Query 007018
Match_columns 621
No_of_seqs 438 out of 3110
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 15:01:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.7E-63 9.4E-68 541.8 45.2 368 22-393 55-428 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.5E-59 8.6E-64 505.4 40.8 368 22-394 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 5.2E-59 1.8E-63 503.5 41.0 369 20-390 12-400 (417)
4 1s2m_A Putative ATP-dependent 100.0 7.5E-57 2.6E-61 484.2 43.2 371 18-394 16-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 2.9E-57 1E-61 489.0 36.6 369 22-395 39-409 (414)
6 1xti_A Probable ATP-dependent 100.0 8.8E-56 3E-60 473.9 41.6 369 22-395 7-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 1.1E-55 3.7E-60 476.1 40.7 365 22-393 24-400 (412)
8 1hv8_A Putative ATP-dependent 100.0 4.3E-55 1.5E-59 463.4 42.9 359 21-391 4-363 (367)
9 3sqw_A ATP-dependent RNA helic 100.0 1.1E-55 3.8E-60 498.9 39.2 371 20-390 14-415 (579)
10 3pey_A ATP-dependent RNA helic 100.0 8.6E-55 2.9E-59 465.8 42.1 363 22-393 4-378 (395)
11 3i5x_A ATP-dependent RNA helic 100.0 7E-55 2.4E-59 490.6 39.4 368 23-390 68-466 (563)
12 3fmp_B ATP-dependent RNA helic 100.0 3.4E-57 1.2E-61 499.6 19.1 364 23-393 92-467 (479)
13 1fuu_A Yeast initiation factor 100.0 2E-56 6.9E-61 479.0 22.5 368 20-393 18-386 (394)
14 2z0m_A 337AA long hypothetical 100.0 5.2E-52 1.8E-56 434.9 36.2 335 30-386 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 3E-51 1E-55 455.4 21.0 363 24-395 120-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 1.8E-49 6.1E-54 446.8 34.8 342 24-381 22-382 (591)
17 3oiy_A Reverse gyrase helicase 100.0 3.8E-50 1.3E-54 434.9 27.2 325 34-386 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 9.7E-49 3.3E-53 436.0 35.5 339 23-382 2-352 (523)
19 1tf5_A Preprotein translocase 100.0 1.8E-48 6.3E-53 440.7 32.0 323 40-374 79-546 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 4.1E-46 1.4E-50 417.2 31.8 334 41-377 3-512 (556)
21 4ddu_A Reverse gyrase; topoiso 100.0 1.6E-46 5.4E-51 448.1 29.7 321 40-386 74-503 (1104)
22 2fsf_A Preprotein translocase 100.0 5.5E-47 1.9E-51 427.4 22.1 356 6-375 31-585 (853)
23 3tbk_A RIG-I helicase domain; 100.0 1.3E-45 4.5E-50 412.5 28.9 333 45-381 4-515 (555)
24 1nkt_A Preprotein translocase 100.0 3.5E-45 1.2E-49 413.0 31.2 357 6-375 65-619 (922)
25 2ykg_A Probable ATP-dependent 100.0 8.8E-46 3E-50 426.7 25.2 343 35-380 3-523 (696)
26 2va8_A SSO2462, SKI2-type heli 100.0 1.5E-44 5.2E-49 417.7 33.5 338 21-374 6-409 (715)
27 3l9o_A ATP-dependent RNA helic 100.0 5.3E-45 1.8E-49 435.1 28.7 340 23-381 162-606 (1108)
28 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-45 6.5E-50 438.8 23.5 336 24-387 31-468 (1054)
29 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-44 5.5E-49 422.0 30.8 335 40-377 243-753 (797)
30 2zj8_A DNA helicase, putative 100.0 3.4E-45 1.2E-49 423.3 23.9 340 23-377 1-391 (720)
31 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-44 3.7E-49 418.0 23.7 339 23-377 1-392 (702)
32 1wp9_A ATP-dependent RNA helic 100.0 8.3E-43 2.8E-47 381.4 33.9 324 45-376 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 3.2E-43 1.1E-47 416.0 29.1 336 38-376 241-752 (936)
34 2xgj_A ATP-dependent RNA helic 100.0 7.7E-42 2.6E-46 404.6 36.0 322 38-381 80-508 (1010)
35 1gm5_A RECG; helicase, replica 100.0 1.6E-42 5.6E-47 398.7 25.9 325 32-378 356-702 (780)
36 4gl2_A Interferon-induced heli 100.0 1.9E-42 6.4E-47 399.1 19.2 324 45-373 7-518 (699)
37 2eyq_A TRCF, transcription-rep 100.0 7.7E-40 2.6E-44 392.8 40.2 325 27-374 585-923 (1151)
38 2whx_A Serine protease/ntpase/ 100.0 1.5E-43 5.2E-48 399.9 7.4 317 25-385 151-493 (618)
39 4a4z_A Antiviral helicase SKI2 100.0 2.9E-40 9.8E-45 391.1 30.4 320 41-381 36-502 (997)
40 2jlq_A Serine protease subunit 100.0 8.3E-42 2.9E-46 373.7 13.9 287 42-372 1-310 (451)
41 2oca_A DAR protein, ATP-depend 100.0 4.1E-41 1.4E-45 373.9 18.7 313 44-371 112-453 (510)
42 4f92_B U5 small nuclear ribonu 100.0 5.2E-39 1.8E-43 396.0 31.9 341 30-380 911-1315(1724)
43 2xau_A PRE-mRNA-splicing facto 100.0 2.4E-39 8.1E-44 374.4 21.7 336 21-375 70-445 (773)
44 2fwr_A DNA repair protein RAD2 100.0 4.4E-39 1.5E-43 354.1 21.0 293 45-374 93-455 (472)
45 2wv9_A Flavivirin protease NS2 100.0 1.2E-40 4.2E-45 378.7 5.9 305 37-384 202-547 (673)
46 1yks_A Genome polyprotein [con 100.0 1.1E-40 3.9E-45 363.4 5.4 280 56-385 4-314 (440)
47 3o8b_A HCV NS3 protease/helica 100.0 8.1E-40 2.8E-44 367.2 11.5 278 46-377 218-518 (666)
48 4f92_B U5 small nuclear ribonu 100.0 9.9E-38 3.4E-42 384.6 28.4 333 42-381 76-481 (1724)
49 3fe2_A Probable ATP-dependent 100.0 3.4E-37 1.2E-41 309.2 23.8 211 21-232 27-240 (242)
50 2z83_A Helicase/nucleoside tri 100.0 2.2E-39 7.6E-44 355.2 7.4 282 42-373 6-313 (459)
51 3fmo_B ATP-dependent RNA helic 100.0 8.1E-37 2.8E-41 316.5 20.4 205 22-231 91-299 (300)
52 1vec_A ATP-dependent RNA helic 100.0 4.5E-36 1.5E-40 292.8 24.4 203 22-227 2-205 (206)
53 3ber_A Probable ATP-dependent 100.0 4.3E-36 1.5E-40 302.8 24.4 207 22-230 42-248 (249)
54 2v6i_A RNA helicase; membrane, 100.0 7.4E-37 2.5E-41 332.5 20.0 270 59-371 1-289 (431)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 1.7E-36 5.9E-41 306.0 19.6 220 21-241 21-251 (253)
56 3iuy_A Probable ATP-dependent 100.0 4.4E-36 1.5E-40 298.1 21.0 207 20-228 16-227 (228)
57 2pl3_A Probable ATP-dependent 100.0 1.5E-35 5.3E-40 295.7 24.0 209 22-231 24-234 (236)
58 1q0u_A Bstdead; DEAD protein, 100.0 4.9E-36 1.7E-40 296.0 19.3 206 23-231 4-213 (219)
59 3bor_A Human initiation factor 100.0 8.9E-36 3E-40 298.1 21.4 207 21-230 28-235 (237)
60 2oxc_A Probable ATP-dependent 100.0 2E-35 6.7E-40 294.1 23.3 207 20-230 21-229 (230)
61 3ly5_A ATP-dependent RNA helic 100.0 1.1E-35 3.7E-40 302.1 21.3 205 22-226 51-259 (262)
62 3h1t_A Type I site-specific re 100.0 2.1E-35 7.2E-40 333.9 23.2 302 45-362 178-545 (590)
63 2gxq_A Heat resistant RNA depe 100.0 6.6E-35 2.3E-39 284.6 22.9 204 24-230 2-206 (207)
64 3jux_A Protein translocase sub 100.0 1.2E-33 4.3E-38 312.7 35.7 321 41-375 72-589 (822)
65 1qde_A EIF4A, translation init 100.0 6.1E-35 2.1E-39 288.8 21.7 209 20-232 11-219 (224)
66 3rc3_A ATP-dependent RNA helic 100.0 3.1E-35 1.1E-39 333.5 20.9 313 31-391 130-462 (677)
67 1t6n_A Probable ATP-dependent 100.0 1.7E-34 5.7E-39 285.0 22.8 206 20-228 11-219 (220)
68 3dmq_A RNA polymerase-associat 100.0 7.2E-34 2.5E-38 336.7 25.4 321 45-375 153-617 (968)
69 3dkp_A Probable ATP-dependent 100.0 3.8E-34 1.3E-38 287.3 17.3 210 22-232 24-243 (245)
70 1z63_A Helicase of the SNF2/RA 100.0 4.4E-33 1.5E-37 308.5 26.2 312 45-376 37-456 (500)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 3.5E-32 1.2E-36 320.6 22.4 313 45-372 271-708 (1038)
72 2ipc_A Preprotein translocase 100.0 1.8E-28 6E-33 276.1 40.5 319 41-374 76-699 (997)
73 3mwy_W Chromo domain-containin 100.0 1.7E-29 5.8E-34 294.6 29.9 320 45-375 236-686 (800)
74 1z3i_X Similar to RAD54-like; 100.0 7.8E-29 2.7E-33 282.3 34.2 322 45-375 55-530 (644)
75 1c4o_A DNA nucleotide excision 100.0 4E-28 1.4E-32 276.6 28.8 176 198-382 379-559 (664)
76 2d7d_A Uvrabc system protein B 100.0 5.6E-27 1.9E-31 267.0 28.5 176 198-382 385-565 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 7.3E-27 2.5E-31 219.7 20.9 155 235-391 6-160 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 2.4E-27 8.1E-32 229.0 17.3 171 217-390 8-179 (191)
79 1t5i_A C_terminal domain of A 99.9 2.5E-26 8.4E-31 218.2 17.9 158 236-395 3-161 (172)
80 2rb4_A ATP-dependent RNA helic 99.9 3E-26 1E-30 218.0 18.4 157 235-393 4-167 (175)
81 1fuk_A Eukaryotic initiation f 99.9 3.3E-26 1.1E-30 215.6 18.2 155 238-394 3-158 (165)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.2E-26 1.4E-30 219.2 16.8 161 232-393 13-173 (185)
83 3eaq_A Heat resistant RNA depe 99.9 2.4E-25 8.1E-30 218.7 21.4 159 239-399 6-166 (212)
84 3i32_A Heat resistant RNA depe 99.9 1.7E-24 6E-29 223.0 24.5 159 239-399 3-163 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 5.8E-26 2E-30 215.1 0.0 152 238-391 3-155 (170)
86 3b6e_A Interferon-induced heli 99.9 4E-24 1.4E-28 209.0 12.9 168 40-208 28-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 1.7E-22 5.8E-27 225.4 22.4 300 41-372 4-520 (540)
88 3llm_A ATP-dependent RNA helic 99.9 4.7E-23 1.6E-27 205.4 13.7 180 33-224 49-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 8.9E-21 3E-25 212.2 30.0 312 42-372 1-530 (551)
90 1rif_A DAR protein, DNA helica 99.9 5.4E-22 1.8E-26 203.2 11.1 154 45-213 113-266 (282)
91 2fz4_A DNA repair protein RAD2 99.8 1.2E-18 4.1E-23 173.8 16.7 138 45-212 93-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.8 1E-17 3.6E-22 189.2 23.0 316 45-372 3-583 (620)
93 1z5z_A Helicase of the SNF2/RA 99.8 3E-18 1E-22 174.1 12.6 130 246-375 92-226 (271)
94 1w36_D RECD, exodeoxyribonucle 98.9 5.4E-09 1.8E-13 117.8 12.0 146 47-208 151-298 (608)
95 3lfu_A DNA helicase II; SF1 he 98.1 0.00029 9.8E-09 79.7 22.8 71 44-117 8-78 (647)
96 2wjy_A Regulator of nonsense t 98.0 0.00031 1.1E-08 81.2 22.5 70 43-116 354-423 (800)
97 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.2E-10 88.3 11.8 123 42-206 187-313 (574)
98 3upu_A ATP-dependent DNA helic 98.0 2.5E-05 8.5E-10 84.9 12.4 139 39-206 19-162 (459)
99 2gk6_A Regulator of nonsense t 97.9 6E-05 2E-09 85.1 14.0 70 43-116 178-247 (624)
100 4b3f_X DNA-binding protein smu 97.9 2.5E-05 8.7E-10 88.5 10.9 67 45-116 189-256 (646)
101 2xzl_A ATP-dependent helicase 97.9 7.9E-05 2.7E-09 86.3 14.5 70 43-116 358-427 (802)
102 3hgt_A HDA1 complex subunit 3; 97.4 0.0011 3.7E-08 67.8 12.3 125 248-377 107-241 (328)
103 2o0j_A Terminase, DNA packagin 96.9 0.0074 2.5E-07 63.5 13.4 71 45-118 163-233 (385)
104 3ec2_A DNA replication protein 96.9 0.0076 2.6E-07 56.0 11.5 32 47-78 16-56 (180)
105 3cpe_A Terminase, DNA packagin 96.7 0.0052 1.8E-07 68.7 10.4 73 45-120 163-235 (592)
106 2orw_A Thymidine kinase; TMTK, 96.5 0.0088 3E-07 56.2 9.3 40 59-103 2-41 (184)
107 3vkw_A Replicase large subunit 96.2 0.0055 1.9E-07 65.4 6.5 106 63-208 164-269 (446)
108 1xx6_A Thymidine kinase; NESG, 96.2 0.008 2.7E-07 56.9 6.8 39 60-103 8-46 (191)
109 2b8t_A Thymidine kinase; deoxy 96.1 0.0028 9.6E-08 61.6 3.6 92 59-181 11-102 (223)
110 2kjq_A DNAA-related protein; s 96.1 0.0034 1.2E-07 56.9 3.8 41 168-209 83-124 (149)
111 3kl4_A SRP54, signal recogniti 96.0 0.029 9.9E-07 59.9 10.8 127 62-217 99-231 (433)
112 2j9r_A Thymidine kinase; TK1, 95.8 0.011 3.6E-07 56.9 6.1 40 60-104 28-67 (214)
113 1uaa_A REP helicase, protein ( 95.5 0.017 5.7E-07 65.6 7.1 70 45-117 2-71 (673)
114 3te6_A Regulatory protein SIR3 95.2 0.14 4.8E-06 52.3 12.3 27 60-87 45-71 (318)
115 1l8q_A Chromosomal replication 95.2 0.085 2.9E-06 53.8 10.8 37 60-101 37-73 (324)
116 1d2n_A N-ethylmaleimide-sensit 95.0 0.11 3.6E-06 51.6 10.4 18 61-78 65-82 (272)
117 2w58_A DNAI, primosome compone 94.9 0.19 6.4E-06 47.2 11.6 18 61-78 55-72 (202)
118 3dm5_A SRP54, signal recogniti 94.9 0.046 1.6E-06 58.4 7.8 127 62-217 102-232 (443)
119 3u4q_A ATP-dependent helicase/ 94.8 0.035 1.2E-06 67.4 7.5 69 45-115 10-79 (1232)
120 2orv_A Thymidine kinase; TP4A 94.8 0.048 1.6E-06 52.9 7.0 40 59-103 18-57 (234)
121 1pjr_A PCRA; DNA repair, DNA r 94.8 0.047 1.6E-06 62.4 8.2 70 44-116 10-79 (724)
122 2z4s_A Chromosomal replication 94.7 0.19 6.6E-06 53.7 12.1 41 168-208 194-236 (440)
123 3h4m_A Proteasome-activating n 94.5 0.024 8.3E-07 56.5 4.4 55 20-77 11-68 (285)
124 2zpa_A Uncharacterized protein 94.5 0.053 1.8E-06 60.7 7.4 112 45-209 175-288 (671)
125 3n70_A Transport activator; si 94.5 0.14 4.8E-06 45.6 8.9 21 58-78 22-42 (145)
126 1gm5_A RECG; helicase, replica 94.4 0.099 3.4E-06 60.1 9.6 94 250-343 401-499 (780)
127 3u61_B DNA polymerase accessor 94.4 0.17 5.7E-06 51.4 10.3 39 168-206 105-143 (324)
128 2p65_A Hypothetical protein PF 94.3 0.17 6E-06 46.1 9.5 19 60-78 43-61 (187)
129 3bos_A Putative DNA replicatio 94.2 0.14 4.7E-06 49.1 8.7 20 59-78 51-70 (242)
130 1jbk_A CLPB protein; beta barr 94.2 0.17 5.9E-06 46.2 9.1 19 60-78 43-61 (195)
131 2qgz_A Helicase loader, putati 94.1 0.14 4.7E-06 52.1 9.1 19 60-78 152-170 (308)
132 2qby_B CDC6 homolog 3, cell di 94.1 0.21 7.1E-06 51.8 10.6 18 61-78 46-63 (384)
133 3syl_A Protein CBBX; photosynt 94.1 0.063 2.1E-06 54.1 6.4 18 61-78 68-85 (309)
134 3e2i_A Thymidine kinase; Zn-bi 94.0 0.07 2.4E-06 51.2 6.0 40 60-104 28-67 (219)
135 2v1u_A Cell division control p 94.0 0.18 6E-06 52.2 9.7 19 60-78 44-62 (387)
136 3eie_A Vacuolar protein sortin 94.0 0.29 1E-05 49.8 11.2 54 19-78 11-69 (322)
137 1w4r_A Thymidine kinase; type 93.9 0.05 1.7E-06 51.4 4.8 39 59-102 19-57 (195)
138 1g5t_A COB(I)alamin adenosyltr 93.8 0.63 2.2E-05 43.8 12.2 135 61-219 29-173 (196)
139 1sxj_E Activator 1 40 kDa subu 93.7 0.33 1.1E-05 49.8 11.2 42 167-209 133-174 (354)
140 2chg_A Replication factor C sm 93.5 0.46 1.6E-05 44.4 11.0 39 167-206 101-139 (226)
141 1fnn_A CDC6P, cell division co 93.4 0.17 5.8E-06 52.5 8.4 17 62-78 46-62 (389)
142 1a5t_A Delta prime, HOLB; zinc 93.1 0.2 6.9E-06 51.4 8.3 34 46-79 3-43 (334)
143 2qby_A CDC6 homolog 1, cell di 93.1 0.62 2.1E-05 47.9 12.2 19 60-78 45-63 (386)
144 3pfi_A Holliday junction ATP-d 92.9 0.94 3.2E-05 46.0 13.1 46 21-78 24-73 (338)
145 4b4t_M 26S protease regulatory 92.9 0.43 1.5E-05 50.8 10.5 57 19-78 174-233 (434)
146 3oiy_A Reverse gyrase helicase 92.5 0.37 1.3E-05 50.6 9.6 80 263-342 61-147 (414)
147 3vfd_A Spastin; ATPase, microt 92.5 0.91 3.1E-05 47.4 12.5 19 60-78 148-166 (389)
148 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.8 2.7E-05 46.6 11.7 52 21-78 7-63 (322)
149 2dr3_A UPF0273 protein PH0284; 92.4 0.33 1.1E-05 46.7 8.4 51 59-115 22-72 (247)
150 2q6t_A DNAB replication FORK h 92.4 0.32 1.1E-05 52.0 8.9 39 60-102 200-238 (444)
151 2r6a_A DNAB helicase, replicat 92.4 0.37 1.3E-05 51.7 9.4 39 60-102 203-241 (454)
152 3b9p_A CG5977-PA, isoform A; A 92.3 0.64 2.2E-05 46.3 10.6 55 21-78 16-72 (297)
153 2w0m_A SSO2452; RECA, SSPF, un 92.0 0.79 2.7E-05 43.4 10.5 22 59-80 22-43 (235)
154 3cf0_A Transitional endoplasmi 91.8 0.53 1.8E-05 47.4 9.3 55 21-78 10-67 (301)
155 4b4t_J 26S protease regulatory 91.6 1.4 4.7E-05 46.3 12.3 56 20-78 142-200 (405)
156 3d8b_A Fidgetin-like protein 1 91.5 0.64 2.2E-05 48.1 9.7 19 60-78 117-135 (357)
157 2qp9_X Vacuolar protein sortin 91.4 0.43 1.5E-05 49.4 8.2 18 61-78 85-102 (355)
158 1njg_A DNA polymerase III subu 91.2 1.2 4.1E-05 42.0 10.7 16 62-77 47-62 (250)
159 4b4t_K 26S protease regulatory 91.1 0.15 5E-06 54.4 4.3 57 19-78 165-224 (428)
160 2p6n_A ATP-dependent RNA helic 91.0 1.3 4.5E-05 41.3 10.5 72 93-175 54-129 (191)
161 2hjv_A ATP-dependent RNA helic 90.8 1.6 5.6E-05 39.2 10.7 73 93-176 35-111 (163)
162 1iqp_A RFCS; clamp loader, ext 90.5 1.1 3.8E-05 44.9 10.2 39 167-206 109-147 (327)
163 2qz4_A Paraplegin; AAA+, SPG7, 90.5 1.5 5E-05 42.5 10.8 53 23-78 3-57 (262)
164 4b4t_L 26S protease subunit RP 90.2 0.17 5.9E-06 53.9 3.9 56 20-78 175-233 (437)
165 1sxj_D Activator 1 41 kDa subu 89.9 0.37 1.3E-05 49.2 6.1 39 167-206 132-170 (353)
166 4b4t_H 26S protease regulatory 89.4 0.39 1.3E-05 51.4 5.8 56 20-78 203-261 (467)
167 3pvs_A Replication-associated 89.3 0.38 1.3E-05 51.5 5.8 18 61-78 51-68 (447)
168 1sxj_A Activator 1 95 kDa subu 89.3 0.84 2.9E-05 49.8 8.6 41 167-209 147-189 (516)
169 2eyq_A TRCF, transcription-rep 89.0 0.94 3.2E-05 54.4 9.5 92 249-340 635-731 (1151)
170 2rb4_A ATP-dependent RNA helic 88.9 1.8 6.1E-05 39.5 9.4 71 93-174 34-108 (175)
171 2ehv_A Hypothetical protein PH 88.9 1.1 3.7E-05 43.1 8.3 47 166-212 133-184 (251)
172 2zan_A Vacuolar protein sortin 88.6 0.81 2.8E-05 48.9 7.7 18 61-78 168-185 (444)
173 3hu3_A Transitional endoplasmi 88.6 0.28 9.4E-06 53.3 4.1 42 169-210 298-349 (489)
174 1fuk_A Eukaryotic initiation f 88.4 1.7 5.9E-05 39.1 8.9 73 93-176 30-106 (165)
175 3eaq_A Heat resistant RNA depe 88.4 2.4 8.2E-05 40.1 10.2 71 93-174 31-105 (212)
176 1ls1_A Signal recognition part 88.3 3.3 0.00011 41.5 11.7 49 167-215 179-228 (295)
177 3hjh_A Transcription-repair-co 88.3 1.5 5.2E-05 47.3 9.7 89 59-158 13-117 (483)
178 1w5s_A Origin recognition comp 88.1 3.6 0.00012 42.6 12.4 18 61-78 51-70 (412)
179 2gno_A DNA polymerase III, gam 88.1 1 3.6E-05 45.5 7.8 17 62-78 20-36 (305)
180 1sxj_B Activator 1 37 kDa subu 88.1 0.67 2.3E-05 46.4 6.4 38 168-206 107-144 (323)
181 4ddu_A Reverse gyrase; topoiso 88.1 0.98 3.4E-05 54.0 8.7 93 250-342 105-204 (1104)
182 4a1f_A DNAB helicase, replicat 88.0 0.29 9.8E-06 50.4 3.6 39 59-102 45-83 (338)
183 3uk6_A RUVB-like 2; hexameric 88.0 3.2 0.00011 42.4 11.7 18 61-78 71-88 (368)
184 2cvh_A DNA repair and recombin 87.9 1 3.5E-05 42.4 7.2 34 60-101 20-53 (220)
185 4b4t_I 26S protease regulatory 87.7 4.3 0.00015 42.9 12.4 56 20-78 176-234 (437)
186 2px0_A Flagellar biosynthesis 87.6 1.5 5.3E-05 44.0 8.7 21 60-80 105-125 (296)
187 2l8b_A Protein TRAI, DNA helic 87.5 0.91 3.1E-05 42.2 6.2 135 46-222 35-176 (189)
188 1hqc_A RUVB; extended AAA-ATPa 87.5 3.5 0.00012 41.2 11.5 46 21-78 7-56 (324)
189 3bh0_A DNAB-like replicative h 87.4 1.6 5.6E-05 44.1 8.9 38 60-102 68-105 (315)
190 3t15_A Ribulose bisphosphate c 87.4 1.2 3.9E-05 44.7 7.6 18 61-78 37-54 (293)
191 1jr3_A DNA polymerase III subu 87.0 2.1 7.2E-05 43.8 9.6 17 62-78 40-56 (373)
192 1n0w_A DNA repair protein RAD5 86.6 3.5 0.00012 39.2 10.4 24 59-82 23-46 (243)
193 3cmu_A Protein RECA, recombina 86.5 1.3 4.5E-05 55.6 8.7 46 54-104 1415-1466(2050)
194 2chq_A Replication factor C sm 85.9 0.63 2.2E-05 46.5 4.7 45 21-78 12-56 (319)
195 2ce7_A Cell division protein F 85.5 0.8 2.7E-05 49.4 5.5 56 20-78 10-67 (476)
196 1t5i_A C_terminal domain of A 85.3 3.4 0.00012 37.5 9.1 73 93-176 31-107 (172)
197 1sxj_C Activator 1 40 kDa subu 85.0 1.9 6.7E-05 43.8 8.0 38 167-205 109-146 (340)
198 1t6n_A Probable ATP-dependent 84.9 3.9 0.00013 38.4 9.6 71 267-340 83-164 (220)
199 2zts_A Putative uncharacterize 84.8 0.83 2.8E-05 43.8 4.9 39 60-102 30-68 (251)
200 3cf2_A TER ATPase, transitiona 84.6 0.99 3.4E-05 51.8 6.0 42 168-209 297-348 (806)
201 3i5x_A ATP-dependent RNA helic 83.7 9.2 0.00031 41.6 13.3 98 70-177 318-419 (563)
202 2i4i_A ATP-dependent RNA helic 83.3 4.6 0.00016 41.8 10.2 72 92-174 275-350 (417)
203 1qvr_A CLPB protein; coiled co 82.5 2.7 9.2E-05 48.8 8.7 18 61-78 192-209 (854)
204 2zr9_A Protein RECA, recombina 82.5 3.5 0.00012 42.4 8.7 45 53-102 48-98 (349)
205 2fna_A Conserved hypothetical 82.2 40 0.0014 33.4 16.7 39 169-209 138-179 (357)
206 3k1j_A LON protease, ATP-depen 82.1 8.7 0.0003 42.5 12.4 24 55-78 55-78 (604)
207 2jgn_A DBX, DDX3, ATP-dependen 81.8 2.7 9.1E-05 38.9 6.8 89 69-174 28-120 (185)
208 2ffh_A Protein (FFH); SRP54, s 81.7 3.2 0.00011 43.9 8.1 34 62-100 100-133 (425)
209 3hr8_A Protein RECA; alpha and 81.7 1.6 5.5E-05 45.1 5.7 48 53-105 48-101 (356)
210 1nlf_A Regulatory protein REPA 81.6 4.7 0.00016 39.6 9.0 26 57-82 27-52 (279)
211 2d7d_A Uvrabc system protein B 81.3 15 0.00052 41.0 14.1 78 92-180 444-525 (661)
212 3sqw_A ATP-dependent RNA helic 81.3 13 0.00044 40.7 13.3 78 92-177 287-368 (579)
213 3fe2_A Probable ATP-dependent 81.3 7 0.00024 37.3 9.9 72 265-340 101-182 (242)
214 3co5_A Putative two-component 81.2 1.1 3.7E-05 39.5 3.7 20 57-76 24-43 (143)
215 1r6b_X CLPA protein; AAA+, N-t 81.2 2.3 7.9E-05 48.5 7.4 19 60-78 207-225 (758)
216 1e9r_A Conjugal transfer prote 81.2 1.3 4.6E-05 46.8 5.1 44 59-107 52-95 (437)
217 1xp8_A RECA protein, recombina 80.2 3.8 0.00013 42.4 8.0 46 53-103 61-112 (366)
218 3cf2_A TER ATPase, transitiona 80.1 1.1 3.6E-05 51.6 4.0 54 22-78 473-529 (806)
219 3iuy_A Probable ATP-dependent 79.9 3.5 0.00012 39.0 7.2 72 265-340 93-173 (228)
220 3i32_A Heat resistant RNA depe 79.8 9.6 0.00033 38.1 10.7 71 93-174 28-102 (300)
221 3m6a_A ATP-dependent protease 79.8 1.9 6.6E-05 47.2 5.9 19 60-78 108-126 (543)
222 3e70_C DPA, signal recognition 79.7 9.3 0.00032 38.8 10.6 53 168-220 211-264 (328)
223 1oyw_A RECQ helicase, ATP-depe 79.0 3.3 0.00011 45.1 7.4 74 266-339 65-144 (523)
224 3io5_A Recombination and repai 78.9 2.2 7.5E-05 43.3 5.4 91 62-181 30-124 (333)
225 1yks_A Genome polyprotein [con 78.9 2.5 8.6E-05 44.9 6.3 69 93-174 177-246 (440)
226 1q57_A DNA primase/helicase; d 78.8 4.2 0.00014 43.9 8.2 40 59-102 241-280 (503)
