111 2 278999999999998875443 3344454444 32
Q ss_pred ----------------CCcEEEEEccCcHHHHHHHHhcCCCCce-eeecc--CC-CCC---CCceEEE--EEcch-----
Q 007018 199 ----------------NRQTLLFSATLPSALAEFAKAGLRDPHL-VRLDV--DT-KIS---PDLKLAF--FTLRQ----- 248 (621)
Q Consensus 199 ----------------~~q~ll~SATl~~~l~~~~~~~l~~p~~-i~~~~--~~-~~~---~~~~~~~--~~~~~----- 248 (621)
-+|+++||+-..+.+..+...++.|..- +.... .. .++ -.+.+.| +.+..
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~ 532 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETP 532 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCc
Confidence 1599999999888888877766654321 11110 00 000 0111111 11211
Q ss_pred hhHHHHHHHHH-HHhcc-CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc
Q 007018 249 EEKHAALLYMI-REHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (621)
Q Consensus 249 ~~k~~~L~~~l-~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva 326 (621)
+.+.......+ -...+ ....+||+.++.-.--++..++++..+....++...++..-.++-.-|-.|...+|+.|.-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 22333222221 11111 23468999999999999999999999888888877777766677788999999999999754
Q ss_pred --cccCCCCCCCEEEEcCCCCChhHHH---HHhcccCCCCC----ccEEEEEeccccHHHH
Q 007018 327 --ARGIDIPLLDNVINWDFPPKPKIFV---HRVGRAARAGR----TGTAFSFVTSEDMAYL 378 (621)
Q Consensus 327 --arGlDip~v~~VI~~d~P~s~~~~~---qrvGR~gR~G~----~G~~i~~v~~~e~~~l 378 (621)
-|-.+|.+|..||.|.+|..|.-|. ...+|+.-.|+ .-.|.++++.-|.-.+
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 4778999999999999999988774 45566654443 2366777776554433
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.20 E-value=8e-10 Score=131.53 Aligned_cols=126 Identities=21% Similarity=0.335 Sum_probs=109.0
Q ss_pred hHHHHHHHHH-HHhccCCC--cEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC--CceEEEecC
Q 007018 250 EKHAALLYMI-REHISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR--KTMFLIVTD 324 (621)
Q Consensus 250 ~k~~~L~~~l-~~~~~~~~--k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g--~~~ILV~Td 324 (621)
.|...+..++ ......+. +++||+......+-+...|...++....++|+++...|...++.|.++ ..-.+++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666777 56666777 999999999999999999999998899999999999999999999996 345666778
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEeccccH
Q 007018 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (621)
Q Consensus 325 vaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~ 375 (621)
+++.|+|+-..++||.||+.+++....|...|+.|.|++. .++-+++.+.+
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9999999999999999999999999999999999999875 45667776653
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.19 E-value=1.2e-10 Score=120.82 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=94.3
Q ss_pred HHHHHHHHHh-------------cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC-CCCeEEEEEcchHHHHHHHHHHHH
Q 007018 49 IQRKTMPLIL-------------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQTLKFTK 114 (621)
Q Consensus 49 iQ~~aip~il-------------~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~-~~g~~~LIL~PtreLa~Q~~~~~~ 114 (621)
+|.+++..++ ..+.++++..+|+|||...+..+. .+..... .....+|||||. .+..||...+.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 5777777663 236799999999999988665544 3333211 112359999999 77789888888
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHH-----HhHhhcCCCCcCCcceEEEeccccccCCChHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-----HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~-----~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l 189 (621)
++.....+++..+.|+..............+|+|+|++.+. ..... +..-++++||+||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 88765566666666655122222223457899999999998 22222 222348999999999985432 344
Q ss_pred HHHHHhcccCCcEEEEEccC
Q 007018 190 HKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl 209 (621)
...+..+. ....+++|||+
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccc-cceEEeecccc
Confidence 44444454 67789999997
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=3.1e-11 Score=108.95 Aligned_cols=139 Identities=22% Similarity=0.263 Sum_probs=81.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.|+--++...+|+|||--.+.-++..... .+.++|||.|||.++..+.+.++.. .+++..-.-+ .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~---~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM---R---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS--------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeee---c----
Confidence 35557889999999998766555544333 4778999999999999987777543 2322211110 0
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC--hHHHHHHHHHhcccCCcEEEEEccCcHHHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKILGQLSENRQTLLFSATLPSALAEF 216 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g--f~~~l~~il~~l~~~~q~ll~SATl~~~l~~~ 216 (621)
...++.-|-|+|.+.+.+.+.+ .....++++||+||||-.-... +.-.+... .. .....+|++|||+|-...+|
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~-~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AE-SGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HH-TTS-EEEEEESS-TT---SS
T ss_pred cccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHHhhheeHHHh-hh-ccCeeEEEEeCCCCCCCCCC
Confidence 1235567889999998888766 4567899999999999743221 11111111 11 12367999999998765433
No 164
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.18 E-value=4.8e-09 Score=118.85 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=102.7
Q ss_pred HHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC--ceEEEecCcccccC
Q 007018 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK--TMFLIVTDVAARGI 330 (621)
Q Consensus 253 ~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~--~~ILV~TdvaarGl 330 (621)
..|.-+|++....++++|||+.-....+-|..+|.-.|+....+.|...-++|...+++|+... ...|++|...+.||
T Consensus 1263 QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGi 1342 (1958)
T KOG0391|consen 1263 QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGI 1342 (1958)
T ss_pred HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccc
Confidence 3333334443346889999999999999999999999999999999999999999999999875 35677999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc--cEEEEEeccccHH
Q 007018 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDMA 376 (621)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~e~~ 376 (621)
|+-+.|.||+||--|++.-=.|.--|+.|.|+. -..|-|++..-+.
T Consensus 1343 NLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1343 NLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred ccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 999999999999999988777777777777765 4668888886543
No 165
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.16 E-value=1.3e-09 Score=118.58 Aligned_cols=123 Identities=15% Similarity=0.187 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc--CCceEEE-ecCcc
Q 007018 251 KHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLI-VTDVA 326 (621)
Q Consensus 251 k~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~--g~~~ILV-~Tdva 326 (621)
|...++..+...+ ..+.+++|...--....-+...+.+.|.....+||.....+|..+++.|.. |...|++ .-...
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 3444444444332 223344443333333455566777889999999999999999999999976 4455554 44678
Q ss_pred cccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEE--EEEeccc
Q 007018 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (621)
Q Consensus 327 arGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~--i~~v~~~ 373 (621)
+.|||+-+.+|+|..|+-|+|..--|..-|.-|.|++-.+ +-|++.+
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 8999999999999999999999999999999999997554 3344443
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.4e-09 Score=112.45 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCCCChHHHHHH----HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCC-CCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 42 GYKVPTPIQRKT----MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 42 g~~~ptpiQ~~a----ip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~-~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.|. |+|.|.+. +..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 454 79999994 45556789999999999999999999999877653221 2347999999999999987777665
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.09 E-value=1.4e-09 Score=112.45 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=58.8
Q ss_pred CCCCChHHHHHH----HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCC-CCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 42 GYKVPTPIQRKT----MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 42 g~~~ptpiQ~~a----ip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~-~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.|. |+|.|.+. +..+..|.++++.||||+|||++++.|++..+...... .+.+++|.++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 454 79999994 45556789999999999999999999999877653221 2347999999999999987777665
No 168
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.82 E-value=2.3e-07 Score=103.78 Aligned_cols=125 Identities=22% Similarity=0.317 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----------------------CCCCceeecCCCCHHHHHHH
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----------------------EGLEPSVCYGDMDQDARKIH 308 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----------------------~g~~~~~l~g~l~~~~R~~~ 308 (621)
|+-.|+++|+..-.-+.+.|||..+....+.+..+|.. .|.....|.|......|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 44456667766666789999999999999988888864 24556788999999999999
Q ss_pred HHHHhcCC----ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccE--EEEEeccccH
Q 007018 309 VSRFRARK----TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSEDM 375 (621)
Q Consensus 309 l~~F~~g~----~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~--~i~~v~~~e~ 375 (621)
...|+.-. .-.||+|.+.+-|||+-..+-||.||..|+|..=+|.+=|+-|.|+.-- +|-|+...-+
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTm 1279 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTM 1279 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccH
Confidence 99998732 2469999999999999999999999999999999999999999998654 4555555433
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.62 E-value=6.1e-07 Score=90.80 Aligned_cols=131 Identities=19% Similarity=0.277 Sum_probs=97.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+ .|++.|.-++=.+..|+ ++...||=|||++..+|+.-... .|..+=|++.+..||..=++++..+-...
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 566 49999999987776665 99999999999998888765544 37789999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHH-HhHhh----cCCC-CcCCcceEEEecccccc
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-HHLSE----VEDM-SLKSVEYVVFDEADCLF 181 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~-~~l~~----~~~~-~l~~l~~vViDEah~l~ 181 (621)
|+.++.+.++.+.++..... .++|+.+|.+.+. +.|.. .... ....+.++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999988765543333 3679999998774 33332 1111 25678899999999876
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.60 E-value=1.2e-06 Score=97.94 Aligned_cols=304 Identities=17% Similarity=0.200 Sum_probs=176.6
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeEEEEEcCCCh
Q 007018 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDSM 133 (621)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~~~~~gg~~~ 133 (621)
..+..++-+++.+.||.|||.-|.--+++.+...+...-..+.+--|+|--+.-+++ ++++-+...+-.|+.-+
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v----- 462 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV----- 462 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc-----
Confidence 334445668899999999999998888888887665545567888898887777766 33433322221111110
Q ss_pred HHHHHHH--hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhccc------------
Q 007018 134 ESQFEEL--AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE------------ 198 (621)
Q Consensus 134 ~~~~~~l--~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~------------ 198 (621)
.+... ...-.|..+|-|-++..+.. -+..+.++|+||.|...-.+ |...+.+=+.....
T Consensus 463 --Rf~Sa~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 463 --RFDSATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred --cccccccccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 01111 11235889999998887764 36678899999999754322 22221111111122
Q ss_pred ----------CCcEEEEEccCcHHHHHHHHhcCCCCc-eeeec-----------cCCCCCC------Cc----------e
Q 007018 199 ----------NRQTLLFSATLPSALAEFAKAGLRDPH-LVRLD-----------VDTKISP------DL----------K 240 (621)
Q Consensus 199 ----------~~q~ll~SATl~~~l~~~~~~~l~~p~-~i~~~-----------~~~~~~~------~~----------~ 240 (621)
-.++.++++|+|-. .|....+..+. .+.-. ......+ +. .
T Consensus 537 Td~f~~~f~~~p~~~~~grt~pvq--~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 537 TDLFTNFFSSIPDVTVHGRTFPVQ--SFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred hhhhhhhhccccceeeccccccHH--HHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 23445555555432 12111111110 00000 0000000 00 0
Q ss_pred EEEEEcchhhHHHHHHHHHHHhcc---CCCcEEEEecChhhHHHHHHHHHHC-------CCCceeecCCCCHHHHHHHHH
Q 007018 241 LAFFTLRQEEKHAALLYMIREHIS---SDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVS 310 (621)
Q Consensus 241 ~~~~~~~~~~k~~~L~~~l~~~~~---~~~k~IVF~~t~~~ve~l~~~L~~~-------g~~~~~l~g~l~~~~R~~~l~ 310 (621)
.........+....|.+.+...+. -.+-++||.+.....-.|...|... .+.+..+|+.+...+...+.+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~ 694 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFE 694 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccC
Confidence 000000001112223333332222 2466899999999888888777543 467788999888777777878
Q ss_pred HHhcCCceEEEecCcccccCCCCCCCEEEEcCCC------------------CChhHHHHHhcccCCCCCccEEEEEecc
Q 007018 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP------------------PKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 311 ~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P------------------~s~~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
....|..+++++|.++...+.|-++..||..+.- .+....+||.||+||. ++|.|..+.+.
T Consensus 695 ~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 695 PVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred cccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 7788999999999999999888877777643321 3455679999999996 67888777654
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.54 E-value=6.6e-07 Score=103.77 Aligned_cols=143 Identities=19% Similarity=0.299 Sum_probs=89.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHH-----H-hhc---cCCCeEEEEEcCC-
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-----E-LGR---YTDLRISLLVGGD- 131 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~-----~-l~~---~~~l~~~~~~gg~- 131 (621)
++.+..+||+|||.+|+-.|++..... .-.+.||+||+.+.-..+.+.++ . |.. ...+....+-++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~ 137 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDK 137 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcc
Confidence 688999999999999999988776553 23579999999999988887665 1 211 1124444444433
Q ss_pred ------ChHHHHHHHhC-------CCCEEEECchHHHHhHh-hc---------CCCCcCCc----ceEEEeccccccCCC
Q 007018 132 ------SMESQFEELAQ-------NPDIIIATPGRLMHHLS-EV---------EDMSLKSV----EYVVFDEADCLFGMG 184 (621)
Q Consensus 132 ------~~~~~~~~l~~-------~~~IiV~Tpgrl~~~l~-~~---------~~~~l~~l----~~vViDEah~l~~~g 184 (621)
.+..+...... +..|+|+|-+.|..-.. +. ...++..+ -+||+||.|++...+
T Consensus 138 ~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~ 217 (986)
T PRK15483 138 KKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN 217 (986)
T ss_pred cccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch
Confidence 22444443322 46899999998854211 00 00111112 279999999985422
Q ss_pred hHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 185 FAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 185 f~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
.....| ..+.+.+ ++.||||.+.
T Consensus 218 --k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 --KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred --HHHHHH-HhcCccc-EEEEeeecCC
Confidence 233344 5555444 6789999986
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.27 E-value=2.4e-05 Score=90.88 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=55.3
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
.....|+++||..|..-+.. +.+++..+..|||||||++.+..-..-+.++.+.-.+..-+..|||.+.
T Consensus 5 y~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34567999999988655544 4799999999999999999877666667777777777778999999974
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.25 E-value=3.4e-06 Score=83.67 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhh----hCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQ----HVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~----~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
++.+-|.+|+..++.... .++.||.|+|||.+.. -++..+.. .....+.++||++||..-+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999998 9999999999996533 34444411 1124578899999999999998886666
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.23 E-value=7.7e-05 Score=84.00 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=54.6
Q ss_pred CceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCC--CCccE-----------EEEEeccccHHHHHHHH
Q 007018 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--GRTGT-----------AFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 316 ~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~--G~~G~-----------~i~~v~~~e~~~l~~l~ 382 (621)
..+.|.+-.++-.|+|-|+|-.++-.....|...=.|-|||.-|- ...|. -.+++...+..++..++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 467899999999999999999999888888888899999999983 22232 23455556777777776
Q ss_pred HHhCC
Q 007018 383 LFLSK 387 (621)
Q Consensus 383 ~~l~~ 387 (621)
..+..
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 55443
No 175
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.16 E-value=1.1e-05 Score=78.53 Aligned_cols=124 Identities=22% Similarity=0.286 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
++++-|++++..++... -+++.|+.|+|||.+ +..+...+.. .|.++++++||...+..+.+.. ++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~-------~~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREKT-------GI 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHHH-------TS
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHhh-------Cc
Confidence 47899999999998654 377889999999975 4445555554 3688999999999888754431 11
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC---CCCcCCcceEEEeccccccCCChHHHHHHHHHhccc-
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~---~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~- 198 (621)
. ..|-.+++....... ...+...++||||||-.+. ...+..++...+.
T Consensus 69 ~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 E------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred c------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 1 122222221111100 0115566799999998754 3567777777766
Q ss_pred CCcEEEEEcc
Q 007018 199 NRQTLLFSAT 208 (621)
Q Consensus 199 ~~q~ll~SAT 208 (621)
+.+++++-=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 5555555443
No 176
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.09 E-value=0.00046 Score=79.04 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
.+.+.|..|+..++.. ..+++.||+|+|||.+..-.+.+.+. .|.++|+++||..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5799999999999887 56889999999999765443333332 366899999999999998876655
No 177
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.07 E-value=8.5e-06 Score=79.33 Aligned_cols=139 Identities=23% Similarity=0.325 Sum_probs=77.8
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC-
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL- 122 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l- 122 (621)
.-.|+.|..++..++...-+++.||.|||||+..+..+++.+... .-.+++|.-|..+... .++-..|-
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~~~-------~lGflpG~~ 72 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEAGE-------DLGFLPGDL 72 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--TT-----------SS----
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCCcc-------ccccCCCCH
Confidence 346889999999999888899999999999999999999888763 3457888888765311 11100000
Q ss_pred --eEE-----------EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHH
Q 007018 123 --RIS-----------LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (621)
Q Consensus 123 --~~~-----------~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l 189 (621)
+.. .+.+... .+.+.....|-+.++..+. ...+++ .+||+|||..+. ..++
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iR-------Grt~~~-~~iIvDEaQN~t----~~~~ 136 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEK----LEELIQNGKIEIEPLAFIR-------GRTFDN-AFIIVDEAQNLT----PEEL 136 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGT-------T--B-S-EEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHh----HHHHhhcCeEEEEehhhhc-------Cccccc-eEEEEecccCCC----HHHH
Confidence 000 0001111 2223334567676655432 333443 799999999853 5688
Q ss_pred HHHHHhcccCCcEEEEEcc
Q 007018 190 HKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 190 ~~il~~l~~~~q~ll~SAT 208 (621)
..++.++..+++++++.-.
T Consensus 137 k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHTTB-TT-EEEEEE--
T ss_pred HHHHcccCCCcEEEEecCc
Confidence 9999999998887776544
No 178
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.02 E-value=3.8e-06 Score=95.90 Aligned_cols=133 Identities=20% Similarity=0.269 Sum_probs=98.0
Q ss_pred CChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCe
Q 007018 45 VPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (621)
Q Consensus 45 ~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (621)
...|+|.+.+..+. -..++++.+|||||||.+|-+.++..+... .+.+++++.|-.+|+....+.....-...|++
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g~k 1003 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPGIK 1003 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCCce
Confidence 34456666654433 246799999999999999999988777654 46789999999999988776443332233888
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC-CCcCCcceEEEeccccccCC
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGM 183 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~-~~l~~l~~vViDEah~l~~~ 183 (621)
+.-+.|....+- .. -..++|+|+||++...+...+.. -.+.++..+|+||.|.+.+.
T Consensus 1004 ~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1004 VIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 888888766552 12 24689999999999887774333 23788999999999987653
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.98 E-value=0.00028 Score=78.34 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=87.5
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCC------------------ceeecCCCCHHHHHHHHHHHhcCC---ceEEEecC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREEGLE------------------PSVCYGDMDQDARKIHVSRFRARK---TMFLIVTD 324 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~------------------~~~l~g~l~~~~R~~~l~~F~~g~---~~ILV~Td 324 (621)
+.++|||.......+.+.++|.+..+. ..-+.|..+...|+..+.+|..-- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 568899999999999999999875332 224667788889999999997632 35788999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEE--EEEecccc
Q 007018 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (621)
Q Consensus 325 vaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~--i~~v~~~e 374 (621)
...-|||+=...-+|.+|..+++..=.|.+-|+-|.|+.-.| |-++...-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~ 850 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNS 850 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhh
Confidence 999999998888888899999999999999999999987555 55555543
No 180
>PRK10536 hypothetical protein; Provisional
Probab=97.94 E-value=0.00013 Score=73.16 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=84.6
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH-----------HHH
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA-----------LQT 109 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa-----------~Q~ 109 (621)
.++.-.+..|...+..+..+.-+++.|++|+|||+..+...++.+... .-.+++|.-|+.+.. +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 455667889999999998888899999999999998888777766442 233566666654321 111
Q ss_pred HHHHHHhhccCCCeEEEEEcCCChHHHHHHH--hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHH
Q 007018 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL--AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (621)
Q Consensus 110 ~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l--~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~ 187 (621)
.-++.-+...... +.|.. ....+ .....|-|.....+ . ..++.+ ++||+|||+.+. ..
T Consensus 132 ~p~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l~ym----R---Grtl~~-~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPFAYM----R---GRTFEN-AVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecHHHh----c---CCcccC-CEEEEechhcCC----HH
Confidence 1111111110000 01111 11211 12234555543322 2 333433 799999999864 36
Q ss_pred HHHHHHHhcccCCcEEEE
Q 007018 188 QLHKILGQLSENRQTLLF 205 (621)
Q Consensus 188 ~l~~il~~l~~~~q~ll~ 205 (621)
++..++.+++.+.++++.
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 888999999988876653
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.87 E-value=0.00039 Score=76.31 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.+..-|+..+..-|..|+..+|...=.++.||+|+|||.+..-.+.+.... .+..+|+.+|+..-+.|+++.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHhc
Confidence 334457778899999999999999999999999999998765555544443 3556999999999999988877765
Q ss_pred hccCCCeEEEEEc
Q 007018 117 GRYTDLRISLLVG 129 (621)
Q Consensus 117 ~~~~~l~~~~~~g 129 (621)
+ +++..+..
T Consensus 478 g----LKVvRl~a 486 (935)
T KOG1802|consen 478 G----LKVVRLCA 486 (935)
T ss_pred C----ceEeeeeh
Confidence 4 76666653
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.86 E-value=4.5e-05 Score=72.38 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCC--CceeecCCCCHHHHHHHHHHHhcCCceEEEecC--cccccCCCCC--CCEE
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNV 338 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~--~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td--vaarGlDip~--v~~V 338 (621)
.++.+|||+++....+.+...+..... ...++.- +...+...++.|+.++-.||+++. ..+.|+|+|+ ++.|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 368899999999999999999876532 1122222 244667789999999999999998 8999999996 7789
Q ss_pred EEcCCCC----Chh--------------------------HHHHHhcccCCCCCccEEEEEecc
Q 007018 339 INWDFPP----KPK--------------------------IFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 339 I~~d~P~----s~~--------------------------~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
|...+|. ++. ...|.+||+-|....--+++++.+
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888873 111 137899999997665344444444
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.83 E-value=5.7e-05 Score=80.56 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=67.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~ 142 (621)
+++.|..|||||+..+-.+. .+. ....+..++++++...|...+.+.+..-. . ..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~-~l~--~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~~ 58 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAK-ELQ--NSEEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------PK 58 (352)
T ss_pred EEEEecCCcCHHHHHHHHHH-Hhh--ccccCCceEEEEecchHHHHHHHHHhhhc----------c------------cc
Confidence 78999999999987664433 331 12347789999999999888776664432 0 00
Q ss_pred CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-------ChHHHHHHHHHh
Q 007018 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------GFAEQLHKILGQ 195 (621)
Q Consensus 143 ~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-------gf~~~l~~il~~ 195 (621)
.....+..+..+...+.. .......+++|||||||++... ....++..++..
T Consensus 59 ~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 LKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 111233344444333221 1345678999999999999872 234667777665
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.80 E-value=0.00011 Score=74.87 Aligned_cols=174 Identities=17% Similarity=0.160 Sum_probs=108.2
Q ss_pred cCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc----------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeE
Q 007018 26 ESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (621)
Q Consensus 26 ~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~----------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~ 95 (621)
-.+.|++.++.. | .++..|-+++-...+ +..+++-..||.||--...-.+++.+... ..+
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r 93 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKR 93 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCc
Confidence 334566544432 3 368888888755531 34688889999999876666677776652 447
Q ss_pred EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcC--CCC--------
Q 007018 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE--DMS-------- 165 (621)
Q Consensus 96 ~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~--~~~-------- 165 (621)
+|+++.+..|-......++.++.. .+.+..+..-.. . ....-.-.|+++|+..|...-.... ...
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~-~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~ 168 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY-G---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWC 168 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc-C---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHH
Confidence 999999999999988888888744 333332222100 0 0011244699999988776542100 011
Q ss_pred -cCCcceEEEeccccccCCCh--------HHHHHHHHHhcccCCcEEEEEccCcHHHHH
Q 007018 166 -LKSVEYVVFDEADCLFGMGF--------AEQLHKILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 166 -l~~l~~vViDEah~l~~~gf--------~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
-+.=.+|||||||..-+..- .....++-..+|..+ ++..|||-..+..+
T Consensus 169 g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR-vvY~SATgasep~N 226 (303)
T PF13872_consen 169 GEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR-VVYASATGASEPRN 226 (303)
T ss_pred hcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc-EEEecccccCCCce
Confidence 12234899999999876532 234445556676554 99999996544433
No 185
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.76 E-value=0.00039 Score=80.82 Aligned_cols=129 Identities=17% Similarity=0.150 Sum_probs=81.3
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.++ .+++.|++|+..+..++-+++.|..|+|||.+. -.+++.+... .....+++++||-.-|..+.+..