227 3fht_A ATP-dependent RNA helic 78.7 5.6 0.00019 41.0 8.9 71 93-174 266-340 (412)
228 1hv8_A Putative ATP-dependent 78.4 7.8 0.00027 39.0 9.7 74 92-176 237-314 (367)
229 1wp9_A ATP-dependent RNA helic 78.3 8.8 0.0003 40.0 10.4 95 69-177 340-446 (494)
230 2v1x_A ATP-dependent DNA helic 78.2 4.4 0.00015 44.8 8.2 60 265-324 83-144 (591)
231 3ber_A Probable ATP-dependent 78.1 8.9 0.00031 36.9 9.6 71 266-340 111-192 (249)
232 2db3_A ATP-dependent RNA helic 78.0 7.4 0.00025 41.0 9.7 69 95-174 302-374 (434)
233 3bor_A Human initiation factor 78.0 6 0.00021 37.7 8.3 73 265-340 97-179 (237)
234 1xti_A Probable ATP-dependent 77.8 5.8 0.0002 40.6 8.6 75 92-177 249-327 (391)
235 2j37_W Signal recognition part 77.5 16 0.00056 39.4 12.2 35 62-101 103-137 (504)
236 1c4o_A DNA nucleotide excision 77.2 26 0.00088 39.2 14.3 78 92-180 438-519 (664)
237 1j8m_F SRP54, signal recogniti 76.8 8.9 0.00031 38.3 9.3 18 62-79 100-117 (297)
238 2pl3_A Probable ATP-dependent 76.5 7.4 0.00025 36.9 8.4 71 265-340 96-177 (236)
239 1s2m_A Putative ATP-dependent 76.0 7 0.00024 40.1 8.7 72 93-175 258-333 (400)
240 2gxq_A Heat resistant RNA depe 75.8 12 0.00042 34.2 9.6 72 265-340 71-150 (207)
241 3pey_A ATP-dependent RNA helic 75.6 33 0.0011 34.6 13.7 77 92-179 242-322 (395)
242 2yhs_A FTSY, cell division pro 75.4 11 0.00036 40.7 9.8 17 62-78 295-311 (503)
243 3pxi_A Negative regulator of g 75.0 6.2 0.00021 45.0 8.6 105 51-206 504-627 (758)
244 3nwn_A Kinesin-like protein KI 74.8 1.9 6.4E-05 44.6 3.7 26 53-78 96-123 (359)
245 3lda_A DNA repair protein RAD5 74.4 6.4 0.00022 41.2 7.8 42 61-102 179-221 (400)
246 2j0s_A ATP-dependent RNA helic 74.2 8.3 0.00029 39.8 8.7 72 93-175 276-351 (410)
247 2xxa_A Signal recognition part 74.2 3.3 0.00011 44.0 5.5 35 62-100 102-136 (433)
248 1ypw_A Transitional endoplasmi 74.1 11 0.00036 43.4 10.2 19 59-77 237-255 (806)
249 2dhr_A FTSH; AAA+ protein, hex 73.5 5.1 0.00017 43.3 6.9 48 21-77 26-81 (499)
250 3dmn_A Putative DNA helicase; 73.4 52 0.0018 29.6 12.9 115 210-343 8-123 (174)
251 1bg2_A Kinesin; motor protein, 73.3 2.2 7.6E-05 43.4 3.8 25 54-78 70-96 (325)
252 3cmu_A Protein RECA, recombina 73.0 9 0.00031 48.2 9.6 120 59-209 1080-1217(2050)
253 1u0j_A DNA replication protein 73.0 6.5 0.00022 38.7 6.9 44 32-78 73-122 (267)
254 3cmw_A Protein RECA, recombina 72.8 6 0.0002 49.0 8.0 121 61-212 1432-1570(1706)
255 2oxc_A Probable ATP-dependent 72.7 10 0.00035 35.8 8.2 71 265-340 91-172 (230)
256 1vec_A ATP-dependent RNA helic 72.6 9.2 0.00032 35.2 7.8 71 266-340 71-152 (206)
257 3ly5_A ATP-dependent RNA helic 72.1 15 0.0005 35.7 9.4 72 265-340 125-207 (262)
258 3dc4_A Kinesin-like protein NO 72.0 2.4 8.4E-05 43.5 3.7 24 54-77 87-112 (344)
259 1v8k_A Kinesin-like protein KI 72.0 2.5 8.7E-05 44.4 3.9 25 54-78 147-173 (410)
260 4etp_A Kinesin-like protein KA 71.7 2.7 9.4E-05 44.1 4.1 26 53-78 132-159 (403)
261 2y65_A Kinesin, kinesin heavy 71.6 2.5 8.7E-05 43.7 3.8 23 55-77 78-102 (365)
262 4f4c_A Multidrug resistance pr 71.6 4.7 0.00016 49.1 6.7 40 166-205 1233-1272(1321)
263 3b6u_A Kinesin-like protein KI 71.1 2.6 8.8E-05 43.8 3.7 24 54-77 94-119 (372)
264 4a14_A Kinesin, kinesin-like p 71.0 2.7 9.2E-05 43.2 3.8 24 54-77 76-101 (344)
265 2vvg_A Kinesin-2; motor protei 71.0 2.8 9.7E-05 43.1 4.0 23 55-77 83-107 (350)
266 3b85_A Phosphate starvation-in 71.0 3.6 0.00012 38.9 4.5 36 43-78 5-40 (208)
267 1t5c_A CENP-E protein, centrom 70.7 2.8 9.6E-05 43.1 3.9 25 54-78 70-96 (349)
268 1goj_A Kinesin, kinesin heavy 70.6 2.6 9E-05 43.5 3.6 24 55-78 74-99 (355)
269 2h58_A Kinesin-like protein KI 70.6 3 0.0001 42.6 4.0 26 53-78 72-99 (330)
270 2nr8_A Kinesin-like protein KI 70.5 2.9 9.8E-05 43.2 3.9 25 53-77 95-121 (358)
271 3gbj_A KIF13B protein; kinesin 70.5 2.8 9.7E-05 43.2 3.8 26 53-78 84-111 (354)
272 3tbk_A RIG-I helicase domain; 70.4 9.1 0.00031 41.1 8.2 95 70-174 369-476 (555)
273 3t0q_A AGR253WP; kinesin, alph 70.2 2.6 8.7E-05 43.5 3.4 26 53-78 77-104 (349)
274 2zfi_A Kinesin-like protein KI 70.2 3 0.0001 43.2 4.0 25 54-78 82-108 (366)
275 3lre_A Kinesin-like protein KI 70.2 2.7 9.3E-05 43.4 3.6 24 54-77 98-123 (355)
276 1x88_A Kinesin-like protein KI 70.1 2.8 9.6E-05 43.3 3.7 25 54-78 81-107 (359)
277 4ag6_A VIRB4 ATPase, type IV s 69.5 3 0.0001 43.4 3.9 42 59-105 34-75 (392)
278 2heh_A KIF2C protein; kinesin, 69.2 3.1 0.00011 43.4 3.8 25 54-78 127-153 (387)
279 3cob_A Kinesin heavy chain-lik 69.1 2.7 9.4E-05 43.5 3.4 26 53-78 71-98 (369)
280 3u06_A Protein claret segregat 69.0 2.9 0.0001 44.0 3.6 25 53-77 130-156 (412)
281 2wbe_C Bipolar kinesin KRP-130 68.9 3.1 0.00011 43.2 3.7 24 55-78 94-119 (373)
282 1f9v_A Kinesin-like protein KA 68.8 2.6 9E-05 43.3 3.1 26 53-78 76-103 (347)
283 2yjt_D ATP-dependent RNA helic 71.6 1 3.5E-05 40.9 0.0 73 93-176 30-106 (170)
284 2wv9_A Flavivirin protease NS2 68.5 5.7 0.0002 44.7 6.1 68 93-173 410-478 (673)
285 2oca_A DAR protein, ATP-depend 68.1 34 0.0012 36.4 12.2 77 93-179 347-427 (510)
286 2oap_1 GSPE-2, type II secreti 67.9 6.1 0.00021 42.8 6.0 40 35-76 236-276 (511)
287 1kgd_A CASK, peripheral plasma 67.7 2.9 0.0001 38.2 3.0 20 58-77 3-22 (180)
288 3bfn_A Kinesin-like protein KI 67.4 3 0.0001 43.5 3.3 33 46-78 75-117 (388)
289 2owm_A Nckin3-434, related to 67.0 3.7 0.00013 43.6 4.0 25 54-78 129-155 (443)
290 2bjv_A PSP operon transcriptio 66.7 8 0.00027 37.5 6.1 19 59-77 28-46 (265)
291 2ius_A DNA translocase FTSK; n 66.7 7.3 0.00025 42.2 6.2 42 60-102 167-208 (512)
292 3a8t_A Adenylate isopentenyltr 66.4 3 0.0001 42.7 2.9 18 61-78 41-58 (339)
293 2eyu_A Twitching motility prot 65.6 2.8 9.5E-05 41.2 2.5 21 57-77 22-42 (261)
294 1ofh_A ATP-dependent HSL prote 65.3 11 0.00038 37.0 7.0 19 60-78 50-68 (310)
295 1lv7_A FTSH; alpha/beta domain 65.3 8 0.00027 37.3 5.8 55 21-78 7-63 (257)
296 2v6i_A RNA helicase; membrane, 65.3 7 0.00024 41.3 5.7 67 93-172 171-238 (431)
297 2r44_A Uncharacterized protein 65.2 4 0.00014 41.1 3.7 25 53-77 39-63 (331)
298 2rep_A Kinesin-like protein KI 65.2 3.3 0.00011 43.0 3.1 25 54-78 108-134 (376)
299 4f4c_A Multidrug resistance pr 65.1 17 0.00059 44.2 9.8 41 166-206 570-610 (1321)
300 3exa_A TRNA delta(2)-isopenten 65.0 3.1 0.0001 42.2 2.7 18 61-78 4-21 (322)
301 3nbx_X ATPase RAVA; AAA+ ATPas 64.9 8.1 0.00028 41.7 6.2 36 42-77 23-58 (500)
302 2gza_A Type IV secretion syste 64.8 4 0.00014 42.1 3.6 20 57-76 172-191 (361)
303 1qde_A EIF4A, translation init 64.7 9.2 0.00031 35.8 6.0 86 250-340 63-161 (224)
304 1vma_A Cell division protein F 64.5 17 0.00059 36.4 8.2 17 62-78 106-122 (306)
305 1wrb_A DJVLGB; RNA helicase, D 64.5 23 0.00078 33.8 8.9 71 266-340 100-180 (253)
306 2qmh_A HPR kinase/phosphorylas 64.4 2.9 0.0001 39.4 2.2 19 60-78 34-52 (205)
307 3foz_A TRNA delta(2)-isopenten 64.4 3.4 0.00012 41.8 2.9 17 62-78 12-28 (316)
308 1p9r_A General secretion pathw 64.3 6.5 0.00022 41.5 5.2 28 49-76 154-183 (418)
309 4dzz_A Plasmid partitioning pr 64.1 11 0.00038 34.5 6.4 31 144-178 55-85 (206)
310 1tf7_A KAIC; homohexamer, hexa 64.1 19 0.00065 39.0 9.1 126 59-208 280-416 (525)
311 3tau_A Guanylate kinase, GMP k 63.9 4 0.00014 38.3 3.2 20 59-78 7-26 (208)
312 1gku_B Reverse gyrase, TOP-RG; 63.9 9.4 0.00032 45.3 7.0 84 255-340 88-181 (1054)
313 1lvg_A Guanylate kinase, GMP k 63.6 4.1 0.00014 37.9 3.1 19 59-77 3-21 (198)
314 3vaa_A Shikimate kinase, SK; s 63.4 3.3 0.00011 38.4 2.5 20 59-78 24-43 (199)
315 2j41_A Guanylate kinase; GMP, 63.1 3.2 0.00011 38.4 2.3 20 58-77 4-23 (207)
316 2iut_A DNA translocase FTSK; n 62.8 9.5 0.00033 41.8 6.2 42 61-103 215-256 (574)
317 4akg_A Glutathione S-transfera 62.7 11 0.00039 48.9 7.8 49 30-79 890-942 (2695)
318 2z43_A DNA repair and recombin 62.6 7.5 0.00026 39.3 5.1 56 61-116 108-165 (324)
319 2pt7_A CAG-ALFA; ATPase, prote 62.6 3.6 0.00012 41.9 2.7 20 57-76 168-187 (330)
320 2ze6_A Isopentenyl transferase 62.0 4.1 0.00014 39.7 2.9 15 63-77 4-18 (253)
321 3trf_A Shikimate kinase, SK; a 61.9 3.7 0.00013 37.3 2.5 19 60-78 5-23 (185)
322 1ry6_A Internal kinesin; kines 61.2 5.4 0.00019 41.1 3.8 20 59-78 82-103 (360)
323 1qhx_A CPT, protein (chloramph 61.0 3.8 0.00013 37.0 2.3 19 60-78 3-21 (178)
324 3lw7_A Adenylate kinase relate 60.9 3.6 0.00012 36.6 2.2 17 62-78 3-19 (179)
325 3ney_A 55 kDa erythrocyte memb 60.8 4.7 0.00016 37.8 3.0 21 58-78 17-37 (197)
326 2whx_A Serine protease/ntpase/ 60.8 15 0.0005 40.8 7.5 68 93-173 355-423 (618)
327 3vkg_A Dynein heavy chain, cyt 60.8 14 0.00048 48.6 8.2 48 30-78 873-924 (3245)
328 3b5x_A Lipid A export ATP-bind 60.7 12 0.00041 41.1 6.8 42 166-208 496-537 (582)
329 2jlq_A Serine protease subunit 60.6 9.9 0.00034 40.3 5.9 68 93-173 188-256 (451)
330 3u4q_B ATP-dependent helicase/ 60.4 6.2 0.00021 47.4 4.7 38 64-103 5-42 (1166)
331 3iij_A Coilin-interacting nucl 60.4 2.8 9.7E-05 38.0 1.4 21 58-78 9-29 (180)
332 1cr0_A DNA primase/helicase; R 59.8 7.1 0.00024 38.6 4.3 39 59-101 34-72 (296)
333 2ykg_A Probable ATP-dependent 59.6 10 0.00035 42.4 6.1 79 92-177 397-488 (696)
334 2l82_A Designed protein OR32; 59.5 40 0.0014 27.9 7.9 56 269-324 5-60 (162)
335 1zp6_A Hypothetical protein AT 59.5 2.9 9.9E-05 38.2 1.3 19 58-76 7-25 (191)
336 2xau_A PRE-mRNA-splicing facto 59.3 42 0.0014 38.2 11.2 75 93-174 303-393 (773)
337 3hws_A ATP-dependent CLP prote 59.0 7.6 0.00026 39.8 4.5 20 59-78 50-69 (363)
338 3p32_A Probable GTPase RV1496/ 58.9 1.1E+02 0.0038 30.8 13.5 17 62-78 81-97 (355)
339 3bgw_A DNAB-like replicative h 58.7 7.9 0.00027 41.2 4.6 38 60-102 197-234 (444)
340 2r2a_A Uncharacterized protein 58.7 5.8 0.0002 37.2 3.2 19 62-80 7-25 (199)
341 1kht_A Adenylate kinase; phosp 58.6 4.5 0.00015 36.7 2.4 19 59-77 2-20 (192)
342 3tr0_A Guanylate kinase, GMP k 58.5 5.7 0.0002 36.6 3.2 19 59-77 6-24 (205)
343 2x8a_A Nuclear valosin-contain 58.1 1.8 6.3E-05 42.8 -0.4 53 22-77 6-61 (274)
344 1kag_A SKI, shikimate kinase I 57.4 5.1 0.00018 35.8 2.5 18 60-77 4-21 (173)
345 3a00_A Guanylate kinase, GMP k 57.4 6.4 0.00022 36.0 3.2 17 61-77 2-18 (186)
346 1m7g_A Adenylylsulfate kinase; 57.4 6.1 0.00021 36.9 3.2 32 46-78 12-43 (211)
347 3crm_A TRNA delta(2)-isopenten 57.4 5.3 0.00018 40.6 2.9 17 62-78 7-23 (323)
348 1z6g_A Guanylate kinase; struc 57.3 6.5 0.00022 37.2 3.4 19 58-76 21-39 (218)
349 2qor_A Guanylate kinase; phosp 57.2 5.2 0.00018 37.2 2.6 20 58-77 10-29 (204)
350 2l82_A Designed protein OR32; 57.2 79 0.0027 26.1 9.3 53 272-324 85-137 (162)
351 1tue_A Replication protein E1; 57.1 14 0.00049 34.9 5.6 44 33-78 29-76 (212)
352 2z0m_A 337AA long hypothetical 56.7 19 0.00064 35.6 7.0 70 92-176 219-292 (337)
353 3dkp_A Probable ATP-dependent 56.7 7.1 0.00024 37.3 3.6 73 265-340 97-181 (245)
354 2r8r_A Sensor protein; KDPD, P 56.0 11 0.00036 36.3 4.6 24 62-85 8-31 (228)
355 3hix_A ALR3790 protein; rhodan 55.5 13 0.00046 30.4 4.7 39 262-300 48-87 (106)
356 1znw_A Guanylate kinase, GMP k 55.2 7.1 0.00024 36.4 3.2 22 56-77 16-37 (207)
357 3eph_A TRNA isopentenyltransfe 55.0 5.8 0.0002 41.6 2.7 16 63-78 5-20 (409)
358 1y63_A LMAJ004144AAA protein; 55.0 5.8 0.0002 36.3 2.5 19 59-77 9-27 (184)
359 1u94_A RECA protein, recombina 55.0 11 0.00037 38.8 4.8 38 60-102 63-100 (356)
360 2ewv_A Twitching motility prot 55.0 5 0.00017 41.6 2.3 20 58-77 134-153 (372)
361 4gl2_A Interferon-induced heli 54.9 6.5 0.00022 44.1 3.4 75 93-174 400-488 (699)
362 1nks_A Adenylate kinase; therm 54.9 9.8 0.00033 34.4 4.1 16 62-77 3-18 (194)
363 3jvv_A Twitching mobility prot 54.8 5.9 0.0002 40.8 2.7 18 59-76 122-139 (356)
364 1ly1_A Polynucleotide kinase; 54.6 5.4 0.00018 35.8 2.2 17 62-78 4-20 (181)
365 3d3q_A TRNA delta(2)-isopenten 54.5 6.4 0.00022 40.3 2.9 17 62-78 9-25 (340)
366 1ex7_A Guanylate kinase; subst 54.4 6.2 0.00021 36.6 2.6 16 61-76 2-17 (186)
367 3kb2_A SPBC2 prophage-derived 54.4 5.4 0.00019 35.4 2.2 17 62-78 3-19 (173)
368 4gp7_A Metallophosphoesterase; 54.3 5 0.00017 36.3 1.9 20 59-78 8-27 (171)
369 2jtq_A Phage shock protein E; 54.1 28 0.00094 27.0 6.2 38 264-301 39-76 (85)
370 2yan_A Glutaredoxin-3; oxidore 54.1 43 0.0015 27.1 7.6 55 257-312 8-68 (105)
371 3sxu_A DNA polymerase III subu 54.0 29 0.00098 30.9 6.8 82 251-344 24-105 (150)
372 1ojl_A Transcriptional regulat 54.0 6.7 0.00023 39.3 3.0 19 59-77 24-42 (304)
373 2i1q_A DNA repair and recombin 53.2 13 0.00045 37.2 5.1 64 53-116 86-166 (322)
374 3eiq_A Eukaryotic initiation f 53.0 45 0.0015 34.0 9.3 73 265-340 107-189 (414)
375 4eun_A Thermoresistant glucoki 52.9 6.4 0.00022 36.4 2.5 20 59-78 28-47 (200)
376 1w36_B RECB, exodeoxyribonucle 52.9 16 0.00056 43.8 6.6 54 62-115 18-78 (1180)
377 3fmo_B ATP-dependent RNA helic 52.6 15 0.00051 36.5 5.3 84 250-340 143-241 (300)
378 3zyw_A Glutaredoxin-3; metal b 52.6 47 0.0016 27.5 7.7 52 256-308 6-63 (111)
379 1s96_A Guanylate kinase, GMP k 52.4 6.6 0.00022 37.4 2.5 21 57-77 13-33 (219)
380 4h1g_A Maltose binding protein 52.1 8.6 0.00029 43.5 3.8 25 53-77 454-480 (715)
381 1z5z_A Helicase of the SNF2/RA 52.0 54 0.0018 32.0 9.2 95 68-177 92-192 (271)
382 3mwy_W Chromo domain-containin 51.7 69 0.0023 36.5 11.4 94 70-178 554-653 (800)
383 4a2p_A RIG-I, retinoic acid in 51.6 20 0.00067 38.5 6.5 72 266-341 55-137 (556)
384 1knq_A Gluconate kinase; ALFA/ 51.6 5.8 0.0002 35.6 1.9 18 60-77 8-25 (175)
385 4a2q_A RIG-I, retinoic acid in 51.5 23 0.0008 40.4 7.4 71 266-340 296-377 (797)
386 1fuu_A Yeast initiation factor 51.1 64 0.0022 32.4 10.1 71 265-340 88-168 (394)
387 3iwh_A Rhodanese-like domain p 51.0 8.7 0.0003 31.7 2.7 38 263-300 53-90 (103)
388 3ipz_A Monothiol glutaredoxin- 51.0 58 0.002 26.7 8.0 55 255-310 7-67 (109)
389 1xjc_A MOBB protein homolog; s 51.0 15 0.00051 33.4 4.6 24 62-86 6-29 (169)
390 3cm0_A Adenylate kinase; ATP-b 50.9 5.2 0.00018 36.3 1.4 20 59-78 3-22 (186)
391 3o8b_A HCV NS3 protease/helica 50.6 15 0.0005 41.2 5.3 66 93-173 396-461 (666)
392 3rc3_A ATP-dependent RNA helic 50.2 35 0.0012 38.3 8.3 73 96-180 323-401 (677)
393 3g5j_A Putative ATP/GTP bindin 50.1 22 0.00075 30.0 5.4 46 255-301 78-125 (134)
394 1ixz_A ATP-dependent metallopr 50.0 6.9 0.00024 37.7 2.2 53 20-77 10-66 (254)
395 4fcw_A Chaperone protein CLPB; 49.8 8.6 0.0003 38.0 3.0 17 62-78 49-65 (311)
396 2z83_A Helicase/nucleoside tri 49.5 10 0.00034 40.4 3.6 68 93-173 190-258 (459)
397 3l9o_A ATP-dependent RNA helic 49.5 14 0.00047 44.1 5.1 80 250-340 211-296 (1108)
398 1tev_A UMP-CMP kinase; ploop, 49.2 6.7 0.00023 35.6 1.9 19 60-78 3-21 (196)
399 2bdt_A BH3686; alpha-beta prot 49.2 7.4 0.00025 35.5 2.2 17 62-78 4-20 (189)
400 1rj9_A FTSY, signal recognitio 48.5 16 0.00054 36.6 4.7 19 60-78 102-120 (304)
401 1f2t_A RAD50 ABC-ATPase; DNA d 48.4 7.9 0.00027 34.2 2.2 15 62-76 25-39 (149)
402 3gk5_A Uncharacterized rhodane 48.2 12 0.00043 30.8 3.3 38 263-300 52-89 (108)
403 3nwj_A ATSK2; P loop, shikimat 48.2 12 0.0004 36.4 3.6 21 58-78 46-66 (250)
404 1um8_A ATP-dependent CLP prote 47.8 8.3 0.00028 39.6 2.6 19 60-78 72-90 (376)
405 2fsf_A Preprotein translocase 47.8 39 0.0013 38.7 8.1 54 265-324 114-171 (853)
406 1gmx_A GLPE protein; transfera 47.4 21 0.00073 29.2 4.7 43 258-301 51-94 (108)
407 3qf7_A RAD50; ABC-ATPase, ATPa 47.3 7.7 0.00026 40.0 2.2 17 62-78 25-41 (365)
408 3t61_A Gluconokinase; PSI-biol 47.2 8.1 0.00028 35.7 2.2 18 61-78 19-36 (202)
409 2c95_A Adenylate kinase 1; tra 47.1 9.1 0.00031 34.8 2.5 20 59-78 8-27 (196)
410 3lnc_A Guanylate kinase, GMP k 47.0 8.2 0.00028 36.6 2.2 19 59-77 26-44 (231)
411 2rhm_A Putative kinase; P-loop 47.0 8.2 0.00028 35.1 2.1 19 60-78 5-23 (193)
412 2c9o_A RUVB-like 1; hexameric 46.7 10 0.00035 40.3 3.1 18 61-78 64-81 (456)
413 3uie_A Adenylyl-sulfate kinase 46.3 10 0.00035 35.0 2.7 31 46-77 12-42 (200)
414 1q0u_A Bstdead; DEAD protein, 45.7 23 0.00079 32.9 5.2 71 266-340 72-156 (219)
415 3asz_A Uridine kinase; cytidin 45.6 8.2 0.00028 35.8 1.9 19 59-77 5-23 (211)
416 2yvu_A Probable adenylyl-sulfa 45.4 8.7 0.0003 34.9 2.1 20 59-78 12-31 (186)
417 3c8u_A Fructokinase; YP_612366 45.2 7.2 0.00024 36.4 1.4 17 60-76 22-38 (208)
418 1iy2_A ATP-dependent metallopr 45.2 9.2 0.00031 37.4 2.3 54 21-77 35-90 (278)
419 3kta_A Chromosome segregation 45.1 9 0.00031 34.6 2.1 16 62-77 28-43 (182)
420 2r62_A Cell division protease 45.0 5 0.00017 38.9 0.3 53 21-78 6-62 (268)
421 3foj_A Uncharacterized protein 44.7 13 0.00045 30.1 2.8 37 264-300 54-90 (100)
422 2f1r_A Molybdopterin-guanine d 44.3 9.5 0.00033 34.7 2.1 17 62-78 4-20 (171)
423 2v54_A DTMP kinase, thymidylat 44.3 11 0.00036 34.6 2.5 19 59-77 3-21 (204)
424 4a74_A DNA repair and recombin 44.3 11 0.00037 35.3 2.6 20 59-78 24-43 (231)
425 3b9q_A Chloroplast SRP recepto 44.0 17 0.00059 36.3 4.2 18 61-78 101-118 (302)
426 3fb4_A Adenylate kinase; psych 43.9 9.9 0.00034 35.4 2.2 17 62-78 2-18 (216)
427 1cke_A CK, MSSA, protein (cyti 43.8 9.8 0.00033 35.6 2.2 17 61-77 6-22 (227)
428 2bwj_A Adenylate kinase 5; pho 43.7 11 0.00038 34.3 2.5 19 59-77 11-29 (199)
429 3tif_A Uncharacterized ABC tra 43.7 11 0.00037 36.2 2.5 52 213-275 153-204 (235)
430 3eme_A Rhodanese-like domain p 43.7 13 0.00045 30.2 2.7 37 264-300 54-90 (103)
431 2plr_A DTMP kinase, probable t 43.6 8.7 0.0003 35.4 1.8 19 59-77 3-21 (213)
432 1np6_A Molybdopterin-guanine d 43.6 22 0.00076 32.3 4.5 24 62-86 8-31 (174)
433 2fsx_A RV0390, COG0607: rhodan 43.5 34 0.0012 29.8 5.7 38 264-301 78-116 (148)
434 1via_A Shikimate kinase; struc 43.5 11 0.00037 33.8 2.4 17 62-78 6-22 (175)
435 1aky_A Adenylate kinase; ATP:A 43.5 11 0.00038 35.3 2.5 19 60-78 4-22 (220)
436 1wv9_A Rhodanese homolog TT165 43.5 19 0.00064 28.7 3.6 37 264-301 52-88 (94)
437 2qt1_A Nicotinamide riboside k 43.4 5.3 0.00018 37.1 0.2 19 59-77 20-38 (207)
438 1qf9_A UMP/CMP kinase, protein 43.3 10 0.00034 34.3 2.1 17 62-78 8-24 (194)
439 1ye8_A Protein THEP1, hypothet 43.3 13 0.00046 33.8 3.0 16 62-77 2-17 (178)
440 1e6c_A Shikimate kinase; phosp 43.2 10 0.00036 33.6 2.2 18 61-78 3-20 (173)
441 2pez_A Bifunctional 3'-phospho 43.2 9.7 0.00033 34.3 2.0 19 59-77 4-22 (179)
442 3auy_A DNA double-strand break 43.1 9.5 0.00032 39.3 2.1 15 63-77 28-42 (371)
443 2v9p_A Replication protein E1; 43.0 12 0.0004 37.7 2.7 19 59-77 125-143 (305)
444 2va8_A SSO2462, SKI2-type heli 43.0 66 0.0023 35.9 9.3 77 92-175 251-363 (715)
445 1nij_A Hypothetical protein YJ 42.8 12 0.00042 37.6 2.8 33 63-102 7-39 (318)
446 1zd8_A GTP:AMP phosphotransfer 42.7 10 0.00035 35.8 2.1 18 60-77 7-24 (227)
447 2iyv_A Shikimate kinase, SK; t 42.5 12 0.00042 33.7 2.6 18 61-78 3-20 (184)
448 3b6e_A Interferon-induced heli 42.4 16 0.00055 33.5 3.5 55 266-324 82-140 (216)
449 2i3b_A HCR-ntpase, human cance 42.3 15 0.00053 33.9 3.2 42 166-210 103-146 (189)
450 3dl0_A Adenylate kinase; phosp 42.3 11 0.00037 35.1 2.2 17 62-78 2-18 (216)
451 1v5w_A DMC1, meiotic recombina 42.2 21 0.00072 36.3 4.6 43 61-103 123-166 (343)
452 1zu4_A FTSY; GTPase, signal re 41.9 21 0.00071 36.0 4.4 17 62-78 107-123 (320)
453 3ilm_A ALR3790 protein; rhodan 41.8 24 0.00083 30.7 4.3 40 261-300 51-91 (141)
454 1in4_A RUVB, holliday junction 41.8 14 0.00048 37.3 3.2 18 61-78 52-69 (334)
455 1ukz_A Uridylate kinase; trans 41.7 11 0.00039 34.6 2.2 16 62-77 17-32 (203)
456 1zuh_A Shikimate kinase; alpha 41.7 12 0.00041 33.3 2.3 18 61-78 8-25 (168)
457 1zak_A Adenylate kinase; ATP:A 41.6 12 0.00042 35.0 2.5 19 60-78 5-23 (222)
458 3tqc_A Pantothenate kinase; bi 41.5 43 0.0015 33.7 6.7 15 63-77 95-109 (321)
459 2if2_A Dephospho-COA kinase; a 41.5 11 0.00038 34.7 2.1 16 62-77 3-18 (204)
460 1gvn_B Zeta; postsegregational 41.5 9.2 0.00031 37.9 1.6 17 62-78 35-51 (287)
461 2cbz_A Multidrug resistance-as 41.5 10 0.00034 36.5 1.9 18 59-76 30-47 (237)
462 2jaq_A Deoxyguanosine kinase; 41.4 11 0.00038 34.4 2.2 16 62-77 2-17 (205)
463 1jjv_A Dephospho-COA kinase; P 41.2 11 0.00039 34.7 2.2 15 63-77 5-19 (206)
464 2pt5_A Shikimate kinase, SK; a 41.0 12 0.0004 33.1 2.2 17 62-78 2-18 (168)
465 1tf5_A Preprotein translocase 40.8 64 0.0022 36.9 8.5 69 265-339 123-208 (844)
466 3fmp_B ATP-dependent RNA helic 40.7 5.8 0.0002 42.2 0.0 70 93-173 333-406 (479)
467 2cdn_A Adenylate kinase; phosp 40.7 12 0.00041 34.4 2.2 18 61-78 21-38 (201)
468 4a2w_A RIG-I, retinoic acid in 40.6 31 0.0011 40.3 6.2 88 249-340 274-377 (936)
469 1g8p_A Magnesium-chelatase 38 40.4 12 0.00042 37.5 2.5 19 60-78 45-63 (350)
470 1tq1_A AT5G66040, senescence-a 40.2 22 0.00074 30.3 3.7 39 263-301 79-118 (129)
471 2wwf_A Thymidilate kinase, put 39.7 13 0.00045 34.2 2.4 19 59-77 9-27 (212)
472 1c9k_A COBU, adenosylcobinamid 39.5 17 0.00057 33.5 2.9 32 63-103 2-33 (180)
473 3nh6_A ATP-binding cassette SU 39.5 11 0.00039 37.7 2.0 18 59-76 79-96 (306)
474 2bbw_A Adenylate kinase 4, AK4 39.3 13 0.00043 35.7 2.2 18 60-77 27-44 (246)
475 2pbr_A DTMP kinase, thymidylat 39.3 13 0.00044 33.6 2.2 15 63-77 3-17 (195)
476 3fkq_A NTRC-like two-domain pr 39.0 39 0.0013 34.6 6.1 32 64-100 148-179 (373)
477 1nn5_A Similar to deoxythymidy 38.9 14 0.00048 34.1 2.4 19 59-77 8-26 (215)
478 1sgw_A Putative ABC transporte 38.9 15 0.00051 34.7 2.6 18 59-76 34-51 (214)
479 2ghi_A Transport protein; mult 38.4 15 0.0005 35.9 2.5 18 59-76 45-62 (260)
480 2og2_A Putative signal recogni 38.2 23 0.00079 36.3 4.1 17 62-78 159-175 (359)
481 2pze_A Cystic fibrosis transme 38.1 15 0.00051 35.0 2.5 18 59-76 33-50 (229)
482 2k0z_A Uncharacterized protein 38.0 36 0.0012 27.9 4.7 39 263-301 53-91 (110)
483 1e4v_A Adenylate kinase; trans 38.0 13 0.00046 34.5 2.1 17 62-78 2-18 (214)
484 1ak2_A Adenylate kinase isoenz 38.0 14 0.00048 35.0 2.3 20 59-78 15-34 (233)
485 2ff7_A Alpha-hemolysin translo 37.9 15 0.00052 35.5 2.5 18 59-76 34-51 (247)
486 2z0h_A DTMP kinase, thymidylat 37.8 14 0.00048 33.5 2.2 16 63-78 3-18 (197)
487 1uf9_A TT1252 protein; P-loop, 37.8 13 0.00046 33.9 2.1 16 62-77 10-25 (203)
488 3be4_A Adenylate kinase; malar 37.6 15 0.00052 34.3 2.4 19 60-78 5-23 (217)
489 3gfo_A Cobalt import ATP-bindi 37.5 15 0.00051 36.2 2.4 18 59-76 33-50 (275)
490 2vli_A Antibiotic resistance p 37.5 11 0.00039 33.8 1.5 20 59-78 4-23 (183)
491 3a4m_A L-seryl-tRNA(SEC) kinas 37.5 14 0.00047 35.8 2.2 18 61-78 5-22 (260)
492 3qks_A DNA double-strand break 37.2 15 0.0005 34.3 2.2 16 62-77 25-40 (203)
493 1mv5_A LMRA, multidrug resista 36.9 11 0.00037 36.3 1.3 18 59-76 27-44 (243)
494 3tlx_A Adenylate kinase 2; str 36.9 17 0.00057 34.9 2.6 19 60-78 29-47 (243)
495 3sr0_A Adenylate kinase; phosp 36.6 19 0.00065 33.8 2.9 16 63-78 3-18 (206)
496 1g6h_A High-affinity branched- 36.6 16 0.00055 35.5 2.5 18 59-76 32-49 (257)
497 2v3c_C SRP54, signal recogniti 36.6 18 0.00063 38.1 3.1 34 62-100 101-134 (432)
498 3f9v_A Minichromosome maintena 36.6 15 0.00051 40.6 2.5 15 62-76 329-343 (595)
499 1nkt_A Preprotein translocase 36.5 75 0.0026 36.6 8.2 54 265-324 151-208 (922)
500 1rz3_A Hypothetical protein rb 36.5 15 0.0005 34.0 2.1 17 61-77 23-39 (201)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-63 Score=541.76 Aligned_cols=368 Identities=34% Similarity=0.583 Sum_probs=337.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC---CCCCeEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~---~~~g~~~LI 98 (621)
..+|++++|++.++++|.++||..|||+|+++||.++.|+|+++.|+||||||++|++|+++.+.... ...++++||
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999987642 234678999
Q ss_pred EcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 99 L~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
|+|||+|+.|+++.+++++...++++.+++||.....+...+..+++|+|+|||+|.+++.. ..+.+.++++||+||||
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEAD 213 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHh
Confidence 99999999999999999999889999999999999988888889999999999999999887 45779999999999999
Q ss_pred cccCCChHHHHHHHHHhc--ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHH
Q 007018 179 CLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l--~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (621)
+++++||...+..|+..+ +..+|+++||||+|+.+..++..++.+|..+.+.........+.+.+..+....|...|.
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 293 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLI 293 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHH
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHH
Confidence 999999999999999885 678999999999999999999999999998888777667778888999999999999999
Q ss_pred HHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCC
Q 007018 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (621)
Q Consensus 257 ~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~ 336 (621)
.++... ..++||||+|+..++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 294 ~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 294 EILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 998875 34599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCC
Q 007018 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 337 ~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~-~e~~~l~~l~~~l~~~~~~~p 393 (621)
+||+||+|.++..|+||+||+||+|+.|.+++|+++ ++...+.++...+.......|
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999996 466677777766655444433
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-59 Score=505.43 Aligned_cols=368 Identities=32% Similarity=0.562 Sum_probs=339.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|++|+|++.++++|.+.||..|+|+|.++++.++.|+++++.++||||||++|++|+++.+... ..+.++|||+|
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAP 113 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcC
Confidence 4689999999999999999999999999999999999999999999999999999999999887532 24678999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|++|+.|+++.++.++...++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999999999999999999988888888899999999999999887 46778999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-HHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMIR 260 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~~l~ 260 (621)
+++|...+..++..++..+|++++|||+|+.+.+++..++.+|..+.+.........+.+.+..+.... +...|..++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988777666666667777777776554 7788888887
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~ 340 (621)
.. ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 350 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE
Confidence 65 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 007018 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 341 ~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~ 394 (621)
||+|.++..|+||+||+||.|+.|.+++|+++.|...+.+++.+++..+...|.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999988776654
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.2e-59 Score=503.55 Aligned_cols=369 Identities=31% Similarity=0.532 Sum_probs=331.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC---------
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--------- 90 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~--------- 90 (621)
+...+|++++|++.++++|..+||..|||+|.++||.++.|+|+++.||||||||++|++|+++.+.....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 33567999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred -------CCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC
Q 007018 91 -------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163 (621)
Q Consensus 91 -------~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~ 163 (621)
..++++|||+||++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~ 170 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GK 170 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TS
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CC
Confidence 1246799999999999999999999998889999999999999988888888999999999999999876 45
Q ss_pred CCcCCcceEEEeccccccCCChHHHHHHHHHh--ccc--CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCc
Q 007018 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (621)
Q Consensus 164 ~~l~~l~~vViDEah~l~~~gf~~~l~~il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~ 239 (621)
+.+.++++|||||||++.+++|...+..++.. ++. .+|++++|||+|+.+..++..++.+|..+.+.......+.+
T Consensus 171 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 171 IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI 250 (417)
T ss_dssp BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSE
T ss_pred cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCc
Confidence 77899999999999999999999999999885 333 67899999999999999999999999888877766667788
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 007018 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (621)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (621)
.+.+..+....+...+..++... ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 251 ~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~v 329 (417)
T 2i4i_A 251 TQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPI 329 (417)
T ss_dssp EEEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCE
T ss_pred eEEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCE
Confidence 88888888888998888888764 45788999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCc
Q 007018 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (621)
Q Consensus 320 LV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~ 390 (621)
||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.|...+.++..++.....
T Consensus 330 lvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 330 LVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp EEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred EEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999888888776654333
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.5e-57 Score=484.21 Aligned_cols=371 Identities=30% Similarity=0.511 Sum_probs=334.7
Q ss_pred ccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEE
Q 007018 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (621)
Q Consensus 18 ~~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~L 97 (621)
......+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|++..+... ..+.++|
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~l 93 (400)
T 1s2m_A 16 LNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQAL 93 (400)
T ss_dssp -----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEE
T ss_pred cccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999887643 2456899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
|++||++|+.|+++.+++++...++.+..++|+.....+...+..+++|+|+||+++.+++.. ....+.++++||||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCc
Confidence 999999999999999999998889999999999998888777788999999999999988876 3567899999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHH
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
|++.+.+|...+..++..++...|++++|||+|..+..+....+.+|..+.+... .....+...+..+....+...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHH
Confidence 9999988999999999999999999999999999999999999988876655433 334566777777888888888888
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
++... .++++||||+++.+++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 252 ~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~ 329 (400)
T 1s2m_A 252 LFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNV 329 (400)
T ss_dssp HHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEE
T ss_pred HHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCE
Confidence 88765 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 007018 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 338 VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~ 394 (621)
||+|++|.++..|+||+||+||.|+.|.|++|++++|...+..++..++.++...|.
T Consensus 330 Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 330 VINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp EEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 999999999999999999999999999999999999999999999999988776653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-57 Score=489.02 Aligned_cols=369 Identities=33% Similarity=0.574 Sum_probs=324.2
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|++++|++.++++|.+.||..|+|+|.++++.++.|+++++.|+||||||++|++|+++.+... ..+.++||++|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEEEeC
Confidence 3689999999999999999999999999999999999999999999999999999999999987643 24668999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|++|+.|+.+.+++++...++.+..++||.....+...+. .+++|+|+||++|++++.. ..+.+.++++|||||||++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHh
Confidence 9999999999999999999999999999999888877775 7899999999999999887 4677889999999999999
Q ss_pred cCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-HHHHHHHHH
Q 007018 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMI 259 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~~l 259 (621)
.+.+|...+..++..++..+|++++|||+++.+..+...++.+|..+.+.........+...+..+...+ +...+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877776666677777777776554 777777777
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 765 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCCH
Q 007018 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 340 ~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
+|++|.++..|+||+||+||.|+.|.|++|+++.|...+.+++.+++..+...|..
T Consensus 354 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999888776644
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=8.8e-56 Score=473.86 Aligned_cols=369 Identities=29% Similarity=0.506 Sum_probs=330.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+.+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||+|||++|++|+++.+... ..+.++||++|
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 84 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCH 84 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999887542 23568999999
Q ss_pred hHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
|++|+.|+.+.++++.... ++.+..++||.....+...+. ..++|+|+||+++..++.. ..+.+.++++||+||||+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDK 163 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHH
Confidence 9999999999999998776 799999999998877776664 4589999999999998876 456789999999999999
Q ss_pred ccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCC-CCCCceEEEEEcchhhHHHHHHH
Q 007018 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAALLY 257 (621)
Q Consensus 180 l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~~~~~~~~~~~~~k~~~L~~ 257 (621)
+.+ .++...+..++...+..+|++++|||+++.+..++..++.+|..+.+..... ....+...+..+....+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (391)
T 1xti_A 164 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFD 243 (391)
T ss_dssp HTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHH
T ss_pred HhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHH
Confidence 987 5788899999999999999999999999999999999999998777665433 33567778888888889999988
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
++... .++++||||+++.+++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 244 ~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~ 321 (391)
T 1xti_A 244 LLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI 321 (391)
T ss_dssp HHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEE
T ss_pred HHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCE
Confidence 88875 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc-cHHHHHHHHHHhCCCCcCCCCH
Q 007018 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 338 VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
||++++|.++..|+||+||+||.|+.|.+++|+++. +..++.+++..++.++...|..
T Consensus 322 Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 322 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 999999999999999999999999999999999986 5567888888888777766643
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.1e-55 Score=476.14 Aligned_cols=365 Identities=31% Similarity=0.539 Sum_probs=325.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
..+|++++|++.++++|.++||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.++|||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil 101 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 101 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEEE
Confidence 568999999999999999999999999999999999997 9999999999999999999999988653 245689999
Q ss_pred cchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
+||++|+.|+++.+++++... ++.+....++...... ....++|+|+||+++.+++.....+.+.++++|||||||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999999999999999998764 6888888888765432 245689999999999999977566778999999999999
Q ss_pred cccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHH
Q 007018 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALL 256 (621)
Q Consensus 179 ~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~ 256 (621)
++.+ .++...+..+...++..+|++++|||+++.+..++...+.+|..+.+.........+...+..+.. ..+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 258 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 258 (412)
T ss_dssp HHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHH
T ss_pred HHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHH
Confidence 9987 789999999999999999999999999999999999999999988887777777777777777654 45777777
Q ss_pred HHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCC
Q 007018 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (621)
Q Consensus 257 ~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~ 336 (621)
.++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 259 ~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 259 NLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred HHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 777765 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC------CChhHHHHHhcccCCCCCccEEEEEecccc-HHHHHHHHHHhCCCCcCCC
Q 007018 337 NVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 337 ~VI~~d~P------~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e-~~~l~~l~~~l~~~~~~~p 393 (621)
+||+||+| .+...|+||+||+||.|+.|.+++++.+.+ ..++..++..++..+...+
T Consensus 337 ~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 337 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp EEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred EEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999 467899999999999999999999999764 7888899988887766654
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-55 Score=463.41 Aligned_cols=359 Identities=34% Similarity=0.641 Sum_probs=327.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
...+|++++|++.+.++|.++||..|+|+|.++++.++.+ +++++.+|||||||++|++|+++.+... .+.++||+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil 80 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIIL 80 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEE
Confidence 4568999999999999999999999999999999999988 7999999999999999999999887542 46789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+|+++|+.|+.+.++.+....++.+..++||.....+...+. +++|+|+||+++.+++.. ..+.+.++++||+||||.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchH
Confidence 999999999999999998888899999999998877766655 699999999999998876 456789999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHH
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (621)
+.+++|...+..++..++...+++++|||+++.+..+...++.++..+.... ...+...+..+....+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888877665433 346777888888888888888877
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
. ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 5 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 340 ~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
++++|.++..|+||+||+||.|+.|.+++++++.|...+..++..++..+..
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 363 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKK 363 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCC
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999999999988876654
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-55 Score=498.87 Aligned_cols=371 Identities=33% Similarity=0.518 Sum_probs=316.7
Q ss_pred CCCCCccCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC--C
Q 007018 20 SKSGGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--Q 91 (621)
Q Consensus 20 ~~~~~f~~l~----L~~~l~~~l~~~g~~~ptpiQ~~aip~il--~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~--~ 91 (621)
....+|+++. |+++++++|..+||..|||+|.++|+.++ .|+|+++.||||||||++|++|+++.+..... .