T Consensus 320 ~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 320 LRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred cCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHHhc-------
Confidence 565 599999999999998889999999999999753 3444444431 01157889999988776543321
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc----CCCCcCCcceEEEeccccccCCChHHHHHHHHHhc
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~----~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l 196 (621)
+... .|-.+++...... ..-.....++||+|||+.+.. ..+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 2111 1111111110000 001123568999999998743 4567777788
Q ss_pred ccCCcEEEEEcc
Q 007018 197 SENRQTLLFSAT 208 (621)
Q Consensus 197 ~~~~q~ll~SAT 208 (621)
+.+.+++++.=+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 888887776544
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=97.72 E-value=0.00014 Score=59.30 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=42.2
Q ss_pred HHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH
Q 007018 53 TMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (621)
Q Consensus 53 aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~ 113 (621)
++...+.+.+ +++.|+.|||||...+-.+.+.+...... +.++|+++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443344444 55699999999977665555555332233 778999999999999887766
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.69 E-value=0.00036 Score=79.18 Aligned_cols=144 Identities=17% Similarity=0.151 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (621)
..+.|+.|+-..+.++-+++.|++|+|||.+.. -++..+.........++++..||..-|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 358999999999999999999999999997633 33333332211234679999999998888777665433222110
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc-----CCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~-----~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
+. .......-..|-.+++...... .....-.+++||||||-.+. ...+..++..+++.+
T Consensus 230 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 --------DE----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred --------hh----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 00 0001111123333333221100 01122346899999997642 467778888899988
Q ss_pred cEEEEEcc
Q 007018 201 QTLLFSAT 208 (621)
Q Consensus 201 q~ll~SAT 208 (621)
++|+..=.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88776544
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.65 E-value=0.00074 Score=66.52 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=98.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc---CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~---g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
.+|.-+.-+.+++=.+.. ++ ..+|.|.+....+.+ |++.+...-+|.|||.+ ++|++..+... ...-+.++
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVI 76 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEE
Confidence 357777777887776653 44 489999999988875 57899999999999987 66777766542 23456677
Q ss_pred cchHHHHHHHHHHHHH-hhccCCCeEEEEEcC--CCh--------HHHHHHHhCCCCEEEECchHHHHhHhhc------C
Q 007018 100 SPTRDLALQTLKFTKE-LGRYTDLRISLLVGG--DSM--------ESQFEELAQNPDIIIATPGRLMHHLSEV------E 162 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~-l~~~~~l~~~~~~gg--~~~--------~~~~~~l~~~~~IiV~Tpgrl~~~l~~~------~ 162 (621)
+|. .|..|+...+.. ++...+-++..+-=. ... ...++.......|+++||+.++...... .
T Consensus 77 Vpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 774 689999986654 655445444433322 111 1112233456779999999876433210 0
Q ss_pred CCC-----------cCCcceEEEeccccccC
Q 007018 163 DMS-----------LKSVEYVVFDEADCLFG 182 (621)
Q Consensus 163 ~~~-----------l~~l~~vViDEah~l~~ 182 (621)
... +....-=|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 000 22334468899988765
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.61 E-value=0.00076 Score=76.37 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCC-CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEE
Q 007018 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (621)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~-~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (621)
.+.|+.|+..++.++-+++.|+.|+|||.+.. .++..+...... .+.++++.+||-.-|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37999999999999999999999999997632 333333322111 13579999999988887776655432211110
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhc-----CCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~-----~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
.. ......+-..|-.+++...... ..-....+++||||||-.+. ...+..++..++...
T Consensus 224 --------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 00 0001111233433333221100 01123357899999996543 356777888888888
Q ss_pred cEEEEEc
Q 007018 201 QTLLFSA 207 (621)
Q Consensus 201 q~ll~SA 207 (621)
++|++.=
T Consensus 288 rlIlvGD 294 (586)
T TIGR01447 288 KLILLGD 294 (586)
T ss_pred EEEEECC
Confidence 8776543
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.56 E-value=0.00018 Score=78.65 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
.+.+-|..|+...+..++ .++.||+|+|||.+....+.+.++. +.++||..||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHH
Confidence 467889999999888866 6789999999998866555555543 67999999999988888774
No 191
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.50 E-value=0.00075 Score=76.98 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=86.4
Q ss_pred cEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC-ceE-EEecCcccccCCCCCCCEEEEcCCCC
Q 007018 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPP 345 (621)
Q Consensus 268 k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~-~~I-LV~TdvaarGlDip~v~~VI~~d~P~ 345 (621)
++|||+.-..-+..+...|...++....+.|.|....|...+..|..+. ..| |++.-+...|+++-...+|+..|+=+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8889988888888888888888888888999999999999999998543 333 45778899999999999999999999
Q ss_pred ChhHHHHHhcccCCCCCccEEE
Q 007018 346 KPKIFVHRVGRAARAGRTGTAF 367 (621)
Q Consensus 346 s~~~~~qrvGR~gR~G~~G~~i 367 (621)
+|..--|.+-|+.|.|+.-.+.
T Consensus 621 np~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred ChHHHHHHHHHHHHhcccceee
Confidence 9999999999999999875443
No 192
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.47 E-value=0.0018 Score=76.97 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=79.6
Q ss_pred HCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 40 RKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
..|+ .+++-|++|+..++.+++ +++.|..|+|||.+ +-.+.+.+.. .|.+++.++||---|..+.+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHhh-------
Confidence 3565 599999999999998765 67899999999986 4455554443 47889999999876654322
Q ss_pred cCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc-c
Q 007018 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-S 197 (621)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l-~ 197 (621)
..++.. .|-.+++.-... ....+...++||||||-.+.. ..+..++... +
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAAD 459 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCH----HHHHHHHHhhhh
Confidence 122211 121222211111 122356678999999986543 3455555543 4
Q ss_pred cCCcEEEEEcc
Q 007018 198 ENRQTLLFSAT 208 (621)
Q Consensus 198 ~~~q~ll~SAT 208 (621)
.+.++||+.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 56666666544
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.38 E-value=0.001 Score=75.51 Aligned_cols=134 Identities=25% Similarity=0.344 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHhc----CCcEEEEcCCCchHHHHHHHHHHHH---Hhhh---------C-------C-----------
Q 007018 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQR---LNQH---------V-------P----------- 90 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----g~dvv~~a~TGSGKT~afllp~l~~---L~~~---------~-------~----------- 90 (621)
+|+|.|..-+..++. ..+.++..|||+|||++.|--.+.. +... . +
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 589999988877664 5789999999999998766554433 2200 0 0
Q ss_pred -C------CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCC--------------------------------
Q 007018 91 -Q------GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-------------------------------- 131 (621)
Q Consensus 91 -~------~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~-------------------------------- 131 (621)
. .-+++.+-+-|..-..|+.+.+++.+.. ++.+++-+-+
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 1246677777887778887777776533 2222221100
Q ss_pred ------------------ChHHH--------------HHHHhCCCCEEEECchHHHHhHhhcC-CCCcCCcceEEEeccc
Q 007018 132 ------------------SMESQ--------------FEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEAD 178 (621)
Q Consensus 132 ------------------~~~~~--------------~~~l~~~~~IiV~Tpgrl~~~l~~~~-~~~l~~l~~vViDEah 178 (621)
+.++. -+.+...+|||+|.+..|++-..+.. .+++++ .+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 00000 04556678999999999987665421 244443 489999999
Q ss_pred ccc
Q 007018 179 CLF 181 (621)
Q Consensus 179 ~l~ 181 (621)
.+-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 875
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.36 E-value=0.0033 Score=73.48 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+++..+......++ .+++-|+.|+..++.+ +-+++.|+.|+|||.. +-.+.+.+.. .|.++++++||---|..
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 44544444433455 4899999999999875 5578999999999975 3344444443 37789999999876655
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHH
Q 007018 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (621)
Q Consensus 109 ~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~ 188 (621)
+.+ .+++... |-.+++..... ....+...++||||||-.+.. ..
T Consensus 412 L~~-------~~g~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~----~~ 455 (744)
T TIGR02768 412 LQA-------ESGIESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGS----RQ 455 (744)
T ss_pred HHh-------ccCCcee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCH----HH
Confidence 432 1222211 11111111111 122356788999999987643 33
Q ss_pred HHHHHHhc-ccCCcEEEEE
Q 007018 189 LHKILGQL-SENRQTLLFS 206 (621)
Q Consensus 189 l~~il~~l-~~~~q~ll~S 206 (621)
+..++... ..+.++||..
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 44455532 3456665554
No 195
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0049 Score=65.68 Aligned_cols=130 Identities=21% Similarity=0.247 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCC-eEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g-~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
|..++++||||+|||......+...+.. .| .++.++. +...-.--.+.++.+++..++.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~----~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------------ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR----FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------------ 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEe------------
Confidence 4568899999999998766444433322 12 2343333 2222111122344444444443332
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCcH-HHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEF 216 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~-~l~~~ 216 (621)
+.+++.+...+.+ +.+.++|+||++-+... ....+++..+.........++++|||... .+.+.
T Consensus 200 ---------~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev 265 (374)
T PRK14722 200 ---------VKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV 265 (374)
T ss_pred ---------cCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH
Confidence 3344444333332 34568899999865432 11233333332222333457888999743 33444
Q ss_pred HHhc
Q 007018 217 AKAG 220 (621)
Q Consensus 217 ~~~~ 220 (621)
++.+
T Consensus 266 i~~f 269 (374)
T PRK14722 266 VQAY 269 (374)
T ss_pred HHHH
Confidence 4444
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.20 E-value=0.023 Score=72.89 Aligned_cols=210 Identities=13% Similarity=0.158 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
.+++-|++++..++.. +=.++.|+.|+|||.+ +-.+++.+.. .|.++++++||-.-+..+.+.....+
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~g~~A----- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE----QGYEIQIITAGSLSAQELRQKIPRLA----- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHhcchh-----
Confidence 4899999999999876 4488899999999975 4444444433 47899999999887666544322111
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc-ccCCc
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q 201 (621)
.....+...+.. + .-..|-..|+ . ...++..-++||||||-.+. ...+..++... +.+.+
T Consensus 499 --------~Ti~~~l~~l~~-~-~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 499 --------STFITWVKNLFN-D-DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSK 559 (1960)
T ss_pred --------hhHHHHHHhhcc-c-ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCE
Confidence 011111111111 1 1112222332 1 23456678899999998654 34666666655 46788
Q ss_pred EEEEEccC-------cHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEec
Q 007018 202 TLLFSATL-------PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVS 274 (621)
Q Consensus 202 ~ll~SATl-------~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~ 274 (621)
+||+.=+- ...+..+...++. .+++..-......+ .+.......+...+...+.........++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~gv~---t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGGVT---TYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCCCc---EEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 88776552 2344444444432 22332211111112 222223344555566655555445556999999
Q ss_pred ChhhHHHHHHHHHH
Q 007018 275 TKHHVEFLNVLFRE 288 (621)
Q Consensus 275 t~~~ve~l~~~L~~ 288 (621)
+......|....+.
T Consensus 635 t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 635 THREQQDLTQIIRN 648 (1960)
T ss_pred CcHHHHHHHHHHHH
Confidence 98888777666654
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.20 E-value=0.0015 Score=58.64 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
++-+++.|++|+|||.+.-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998644
No 198
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.19 E-value=0.0047 Score=73.94 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 29 ~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
++++..+......++ .+++-|+.++..+.. ++-+++.|..|+|||.+ +-++.+.+.. .|.+++.+.||---|.
T Consensus 366 ~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 566777766666665 499999999998865 35588999999999975 4445555443 4788999999977665
Q ss_pred HHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHH
Q 007018 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (621)
Q Consensus 108 Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~ 187 (621)
.+.+ ..++....+ .+++..... ....+..-++||||||-.+. ..
T Consensus 440 ~L~e-------~~Gi~a~TI------------------------as~ll~~~~-~~~~l~~~~vlVIDEAsMv~----~~ 483 (1102)
T PRK13826 440 GLEK-------EAGIQSRTL------------------------SSWELRWNQ-GRDQLDNKTVFVLDEAGMVA----SR 483 (1102)
T ss_pred HHHH-------hhCCCeeeH------------------------HHHHhhhcc-CccCCCCCcEEEEECcccCC----HH
Confidence 5322 223322211 111111101 12345667799999998654 34
Q ss_pred HHHHHHHhcc-cCCcEEEEEcc
Q 007018 188 QLHKILGQLS-ENRQTLLFSAT 208 (621)
Q Consensus 188 ~l~~il~~l~-~~~q~ll~SAT 208 (621)
++..++...+ .+.++||+.=+
T Consensus 484 ~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 484 QMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHhcCCEEEEECCH
Confidence 5556666664 46677766544
No 199
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.13 E-value=0.0011 Score=68.83 Aligned_cols=124 Identities=21% Similarity=0.150 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (621)
+|+.|.+++.. ....+++.|..|||||.+.+--+...|.... ....++|+|++|+..|..+...+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc--
Confidence 58899999987 6778999999999999987776666555432 234579999999999999988777753221100
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccc
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEAD 178 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah 178 (621)
................+.|+|-..+...+.+.... .--.-.+-++|+..
T Consensus 76 ----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00000111112234567888887765543321111 11123456667665
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.013 Score=62.98 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=71.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc-c-hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~-P-treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
+.+++.||||+|||.+..-.+. .+.......|.++.++. - .|.-+.+ +++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~-~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA-IYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------------
Confidence 4588999999999987654433 22211111234444333 3 3343333 355555544554321
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcccC-CcEEEEEccCc-HHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLP-SALAE 215 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~~-~q~ll~SATl~-~~l~~ 215 (621)
+.++..+...+.. +.++++||||++.++.... ....+..++...... ...+.+|||.. ..+.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 1233444444432 3578999999999876321 234566666655433 45688999975 34444
Q ss_pred HHHhc
Q 007018 216 FAKAG 220 (621)
Q Consensus 216 ~~~~~ 220 (621)
.+..+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 44444
No 201
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.0016 Score=63.22 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=59.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch---HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
.=.++.|++|+|||...+-. +.++.. .+.+++|+-|. +....+ +....++....
T Consensus 3 ~i~litG~~GsGKTT~~l~~-~~~~~~----~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~----------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQR-AYNYEE----RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA----------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHHHHH-HHHHHH----cCCeEEEEeccccccccCCc-------EecCCCCcccc-----------
Confidence 34688999999999765533 334333 36788888773 322111 11111211100
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
+.+..+..+++.+.. .-.++++|||||+|.+. .+++.+++..+.+.-.++++++-
T Consensus 60 --------~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 --------IPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------eEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344445554433 23467899999997642 24466677774444445555554
No 202
>PRK06526 transposase; Provisional
Probab=97.03 E-value=0.0029 Score=64.17 Aligned_cols=112 Identities=14% Similarity=0.110 Sum_probs=62.0
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChH
Q 007018 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (621)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~ 134 (621)
..+..+.++++.||+|+|||........+.+. .|.++++... .+|..++... . ..
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~t~-~~l~~~l~~~----~----------~~----- 147 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFATA-AQWVARLAAA----H----------HA----- 147 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhhhH-HHHHHHHHHH----H----------hc-----
Confidence 34456789999999999999765544333332 3556655433 2343332110 0 00
Q ss_pred HHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcccCCcEEEEEccCcHHH
Q 007018 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSAL 213 (621)
Q Consensus 135 ~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~~~q~ll~SATl~~~l 213 (621)
++.... +. .+.++++|||||+|.+.... -...+..++...-....+|+.|...+...
T Consensus 148 --------------~~~~~~---l~-----~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 148 --------------GRLQAE---LV-----KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred --------------CcHHHH---HH-----HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 111111 21 13457899999999764322 23345566654433456777777766543
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=96.97 E-value=0.01 Score=62.51 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=75.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch---HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
-+++.|++|+|||.+....+ ..+.. .|.+++++... ..-..|+......+ ++.+.....|......
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp~~v-- 210 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADPAAV-- 210 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCHHHH--
Confidence 47789999999998654333 33433 35566666543 34445554444443 3443322222111110
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (621)
+.+.+.. ......++|++|.+.++. +..+...+..+...+.+..-++.++||......+.+
T Consensus 211 ---------------~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 211 ---------------AYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred ---------------HHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 1222221 112456799999999986 345667777777777777778999999876655555
Q ss_pred Hhc
Q 007018 218 KAG 220 (621)
Q Consensus 218 ~~~ 220 (621)
+.+
T Consensus 273 ~~f 275 (336)
T PRK14974 273 REF 275 (336)
T ss_pred HHH
Confidence 544
No 204
>PRK08181 transposase; Validated
Probab=96.92 E-value=0.018 Score=58.83 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=68.9
Q ss_pred ChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 46 PTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 46 ptpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
+.+.|..++. .+-.++++++.||+|+|||-.......+.+ . .|.+++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~----~g~~v~f~-~~~~L~~~l~~a~~~------ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALI-E----NGWRVLFT-RTTDLVQKLQVARRE------ 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHH-H----cCCceeee-eHHHHHHHHHHHHhC------
Confidence 3455555542 344678999999999999965443333222 2 25556554 455666654321000
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcccCC
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENR 200 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~~~ 200 (621)
.+...++.. +.++++|||||.+...... ....+.+++.......
T Consensus 156 ---------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ---------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ---------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 011122221 3467899999998765332 2345666666554455
Q ss_pred cEEEEEccCcHHHHH
Q 007018 201 QTLLFSATLPSALAE 215 (621)
Q Consensus 201 q~ll~SATl~~~l~~ 215 (621)
.+|+.|-..+..+..
T Consensus 201 s~IiTSN~~~~~w~~ 215 (269)
T PRK08181 201 SILITANQPFGEWNR 215 (269)
T ss_pred CEEEEcCCCHHHHHH
Confidence 666666665555443
No 205
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.90 E-value=0.0066 Score=69.83 Aligned_cols=138 Identities=20% Similarity=0.248 Sum_probs=88.4
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 27 ~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
...+.|.+.+. -+..+...|++|+-.++..+| .++.|=+|+|||..... ++..|.. .|.++|+.+=|..-
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~----~gkkVLLtsyThsA 725 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA----LGKKVLLTSYTHSA 725 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH----cCCeEEEEehhhHH
Confidence 34455555554 234688899999999999887 67899999999976443 3333333 47889999999988
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCChH-----------------HHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 106 ALQTLKFTKELGRYTDLRISLLVGGDSME-----------------SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~~~gg~~~~-----------------~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+..+.-.++.++ +....+-.+...- ...+..-+.+.||.+|=--+-| +-+..+.
T Consensus 726 VDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~ 796 (1100)
T KOG1805|consen 726 VDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQ 796 (1100)
T ss_pred HHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccc
Confidence 777766665543 2222111111111 1122334567888888433322 2355677
Q ss_pred cceEEEeccccccC
Q 007018 169 VEYVVFDEADCLFG 182 (621)
Q Consensus 169 l~~vViDEah~l~~ 182 (621)
++++|+|||-.+..
T Consensus 797 FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 797 FDYCIIDEASQILL 810 (1100)
T ss_pred cCEEEEcccccccc
Confidence 99999999987664
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.85 E-value=0.011 Score=53.07 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007018 60 GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (621)
++.+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 678999999999999643
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.019 Score=61.29 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=69.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hH-HHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TR-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--tr-eLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
+.+++.|+||+|||......+.. +.. .|.++.++.. .| ..+.|+.. ++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~----~GkkVglI~aDt~RiaAvEQLk~----yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH----cCCcEEEEecCCcchHHHHHHHH----HhhhcCCcE-------------
Confidence 46789999999999876554443 322 2445544443 33 23344333 322222222
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCc-HHHHH
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~-~~l~~ 215 (621)
+++.+|..+.+.+.... ...++++|+||-+=+... ......+..++....+..-.+.+|||.. ..+.+
T Consensus 300 --------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 22345666665554311 112578899998877543 2234455555555444444577898754 45566
Q ss_pred HHHhc
Q 007018 216 FAKAG 220 (621)
Q Consensus 216 ~~~~~ 220 (621)
.++.+
T Consensus 370 i~~~F 374 (436)
T PRK11889 370 IITNF 374 (436)
T ss_pred HHHHh
Confidence 66654
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.07 Score=58.30 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
++-+++.||||+|||.+....+....... .+.++.++.- .|.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~------------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE------------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceE------------
Confidence 45688999999999976554433322011 2444554432 232121 233333333333322
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHh-cccCCcEEEEEccCcH-HHH
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQ-LSENRQTLLFSATLPS-ALA 214 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~-l~~~~q~ll~SATl~~-~l~ 214 (621)
.+.++..+...+.. +.++++||||.+-+.. +......+..++.. ..+....+++|||... .+.
T Consensus 283 ---------~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 283 ---------VVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------ccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 22344445444443 3357899999886543 22334556666662 2233457889998753 555
Q ss_pred HHHHhc
Q 007018 215 EFAKAG 220 (621)
Q Consensus 215 ~~~~~~ 220 (621)
+.+..+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 555444
No 209
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.67 E-value=0.0043 Score=64.46 Aligned_cols=143 Identities=22% Similarity=0.326 Sum_probs=83.4
Q ss_pred CCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 41 KGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
.|+..-...|+-|+.+++.- .=|.+.|+.|||||+.++.+.+++..... .-.+++|-=|+..+... ++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~d-------IG- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGED-------IG- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCcccc-------cC-
Confidence 46666677889999988865 34778999999999999988888876532 23457776676544321 11
Q ss_pred cCCCeEEEEEcCCC---hHHHHHHHhCCCCEEE----ECchHHHHhHhhcCCCCcCC----------cceEEEecccccc
Q 007018 119 YTDLRISLLVGGDS---MESQFEELAQNPDIII----ATPGRLMHHLSEVEDMSLKS----------VEYVVFDEADCLF 181 (621)
Q Consensus 119 ~~~l~~~~~~gg~~---~~~~~~~l~~~~~IiV----~Tpgrl~~~l~~~~~~~l~~----------l~~vViDEah~l~ 181 (621)
.+ .|+. +..|...+..+-.++. ++.+.+-..+.. ..+.+.. -.+||||||+.+-
T Consensus 294 -------fL-PG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT 364 (436)
T COG1875 294 -------FL-PGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT 364 (436)
T ss_pred -------cC-CCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC
Confidence 11 1211 1122211111111111 122222222222 2222211 1489999999864
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEE
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
..++..|+.+..++..++++.
T Consensus 365 ----pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ----PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ----HHHHHHHHHhccCCCEEEEcC
Confidence 468999999999988887754
No 210
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.64 E-value=0.0074 Score=64.68 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=44.3
Q ss_pred CChHHHHHHHHHH------hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 45 VPTPIQRKTMPLI------LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 45 ~ptpiQ~~aip~i------l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
++++-|+.++..+ ..+..+++.|+-|+|||..+- .+.+.+. ..+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~----~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLR----SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhc----cccceEEEecchHHHHHhc
Confidence 3678899998888 567889999999999998532 2222222 2467899999998766654
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0074 Score=53.76 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
+..+++.||+|+|||...... +..+. ..+..++++.++....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~----~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELG----PPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccC----CCCCCEEEECCEEccc
Confidence 467899999999999864422 22222 1223477777765443
No 212
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.64 E-value=0.0051 Score=61.84 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=66.6
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCC-ChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 91 ~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~-~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
...+.+||||.+-.-|..+.+.++.|. ..+..++-+..-. ..++|...+. ....|.||||+|+..++.. +.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 346789999998777777777777663 1123444455544 6788888886 4789999999999999976 6899999
Q ss_pred cceEEEecccc
Q 007018 169 VEYVVFDEADC 179 (621)
Q Consensus 169 l~~vViDEah~ 179 (621)
+.+||||--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998763
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.50 E-value=0.017 Score=56.34 Aligned_cols=124 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+++.||||+|||.+..-.+.. +... +.++.+++- .|.=|.. +++.+++..++.+.......+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~-~~~~----~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~~-------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAAR-LKLK----GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTESD-------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHH-HHHT----T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTSC--------
T ss_pred EEEECCCCCchHhHHHHHHHH-Hhhc----cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcchh--------
Confidence 678999999999875544333 3221 444554443 3322222 344444444555433222221
Q ss_pred hCCCCEEEECchHHH-HhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHH
Q 007018 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~-~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
|..+. +.+.. +..+++++|+||-+-+... .....++..++..+.+..-.+.+|||......+
T Consensus 68 ----------~~~~~~~~l~~---~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 68 ----------PAEIAREALEK---FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp ----------HHHHHHHHHHH---HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred ----------hHHHHHHHHHH---HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 11111 22221 2334677888888876542 234567777777776667789999998655443
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.47 E-value=0.062 Score=54.11 Aligned_cols=110 Identities=17% Similarity=0.272 Sum_probs=61.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
..+++.|++|+|||..... +...+.. .|..++++ +..+|...+...+.. .+
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~----~g~~v~~i-t~~~l~~~l~~~~~~-------------~~---------- 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLL----RGKSVLII-TVADIMSAMKDTFSN-------------SE---------- 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHh----cCCeEEEE-EHHHHHHHHHHHHhh-------------cc----------
Confidence 4689999999999976443 3334433 35666665 444444332221100 00
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHH-HHHHHHHhc-ccCCcEEEEEccCcHHHHH
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE-QLHKILGQL-SENRQTLLFSATLPSALAE 215 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~-~l~~il~~l-~~~~q~ll~SATl~~~l~~ 215 (621)
.+...+++. +.++++|||||.+......+.. .+..|+..- .....|++.|---+..+..
T Consensus 151 --------~~~~~~l~~--------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 151 --------TSEEQLLND--------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred --------ccHHHHHHH--------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 122223322 4468899999999876444433 455666643 3456777777765555543
No 215
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.45 E-value=0.0076 Score=61.37 Aligned_cols=67 Identities=16% Similarity=0.346 Sum_probs=55.3
Q ss_pred HHHHHHhcCCceEEEecCcccccCCCCC--------CCEEEEcCCCCChhHHHHHhcccCCCCCc-cEEEEEeccc
Q 007018 307 IHVSRFRARKTMFLIVTDVAARGIDIPL--------LDNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTSE 373 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~TdvaarGlDip~--------v~~VI~~d~P~s~~~~~qrvGR~gR~G~~-G~~i~~v~~~ 373 (621)
...+.|.+|+.+|+|.++.++.|+.+.. -++-|.+.+||++...+|..||+.|.|+. .-.|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 4567899999999999999999998753 23457889999999999999999999984 5556666543
No 216
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.22 E-value=0.085 Score=56.22 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
++-+.++||||.|||.+..-.+....... +...-+||-.-|--.+- .+.++.+++..++.+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~----------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY----------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec-----------
Confidence 66788999999999977543333333111 12334566655543221 2346666666666554444
Q ss_pred HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCc-HHHHHHH
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFA 217 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~-~~l~~~~ 217 (621)
+|.-|...+.. +.++++|.+|=+-+-. +.-..+++.+.+....+.--.+.+|||.- ..+.+..
T Consensus 268 ----------~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 268 ----------SPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred ----------CHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 44444433332 4556777777776533 22345666666666644555688899864 3344444
Q ss_pred Hh
Q 007018 218 KA 219 (621)
Q Consensus 218 ~~ 219 (621)
..
T Consensus 333 ~~ 334 (407)
T COG1419 333 KQ 334 (407)
T ss_pred HH
Confidence 43
No 217
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.20 E-value=0.044 Score=68.87 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
.+++.|+.|+..++.+. -+++.|..|+|||.. +-.+++.+..-....+..++.++||---|..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 58999999999999864 588999999999976 33444443321122466789999998776653
No 218
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.17 E-value=0.049 Score=50.07 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhcCC-ceEEEecCcccccCCCCC--CCEEEEcCCC
Q 007018 299 DMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL--LDNVINWDFP 344 (621)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~-~~ILV~TdvaarGlDip~--v~~VI~~d~P 344 (621)
..+..+...+++.|+... ..||++|.-.++|+|+|+ ++.||...+|
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344445677889998765 389999988999999996 5678877776
No 219
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.073 Score=61.60 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=67.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCC-eEEEEEcc-h-HH-HHHHHHHHHHHhhccCCCeEEEEEcCCChHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSP-T-RD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g-~~~LIL~P-t-re-La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~ 136 (621)
+-+.+.||||+|||.++...+...... .| .++.++.- | |. -.. .++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~RigA~e----QL~~~a~~~gvpv------------ 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRIGALE----QLRIYGRILGVPV------------ 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccchHHHH----HHHHHHHhCCCCc------------
Confidence 346789999999998766444332222 23 34444333 2 21 223 3344443333322
Q ss_pred HHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCc-HHHH
Q 007018 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (621)
Q Consensus 137 ~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~-~~l~ 214 (621)
.++.+|..+...+.. +.+.++|+||=+=+.. +....+++..+.....+....+.+|||.. ..+.
T Consensus 246 ---------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ---------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ---------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 223456666655553 3355788888887654 22234455555544445566788888863 3444
Q ss_pred HHHHhc
Q 007018 215 EFAKAG 220 (621)
Q Consensus 215 ~~~~~~ 220 (621)
+.++.+
T Consensus 312 ~i~~~f 317 (767)
T PRK14723 312 EVVHAY 317 (767)
T ss_pred HHHHHH
Confidence 455444
No 220
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.09 E-value=0.039 Score=50.81 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCc---eEEEecCc--ccccCCCCC--CCEEEEcCCC
Q 007018 304 ARKIHVSRFRARKT---MFLIVTDV--AARGIDIPL--LDNVINWDFP 344 (621)
Q Consensus 304 ~R~~~l~~F~~g~~---~ILV~Tdv--aarGlDip~--v~~VI~~d~P 344 (621)
....+++.|+.... .||+++.- .+.|||+|+ ++.||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 33567888887544 69998876 899999997 5688888877
No 221
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.2 Score=55.69 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=63.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc--chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~--PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~ 136 (621)
.|+-+++.|+||+|||......+......+ .+.++.++. +.|.-+.+ .++.++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~---~gkkVaLIdtDtyRigA~E---QLk~ya~iLgv~v~~---------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH---APRDVALVTTDTQRVGGRE---QLHSYGRQLGIAVHE---------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCceEEEecccccccHHH---HHHHhhcccCceeEe----------
Confidence 356688999999999987654433322221 133444443 23433322 233333333332221
Q ss_pred HHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCc-HHHH
Q 007018 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (621)
Q Consensus 137 ~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~-~~l~ 214 (621)
+.+++.+...+.. +.+.++||||.+=+... .....++..+... ......++++++.. ..+.
T Consensus 413 -----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 -----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 1133344444443 34678999999865421 1122233333322 23456788888864 3444
Q ss_pred HHHHh
Q 007018 215 EFAKA 219 (621)
Q Consensus 215 ~~~~~ 219 (621)
+.++.
T Consensus 476 eii~~ 480 (559)
T PRK12727 476 EVVRR 480 (559)
T ss_pred HHHHH
Confidence 44443
No 222
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.06 E-value=0.051 Score=67.44 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHH--HHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAF--LVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~af--llp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
.+++-|++|+..++.+ +-+++.|..|+|||.+. ++-++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 6999999999999976 56889999999999863 2222222221 2467789999998776654
No 223
>PRK08727 hypothetical protein; Validated
Probab=96.04 E-value=0.049 Score=54.57 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCcceEEEeccccccCCC-hHHHHHHHHHhccc-CCcEEEEEccCcHHH
Q 007018 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~-~~q~ll~SATl~~~l 213 (621)
.++++||+||+|.+.... ....+..++..... ..++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 355789999999886432 23344455554433 334444444444443
No 224
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.01 E-value=0.086 Score=48.58 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=25.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
+++.|++|+|||......+... .. .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT----KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh----cCCEEEEEECCcchH
Confidence 6789999999998654333322 22 356677777655443
No 225
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.96 E-value=0.072 Score=50.90 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=33.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
+++.|++|+|||...+--+.+.+. .|.++++++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999876644444443 36678888654 45666666665553
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.05 Score=54.55 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=30.6
Q ss_pred CCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 167 KSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 167 ~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
.+++++|+|+.|.+.. ..+...+..++..+......+++++|.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 3557899999998754 34566688888777654445666666544
No 227
>PRK08116 hypothetical protein; Validated
Probab=95.89 E-value=0.15 Score=52.16 Aligned_cols=110 Identities=15% Similarity=0.192 Sum_probs=60.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
..+++.|++|+|||.... .+...+... +..++++ +..+|...+...+.. . +..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~----~~~v~~~-~~~~ll~~i~~~~~~---~----------~~~-------- 167 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK----GVPVIFV-NFPQLLNRIKSTYKS---S----------GKE-------- 167 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc----CCeEEEE-EHHHHHHHHHHHHhc---c----------ccc--------
Confidence 349999999999997644 344455432 4455544 445555443322110 0 000
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc--ccCCChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHH
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC--LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~--l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~ 215 (621)
+...+++. +.+.++|||||.+. ..++ ....+..|+... ....++|+.|...|..+..
T Consensus 168 ---------~~~~~~~~--------l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 168 ---------DENEIIRS--------LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred ---------cHHHHHHH--------hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 11112211 34668999999964 2232 345566666654 3456677777766666544
No 228
>PRK06921 hypothetical protein; Provisional
Probab=95.83 E-value=0.21 Score=51.10 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
.+..+++.|++|+|||.... .+...+... .|..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEEE-HHHHHHH
Confidence 35679999999999996543 333333321 155666655 4455444
No 229
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.79 E-value=0.15 Score=52.24 Aligned_cols=128 Identities=16% Similarity=0.228 Sum_probs=70.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc-h-H-HHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-R-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P-t-r-eLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
..+++.+++|+|||..+.+.+... .. .+.++.++.. + | ..+.|+...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l-~~----~~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~------------ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF-HG----KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI------------ 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HH----cCCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE------------
Confidence 568899999999998776554432 22 2334443333 2 2 455554433332 222221
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccC-cHHHHH
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATL-PSALAE 215 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl-~~~l~~ 215 (621)
...+|..+...+... -....+++||||-+=+.. +......+..++....+..-.+.+|||. +..+.+
T Consensus 135 ---------~~~~~~~l~~~l~~l--~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYF--KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 112445554444331 112467899999987754 2223445555555554444466799986 456667
Q ss_pred HHHhc
Q 007018 216 FAKAG 220 (621)
Q Consensus 216 ~~~~~ 220 (621)
.++.+
T Consensus 204 ~~~~f 208 (270)
T PRK06731 204 IITNF 208 (270)
T ss_pred HHHHh
Confidence 77665
No 230
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.79 E-value=0.0089 Score=65.46 Aligned_cols=142 Identities=22% Similarity=0.262 Sum_probs=72.7
Q ss_pred EcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCCCeEEEEEcCCChHH----HHHHH
Q 007018 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDSMES----QFEEL 140 (621)
Q Consensus 66 ~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~l~~~~~~gg~~~~~----~~~~l 140 (621)
...||||||++....+++..... -..-|+.|..-....-+.. +........-+.-...++|...+. .+...
T Consensus 3 ~matgsgkt~~ma~lil~~y~kg----yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKG----YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhc----hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 45699999998877777776542 1235566655444443322 221111110011111222222111 11122
Q ss_pred hCCCCEEEECchHHHHhHhhcCC--C---CcCCcc-eEEEeccccccCCC-------------hHHHHHHHHHhcccCCc
Q 007018 141 AQNPDIIIATPGRLMHHLSEVED--M---SLKSVE-YVVFDEADCLFGMG-------------FAEQLHKILGQLSENRQ 201 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~--~---~l~~l~-~vViDEah~l~~~g-------------f~~~l~~il~~l~~~~q 201 (621)
..+..|+++|...|...+.+.+. . ++.+.. +.+-||||++.... +...+...+.. .++--
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~ 157 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNL 157 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCce
Confidence 34677999999988776654222 1 244444 45669999986321 22222222222 23445
Q ss_pred EEEEEccCcHH
Q 007018 202 TLLFSATLPSA 212 (621)
Q Consensus 202 ~ll~SATl~~~ 212 (621)
++.||||.|+.
T Consensus 158 ~lef~at~~k~ 168 (812)
T COG3421 158 LLEFSATIPKE 168 (812)
T ss_pred eehhhhcCCcc
Confidence 78899999843
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=95.69 E-value=0.083 Score=59.33 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC--C
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--L 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~--l 122 (621)
.|.|+|+..+..+..++-.++..+-..|||.+....++..+... .+..+++++|++.-|..+++.++.+..... +
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 48899999998876677777888889999988775554443322 366899999999999988887765433211 0
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhccc--CC
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NR 200 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~--~~ 200 (621)
... +..... ..-.+.++..|.+.|.+. ....=.+..++|+||+|.+-+ +.+.+..+...+.. ..
T Consensus 136 ~~~-i~~~~~---~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~ 201 (534)
T PHA02533 136 QPG-IVEWNK---GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSS 201 (534)
T ss_pred hcc-eeecCc---cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCc
Confidence 100 000000 001113445554443221 112223567899999997644 33444444444433 23
Q ss_pred cEEEEEccC
Q 007018 201 QTLLFSATL 209 (621)
Q Consensus 201 q~ll~SATl 209 (621)
+++++|.+.
T Consensus 202 r~iiiSTp~ 210 (534)
T PHA02533 202 KIIITSTPN 210 (534)
T ss_pred eEEEEECCC
Confidence 455555553
No 232
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.68 E-value=0.069 Score=57.77 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=45.4
Q ss_pred CCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 42 GYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
.|...+|.|-+-+..+. .+.++++..|+|+|||.+.+-.++..-.. -+..-.+.++.+-|.--.+-....++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~-~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH-YPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh-CCcccceEEEecCcchHHHHHHHHHHH
Confidence 56778899988776554 34679999999999998876655544333 232344566655554333333333333
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=95.67 E-value=0.054 Score=54.11 Aligned_cols=46 Identities=17% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCcceEEEeccccccC-CChHHHHHHHHHhccc-CCcEEEEEccCcHH
Q 007018 167 KSVEYVVFDEADCLFG-MGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (621)
Q Consensus 167 ~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~-~~q~ll~SATl~~~ 212 (621)
.+.+++|+||.|.+.. ..+...+..++..+.. +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4668999999998763 3344456666666544 44567788876443
No 234
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.65 E-value=0.06 Score=59.47 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=60.9
Q ss_pred cCCCCCHHHHHH-HHHCCCCCC-------hHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC-CCCeEE
Q 007018 26 ESLNLSPNVFRA-IKRKGYKVP-------TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRA 96 (621)
Q Consensus 26 ~~l~L~~~l~~~-l~~~g~~~p-------tpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~-~~g~~~ 96 (621)
.++++.++++.. |++.--..+ -+.|-++|.. -.++-+|+.|..|||||.+++--+...|..+.. -.+..+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 456777776654 444433333 3344444432 234568999999999999988666655544322 234459
Q ss_pred EEEcchHHHHHHHHHHHHHhh
Q 007018 97 LILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 97 LIL~PtreLa~Q~~~~~~~l~ 117 (621)
||+.|.+.+..-+..++=++|
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999999888887776
No 235
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.64 E-value=0.065 Score=58.27 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
+-......+..+..++++++.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455566677777889999999999999997654
No 236
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.62 E-value=0.078 Score=54.08 Aligned_cols=120 Identities=20% Similarity=0.322 Sum_probs=60.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH---HHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT---KELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~---~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
+++.||||||||.. +..|+..+.++. ...+|=|---+|-+.+-.+.+ ++++..+. .........
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~---~~HIlTIEDPIE~vh~skkslI~QREvG~dT~---------sF~~aLraA 194 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHK---AKHILTIEDPIEYVHESKKSLINQREVGRDTL---------SFANALRAA 194 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccC---CcceEEecCchHhhhcchHhhhhHHHhcccHH---------HHHHHHHHH
Confidence 88999999999976 778888887753 223444433333333222211 22221110 011222345
Q ss_pred HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
+..+||||+.---|=..-+.- .+....-+.+||=-.|.. +-...+.+|+..+|..-
T Consensus 195 LReDPDVIlvGEmRD~ETi~~--ALtAAETGHLV~~TLHT~---sA~~ti~RiidvFp~~e 250 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRL--ALTAAETGHLVFGTLHTN---SAAKTIDRIIDVFPAEE 250 (353)
T ss_pred hhcCCCEEEEeccccHHHHHH--HHHHHhcCCEEEEecccc---cHHHHHHHHHHhCChhh
Confidence 677888875422111111110 112223346777766653 34556777777776543
No 237
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.57 E-value=0.088 Score=57.54 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=66.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc-h-HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
-+++.|++|+|||.+....+. .+.. .|.+++++.. + |.-+ .+.++.++...++.+........
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d------- 161 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKD------- 161 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccC-------
Confidence 477899999999987654443 3433 3555655543 2 2222 22333333333443221111111
Q ss_pred HhCCCCEEEECchH-HHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHH
Q 007018 140 LAQNPDIIIATPGR-LMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (621)
Q Consensus 140 l~~~~~IiV~Tpgr-l~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (621)
|.. +.+.+.. +...++||||.+-++. +....+++..+.....+..-++.++||......+.+
T Consensus 162 -----------~~~i~~~al~~-----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a 225 (437)
T PRK00771 162 -----------AVEIAKEGLEK-----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQA 225 (437)
T ss_pred -----------HHHHHHHHHHH-----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHH
Confidence 111 2222322 1223889999996643 223445566666666566667888888765555555
Q ss_pred Hh
Q 007018 218 KA 219 (621)
Q Consensus 218 ~~ 219 (621)
+.
T Consensus 226 ~~ 227 (437)
T PRK00771 226 KA 227 (437)
T ss_pred HH
Confidence 44
No 238
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.49 E-value=0.09 Score=51.99 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=25.9
Q ss_pred cceEEEeccccccCC-ChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 169 l~~vViDEah~l~~~-gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
.++|||||+|.+... .....+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999998653 235566666665433323455666643
No 239
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.47 E-value=0.11 Score=52.08 Aligned_cols=43 Identities=21% Similarity=0.477 Sum_probs=26.9
Q ss_pred cceEEEeccccccC-CChHHHHHHHHHhccc-CCcEEEEEccCcH
Q 007018 169 VEYVVFDEADCLFG-MGFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (621)
Q Consensus 169 l~~vViDEah~l~~-~gf~~~l~~il~~l~~-~~q~ll~SATl~~ 211 (621)
+++|+|||+|.+.. ..+...+..++..+.. +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999999764 3345566666666543 3324555666544
No 240
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.45 E-value=0.085 Score=61.24 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH-CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa 327 (621)
..|....+..+...+..+.++||.+++..-+..+.+.|++ .|..+..+||+++..+|.....+...|+.+|+|+|..+.
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal 252 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL 252 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh
Confidence 4577666667777677788999999999999999998876 478899999999999999999999999999999997543
Q ss_pred ccCCCCCCCEEEEcC
Q 007018 328 RGIDIPLLDNVINWD 342 (621)
Q Consensus 328 rGlDip~v~~VI~~d 342 (621)
. +.++++.+||.-+
T Consensus 253 ~-~p~~~l~liVvDE 266 (679)
T PRK05580 253 F-LPFKNLGLIIVDE 266 (679)
T ss_pred c-ccccCCCEEEEEC
Confidence 2 5567888887544
No 241
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.42 E-value=0.035 Score=60.22 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=76.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH-HHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre-La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
-.++.|..|||||.+...-++..+... ..+.+++++-|+.. |..-++..++......++....-.....+. +. +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~--i~-~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME--IK-I 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE--EE-e
Confidence 367899999999999888888777653 13678999999886 666666766655444444211111111000 00 1
Q ss_pred hC-CCCEEEECc-hHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc--cCCcEEEEEccCcHH
Q 007018 141 AQ-NPDIIIATP-GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSA 212 (621)
Q Consensus 141 ~~-~~~IiV~Tp-grl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~--~~~q~ll~SATl~~~ 212 (621)
.. +..|++..- +.... ......+.++.+|||..+... .+..++..+. .....+++|.||+..
T Consensus 78 ~~~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred cCCCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11 233444332 11111 112334689999999987543 3333333332 333358899997653
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.08 Score=53.75 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=45.3
Q ss_pred HHHHHCCCCCChHHHHHHHHHHh-------cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 36 RAIKRKGYKVPTPIQRKTMPLIL-------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 36 ~~l~~~g~~~ptpiQ~~aip~il-------~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+.+....|......+..++..+. ++.++++.|++|+|||........+.+ . .|.++ +++++.+|+.+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----~g~sv-~f~~~~el~~~ 147 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K----AGISV-LFITAPDLLSK 147 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H----cCCeE-EEEEHHHHHHH
Confidence 33344455555555665544433 567999999999999987665444444 3 35554 45677788777
Q ss_pred HHHHH
Q 007018 109 TLKFT 113 (621)
Q Consensus 109 ~~~~~ 113 (621)
+....
T Consensus 148 Lk~~~ 152 (254)
T COG1484 148 LKAAF 152 (254)
T ss_pred HHHHH
Confidence 55433
No 243
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.40 E-value=0.11 Score=57.42 Aligned_cols=109 Identities=16% Similarity=0.260 Sum_probs=57.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
..+++.|++|+|||.... .+...+... ..+.+++++.. .++..++...++. .
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi~~-~~~~~~~~~~~~~---------------~--------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYVTS-EKFTNDFVNALRN---------------N--------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHc---------------C---------
Confidence 458999999999997543 333344332 12556666644 4554443222210 0
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcc-cCCcEEEEEccCcHHHH
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~-~~~q~ll~SATl~~~l~ 214 (621)
+...+... +.++++|||||+|.+.... ..+.+..++..+- .+.++++.|.+.|..+.
T Consensus 201 ---------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 11122211 2357799999999876532 2345555555543 34555555544444443
No 244
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.40 E-value=0.29 Score=45.83 Aligned_cols=131 Identities=24% Similarity=0.328 Sum_probs=79.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEE---Ecc---hHHHHHHHHHHHHHhhccCCCeEEEEEcC-----C
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI---LSP---TRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LI---L~P---treLa~Q~~~~~~~l~~~~~l~~~~~~gg-----~ 131 (621)
+.+...+|.|||.+.+--++..+.. |.++++ +=. +-|+ ..++++. ++.+...-.+ .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~-----g~~v~~vQFlKg~~~~gE~-----~~l~~l~---~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH-----GYRVGVVQFLKGGWKYGEL-----KALERLP---NIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEEeCCCCccCHH-----HHHHhCC---CcEEEECCCCCccCCC
Confidence 5577788999999988777766543 777877 322 2222 1333332 3332221111 1
Q ss_pred ChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccC
Q 007018 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 132 ~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl 209 (621)
...+..... ...+....+ .+....+++||+||+=.....|+ .+.+..++...|...-+|+.+-.+
T Consensus 72 ~~~~~~~~a-----------~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 72 NDEEDIAAA-----------AEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred ChHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111111110 122233322 23356789999999988877664 567888888889888889988899
Q ss_pred cHHHHHHHHh
Q 007018 210 PSALAEFAKA 219 (621)
Q Consensus 210 ~~~l~~~~~~ 219 (621)
|+.+.+.+..
T Consensus 139 p~~l~e~AD~ 148 (159)
T cd00561 139 PKELIEAADL 148 (159)
T ss_pred CHHHHHhCce
Confidence 9998887653
No 245
>PRK12377 putative replication protein; Provisional
Probab=95.33 E-value=0.32 Score=49.18 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=58.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
..+++.|++|+|||-... .+...+.. .|..+++ ++..+|..++...... +.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v~~-i~~~~l~~~l~~~~~~--------------~~--------- 152 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSVIV-VTVPDVMSRLHESYDN--------------GQ--------- 152 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCeEE-EEHHHHHHHHHHHHhc--------------cc---------
Confidence 579999999999996544 33334433 3555544 4555666654332110 00
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcc-cCCcEEEEEccCcHHH
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~-~~~q~ll~SATl~~~l 213 (621)
+...++ . .+.++++|||||.+...... -...+..|+..-- ....+++.|-=-+..+
T Consensus 153 ---------~~~~~l---~-----~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 153 ---------SGEKFL---Q-----ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred ---------hHHHHH---H-----HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 001112 1 14578899999996543222 3445566665543 3466777665444433
No 246
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.34 Score=52.64 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
|.-+.+.|+||+|||......+-..+..+. ....++|.+.+.-.+ ..+.+..+++..++.+....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~----------- 255 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG--ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIK----------- 255 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCC-----------
Confidence 445889999999999876544433322211 122356666653321 12234445544455443222
Q ss_pred HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccC-cHHHHHHH
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATL-PSALAEFA 217 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl-~~~l~~~~ 217 (621)
++..+...+. .+.+.+++++|.+=+.-. .....++..+....+.....+++|||. ...+.+.+
T Consensus 256 ----------~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 256 ----------DIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ----------CHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 2222222222 144566778887632211 112334444332223345568899996 44455555
Q ss_pred Hhc
Q 007018 218 KAG 220 (621)
Q Consensus 218 ~~~ 220 (621)
..+
T Consensus 321 ~~f 323 (420)
T PRK14721 321 SAY 323 (420)
T ss_pred HHh
Confidence 554
No 247
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.29 E-value=0.53 Score=49.63 Aligned_cols=112 Identities=13% Similarity=0.185 Sum_probs=61.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.+..+++.|+||+|||..... +...+.. .|..+++ .+..+|..++... .+. ... .
T Consensus 182 ~~~~Lll~G~~GtGKThLa~a-Ia~~l~~----~g~~V~y-~t~~~l~~~l~~~--~~~-----------~~~--~---- 236 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNC-IAKELLD----RGKSVIY-RTADELIEILREI--RFN-----------NDK--E---- 236 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH----CCCeEEE-EEHHHHHHHHHHH--Hhc-----------cch--h----
Confidence 357899999999999975443 3333333 3556655 4455665554321 010 000 0
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh-HHHHHHHHHhcc-cCCcEEEEEccCcHHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLS-ENRQTLLFSATLPSALAE 215 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf-~~~l~~il~~l~-~~~q~ll~SATl~~~l~~ 215 (621)
....+ -.+.++++||||+.+......| ...+..|+...- ....+|+.|--.|..+..
T Consensus 237 ---------------~~~~~-----~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 237 ---------------LEEVY-----DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLK 295 (329)
T ss_pred ---------------HHHHH-----HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 00001 1134678999999987653333 446666666543 345666666655555544
No 248
>PRK09183 transposase/IS protein; Provisional
Probab=95.26 E-value=0.12 Score=52.61 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=29.3
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+..|..+++.||+|+|||............ .|..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEe-HHHHHHH
Confidence 456788999999999999755533332222 366676654 3455444
No 249
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.24 E-value=0.074 Score=61.59 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
..+++-|++|+-. ....+++.|..|||||.+.+--+...+... ...+.++|+|+.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 4699999999853 345689999999999988665554444332 223568999999999999887766554
No 250
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=0.1 Score=58.47 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa 327 (621)
..|....+..+...+..+.++||.+++..-+..+...|++. +..+..+||+++..+|..+..+..+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 34666666777777777889999999999999999888764 77889999999999999999889999999999997543
Q ss_pred ccCCCCCCCEEEEcC
Q 007018 328 RGIDIPLLDNVINWD 342 (621)
Q Consensus 328 rGlDip~v~~VI~~d 342 (621)
. +.++++.+||.-+
T Consensus 88 f-~p~~~l~lIIVDE 101 (505)
T TIGR00595 88 F-LPFKNLGLIIVDE 101 (505)
T ss_pred c-CcccCCCEEEEEC
Confidence 2 4566788887443
No 251
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.23 E-value=0.049 Score=64.57 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=89.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhh-------------CCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEE
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-------------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~-------------~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~ 126 (621)
|+++++.-..|+|||.+-+...+..+-.. ....-.-.|||||. ++..||+..+..-.... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56789999999999988765554432110 00112347999997 45688777776654332 56665
Q ss_pred EEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-----------------CcCCcc--eEEEeccccccCCChHH
Q 007018 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-----------------SLKSVE--YVVFDEADCLFGMGFAE 187 (621)
Q Consensus 127 ~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-----------------~l~~l~--~vViDEah~l~~~gf~~ 187 (621)
+.|=.+.......---.+|||++|+..|..-+...... +|-.+. -|++|||..+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 55522111000011236999999999886544332100 111122 289999998655 355
Q ss_pred HHHHHHHhcccCCcEEEEEccCcHHHHHH
Q 007018 188 QLHKILGQLSENRQTLLFSATLPSALAEF 216 (621)
Q Consensus 188 ~l~~il~~l~~~~q~ll~SATl~~~l~~~ 216 (621)
...+.+..++.- ..-..|+|+-..+.++
T Consensus 530 ~~a~M~~rL~~i-n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 530 AAAEMVRRLHAI-NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHhhhh-ceeeecCCchhhhhhh
Confidence 666666666533 3578899965444443
No 252
>CHL00181 cbbX CbbX; Provisional
Probab=95.21 E-value=0.27 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp 80 (621)
|.++++.||+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 446899999999999876533
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.18 E-value=0.14 Score=55.66 Aligned_cols=130 Identities=12% Similarity=0.111 Sum_probs=68.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+++.|++|+|||.+..-.+. .+.. .|.++++++. .|.-|.+ +++.++...++.+.....+.+...-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~-~l~~----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i---- 170 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAY-YYQR----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI---- 170 (429)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH----
Confidence 67899999999976553333 3332 3556666554 3433333 4445555555655444333221110
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
..+.+.. +.-..+++||||=+-++-. ......+..+.....+..-.+.++||......+.++.