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3456777775 99999999999999999999999999999 78999999999999999999999999876432 2
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhc----cCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCc
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSL 166 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~----~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l 166 (621)
.+.++|||+||++|+.|+++.++.+.. ...+.+..++||.....+...+. .+++|+|+||++|++++.......+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 356899999999999999999998763 34577899999999888877774 4899999999999999876434568
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhccc-------CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCC----CC
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KI 235 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~-------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~----~~ 235 (621)
..+++|||||||++++++|...+..|+..++. .+|+++||||+|+.+..++..++.+|..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 89999999999999999999999999887753 67999999999999999999999988777665422 22
Q ss_pred CCCceEEEEEcch-hhHHHHHHHHHHHhc---cCCCcEEEEecChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHH
Q 007018 236 SPDLKLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIH 308 (621)
Q Consensus 236 ~~~~~~~~~~~~~-~~k~~~L~~~l~~~~---~~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~ 308 (621)
...+.+.+..... ..+...++..+...+ ..+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 3344555554443 223333333333222 35779999999999999999999987 8999999999999999999
Q ss_pred HHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCC
Q 007018 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (621)
Q Consensus 309 l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~ 388 (621)
++.|++|+.+|||||+++++|||+|++++||+|++|.++..|+||+||+||+|+.|.|++|+++.|..++..++...+.+
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~ 413 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIV 413 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCC
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred Cc
Q 007018 389 IR 390 (621)
Q Consensus 389 ~~ 390 (621)
+.
T Consensus 414 ~~ 415 (579)
T 3sqw_A 414 IA 415 (579)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.6e-55 Score=465.78 Aligned_cols=363 Identities=30% Similarity=0.559 Sum_probs=320.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
..+|+++||++.++++|.++||..|+|+|.++++.++.+ +++++.||||||||++|++|+++.+... ..+.++||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICL 81 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEE
Confidence 478999999999999999999999999999999999998 9999999999999999999999887643 246689999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||++|+.|+++.+++++...++.+..++++...... ..+++|+|+||+++.+++.. ..+.+.++++|||||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 9999999999999999999889998888887643321 34789999999999998876 457789999999999999
Q ss_pred ccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHH
Q 007018 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (621)
Q Consensus 180 l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (621)
+.+ .++...+..+...++..+|++++|||+++.+..++...+.++..+.+.........+...+..+.. ..+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 987 789999999999999999999999999999999999999998888777766666777777777654 445555555
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 237 ~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 LYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 55443 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHhcccCCCCCccEEEEEecc-ccHHHHHHHHHHhC-CCCcCCC
Q 007018 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLS-KPIRAAP 393 (621)
Q Consensus 338 VI~~d~P~------s~~~~~qrvGR~gR~G~~G~~i~~v~~-~e~~~l~~l~~~l~-~~~~~~p 393 (621)
||+||+|. ++..|+||+||+||.|+.|.+++|+.+ ++..++..++.+++ ..+...|
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999998 999999999999999999999999997 45667778887777 4444444
No 11
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7e-55 Score=490.59 Aligned_cols=368 Identities=33% Similarity=0.517 Sum_probs=312.4
Q ss_pred CCccCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC--CCCe
Q 007018 23 GGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGV 94 (621)
Q Consensus 23 ~~f~~l~----L~~~l~~~l~~~g~~~ptpiQ~~aip~il--~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~--~~g~ 94 (621)
.+|+++. |+++++++|..+||..|||+|.++|+.++ .++|++++||||||||++|++|+++.+..... ..+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3566664 99999999999999999999999999999 67899999999999999999999999876432 2356
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhcc----CCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCc
Q 007018 95 RALILSPTRDLALQTLKFTKELGRY----TDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~----~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l 169 (621)
++|||+||++|+.|+++.++.+... ..+.+..++||.....+...+ ..+++|+|+||++|++++.......++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999887432 356788999999988877766 45899999999999999876434568889
Q ss_pred ceEEEeccccccCCChHHHHHHHHHhccc-------CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCC----CCCCC
Q 007018 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KISPD 238 (621)
Q Consensus 170 ~~vViDEah~l~~~gf~~~l~~il~~l~~-------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~----~~~~~ 238 (621)
++|||||||++.+++|...+..++..++. .+|+++||||+|+.+..++..++.+|..+.+.... .....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 99999999999999999999998877643 67899999999999999999999988777664332 22234
Q ss_pred ceEEEEEcch-hhHHHHHHHHHHHhc---cCCCcEEEEecChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHHHHH
Q 007018 239 LKLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSR 311 (621)
Q Consensus 239 ~~~~~~~~~~-~~k~~~L~~~l~~~~---~~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~l~~ 311 (621)
+.+.+..... ..+...++..+...+ ..+.++||||+|+..++.++..|... ++.+..+||+|++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 4555554443 233333333333222 35779999999999999999999987 8999999999999999999999
Q ss_pred HhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCc
Q 007018 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (621)
Q Consensus 312 F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~ 390 (621)
|++|+.+|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.|..++..++...+.++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887776554
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.4e-57 Score=499.61 Aligned_cols=364 Identities=31% Similarity=0.533 Sum_probs=181.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
.+|++++|++.++++|.++||..|||+|.+++|.++.+ +++++.|+||||||++|++|+++.+... ..++++|||+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil~ 169 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCLS 169 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEEEC
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEEEe
Confidence 48999999999999999999999999999999999987 9999999999999999999999887653 2355899999
Q ss_pred chHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
||++|+.|+++.+++++.+. ++.+...+++...... ...+++|+|+||+++++++.....+++.++++|||||||+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999998764 6788888887665432 1346799999999999999776677889999999999999
Q ss_pred ccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHH
Q 007018 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (621)
Q Consensus 180 l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~ 257 (621)
+.+ .+|...+..++..++..+|+++||||++..+..++...+.+|..+.+.........+.+.+..+.. ..+...|..
T Consensus 247 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (479)
T 3fmp_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 326 (479)
T ss_dssp HHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------------
T ss_pred HhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHH
Confidence 987 789999999999999999999999999999999999999999998887776666667776666654 456666666
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~ 337 (621)
++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 327 ~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 327 LYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 66554 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC------ChhHHHHHhcccCCCCCccEEEEEecccc-HHHHHHHHHHhCCCCcCCC
Q 007018 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 338 VI~~d~P~------s~~~~~qrvGR~gR~G~~G~~i~~v~~~e-~~~l~~l~~~l~~~~~~~p 393 (621)
||+||+|. +...|+||+||+||.|+.|.+++|+++.+ ..++..++.+++..+...+
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 99999994 56899999999999999999999999764 7788888777776655443
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2e-56 Score=478.99 Aligned_cols=368 Identities=32% Similarity=0.550 Sum_probs=189.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
+...+|++++|++.++++|...||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil 95 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 95 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999887643 246689999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||++|+.|+++.+.++....++.+..++||.....+...+. +++|+|+||+++.+.+.. ..+.+.++++||+||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 96 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHH
Confidence 999999999999999999888999999999998877665554 689999999999998876 457788999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh-HHHHHHHH
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYM 258 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~-k~~~L~~~ 258 (621)
+.+.+|...+..++..++..+|++++|||+++.+.++...++.+|..+.........+.+...+..+.... +...+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (394)
T 1fuu_A 174 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDL 253 (394)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------------
T ss_pred hhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666555555666665555443 55666666
Q ss_pred HHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE
Q 007018 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 259 l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V 338 (621)
+... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 254 ~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~V 331 (394)
T 1fuu_A 254 YDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 331 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEE
Confidence 6543 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCC
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p 393 (621)
|++++|.++..|+||+||+||.|+.|.+++|++++|...+..++.+++.++...|
T Consensus 332 i~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 332 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp -------------------------------------------------------
T ss_pred EEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 9999999999999999999999999999999999999999988888877665544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-52 Score=434.94 Aligned_cols=335 Identities=35% Similarity=0.606 Sum_probs=293.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~ 109 (621)
|++.+.++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999998864 56799999999999999
Q ss_pred HHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHH
Q 007018 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (621)
Q Consensus 110 ~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l 189 (621)
++.+++++...++.+..++||.....+...+. +++|+|+||+++.+++.. ..+.+.++++||+||||++.+++|...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999999888999999999998887776664 499999999999998876 4567889999999999999999999999
Q ss_pred HHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcE
Q 007018 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (621)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~ 269 (621)
..++..++...+++++|||+|+.+......++.++..+... .....+...+..+....+. .+..+.. ..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~ 223 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRS--KVQALRE--NKDKGV 223 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHH--HHHHHHT--CCCSSE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHH--HHHHHHh--CCCCcE
Confidence 99999999999999999999999999999888887665332 2233455666666554332 2344443 357889
Q ss_pred EEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhH
Q 007018 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (621)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~ 349 (621)
||||+++.+++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 999999999999988886 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhC
Q 007018 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (621)
Q Consensus 350 ~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~ 386 (621)
|+||+||+||.|+.|.+++|+. .|..++.+++..++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 88888877765543
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-51 Score=455.35 Aligned_cols=363 Identities=26% Similarity=0.483 Sum_probs=268.3
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.|...++++.+++.+.+.||..|+|+|.++++.++.| +++++.|+||||||++|++|+++.+... ..+.++|||+|
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P 197 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAP 197 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEEC
Confidence 4566789999999999999999999999999999998 9999999999999999999999988653 23568999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
+++|+.|+++.+++++...++.+....++..... ...+++|+|+||+++++++.. ..+.+.++++|||||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 9999999999999998887777777766654332 234789999999999998876 46778999999999999998
Q ss_pred C-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHHHH
Q 007018 182 G-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMI 259 (621)
Q Consensus 182 ~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~l 259 (621)
+ .++...+..++..++...|++++|||+++.+..+...++.++..+.+.........+...+..+.. ..+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 789999999999999999999999999999999999999999888777666666667767766643 44566666666
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 544 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC------CChhHHHHHhcccCCCCCccEEEEEecc-ccHHHHHHHHHHhCCCCcCCCCH
Q 007018 340 NWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAPSE 395 (621)
Q Consensus 340 ~~d~P------~s~~~~~qrvGR~gR~G~~G~~i~~v~~-~e~~~l~~l~~~l~~~~~~~p~~ 395 (621)
++|+| .++..|+||+||+||.|+.|.+++|+.+ .+...+..++.+++..+...|..
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99999 8899999999999999999999999985 56777888888888877766543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-49 Score=446.83 Aligned_cols=342 Identities=18% Similarity=0.249 Sum_probs=281.1
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 24 GFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.+.++++++.+.+.|.+ .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +.++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 34568999999999998 69999999999999999999999999999999999999998742 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H---hCCCCEEEECchHHH------HhHhhcCCCCcCCcc
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L---AQNPDIIIATPGRLM------HHLSEVEDMSLKSVE 170 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l---~~~~~IiV~Tpgrl~------~~l~~~~~~~l~~l~ 170 (621)
++|+.|+.+.+..+ ++.+..+.|+....++... + ..+++|+|+||++|. +.+.. ...+.++.
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999999887 5888889998877655332 2 457899999999874 33332 24567899
Q ss_pred eEEEeccccccCCC--hHHHHHH--HHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEc
Q 007018 171 YVVFDEADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (621)
Q Consensus 171 ~vViDEah~l~~~g--f~~~l~~--il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~ 246 (621)
+|||||||.+.++| |...+.. ++....+..++++||||+++.+...+...+..+..+.+... ...+++...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeC
Confidence 99999999999988 6555443 34444457899999999999988877777765544433322 2234444333332
Q ss_pred c--hhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 247 R--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 247 ~--~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
. ...+...|..++.... .+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~l~~~~-~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGRY-KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CSSHHHHHHHHHHHHTTTT-TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCcHHHHHHHHHHHHHHhc-cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 2 1334455666664332 578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 325 vaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
++++|||+|++++||+|++|.++..|+||+||+||.|++|.|++|+++.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888766543
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.8e-50 Score=434.86 Aligned_cols=325 Identities=20% Similarity=0.262 Sum_probs=268.3
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 34 l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
+.+.+.+ .|| .|||+|.+++|.++.|+|+++.||||||||++|++|++..+. .+.++|||+||++|+.|+++.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHH
Confidence 3444444 477 699999999999999999999999999999999999887763 467899999999999999999
Q ss_pred HHHhhccCCCeEEEEEcCCCh---HHHHHHHhCC-CCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-------
Q 007018 113 TKELGRYTDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF------- 181 (621)
Q Consensus 113 ~~~l~~~~~l~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~------- 181 (621)
++.++. .++++..++||.+. ..+...+..+ ++|+|+||+++.+++.. +.+.++++|||||||++.
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhh
Confidence 999988 88999999999988 5556666554 99999999999988864 667899999999998654
Q ss_pred ---C-CChHHH-HHHHHHhcc-----------cCCcEEEEEcc-CcHHHH-HHHHhcCCCCceeeeccCCCCCCCceEEE
Q 007018 182 ---G-MGFAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (621)
Q Consensus 182 ---~-~gf~~~-l~~il~~l~-----------~~~q~ll~SAT-l~~~l~-~~~~~~l~~p~~i~~~~~~~~~~~~~~~~ 243 (621)
+ +||... +..++..++ ..+|++++||| +|..+. .+....+. +.+.........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 3 788888 888888887 88999999999 565443 22222221 22223333445566666
Q ss_pred EEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCce-eecCCCCHHHHHHHHHHHhcCCceEEEe
Q 007018 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV 322 (621)
Q Consensus 244 ~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (621)
..+ .+...|..++... +.++||||+++.+++.++..|...|+.+. .+||. .|. ++.|++|+++||||
T Consensus 236 ~~~---~~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 236 ISS---RSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp ESS---CCHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred ecc---CHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 554 4566677777763 58999999999999999999999999998 89984 344 99999999999999
Q ss_pred ----cCcccccCCCCC-CCEEEEcCCC--CChhHHHHHhcccCCCC----CccEEEEEeccccHHHHHHHHHHhC
Q 007018 323 ----TDVAARGIDIPL-LDNVINWDFP--PKPKIFVHRVGRAARAG----RTGTAFSFVTSEDMAYLLDLHLFLS 386 (621)
Q Consensus 323 ----TdvaarGlDip~-v~~VI~~d~P--~s~~~~~qrvGR~gR~G----~~G~~i~~v~~~e~~~l~~l~~~l~ 386 (621)
|+++++|+|+|+ +++||+||+| .++..|+||+||+||.| +.|.+++|+ +|...+..++..++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999988 589999999 67777777777666
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.7e-49 Score=435.97 Aligned_cols=339 Identities=20% Similarity=0.322 Sum_probs=281.0
Q ss_pred CCccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 23 GGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..|++++|++.+.+.|.+ .||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 369999999999999998 89999999999999999999999999999999999999998743 246999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH----HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~----l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
+++|+.|+.+.++.+ ++.+..+.|+.....+... ..+.++|+|+||+++...... ..+...++.+||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEA 148 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999988876 4788888888776554322 246799999999999632211 1244578999999999
Q ss_pred ccccCCC--hHHHH---HHHHHhcccCCcEEEEEccCcHHHHHHHH--hcCCCCceeeeccCCCCCCCceEEEEEcchhh
Q 007018 178 DCLFGMG--FAEQL---HKILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (621)
Q Consensus 178 h~l~~~g--f~~~l---~~il~~l~~~~q~ll~SATl~~~l~~~~~--~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (621)
|.+.++| |...+ ..+...+| ..+++++|||+++.+...+. .++.+|..+... ...+++ .+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l--~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNI--RYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTE--EEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCce--EEEEEeCCC
Confidence 9999887 54443 34445554 68899999999987665333 344556544322 122333 344445566
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccC
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGl 330 (621)
+...++.++... .+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 778888888765 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHH
Q 007018 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 331 Dip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~ 382 (621)
|+|++++||+|++|.++..|+||+||+||.|++|.+++|+++.|...+..+.
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887765543
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=1.8e-48 Score=440.65 Aligned_cols=323 Identities=20% Similarity=0.253 Sum_probs=261.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc
Q 007018 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~ 119 (621)
.+|| .|||+|..++|.++.|+ ++.++||||||++|++|++.... .|..++||+|||+||.|+++++..+.++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 89999999999999999 99999999999999999985433 2667999999999999999999999999
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhc-----CCCCcCCcceEEEecccccc-CCC--------
Q 007018 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GMG-------- 184 (621)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~~g-------- 184 (621)
.++++.+++||.+...+.. ..+++|+|||||+| ++++... ..+.++.+.++|+||||+++ +++
T Consensus 151 lgl~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 9999999999987665433 34699999999999 6665542 23668899999999999988 664
Q ss_pred -------hHHHHHHHHHhcc---------cCCcEE-----------------EEEccCcHHHHHH---H--HhcCC-CCc
Q 007018 185 -------FAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSALAEF---A--KAGLR-DPH 225 (621)
Q Consensus 185 -------f~~~l~~il~~l~---------~~~q~l-----------------l~SATl~~~l~~~---~--~~~l~-~p~ 225 (621)
|...+..|+..++ +.+|++ |||||.|..+..+ . ...+. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 7789999999997 478888 9999987533332 2 22222 221
Q ss_pred eee-------ec-----------------------------cCCC-----------------------------------
Q 007018 226 LVR-------LD-----------------------------VDTK----------------------------------- 234 (621)
Q Consensus 226 ~i~-------~~-----------------------------~~~~----------------------------------- 234 (621)
.+. ++ .+..
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 110 11 0000
Q ss_pred ------C---CCCce---EEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCH
Q 007018 235 ------I---SPDLK---LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (621)
Q Consensus 235 ------~---~~~~~---~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~ 302 (621)
+ .+... ..++.+...+|..+|+..+......+.++||||+|++.++.++..|...|+++.++||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 0 00000 11344566789999999887655567899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCceEEEecCcccccCCCC--------CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILV~TdvaarGlDip--------~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
.+|..+...|+.| .|+||||+|+||+||+ ++.+||||++|.+...|+||+|||||+|++|.+++|++++|
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887776666655 6999999999999999 78899999999999999999999999999999999999876
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.1e-46 Score=417.22 Aligned_cols=334 Identities=19% Similarity=0.249 Sum_probs=209.2
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
++...|||+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++++....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34567999999999999999999999999999999999999999876544447789999999999999999999998888
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCChHHHHH-HHHHh-c-
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ-L- 196 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf~~~l~-~il~~-l- 196 (621)
++.+..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++.+.+....+. .++.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSS-SCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhC-cccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 99999999998777766667678999999999999998763 45 78999999999999999887544432 22222 1
Q ss_pred --ccCCcEEEEEccCcH-----------HHHHHHHhc------------------CCCCceeeeccCCCCCCCce-----
Q 007018 197 --SENRQTLLFSATLPS-----------ALAEFAKAG------------------LRDPHLVRLDVDTKISPDLK----- 240 (621)
Q Consensus 197 --~~~~q~ll~SATl~~-----------~l~~~~~~~------------------l~~p~~i~~~~~~~~~~~~~----- 240 (621)
++..+++++|||++. .+..+.... ...|............+...
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 356899999999842 122221111 11111111100000000000
Q ss_pred --------------E-EEEE--------------c---------------------------------------------
Q 007018 241 --------------L-AFFT--------------L--------------------------------------------- 246 (621)
Q Consensus 241 --------------~-~~~~--------------~--------------------------------------------- 246 (621)
. .+.. +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 0000 0
Q ss_pred -----------------------------------------------chhhHHHHHHHHHHHhc--cCCCcEEEEecChh
Q 007018 247 -----------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKH 277 (621)
Q Consensus 247 -----------------------------------------------~~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~ 277 (621)
....|...|..++.+.. ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 01235556666666554 56789999999999
Q ss_pred hHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEecCcccccCCCCCCCEEEEcCCC
Q 007018 278 HVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (621)
Q Consensus 278 ~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~~VI~~d~P 344 (621)
+++.++..|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555667788999999999999999 999999999999999999999999999999
Q ss_pred CChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 345 ~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
+++..|+||+|| ||. +.|.++.|+++.+...
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 999999999999 998 8899999999876643
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.6e-46 Score=448.06 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=266.8
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc
Q 007018 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~ 119 (621)
..|| .|||+|.++||.++.|+|+++.||||||||++|++|++..+. .+.++|||+||++|+.|+++.++.++ .
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----~~~~~Lil~PtreLa~Q~~~~l~~l~-~ 146 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLERLQKLA-D 146 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHHHHTTS-C
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----cCCeEEEEechHHHHHHHHHHHHHhh-C
Confidence 3688 599999999999999999999999999999999999887763 47789999999999999999999988 7
Q ss_pred CCCeEEEEEcCCCh---HHHHHHHhCC-CCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc----------C-CC
Q 007018 120 TDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF----------G-MG 184 (621)
Q Consensus 120 ~~l~~~~~~gg~~~---~~~~~~l~~~-~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~----------~-~g 184 (621)
.++++..++||.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++|||||||.+. + +|
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 78999999999988 6667777665 99999999999988864 667899999999997554 4 88
Q ss_pred hHHH-HHHHHHhcc-----------cCCcEEEEEcc-CcHHHHH-HHHhcCCCCceeeeccCCCCCCCceEEEEEcchhh
Q 007018 185 FAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (621)
Q Consensus 185 f~~~-l~~il~~l~-----------~~~q~ll~SAT-l~~~l~~-~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 250 (621)
|..+ +..++..++ ..+|+++|||| .|..+.. +....+. +.+........++.+.+..+ .
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8888 899999888 88999999999 5655442 2222222 33344444555666666655 4
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCce-eecCCCCHHHHHHHHHHHhcCCceEEEe----cCc
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV----TDV 325 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~-~l~g~l~~~~R~~~l~~F~~g~~~ILV~----Tdv 325 (621)
+...|..++... ++++||||+++..++.++..|...|+.+. .+||. |.. ++.|++|+.+|||| |++
T Consensus 297 k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 297 SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 666777777763 58999999999999999999999999998 99992 455 99999999999999 999
Q ss_pred ccccCCCCC-CCEEEEcCCCC-----------------------------------------------------------
Q 007018 326 AARGIDIPL-LDNVINWDFPP----------------------------------------------------------- 345 (621)
Q Consensus 326 aarGlDip~-v~~VI~~d~P~----------------------------------------------------------- 345 (621)
++||||+|+ |++|||||+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~ 447 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRG 447 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCS
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccce
Confidence 999999999 99999999998
Q ss_pred -------------ChhHHHHHhcccCCCCCcc--EEEEEeccccHHHHHHHHHHhC
Q 007018 346 -------------KPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLS 386 (621)
Q Consensus 346 -------------s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~~~l~~l~~~l~ 386 (621)
++.+|+||+|||||.|..| .+++++..+|...+..++..++
T Consensus 448 l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 448 VVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 7889999999999965433 3455555577777777776664
No 22
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=5.5e-47 Score=427.40 Aligned_cols=356 Identities=20% Similarity=0.265 Sum_probs=251.1
Q ss_pred hhHHhhHHHHhhccC--CCCCccCCCCCHHHHHHHHH-----CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 6 SKAELKRREKQKKKS--KSGGFESLNLSPNVFRAIKR-----KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 6 ~~~~~~~~~~~~~~~--~~~~f~~l~L~~~l~~~l~~-----~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
|.+++..+....|.+ ++.+++++ -++.+..+.+ .|. .|||+|..++|.++.|+ ++.++||||||++|+
T Consensus 31 sd~eL~~kt~~fk~rl~~g~~ld~~--lpeafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~ 105 (853)
T 2fsf_A 31 SDEELKGKTAEFRARLEKGEVLENL--IPEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTAT 105 (853)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHH--HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHH
Confidence 455555555554432 34445553 3344444333 465 79999999999999998 999999999999999
Q ss_pred HHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHh
Q 007018 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHH 157 (621)
Q Consensus 79 lp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~ 157 (621)
+|++.... .|.+++||+|||+||.|+++++..++++.++++.+++||.+.... .+..+++|+|||||+| +++
T Consensus 106 LP~l~~~l-----~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDy 178 (853)
T 2fsf_A 106 LPAYLNAL-----TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDY 178 (853)
T ss_dssp HHHHHHHT-----TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHH
T ss_pred HHHHHHHH-----cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHH
Confidence 99986543 266799999999999999999999999999999999999876533 3444799999999999 788
Q ss_pred HhhcC-----CCCcCCcceEEEecccccc-CC---------------ChHHHHHHHHHhccc------------------
Q 007018 158 LSEVE-----DMSLKSVEYVVFDEADCLF-GM---------------GFAEQLHKILGQLSE------------------ 198 (621)
Q Consensus 158 l~~~~-----~~~l~~l~~vViDEah~l~-~~---------------gf~~~l~~il~~l~~------------------ 198 (621)
+...- .+.++++.++|+||||+++ ++ +|...+..|+..++.
T Consensus 179 Lrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vd 258 (853)
T 2fsf_A 179 LRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVD 258 (853)
T ss_dssp HHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------------------------------------
T ss_pred HHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceec
Confidence 76521 2567999999999999998 54 467888899988874
Q ss_pred --CCcEE------------------------EEEccCcHHHHHHH-----HhcCC--------CCce-------------
Q 007018 199 --NRQTL------------------------LFSATLPSALAEFA-----KAGLR--------DPHL------------- 226 (621)
Q Consensus 199 --~~q~l------------------------l~SATl~~~l~~~~-----~~~l~--------~p~~------------- 226 (621)
.+|++ |||||.|.....+. ...+. ++.+
T Consensus 259 ek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~g 338 (853)
T 2fsf_A 259 EKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQG 338 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCC
Confidence 56664 89999765322211 11110 1111
Q ss_pred ----------------eeeccCCCCCCCce-----------------------------------------------EEE
Q 007018 227 ----------------VRLDVDTKISPDLK-----------------------------------------------LAF 243 (621)
Q Consensus 227 ----------------i~~~~~~~~~~~~~-----------------------------------------------~~~ 243 (621)
+.+..+......+. ..+
T Consensus 339 rr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~ 418 (853)
T 2fsf_A 339 RRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDL 418 (853)
T ss_dssp ------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCE
T ss_pred CccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcE
Confidence 11111110000000 113
Q ss_pred EEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 007018 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (621)
Q Consensus 244 ~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T 323 (621)
+.+...+|..+|...+......+.++||||+|+..++.++..|...|+++.++||++.+.++..+.+.|+.| .|+|||
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIAT 496 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIAT 496 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEE
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEec
Confidence 445667899999999877666788999999999999999999999999999999999888888888889888 599999
Q ss_pred CcccccCCCCCC-------------------------------------CEEEEcCCCCChhHHHHHhcccCCCCCccEE
Q 007018 324 DVAARGIDIPLL-------------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366 (621)
Q Consensus 324 dvaarGlDip~v-------------------------------------~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~ 366 (621)
|+|+||+||+.. .+||+|+.|.+...|+||+||+||+|.+|.+
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999974 5999999999999999999999999999999
Q ss_pred EEEeccccH
Q 007018 367 FSFVTSEDM 375 (621)
Q Consensus 367 i~~v~~~e~ 375 (621)
++|++.+|.
T Consensus 577 ~~fls~eD~ 585 (853)
T 2fsf_A 577 RFYLSMEDA 585 (853)
T ss_dssp EEEEETTSG
T ss_pred EEEecccHH
Confidence 999998763
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.3e-45 Score=412.48 Aligned_cols=333 Identities=20% Similarity=0.231 Sum_probs=236.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeE
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (621)
.|||+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 59999999999999999999999999999999999999998875444477899999999999999999999988889999
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCChHH-HHHHHHHhc-----c
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE-QLHKILGQL-----S 197 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf~~-~l~~il~~l-----~ 197 (621)
..++|+.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++.+.+... .+...+... .
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG-AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS-SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC-cccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 9999999777666666678999999999999998763 34 78899999999999999876333 333333332 2
Q ss_pred cCCcEEEEEccCcHH-----------HHHHHHhcCCCCceeeeccC----CCCCCCceEEEEEcc---------------
Q 007018 198 ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLR--------------- 247 (621)
Q Consensus 198 ~~~q~ll~SATl~~~-----------l~~~~~~~l~~p~~i~~~~~----~~~~~~~~~~~~~~~--------------- 247 (621)
..+|++++|||++.. +..+.. .+..+.+...... ..........+..+.
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 457999999998531 112211 1111111110000 000000011111000
Q ss_pred --------------------------------------------------------------------------------
Q 007018 248 -------------------------------------------------------------------------------- 247 (621)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (621)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred -----------------------------------------------hhhHHHHHHHHHHHhc--cCCCcEEEEecChhh
Q 007018 248 -----------------------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHH 278 (621)
Q Consensus 248 -----------------------------------------------~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~~ 278 (621)
...|...|..++.... ..+.++||||+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 1235556666666543 245899999999999
Q ss_pred HHHHHHHHHHCC------------CCceeecCCCCHHHHHHHHHHHhc-CCceEEEecCcccccCCCCCCCEEEEcCCCC
Q 007018 279 VEFLNVLFREEG------------LEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345 (621)
Q Consensus 279 ve~l~~~L~~~g------------~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~~VI~~d~P~ 345 (621)
++.++..|...+ .....+||+|++.+|..+++.|++ |+++|||||+++++|||+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999999864 334455669999999999999999 9999999999999999999999999999999
Q ss_pred ChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHH
Q 007018 346 KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (621)
Q Consensus 346 s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l 381 (621)
++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 89999999999877655433
No 24
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.5e-45 Score=413.02 Aligned_cols=357 Identities=20% Similarity=0.267 Sum_probs=277.2
Q ss_pred hhHHhhHHHHhhccC--C---CCCccCCCCCHHH---HHHHH-HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHH
Q 007018 6 SKAELKRREKQKKKS--K---SGGFESLNLSPNV---FRAIK-RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 6 ~~~~~~~~~~~~~~~--~---~~~f~~l~L~~~l---~~~l~-~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~a 76 (621)
|.+++..+....|.+ + +.+++++ |++.+ ..+.. ..|+ .|||+|..++|.++.|+ ++.++||+|||++
T Consensus 65 sd~eL~~kt~efk~rl~~~~~ge~ld~~-lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa 140 (922)
T 1nkt_A 65 TDAELRAKTDEFKRRLADQKNPETLDDL-LPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLT 140 (922)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCCCHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCHHHH-HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHH
Confidence 455665555554433 2 3345544 33321 11222 3698 79999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-H
Q 007018 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-M 155 (621)
Q Consensus 77 fllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~ 155 (621)
|.+|++..... |.+++||+||++||.|.++++..+.+++++++.+++||.+..... ...+++|+||||++| +
T Consensus 141 ~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgf 213 (922)
T 1nkt_A 141 CVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGF 213 (922)
T ss_dssp THHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHH
T ss_pred HHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhH
Confidence 99999754432 567999999999999999999999999999999999998765433 334699999999999 7
Q ss_pred HhHhhc-----CCCCcCCcceEEEecccccc-C---------------CChHHHHHHHHHhcc---------cCCcEE--
Q 007018 156 HHLSEV-----EDMSLKSVEYVVFDEADCLF-G---------------MGFAEQLHKILGQLS---------ENRQTL-- 203 (621)
Q Consensus 156 ~~l~~~-----~~~~l~~l~~vViDEah~l~-~---------------~gf~~~l~~il~~l~---------~~~q~l-- 203 (621)
+++... ..+.++.+.++||||||+++ + ++|...+..|+..++ +.+|++
T Consensus 214 DyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lt 293 (922)
T 1nkt_A 214 DYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVH 293 (922)
T ss_dssp HHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEEC
T ss_pred HHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEec
Confidence 777652 23667899999999999998 4 368899999999998 688998
Q ss_pred ---------------EEEccCcHHHH---HHHHh--cCC--------CCceeeeccCC-------CCC------------
Q 007018 204 ---------------LFSATLPSALA---EFAKA--GLR--------DPHLVRLDVDT-------KIS------------ 236 (621)
Q Consensus 204 ---------------l~SATl~~~l~---~~~~~--~l~--------~p~~i~~~~~~-------~~~------------ 236 (621)
|||||.+..+. ...++ .+. ++.++.++.-. .++
T Consensus 294 e~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~ 373 (922)
T 1nkt_A 294 EKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEH 373 (922)
T ss_dssp HHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTT
T ss_pred HhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhcccc
Confidence 99999875333 22221 221 11222222100 000
Q ss_pred ------------------------------------------------------CCce---EEEEEcchhhHHHHHHHHH
Q 007018 237 ------------------------------------------------------PDLK---LAFFTLRQEEKHAALLYMI 259 (621)
Q Consensus 237 ------------------------------------------------------~~~~---~~~~~~~~~~k~~~L~~~l 259 (621)
+... ..++.+...+|..++...+
T Consensus 374 V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i 453 (922)
T 1nkt_A 374 VEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDV 453 (922)
T ss_dssp CCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHH
T ss_pred ccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHH
Confidence 0000 0124455677899999988
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCC----
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---- 335 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v---- 335 (621)
......+.++||||+|++.++.++..|...|+++.++||++.+.++..+.+.|+.| .|+||||+|+||+||+.+
T Consensus 454 ~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~ 531 (922)
T 1nkt_A 454 AERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVD 531 (922)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHH
T ss_pred HHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHH
Confidence 77666778999999999999999999999999999999999888888888888877 599999999999999975
Q ss_pred ------------------------------------------------CEEEEcCCCCChhHHHHHhcccCCCCCccEEE
Q 007018 336 ------------------------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367 (621)
Q Consensus 336 ------------------------------------------------~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i 367 (621)
.+||+|+.|.+...|+||+||+||+|.+|.++
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~ 611 (922)
T 1nkt_A 532 FLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESR 611 (922)
T ss_dssp HHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEE
T ss_pred HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEE
Confidence 49999999999999999999999999999999
Q ss_pred EEeccccH
Q 007018 368 SFVTSEDM 375 (621)
Q Consensus 368 ~~v~~~e~ 375 (621)
+|++.+|.
T Consensus 612 fflSleD~ 619 (922)
T 1nkt_A 612 FYLSLGDE 619 (922)
T ss_dssp EEEETTSH
T ss_pred EEechhHH
Confidence 99998764
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=8.8e-46 Score=426.69 Aligned_cols=343 Identities=21% Similarity=0.238 Sum_probs=229.5
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~ 114 (621)
..++..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999998876543334689999999999999999999
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCCh-HHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGF-AEQLHKI 192 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf-~~~l~~i 192 (621)
++....++.+..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++.+... ...+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~-~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG-TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTT-SSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcC-cccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99888899999999998776666666678999999999999998863 34 689999999999999986542 2222222
Q ss_pred HHh-----cccCCcEEEEEccCc--------HHHHH--------------------------------------------
Q 007018 193 LGQ-----LSENRQTLLFSATLP--------SALAE-------------------------------------------- 215 (621)
Q Consensus 193 l~~-----l~~~~q~ll~SATl~--------~~l~~-------------------------------------------- 215 (621)
+.. .+...+++++|||+. ..+..
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 246789999999986 11111
Q ss_pred --------------HHHhcCCCCceeeeccCCC-----------------------------------------------
Q 007018 216 --------------FAKAGLRDPHLVRLDVDTK----------------------------------------------- 234 (621)
Q Consensus 216 --------------~~~~~l~~p~~i~~~~~~~----------------------------------------------- 234 (621)
++...+.++..+.......
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 1122222111110000000
Q ss_pred ---------------------------CCCCceEEEEE-------------c---chhhHHHHHHHHHHHhc--cCCCcE
Q 007018 235 ---------------------------ISPDLKLAFFT-------------L---RQEEKHAALLYMIREHI--SSDQQT 269 (621)
Q Consensus 235 ---------------------------~~~~~~~~~~~-------------~---~~~~k~~~L~~~l~~~~--~~~~k~ 269 (621)
..+.+.+.+.. . ....|...|..++.... ..+.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 00000000000 0 12346677777777653 356789
Q ss_pred EEEecChhhHHHHHHHHHHCC----CCceee--------cCCCCHHHHHHHHHHHhc-CCceEEEecCcccccCCCCCCC
Q 007018 270 LIFVSTKHHVEFLNVLFREEG----LEPSVC--------YGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLD 336 (621)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g----~~~~~l--------~g~l~~~~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~ 336 (621)
||||+++..++.++..|...+ +.+..+ ||+|++.+|..++++|++ |+.+|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999988 888888 459999999999999998 9999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHH
Q 007018 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (621)
Q Consensus 337 ~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~ 380 (621)
+||+||+|.++..|+||+|| ||. +.|.++.+++..+......
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHH
Confidence 99999999999999999999 998 7899999999887755443
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-44 Score=417.71 Aligned_cols=338 Identities=22% Similarity=0.270 Sum_probs=267.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
+..+|++++|++++.+.+.+.||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+.. .+.+++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----NGGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----SCSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 457899999999999999999999999999999999 7889999999999999999999999988764 26789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+|+++|+.|+++.++.+.. .++.+..++|+...... ...+++|+|+||+++..++.. ....++++++|||||+|.
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhh
Confidence 9999999999998865543 47889999987654432 224799999999999998876 334488999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceE------------EEEEcc
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL------------AFFTLR 247 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~------------~~~~~~ 247 (621)
+.+.++...+..++..++ ..|++++|||+++. .+++... ..+ .+.. .....+ +.. ......
T Consensus 157 l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~-~~~~--~~r~~~-l~~~~~~~~~~~~~~~~~~~~ 229 (715)
T 2va8_A 157 LNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAE-PVAT--NWRPVP-LIEGVIYPERKKKEYNVIFKD 229 (715)
T ss_dssp GGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCE-EEEC--CCCSSC-EEEEEEEECSSTTEEEEEETT
T ss_pred cCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCC-ccCC--CCCCCC-ceEEEEecCCcccceeeecCc
Confidence 998889999999988887 88999999999752 4444332 221 1111 111111 111 111111
Q ss_pred hh----hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCC---------------------------------
Q 007018 248 QE----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG--------------------------------- 290 (621)
Q Consensus 248 ~~----~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g--------------------------------- 290 (621)
.. .....+...+.+.+..++++||||+++..++.++..|....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 309 (715)
T 2va8_A 230 NTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKS 309 (715)
T ss_dssp SCEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHH
T ss_pred chhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHH
Confidence 00 00123344444445578999999999999999999998642
Q ss_pred ---CCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----cC-------CCCChhHHHHHhcc
Q 007018 291 ---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-------FPPKPKIFVHRVGR 356 (621)
Q Consensus 291 ---~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~d-------~P~s~~~~~qrvGR 356 (621)
..+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||+ || .|.+...|.||+||
T Consensus 310 ~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GR 389 (715)
T 2va8_A 310 LISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGR 389 (715)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTT
T ss_pred HHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhh
Confidence 24788999999999999999999999999999999999999999999999 99 89999999999999
Q ss_pred cCCCCC--ccEEEEEecccc
Q 007018 357 AARAGR--TGTAFSFVTSED 374 (621)
Q Consensus 357 ~gR~G~--~G~~i~~v~~~e 374 (621)
+||.|. .|.|+.++++.+
T Consensus 390 aGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 390 AGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp BCCTTTCSCEEEEEECSCGG
T ss_pred cCCCCCCCCceEEEEeCCch
Confidence 999884 799999998876
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-45 Score=435.09 Aligned_cols=340 Identities=16% Similarity=0.197 Sum_probs=269.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
..|..+++++.+...+...++..|||+|.++|+.++.|++++++|+||||||++|++|+++.+.. +.++||++||
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~Pt 236 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPI 236 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEESS
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcCc
Confidence 46788888888888877777778999999999999999999999999999999999999998853 6789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~ 182 (621)
++|+.|+++.+.++.. .+..++|+.+ +..+++|+|+||++|.+++.. ....+.++++|||||||++.+
T Consensus 237 raLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccc
Confidence 9999999998888653 5777888776 345799999999999999987 345588999999999999999
Q ss_pred CChHHHHHHHHHhcccCCcEEEEEccCcHH--HHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch---------hh-
Q 007018 183 MGFAEQLHKILGQLSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EE- 250 (621)
Q Consensus 183 ~gf~~~l~~il~~l~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~---------~~- 250 (621)
++|...+..++..++...|+++||||+|+. +..+.......|..+....... ..+...++.... ..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccc
Confidence 999999999999999999999999999874 5577776666665444332211 112222211100 00
Q ss_pred ---------------------------------------H---HHHHHHHHHHhcc-CCCcEEEEecChhhHHHHHHHHH
Q 007018 251 ---------------------------------------K---HAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFR 287 (621)
Q Consensus 251 ---------------------------------------k---~~~L~~~l~~~~~-~~~k~IVF~~t~~~ve~l~~~L~ 287 (621)
+ ...+..++..... ...++||||+++..|+.++..|.
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~ 462 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMS 462 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTC
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0 2223333333222 35699999999999999998886
Q ss_pred HCCCC---------------------------------------ceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccc
Q 007018 288 EEGLE---------------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (621)
Q Consensus 288 ~~g~~---------------------------------------~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaar 328 (621)
..++. +..+||+|++..|..++..|++|.++|||||+++++
T Consensus 463 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~ 542 (1108)
T 3l9o_A 463 KLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSI 542 (1108)
T ss_dssp SHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCS
T ss_pred hccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhc
Confidence 53322 688999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEEcCCC--------CChhHHHHHhcccCCCC--CccEEEEEeccc-cHHHHHHH
Q 007018 329 GIDIPLLDNVINWDFP--------PKPKIFVHRVGRAARAG--RTGTAFSFVTSE-DMAYLLDL 381 (621)
Q Consensus 329 GlDip~v~~VI~~d~P--------~s~~~~~qrvGR~gR~G--~~G~~i~~v~~~-e~~~l~~l 381 (621)
|||+|++++||+++.| .++..|+||+||+||.| ..|.|++++.+. +...+..+
T Consensus 543 GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 543 GLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp CCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred CCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 9999999999987764 46777999999999999 579999998876 33444443
No 28
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.9e-45 Score=438.76 Aligned_cols=336 Identities=18% Similarity=0.232 Sum_probs=271.2
Q ss_pred CccCCCCCHHHH-----HHHHH-CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEE
Q 007018 24 GFESLNLSPNVF-----RAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (621)
Q Consensus 24 ~f~~l~L~~~l~-----~~l~~-~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~L 97 (621)
.+...++++.+. +.+.+ +||. | |+|.++||.++.|+|+++.||||||||+ |.+|++..+.. .+.++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~l 103 (1054)
T 1gku_B 31 AASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCY 103 (1054)
T ss_dssp CCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEE
T ss_pred cccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEE
Confidence 455566555433 33443 7999 9 9999999999999999999999999998 99999988765 367899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCC----eEEEEEcCCChHHH---HHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDL----RISLLVGGDSMESQ---FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l----~~~~~~gg~~~~~~---~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~ 170 (621)
||+||++|+.|+++.++.++...++ .+..++||.+...+ ...+.. ++|+|+||++|++++.. +++++
T Consensus 104 il~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~ 177 (1054)
T 1gku_B 104 VIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFD 177 (1054)
T ss_dssp EEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCS
T ss_pred EEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCC
Confidence 9999999999999999999988888 89999999988764 344445 99999999999988764 66899
Q ss_pred eEEEeccccccCCChHHHHHHHHHhc-----------ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCc
Q 007018 171 YVVFDEADCLFGMGFAEQLHKILGQL-----------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239 (621)
Q Consensus 171 ~vViDEah~l~~~gf~~~l~~il~~l-----------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~ 239 (621)
+|||||||++++ +...+..++..+ +..+|+++||||+++. ..++..++.++..+.+.........+
T Consensus 178 ~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i 254 (1054)
T 1gku_B 178 FIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNV 254 (1054)
T ss_dssp EEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCE
T ss_pred EEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCc
Confidence 999999999998 456777777666 4678999999999876 54444444444444444443344455
Q ss_pred eEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 007018 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (621)
Q Consensus 240 ~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (621)
.+.+. ...+...|..++... +.++||||+|+..++.++..|... +.+..+||++. .+++.|++|+.+|
T Consensus 255 ~~~~~---~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~V 322 (1054)
T 1gku_B 255 EDVAV---NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDH 322 (1054)
T ss_dssp EEEEE---SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSE
T ss_pred eEEEe---chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcE
Confidence 55554 345666666777654 678999999999999999999988 99999999984 6789999999999
Q ss_pred EEe----cCcccccCCCCCC-CEEEEcCCC--------------------------------------------------
Q 007018 320 LIV----TDVAARGIDIPLL-DNVINWDFP-------------------------------------------------- 344 (621)
Q Consensus 320 LV~----TdvaarGlDip~v-~~VI~~d~P-------------------------------------------------- 344 (621)
||| |+++++|||+|+| ++||++|+|
T Consensus 323 LVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1054)
T 1gku_B 323 LIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKK 402 (1054)
T ss_dssp EEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHH
T ss_pred EEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999995 999999999
Q ss_pred ---------------------CChhHHHHHhcccCCCCCcc--EEEEEeccccHHHHHHHHHHhCC
Q 007018 345 ---------------------PKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLSK 387 (621)
Q Consensus 345 ---------------------~s~~~~~qrvGR~gR~G~~G--~~i~~v~~~e~~~l~~l~~~l~~ 387 (621)
.+...|+||+||+||.|..| .+++|+..+|...+..++..++.
T Consensus 403 ~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 403 VMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988876 48999999998888888877764
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-44 Score=421.96 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=216.3
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhcc
Q 007018 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~ 119 (621)
.+|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999999999988754344778999999999999999999999888
Q ss_pred CCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCChHHHH-HHHHHhc-
Q 007018 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQL-HKILGQL- 196 (621)
Q Consensus 120 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf~~~l-~~il~~l- 196 (621)
.++++..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++...+....+ ..++...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc-cccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 899999999999877777777778999999999999998763 44 7889999999999999876543333 2333221
Q ss_pred ---ccCCcEEEEEccCcH-----------HHHHHHHh------------------cCCCCceeeeccCCCCCCC------
Q 007018 197 ---SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD------ 238 (621)
Q Consensus 197 ---~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~------ 238 (621)
.+.++++++|||++. .+..+... ++..|............+.
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 456899999999852 22222211 1111211111000000000
Q ss_pred ---------------------ceEEEEE-------c--------------------------------------------
Q 007018 239 ---------------------LKLAFFT-------L-------------------------------------------- 246 (621)
Q Consensus 239 ---------------------~~~~~~~-------~-------------------------------------------- 246 (621)
+....+. +
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000000 0
Q ss_pred ------------------------------------------------chhhHHHHHHHHHHHhc--cCCCcEEEEecCh
Q 007018 247 ------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (621)
Q Consensus 247 ------------------------------------------------~~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~ 276 (621)
....|...|..+|.+.. ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 01225555666665533 4678999999999
Q ss_pred hhHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEecCcccccCCCCCCCEEEEcCC
Q 007018 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (621)
Q Consensus 277 ~~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~~VI~~d~ 343 (621)
.+++.++..|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 5556677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 344 P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
|+++..|+||+|| ||. +.|.++.|+++.+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 998 8999999999876643
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.4e-45 Score=423.32 Aligned_cols=340 Identities=21% Similarity=0.286 Sum_probs=271.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.+|++++|++++.+.+.+.||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.+++|++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P 76 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVP 76 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcC
Confidence 3699999999999999999999999999999998 88999999999999999999999999888743 678999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
+++|+.|+++.++++.. .++++..++|+...... ...+++|+|+||+++..++.. ....++++++|||||+|.+.
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccC
Confidence 99999999998876654 37899999997654432 234799999999999988876 34458899999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEE-----Ecchh--hHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-----TLRQE--EKHAA 254 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~-----~~~~~--~k~~~ 254 (621)
+.++...+..++..++...|++++|||+++. .+++.. +..+ .+.. .....+ +...+. ..... .....
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~~-l~~~-~~~~--~~rp~~-l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T 2zj8_A 152 SRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAEW-LNAE-LIVS--DWRPVK-LRRGVFYQGFVTWEDGSIDRFSS 225 (720)
T ss_dssp CTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHHH-TTEE-EEEC--CCCSSE-EEEEEEETTEEEETTSCEEECSS
T ss_pred CCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHHH-hCCc-ccCC--CCCCCc-ceEEEEeCCeeeccccchhhhhH
Confidence 9889999999999988789999999999752 444433 3221 1111 111111 111111 01000 00111
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC------------------C---------------CCceeecCCCC
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------G---------------LEPSVCYGDMD 301 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~------------------g---------------~~~~~l~g~l~ 301 (621)
+...+.+.+..++++||||+++..++.++..|... + ..+..+||+|+
T Consensus 226 ~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~ 305 (720)
T 2zj8_A 226 WEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLG 305 (720)
T ss_dssp TTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCC
Confidence 22333333346789999999999999999988753 1 24789999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----cC----CCCChhHHHHHhcccCCCC--CccEEEEEec
Q 007018 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD----FPPKPKIFVHRVGRAARAG--RTGTAFSFVT 371 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~d----~P~s~~~~~qrvGR~gR~G--~~G~~i~~v~ 371 (621)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.| ..|.|+.+++
T Consensus 306 ~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 306 RDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 999999999999999999999999999999999999998 77 5899999999999999988 4799999999
Q ss_pred cccHHH
Q 007018 372 SEDMAY 377 (621)
Q Consensus 372 ~~e~~~ 377 (621)
+.+..+
T Consensus 386 ~~~~~~ 391 (720)
T 2zj8_A 386 SDDPRE 391 (720)
T ss_dssp SSCHHH
T ss_pred CccHHH
Confidence 988543
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-44 Score=417.99 Aligned_cols=339 Identities=21% Similarity=0.273 Sum_probs=265.9
Q ss_pred CCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 23 GGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 23 ~~f~~l~--L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
.+|++|+ |++.+.+.+.+.||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+.. +.+++|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~ 75 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVV 75 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEe
Confidence 3689999 9999999999999999999999999999999999999999999999999999988763 56899999
Q ss_pred chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|+++|+.|+++.++.+.. .++++..++|+...... ...+++|+|+||+++..++.. ....++++++|||||+|.+
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l 150 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLL 150 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeec
Confidence 999999999998865543 47899999987654332 234799999999999998876 3344889999999999999
Q ss_pred cCCChHHHHHHHHHhc---ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEE------Ecchhh-
Q 007018 181 FGMGFAEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF------TLRQEE- 250 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l---~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~------~~~~~~- 250 (621)
.+.++...+..++..+ ++..|++++|||+++ ..+++.. +..+ .+..+. ...+ +...+. ......