T Consensus 171 -------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~ 234 (429)
T TIGR01425 171 -------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKA 234 (429)
T ss_pred -------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHH
Confidence 0001111 1113456677776655432 2244556666655555566788888876655555554
Q ss_pred c
Q 007018 220 G 220 (621)
Q Consensus 220 ~ 220 (621)
+
T Consensus 235 F 235 (429)
T TIGR01425 235 F 235 (429)
T ss_pred H
Confidence 4
No 254
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.12 E-value=0.067 Score=54.60 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 163 ~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
..+...+++||+||||.|... -...+...+...+.....+|...-+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 345677889999999997653 2445566666666555566655543
No 255
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.08 E-value=0.041 Score=49.06 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999853
No 256
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.08 E-value=0.091 Score=60.33 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=93.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH
Q 007018 34 VFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (621)
Q Consensus 34 l~~~l~~~g~~~ptpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~ 111 (621)
.-+.+.....+.+..-|.+.+..++.++ -+++.|.-|=|||.+.-+.+. .+.... . ..+++|.+|+.+=+..+++
T Consensus 203 ~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-~-~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 203 FPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-G-SVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred CCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-C-CceEEEeCCCHHHHHHHHH
Confidence 3444666677777777778888888764 488899999999998887662 333221 1 4589999999999998888
Q ss_pred HHHHhhccCCCeEEEEEcC--CChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHH
Q 007018 112 FTKELGRYTDLRISLLVGG--DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (621)
Q Consensus 112 ~~~~l~~~~~l~~~~~~gg--~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l 189 (621)
++.+-....|++..+...+ .... .-.....|-+-+|.... . .-+++|||||=-+- ...+
T Consensus 280 fa~~~l~~lg~~~~v~~d~~g~~~~----~~~~~~~i~y~~P~~a~----------~-~~DllvVDEAAaIp----lplL 340 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDALGEIRE----VSGDGFRIEYVPPDDAQ----------E-EADLLVVDEAAAIP----LPLL 340 (758)
T ss_pred HHHHhHHHhCCccccccccccceee----ecCCceeEEeeCcchhc----------c-cCCEEEEehhhcCC----hHHH
Confidence 8777666665543322221 1100 00122334455554332 1 15789999996532 2334
Q ss_pred HHHHHhcccCCcEEEEEccC
Q 007018 190 HKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl 209 (621)
..++.. .+.++||.|+
T Consensus 341 ~~l~~~----~~rv~~sTTI 356 (758)
T COG1444 341 HKLLRR----FPRVLFSTTI 356 (758)
T ss_pred HHHHhh----cCceEEEeee
Confidence 444333 3468888887
No 257
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.06 E-value=0.14 Score=59.04 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC-C-CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc
Q 007018 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (621)
Q Consensus 248 ~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g-~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (621)
...|....+.++...+..++++||.++....+..+...|+.. | ..+..+|++++..+|.....+..+|+.+|+|+|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 457889999999999999999999999999999999999865 3 56889999999999999999999999999999976
Q ss_pred ccccCCCCCCCEEEEcC
Q 007018 326 AARGIDIPLLDNVINWD 342 (621)
Q Consensus 326 aarGlDip~v~~VI~~d 342 (621)
+. =.=++++.+||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 43 24556777777544
No 258
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.02 E-value=0.36 Score=46.57 Aligned_cols=146 Identities=16% Similarity=0.163 Sum_probs=82.7
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH-HHHHHHHHHhhccCCCeEEEEEcCCChHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA-LQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa-~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~ 136 (621)
+....+++...+|.|||.+.+--++..+.. |.+++|+-=-+--. .-=...++.+ .++.+ ...|....-.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-----G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~--~~~g~~~~~~ 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH-----GKKVGVVQFIKGAWSTGERNLLEFG---GGVEF--HVMGTGFTWE 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC-----CCeEEEEEEecCCCccCHHHHHhcC---CCcEE--EECCCCCccc
Confidence 355679999999999999988777766553 66777763211100 0001122221 12222 2122211000
Q ss_pred HHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCcHHHH
Q 007018 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALA 214 (621)
Q Consensus 137 ~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~~~l~ 214 (621)
..+.+--+......+....+ .+.-..+++||+||.-...+.|+ .+.+..++...|...-+|+.--..|+.+.
T Consensus 90 ----~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Li 163 (191)
T PRK05986 90 ----TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELI 163 (191)
T ss_pred ----CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHH
Confidence 00000000011122333322 23346789999999998888775 56778888888888888888888899988
Q ss_pred HHHHh
Q 007018 215 EFAKA 219 (621)
Q Consensus 215 ~~~~~ 219 (621)
+.+..
T Consensus 164 e~ADl 168 (191)
T PRK05986 164 EAADL 168 (191)
T ss_pred HhCch
Confidence 87754
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.02 E-value=0.38 Score=49.40 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=65.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc--chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~--PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
+-+++.|++|+|||.+..-.+.. +.. .|.+++++. +.|.-+.+ .++.++...++.+.....+.+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~-l~~----~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~dp~---- 140 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANK-LKK----QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGADPA---- 140 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh----cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCCHH----
Confidence 44778899999999876644432 322 356676665 23433322 23333333333322111111111
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcc------cCCcEEEEEccCcH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS------ENRQTLLFSATLPS 211 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~------~~~q~ll~SATl~~ 211 (621)
......+.. ....++++||||=+-++. +.....++..+....+ ..--++.++||...
T Consensus 141 -------------~~~~~~l~~---~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 141 -------------AVAFDAIQK---AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred -------------HHHHHHHHH---HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 011111111 123456778888776654 2223445555555444 45567889998765
Q ss_pred HHHHHHHhc
Q 007018 212 ALAEFAKAG 220 (621)
Q Consensus 212 ~l~~~~~~~ 220 (621)
.....+..+
T Consensus 205 ~~~~~~~~f 213 (272)
T TIGR00064 205 NALEQAKVF 213 (272)
T ss_pred HHHHHHHHH
Confidence 544444443
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.01 E-value=0.07 Score=54.54 Aligned_cols=66 Identities=26% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 33 ~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.+.++|...|.....|--.+.+--+..|.-+++.|++|+|||...+..+.+.+.. .|.++++++-.
T Consensus 3 ~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~E 68 (271)
T cd01122 3 EIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISLE 68 (271)
T ss_pred hhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEcc
Confidence 4455555444333222222222334456779999999999997655444433322 26778888753
No 261
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.00 E-value=0.16 Score=55.29 Aligned_cols=108 Identities=17% Similarity=0.277 Sum_probs=57.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
.+++.|++|+|||... ..+...+... ..+.+++++.. ..+..++...+.
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~~-~~~~~~~~~~~~--------------------------- 186 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVSS-EKFTNDFVNALR--------------------------- 186 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEEH-HHHHHHHHHHHH---------------------------
Confidence 5889999999999754 3344444432 13566777754 334333222111
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHhcc-cCCcEEEEEccCcHHHH
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~-~~~q~ll~SATl~~~l~ 214 (621)
.+ +...+... +.++++|||||+|.+.... ....+..++..+. .++++++.|...|..+.
T Consensus 187 ~~------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 187 NN------KMEEFKEK--------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred cC------CHHHHHHH--------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 00 11222222 2346799999999876542 2344555555443 34565554444444443
No 262
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.00 E-value=0.15 Score=50.66 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.4
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCc-EEEEEccCcH
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ-TLLFSATLPS 211 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q-~ll~SATl~~ 211 (621)
..++|||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999987543 24455556655544444 5777777654
No 263
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.99 E-value=0.14 Score=65.91 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHH---HHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFL---VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~--dvv~~a~TGSGKT~afl---lp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
.+++.|+.|+..++.+. -+++.|..|+|||...- -++.+.+.. .|..++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHH
Confidence 59999999999998764 47789999999997641 233333332 477899999998776654
No 264
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.97 E-value=0.056 Score=51.78 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=28.1
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
-.++++++.|++|+|||..+...+-+.+. .|..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEe-ecCceeccc
Confidence 35688999999999999876544444433 36666664 555665553
No 265
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.94 E-value=0.1 Score=60.70 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
..|....+..+...+..+.+++|.++|+.-+...+..++. .++.+..++|+++..+|..++....+|+.+|+|+|.
T Consensus 293 SGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 372 (681)
T PRK10917 293 SGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTH 372 (681)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchH
Confidence 3454433333333445678999999999888877666554 478899999999999999999999999999999996
Q ss_pred c-ccccCCCCCCCEEEEc
Q 007018 325 V-AARGIDIPLLDNVINW 341 (621)
Q Consensus 325 v-aarGlDip~v~~VI~~ 341 (621)
. +...+.++++.+||.-
T Consensus 373 ~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 373 ALIQDDVEFHNLGLVIID 390 (681)
T ss_pred HHhcccchhcccceEEEe
Confidence 4 4556778899998853
No 266
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.92 E-value=0.0092 Score=56.80 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=52.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCC
Q 007018 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143 (621)
Q Consensus 64 v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~ 143 (621)
|+.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+=+..+++.+..-.+..+++...... ..........+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-----------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccccccccccc
Confidence 578999999998766554433322 12579999999998888777655443333332200000 00000111235
Q ss_pred CCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 144 ~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
..|-+..|+.+... ....+++|||||=.+- ...+..++. ....++||.|.
T Consensus 74 ~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~----~~~~vv~stTi 123 (177)
T PF05127_consen 74 QRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLR----RFPRVVFSTTI 123 (177)
T ss_dssp CC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEB
T ss_pred ceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHh----hCCEEEEEeec
Confidence 56777777765411 2245899999996532 334444433 33467778886
No 267
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.45 Score=50.81 Aligned_cols=128 Identities=13% Similarity=0.157 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHH-HHHHHHHHHHHhhccCCCeEEEEEcCCChHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--tre-La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~ 136 (621)
++-+++.||+|+|||......+.. +.. .|.++.++.- .|. -+.|+ +.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gAveQL----k~yae~lgvpv~----------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGAVEQF----QGYADKLDVELI----------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccHHHHH----HHHhhcCCCCEE-----------
Confidence 455789999999999876654443 222 2444544432 232 12333 333333333221
Q ss_pred HHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCc-HHHH
Q 007018 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (621)
Q Consensus 137 ~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~-~~l~ 214 (621)
++.+|..+.+.+... ....++++|+||=+=+... ......+..+.....+.--.+.+|||.. ..+.
T Consensus 266 ----------~~~dp~dL~~al~~l--~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~ 333 (407)
T PRK12726 266 ----------VATSPAELEEAVQYM--TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVM 333 (407)
T ss_pred ----------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHH
Confidence 123455554444331 1124567788887765431 1223344444444433333456677643 3444
Q ss_pred HHHHh
Q 007018 215 EFAKA 219 (621)
Q Consensus 215 ~~~~~ 219 (621)
+++..
T Consensus 334 ~i~~~ 338 (407)
T PRK12726 334 TILPK 338 (407)
T ss_pred HHHHh
Confidence 44433
No 268
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.91 E-value=0.13 Score=53.94 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=26.8
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
..++|||||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999844334566677777766666655544
No 269
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.89 E-value=0.055 Score=62.77 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.++|-|++++.. ....+++.|..|||||.+..--+...+.... -...++|+|+.|+..|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHH
Confidence 378999999865 3467889999999999986666665554321 23457999999999999988877654
No 270
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.89 E-value=0.1 Score=58.00 Aligned_cols=149 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhc-----C----CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 48 PIQRKTMPLILS-----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 48 piQ~~aip~il~-----g----~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
|+|+-.+-.++. | +.+++.-+-|-|||......++..+.-. ...+..+++.+++++-|..+++.+..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 678888877762 2 3588888999999976555555444322 23477899999999999999998888764
Q ss_pred cCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhh-cCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc
Q 007018 119 YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (621)
Q Consensus 119 ~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~-~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l 196 (621)
......... . . .... ..-.|.....+.++..+.. ....+-.+..++|+||+|..-+......+..-....
T Consensus 80 ~~~~l~~~~-~-~------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 80 ASPELRKRK-K-P------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGAR 151 (477)
T ss_pred hChhhccch-h-h------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccC
Confidence 422111000 0 0 0000 1122332222222222221 122334467899999999987643333333333332
Q ss_pred ccCCcEEEEE
Q 007018 197 SENRQTLLFS 206 (621)
Q Consensus 197 ~~~~q~ll~S 206 (621)
++++++.+|
T Consensus 152 -~~pl~~~IS 160 (477)
T PF03354_consen 152 -PNPLIIIIS 160 (477)
T ss_pred -CCceEEEEe
Confidence 345555443
No 271
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.87 E-value=0.25 Score=54.54 Aligned_cols=109 Identities=13% Similarity=0.202 Sum_probs=59.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
..+++.|++|+|||-.. -.+...+... ..+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 35899999999999542 3444444432 23567776655 455555433332100
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-ChHHHHHHHHHhccc-CCcEEEEEccCcHH
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-gf~~~l~~il~~l~~-~~q~ll~SATl~~~ 212 (621)
+.+..... .+.++++|||||+|.+... ...+.+..++..+.. +.|+|+.|-..|..
T Consensus 195 -----------~~~~~~~~-----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 195 -----------KEIEQFKN-----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred -----------hHHHHHHH-----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 11111111 1346789999999987642 234556666665543 34555555554443
No 272
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.65 E-value=0.42 Score=48.58 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=25.2
Q ss_pred CChHHHHHHHHHHh----cCC-cEEEEcCCCchHHHHHH
Q 007018 45 VPTPIQRKTMPLIL----SGA-DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~-dvv~~a~TGSGKT~afl 78 (621)
.+++.+.+++..+. .+. -+++.|++|+|||...-
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 57777887877654 233 48899999999997644
No 273
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.61 E-value=0.18 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~ 81 (621)
+-+++.||||+|||......+
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 357889999999998655433
No 274
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.57 E-value=0.35 Score=49.26 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.++++.||+|+|||...-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997654
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.52 E-value=0.3 Score=48.78 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=33.5
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
-.|.-+++.|++|+|||...+-.+...+. .|.++++++.. +-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 34677999999999999865433333322 35678888853 33344444444443
No 276
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.49 E-value=0.082 Score=55.05 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~-dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+++..+....-..|..+++-|...+-.+..++ +++++|.||||||.. +..|....+. .-|++.+--|.||-.+
T Consensus 142 f~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-----LNal~~~i~~-~eRvItiEDtaELql~ 215 (355)
T COG4962 142 FPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-----LNALSGFIDS-DERVITIEDTAELQLA 215 (355)
T ss_pred cccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-----HHHHHhcCCC-cccEEEEeehhhhccC
Confidence 34444444444467789999999999888876 999999999999974 2233322222 3389999999998555
No 277
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.29 E-value=0.085 Score=59.71 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHH-HHHHhhccCC
Q 007018 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTD 121 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~-~~~~l~~~~~ 121 (621)
..+|+|++.+..+-.- +.|+++..+-+|||.+.+..+...+.. ....+|++.||.++|..+.+ .+..+.+...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ----DPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe----CCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 5789999999887654 679999999999999655444433332 34459999999999999885 5555443332
Q ss_pred CeEEEEEc----CCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 122 LRISLLVG----GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 122 l~~~~~~g----g~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
.--..+.. ..........+. +..+.++.-+.- ..+.-..+.++++||.|..-
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 11111111 011111111222 333433322111 23445678899999999974
No 278
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.26 E-value=0.1 Score=60.62 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
++|-|++++.. ....+++.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+.+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 78999999864 3568999999999999987766665554321 13457999999999999988876654
No 279
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=0.24 Score=52.26 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHhcCC----cEEEEcCCCchHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLILSGA----DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 46 ptpiQ~~aip~il~g~----dvv~~a~TGSGKT~afllp~l 82 (621)
++|+|...+..+.... -.++.||.|.|||..+..-+-
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 5789999998887542 488999999999976654433
No 280
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.26 E-value=0.54 Score=48.58 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997653
No 281
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.23 E-value=0.58 Score=44.43 Aligned_cols=130 Identities=18% Similarity=0.295 Sum_probs=77.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc------chHHHHHHHHHHHHHhhccCCCeEEEEEcC-----C
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS------PTRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~------PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg-----~ 131 (621)
+.+...+|.|||.+.+-.++..+. .|.+++|+- .+-|+ +.+..+ ++.+...-.| .
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~-----~g~~v~ivQFlKg~~~~GE~-----~~l~~~----~~~~~~~g~g~~~~~~ 73 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALG-----HGKKVGVIQFIKGAWPNGER-----AAFEPH----GVEFQVMGTGFTWETQ 73 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHH-----CCCeEEEEEEecCCcccChH-----HHHHhc----CcEEEECCCCCeecCC
Confidence 667888999999998877776654 377787761 22222 111221 2222211111 0
Q ss_pred ChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccC
Q 007018 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 132 ~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl 209 (621)
..+.... .....+....+ .+.-..+++||+||+-...+.|+ .+.+..++...|+..-+|+..-..
T Consensus 74 ~~~~~~~-----------~~~~~~~~a~~--~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 74 NREADTA-----------IAKAAWQHAKE--MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred CcHHHHH-----------HHHHHHHHHHH--HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1111000 01112222222 23345789999999998887775 457778888888888888888889
Q ss_pred cHHHHHHHHh
Q 007018 210 PSALAEFAKA 219 (621)
Q Consensus 210 ~~~l~~~~~~ 219 (621)
|+.+.+.+..
T Consensus 141 p~~l~e~AD~ 150 (173)
T TIGR00708 141 PQDLLELADL 150 (173)
T ss_pred CHHHHHhCce
Confidence 9998888754
No 282
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.20 E-value=0.31 Score=48.31 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=61.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
-+++.|++|+|||-. +-.+...+.... .+.+++++... +........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQH--PGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHC--TTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhcc--ccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 489999999999973 444444444321 35567776553 444433332221
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-ChHHHHHHHHHhcc-cCCcEEEEEccCcHHH
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-gf~~~l~~il~~l~-~~~q~ll~SATl~~~l 213 (621)
.....+.+. +..+++++||..|.+... ...+.+..++..+. .+.++|+.|...|..+
T Consensus 86 -------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011112211 346789999999998753 24556666666653 4567777776776654
No 283
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.17 E-value=0.096 Score=61.40 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
..++|-|++++.. ....+++.|..|||||.+..--+...+... .-...++|+|+.|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3589999999864 346799999999999988665555444322 1234579999999999999888777654
No 284
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.16 E-value=0.38 Score=45.27 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
...+++||||||.|... -...+..++..-|.+...+|.|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 46889999999997654 24455556666666666666665543
No 285
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.15 E-value=0.41 Score=52.70 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=29.2
Q ss_pred CcceEEEeccccccCCC-hHHHHHHHHHhccc-CCcEEEEEccCcHHHHHH
Q 007018 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALAEF 216 (621)
Q Consensus 168 ~l~~vViDEah~l~~~g-f~~~l~~il~~l~~-~~q~ll~SATl~~~l~~~ 216 (621)
++++++|||+|.+.+.. ....+..++..+.. +.++++.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999886532 33455555555433 445555454555555443
No 286
>PLN03025 replication factor C subunit; Provisional
Probab=94.14 E-value=0.48 Score=49.81 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=24.5
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
..+++|+||+|.+.... ...+..++...+....+ +++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~-il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRF-ALACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceE-EEEeC
Confidence 57899999999986532 34455555555555544 44444
No 287
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.12 E-value=0.15 Score=53.52 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=45.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~i-l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
+..+.+.|+ +++.|...+..+ ..++.+++.|+||||||. ++-.++..+... ....++++|-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~--~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ--DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc--CCCceEEEEcCCCccc
Confidence 445555665 567788887754 466889999999999995 444444443211 2345788888888873
No 288
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.10 E-value=0.11 Score=60.78 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++|-|++++.. ....+++.|..|||||.+..--+...+... .-...++|+|+-|+..|..+.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 589999999864 346799999999999988665555444322 1234579999999999999988777654
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.08 E-value=0.74 Score=49.87 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=65.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc-c-hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~-P-treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
-+++.||+|+|||......+...... .|.++.++. - .|..+.+ .++.++...++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee-------------
Confidence 37789999999998766544433222 244454443 2 2444433 344444333332211
Q ss_pred HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcc---cCCcEEEEEccCcH-HHH
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS---ENRQTLLFSATLPS-ALA 214 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~---~~~q~ll~SATl~~-~l~ 214 (621)
+..+..+...+. -.+.++||||=+-+.. +..-...+..++.... +....+.+|||... .+.
T Consensus 285 --------~~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 285 --------VKDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred --------hHHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 001122222221 2466889999776542 2333445555555442 22456888999865 555
Q ss_pred HHHHhc
Q 007018 215 EFAKAG 220 (621)
Q Consensus 215 ~~~~~~ 220 (621)
+.++.+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 555554
No 290
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.06 E-value=0.19 Score=55.45 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l 82 (621)
+-+.+.||||+|||.+....+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4477899999999987664443
No 291
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.01 E-value=0.54 Score=49.30 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=30.3
Q ss_pred CCCChHHHHHHHHHHhc----CC---cEEEEcCCCchHHHHHHHHHH
Q 007018 43 YKVPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~----g~---dvv~~a~TGSGKT~afllp~l 82 (621)
|..++|+|..++..+.. |+ -.++.|+.|+||+..+..-+-
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~ 48 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAE 48 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 45788999999987763 33 488999999999976554333
No 292
>PRK10867 signal recognition particle protein; Provisional
Probab=94.01 E-value=0.54 Score=51.38 Aligned_cols=129 Identities=20% Similarity=0.218 Sum_probs=64.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHHHH-HHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLA-LQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--treLa-~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
++++|++|||||.+..-.+. .+... .|.+++++.- .|.-+ .|+ +.++...++.+.....+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~~---~G~kV~lV~~D~~R~aa~eQL----~~~a~~~gv~v~~~~~~~-------- 166 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKKK---KKKKVLLVAADVYRPAAIEQL----KTLGEQIGVPVFPSGDGQ-------- 166 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHHh---cCCcEEEEEccccchHHHHHH----HHHHhhcCCeEEecCCCC--------
Confidence 77899999999987654443 23321 2555655543 33332 343 333333445443221111
Q ss_pred HhCCCCEEEECchHHHH-hHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHH
Q 007018 140 LAQNPDIIIATPGRLMH-HLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~-~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (621)
.|..+.. .+. ......+++||+|=+=++. +......+..+.....+..-++.++||......+.+
T Consensus 167 ----------dp~~i~~~a~~---~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a 233 (433)
T PRK10867 167 ----------DPVDIAKAALE---EAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTA 233 (433)
T ss_pred ----------CHHHHHHHHHH---HHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHH
Confidence 1222221 111 1123356777777776543 222334555555555444447777787666666666
Q ss_pred Hhc
Q 007018 218 KAG 220 (621)
Q Consensus 218 ~~~ 220 (621)
+.+
T Consensus 234 ~~F 236 (433)
T PRK10867 234 KAF 236 (433)
T ss_pred HHH
Confidence 554
No 293
>PF05729 NACHT: NACHT domain
Probab=94.01 E-value=0.42 Score=44.18 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=25.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCC-eEEEEEcchHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLAL 107 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g-~~~LIL~PtreLa~ 107 (621)
=+++.|+.|+|||... .-+...+........ ....+..+.+....
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 3789999999999754 344445544322222 23455555555444
No 294
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.99 E-value=0.19 Score=58.02 Aligned_cols=92 Identities=16% Similarity=0.146 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (621)
.|....+..+...+..+.+++|.++|+.-+..+++.+.+ .|+.+..++|+++...|..++....+|+.+|+|+|..
T Consensus 268 GKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ 347 (630)
T TIGR00643 268 GKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHA 347 (630)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHH
Confidence 354433333333345678999999999888877766654 4789999999999999999999999999999999965
Q ss_pred -ccccCCCCCCCEEEEc
Q 007018 326 -AARGIDIPLLDNVINW 341 (621)
Q Consensus 326 -aarGlDip~v~~VI~~ 341 (621)
+...+++.++.+||.-
T Consensus 348 ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 348 LIQEKVEFKRLALVIID 364 (630)
T ss_pred HHhccccccccceEEEe
Confidence 4456778888888843
No 295
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.93 E-value=0.43 Score=55.13 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
..++++||||+|.|....+.. +..++..-+.... ++|++|
T Consensus 118 gr~KVIIIDEah~LT~~A~NA-LLKtLEEPP~~v~-FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNA-MLKTLEEPPPHVK-FILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHHHH-HHHHHHhcCCCeE-EEEEEC
Confidence 467899999999987654443 3334554444443 444444
No 296
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.89 E-value=0.26 Score=53.83 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.||+|+|||...-
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997644
No 297
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.16 Score=58.52 Aligned_cols=94 Identities=19% Similarity=0.162 Sum_probs=79.1
Q ss_pred EcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 007018 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (621)
Q Consensus 245 ~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T 323 (621)
-+....|....++++.+.+..+.++||.++-+.-...+...|+.. |.++.++|+++++.+|.....+..+|+.+|+|+|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 345567889999999999999999999999988888777777654 8889999999999999999999999999999999
Q ss_pred CcccccCCCCCCCEEE
Q 007018 324 DVAARGIDIPLLDNVI 339 (621)
Q Consensus 324 dvaarGlDip~v~~VI 339 (621)
-.|- =.=++++.+||
T Consensus 304 RSAl-F~Pf~~LGLII 318 (730)
T COG1198 304 RSAL-FLPFKNLGLII 318 (730)
T ss_pred chhh-cCchhhccEEE
Confidence 7542 23455667766
No 298
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.87 E-value=0.43 Score=52.50 Aligned_cols=49 Identities=18% Similarity=0.410 Sum_probs=30.8
Q ss_pred CCcceEEEeccccccCCC-hHHHHHHHHHhc-ccCCcEEEEEccCcHHHHH
Q 007018 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~g-f~~~l~~il~~l-~~~~q~ll~SATl~~~l~~ 215 (621)
.++++++|||+|.+.... ..+.+..++..+ ..+.++++.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 467899999999986532 344555555544 2456666666566665543
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.86 E-value=0.64 Score=50.79 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=64.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc-h-HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
++++|++|||||.+..-.+.. +... .|.+++++.- + |.-+.+ .++.++...++.+.....+...
T Consensus 102 i~~vG~~GsGKTTtaakLA~~-l~~~---~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P------- 167 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYY-LKKK---QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSP------- 167 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHHh---CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCH-------
Confidence 778999999999876644443 2211 2555555543 2 322322 2333343444544332222221
Q ss_pred hCCCCEEEECchHHH-HhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHH
Q 007018 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~-~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (621)
..+. ..+.. .....+++||+|=+-++. +......+..+...+.+.--++.++||......+.++
T Consensus 168 -----------~~i~~~al~~---~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~ 233 (428)
T TIGR00959 168 -----------VEIARRALEY---AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAK 233 (428)
T ss_pred -----------HHHHHHHHHH---HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHH
Confidence 1111 11111 112345677777776543 2223445555555554444467777876666666655
Q ss_pred hc
Q 007018 219 AG 220 (621)
Q Consensus 219 ~~ 220 (621)
.+
T Consensus 234 ~f 235 (428)
T TIGR00959 234 TF 235 (428)
T ss_pred HH
Confidence 44
No 300
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.2 Score=53.15 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.++|+.||+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 369999999999998654
No 301
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.73 E-value=0.21 Score=52.37 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 37 AIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
.+...|. +++.|...+..+. .+++++++|+||||||.. +-.++..+.... .+.+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~--~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA--PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC--CCceEEEecCCcccc
Confidence 3445554 5677887776654 567899999999999974 445555543221 345788888888874
No 302
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.42 Score=52.63 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.7
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~ 81 (621)
+++.||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999998766443
No 303
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.63 E-value=0.53 Score=53.37 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=31.5
Q ss_pred cCCcceEEEeccccccCCC-hHHHHHHHHHhccc-CCcEEEEEccCcHHHH
Q 007018 166 LKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~g-f~~~l~~il~~l~~-~~q~ll~SATl~~~l~ 214 (621)
+.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999886532 34556666666544 4677765555555543
No 304
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.63 E-value=0.14 Score=50.34 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 164 ~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
++--..++||+||||.|.+ |-...+.+.+.-..+.++..|-..+
T Consensus 109 lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 4445678999999998765 3455666666656656555554444
No 305
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.61 E-value=0.53 Score=49.51 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
....+|||||+|.+... ....+..++...+....+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45678999999987542 34456666666665555444 444
No 306
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.59 E-value=0.46 Score=45.66 Aligned_cols=90 Identities=20% Similarity=0.263 Sum_probs=54.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+=.++.||+.||||...+ -...+... .|.++++..|...- ..+...+.-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl-~r~~~~~~----~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~-------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELL-RRARRYKE----AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLS-------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHH-HHHHHHHH----cCCeEEEEeccccc-------------ccccceeeeccCCc--------
Confidence 446889999999998643 22222222 47889999985321 11122222222222
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
.+-++|-.+..+++.+.... ....+++|.||||+-+
T Consensus 59 --~~A~~i~~~~~i~~~i~~~~--~~~~~~~v~IDEaQF~ 94 (201)
T COG1435 59 --SEAVVIPSDTDIFDEIAALH--EKPPVDCVLIDEAQFF 94 (201)
T ss_pred --ccceecCChHHHHHHHHhcc--cCCCcCEEEEehhHhC
Confidence 24467777778888887532 1223889999999863
No 307
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.55 E-value=0.29 Score=58.62 Aligned_cols=92 Identities=13% Similarity=0.044 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD- 324 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td- 324 (621)
.|....+..+...+..+.+++|.++|..-+...+..+.. .++.+..++|..+..++..++..+.+|+.+|+|+|.
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 455443333333344578999999999999888877765 356778899999999999999999999999999996
Q ss_pred cccccCCCCCCCEEEEc
Q 007018 325 VAARGIDIPLLDNVINW 341 (621)
Q Consensus 325 vaarGlDip~v~~VI~~ 341 (621)
.+.+.+.+.++.+||.-
T Consensus 564 ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 564 LLQKDVKFKDLGLLIID 580 (926)
T ss_pred HhhCCCCcccCCEEEee
Confidence 45567888899988743
No 308
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.52 E-value=0.79 Score=47.86 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=30.8
Q ss_pred cCCcceEEEeccccccCCChH--HHHHHHHHh-cccCCcEEEEEccCcHHHHHH
Q 007018 166 LKSVEYVVFDEADCLFGMGFA--EQLHKILGQ-LSENRQTLLFSATLPSALAEF 216 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~--~~l~~il~~-l~~~~q~ll~SATl~~~l~~~ 216 (621)
+.++++|||||.....-..+. ..+..|+.. +.....|++.|--.+..+.+.
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~ 268 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHH 268 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 457889999999754322232 344556553 345666777777665555543
No 309
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.48 E-value=0.32 Score=54.95 Aligned_cols=87 Identities=22% Similarity=0.262 Sum_probs=72.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCh----hhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-ccc
Q 007018 254 ALLYMIREHISSDQQTLIFVSTK----HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AAR 328 (621)
Q Consensus 254 ~L~~~l~~~~~~~~k~IVF~~t~----~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-aar 328 (621)
+++..+. .+..+.|+.+-++|. .|.+.+...|...|+.+..+.|++...+|+.++....+|+++|+|+|-+ ...
T Consensus 300 A~laml~-ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd 378 (677)
T COG1200 300 ALLAMLA-AIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD 378 (677)
T ss_pred HHHHHHH-HHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc
Confidence 3333333 356788999999994 6666777888888999999999999999999999999999999999976 567
Q ss_pred cCCCCCCCEEEEc
Q 007018 329 GIDIPLLDNVINW 341 (621)
Q Consensus 329 GlDip~v~~VI~~ 341 (621)
.+++.++.+||.-
T Consensus 379 ~V~F~~LgLVIiD 391 (677)
T COG1200 379 KVEFHNLGLVIID 391 (677)
T ss_pred ceeecceeEEEEe
Confidence 8899998888854
No 310
>PRK05973 replicative DNA helicase; Provisional
Probab=93.42 E-value=0.22 Score=49.83 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=60.2
Q ss_pred ccchhHHhhHHHHhhccCCCCCccCCCCCHHHHHHHHHCCCCC----------ChHHHHHHHHHHhcCCcEEEEcCCCch
Q 007018 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKV----------PTPIQRKTMPLILSGADVVAMARTGSG 72 (621)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~f~~l~L~~~l~~~l~~~g~~~----------ptpiQ~~aip~il~g~dvv~~a~TGSG 72 (621)
+-..+-+++.+.+..++. ..+.|++.+=+.-.+.||.. +||.. +..--+..|.-+++.|++|+|
T Consensus 3 ~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~G 76 (237)
T PRK05973 3 LSAPIYHLKRKAKLLSRA-----QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHG 76 (237)
T ss_pred cchHHHHHHHHHHHHHHh-----cCCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCC
Confidence 334444555444433332 35667776666666778873 55522 233334456679999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 73 KT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
||...+--+.+.+. .|.+++|++-.-. ..|+.+.+..+
T Consensus 77 KT~lalqfa~~~a~-----~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 77 KTLLGLELAVEAMK-----SGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred HHHHHHHHHHHHHh-----cCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 99866644444432 3667888875432 35555555554
No 311
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.41 E-value=0.7 Score=54.07 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=24.0
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcc-cCCcEEEEEcc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSAT 208 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~-~~~q~ll~SAT 208 (621)
..+.+|||||+|.+...+ ...|..++.... ...++++...+
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHhhccCCeEEEEEec
Confidence 346689999999988642 344444444321 23455554444
No 312
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.24 E-value=0.54 Score=53.62 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=25.5
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
...+++||||+|+|....+ ..+..++..-|.... +++.+|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~-FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVK-FLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcE-EEEEECC
Confidence 4578999999999876443 344555555554444 4444453
No 313
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.15 E-value=1.1 Score=46.95 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCcceEEEecccccc-CCChHHHHHHHHHhc------ccCCcEEEEEccCcHHHHHHHHhc
Q 007018 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQL------SENRQTLLFSATLPSALAEFAKAG 220 (621)
Q Consensus 167 ~~l~~vViDEah~l~-~~gf~~~l~~il~~l------~~~~q~ll~SATl~~~l~~~~~~~ 220 (621)
.++++||||=+-++. +....+++..+...+ .+...++.++||.......-+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 567888888887754 223344555554432 223357889999755433334443
No 314
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.76 Score=54.34 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=27.4
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
..++++||||+|+|.... ...|..++...+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 568899999999987644 334555666666555545443 533
No 315
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.12 E-value=0.28 Score=48.68 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
|.-+++.|++|||||...+--+.+.+... |.++++++-. +-..++.+.++.++-. ...
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~e-e~~~~l~~~~~s~g~d-------------~~~---- 76 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFE-EPPEELIENMKSFGWD-------------LEE---- 76 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESS-S-HHHHHHHHHTTTS--------------HHH----
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEec-CCHHHHHHHHHHcCCc-------------HHH----
Confidence 46799999999999987665555555431 5568888743 3335555555544311 010
Q ss_pred HhCCCCEEE------------ECchHHHHhHhhcCCCCcCCcceEEEeccccccC----CChHHHHHHHHHhcccCCcEE
Q 007018 140 LAQNPDIII------------ATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG----MGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 140 l~~~~~IiV------------~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~----~gf~~~l~~il~~l~~~~q~l 203 (621)
....-.+.+ ..+..+...+.. .+.-.+.+.+|||-...+.. ..+...+..+...+.....+.
T Consensus 77 ~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~ 154 (226)
T PF06745_consen 77 YEDSGKLKIIDAFPERIGWSPNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTT 154 (226)
T ss_dssp HHHTTSEEEEESSGGGST-TSCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEE
T ss_pred HhhcCCEEEEecccccccccccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 100111111 122233333322 11122337999999888732 224556677777776666677
Q ss_pred EEEccC
Q 007018 204 LFSATL 209 (621)
Q Consensus 204 l~SATl 209 (621)
++++..
T Consensus 155 llt~~~ 160 (226)
T PF06745_consen 155 LLTSEM 160 (226)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 777773
No 316
>PRK04195 replication factor C large subunit; Provisional
Probab=93.09 E-value=0.74 Score=51.33 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
.+.+++.||+|+|||.+.-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 317
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.04 E-value=0.77 Score=52.63 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l 82 (621)
.++.|+.|+|||.+..+-+-
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk 60 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAK 60 (647)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999987664443
No 318
>PTZ00293 thymidine kinase; Provisional
Probab=93.03 E-value=0.62 Score=45.69 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
|+=.++.||++||||.-.+- .+.+... .|.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHHH----cCCceEEEEecc
Confidence 45568899999999975443 3333332 467799999954
No 319
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.98 E-value=2.9 Score=39.35 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhc
Q 007018 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (621)
Q Consensus 167 ~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~ 220 (621)
...+++|+|...... +......+..+........-++.++|+-+....+.+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356778888877642 222333444443333344445666666555544554444
No 320
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.89 E-value=0.56 Score=50.67 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=22.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
..+++.|++|+|||.+.- -++..+.... .+...+++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~--~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIA--VKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 569999999999998633 3344443321 23445555
No 321
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.86 E-value=0.25 Score=61.31 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
+.|+-|.++|. ..++++++.|..|||||.+.+--++..+.... .-.++|+|+=|+..|..+.+.+.+
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV--DIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--CHhhEEEEeccHHHHHHHHHHHHH
Confidence 36899999997 46889999999999999988777776665431 224699999999999887775544
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.85 E-value=0.85 Score=48.88 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.9
Q ss_pred EEEEcCCCchHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp 80 (621)
+++.||.|+|||.....-
T Consensus 41 ~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEecCCCCCHHHHHHHH
Confidence 689999999999875543
No 323
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=1.5 Score=46.91 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~ 88 (621)
.++++.|+||+|||.+.- -+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHhh
Confidence 369999999999998743 445555543
No 324
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.81 E-value=0.94 Score=48.31 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=18.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLN 86 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~ 86 (621)
..+++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 57999999999999764 34444443
No 325
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.71 E-value=1.1 Score=45.02 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
|.-+++.|++|+|||...+--+.+.+. .|.++++++- -+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 467999999999999876655555543 3667888884 455666666666654
No 326
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.70 E-value=0.54 Score=51.79 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=37.0
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 53 aip~il~-----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
-+..++. |.-+++.|++|+|||...+..+... .. .+.++++++-. +-..|+.....+++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~-a~----~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL-AA----AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3445554 3458899999999997655333322 22 35678888854 44567666566554
No 327
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.70 E-value=0.95 Score=47.13 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=70.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc--hHHHH-HHHHHHHHHhhccCCCeEEEE-EcCCChHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP--TRDLA-LQTLKFTKELGRYTDLRISLL-VGGDSMESQFE 138 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P--treLa-~Q~~~~~~~l~~~~~l~~~~~-~gg~~~~~~~~ 138 (621)
+++.|..|+|||.+.--. ..++.. .|.++++..- -|+=| .|...|.++ .++.+..- .|++...--+
T Consensus 142 il~vGVNG~GKTTTIaKL-A~~l~~----~g~~VllaA~DTFRAaAiEQL~~w~er----~gv~vI~~~~G~DpAaVaf- 211 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKL-AKYLKQ----QGKSVLLAAGDTFRAAAIEQLEVWGER----LGVPVISGKEGADPAAVAF- 211 (340)
T ss_pred EEEEecCCCchHhHHHHH-HHHHHH----CCCeEEEEecchHHHHHHHHHHHHHHH----hCCeEEccCCCCCcHHHHH-
Confidence 678999999999875422 223332 5777776654 24433 343335554 44555442 3444332222
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCC-----cEEEE-EccCcH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENR-----QTLLF-SATLPS 211 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~-----q~ll~-SATl~~ 211 (621)
+.+.. ..-+++++|++|=|=||-. .+....|..|.+-+.+.. .+++. =||...
T Consensus 212 -----------------DAi~~---Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 212 -----------------DAIQA---AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred -----------------HHHHH---HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 22221 2345667777777777664 345666777766654433 24444 788876
Q ss_pred HHHHHHHh
Q 007018 212 ALAEFAKA 219 (621)
Q Consensus 212 ~l~~~~~~ 219 (621)
+-..-++.
T Consensus 272 nal~QAk~ 279 (340)
T COG0552 272 NALSQAKI 279 (340)
T ss_pred hHHHHHHH
Confidence 65554444
No 328
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.69 E-value=2.4 Score=48.44 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHHh---cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC-
Q 007018 46 PTPIQRKTMPLIL---SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD- 121 (621)
Q Consensus 46 ptpiQ~~aip~il---~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~- 121 (621)
|.|.=.+=|..++ ..+-.++.+|-|-|||.+..+.+...+.. .|.+++|.+|...-+.++++.++.+....+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~ 245 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQH 245 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHHHhcc
Confidence 3444444454444 44668889999999998766555533322 368899999999999998887766654221
Q ss_pred -------CeEEEEEcCCCh-HHHH-HHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHH
Q 007018 122 -------LRISLLVGGDSM-ESQF-EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (621)
Q Consensus 122 -------l~~~~~~gg~~~-~~~~-~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~ 191 (621)
-.+..+.||... .-.. .... +...|...+.+ .....-..++++|+|||.-+-. +.+..
T Consensus 246 ~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~----~~l~a 313 (752)
T PHA03333 246 KPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP----GALLS 313 (752)
T ss_pred ccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----HHHHH
Confidence 112222333210 0000 0000 11223332222 0122334568999999998755 34444
Q ss_pred HHHhcc-cCCcEEEEEccC
Q 007018 192 ILGQLS-ENRQTLLFSATL 209 (621)
Q Consensus 192 il~~l~-~~~q~ll~SATl 209 (621)
|+-.+. .+.+++++|.+-
T Consensus 314 IlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 314 VLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHccCCCceEEEeCCC
Confidence 444443 356667777764
No 329
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.63 E-value=0.51 Score=54.98 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=24.4
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHH
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (621)
...++||||+|++... +...++..+ ...++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999996532 222333333 345678888875543
No 330
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.62 E-value=1.1 Score=44.44 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=31.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.|.-+++.|++|+|||...+.-+.+.+. .|..+++++-. +.+.++....+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEcc-CCHHHHHHHHHHh
Confidence 3567999999999999765544444433 25567777642 2334444444444
No 331
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.57 E-value=0.53 Score=48.98 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=44.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
+..+.+.|. +++.|...+..++ .++.++++|+||||||.. +-.++..+... ..+.+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--CCCceEEEECCchhhc
Confidence 444555554 4556666666544 567899999999999974 34444444331 1255789999988874
No 332
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.54 E-value=0.36 Score=50.44 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=19.6
Q ss_pred CCc-EEEEcCCCchHHHHHHHHHHHHH
Q 007018 60 GAD-VVAMARTGSGKTAAFLVPMLQRL 85 (621)
Q Consensus 60 g~d-vv~~a~TGSGKT~afllp~l~~L 85 (621)
..+ +++.||.|+|||.++...+-+.+
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 345 99999999999998775544443
No 333
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.7 Score=52.62 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=24.6
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...++++||||+|+|....+.. +..++..-+....+||.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNA-LLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNA-MLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHH-HHHhhccCCCCceEEEEe
Confidence 3467899999999987654433 333444444455444444
No 334
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.53 E-value=0.56 Score=47.64 Aligned_cols=138 Identities=27% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch---HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt---reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~ 136 (621)
|.=+++.|+||.|||...+-.+...+.. .+..+++++.. .+++..+.. .. .++....+..|.-...+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~----~~~~vly~SlEm~~~~l~~R~la---~~---s~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALN----GGYPVLYFSLEMSEEELAARLLA---RL---SGVPYNKIRSGDLSDEE 88 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHT----TSSEEEEEESSS-HHHHHHHHHH---HH---HTSTHHHHHCCGCHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHh----cCCeEEEEcCCCCHHHHHHHHHH---Hh---hcchhhhhhccccCHHH
Confidence 3458899999999998766555555543 25789999874 333333222 21 12222222223322333
Q ss_pred HHH-------HhCCCCEEEECch----HHHHhHhhcCCCCcCCcceEEEeccccccCC----ChHHHHHHHHHhcc----
Q 007018 137 FEE-------LAQNPDIIIATPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----GFAEQLHKILGQLS---- 197 (621)
Q Consensus 137 ~~~-------l~~~~~IiV~Tpg----rl~~~l~~~~~~~l~~l~~vViDEah~l~~~----gf~~~l~~il~~l~---- 197 (621)
+.. +...+-++..+|+ .+...+..... ....+++||||=.|.+... +-...+..+...+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 222 2333333344443 44444443211 1268899999999987753 23445555544332
Q ss_pred -cCCcEEEEEcc
Q 007018 198 -ENRQTLLFSAT 208 (621)
Q Consensus 198 -~~~q~ll~SAT 208 (621)
.+..+++.|..
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 24555555554
No 335
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.47 E-value=0.85 Score=52.42 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...+++||||+|.+....+ ..+..++..-+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998764332 23444555545555444443
No 336
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.41 E-value=0.9 Score=51.85 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=24.5
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
....++|||||+|.+.... ...+...+..-|....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999986533 233444455545555555443
No 337
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.36 E-value=0.57 Score=52.46 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=25.2
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
.+.+++||||+|.|....+. .+..++..-|+...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 46789999999998765443 3444556555555544433
No 338
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.31 E-value=0.89 Score=45.41 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.|.-+++.|++|+|||...+--+.+.+.. .|..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeC
Confidence 45668999999999997555444444333 2667899884
No 339
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.22 E-value=0.86 Score=48.94 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=36.1
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 53 aip~il~-----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
-+..++. |.-+++.|++|+|||...+..+. .+.. .+.++++++-. +-..|+.....+++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~-~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA-RLAK----RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH-HHHh----cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3445554 35588999999999986553333 2222 24578888765 33456655555554
No 340
>PF13173 AAA_14: AAA domain
Probab=92.21 E-value=1.2 Score=39.91 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=24.8
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
.-.+|+|||+|.+- ++...+..+.... .+.++++ |+.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~-tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIIL-TGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEE-Ecc
Confidence 45689999999985 4677777777755 3444444 444
No 341
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.21 E-value=0.43 Score=47.15 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
+++++||.|.|||..+-
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 69999999999997544
No 342
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.10 E-value=0.3 Score=57.42 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
..++|-|++++.. ....+++.|..|||||.+..--+...+.... -...++|+++-|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 3589999999864 3467999999999999887666665554321 123579999999999999888776653
No 343
>PRK06904 replicative DNA helicase; Validated
Probab=92.07 E-value=1.9 Score=47.95 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=58.8
Q ss_pred hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcC-CChHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQ 136 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg-~~~~~~ 136 (621)
..|.=+++.|+||.|||...+-.+...... .|..+++++.. .=..|+...+- +...++....+..| .-....
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~----~g~~Vl~fSlE-Ms~~ql~~Rll--a~~s~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA----SEKPVLVFSLE-MPAEQIMMRML--ASLSRVDQTKIRTGQNLDQQD 291 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHH--HhhCCCCHHHhccCCCCCHHH
Confidence 344558889999999997544333322222 36678888775 22344433221 12223333333333 212222
Q ss_pred H-------HHHhCCCCEEEE-----CchHHHHhHhhcCCCCcCCcceEEEeccccccCC
Q 007018 137 F-------EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (621)
Q Consensus 137 ~-------~~l~~~~~IiV~-----Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~ 183 (621)
+ ..+...+++.|- |+..+...+.+.. .....+++||||=.+.+...
T Consensus 292 ~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 292 WAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCCC
Confidence 2 223334556663 3344443333211 11125889999988877543
No 344
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.95 E-value=2 Score=47.04 Aligned_cols=41 Identities=27% Similarity=0.219 Sum_probs=27.1
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+..|.=+++.|++|+|||...+--+...... .|..+++++.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSl 231 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSL 231 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEEC
Confidence 3345568899999999997655444333222 3667888874
No 345
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=1.5 Score=48.62 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l 82 (621)
+.+++.||.|+|||.++.+.+-
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 3589999999999987664433
No 346
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.3 Score=51.71 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=72.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il------~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~ 95 (621)
..+|+..=|++.+-+.|...- +.... --+++++.||+|+|||++.
T Consensus 351 k~pl~~ViL~psLe~Rie~lA-----------~aTaNTK~h~apfRNilfyGPPGTGKTm~A------------------ 401 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLA-----------IATANTKKHQAPFRNILFYGPPGTGKTMFA------------------ 401 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHH-----------HHhcccccccchhhheeeeCCCCCCchHHH------------------
Confidence 445777778888877775432 11111 1268999999999999742
Q ss_pred EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcc-eEEE
Q 007018 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE-YVVF 174 (621)
Q Consensus 96 ~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~-~vVi 174 (621)
++++...|+..++++||+--+--... |+--..++++-.. ++-+ ++.|
T Consensus 402 ------------------relAr~SGlDYA~mTGGDVAPlG~qa--------VTkiH~lFDWakk------S~rGLllFI 449 (630)
T KOG0742|consen 402 ------------------RELARHSGLDYAIMTGGDVAPLGAQA--------VTKIHKLFDWAKK------SRRGLLLFI 449 (630)
T ss_pred ------------------HHHHhhcCCceehhcCCCccccchHH--------HHHHHHHHHHHhh------cccceEEEe
Confidence 23334567888888998743211111 1222234443322 1112 6889
Q ss_pred eccccccC----CC----hHHHHHHHHHhcc-cCCcEEEEEccCcH
Q 007018 175 DEADCLFG----MG----FAEQLHKILGQLS-ENRQTLLFSATLPS 211 (621)
Q Consensus 175 DEah~l~~----~g----f~~~l~~il~~l~-~~~q~ll~SATl~~ 211 (621)
||||-.+. .+ -...++.++-+.. ..+.++|.=||--+
T Consensus 450 DEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 450 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 495 (630)
T ss_pred hhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence 99997662 11 2233444444433 35677888888533
No 347
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=1.5 Score=50.12 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=15.9
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~ 81 (621)
.+++.|+.|+|||.+..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765443
No 348
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=0.21 Score=52.59 Aligned_cols=59 Identities=25% Similarity=0.451 Sum_probs=36.7
Q ss_pred cCCCCCccCCCCCHHHHHHHHHC------CCC--------CC-hHHHHHH-----HHHHhcC-----CcEEEEcCCCchH
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRK------GYK--------VP-TPIQRKT-----MPLILSG-----ADVVAMARTGSGK 73 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~------g~~--------~p-tpiQ~~a-----ip~il~g-----~dvv~~a~TGSGK 73 (621)
+.+...|..++....+..+|+.- +++ .- .-++... +|....| +.+++.||.|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 44567899999998888887751 111 00 1111111 2333344 6799999999999
Q ss_pred HHHH
Q 007018 74 TAAF 77 (621)
Q Consensus 74 T~af 77 (621)
|+.+
T Consensus 259 TlLA 262 (491)
T KOG0738|consen 259 TLLA 262 (491)
T ss_pred HHHH
Confidence 9743
No 349
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.62 E-value=0.59 Score=50.69 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=34.4
Q ss_pred cCCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (621)
.+..-+|+++|--+...+.|... -+..|.-++... +-..+.+++.||+|+|||+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 34456788887666666665542 233333222222 123578999999999999854
No 350
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.51 E-value=0.71 Score=56.64 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
..|....+..+...+..+.+++|.++|..-+..++..+... ++.+..++|..+..++..++....+|..+|+|+|.