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~-~~~~~~--r~~~-l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDAD-YYVSDW--RPVP-LVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp GCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCE-EEECCC--CSSC-EEEEEECSSEEEEEETTEE
T ss_pred CCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCC-cccCCC--CCcc-ceEEEeeCCeeeccCcchh
Confidence 9988888887777665 578999999999985 3455543 3322 221111 1111 111110 011000
Q ss_pred --HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC------------------------------CCCceeecC
Q 007018 251 --KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------GLEPSVCYG 298 (621)
Q Consensus 251 --k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~------------------------------g~~~~~l~g 298 (621)
+...+...+.+.+..++++||||+++..++.++..|... +..+..+||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~ 304 (702)
T 2p6r_A 225 TSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA 304 (702)
T ss_dssp EEEECCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT
T ss_pred hhhhhhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC
Confidence 000022333333446889999999999999999888753 235788999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----cC---CCCChhHHHHHhcccCCCC--CccEEEEE
Q 007018 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FPPKPKIFVHRVGRAARAG--RTGTAFSF 369 (621)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~d---~P~s~~~~~qrvGR~gR~G--~~G~~i~~ 369 (621)
+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ || .|.+...|.||+||+||.| ..|.|+.+
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 384 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIII 384 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999999999999999999999999999999999999998 66 7899999999999999998 47999999
Q ss_pred eccccHHH
Q 007018 370 VTSEDMAY 377 (621)
Q Consensus 370 v~~~e~~~ 377 (621)
+++.+..+
T Consensus 385 ~~~~~~~~ 392 (702)
T 2p6r_A 385 VGKRDREI 392 (702)
T ss_dssp CCGGGHHH
T ss_pred ecCccHHH
Confidence 99988543
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.3e-43 Score=381.40 Aligned_cols=324 Identities=21% Similarity=0.279 Sum_probs=256.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeE
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (621)
.|+|+|.++++.++.+ ++++.++||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+.++.......+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 5999999999999999 99999999999999999999988762 366899999999999999999998865555688
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEE
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll 204 (621)
..++|+........ ...+++|+|+||+.+...+.. ..+.+.++++|||||||++.+......+...+....+..++++
T Consensus 84 ~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 84 VALTGEKSPEERSK-AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred EEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 89999887765433 334689999999999988876 4567899999999999999876666666666666677899999
Q ss_pred EEccCcHH---HHHHHHhcCCCCceeeeccCCCC---CCCceEEEEEc--------------------------------
Q 007018 205 FSATLPSA---LAEFAKAGLRDPHLVRLDVDTKI---SPDLKLAFFTL-------------------------------- 246 (621)
Q Consensus 205 ~SATl~~~---l~~~~~~~l~~p~~i~~~~~~~~---~~~~~~~~~~~-------------------------------- 246 (621)
+|||++.. +.++.......+..+........ .......+...
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999733 33333322111111100000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 007018 247 -------------------------------------------------------------------------------- 246 (621)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (621)
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence
Q ss_pred ------------------chhhHHHHHHHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecC--------
Q 007018 247 ------------------RQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG-------- 298 (621)
Q Consensus 247 ------------------~~~~k~~~L~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g-------- 298 (621)
....|...|..++.... ..+.++||||+++..++.++..|...|+.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 12235566677776654 46889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHH
Q 007018 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (621)
Q Consensus 299 ~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~ 376 (621)
+|++.+|..+++.|++|+.+|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.|+ |.++.|+++++..
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999998664
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-43 Score=416.02 Aligned_cols=336 Identities=19% Similarity=0.229 Sum_probs=214.9
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
..-.|+..|+|+|.++++.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+++.++++.
T Consensus 241 ~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 241 PPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp -------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 33457889999999999999999999999999999999999999988876543347789999999999999999999998
Q ss_pred ccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCChHHH-HHHHHHh
Q 007018 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQ 195 (621)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf~~~-l~~il~~ 195 (621)
...++++..++||.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++...+.... +..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~ 399 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 399 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC-ccccccCCCEEEEECccccCCCccHHHHHHHHHHH
Confidence 88899999999998776666666667999999999999998763 44 788999999999999987753332 2233332
Q ss_pred c----ccCCcEEEEEccCcH-----------HHHHHHHh------------------cCCCCceeeeccCCCCCCC----
Q 007018 196 L----SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD---- 238 (621)
Q Consensus 196 l----~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~---- 238 (621)
. .+..+++++|||++. .+..+... ++..|............+.
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 1 456899999999842 22222211 1122221111111000000
Q ss_pred -----------------------ceEEEEEc-------------------------------------------------
Q 007018 239 -----------------------LKLAFFTL------------------------------------------------- 246 (621)
Q Consensus 239 -----------------------~~~~~~~~------------------------------------------------- 246 (621)
+....+..
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000000
Q ss_pred --------------------------------------------------chhhHHHHHHHHHHHhc--cCCCcEEEEec
Q 007018 247 --------------------------------------------------RQEEKHAALLYMIREHI--SSDQQTLIFVS 274 (621)
Q Consensus 247 --------------------------------------------------~~~~k~~~L~~~l~~~~--~~~~k~IVF~~ 274 (621)
....|...|..+|.+.. ..+.++||||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 01224445555666543 45789999999
Q ss_pred ChhhHHHHHHHHHHC------------CCCceeecCCCCHHHHHHHHHHHhc-CCceEEEecCcccccCCCCCCCEEEEc
Q 007018 275 TKHHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINW 341 (621)
Q Consensus 275 t~~~ve~l~~~L~~~------------g~~~~~l~g~l~~~~R~~~l~~F~~-g~~~ILV~TdvaarGlDip~v~~VI~~ 341 (621)
++..++.++..|... |.....+||+|++.+|..++++|++ |+++|||||+++++|||+|++++||+|
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 719 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEe
Confidence 999999999999986 5555667888999999999999999 999999999999999999999999999
Q ss_pred CCCCChhHHHHHhcccCCCCCccEEEEEeccccHH
Q 007018 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (621)
Q Consensus 342 d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~ 376 (621)
|+|+++..|+||+|| ||. +.|.++.|++..+..
T Consensus 720 D~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 720 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999999 998 789999999987654
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-42 Score=404.56 Aligned_cols=322 Identities=18% Similarity=0.239 Sum_probs=257.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
....+|. |+|+|.++++.++.|+++++.||||||||++|.+|++..+.. +.++||++||++|+.|+++.+.++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3446786 999999999999999999999999999999999999988753 6789999999999999999888865
Q ss_pred ccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
. .+..++|+.... .+++|+|+||++|.+++.. ....+.++++|||||||++.++++...+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 3 677788876533 4689999999999988876 356789999999999999999999999999999999
Q ss_pred cCCcEEEEEccCcHHH--HHHHHhcCCCCceeeeccCCCCCCCceEEEEEcc---------h------------------
Q 007018 198 ENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---------Q------------------ 248 (621)
Q Consensus 198 ~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~---------~------------------ 248 (621)
...|++++|||+|+.. ..+.......+..+...... . ..+...++... .
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-P-TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-S-SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-c-ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 9999999999998753 34444444445443332221 1 12332222111 0
Q ss_pred ----------------------------hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCC--------
Q 007018 249 ----------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-------- 292 (621)
Q Consensus 249 ----------------------------~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-------- 292 (621)
......++..+... ...++||||+++..++.++..|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 01112233333322 3458999999999999999998775543
Q ss_pred -------------------------------ceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE-
Q 007018 293 -------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN- 340 (621)
Q Consensus 293 -------------------------------~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~- 340 (621)
+..+||+|++..|..++..|++|.++|||||+++++|||+|.+++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 677999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCChhHHHHHhcccCCCCC--ccEEEEEeccc-cHHHHHHH
Q 007018 341 ---WDF----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE-DMAYLLDL 381 (621)
Q Consensus 341 ---~d~----P~s~~~~~qrvGR~gR~G~--~G~~i~~v~~~-e~~~l~~l 381 (621)
||. |.++..|+||+||+||.|. .|.|++++++. +...+..+
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 8999999999999999997 49999999876 55555444
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-42 Score=398.75 Aligned_cols=325 Identities=18% Similarity=0.216 Sum_probs=253.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcC------CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 32 ~~l~~~l~~~g~~~ptpiQ~~aip~il~g------~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
+.+-+.+...|| .|||+|.++++.++.+ .+++++|+||||||++|++|+++.+.. |.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 445555678999 8999999999999876 589999999999999999999998864 6789999999999
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 106 a~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~---~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|.|+++.+.++....++++..++|+.+..... ..+. +.++|+|+||+.+.+ .+.+.++++||+||+|++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhh
Confidence 99999999999888899999999998876543 3343 469999999998753 4668899999999999952
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHH
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~ 261 (621)
+.. ...+......+++++||||+++....+.. ..+.....++........+.. .+....+...+...+.+
T Consensus 504 ---~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~---~~~~~~~~~~l~~~i~~ 573 (780)
T 1gm5_A 504 ---VKQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQT---MLVPMDRVNEVYEFVRQ 573 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEE---CCCCSSTHHHHHHHHHH
T ss_pred ---HHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEE---EEeccchHHHHHHHHHH
Confidence 222 22233344578999999998665444433 333322223221111112221 12233455667788887
Q ss_pred hccCCCcEEEEecCh--------hhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccC
Q 007018 262 HISSDQQTLIFVSTK--------HHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (621)
Q Consensus 262 ~~~~~~k~IVF~~t~--------~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGl 330 (621)
.+..+.+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++|+
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 778889999999966 457788888887 478899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCCC-ChhHHHHHhcccCCCCCccEEEEEeccccHHHH
Q 007018 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378 (621)
Q Consensus 331 Dip~v~~VI~~d~P~-s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l 378 (621)
|+|++++||+++.|. +...|.||+||+||.|+.|.|++++.+.+....
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~ 702 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAM 702 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHH
Confidence 999999999999996 688899999999999999999999986444333
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.9e-42 Score=399.14 Aligned_cols=324 Identities=21% Similarity=0.248 Sum_probs=229.1
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcchHHHHHHH-HHHHHHhhccCCC
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQT-LKFTKELGRYTDL 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~PtreLa~Q~-~~~~~~l~~~~~l 122 (621)
.|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.... ...+.++|||+|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 599999999999999999999999999999999999999886532 12236799999999999999 9999888755 58
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhh-----cCCCCcCCcceEEEeccccccCCC-hHHHHHHHHHh-
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQ- 195 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~-----~~~~~l~~l~~vViDEah~l~~~g-f~~~l~~il~~- 195 (621)
.+..++|+.....+...+..+++|+|+||++|.+++.. ...+.+.++++|||||||++...+ +...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999999877666666667899999999999988842 234678899999999999986543 22222222222
Q ss_pred ---cc---------cCCcEEEEEccCcHH-----------HHHHHHhcCCCCceeeeccC----CCCCCCceEEEEEcc-
Q 007018 196 ---LS---------ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLR- 247 (621)
Q Consensus 196 ---l~---------~~~q~ll~SATl~~~-----------l~~~~~~~l~~p~~i~~~~~----~~~~~~~~~~~~~~~- 247 (621)
.. +.++++++|||++.. +..+.... ....+...... ..........+..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l-~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANL-DAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHH-TCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhc-CCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 11 567999999999852 22222111 11000000000 000000011111100
Q ss_pred --------------------------------------------------------------------------------
Q 007018 248 -------------------------------------------------------------------------------- 247 (621)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (621)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------------------------hhhHHHHHHHHHHHhcc--C-CCcEE
Q 007018 248 ------------------------------------------------------QEEKHAALLYMIREHIS--S-DQQTL 270 (621)
Q Consensus 248 ------------------------------------------------------~~~k~~~L~~~l~~~~~--~-~~k~I 270 (621)
...|...|..+|..... . +.++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 00112223334433222 2 78999
Q ss_pred EEecChhhHHHHHHHHHHC------CCCceeecCC--------CCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCC
Q 007018 271 IFVSTKHHVEFLNVLFREE------GLEPSVCYGD--------MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (621)
Q Consensus 271 VF~~t~~~ve~l~~~L~~~------g~~~~~l~g~--------l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~ 336 (621)
|||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc
Q 007018 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (621)
Q Consensus 337 ~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~ 373 (621)
+||+||+|+++..|+||+||+||. |.+++++.+.
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999996554 4556666553
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.7e-40 Score=392.77 Aligned_cols=325 Identities=18% Similarity=0.198 Sum_probs=264.3
Q ss_pred CCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhc----CC--cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 27 SLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILS----GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 27 ~l~L~~~l~~~l~-~~g~~~ptpiQ~~aip~il~----g~--dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
.++++....+.+. ..||. |||+|.++|+.++. |+ |++++|+||||||++++++++..+. .|.+++||
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----~g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----hCCeEEEE
Confidence 4567888888775 46886 79999999999987 66 9999999999999999999887654 36799999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH---HHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEe
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~---~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViD 175 (621)
+||++|+.|+++.+.+.....++.+..+.|..+...+. ..+. +.++|+|+||+.+. ..+.++++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 99999999999999887777788899888876655433 3343 46999999998663 35678999999999
Q ss_pred ccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHH
Q 007018 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (621)
Q Consensus 176 Eah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L 255 (621)
|||++ ......++..++..+++++||||+++....++..++.++..+...... ...+...+..... ..+
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~--r~~i~~~~~~~~~----~~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDS----MVV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--CBCEEEEEEECCH----HHH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--ccccEEEEecCCH----HHH
Confidence 99993 345567777888889999999999887777777777766544332211 1123333332222 223
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip 333 (621)
...+...+..+++++|||+++.+++.++..|... ++.+..+||+|++.+|..++..|++|+.+|||||+++++|+|+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 3333344456899999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CCCEEEEcCC-CCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 334 LLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 334 ~v~~VI~~d~-P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
++++||+++. +.+...|.||+||+||.|+.|.||+++.+++
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999998 5789999999999999999999999988754
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.5e-43 Score=399.93 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=242.9
Q ss_pred ccC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 25 FES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 25 f~~-l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
|.. +++++.++++|... +..|+|+|+.++|.++.|+|+++.|+||||||++|++|+++.+.. .+.++|||+|||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Ptr 225 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPTR 225 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSH
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcChH
Confidence 444 67888877777654 588999999999999999999999999999999999999998875 367899999999
Q ss_pred HHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCC
Q 007018 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (621)
Q Consensus 104 eLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~ 183 (621)
+||.|+++.++ +..+. +.++. .. .....+..+.++|.+.+.+.+.. ...+.++++|||||||++ ++
T Consensus 226 eLa~Qi~~~l~------~~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 226 VVAAEMEEALR------GLPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHTT------TSCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHhc------CCcee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-Cc
Confidence 99999987765 23333 22211 00 00123445778888888877665 356899999999999998 77
Q ss_pred ChHHHHHHHHHhcc-cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHh
Q 007018 184 GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (621)
Q Consensus 184 gf~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~ 262 (621)
+|...+..++..++ ..+|+++||||+|..+..++. .++..+.+...... .+...++..+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~~~--------------~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREIPE--------------RSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCCCS--------------SCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccCCH--------------HHHHHHHHHHHh-
Confidence 88888888888876 689999999999877544332 24444444332110 111123333433
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEE----
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV---- 338 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~V---- 338 (621)
.++++||||+|+++++.++..|...++.+..+||. +|..+++.|++|+.+||||||++++|||+| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999985 677899999999999999999999999998 8988
Q ss_pred ----------------EEcCCCCChhHHHHHhcccCCCCC-ccEEEEEec---cccHHHHHHHHHHh
Q 007018 339 ----------------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVT---SEDMAYLLDLHLFL 385 (621)
Q Consensus 339 ----------------I~~d~P~s~~~~~qrvGR~gR~G~-~G~~i~~v~---~~e~~~l~~l~~~l 385 (621)
|+|+.|.+...|+||+||+||+|. +|.+++|++ ++|...+..++..+
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999965 899999998 77777766666543
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.9e-40 Score=391.08 Aligned_cols=320 Identities=20% Similarity=0.264 Sum_probs=248.1
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.+|. |+|+|.++|+.++.|+++++.||||||||++|++|+...+. .+.++||++|+++|+.|+++.++++. .
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~--~ 107 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETF--D 107 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHHHc--C
Confidence 5675 99999999999999999999999999999999999887654 36789999999999999999887753 2
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
++.+..++|+... ...++|+|+||++|.+++.. ....+.++++|||||||++.++++...+.+++..++...
T Consensus 108 ~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 108 DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp -CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 6788899998753 34589999999999998876 345688999999999999999999999999999999999
Q ss_pred cEEEEEccCcHHH--HHHHHhcCCCCceeeeccCCCCCCCceEEEE----------------------------------
Q 007018 201 QTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFF---------------------------------- 244 (621)
Q Consensus 201 q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~---------------------------------- 244 (621)
|++++|||+|+.. .++.......+..+ +....... .+.+.+.
T Consensus 180 ~iIlLSAT~~n~~ef~~~l~~~~~~~~~v-i~~~~r~~-pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 180 KFILLSATVPNTYEFANWIGRTKQKNIYV-ISTPKRPV-PLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTCCEEE-EECSSCSS-CEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred CEEEEcCCCCChHHHHHHHhcccCCceEE-EecCCCCc-cceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 9999999997653 33332211111111 11111110 1111110
Q ss_pred -----------------------------------------------------------EcchhhHHHHHHHHHHHhccC
Q 007018 245 -----------------------------------------------------------TLRQEEKHAALLYMIREHISS 265 (621)
Q Consensus 245 -----------------------------------------------------------~~~~~~k~~~L~~~l~~~~~~ 265 (621)
......+...++..+... .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~ 335 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--E 335 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHT--T
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--C
Confidence 011223345566666554 4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCC---------------------------------------CceeecCCCCHHHHH
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREEGL---------------------------------------EPSVCYGDMDQDARK 306 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~---------------------------------------~~~~l~g~l~~~~R~ 306 (621)
..++||||+|+..|+.++..|...++ .+..+||+|++..|.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 57999999999999999999977665 468999999999999
Q ss_pred HHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCC---------ChhHHHHHhcccCCCC--CccEEEEEec--cc
Q 007018 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------KPKIFVHRVGRAARAG--RTGTAFSFVT--SE 373 (621)
Q Consensus 307 ~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~---------s~~~~~qrvGR~gR~G--~~G~~i~~v~--~~ 373 (621)
.++..|++|.++|||||+++++|||+|+ ..||+++.|. ++..|+||+|||||.| ..|.+++++. +.
T Consensus 416 ~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~ 494 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPL 494 (997)
T ss_dssp HHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCC
T ss_pred HHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcc
Confidence 9999999999999999999999999999 5666555554 9999999999999998 4688888874 23
Q ss_pred cHHHHHHH
Q 007018 374 DMAYLLDL 381 (621)
Q Consensus 374 e~~~l~~l 381 (621)
+...+..+
T Consensus 495 ~~~~~~~~ 502 (997)
T 4a4z_A 495 SIATFKEV 502 (997)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 44555444
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.3e-42 Score=373.73 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=220.7
Q ss_pred CCCCChHHHHHHHHHHhcCCcE-EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 42 GYKVPTPIQRKTMPLILSGADV-VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dv-v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
|+.+|+|+|+ +||.++.++++ ++.||||||||++|++|+++.+.. .+.++||++|||+|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7899999986 79999999887 899999999999999999987765 36789999999999999988764
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHH-hcccC
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG-QLSEN 199 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~-~l~~~ 199 (621)
++.+....+.... ....+..|.++|++.+.+++.. ...+.++++|||||||++ ++++...+..+.. ..++.
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 3333222221111 1134567999999999988876 356889999999999987 4443333333332 23557
Q ss_pred CcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhH
Q 007018 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (621)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~v 279 (621)
+|+++||||+|..+..+ ...++..+...... +.. .+ ..+...+.+ .++++||||+|+.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~---p~~--~~---------~~~~~~l~~---~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIEREI---PER--SW---------NTGFDWITD---YQGKTVWFVPSIKAG 201 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECCC---CSS--CC---------SSSCHHHHH---CCSCEEEECSSHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCccC---Cch--hh---------HHHHHHHHh---CCCCEEEEcCCHHHH
Confidence 99999999998754332 23344444332111 100 00 112233333 366999999999999
Q ss_pred HHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcC-----------------
Q 007018 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----------------- 342 (621)
Q Consensus 280 e~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d----------------- 342 (621)
+.++..|...|+.+..+||++. ..+++.|++|+.+|||||+++++|+|+|+ ++|||||
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~ 276 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVIL 276 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeee
Confidence 9999999999999999999764 46889999999999999999999999999 9999999
Q ss_pred ---CCCChhHHHHHhcccCCCCC-ccEEEEEecc
Q 007018 343 ---FPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (621)
Q Consensus 343 ---~P~s~~~~~qrvGR~gR~G~-~G~~i~~v~~ 372 (621)
.|.+...|+||+||+||.|+ .|.+++|...
T Consensus 277 ~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 277 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 41
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.1e-41 Score=373.92 Aligned_cols=313 Identities=15% Similarity=0.184 Sum_probs=242.9
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCe
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (621)
..|||+|.++++.++.+++++++++||||||++++.|+...+.. .+.++|||+||++|+.|+++.+++++.+.++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----CCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 37999999999999999999999999999999999999887764 23489999999999999999999998777788
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEE
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~l 203 (621)
+..+.||.+...+ +..+++|+|+||+.+... ....+.++++|||||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 9999998776554 457799999999987533 224578899999999999765 56777888888889999
Q ss_pred EEEccCcHHHHHH-HHhcCCCCceeeeccCCCC----CCCceEE--EEEcch---------------------hhHHHHH
Q 007018 204 LFSATLPSALAEF-AKAGLRDPHLVRLDVDTKI----SPDLKLA--FFTLRQ---------------------EEKHAAL 255 (621)
Q Consensus 204 l~SATl~~~l~~~-~~~~l~~p~~i~~~~~~~~----~~~~~~~--~~~~~~---------------------~~k~~~L 255 (621)
++|||++.....+ ....+.++..+.+...... ....... ...... ..+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 9999997654221 1122223433333222110 1111111 111111 1233445
Q ss_pred HHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec-CcccccCCCCC
Q 007018 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPL 334 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T-dvaarGlDip~ 334 (621)
..++......+++.+|++.+..+++.+++.|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|+|+|+
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 56666555555555555555888999999999998899999999999999999999999999999999 99999999999
Q ss_pred CCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEec
Q 007018 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (621)
Q Consensus 335 v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~ 371 (621)
+++||++++|.++..|+||+||+||.|+.|.++.+++
T Consensus 417 v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 417 LHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999998875544444
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.2e-39 Score=396.04 Aligned_cols=341 Identities=17% Similarity=0.218 Sum_probs=259.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhcC-CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g-~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q 108 (621)
|..+.++++...+|..++|+|.++++.++.+ ++++++||||||||++|.+||++.+... .+.++||++|+++|+.|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 5567889999999999999999999999865 6799999999999999999999998764 35689999999999999
Q ss_pred HHHHH-HHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC-CCcCCcceEEEeccccccCCChH
Q 007018 109 TLKFT-KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFA 186 (621)
Q Consensus 109 ~~~~~-~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~-~~l~~l~~vViDEah~l~~~gf~ 186 (621)
.++.+ +.|+...++++..++|+...+.. ...+++|+||||+++..++..... ..++++++||+||+|.+.+. ..
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NG 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-TH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CC
Confidence 99866 45888889999999987654332 234589999999999777765322 23789999999999998875 34
Q ss_pred HHHHHHH-------HhcccCCcEEEEEccCcHHHHHHHHhc-CCCCceeeeccCCCCCCCceEEEEEcchhhHH------
Q 007018 187 EQLHKIL-------GQLSENRQTLLFSATLPSALAEFAKAG-LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH------ 252 (621)
Q Consensus 187 ~~l~~il-------~~l~~~~q~ll~SATl~~~l~~~~~~~-l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~------ 252 (621)
..+..++ ..++...|++++|||+++. .+++... ......+.+..+.+.. .+...+.........
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPv-pL~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPV-PLELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSS-CEEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCC-CeEEEEEeccCCCchhhhhhh
Confidence 4444443 3456789999999999753 4444432 2233333344333322 244444333322211
Q ss_pred -HHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC----------------------------------CCCceeec
Q 007018 253 -AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------------------GLEPSVCY 297 (621)
Q Consensus 253 -~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----------------------------------g~~~~~l~ 297 (621)
..+...+... ..++++||||+|+..++.++..|... ...+.++|
T Consensus 1142 ~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 2223333333 46789999999999999877666321 23477899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----c------CCCCChhHHHHHhcccCCCCC--ccE
Q 007018 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----W------DFPPKPKIFVHRVGRAARAGR--TGT 365 (621)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~------d~P~s~~~~~qrvGR~gR~G~--~G~ 365 (621)
|+|++.+|..+.+.|++|.++|||||+++++|+|+|..++||. | ..|.++.+|+|++|||||.|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999988883 2 236789999999999999997 699
Q ss_pred EEEEeccccHHHHHH
Q 007018 366 AFSFVTSEDMAYLLD 380 (621)
Q Consensus 366 ~i~~v~~~e~~~l~~ 380 (621)
|++++.+.+..++..
T Consensus 1301 avll~~~~~~~~~~~ 1315 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK 1315 (1724)
T ss_dssp EEEEEEGGGHHHHHH
T ss_pred EEEEecchHHHHHHH
Confidence 999999988776654
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.4e-39 Score=374.41 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=250.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
...+|+++++++.+.+.+...| ..|+++|+++|+.++. ++++++.|+||||||+ ++|++-.........+.+++|+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 3568999999999999999988 7899999999998875 4679999999999999 5665522111111126789999
Q ss_pred cchHHHHHHHHHHHHH-hhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 100 SPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~-l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
+|+|+|+.|+++.+.. ++...+..+..-+.... ....+++|+|+|||++.+++.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 9999999999875433 33222333332221111 1134689999999999988876 3568999999999999
Q ss_pred c-ccCCCh-HHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHH
Q 007018 179 C-LFGMGF-AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (621)
Q Consensus 179 ~-l~~~gf-~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~ 256 (621)
. .++..+ ...+..+... .+..|+++||||++. ..+.. ++.++..+.+.... ..+.+.|......+.....+
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~--~~l~~-~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDA--EKFQR-YFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCC--HHHHH-HTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccH--HHHHH-HhcCCCcccccCcc---cceEEEEecCCchhHHHHHH
Confidence 5 554332 2333444433 357899999999964 34443 44544455443322 23444444444444444444
Q ss_pred HHHHHhc--cCCCcEEEEecChhhHHHHHHHHHH-----------CCCCceeecCCCCHHHHHHHHHHHh-----cCCce
Q 007018 257 YMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE-----------EGLEPSVCYGDMDQDARKIHVSRFR-----ARKTM 318 (621)
Q Consensus 257 ~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~-----------~g~~~~~l~g~l~~~~R~~~l~~F~-----~g~~~ 318 (621)
..+.... ..++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|+ +|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 3333321 2478999999999999999999985 5778999999999999999999999 99999
Q ss_pred EEEecCcccccCCCCCCCEEEEcCC------------------CCChhHHHHHhcccCCCCCccEEEEEeccccH
Q 007018 319 FLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (621)
Q Consensus 319 ILV~TdvaarGlDip~v~~VI~~d~------------------P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~ 375 (621)
|||||+++++|||||++++||++++ |.+...|+||+||+||. ++|.||.|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 89999999999999999 79999999988765
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.4e-39 Score=354.12 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=227.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCe-
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~- 123 (621)
.|+|+|.++++.++.++++++.++||||||++|+.++... +.++|||+|+++|+.||.+.+.+| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5999999999999999999999999999999999988754 457999999999999998877774 577
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEE
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~l 203 (621)
+..+.|+.. ..++|+|+||+.+...+... ..++++|||||||++.+.+|.. ++..+ ...+++
T Consensus 161 v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l 222 (472)
T 2fwr_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRL 222 (472)
T ss_dssp EEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEE
T ss_pred eEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEE
Confidence 777777754 35899999999998776532 2468999999999999888764 44444 467899
Q ss_pred EEEccCcH-------------------HHHHHHHhcCCCCceeeeccCCC--------------------------CCCC
Q 007018 204 LFSATLPS-------------------ALAEFAKAGLRDPHLVRLDVDTK--------------------------ISPD 238 (621)
Q Consensus 204 l~SATl~~-------------------~l~~~~~~~l~~p~~i~~~~~~~--------------------------~~~~ 238 (621)
++|||++. ...++...++..+..+.+..+.. ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999862 23333333333333222211100 0000
Q ss_pred ceEE---------------------EEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeec
Q 007018 239 LKLA---------------------FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (621)
Q Consensus 239 ~~~~---------------------~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~ 297 (621)
.... .+.+....|...|..++... .+.++||||++...++.++..|. +..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 0000 00122344667777888773 67899999999999999998873 56799
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc---cEEEEEecccc
Q 007018 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT---GTAFSFVTSED 374 (621)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~---G~~i~~v~~~e 374 (621)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|+++..|+||+||+||.|+. ..+|.|++.+.
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999854 35566777653
No 45
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.2e-40 Score=378.70 Aligned_cols=305 Identities=17% Similarity=0.213 Sum_probs=220.8
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 37 AIKRKGYK-----VPTPIQR-----KTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 37 ~l~~~g~~-----~ptpiQ~-----~aip~il------~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
+|..+||. .|||+|+ ++||.++ .|+|+++.|+||||||++|++|+++.+.. .+.++|||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 56667888 8999999 9999988 89999999999999999999999988765 367899999
Q ss_pred chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
||++||.|+++.++.+. +. ...+. ... ....+.-+-+.+.+.+.+.+.. ...++++++|||||||++
T Consensus 278 PTr~La~Q~~~~l~~~~----i~--~~~~~--l~~---v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP----VR--YLTPA--VQR---EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SSHHHHHHHHHHTTTSC----CE--ECCC-----C---CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCC----ee--eeccc--ccc---cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc
Confidence 99999999988776442 22 11110 000 0011122344555555555443 356899999999999997
Q ss_pred cCCChHHHHHHHHHhcc-cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHH
Q 007018 181 FGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l 259 (621)
+..+...+..+...++ ..+|+++||||+++.+..+... ++.+..+... +.. .....++..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~-------------~~~-~~~~~~l~~l 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE-------------IPD-RAWSSGFEWI 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC-------------CCS-SCCSSCCHHH
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee-------------cCH-HHHHHHHHHH
Confidence 3323334444444443 6799999999998664332211 1111111110 111 1111122233
Q ss_pred HHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE
Q 007018 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (621)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI 339 (621)
. ..++++||||+++..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||
T Consensus 407 ~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 T---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp H---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred H---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 2 257899999999999999999999999999999994 688899999999999999999999999999 99999
Q ss_pred E--------------------cCCCCChhHHHHHhcccCCC-CCccEEEEEe---ccccHHHHHHHHHH
Q 007018 340 N--------------------WDFPPKPKIFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLF 384 (621)
Q Consensus 340 ~--------------------~d~P~s~~~~~qrvGR~gR~-G~~G~~i~~v---~~~e~~~l~~l~~~ 384 (621)
+ ||+|.++..|+||+||+||. |+.|.|++|+ ++.|..++..++..
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~ 547 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAK 547 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHH
Confidence 8 67899999999999999999 7899999996 56776666555543
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.1e-40 Score=363.41 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=198.2
Q ss_pred HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHH
Q 007018 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (621)
Q Consensus 56 ~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~ 135 (621)
.++.|+++++.||||||||++|++|+++.+.. .+.++||++||++||.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~---- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF---- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc----
Confidence 35789999999999999999999999998765 3678999999999999999877643 222211110
Q ss_pred HHHHHhCCCCEEEECchHHHHhHhhc-------CCCCcCCcceEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEc
Q 007018 136 QFEELAQNPDIIIATPGRLMHHLSEV-------EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (621)
Q Consensus 136 ~~~~l~~~~~IiV~Tpgrl~~~l~~~-------~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SA 207 (621)
-.|+||+++.+++... ....++++++|||||||++ +.++...+..+...+ +..+|+++|||
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred ----------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 0366776654433321 1234889999999999998 444433333333333 36799999999
Q ss_pred cCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHH
Q 007018 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR 287 (621)
Q Consensus 208 Tl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~ 287 (621)
|+++.+..++.. .+....+.. .+.... ...++..+.+ .++++||||+++..++.++..|.
T Consensus 139 T~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~-~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~ 198 (440)
T 1yks_A 139 TPPGTSDEFPHS---NGEIEDVQT-------------DIPSEP-WNTGHDWILA---DKRPTAWFLPSIRAANVMAASLR 198 (440)
T ss_dssp SCTTCCCSSCCC---SSCEEEEEC-------------CCCSSC-CSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhc---CCCeeEeee-------------ccChHH-HHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 998764433221 111111111 111111 1112233333 36899999999999999999999
Q ss_pred HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE-------------------cCCCCChh
Q 007018 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------------------WDFPPKPK 348 (621)
Q Consensus 288 ~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~-------------------~d~P~s~~ 348 (621)
..++.+..+|| ++|..+++.|++|+.+|||||+++++|+|+| +++||+ |+.|.+..
T Consensus 199 ~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~ 273 (440)
T 1yks_A 199 KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 273 (440)
T ss_dssp HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHH
T ss_pred HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHH
Confidence 99999999999 3577899999999999999999999999999 999986 89999999
Q ss_pred HHHHHhcccCCC-CCccEEEEEe---ccccHHHHHHHHHHh
Q 007018 349 IFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (621)
Q Consensus 349 ~~~qrvGR~gR~-G~~G~~i~~v---~~~e~~~l~~l~~~l 385 (621)
.|+||+||+||. |++|.|++|+ ++.|..++..++..+
T Consensus 274 ~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 274 SAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999998 6899999996 677777666666543
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=8.1e-40 Score=367.19 Aligned_cols=278 Identities=19% Similarity=0.288 Sum_probs=215.7
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEE
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~ 125 (621)
++++|..+++.+..+++++++|+||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+..+.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~---~g~~vg 286 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKA---HGIDPN 286 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHH---HSCCCE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHH---hCCCee
Confidence 445555555666678899999999999999999998862 568999999999999998865443 245566
Q ss_pred EEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCc--EE
Q 007018 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ--TL 203 (621)
Q Consensus 126 ~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q--~l 203 (621)
..+|+.. ...+++|+|+|||+|+ .. ..+.++++++||||||| +++++|...+..++..++..++ ++
T Consensus 287 ~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 287 IRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp EECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred EEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEE
Confidence 7777754 3567999999999984 22 46778899999999995 5678888899999999988877 67
Q ss_pred EEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHH
Q 007018 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (621)
Q Consensus 204 l~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~ 283 (621)
++|||+|..+. ...|....+.... ...+ .+ ...... +. ...++++||||+|++.++.++
T Consensus 355 l~SAT~~~~i~------~~~p~i~~v~~~~--~~~i--~~--~~~~~~-------l~--~~~~~~vLVFv~Tr~~ae~la 413 (666)
T 3o8b_A 355 LATATPPGSVT------VPHPNIEEVALSN--TGEI--PF--YGKAIP-------IE--AIRGGRHLIFCHSKKKCDELA 413 (666)
T ss_dssp EEESSCTTCCC------CCCTTEEEEECBS--CSSE--EE--TTEEEC-------GG--GSSSSEEEEECSCHHHHHHHH
T ss_pred EECCCCCcccc------cCCcceEEEeecc--cchh--HH--HHhhhh-------hh--hccCCcEEEEeCCHHHHHHHH
Confidence 77999987421 2233322221111 1111 11 000000 01 125789999999999999999
Q ss_pred HHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEE----------EcC-----------
Q 007018 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----------NWD----------- 342 (621)
Q Consensus 284 ~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI----------~~d----------- 342 (621)
+.|...++.+..+||+|++.+ |.++..+||||||++++|||+| +++|| |||
T Consensus 414 ~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~ 485 (666)
T 3o8b_A 414 AKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTT 485 (666)
T ss_dssp HHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEE
T ss_pred HHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccccc
Confidence 999999999999999999875 4567779999999999999998 99988 788
Q ss_pred CCCChhHHHHHhcccCCCCCccEEEEEeccccHHH
Q 007018 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (621)
Q Consensus 343 ~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~ 377 (621)
.|.+...|+||+||+|| |++|. |+|+++.|...
T Consensus 486 ~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999877643
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.9e-38 Score=384.64 Aligned_cols=333 Identities=20% Similarity=0.299 Sum_probs=251.0
Q ss_pred CCCCChHHHHHHHHHHhc-CCcEEEEcCCCchHHHHHHHHHHHHHhhhCC------CCCeEEEEEcchHHHHHHHHHHHH
Q 007018 42 GYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPTRDLALQTLKFTK 114 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~-g~dvv~~a~TGSGKT~afllp~l~~L~~~~~------~~g~~~LIL~PtreLa~Q~~~~~~ 114 (621)
||+.++|+|.+++|.++. +++++++||||||||++|.+|++..|..+.. ..+.++||++|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999875 7899999999999999999999999976432 346799999999999999999888
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC-CCcCCcceEEEeccccccCCChHHHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~-~~l~~l~~vViDEah~l~~~gf~~~l~~il 193 (621)
+.....|+++..++|+.....+ ...+++|+||||+++..++..... ..++++++|||||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8777789999999998765432 134689999999998655543211 1378899999999998876 4555554444
Q ss_pred H-------hcccCCcEEEEEccCcHHHHHHHHhcCCCCc--eeeeccCCCCCCCceEEEEEcchhh---HHHHH----HH
Q 007018 194 G-------QLSENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLRQEE---KHAAL----LY 257 (621)
Q Consensus 194 ~-------~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~~~~~~~~~~~~~---k~~~L----~~ 257 (621)
. .++...|+|++|||+|+ ..+++...-.++. ...++.+.+.. .+...++.+.... ....+ ..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPv-pL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPV-PLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSS-CEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccC-ccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 45678999999999985 3555543322221 22233332222 3444444443321 12222 22
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHC-------------------------------------CCCceeecCCC
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGDM 300 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-------------------------------------g~~~~~l~g~l 300 (621)
.+.+. ..++++||||+|++.++.++..|.+. ...++++||+|
T Consensus 310 ~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL 388 (1724)
T 4f92_B 310 KIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM 388 (1724)
T ss_dssp HHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred HHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence 22222 34679999999999998888777531 12367899999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----cC------CCCChhHHHHHhcccCCCCC--ccEEEE
Q 007018 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGTAFS 368 (621)
Q Consensus 301 ~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~----~d------~P~s~~~~~qrvGR~gR~G~--~G~~i~ 368 (621)
++.+|..+.+.|++|.++|||||++++.|+|+|..++||. || .|.++..|.||+|||||.|. .|.+++
T Consensus 389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii 468 (1724)
T 4f92_B 389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL 468 (1724)
T ss_dssp CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence 9999999999999999999999999999999999999984 44 35689999999999999875 699999
Q ss_pred EeccccHHHHHHH
Q 007018 369 FVTSEDMAYLLDL 381 (621)
Q Consensus 369 ~v~~~e~~~l~~l 381 (621)
+..+++..+...+
T Consensus 469 ~~~~~~~~~~~~l 481 (1724)
T 4f92_B 469 ITSHGELQYYLSL 481 (1724)
T ss_dssp EEESTTCCHHHHH
T ss_pred EecchhHHHHHHH
Confidence 9999887665543
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.4e-37 Score=309.21 Aligned_cols=211 Identities=36% Similarity=0.575 Sum_probs=195.6
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC---CCCCeEEE
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRAL 97 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~---~~~g~~~L 97 (621)
...+|++++|++.+++++.++||..|||+|.+++|.++.|+|+++.||||||||++|++|++..+.... ...+.++|
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999987532 13477899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
||+||++|+.|+++.++++....++.+..++||.....+...+..+++|+|+||+++.+++.. ....+.++++||||||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCH
Confidence 999999999999999999999999999999999999988888888999999999999999976 4677999999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (621)
|++.+++|...+..++..+++.+|+++||||+|+.+..+++.++.+|..+.+...
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999998877643
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=2.2e-39 Score=355.21 Aligned_cols=282 Identities=18% Similarity=0.211 Sum_probs=200.6
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
|+.++..+| ...+..|+++++.||||||||++|++|+++.+.. .+.++||++|||+|+.|+++.++ +
T Consensus 6 g~~q~~~~~---~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g 72 (459)
T 2z83_A 6 GGQQMGRGS---PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------G 72 (459)
T ss_dssp ------------CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------T
T ss_pred cHHHHHHHH---HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------C
Confidence 444444444 3345678999999999999999999999998765 36789999999999999988775 2
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc-----ccCCChHHHHHHHHHhc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-----LFGMGFAEQLHKILGQL 196 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~-----l~~~gf~~~l~~il~~l 196 (621)
+.+....+.... .-..+..+.++|.+.+.+.+.. ...++++++|||||||+ ++.++|...+. .
T Consensus 73 ~~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~ 140 (459)
T 2z83_A 73 LPVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----E 140 (459)
T ss_dssp SCEEECC-------------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----H
T ss_pred ceEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----c
Confidence 333222221110 0123456788999988877765 46688999999999998 34444433322 2
Q ss_pred ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecCh
Q 007018 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK 276 (621)
Q Consensus 197 ~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~ 276 (621)
+..+|+++||||+|..+..+... ..|... +.... . ......++..+.+ .++++||||+|+
T Consensus 141 ~~~~~~il~SAT~~~~~~~~~~~--~~pi~~-~~~~~-------------~-~~~~~~~~~~l~~---~~~~~LVF~~s~ 200 (459)
T 2z83_A 141 LGEAAAIFMTATPPGTTDPFPDS--NAPIHD-LQDEI-------------P-DRAWSSGYEWITE---YAGKTVWFVASV 200 (459)
T ss_dssp TTSCEEEEECSSCTTCCCSSCCC--SSCEEE-EECCC-------------C-SSCCSSCCHHHHH---CCSCEEEECSCH
T ss_pred cCCccEEEEEcCCCcchhhhccC--CCCeEE-ecccC-------------C-cchhHHHHHHHHh---cCCCEEEEeCCh
Confidence 36899999999998764332211 222221 11100 0 0111112233433 267999999999
Q ss_pred hhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEE----------------
Q 007018 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN---------------- 340 (621)
Q Consensus 277 ~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~---------------- 340 (621)
..++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|+|+|+ ++||+
T Consensus 201 ~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~ 275 (459)
T 2z83_A 201 KMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGR 275 (459)
T ss_dssp HHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCE
T ss_pred HHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccc
Confidence 99999999999999999999995 5677899999999999999999999999999 99999
Q ss_pred ----cCCCCChhHHHHHhcccCCCCC-ccEEEEEeccc
Q 007018 341 ----WDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTSE 373 (621)
Q Consensus 341 ----~d~P~s~~~~~qrvGR~gR~G~-~G~~i~~v~~~ 373 (621)
||.|.+...|+||+||+||.|. +|.+++|+++.
T Consensus 276 ~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 276 VILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred cccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 7799999999999999999997 89999999875
No 51
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=316.48 Aligned_cols=205 Identities=33% Similarity=0.573 Sum_probs=185.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
..+|++++|++.++++|..+||..|||+|.++||.++.| +|++++|+||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEEE
Confidence 358999999999999999999999999999999999998 9999999999999999999999998653 246689999
Q ss_pred cchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
+|||+||.|+++.++.++... ++.+..++||....... ..+++|+|||||+|++++.+.+.+.++++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998765 78899999987754332 46789999999999999976566789999999999999
Q ss_pred cccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeecc
Q 007018 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (621)
Q Consensus 179 ~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (621)
++++ .+|...+..|+..++..+|+++||||+|+.+..+++.++.+|..|.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9997 7999999999999999999999999999999999999999999988754
No 52
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.5e-36 Score=292.84 Aligned_cols=203 Identities=32% Similarity=0.615 Sum_probs=187.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+.+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 5689999999999999999999999999999999999999999999999999999999999987643 24678999999
Q ss_pred hHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc
Q 007018 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l 180 (621)
|++|+.|+++.++++.... ++.+..++||.....+...+..+++|+|+||+++.+.+.. ....+.++++||+||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHh
Confidence 9999999999999998777 7899999999998888878888999999999999998876 4567889999999999999
Q ss_pred cCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCcee
Q 007018 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (621)
Q Consensus 181 ~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (621)
.+.+|...+..++..++..+|+++||||+|+.+.++++.++.+|..+
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999999999999999999999999999998655
No 53
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=302.77 Aligned_cols=207 Identities=37% Similarity=0.632 Sum_probs=192.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+++++.|+||||||++|++|+++.+.... .+.++||++|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--QRLFALVLTP 119 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--CSSCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--CCceEEEEeC
Confidence 45799999999999999999999999999999999999999999999999999999999999887642 3568999999
Q ss_pred hHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 102 treLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
|++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||+||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999998889999999999998888888888999999999999999887556778999999999999999
Q ss_pred CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeec
Q 007018 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (621)
Q Consensus 182 ~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (621)
+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+.
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999887653
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.4e-37 Score=332.53 Aligned_cols=270 Identities=17% Similarity=0.223 Sum_probs=199.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.|+++++.||||||||++|++|+++.+.. .|.+++|++||++||.|+++.+. ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 37899999999999999999999977654 36789999999999999887664 4555555554221
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHHHH
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFA 217 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~ 217 (621)
.-..+..+.+.|.+.+.+.+.. ...+.++++|||||||++ +.++......+.... +..+|+++||||+++.+.++.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1123456778899998887765 456899999999999996 544444444444432 568999999999987533221
Q ss_pred HhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeec
Q 007018 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (621)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~ 297 (621)
. .++..+.+... + ...+...++..+.+ .++++||||+++.+++.+++.|...++.+..+|
T Consensus 143 ~---~~~~i~~~~~~-------------~-~~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 143 P---SNSPIIDEETR-------------I-PDKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp C---CSSCCEEEECC-------------C-CSSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred C---CCCceeecccc-------------C-CHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 11112211111 0 01111223344443 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCE-----------------EEEcCCCCChhHHHHHhcccCCC
Q 007018 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------------VINWDFPPKPKIFVHRVGRAARA 360 (621)
Q Consensus 298 g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~-----------------VI~~d~P~s~~~~~qrvGR~gR~ 360 (621)
|+ .|..+++.|++|+.+|||||+++++|+|+| +++ ||+++.|.+...|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 467789999999999999999999999999 655 67889999999999999999999
Q ss_pred CC-ccEEEEEec
Q 007018 361 GR-TGTAFSFVT 371 (621)
Q Consensus 361 G~-~G~~i~~v~ 371 (621)
|. .|.++++..
T Consensus 278 g~~~~~~~~~~~ 289 (431)
T 2v6i_A 278 PEKLGDIYAYSG 289 (431)
T ss_dssp TTCCCCEEEECS
T ss_pred CCCCCeEEEEcC
Confidence 85 566677663
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-36 Score=305.97 Aligned_cols=220 Identities=37% Similarity=0.597 Sum_probs=190.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-------CCCC
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGG 93 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-------~~~g 93 (621)
...+|++++|++.++++|..+||..|||+|.++++.++.|+|+++.||||||||++|++|+++.+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 345799999999999999999999999999999999999999999999999999999999999886532 1235
Q ss_pred eEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEE
Q 007018 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (621)
Q Consensus 94 ~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vV 173 (621)
.++|||+||++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEE
Confidence 6899999999999999999999998889999999999998888888888999999999999999876 356789999999
Q ss_pred EeccccccCCChHHHHHHHHHh--ccc--CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceE
Q 007018 174 FDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241 (621)
Q Consensus 174 iDEah~l~~~gf~~~l~~il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~ 241 (621)
+||||++.+++|...+..++.. ++. .+|+++||||+|+.+.++++.++.+|..+.+.......+++++
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 9999999999999999999985 444 7899999999999999999999999998888766554444443
No 56
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.4e-36 Score=298.10 Aligned_cols=207 Identities=36% Similarity=0.618 Sum_probs=182.6
Q ss_pred CCCCCccC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhh----CCCCCe
Q 007018 20 SKSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGV 94 (621)
Q Consensus 20 ~~~~~f~~-l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~----~~~~g~ 94 (621)
+...+|++ +++++.++++|.++||..|||+|.+++|.++.|+|+++.||||||||++|++|++..+... ....+.
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~ 95 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP 95 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC
T ss_pred CChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC
Confidence 44678998 7999999999999999999999999999999999999999999999999999999887642 112577
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEE
Q 007018 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vVi 174 (621)
++||++||++|+.|+++.++.+. ..++.+..++||.....+...+..+++|+|+||+++.+++.. ....+.++++|||
T Consensus 96 ~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lVi 173 (228)
T 3iuy_A 96 GMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVI 173 (228)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEE
T ss_pred cEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEE
Confidence 89999999999999999999986 568899999999988888888888999999999999998876 4677899999999
Q ss_pred eccccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceee
Q 007018 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (621)
Q Consensus 175 DEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~ 228 (621)
||||++.+++|...+..++..++..+|+++||||+|+.+.+++..++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999999998765
No 57
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=295.71 Aligned_cols=209 Identities=36% Similarity=0.669 Sum_probs=188.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC--CCCCeEEEEE
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~--~~~g~~~LIL 99 (621)
..+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.... ...+.++||+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999886421 1246789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||++|+.|+++.+++++...++.+..++||.....+...+ .+++|+|+||+++.+++.....+.+.++++||+||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988889999999998877766655 57999999999999998775457788999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeecc
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (621)
+.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.++.
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999999999999999999999999999999999999999998887653
No 58
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.9e-36 Score=295.99 Aligned_cols=206 Identities=32% Similarity=0.584 Sum_probs=187.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.+|++++|++.+++++.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||++||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 81 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCc
Confidence 579999999999999999999999999999999999999999999999999999999999987643 246789999999
Q ss_pred HHHHHHHHHHHHHhhccC----CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 103 RDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~----~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
++|+.|+++.++++.... ++.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999998776 7889999999877766555566899999999999998876 45778999999999999
Q ss_pred cccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeecc
Q 007018 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (621)
Q Consensus 179 ~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (621)
++.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.+..