T Consensus 632 sGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp 711 (1147)
T PRK10689 632 FGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711 (1147)
T ss_pred cCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECH
Confidence 34554333222223346789999999999999888877653 45677899999999999999999999999999995
Q ss_pred -cccccCCCCCCCEEEE
Q 007018 325 -VAARGIDIPLLDNVIN 340 (621)
Q Consensus 325 -vaarGlDip~v~~VI~ 340 (621)
.+...+++.++.++|.
T Consensus 712 ~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 712 KLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred HHHhCCCCHhhCCEEEE
Confidence 4455567778888774
No 351
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.46 E-value=0.6 Score=52.05 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCCccCCC-CCHHHHHHHHH---CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q 007018 22 SGGFESLN-LSPNVFRAIKR---KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 22 ~~~f~~l~-L~~~l~~~l~~---~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (621)
.-+|+++| |++. ++.|.. ..+..|..++...++ ..+.+++.||+|+|||..
T Consensus 178 ~v~~~dIgGl~~~-i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 178 DVTYADIGGLDSQ-IEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCHHHcCChHHH-HHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH
Confidence 45788887 5443 333322 223333222222221 246799999999999985
No 352
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.35 E-value=1.2 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=16.7
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l 82 (621)
.+++.||.|+|||.++.+.+-
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999987765443
No 353
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.34 E-value=1 Score=48.67 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=33.7
Q ss_pred CcceEEEeccccccCC-ChHHHHHHHHHhccc-CCcEEEEEccCcHHHH
Q 007018 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (621)
Q Consensus 168 ~l~~vViDEah~l~~~-gf~~~l~~il~~l~~-~~q~ll~SATl~~~l~ 214 (621)
++++++||.++.+... ...+.+-.++..+.. +.|+++.|-.+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999998764 456666666666644 4477777777776654
No 354
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.34 E-value=1.3 Score=46.69 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHhc--CC---cEEEEcCCCchHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLILS--GA---DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 46 ptpiQ~~aip~il~--g~---dvv~~a~TGSGKT~afllp~l 82 (621)
++|+|..++..+.. ++ -.++.||.|.|||..+..-+-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 36888888888773 32 488999999999987654433
No 355
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=91.25 E-value=1.3 Score=41.97 Aligned_cols=141 Identities=24% Similarity=0.292 Sum_probs=68.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH-HHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre-La~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
+.+.--.|=|||.|++--++..+. .|.+++|+-=-.- -..-=...++.+ .++.+. ..|.........-
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G-----~G~rV~ivQFlKg~~~~GE~~~l~~l---~~~~~~--~~g~~f~~~~~~~- 74 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAG-----HGMRVLIVQFLKGGRYSGELKALKKL---PNVEIE--RFGKGFVWRMNEE- 74 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHC-----TT--EEEEESS--SS--HHHHHHGGG---T--EEE--E--TT----GGGH-
T ss_pred EEEEeCCCCCchHHHHHHHHHHHh-----CCCEEEEEEEecCCCCcCHHHHHHhC---CeEEEE--EcCCcccccCCCc-
Confidence 455666899999998887776654 3778888743322 000001122222 222222 1221110000000
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
..+ .......++...+ .+.-..+++||+||+-...+.|+ .+.+..++...|...-+|+.--.+|+.+.+.+..
T Consensus 75 -~~~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ADl 149 (172)
T PF02572_consen 75 -EED--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAADL 149 (172)
T ss_dssp -HHH--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-SE
T ss_pred -HHH--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCCe
Confidence 000 0011112222222 23356789999999998887775 5677888888888888888888889998887753
No 356
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.24 E-value=0.28 Score=51.96 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 56 ~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
.+..+++++++|+||||||.. +-.++..+. ...+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~-----~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP-----PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC-----CCCCEEEECCCcccc
Confidence 345678999999999999974 333333332 245688888888874
No 357
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.22 E-value=2.2 Score=42.48 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
|.-+++.|++|+|||.....-+.+.+. .|.+++++.=... ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 456889999999999766544444433 3667888776433 345555555554
No 358
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=1.2 Score=52.55 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
...+++||||+|+|.... ...+..++..-|....+|+ ..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFIL-aTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLL-ATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEE-ECCCch
Confidence 467899999999986432 2333344444444444444 345433
No 359
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.21 E-value=1.3 Score=51.92 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=27.6
Q ss_pred cceEEEeccccccCCCh----HHHHHHHHHhcccCCcEEEEEccCcHHH
Q 007018 169 VEYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSAL 213 (621)
Q Consensus 169 l~~vViDEah~l~~~gf----~~~l~~il~~l~~~~q~ll~SATl~~~l 213 (621)
-.+|+|||+|.+...|- ...+..++..+-....+.+..||-++..
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999999975442 2344445554434455667777755543
No 360
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=91.18 E-value=0.79 Score=49.54 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHCCCCC--ChHHHH-----HHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKV--PTPIQR-----KTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~--ptpiQ~-----~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
..+|+-=-|.+.||.- +++-|+ ..+|.+-.+.+++..||+|+|||-.|.
T Consensus 172 ~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 4455555566678862 232222 223677788999999999999997665
No 361
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.17 E-value=1.2 Score=47.58 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=25.7
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
.....+|||||||.|.... ...+..++..-|....++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999986543 334555556545555555554
No 362
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.16 E-value=1.5 Score=48.60 Aligned_cols=146 Identities=12% Similarity=0.158 Sum_probs=84.5
Q ss_pred CChHHHHHHHHHHhc------C----CcEEEEcCCCchHHHHHHHHHHH-HHhhhCCCCCeEEEEEcchHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILS------G----ADVVAMARTGSGKTAAFLVPMLQ-RLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (621)
Q Consensus 45 ~ptpiQ~~aip~il~------g----~dvv~~a~TGSGKT~afllp~l~-~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~ 113 (621)
.+-|+|.-++-.+.. | +.+++.-|-+-|||......+.. .|..+ ..|....|++|+.+-+.+.+..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 578999999998883 1 24778888888999655433333 33333 46888999999999999888877
Q ss_pred HHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECch---HHHHhHh-hcCCCCcCCcceEEEeccccccCCChHHHH
Q 007018 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG---RLMHHLS-EVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (621)
Q Consensus 114 ~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpg---rl~~~l~-~~~~~~l~~l~~vViDEah~l~~~gf~~~l 189 (621)
+....... +... ...-...-...+.+ ..+..+. .....+-.+..+.||||.|.....+ ..+
T Consensus 139 r~mv~~~~----------~l~~---~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 139 RDMVKRDD----------DLRD---LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHhCc----------chhh---hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 66542221 0000 00011111111111 1111111 1112344566789999999976653 556
Q ss_pred HHHHHhcc--cCCcEEEEEc
Q 007018 190 HKILGQLS--ENRQTLLFSA 207 (621)
Q Consensus 190 ~~il~~l~--~~~q~ll~SA 207 (621)
..+...+. ++.+++..|.
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 66665553 3556666655
No 363
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.01 E-value=2.2 Score=47.71 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l 82 (621)
.+++.||.|+|||.++.+-+-
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987664443
No 364
>PRK10436 hypothetical protein; Provisional
Probab=90.88 E-value=0.68 Score=51.09 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 47 TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 47 tpiQ~~aip~il~--g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
.+.|.+.+..++. +.-+++.||||||||... ..++..+.. .+.+++-|--..|
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~----~~~~i~TiEDPvE 257 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT----AQINICSVEDPVE 257 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC----CCCEEEEecCCcc
Confidence 3455566655543 335889999999999864 345555432 2344555444444
No 365
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.76 E-value=1.2 Score=45.46 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.|.-+++.|++|+|||...+--+.+.+. .|.++++++-.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEec
Confidence 3466899999999999865544443332 36678888843
No 366
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.62 E-value=1.4 Score=48.35 Aligned_cols=70 Identities=19% Similarity=0.153 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHHH----HhcC--------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCe
Q 007018 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMPL----ILSG--------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (621)
Q Consensus 27 ~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~----il~g--------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~ 94 (621)
.+|.+++-+......|...-.|.-.+.+.. +.+- ..+++.||.|||||..+. .+...+ .-+
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S--~FP 565 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSS--DFP 565 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhc--CCC
Confidence 467888888888877766544444443321 1111 359999999999997544 222211 345
Q ss_pred EEEEEcchH
Q 007018 95 RALILSPTR 103 (621)
Q Consensus 95 ~~LIL~Ptr 103 (621)
.+=|++|..
T Consensus 566 FvKiiSpe~ 574 (744)
T KOG0741|consen 566 FVKIISPED 574 (744)
T ss_pred eEEEeChHH
Confidence 677777753
No 367
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=1.3 Score=50.76 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=24.8
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
..++++||||+|+|....|.. +..++..-|....+ +|.+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~Na-LLKtLEEPP~~~~f-IL~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNA-MLKTLEEPPEYLKF-VLATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHHHHH-HHHhcccCCCCeEE-EEEECCch
Confidence 467899999999987654433 33333433434433 44445433
No 368
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.59 E-value=2.1 Score=48.76 Aligned_cols=44 Identities=25% Similarity=0.315 Sum_probs=26.0
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
....+++||||+|.|....+. .+..++..-|....+|+.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe-CChH
Confidence 356789999999998754333 3344455444444444433 5443
No 369
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.51 E-value=1.6 Score=46.20 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHhc--C---CcEEEEcCCCchHHHHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLILS--G---ADVVAMARTGSGKTAAFLVPMLQRL 85 (621)
Q Consensus 46 ptpiQ~~aip~il~--g---~dvv~~a~TGSGKT~afllp~l~~L 85 (621)
++|+|...+..+.. + .-.++.||.|.||+..+..-+-..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 35778888877654 3 2488999999999987654443333
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.45 E-value=0.71 Score=48.79 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=31.2
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
+..+++++++|+||||||.. +-.++..+. ...+++++--+.||..
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip-----~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP-----AIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC-----CCCeEEEecCCCcccc
Confidence 34678999999999999974 444444432 2457787777777644
No 371
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=2 Score=46.48 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=26.3
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHH
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (621)
....+++||||+|+|.... ...+..++..-|... ++++.+|-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 3567899999999986542 233444444434444 45555554433
No 372
>PRK13764 ATPase; Provisional
Probab=90.33 E-value=0.56 Score=53.21 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=28.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
.++.++++|+||||||.. +..++..+.. .+..++.+--.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~----~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD----MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh----CCCEEEEECCCccc
Confidence 467899999999999974 4555555543 34445566556666
No 373
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.32 E-value=0.42 Score=52.34 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhcCCc--EEEEcCCCchHHHHHHHHHHHHHhh
Q 007018 47 TPIQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQ 87 (621)
Q Consensus 47 tpiQ~~aip~il~g~d--vv~~a~TGSGKT~afllp~l~~L~~ 87 (621)
.|.|...+..++.... +++.||||||||.. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6778888877776644 77899999999986 4455555543
No 374
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.31 E-value=2.9 Score=46.46 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp 80 (621)
+++.||+|+|||..+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999876543
No 375
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.31 E-value=2.6 Score=47.52 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=23.8
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
....++||||+|++.... ...+...+..-|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 466899999999976533 334445555545455444433
No 376
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.5 Score=49.53 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...+++||||+|.+....+. .+...+..-|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~n-aLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFN-AMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHHH-HHHHHHhCCCCCEEEEEEe
Confidence 46789999999998754333 3344444444455444443
No 377
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.27 E-value=1.4 Score=47.38 Aligned_cols=130 Identities=20% Similarity=0.190 Sum_probs=80.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc-h-HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-T-RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P-t-reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
++..|--|||||.+..-.+. +|.+ .+.++++++. + |--|. +.++.++...++.+.....+.+.-+-
T Consensus 103 ImmvGLQGsGKTTt~~KLA~-~lkk----~~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~Pv~I---- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAK-YLKK----KGKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKDPVEI---- 170 (451)
T ss_pred EEEEeccCCChHhHHHHHHH-HHHH----cCCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCCHHHH----
Confidence 67789999999987653332 3333 3556665554 3 33333 35666666666665544222221111
Q ss_pred hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
+ ..-+. .+....+++||+|=|-|+- +...-..+.+|-..+.+.--++..=|+........+++
T Consensus 171 --------a-----k~al~---~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 171 --------A-----KAALE---KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred --------H-----HHHHH---HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 0 11111 1334457889999888765 44466788888888888877888889988888887776
Q ss_pred c
Q 007018 220 G 220 (621)
Q Consensus 220 ~ 220 (621)
+
T Consensus 235 F 235 (451)
T COG0541 235 F 235 (451)
T ss_pred H
Confidence 6
No 378
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.26 E-value=0.33 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=15.7
Q ss_pred EEecCcccccCCCCCCCEEEEcC
Q 007018 320 LIVTDVAARGIDIPLLDNVINWD 342 (621)
Q Consensus 320 LV~TdvaarGlDip~v~~VI~~d 342 (621)
-+.|---+.|+.++.+.+|+.-+
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~~ 206 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLSD 206 (234)
T ss_pred ceechHHcceEEeCCEEEEECCC
Confidence 35666678899988876655433
No 379
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.24 E-value=0.87 Score=51.80 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=34.9
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 38 IKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
|...|| .|.|.+.+..++.. .-+++.||||||||... ..++..+.. ...+++-+-...|
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~----~~~~i~tiEdpvE 355 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNT----EEVNISTAEDPVE 355 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCC----CCceEEEecCCce
Confidence 445554 45566666665543 34789999999999764 445555532 2334554444444
No 380
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.11 E-value=0.69 Score=49.40 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=19.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHh
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLN 86 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~ 86 (621)
.+.-+++.||||||||.. +-.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 456799999999999975 344555544
No 381
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.08 E-value=0.89 Score=46.40 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHHHH-hcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 50 QRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 50 Q~~aip~i-l~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
..+.+... ..+..+++.|+||||||.. +-.++..+.. ...+++++-.+.|+..
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~----~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPP----EDERIVTIEDPPELRL 169 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHT----TTSEEEEEESSS-S--
T ss_pred HHHHHhhccccceEEEEECCCccccchH-HHHHhhhccc----cccceEEeccccceee
Confidence 33344333 3467899999999999975 4455555543 2467888888887633
No 382
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.08 E-value=3.1 Score=44.15 Aligned_cols=138 Identities=19% Similarity=0.232 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHhcCCc------EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc-----hHHHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLILSGAD------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-----TRDLALQTLKFTK 114 (621)
Q Consensus 46 ptpiQ~~aip~il~g~d------vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P-----treLa~Q~~~~~~ 114 (621)
.+..|...+..++..++ +++.|.+|||||..-. .+.++. ....+++++ .+-|-+++.....
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-----~~l~~~---n~~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-----QLLRKL---NLENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-----HHHhhc---CCcceeeehHHhccHHHHHHHHHHHhc
Confidence 56788888888887765 4899999999998632 332222 223555555 2333333333221
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCC-cCCcceEEEeccccccCCC--hHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMS-LKSVEYVVFDEADCLFGMG--FAEQLHK 191 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~-l~~l~~vViDEah~l~~~g--f~~~l~~ 191 (621)
.+-..|...+..++.+.. +...+...+... ...--++|+|-||.+-+++ ....+-.
T Consensus 82 ----------~~d~dg~~~~~~~en~~d-----------~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~ 140 (438)
T KOG2543|consen 82 ----------LADKDGDKVEGDAENFSD-----------FIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFR 140 (438)
T ss_pred ----------cCCCchhhhhhHHHHHHH-----------HHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHH
Confidence 000111111211122211 222222211111 1234589999999999876 2233333
Q ss_pred HHHhcccCCcEEEEEccCcHH
Q 007018 192 ILGQLSENRQTLLFSATLPSA 212 (621)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~ 212 (621)
.-..++...-.+.+|+++++.
T Consensus 141 L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 141 LYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHhCCCceEEEEeccccHH
Confidence 334445555678899997665
No 383
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.03 E-value=3.3 Score=43.03 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=24.7
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...+||+||+|.+... ....+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987543 2345666666656666555544
No 384
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=0.49 Score=56.21 Aligned_cols=138 Identities=21% Similarity=0.222 Sum_probs=77.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCC---CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYK---VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~---~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LI 98 (621)
.-+|++.|....++..|+++-.. .|.-+|... |-.-+.++.++|.|+|||+..- .|..+....+.++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~---itpPrgvL~~GppGTGkTl~ar-----aLa~~~s~~~~kis- 331 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN---ITPPRGVLFHGPPGTGKTLMAR-----ALAAACSRGNRKIS- 331 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc---cCCCcceeecCCCCCchhHHHH-----hhhhhhcccccccc-
Confidence 45899999999999999887433 222222211 2234779999999999998533 22211111111111
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCC---EEEECchHHHHhHhhcCCCCcCCcceEEEe
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPD---IIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~---IiV~Tpgrl~~~l~~~~~~~l~~l~~vViD 175 (621)
.+ . .+++| --|+..+|=+.++-+ ...-....++-||
T Consensus 332 --------ff----m---------------------------rkgaD~lskwvgEaERqlrllFe--eA~k~qPSIIffd 370 (1080)
T KOG0732|consen 332 --------FF----M---------------------------RKGADCLSKWVGEAERQLRLLFE--EAQKTQPSIIFFD 370 (1080)
T ss_pred --------hh----h---------------------------hcCchhhccccCcHHHHHHHHHH--HHhccCceEEecc
Confidence 11 0 11111 124555555555543 2334456789999
Q ss_pred ccccccC-------CC---hHHHHHHHHHhcccCCcEEEEEccC
Q 007018 176 EADCLFG-------MG---FAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 176 Eah~l~~-------~g---f~~~l~~il~~l~~~~q~ll~SATl 209 (621)
|.|-+.- .- ....+..++..++..-|+++.+||.
T Consensus 371 eIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 371 EIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 9995431 11 2223344455566778999999995
No 385
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=90.01 E-value=0.34 Score=55.04 Aligned_cols=64 Identities=22% Similarity=0.441 Sum_probs=52.6
Q ss_pred HHHHhcCCceEEEecCcccccCCCCCCCEE--------EEcCCCCChhHHHHHhcccCCCCC-ccEEEEEecc
Q 007018 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNV--------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (621)
Q Consensus 309 l~~F~~g~~~ILV~TdvaarGlDip~v~~V--------I~~d~P~s~~~~~qrvGR~gR~G~-~G~~i~~v~~ 372 (621)
-++|..|+..|-|-..+++-||-+..-.-| |-+.+||+.+.-+|..||+.|..+ .+--|+|+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 467889999999999999999998765444 567899999999999999999876 4666777654
No 386
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.99 E-value=1.7 Score=48.70 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp 80 (621)
+++.||.|+|||.+..+.
T Consensus 39 ~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999876543
No 387
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.95 E-value=0.44 Score=53.59 Aligned_cols=44 Identities=25% Similarity=0.334 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHH----hcCCcEEEEcCCCchHHHHHHHHHHHHHhhh
Q 007018 45 VPTPIQRKTMPLI----LSGADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (621)
Q Consensus 45 ~ptpiQ~~aip~i----l~g~dvv~~a~TGSGKT~afllp~l~~L~~~ 88 (621)
+|+.||...+..+ -+|+-.++.+|||+|||+..+-.++..|..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 4999999887654 4688899999999999999888888887654
No 388
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.94 E-value=1.8 Score=50.91 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=31.6
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (621)
..-+|++++--...++.|.+. -+..|.-++... +..++.+++.||+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 456788887666666665442 122222111111 12457899999999999975
No 389
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=89.91 E-value=4.8 Score=43.08 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=28.4
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEccCcHH
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSA 212 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~~~ 212 (621)
+...+|.|||.|-- +.+-.--+..++..+ ..+.-++..|.+.|..
T Consensus 126 ~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 126 KESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred hcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 45668999999853 333233444444444 4566778888887765
No 390
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=89.82 E-value=0.22 Score=53.85 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=37.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
++++.|+||||||.++++|.+-. . +..++|+-|--|+...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C----CCCEEEEccchhHHHHHHHHHHHc
Confidence 47899999999999999886543 1 346999999999998877665544
No 391
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.79 E-value=1.8 Score=49.31 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=25.7
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
....+++||||+|.+.... ...+..++..-|.... ++|.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~-fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVK-FIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeE-EEEEeCChh
Confidence 3567899999999876533 2344444554444443 444445443
No 392
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.66 E-value=2.1 Score=40.96 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=23.5
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
.....+|||||+|++.... ...+...+...++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCe-EEEEEEC
Confidence 3567899999999986532 333444444433333 3444444
No 393
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=89.50 E-value=1.2 Score=46.73 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=25.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
..++++||.|+|||..+-+ |.........+-+=++-|..-+..+
T Consensus 163 pSmIlWGppG~GKTtlArl-----ia~tsk~~SyrfvelSAt~a~t~dv 206 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARL-----IASTSKKHSYRFVELSATNAKTNDV 206 (554)
T ss_pred CceEEecCCCCchHHHHHH-----HHhhcCCCceEEEEEeccccchHHH
Confidence 3699999999999975332 2222222334555556555444443
No 394
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=89.48 E-value=1.7 Score=45.29 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=69.4
Q ss_pred HHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCCh-HHHHHHH-hCCCCEEEECchHHHHhH
Q 007018 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM-ESQFEEL-AQNPDIIIATPGRLMHHL 158 (621)
Q Consensus 81 ~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~-~~~~~~l-~~~~~IiV~Tpgrl~~~l 158 (621)
.+-++.+.....|..+||.+|+++..+|+.+.+++-. ...+++.+++.+.. .+....+ .+..+|+|+|. .|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----IL 365 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----IL 365 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hh
Confidence 3333333333467889999999999999999885532 23444555554433 3344444 35678999984 44
Q ss_pred hhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc
Q 007018 159 SEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (621)
Q Consensus 159 ~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l 196 (621)
++ ...+.+++++|++--|+++.. +.+..|..+.
T Consensus 366 ER--GVTfp~vdV~Vlgaeh~vfTe---saLVQIaGRv 398 (441)
T COG4098 366 ER--GVTFPNVDVFVLGAEHRVFTE---SALVQIAGRV 398 (441)
T ss_pred hc--ccccccceEEEecCCcccccH---HHHHHHhhhc
Confidence 44 678999999999999998763 4555665554
No 395
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=89.47 E-value=2.5 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~ 81 (621)
-.+++||.|+|||.+.-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766444
No 396
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.40 E-value=1.2 Score=48.42 Aligned_cols=140 Identities=17% Similarity=0.086 Sum_probs=80.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 33 ~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
.+++.|+++ +..+-..|.++.=..-.|+. .+.|-.|||||.....-+.+. |...+.-+++|-+-|+.|+.|+...
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l---h~knPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL---HSKNPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH---hcCCCCceEEEEeehHHHHHHHHHH
Confidence 455555542 33455567777655556666 778889999998654433322 3445677899999999999999887
Q ss_pred HHHhhcc-----C---CCeEEEEEcCCChHHH---HHHHhCCCCEEEECc-----hHHHHhHhhcCCCCcCCcceEEEec
Q 007018 113 TKELGRY-----T---DLRISLLVGGDSMESQ---FEELAQNPDIIIATP-----GRLMHHLSEVEDMSLKSVEYVVFDE 176 (621)
Q Consensus 113 ~~~l~~~-----~---~l~~~~~~gg~~~~~~---~~~l~~~~~IiV~Tp-----grl~~~l~~~~~~~l~~l~~vViDE 176 (621)
+.+|... . .+.+..-.||...+.. +.....-..+-++-. +....++.. .-...-+++|.|||
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE 303 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecc
Confidence 7776421 1 1222223355443322 222222223333222 122233332 22367789999999
Q ss_pred ccc
Q 007018 177 ADC 179 (621)
Q Consensus 177 ah~ 179 (621)
++.
T Consensus 304 ~QD 306 (660)
T COG3972 304 SQD 306 (660)
T ss_pred ccc
Confidence 987
No 397
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.37 E-value=1.8 Score=49.42 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=16.8
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l 82 (621)
.+++.||.|+|||.+..+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999987764443
No 398
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.33 E-value=0.92 Score=52.53 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=39.3
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
+.-++|+|.-|++.+......+..++++.|++-..++.|=+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 33589999999999999999999999999999999999888654
No 399
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.32 E-value=1.5 Score=44.07 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=41.2
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHH---HHHHHhcCC-cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRK---TMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~---aip~il~g~-dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
+|+.+|++..+-..+. ..+.+.++. +-+.+..|+ -+.++|+.|||||..-- .+++.+.. +..++|+
T Consensus 15 g~~~~pf~~~~~~~~~----~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~-----d~~~~v~ 84 (269)
T COG3267 15 GFSRLPFSWDIQPGLD----YWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE-----DQVAVVV 84 (269)
T ss_pred hhccCCCccchhhhhh----hhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC-----CceEEEE
Confidence 5666666654444432 123333332 224455666 57789999999998755 44444432 3334445
Q ss_pred cchHHHHHHH
Q 007018 100 SPTRDLALQT 109 (621)
Q Consensus 100 ~PtreLa~Q~ 109 (621)
.|-..+..+.
T Consensus 85 i~~~~~s~~~ 94 (269)
T COG3267 85 IDKPTLSDAT 94 (269)
T ss_pred ecCcchhHHH
Confidence 5544444443
No 400
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.29 E-value=2.4 Score=45.41 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=25.4
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
.....++||||+|.+.... ...+...+..-|....+|++|..
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECC
Confidence 4567899999999875432 33444555554445545554444
No 401
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.28 E-value=1.7 Score=39.93 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=32.7
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHH
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
..+-+++++||--.-++......+.+++..+. .+++++.--+..+..
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHHHH
Confidence 44667899999998888877888888887762 356665544343333
No 402
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.18 E-value=2.5 Score=42.72 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (621)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34788999999999999963
No 403
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=89.11 E-value=1.5 Score=52.60 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec-C
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-D 324 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T-d 324 (621)
.|...-+...-.....+.|+.|.|+|---|+.-++-+++ ..+.+..+..-.+..+.+.+++...+|+++|+|+| .
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr 706 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR 706 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH
Confidence 355555555545556789999999996666655555554 46667777777788899999999999999999999 5
Q ss_pred cccccCCCCCCCEEE
Q 007018 325 VAARGIDIPLLDNVI 339 (621)
Q Consensus 325 vaarGlDip~v~~VI 339 (621)
.+..++-+.++.++|
T Consensus 707 LL~kdv~FkdLGLlI 721 (1139)
T COG1197 707 LLSKDVKFKDLGLLI 721 (1139)
T ss_pred hhCCCcEEecCCeEE
Confidence 788889999998887
No 404
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.95 E-value=0.39 Score=53.32 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=39.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++++.|+||||||..+++|.+-. . .+ .++|.-|--||...+....++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~---~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y---PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c---cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999997632 1 12 68999999999888777666654
No 405
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=88.93 E-value=6.9 Score=45.34 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.|.++||+|+|+..+..+.+.+.+. ++.+..++|+....+.... + .+..+|+||| +.+. ..+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~--rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc--CCeeeC
Confidence 4788999999999999988888765 4788888887665443322 2 3568899988 2344 378999
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcc--cCCcEEEEEccCcHHHH
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSALA 214 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~--~~~q~ll~SATl~~~l~ 214 (621)
.+++||+-+++...-......+..++.+.. ....++++--..+..+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ 558 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH
Confidence 999999888877433322334444433322 12234555444444433
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.91 E-value=4.4 Score=47.69 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.++++.|++|+|||...-
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999998643
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.86 E-value=0.65 Score=44.63 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.5
Q ss_pred HHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHH
Q 007018 38 IKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~af 77 (621)
|-+.|+ .++.|...+...+ .|..+++.|+||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 344454 6677888887655 5678999999999999753
No 408
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=88.85 E-value=1.2 Score=43.23 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=15.2
Q ss_pred EEEEcCCCchHHHHHHHH-HHHHHh
Q 007018 63 VVAMARTGSGKTAAFLVP-MLQRLN 86 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp-~l~~L~ 86 (621)
.++.|.+|||||+-.+.- ++..+.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHh
Confidence 478999999999877655 444443
No 409
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.84 E-value=0.97 Score=48.47 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
+.-+++.||||||||.. +..++..+.... .+.+++.+--..|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~--~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY--PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC--CCceEEEEecCchh
Confidence 44689999999999975 445555554321 23456666555554
No 410
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.84 E-value=4.2 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=16.8
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l 82 (621)
..++.||.|.|||.++.+.+-
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999987664443
No 411
>PHA00729 NTP-binding motif containing protein
Probab=88.82 E-value=3.9 Score=40.62 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=37.0
Q ss_pred CCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC-ChHH----HHHHHHHhcccCCcEEEEEccCcHHHHHHHH
Q 007018 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAE----QLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (621)
Q Consensus 144 ~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~-gf~~----~l~~il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (621)
....+.+...++..+... .-....++++||||+=--... .+.. ....+...+...++++.+...-|..+...++
T Consensus 59 ~~~~fid~~~Ll~~L~~a-~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDA-IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHH-HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 345555555555555431 111234578999994321111 1121 1122333334455667777776777776665
Q ss_pred h
Q 007018 219 A 219 (621)
Q Consensus 219 ~ 219 (621)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 5
No 412
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.79 E-value=4 Score=46.37 Aligned_cols=21 Identities=19% Similarity=0.132 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~ 81 (621)
+.+++.||.|+|||..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 348899999999998766443
No 413
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.77 E-value=0.22 Score=47.35 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccC
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFG 182 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~ 182 (621)
+.....+||||+++..|++-....... ....-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 444567999999999887654331111 123446899999999864
No 414
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.77 E-value=0.69 Score=54.43 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=28.9
Q ss_pred CCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 23 GGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
-+|++++..+.+.+.|.+. .+..|.-++... +...+.+++.||+|+|||+..-
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHHH
Confidence 3566666666665555442 112111111110 1123569999999999998543
No 415
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=88.65 E-value=1.3 Score=49.88 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~ 205 (621)
+++-+++|+||+-.-+|..-...+.+.+..+.+++-+++.
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 5677789999998888877777777777766555544443
No 416
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.63 E-value=4.9 Score=42.30 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=61.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH-HHHHHHH---HHHHhhcc-CCCeEEEEEcCCChHHHHH
Q 007018 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLK---FTKELGRY-TDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 64 v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre-La~Q~~~---~~~~l~~~-~~l~~~~~~gg~~~~~~~~ 138 (621)
++.++.|+|||.+..+.++..+.... .+..+++. ||.. +...+.. .+..+... ............. .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI-I---- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-E----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-E----
Confidence 47889999999998877777765532 12455555 6554 4444222 33333322 1222211111100 0
Q ss_pred HHhCCCCEEEECchH--HHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC--cHHHH
Q 007018 139 ELAQNPDIIIATPGR--LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL--PSALA 214 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgr--l~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl--~~~l~ 214 (621)
+.++..|.+.+-+. -..-+ .=..++++++||+-.+.+..+...+...+.... ....+++|.|+ ...+.
T Consensus 73 -~~nG~~i~~~~~~~~~~~~~~------~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 73 -LPNGSRIQFRGADSPDSGDNI------RGFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp -ETTS-EEEEES-----SHHHH------HTS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred -ecCceEEEEeccccccccccc------cccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 03444555555321 11111 124678999999988765444444433333322 22222555543 23444
Q ss_pred HHHHhcCCC
Q 007018 215 EFAKAGLRD 223 (621)
Q Consensus 215 ~~~~~~l~~ 223 (621)
.+......+
T Consensus 145 ~~~~~~~~~ 153 (384)
T PF03237_consen 145 EIFQRNLDD 153 (384)
T ss_dssp HHHHHHHCT
T ss_pred eeeehhhcC
Confidence 455444443
No 417
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.61 E-value=2.6 Score=48.49 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l 82 (621)
..+++.|+.|+|||.++...+-
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 3579999999999987664433
No 418
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=88.51 E-value=0.3 Score=55.58 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=41.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++++.||||||||..|++|.+-.. +..++|+=|--|+...+....++.+
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4699999999999999999977552 2359999999999999888777654
No 419
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.51 E-value=1.6 Score=48.70 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=28.7
Q ss_pred HHHCCCCCChHHHHHHHHHHhcC-Cc-EEEEcCCCchHHHHHHHHHHHHH
Q 007018 38 IKRKGYKVPTPIQRKTMPLILSG-AD-VVAMARTGSGKTAAFLVPMLQRL 85 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g-~d-vv~~a~TGSGKT~afllp~l~~L 85 (621)
|...|| .|-|.+.+..++.. +. +++.||||||||... ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 444554 56677777766654 33 789999999999753 3344444
No 420
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.45 E-value=1.1 Score=48.61 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999997543
No 421
>PRK09087 hypothetical protein; Validated
Probab=88.44 E-value=1.7 Score=43.27 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.4
Q ss_pred ceEEEeccccccCCChHHHHHHHHHhccc-CCcEEEEEccCcHH
Q 007018 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (621)
Q Consensus 170 ~~vViDEah~l~~~gf~~~l~~il~~l~~-~~q~ll~SATl~~~ 212 (621)
++|++|+.|.+. .-...+..++..+.. ++++++.|.|.|+.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 379999999763 235567777776655 44544444444544
No 422
>CHL00176 ftsH cell division protein; Validated
Probab=88.44 E-value=1.5 Score=50.55 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998543
No 423
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.42 E-value=2 Score=48.36 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=54.0
Q ss_pred EEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----ccccc-CCCCCCCE
Q 007018 269 TLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAARG-IDIPLLDN 337 (621)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaarG-lDip~v~~ 337 (621)
+||+++|++-|..+++.+... ++.+..++|+++...+... ++.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888753 4667899999887766544 4446 99999995 56666 88888888
Q ss_pred EE
Q 007018 338 VI 339 (621)
Q Consensus 338 VI 339 (621)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 87
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.41 E-value=0.7 Score=47.67 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=25.7
Q ss_pred CCcceEEEeccccccCCChH--HHHHHHHHhcccCCcE-EEEEcc
Q 007018 167 KSVEYVVFDEADCLFGMGFA--EQLHKILGQLSENRQT-LLFSAT 208 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~--~~l~~il~~l~~~~q~-ll~SAT 208 (621)
-.+.++||||.|.++.-... ..+...++.+.+.-++ +..-+|
T Consensus 144 ~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 36789999999998765433 3444556666554332 333355
No 425
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.38 E-value=2.6 Score=50.70 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=36.0
Q ss_pred cceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 169 l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
--+||||++|.+.+......+..++...|.+..+++.|-+.|+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 3479999999998777778889999999999988888877543
No 426
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.37 E-value=3.8 Score=44.99 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH--
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-- 137 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~-- 137 (621)
|.=+++.|++|+|||...+--+...... .|..+++++..-. ..|+...+-... .++....+..|.-...++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm~-~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~~ 267 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEMS-AEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWEK 267 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcCC-HHHHHHHHHHHh--cCCCHHHhccCCCCHHHHHH
Confidence 4458899999999997555333333322 3567888876432 233332222211 233322222332222222
Q ss_pred -----HHHhCCCCEEE-ECc----hHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 138 -----EELAQNPDIII-ATP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 138 -----~~l~~~~~IiV-~Tp----grl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
..+.+ ..+.| .+| ..+...+.... .-..+++||||=.+.+.
T Consensus 268 ~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~--~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 268 LTSAAGKLSE-APLYIDDTPGLTITELRAKARRLK--REHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 22223 33444 333 34444333211 12357899999888764
No 427
>PRK08840 replicative DNA helicase; Provisional
Probab=88.34 E-value=5.2 Score=44.32 Aligned_cols=122 Identities=12% Similarity=0.099 Sum_probs=58.7
Q ss_pred HHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCC
Q 007018 52 KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131 (621)
Q Consensus 52 ~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~ 131 (621)
..+.-+..|.=+++.|+||.|||...+-.+...... .+..+++++..-. ..|+...+- +...++....+..|.
T Consensus 209 ~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~----~~~~v~~fSlEMs-~~ql~~Rll--a~~s~v~~~~i~~~~ 281 (464)
T PRK08840 209 KKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD----QDKPVLIFSLEMP-AEQLMMRML--ASLSRVDQTKIRTGQ 281 (464)
T ss_pred HhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh----CCCeEEEEeccCC-HHHHHHHHH--HhhCCCCHHHHhcCC
Confidence 333333345558889999999997654333332222 3667888876532 344433221 112223222222332
Q ss_pred ChHHHHH-------HHhCCCCEEEE-Cc----hHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 132 SMESQFE-------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 132 ~~~~~~~-------~l~~~~~IiV~-Tp----grl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
-.+.++. .+.....+.|- +| ..+...+.... ..-..+++||||=.|.+.
T Consensus 282 l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 282 LDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 2222222 22233445553 33 23333222211 111248899999888775
No 428
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=88.12 E-value=2.3 Score=40.71 Aligned_cols=143 Identities=21% Similarity=0.256 Sum_probs=77.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH-HHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT-LKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~-~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
+++.--.|=|||.+.+-.++..+. .|.+++|+-=-.-=...- ...+..++ ..+....+--|-..+.+..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~G-----hG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~~--- 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALG-----HGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQDR--- 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhc-----CCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcCc---
Confidence 556667888999998888776654 377777653111000000 01222221 1121111111111110000
Q ss_pred CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
..++ ......+.+..+ .+.-..+++||+||.--.+..|+ .+.+..++..-|...-+|+..-..|+.+.+.+..
T Consensus 101 -~~d~--~aa~~~w~~a~~--~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 101 -EADI--AAAKAGWEHAKE--ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred -HHHH--HHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 0022 222233333332 13334799999999998877664 4677788887787777777666789998888765
Q ss_pred c
Q 007018 220 G 220 (621)
Q Consensus 220 ~ 220 (621)
.
T Consensus 176 V 176 (198)
T COG2109 176 V 176 (198)
T ss_pred H
Confidence 3
No 429
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.99 E-value=1.4 Score=41.93 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=78.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH-HHHHHHhhccCCCeEEEEEcCC-------ChH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT-LKFTKELGRYTDLRISLLVGGD-------SME 134 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~-~~~~~~l~~~~~l~~~~~~gg~-------~~~ 134 (621)
+.+.--.|=|||.|++--++..+. .|.+++|+-=-+--..+= ...++.+ .++.+.. .|. ...
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAaG-----~G~rV~iiQFlKg~~~~GE~~~l~~~---~~v~~~~--~g~~~~~~~~~~~ 93 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIAG-----QGTPVLIVQFLKGGIQQGPDRPIQLG---QNLDWVR--CDLPRCLDTPHLD 93 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHhc-----CCCEEEEEEEecCCCcchHHHHHHhC---CCcEEEE--CCCCCeeeCCCcC
Confidence 455666899999999887776654 477888764222110000 0112222 1222221 111 101
Q ss_pred -HHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCcH
Q 007018 135 -SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPS 211 (621)
Q Consensus 135 -~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~~ 211 (621)
+... .....+....+ .+.-..+++||+||.-...+.|+ .+.+.+++...|+..-+|+.--.+|+
T Consensus 94 ~~~~~-----------~~~~~~~~a~~--~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~ 160 (178)
T PRK07414 94 ESEKK-----------ALQELWQYTQA--VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPE 160 (178)
T ss_pred HHHHH-----------HHHHHHHHHHH--HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCH
Confidence 1111 11122222222 23346789999999998888775 56788888888888888888888999
Q ss_pred HHHHHHH
Q 007018 212 ALAEFAK 218 (621)
Q Consensus 212 ~l~~~~~ 218 (621)
.+.+.+.
T Consensus 161 ~Lie~AD 167 (178)
T PRK07414 161 SLLAIAD 167 (178)
T ss_pred HHHHhCC
Confidence 9888764
No 430
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.91 E-value=3.2 Score=43.72 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHH
Q 007018 47 TPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 47 tpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllp~l 82 (621)
+|+|...+..+. .|+ -.++.||.|.||+..+..-+-
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~ 46 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQ 46 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHH
Confidence 566776666654 443 477999999999976654443
No 431
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=87.89 E-value=3.9 Score=41.90 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHHhcC---CcEEEEcCCCchHHHH
Q 007018 52 KTMPLILSG---ADVVAMARTGSGKTAA 76 (621)
Q Consensus 52 ~aip~il~g---~dvv~~a~TGSGKT~a 76 (621)
..++.+... +++++.|++|||||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 335555433 5789999999999974
No 432
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.86 E-value=1.9 Score=48.98 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=78.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~ 139 (621)
+-.++..|-=.|||+... +++..+... ..|.++++.+|.+..+..+++.+....+.. .-.....+-|+... -.
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~---i~ 328 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETIS---FS 328 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEE---EE
Confidence 457888888999998655 666554432 148899999999999999999777764421 11111111121110 00
Q ss_pred HhCC--CCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEccCc
Q 007018 140 LAQN--PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLP 210 (621)
Q Consensus 140 l~~~--~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~ 210 (621)
+.++ ..|.+++- .+.....-.+++++|+|||+-+-+. .+..++-.+ ..++++|++|.|-+
T Consensus 329 f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 329 FPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred ecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 1112 23444421 1111244457899999999987764 333443322 24889999998854
No 433
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.85 E-value=2.2 Score=50.62 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+..+++.||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999997543
No 434
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.76 E-value=0.33 Score=45.20 Aligned_cols=117 Identities=19% Similarity=0.325 Sum_probs=66.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeE-EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR-ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~-~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
..+++.+++|+|||.+ +.-+.+.|... |.+ .=+++|. +++=++..|+++.-+..|....-. .
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~----g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~la--~ 68 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREK----GYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGILA--R 68 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhc----CceeeeEEeee----------eecCCeEeeeEEEEccCCceEEEE--E
Confidence 3588999999999976 44556666653 322 3455552 345566677888777765432110 0
Q ss_pred HhCCCCEEEECchHHHHhHhhcCC--C--CcCCcceEEEecccccc--CCChHHHHHHHHHh
Q 007018 140 LAQNPDIIIATPGRLMHHLSEVED--M--SLKSVEYVVFDEADCLF--GMGFAEQLHKILGQ 195 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~~~l~~~~~--~--~l~~l~~vViDEah~l~--~~gf~~~l~~il~~ 195 (621)
.+....-|+-++-..+.+.+... + -+..-+++|+||.--|- ...|.+.+.+++..
T Consensus 69 -~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 -VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred -cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 01122334444433333332110 0 12345899999998543 45677888877654
No 435
>PF12846 AAA_10: AAA-like domain
Probab=87.76 E-value=0.8 Score=46.97 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=30.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
.++++.|+||||||.+.. .++..+.. .|..++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 578999999999998766 44444443 3677888877766554
No 436
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.70 E-value=0.64 Score=45.58 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=25.2
Q ss_pred ceEEEecccccc-C----CChHHHHHHHHHhccc-CCcEEEEEccC
Q 007018 170 EYVVFDEADCLF-G----MGFAEQLHKILGQLSE-NRQTLLFSATL 209 (621)
Q Consensus 170 ~~vViDEah~l~-~----~gf~~~l~~il~~l~~-~~q~ll~SATl 209 (621)
-+|||||+|.+. . ..+...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 689999999999 2 2355666666666332 33456677764
No 437
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=87.63 E-value=1.8 Score=39.51 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=60.9
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 007018 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (621)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (621)
+..|+.+..+.....+..++.+....+.+++|+|.+...++.+.+.|-...-...+=|+-.... ......|
T Consensus 3 ~v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV 73 (137)
T PF04364_consen 3 RVDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPV 73 (137)
T ss_dssp EEEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SE
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeE
Confidence 3456666666556788889999888999999999999999999999988766666556543221 1223579
Q ss_pred EEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccH
Q 007018 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (621)
Q Consensus 320 LV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~ 375 (621)
+|+++... -..+.-+++||.+... +. +..+ -..++-++..++.
T Consensus 74 ~i~~~~~~--~~~~~~~vLinL~~~~-p~-~~~~---------f~rvieiv~~~~~ 116 (137)
T PF04364_consen 74 LITWDQEA--NPNNHADVLINLSGEV-PP-FFSR---------FERVIEIVDQDDE 116 (137)
T ss_dssp EEE-TTS------S--SEEEE--SS---G-GGGG----------SEEEEEE-SSHH
T ss_pred EEecCccc--CCCCCCCEEEECCCCC-cc-hhhc---------ccEEEEEecCCHH
Confidence 99987632 1233368999987543 22 2222 2345777766543
No 438
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.58 E-value=1.6 Score=49.75 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=29.9
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll 204 (621)
+++-.++|+|||-.-+|..-...+.+.+..+.+++.++.
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 556689999999999888877888888876666654444
No 439
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=87.49 E-value=3 Score=41.20 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
|.-+++.|++|+|||...+--+.+.+. .|.++++++-.. -..|+.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~-----~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK-----NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 456889999999999755544444433 366788877654 4566666665553
No 440
>PRK05748 replicative DNA helicase; Provisional
Probab=87.29 E-value=4.3 Score=44.79 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=55.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH-HHhhccCCCeEEEEEcCCChHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~-~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
.|.-+++.|+||.|||...+--+...... .|..+++++..- -..|+...+ ...+ ++....+..|.-...++
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlEm-s~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLEM-GAESLVMRMLCAEG---NIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCCC-CHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHH
Confidence 34558899999999997555333332222 356688876532 223333322 2222 22222222233222222
Q ss_pred H-------HHhCCCCEEEE-Cc----hHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 138 E-------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 138 ~-------~l~~~~~IiV~-Tp----grl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
. .+. +..+.|. +| ..+...+..... ...++++||||=.+.+.
T Consensus 274 ~~~~~a~~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLS-DAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 2 222 3345543 33 344443332111 01268899999998774
No 441
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=86.97 E-value=0.48 Score=58.74 Aligned_cols=94 Identities=28% Similarity=0.380 Sum_probs=74.3
Q ss_pred cEEEEecChhhHHHHHHHHHHCC-CCceeecCCCC-----------HHHHHHHHHHHhcCCceEEEecCcccccCCCCCC
Q 007018 268 QTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMD-----------QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (621)
Q Consensus 268 k~IVF~~t~~~ve~l~~~L~~~g-~~~~~l~g~l~-----------~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v 335 (621)
-.|+|++....+....+.++..+ ..+..+.|.+. +-.+..++..|...++++|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 36899998888888877777642 22222333221 1234578999999999999999999999999999
Q ss_pred CEEEEcCCCCChhHHHHHhcccCCCC
Q 007018 336 DNVINWDFPPKPKIFVHRVGRAARAG 361 (621)
Q Consensus 336 ~~VI~~d~P~s~~~~~qrvGR~gR~G 361 (621)
+.|+.++.|.....|+|+.||+-+++
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997654
No 442
>PHA00012 I assembly protein
Probab=86.92 E-value=11 Score=39.58 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhh
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQ 87 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~ 87 (621)
-++.|..|||||+..+.-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999988877777765
No 443
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.90 E-value=2.6 Score=47.03 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 52 KTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 52 ~aip~il~g-----~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
..+..++.| .-+++.+++|+|||...+--+.+.+. .|.++++++ .-|-..|+...++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555644 56999999999999865544333332 366788887 4456677777777765
No 444
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.88 E-value=2.8 Score=47.12 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
.....++||||||++.... ...+..++..-|+...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 3567899999999986533 334445555555555545444
No 445
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=86.86 E-value=0.7 Score=52.66 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=87.1
Q ss_pred CChHHHHHHHHHHhcC--------C--cEEEEcCCCch--HHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSG--------A--DVVAMARTGSG--KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--------~--dvv~~a~TGSG--KT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
.+...|.+++-...+. . .+++-...|-| .|.|-+ +++...+ ..+++|+++-+..|-..-...
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgi--IfeNyLk----GRKrAlW~SVSsDLKfDAERD 337 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGI--IFENYLK----GRKRALWFSVSSDLKFDAERD 337 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEE--Eehhhhc----ccceeEEEEeccccccchhhc
Confidence 4678888888665532 2 25554444544 455433 4444333 357899999998887776666
Q ss_pred HHHhhccCCCeEEEEEc----CCChHHHHHHHhCCCCEEEECchHHHHhHhhcC------------CCCcCCcceEEEec
Q 007018 113 TKELGRYTDLRISLLVG----GDSMESQFEELAQNPDIIIATPGRLMHHLSEVE------------DMSLKSVEYVVFDE 176 (621)
Q Consensus 113 ~~~l~~~~~l~~~~~~g----g~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~------------~~~l~~l~~vViDE 176 (621)
+..++ .+++.+..+.- ..+.++. . .-.-.|+++|+..|.--..... .+.-+-=++|||||
T Consensus 338 L~Dig-A~~I~V~alnK~KYakIss~en-~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDE 413 (1300)
T KOG1513|consen 338 LRDIG-ATGIAVHALNKFKYAKISSKEN-T--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDE 413 (1300)
T ss_pred hhhcC-CCCccceehhhccccccccccc-C--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehh
Confidence 66665 23444443321 1111100 0 0123599999977653332100 01112235899999
Q ss_pred cccccCC---------ChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 177 ADCLFGM---------GFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 177 ah~l~~~---------gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
||+.-+. .....+..+-..+| +.+++.-|||=
T Consensus 414 CHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 414 CHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 9986541 13455666666676 56689999983
No 446
>PF14516 AAA_35: AAA-like domain
Probab=86.82 E-value=5.6 Score=42.00 Aligned_cols=116 Identities=24% Similarity=0.357 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH----H--HHHHHH-HHHHhhcc
Q 007018 48 PIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD----L--ALQTLK-FTKELGRY 119 (621)
Q Consensus 48 piQ~~aip~il~-g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre----L--a~Q~~~-~~~~l~~~ 119 (621)
|+.++++..+.. |.-+.+.||-.+|||.. +.-+.+.+.. .|.+++.|.-... + ..+++. .+..+++.
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~----~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ----QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH----CCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 499999999987 89999999999999975 4445555544 3666666654321 0 122222 33445544
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCC
Q 007018 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGM 183 (621)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~ 183 (621)
.++. ...++.+.. .++.+.++...+.+. -+ ....-=+++|||+|.+++.
T Consensus 93 L~l~-------~~l~~~w~~-------~~~~~~~~~~~~~~~-ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 93 LKLD-------EKLDEYWDE-------EIGSKISCTEYFEEY-LLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred cCCC-------hhHHHHHHH-------hcCChhhHHHHHHHH-HHhcCCCCEEEEEechhhhccC
Confidence 4443 122222221 122444444443321 00 1122238999999999973
No 447
>PRK08006 replicative DNA helicase; Provisional
Probab=86.70 E-value=7.5 Score=43.19 Aligned_cols=114 Identities=13% Similarity=0.103 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH-
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE- 138 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~- 138 (621)
|.=+++.|++|.|||...+-.+...... .|..+++++..- =..|+...+- +...++....+..|.-.++++.
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM-~~~ql~~Rll--a~~~~v~~~~i~~~~l~~~e~~~ 296 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEM-PGEQIMMRML--ASLSRVDQTRIRTGQLDDEDWAR 296 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccC-CHHHHHHHHH--HHhcCCCHHHhhcCCCCHHHHHH
Confidence 4458889999999997655444333222 366788887652 2334333221 1112333222322322222222
Q ss_pred ------HHhCCCCEEEE-----CchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 139 ------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 139 ------~l~~~~~IiV~-----Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
.+.....+.|- |+..+...+.... .....+++||||=.+.+.
T Consensus 297 ~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 297 ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 22133455553 3333333332210 011258899999888764
No 448
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.66 E-value=1.4 Score=46.77 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
.+.-++++||||||||... ..++..+... .+.+++.+--..|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~---~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN---AAGHIITIEDPIEYV 164 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC---CCCEEEEEcCChhhh
Confidence 3456899999999999754 3344444321 244666666655553
No 449
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=86.65 E-value=1.3 Score=45.15 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=37.1
Q ss_pred HHHHCCCCCChHHHHHHHHHHhc-C-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 37 AIKRKGYKVPTPIQRKTMPLILS-G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il~-g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
.+...|| .+.|.+.+..++. . .-+++.|+||||||... ..++..+.. .+.+++.+--..|+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E~ 120 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCcee
Confidence 3455564 4556666665554 3 34889999999999753 344444432 34456666555554
No 450
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.58 E-value=3.6 Score=45.43 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=16.0
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPM 81 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~ 81 (621)
..++.||.|+|||.+...-+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998765443
No 451
>PRK08506 replicative DNA helicase; Provisional
Probab=86.57 E-value=4.3 Score=45.15 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH--
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-- 137 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~-- 137 (621)
|.=+++.|+||.|||...+--+...+ . .|..+++++.. .=..|+...+-. ...++....+..|.-...++
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~-~----~g~~V~~fSlE-Ms~~ql~~Rlla--~~s~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKAL-N----QDKGVAFFSLE-MPAEQLMLRMLS--AKTSIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHH-h----cCCcEEEEeCc-CCHHHHHHHHHH--HhcCCCHHHHhcCCCCHHHHHH
Confidence 44588899999999976554444332 2 36678888764 223444332211 11233222222232222222
Q ss_pred -----HHHhCCCCEEEE-C----chHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 138 -----EELAQNPDIIIA-T----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 138 -----~~l~~~~~IiV~-T----pgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
..+.. ..+.|- + +..+...+..... ....+++||||=.+.+.
T Consensus 264 ~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 264 LSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhcc
Confidence 22223 345443 3 3334333332111 12358899999998765
No 452
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=86.50 E-value=4.3 Score=39.48 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhccc---CCcEEEEEccCcHH
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE---NRQTLLFSATLPSA 212 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~---~~q~ll~SATl~~~ 212 (621)
+.+-+++|+||-..-++......+.+++..+.. +.+++++|.--...
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~ 178 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG 178 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc
Confidence 367789999999999888777777777766532 35678877654333
No 453
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.49 E-value=2.8 Score=41.10 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=27.8
Q ss_pred HHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 54 MPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 54 ip~il~-----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
+..++. |.-+.+.|++|||||...+--+.+... .|.+++++.
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~ 54 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYID 54 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 445554 345889999999999876644444332 356788873
No 454
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=86.44 E-value=2.4 Score=50.04 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----C-CCcee-ecCCCCHHHHHHHHHHHhcCCceEEEecCc-ccccC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----G-LEPSV-CYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGI 330 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g-~~~~~-l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-aarGl 330 (621)
.+.++++.+||..-+...++.|... + ..+.. +||.|+..+++..+++|.+|..+|||+|.. +.+-.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~ 196 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRF 196 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhH
Confidence 5789999999988888887777654 3 44433 899999999999999999999999999854 44443
No 455
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.30 E-value=3.7 Score=43.48 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.||.|+|||.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997654
No 456
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=86.30 E-value=3.6 Score=45.45 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=36.7
Q ss_pred HHHHHhc-----CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 53 aip~il~-----g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
-+..++. |.-+++.|++|+|||...+.-+. .+.. .+.++++++.. |-..|+.....+++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~-~~a~----~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVAC-QLAK----NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHH-HHHh----cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 3455554 34588999999999986554333 2322 24578888875 34466655555543
No 457
>PHA02535 P terminase ATPase subunit; Provisional
Probab=86.18 E-value=7.6 Score=43.81 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
+++.....|...=...+.|+|+.-+..-+..+.-++.---=.|||..|..=++..... .|...++|+|+++.|.+.
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~----~G~nqiflSas~~QA~~f 198 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL----TGRNQIFLSASKAQAHVF 198 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh----cCCceEEECCCHHHHHHH
Confidence 5666666666654567999999987542223433444445579999887666554443 366789999999999998
Q ss_pred HHHHHHhhcc
Q 007018 110 LKFTKELGRY 119 (621)
Q Consensus 110 ~~~~~~l~~~ 119 (621)
.+.+..+++.
T Consensus 199 ~~yi~~~a~~ 208 (581)
T PHA02535 199 KQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHh
Confidence 8888777554
No 458
>PRK13695 putative NTPase; Provisional
Probab=85.87 E-value=6.5 Score=37.08 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|+|||....
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998655
No 459
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.86 E-value=2.1 Score=51.26 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.++++.|++|+|||...-
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 479999999999998654
No 460
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.86 E-value=11 Score=42.12 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCC
Q 007018 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNP 144 (621)
Q Consensus 69 TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~ 144 (621)
.+.||+..-++.+.+.+... -.+.+||.+-+.+-|.|++..+. .+.++.+..++|..+..+.-+.+ .+..
T Consensus 366 vF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred eeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 46677777777777766654 35679999999999999887765 45688999999987655544333 3567
Q ss_pred CEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 145 ~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
.|+||| +++.+ .+++.++.+||-+..-
T Consensus 440 wvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 440 WVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred eEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 899999 55665 5999999999996653
No 461
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=85.85 E-value=1.7 Score=49.96 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=39.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH--HHHHHHHHHHHhhcc
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD--LALQTLKFTKELGRY 119 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre--La~Q~~~~~~~l~~~ 119 (621)
.++++.|+||+|||..+...+.+.+.. |..++++=|-.. |...+...++..+..
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~-----g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR-----GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 579999999999998775544444443 567888888754 777777777777644
No 462
>PHA00350 putative assembly protein
Probab=85.74 E-value=2.1 Score=46.09 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHH-HHHHHHhh
Q 007018 63 VVAMARTGSGKTAAFLV-PMLQRLNQ 87 (621)
Q Consensus 63 vv~~a~TGSGKT~afll-p~l~~L~~ 87 (621)
.++.|..|||||+..+. -++..++.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 46889999999988775 35555543
No 463
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=85.69 E-value=0.89 Score=49.14 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=34.0
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
|.-...+++++.|.||||||. ++.+++..+... |.+++|.=|.-+....
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~----g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR----GDRAIIYDPKGEFTER 58 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT----T-EEEEEEETTHHHHH
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc----CCEEEEEECCchHHHH
Confidence 334566899999999999997 456777776653 7789999998776543
No 464
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=85.59 E-value=1.4 Score=45.30 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=31.7
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
+.+-+++++||.-.-++......+..++..+..++ ++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 45667999999999888888888888888765544 5555554
No 465
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.57 E-value=5.7 Score=47.61 Aligned_cols=45 Identities=20% Similarity=0.144 Sum_probs=25.6
Q ss_pred cceEEEeccccccCCChH---HHHHHHHHhcccCCcEEEEEccCcHHH
Q 007018 169 VEYVVFDEADCLFGMGFA---EQLHKILGQLSENRQTLLFSATLPSAL 213 (621)
Q Consensus 169 l~~vViDEah~l~~~gf~---~~l~~il~~l~~~~q~ll~SATl~~~l 213 (621)
-.+|+|||+|.+...|.. .....++...-..-.+.+.-||-++..
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEY 314 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHH
Confidence 458999999999853321 223344433333445666666655544
No 466
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=85.55 E-value=0.56 Score=54.09 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=40.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++++.|+||||||..|++|-+-.. ...++|+=|--|+...+..+.+..+
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------~gS~VV~DpKGE~~~~Ta~~R~~~G 189 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------KGSVIALDVKGELFELTSRARKASG 189 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------CCCEEEEeCCchHHHHHHHHHHhCC
Confidence 4799999999999999999975432 2358999999999888877776654
No 467
>PRK07413 hypothetical protein; Validated
Probab=85.53 E-value=6.3 Score=42.19 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=45.8
Q ss_pred CCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 164 MSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 164 ~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
+.-..+++||+||.-...+.|+ .+.+..++...|+..-+|+.--.+|+.+.+++..
T Consensus 121 i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 121 IASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred HhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 3346789999999998887775 4677788888888888888888899999888764
No 468
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.46 E-value=1 Score=43.03 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccC-CcEEEEEcc
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSAT 208 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~-~q~ll~SAT 208 (621)
.+.+++++||...-++......+..++..+... +++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 566899999999999887777777777766433 555555443
No 469
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.34 E-value=0.63 Score=47.97 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
..++++.||||||||+.+-
T Consensus 97 KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eccEEEECCCCCcHHHHHH
Confidence 3579999999999998543
No 470
>PRK07004 replicative DNA helicase; Provisional
Probab=85.33 E-value=4 Score=45.19 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=54.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.|.=+++.|++|+|||...+--+...... .|..+++++..-. ..|+...+ ++...++....+..|.-.+.++.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM~-~~ql~~R~--la~~~~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEMP-GTQLAMRM--LGSVGRLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCCC-HHHHHHHH--HHhhcCCCHHHHhcCCCCHHHHH
Confidence 34558899999999997554333322222 3566777765321 22322211 11122232222222332233332
Q ss_pred -------HHhCCCCEEEE-Cc----hHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 139 -------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 139 -------~l~~~~~IiV~-Tp----grl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
.+. +..+.|. +| ..+...+.+... ....+++||||=.+.+.
T Consensus 285 ~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 285 KLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhcc
Confidence 222 3455553 33 334333322111 12357899999988775
No 471
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.32 E-value=3.5 Score=45.72 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=56.1
Q ss_pred CCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh----CCCCEEEECchHHHHhHhhcCCCCc
Q 007018 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA----QNPDIIIATPGRLMHHLSEVEDMSL 166 (621)
Q Consensus 91 ~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~----~~~~IiV~Tpgrl~~~l~~~~~~~l 166 (621)
..+.++||.|-|+.-+.++...++..+ +.+.+++|..+..+....++ +.+.|+|||.- ..+ .+++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV-----AaR--GLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV-----AAR--GLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEccc-----ccc--cCCC
Confidence 356689999999999998777776643 78999999988777665553 47899999953 322 6888
Q ss_pred CCcceEEE
Q 007018 167 KSVEYVVF 174 (621)
Q Consensus 167 ~~l~~vVi 174 (621)
.+|++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 88888774
No 472
>PRK08760 replicative DNA helicase; Provisional
Probab=85.28 E-value=4.3 Score=45.14 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH--
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-- 137 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~-- 137 (621)
|.=+++.|++|.|||...+--+...... .|..+++++..-. ..|+...+-... .++....+..|.-...++
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs-~~ql~~Rl~a~~--s~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMS-ASQLAMRLISSN--GRINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCC-HHHHHHHHHHhh--CCCcHHHHhcCCCCHHHHHH
Confidence 3448889999999997655444333222 2556888876432 234333222221 122222222232222222
Q ss_pred -----HHHhCCCCEEEE-----CchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 138 -----~~l~~~~~IiV~-----Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
..+. +..+.|- |+..+...+.... .-..+++||||=.+.+.
T Consensus 302 ~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 2222 2445443 3344444443321 12458899999888764
No 473
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.27 E-value=4.1 Score=42.76 Aligned_cols=37 Identities=11% Similarity=0.009 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 46 ptpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllp~l 82 (621)
+.|+|...+..+. .++ -.++.|+.|.||+..+..-+-
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~ 47 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR 47 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 5677777776654 343 488999999999976554433
No 474
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=85.23 E-value=32 Score=39.37 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=60.6
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhcc-CCCcEEEEecChhhHHHHHHHHHHCCCCc------eeecCCCCHHHHHHHHHHH
Q 007018 240 KLAFFTLRQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEP------SVCYGDMDQDARKIHVSRF 312 (621)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~------~~l~g~l~~~~R~~~l~~F 312 (621)
...|..-........|-..+..... -++.+++|+++......+.......|+-. .+++...+. -..+++.|
T Consensus 602 eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Y 679 (821)
T KOG1133|consen 602 EFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGY 679 (821)
T ss_pred EEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHH
Confidence 3334333334444455444444322 24779999999999998888887665421 112222222 23456666
Q ss_pred hc----CCceEEEec--CcccccCCCCC--CCEEEEcCCC
Q 007018 313 RA----RKTMFLIVT--DVAARGIDIPL--LDNVINWDFP 344 (621)
Q Consensus 313 ~~----g~~~ILV~T--dvaarGlDip~--v~~VI~~d~P 344 (621)
.. |.-.||++. .-++.|||+.+ .+.||..++|
T Consensus 680 a~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlP 719 (821)
T KOG1133|consen 680 AEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLP 719 (821)
T ss_pred HHHhhcCCCeEEEEEeccccccccccccccccEEEEeecC
Confidence 43 443555544 56899999975 6678877776
No 475
>PRK09354 recA recombinase A; Provisional
Probab=85.18 E-value=5.8 Score=42.08 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=35.1
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
.+..+|. |+-+.+.|++|||||...+..+.+... .|..++++.....+-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 4555565 345779999999999876655554443 3667888888776654
No 476
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.04 E-value=6.4 Score=39.83 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=16.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHh
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLN 86 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~ 86 (621)
+++.|+|||||+.. +..|+..-.
T Consensus 130 viiVGaTGSGKSTt-mAaMi~yRN 152 (375)
T COG5008 130 VIIVGATGSGKSTT-MAAMIGYRN 152 (375)
T ss_pred EEEECCCCCCchhh-HHHHhcccc
Confidence 77899999999976 444444433
No 477
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.78 E-value=1.8 Score=48.52 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (621)
..-+|++++-.+.+...+.+.- +..|..++... ....+.+++.||+|+|||...
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 3457777766555555443310 12222222211 112257999999999999853
No 478
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=84.58 E-value=7.8 Score=38.73 Aligned_cols=52 Identities=21% Similarity=0.207 Sum_probs=30.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhh-------hCCCCCeEEEEEc---chHHHHHHHHHHHH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQ-------HVPQGGVRALILS---PTRDLALQTLKFTK 114 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~-------~~~~~g~~~LIL~---PtreLa~Q~~~~~~ 114 (621)
.++.|+.|+|||...+-.++....- .....+.++||++ |..++...+.....
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHh
Confidence 5789999999998766555543211 1112356789998 44444444444333
No 479
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.33 E-value=4.4 Score=48.46 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHh----cC--CcEEEEcCCCchHHHHH
Q 007018 50 QRKTMPLIL----SG--ADVVAMARTGSGKTAAF 77 (621)
Q Consensus 50 Q~~aip~il----~g--~dvv~~a~TGSGKT~af 77 (621)
|..-|..++ .+ .++++.|+.|+|||...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 555555554 22 47999999999999864
No 480
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=84.33 E-value=0.69 Score=53.29 Aligned_cols=50 Identities=26% Similarity=0.300 Sum_probs=41.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++++.||||||||..+++|-+-.. +..++|+=|--|+...+..+.++++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~-------~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW-------PGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC-------CCCEEEEeCcchHHHHHHHHHHhCC
Confidence 5799999999999999999966542 2359999999999998888776654
No 481
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.20 E-value=12 Score=36.86 Aligned_cols=128 Identities=13% Similarity=0.151 Sum_probs=68.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc---chHHHHHHHHH----HHHHhhccCCCeEEEE-EcCCC
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLK----FTKELGRYTDLRISLL-VGGDS 132 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~---PtreLa~Q~~~----~~~~l~~~~~l~~~~~-~gg~~ 132 (621)
.=+++.|+.|+|||..-. ++....-..|.++.+++ |+|+...|+.. ....+... .+.+..+ ..+..
T Consensus 29 sL~lIEGd~~tGKSvLsq-----r~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~ 102 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQ-----RFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVN 102 (235)
T ss_pred eEEEEECCCCccHHHHHH-----HHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecccccc
Confidence 348899999999997544 33332223577788876 46676666543 11111111 1111111 11111
Q ss_pred hHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHH---HhcccCCcEEEEEccC
Q 007018 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL---GQLSENRQTLLFSATL 209 (621)
Q Consensus 133 ~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il---~~l~~~~q~ll~SATl 209 (621)
...+ +...+++.+.+ .....+-+++|||-...+....-...+.+++ +.+...-.++++|+-+
T Consensus 103 ~~~~-------------~~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 103 WGRR-------------SARKLLDLLLE--FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred cChH-------------HHHHHHHHHHh--hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 1111 11234444443 2346677899999988766443222333333 3445566899999875
No 482
>PRK09165 replicative DNA helicase; Provisional
Probab=84.19 E-value=6 Score=44.32 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=56.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhC----------CCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcC
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV----------PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~----------~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg 130 (621)
.=+++.|+||+|||...+--+........ ...|..++|++..-. ..|+...+-.. ..++....+..|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~--~s~v~~~~i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSE--QSEISSSKIRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHH--hcCCCHHHHhcC
Confidence 34888999999999765544443322211 113667888876422 23433322111 223322222333
Q ss_pred CChHHHHHHHh------CCCCEEEE-----CchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 131 DSMESQFEELA------QNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 131 ~~~~~~~~~l~------~~~~IiV~-----Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
.-...++..+. ....+.|- |+..+...+.... .-..+++||||=.+.+.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcc
Confidence 32222222211 12345543 2334444443321 12458899999998765
No 483
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.17 E-value=4.6 Score=48.23 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afll 79 (621)
.++++.|++|.|||...-.
T Consensus 201 ~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 5799999999999987543
No 484
>PRK05636 replicative DNA helicase; Provisional
Probab=84.13 E-value=5.7 Score=44.48 Aligned_cols=109 Identities=19% Similarity=0.291 Sum_probs=53.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc---hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP---TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P---treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~ 137 (621)
.=+++.|+||+|||...+-.+...... .+..+++++. ..+|+..+. +...++....+..|.-.++++
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSlEMs~~ql~~R~l------s~~s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSLEMSKSEIVMRLL------SAEAEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEeeCCHHHHHHHHH------HHhcCCCHHHHhcCCCCHHHH
Confidence 347889999999997555333332222 2556777744 333433322 111223222233343233333
Q ss_pred HHH------hCCCCEEEE-Cch----HHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 138 EEL------AQNPDIIIA-TPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 138 ~~l------~~~~~IiV~-Tpg----rl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
..+ ..+..+.|- +|+ .+...+.... .-..+++||||=.+.+.
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 221 123445553 333 2332222211 12458899999999875
No 485
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=84.12 E-value=3.3 Score=45.81 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=53.6
Q ss_pred CcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----ccc-ccCCCCCC
Q 007018 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPLL 335 (621)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaa-rGlDip~v 335 (621)
.++||.++|++-+..+...++.. ++.+..++|+.+.......+. ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 47999999999999988877653 577888999988766543332 5689999993 333 34788889
Q ss_pred CEEEEcC
Q 007018 336 DNVINWD 342 (621)
Q Consensus 336 ~~VI~~d 342 (621)
++||.-+
T Consensus 149 ~~lViDE 155 (460)
T PRK11776 149 NTLVLDE 155 (460)
T ss_pred CEEEEEC
Confidence 9888443
No 486
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.12 E-value=7.6 Score=44.66 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=25.3
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
....+++||||+|.+.... ...+..++...|... +++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 4567899999999986532 334445555544444 4445555
No 487
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.10 E-value=4.7 Score=42.64 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHHHHH
Q 007018 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 46 ptpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afllp~l 82 (621)
++|+|...+..+. .|+ -.++.||.|+||+..+..-+-
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~ 46 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSR 46 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHH
Confidence 4677888777665 343 478999999999987664433
No 488
>PRK14701 reverse gyrase; Provisional
Probab=84.06 E-value=3.7 Score=52.20 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (621)
.+.++||.+||+.-+..+...|... ++.+..+||+++..++...++.+.+|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4668999999999999888888763 456788999999999988899999999999999964
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=84.05 E-value=1.5 Score=41.82 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=29.1
Q ss_pred cCC--cceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKS--VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~--l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
+.+ -+++++||--.-++......+.+++..+...-.+++++
T Consensus 103 ~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIiv 145 (176)
T cd03238 103 FSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145 (176)
T ss_pred hhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345 68999999998888877788888777764333344443
No 490
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=83.94 E-value=23 Score=34.30 Aligned_cols=33 Identities=9% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHhcccCCcEEEEEccCcHHHHHHHHh
Q 007018 187 EQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (621)
Q Consensus 187 ~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (621)
+.+.+-.+.+.+.+++++.|+.-...+.++...
T Consensus 163 evm~~da~~~np~~~ii~~n~ktg~G~~~~~~~ 195 (202)
T COG0378 163 EVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRF 195 (202)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHH
Confidence 556666677788999999999988777777554
No 491
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=83.83 E-value=2.5 Score=44.84 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=41.8
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHh-cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~il-~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa 106 (621)
+..+.+.|+ +++.+...+..+. .++++++.|+||||||... -.++..+. ...+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~-----~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVA-----PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCC-----CCCcEEEECCcceec
Confidence 455556665 4566777776655 4578999999999999743 22332322 234677888888873
No 492
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=83.77 E-value=0.86 Score=49.72 Aligned_cols=50 Identities=26% Similarity=0.445 Sum_probs=35.4
Q ss_pred HHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 54 MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 54 ip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
+|.-...+++++.|+||||||.. +..++..+.. .+.+++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA----RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh----cCCCEEEEeCCcchhHh
Confidence 34445568999999999999985 4444545443 25679999999886543
No 493
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.76 E-value=6.8 Score=44.73 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=56.2
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+|+..+.++++.+... ++.+..++|+.+..+....+ .+..+|+|||. .+.+ .+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCcc
Confidence 3668999999999999988887664 47899999987766554333 35789999993 4443 68889
Q ss_pred CcceEEEec
Q 007018 168 SVEYVVFDE 176 (621)
Q Consensus 168 ~l~~vViDE 176 (621)
++++||.-+
T Consensus 325 ~V~~VInyd 333 (572)
T PRK04537 325 GVKYVYNYD 333 (572)
T ss_pred CCCEEEEcC
Confidence 999887643
No 494
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.68 E-value=8.4 Score=40.38 Aligned_cols=40 Identities=23% Similarity=0.279 Sum_probs=25.1
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SA 207 (621)
....+++|||+||.|.... ...+..++..-| ...++|.|.
T Consensus 122 ~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 3578899999999986542 344555555555 554444443
No 495
>PRK05595 replicative DNA helicase; Provisional
Probab=83.65 E-value=2.9 Score=46.09 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.=+++.|+||.|||...+--+...... .|.++++++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlE 239 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLE 239 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecC
Confidence 3447789999999997655333322222 36678888775
No 496
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=83.60 E-value=5 Score=41.15 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=59.1
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH---HHHHHHHHhhccCCCeEEEEEcCC
Q 007018 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL---QTLKFTKELGRYTDLRISLLVGGD 131 (621)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~---Q~~~~~~~l~~~~~l~~~~~~gg~ 131 (621)
|.-..|+-+++.|-.|+|||.+.. ... ...+.++++-|...-.. +......
T Consensus 89 ~A~k~g~l~~vyg~~g~gKt~a~~-----~y~----~s~p~~~l~~~~p~~~a~~~i~~i~~~----------------- 142 (297)
T COG2842 89 PASKTGSLVVVYGYAGLGKTQAAK-----NYA----PSNPNALLIEADPSYTALVLILIICAA----------------- 142 (297)
T ss_pred hhhhcCceEEEeccccchhHHHHH-----hhc----ccCccceeecCChhhHHHHHHHHHHHH-----------------
Confidence 344456778999999999998744 211 23556777777664222 1111111
Q ss_pred ChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 132 ~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
..+.|.+.+.+...+..........++|+|||+++.-.+ .+.+..+.. +....+.+..+
T Consensus 143 --------------~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~a-le~lr~i~d---~~Gi~~vLvG~ 201 (297)
T COG2842 143 --------------AFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRA-LEELRRIHD---KTGIGVVLVGM 201 (297)
T ss_pred --------------HhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHH-HHHHHHHHH---hhCceEEEecC
Confidence 122233333222222111225677899999999975432 233333333 34456666666
No 497
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=83.44 E-value=2.6 Score=43.05 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afll 79 (621)
.++++.||+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 3699999999999975543
No 498
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=83.39 E-value=3.7 Score=41.29 Aligned_cols=66 Identities=9% Similarity=0.082 Sum_probs=51.9
Q ss_pred ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccC-CCCCccEEEEEeccccHHHHHHHH
Q 007018 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA-RAGRTGTAFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 317 ~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~g-R~G~~G~~i~~v~~~e~~~l~~l~ 382 (621)
..|+|+=+.++||+-++++.......-+...+++.|+.=--| |.|-.+.|=++.+++-...+.++.
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 789999999999999999998888888888999999754444 556667888887776555555543
No 499
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.17 E-value=2.6 Score=44.41 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998654
No 500
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=83.13 E-value=0.99 Score=51.67 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=40.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++++.||||||||..+++|-+ ... +..++|+=|--|+...+..+-++.+
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnL---L~~----~gS~VV~DpKgE~~~~Ta~~R~~~G 261 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTA---LKY----GGPLVCLDPSTEVAPMVCEHRRQAG 261 (623)
T ss_pred ceEEEEeCCCCCccceeehhhh---hcC----CCCEEEEEChHHHHHHHHHHHHHcC
Confidence 4799999999999999999953 222 3359999999999888877666553
Done!