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999999999999999999999999999998776543
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=8.9e-36 Score=298.05 Aligned_cols=207 Identities=33% Similarity=0.580 Sum_probs=178.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
...+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.||||||||++|++|+++.+... ..+.++||++
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~ 105 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLA 105 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999987642 2467899999
Q ss_pred chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCC-CCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 101 PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~-~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
||++|+.|+++.++.++...++.+..++||.....+...+..+ ++|+|+||+++.+++.. ..+.+.++++|||||||+
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHH
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchH
Confidence 9999999999999999988899999999998887777666554 99999999999999876 457788999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeec
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (621)
+.+++|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.++
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999887664
No 60
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2e-35 Score=294.12 Aligned_cols=207 Identities=32% Similarity=0.535 Sum_probs=185.7
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
....+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.++||||||++|++|+++.+... ..+.++||+
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil 98 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILIL 98 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999987643 246789999
Q ss_pred cchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
+||++|+.|+++.++.++... ++++..++||.....+...+ .+++|+|+||+++.+++.. ..+.+.++++||+||||
T Consensus 99 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 99 APTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEAD 176 (230)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHH
T ss_pred eCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCch
Confidence 999999999999999998665 89999999999887776655 5799999999999998876 45778999999999999
Q ss_pred cccCCC-hHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeec
Q 007018 179 CLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (621)
Q Consensus 179 ~l~~~g-f~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (621)
++.++| |...+..++..++..+|+++||||+|+.+.+++..++.+|..+.++
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 999998 9999999999999999999999999999999999999999887653
No 61
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=302.13 Aligned_cols=205 Identities=39% Similarity=0.623 Sum_probs=184.7
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC--CCCCeEEE
Q 007018 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRAL 97 (621)
Q Consensus 22 ~~~f~~l~--L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~--~~~g~~~L 97 (621)
..+|++++ |++.++++|.++||..|+|+|.++++.++.|+|++++||||||||++|++|+++.+.... ...+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 34677777 999999999999999999999999999999999999999999999999999999887532 12477899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
||+||++|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||+++.+++.....+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999989999999999999888888887889999999999999988755678899999999999
Q ss_pred ccccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCce
Q 007018 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHL 226 (621)
Q Consensus 178 h~l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~ 226 (621)
|++.+++|...+..++..++..+|+++||||+|+.+..+++..++++.+
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999886544
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.1e-35 Score=333.89 Aligned_cols=302 Identities=16% Similarity=0.182 Sum_probs=190.2
Q ss_pred CChHHHHHHHHHHhc----C-CcEEEEcCCCchHHHHHHHHHHHHHhhh----CCCCCeEEEEEcchHHHHHHHH-HHHH
Q 007018 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALILSPTRDLALQTL-KFTK 114 (621)
Q Consensus 45 ~ptpiQ~~aip~il~----g-~dvv~~a~TGSGKT~afllp~l~~L~~~----~~~~g~~~LIL~PtreLa~Q~~-~~~~ 114 (621)
.|+|+|.++++.++. | +++++.++||||||++++..+...+... ....+.++|||+||++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999886 4 6699999999999999765544433321 0114678999999999999998 6666
Q ss_pred HhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhh---cCCCCcCCcceEEEeccccccCCChHHHHHH
Q 007018 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE---VEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (621)
Q Consensus 115 ~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~---~~~~~l~~l~~vViDEah~l~~~gf~~~l~~ 191 (621)
.++ ..+..+.++. ...+.+|+|+||++|...+.. ...+....+++||+||||++...+ ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 554 3334443332 345789999999999876532 123567789999999999987643 345667
Q ss_pred HHHhcccCCcEEEEEccCcHHHHHHHHhcCCCC------------------ceeeeccCCCCC-------------CCce
Q 007018 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDP------------------HLVRLDVDTKIS-------------PDLK 240 (621)
Q Consensus 192 il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p------------------~~i~~~~~~~~~-------------~~~~ 240 (621)
++..++ ..++++||||+......-....++.+ ..+.+....... ..+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 777776 47899999998643221122222222 222221110000 0000
Q ss_pred EEEEEcch-------hhHHHHHHH----HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCC--------ceeecCCCC
Q 007018 241 LAFFTLRQ-------EEKHAALLY----MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE--------PSVCYGDMD 301 (621)
Q Consensus 241 ~~~~~~~~-------~~k~~~L~~----~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~--------~~~l~g~l~ 301 (621)
...+.... ..+...+.. ++... ..++++||||+++.+++.++..|...+.. +..+||+++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 00000000 112222222 33332 45689999999999999999999876432 667899876
Q ss_pred HHHHHHHHHHHhcCCce---EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCC
Q 007018 302 QDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (621)
Q Consensus 302 ~~~R~~~l~~F~~g~~~---ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~ 362 (621)
+ .|..++++|++|+.+ |||+|+++++|+|+|.+++||++++|.++..|+||+||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 789999999998876 88999999999999999999999999999999999999999874
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=6.6e-35 Score=284.61 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=186.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcch
Q 007018 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPT 102 (621)
Q Consensus 24 ~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~Pt 102 (621)
+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.... ...+.++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 699999999999999999999999999999999999999999999999999999999999886421 2346789999999
Q ss_pred HHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccC
Q 007018 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (621)
Q Consensus 103 reLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~ 182 (621)
++|+.|+++.++.+... +.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++||+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998754 778899999988888888878899999999999999877 467789999999999999999
Q ss_pred CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeec
Q 007018 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (621)
Q Consensus 183 ~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (621)
.+|...+..++..++..+|+++||||+|+.+.++++.++.+|..+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999887653
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.2e-33 Score=312.66 Aligned_cols=321 Identities=20% Similarity=0.218 Sum_probs=243.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|.. |+++|.-..-.+..|+ ++...||+|||+++.+|++-... .|..+.|++|++.||.|-++++..+..+.
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL-----~G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNAL-----IGKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHh-----cCCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 5775 9999999998888887 99999999999999999875433 26779999999999999999999999999
Q ss_pred CCeEEEEEcC--------------------------------------------------CChHHHHHHHhCCCCEEEEC
Q 007018 121 DLRISLLVGG--------------------------------------------------DSMESQFEELAQNPDIIIAT 150 (621)
Q Consensus 121 ~l~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~IiV~T 150 (621)
|+++++++.. .+..+.... -.+||+.+|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEcc
Confidence 9999999982 111111111 147999999
Q ss_pred chHH-HHhHhhc-----CCCCcCCcceEEEecccccc-CC--------C-------hHHHHHHHHHhc------------
Q 007018 151 PGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GM--------G-------FAEQLHKILGQL------------ 196 (621)
Q Consensus 151 pgrl-~~~l~~~-----~~~~l~~l~~vViDEah~l~-~~--------g-------f~~~l~~il~~l------------ 196 (621)
..-| ++.|..+ ...-...+.+.||||+|.++ +. | ....+..+...+
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9876 4454431 12235678899999999764 00 0 001111111000
Q ss_pred --------------------------------------------cc----------------------------------
Q 007018 197 --------------------------------------------SE---------------------------------- 198 (621)
Q Consensus 197 --------------------------------------------~~---------------------------------- 198 (621)
..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 00
Q ss_pred ---------------------------CCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhH
Q 007018 199 ---------------------------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251 (621)
Q Consensus 199 ---------------------------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k 251 (621)
=..+.+||+|......+|...+- ...+.+.........-....+.....+|
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~--l~vv~IPtnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG--MEVVVIPTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC--CCEEECCCSSCCCCEECCCEEESSHHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC--CeEEEECCCCCcceeecCcEEEecHHHH
Confidence 01578999999988888887773 3344444332221111123455677889
Q ss_pred HHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCC
Q 007018 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331 (621)
Q Consensus 252 ~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlD 331 (621)
..+++..+......+.++||||+|++.++.++..|...|+++.++||+..+.++..+...|+.| .|+||||+|+||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 9999999987666688999999999999999999999999999999996555555555666665 59999999999999
Q ss_pred CC--------CCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccH
Q 007018 332 IP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (621)
Q Consensus 332 ip--------~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~ 375 (621)
|+ +..+|||+++|.++..|+||+||+||+|.+|.+++|++.+|.
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 98 667999999999999999999999999999999999999773
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=6.1e-35 Score=288.77 Aligned_cols=209 Identities=31% Similarity=0.548 Sum_probs=180.6
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
+...+|++++|++.+++++.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil 88 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALML 88 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999988643 246789999
Q ss_pred cchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccc
Q 007018 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~ 179 (621)
+||++|+.|+++.++.++...++.+..++||.....+...+.. ++|+|+||+++.+++.. ....+.++++||+||||+
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 89 APTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHH
T ss_pred ECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhH
Confidence 9999999999999999998889999999999887766655544 99999999999998876 467789999999999999
Q ss_pred ccCCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC
Q 007018 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (621)
Q Consensus 180 l~~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (621)
+.+++|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.++.+
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999988876543
No 66
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.1e-35 Score=333.50 Aligned_cols=313 Identities=18% Similarity=0.220 Sum_probs=222.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHH
Q 007018 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (621)
Q Consensus 31 ~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~ 110 (621)
..+.++++...++ |.++ ......+.|++++++||||||||+ ++++.+... ..++|++|||+||.|++
T Consensus 130 ~~d~l~~i~dl~~--p~~~--~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PPNW--YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp CHHHHHHHTBCCC--GGGG--CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHH
T ss_pred CHHHHHHHhhccC--hhhh--CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHH
Confidence 4455555544433 3322 223355789999999999999998 444455442 23599999999999999
Q ss_pred HHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHH
Q 007018 111 KFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (621)
Q Consensus 111 ~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~ 190 (621)
+.++.. ++.+..++|+..... ..-....+++++|++.+ .....+++|||||||++.+.+|...+.
T Consensus 197 ~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 197 EKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHh---------hhcccCCEEEEecceecCCccchHHHH
Confidence 988876 578888998865300 00001245555555322 124678999999999999999999999
Q ss_pred HHHHhcc-cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcE
Q 007018 191 KILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (621)
Q Consensus 191 ~il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~ 269 (621)
.++..++ ...+++++|||. +.+..++... ..+..+.. .....+ + .+. .. .+..+.. .....
T Consensus 262 ~~l~~l~~~~i~il~~SAT~-~~i~~l~~~~-~~~~~v~~--~~r~~~-l--~~~--~~------~l~~l~~---~~~g~ 323 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAI-DLVMELMYTT-GEEVEVRD--YKRLTP-I--SVL--DH------ALESLDN---LRPGD 323 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGH-HHHHHHHHHH-TCCEEEEE--CCCSSC-E--EEC--SS------CCCSGGG---CCTTE
T ss_pred HHHHccCccceEEEeccchH-HHHHHHHHhc-CCceEEEE--eeecch-H--HHH--HH------HHHHHHh---cCCCC
Confidence 9999888 788999999995 3344444433 22222211 111111 1 000 00 0001111 13456
Q ss_pred EEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc--CCceEEEecCcccccCCCCCCCEEEEcCC----
Q 007018 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---- 343 (621)
Q Consensus 270 IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~--g~~~ILV~TdvaarGlDip~v~~VI~~d~---- 343 (621)
||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+ ++++||++++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ----------CCChhHHHHHhcccCCCCCc---cEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 344 ----------PPKPKIFVHRVGRAARAGRT---GTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 344 ----------P~s~~~~~qrvGR~gR~G~~---G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
|.+...|+||+||+||.|.. |.|+. +.+.+...+..+......++..
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHHHHHHHSCCCCCCC
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHHHHHHhcCcchhhh
Confidence 88999999999999999975 55544 4556666666665544444443
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-34 Score=284.97 Aligned_cols=206 Identities=29% Similarity=0.561 Sum_probs=184.5
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEE
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL 99 (621)
....+|++++|++.++++|.++||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++||+
T Consensus 11 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 88 (220)
T 1t6n_A 11 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVM 88 (220)
T ss_dssp ---CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEE
T ss_pred ccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEE
Confidence 345689999999999999999999999999999999999999999999999999999999999887542 235689999
Q ss_pred cchHHHHHHHHHHHHHhhccC-CCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 100 ~PtreLa~Q~~~~~~~l~~~~-~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
+||++|+.|+++.++++.... ++++..++||.....+...+. ..++|+|+||+++.+++.. ..+.+.++++||+|||
T Consensus 89 ~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 89 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDEC 167 (220)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESH
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCH
Confidence 999999999999999998776 799999999998887777664 4679999999999998876 4577899999999999
Q ss_pred ccccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCCceee
Q 007018 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (621)
Q Consensus 178 h~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~ 228 (621)
|++.+ .+|...+..++..++..+|++++|||+|+.+.++++.++.+|..+.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99987 5888999999999999999999999999999999999999998764
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=7.2e-34 Score=336.72 Aligned_cols=321 Identities=19% Similarity=0.200 Sum_probs=224.5
Q ss_pred CChHHHHHHHHHHhcC--CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
.|+|+|.+++..++.. .++++.++||+|||++++..+.+.+... ...++|||||+ .|+.||...+.+.. ++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRRF---NL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHHS---CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHHh---CC
Confidence 6999999999998864 5799999999999999988877766542 23479999999 99999888774432 56
Q ss_pred eEEEEEcCCChHHHHHH---HhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChH-HHHHHHHHhc-c
Q 007018 123 RISLLVGGDSMESQFEE---LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQL-S 197 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~---l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~-~~l~~il~~l-~ 197 (621)
.+..+.|+.. ...... .....+|+|+|++.+.........+...++++|||||||++...+.. ......+..+ .
T Consensus 226 ~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 6665554332 221111 12357999999998864322212244568999999999999764421 1112223333 2
Q ss_pred cCCcEEEEEccCcH-H---HH----------------------------HHHHhcCCC----------------------
Q 007018 198 ENRQTLLFSATLPS-A---LA----------------------------EFAKAGLRD---------------------- 223 (621)
Q Consensus 198 ~~~q~ll~SATl~~-~---l~----------------------------~~~~~~l~~---------------------- 223 (621)
..++++++|||+.. . +. ......+..
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 45679999999832 0 00 000000000
Q ss_pred ------------------------------Cceeeecc-CCCCCC--CceEEEE--------------------------
Q 007018 224 ------------------------------PHLVRLDV-DTKISP--DLKLAFF-------------------------- 244 (621)
Q Consensus 224 ------------------------------p~~i~~~~-~~~~~~--~~~~~~~-------------------------- 244 (621)
..+++-.. .....+ .......
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 00000000 000000 0000111
Q ss_pred -------------------EcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH-CCCCceeecCCCCHHH
Q 007018 245 -------------------TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDA 304 (621)
Q Consensus 245 -------------------~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~-~g~~~~~l~g~l~~~~ 304 (621)
.+....|...|..++.. ..+.++||||+++.+++.++..|.. .|+.+..+||+|++.+
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 11223477778888876 3688999999999999999999995 6999999999999999
Q ss_pred HHHHHHHHhcCC--ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEE--eccccH
Q 007018 305 RKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF--VTSEDM 375 (621)
Q Consensus 305 R~~~l~~F~~g~--~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~--v~~~e~ 375 (621)
|..+++.|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.++++ +.....
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 999999999998 99999999999999999999999999999999999999999999999865555 444433
No 69
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=287.28 Aligned_cols=210 Identities=34% Similarity=0.558 Sum_probs=181.2
Q ss_pred CCCccCC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEE
Q 007018 22 SGGFESL----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (621)
Q Consensus 22 ~~~f~~l----~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~L 97 (621)
..+|+++ +|++.++++|.++||..|||+|.+++|.++.|+++++.||||||||++|++|+++.+... ...+.++|
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~l 102 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRAL 102 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEE
Confidence 4578887 899999999999999999999999999999999999999999999999999999988642 23477899
Q ss_pred EEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH-HHhCCCCEEEECchHHHHhHhhcC-CCCcCCcceEEEe
Q 007018 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE-ELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFD 175 (621)
Q Consensus 98 IL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~-~l~~~~~IiV~Tpgrl~~~l~~~~-~~~l~~l~~vViD 175 (621)
|++||++|+.|+++.++++....++.+..+.|+......+. ....+++|+|+||+++.+++.... .+.+.++++||||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 103 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 99999999999999999999888898888887654333221 224578999999999999987633 4678999999999
Q ss_pred ccccccC---CChHHHHHHHHHhc-ccCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccC
Q 007018 176 EADCLFG---MGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (621)
Q Consensus 176 Eah~l~~---~gf~~~l~~il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (621)
|||++.+ .+|...+..++..+ +...|+++||||+|+.+..+++.++.+|..+.+...
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999987 68999999998776 457899999999999999999999999998887653
No 70
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.4e-33 Score=308.48 Aligned_cols=312 Identities=16% Similarity=0.230 Sum_probs=223.5
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+|+|.++++.+. .++++++.++||+|||++++..+...... ....++|||||+ .|+.||.+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~---~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 69999999998774 57899999999999999976555443322 134579999995 588999999988863
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCC
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~ 200 (621)
++++..+.|+... ....+++|+|+||+++..... +....+++||+||||++.+.+ ......+..++ ..
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 4666666665532 123468999999999875432 334578999999999998754 33445555564 45
Q ss_pred cEEEEEccCcH-HHHHHH---H---------------------------------hcCCCCceeeeccC-----CCCCCC
Q 007018 201 QTLLFSATLPS-ALAEFA---K---------------------------------AGLRDPHLVRLDVD-----TKISPD 238 (621)
Q Consensus 201 q~ll~SATl~~-~l~~~~---~---------------------------------~~l~~p~~i~~~~~-----~~~~~~ 238 (621)
+.+++|||+.. .+.++. . ..+ .|..++-... ...++
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~- 256 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPD- 256 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCC-
Confidence 68999999832 111111 1 011 1222221111 01111
Q ss_pred ceEEEEEcc---------------------------------------------------------hhhHHHHHHHHHHH
Q 007018 239 LKLAFFTLR---------------------------------------------------------QEEKHAALLYMIRE 261 (621)
Q Consensus 239 ~~~~~~~~~---------------------------------------------------------~~~k~~~L~~~l~~ 261 (621)
.....+.+. ...|...+..++.+
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 111111111 12355566677777
Q ss_pred hccCCCcEEEEecChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcC-Cce-EEEecCcccccCCCCCCCEE
Q 007018 262 HISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVTDVAARGIDIPLLDNV 338 (621)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~-ILV~TdvaarGlDip~v~~V 338 (621)
....+.++||||.+...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++|+++++|+|+|.+++|
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~v 416 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRV 416 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEE
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEE
Confidence 7778899999999999999999999885 99999999999999999999999998 555 78999999999999999999
Q ss_pred EEcCCCCChhHHHHHhcccCCCCCccE--EEEEeccccHH
Q 007018 339 INWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSEDMA 376 (621)
Q Consensus 339 I~~d~P~s~~~~~qrvGR~gR~G~~G~--~i~~v~~~e~~ 376 (621)
|+||+|+++..|.||+||++|.|+.+. +|.|++.+.++
T Consensus 417 i~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 417 IHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp EESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred EEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 999999999999999999999998754 46677776543
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=3.5e-32 Score=320.63 Aligned_cols=313 Identities=17% Similarity=0.146 Sum_probs=216.6
Q ss_pred CChHHHHHHHHHHhc--------------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILS--------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (621)
Q Consensus 45 ~ptpiQ~~aip~il~--------------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~ 110 (621)
.|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 599999999999876 368999999999999997 6666555432 23468999999999999999
Q ss_pred HHHHHhhccCCCeEEEEEcCCChHHHHHHHh-CCCCEEEECchHHHHhHhhcCCC-CcCCcceEEEeccccccCCChHHH
Q 007018 111 KFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ 188 (621)
Q Consensus 111 ~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~-~~~~IiV~Tpgrl~~~l~~~~~~-~l~~l~~vViDEah~l~~~gf~~~ 188 (621)
+.+..++.. .+.++.+...+...+. .+++|+|+||++|..++.....+ .+....+||+||||++.. ...
T Consensus 348 ~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~ 418 (1038)
T 2w00_A 348 KEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEA 418 (1038)
T ss_dssp HHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHH
T ss_pred HHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHH
Confidence 988887643 2345555566655664 57999999999999887653222 356788999999999653 234
Q ss_pred HHHHHHhcccCCcEEEEEccCcHH--------HHH-------------HHHhcCCCCceeeecc-CCCC----CC-C---
Q 007018 189 LHKILGQLSENRQTLLFSATLPSA--------LAE-------------FAKAGLRDPHLVRLDV-DTKI----SP-D--- 238 (621)
Q Consensus 189 l~~il~~l~~~~q~ll~SATl~~~--------l~~-------------~~~~~l~~p~~i~~~~-~~~~----~~-~--- 238 (621)
...|...+| ++++++|||||... ... .+..+..-|..+.... .... .. .
T Consensus 419 ~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~ 497 (1038)
T 2w00_A 419 QKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKK 497 (1038)
T ss_dssp HHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHH
T ss_pred HHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHH
Confidence 556667776 57899999998642 111 1222222222211110 0000 00 0
Q ss_pred ---ceEEEEEcchhhHHHHHHHHHHHhc----------cCCCcEEEEecChhhHHHHHHHHHHCC------------CCc
Q 007018 239 ---LKLAFFTLRQEEKHAALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEG------------LEP 293 (621)
Q Consensus 239 ---~~~~~~~~~~~~k~~~L~~~l~~~~----------~~~~k~IVF~~t~~~ve~l~~~L~~~g------------~~~ 293 (621)
+.... .+....+...+...+..+. ..+.++||||+++.+|..++..|...+ +++
T Consensus 498 ~~~i~~~~-~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 498 LSAAENQQ-AFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHTCSTT-TTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 00000 0011223333333222211 134689999999999999999998754 455
Q ss_pred e-eecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCceEEEec
Q 007018 294 S-VCYGD----------M----------DQD-----------------------------ARKIHVSRFRARKTMFLIVT 323 (621)
Q Consensus 294 ~-~l~g~----------l----------~~~-----------------------------~R~~~l~~F~~g~~~ILV~T 323 (621)
. ++||+ + ++. .|..++++|++|+++|||+|
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvv 656 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVV 656 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEES
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEc
Confidence 4 44442 2 221 37788999999999999999
Q ss_pred CcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc----cEEEEEecc
Q 007018 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT----GTAFSFVTS 372 (621)
Q Consensus 324 dvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~----G~~i~~v~~ 372 (621)
|++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 657 d~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 657 GMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp STTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred chHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 999999999999 788999999999999999999998753 888888764
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=1.8e-28 Score=276.14 Aligned_cols=319 Identities=19% Similarity=0.224 Sum_probs=239.4
Q ss_pred CCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
+|| .|||+|..++|.++.|+ ++.++||||||++|++|++.... .|.+++|++||++||.|.++++..+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-----~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-----TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-----TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799 89999999999999998 99999999999999999964443 25679999999999999999999999999
Q ss_pred CCeEEEEEcCCChHHHHHHHhCCCCEEEECchHH-HHhHhhcC-----CCCcC---CcceEEEecccccc-CCC------
Q 007018 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLK---SVEYVVFDEADCLF-GMG------ 184 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl-~~~l~~~~-----~~~l~---~l~~vViDEah~l~-~~g------ 184 (621)
++++.+++||.+.... ....+++|+||||++| ++++...- .+.++ .+.++|+||+|+++ +.+
T Consensus 148 GLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 148 GLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp TCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 9999999999875443 3334699999999999 88887631 24577 89999999999987 221
Q ss_pred ---------hHHHHHHHHHhcccC--------------------------------------------------------
Q 007018 185 ---------FAEQLHKILGQLSEN-------------------------------------------------------- 199 (621)
Q Consensus 185 ---------f~~~l~~il~~l~~~-------------------------------------------------------- 199 (621)
....+..++..++.+
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 112233333333210
Q ss_pred -------------------------------------------------------------------------CcEEEEE
Q 007018 200 -------------------------------------------------------------------------RQTLLFS 206 (621)
Q Consensus 200 -------------------------------------------------------------------------~q~ll~S 206 (621)
..+.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 0345677
Q ss_pred ccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHH
Q 007018 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF 286 (621)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L 286 (621)
+|....-.+|...|--+ ++.+.........-....+.....+|..++..-+.+....+.++||+|.|....+.++.+|
T Consensus 386 GTA~tE~~Ef~~iY~l~--Vv~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L 463 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMD--VVVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQML 463 (997)
T ss_dssp SSCGGGHHHHHHHHCCC--EEECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCC--EEEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHH
Confidence 77766666666555332 2333222211111112233445678899999888888788999999999999999999999
Q ss_pred H----------------------------------------------------------------------------HCC
Q 007018 287 R----------------------------------------------------------------------------EEG 290 (621)
Q Consensus 287 ~----------------------------------------------------------------------------~~g 290 (621)
. +.|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (997)
T 2ipc_A 464 KEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQG 543 (997)
T ss_dssp HCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcC
Confidence 9 567
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCC-ceEEEecCcccccCCCCCC-------------------C--------------
Q 007018 291 LEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL-------------------D-------------- 336 (621)
Q Consensus 291 ~~~~~l~g~l~~~~R~~~l~~F~~g~-~~ILV~TdvaarGlDip~v-------------------~-------------- 336 (621)
++..+++......+-. ++. +.|. -.|-|||++|+||.||.-- +
T Consensus 544 I~H~VLNAK~he~EAe-IIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (997)
T 2ipc_A 544 IPHQVLNAKHHAREAE-IVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 (997)
T ss_dssp CCCCEECSSSHHHHHH-HHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTC
T ss_pred CCeeeccccchHHHHH-HHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 7777787664433222 222 2454 3699999999999999643 1
Q ss_pred -----------------------------------------EEEEcCCCCChhHHHHHhcccCCCCCccEEEEEecccc
Q 007018 337 -----------------------------------------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (621)
Q Consensus 337 -----------------------------------------~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e 374 (621)
+||....+.|...=.|--||+||.|.+|.+-.|++-+|
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 621 EEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred hhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78999999999999999999999999999988888654
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=294.64 Aligned_cols=320 Identities=17% Similarity=0.223 Sum_probs=233.4
Q ss_pred CChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+|+|.+++..++ .++++++..+||+|||+..+..+...+.... ....+||||| ..|+.||.+.+.++. .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 69999999998776 7889999999999999987766665543322 2345899999 677889888888875 3
Q ss_pred CCeEEEEEcCCChHHHHHHH------------hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHH
Q 007018 121 DLRISLLVGGDSMESQFEEL------------AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~~~~~l------------~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~ 188 (621)
++.+.+++|+.......... ...++|+|+|++.+...... +....+++|||||||++-+.+ ..
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--hH
Confidence 57777777776554443322 23578999999999866543 333468899999999996543 35
Q ss_pred HHHHHHhcccCCcEEEEEccCc----HHHHHHHHhcC-----------------------------CCCceeeeccCCCC
Q 007018 189 LHKILGQLSENRQTLLFSATLP----SALAEFAKAGL-----------------------------RDPHLVRLDVDTKI 235 (621)
Q Consensus 189 l~~il~~l~~~~q~ll~SATl~----~~l~~~~~~~l-----------------------------~~p~~i~~~~~~~~ 235 (621)
....+..++ ....+++|||+- ..+..+..... -.|.+++-......
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 555666664 445689999982 22222221110 01212211110000
Q ss_pred --CCCceEEEEEcc------------------------------------------------------------------
Q 007018 236 --SPDLKLAFFTLR------------------------------------------------------------------ 247 (621)
Q Consensus 236 --~~~~~~~~~~~~------------------------------------------------------------------ 247 (621)
.+......+.+.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 011111111110
Q ss_pred ---------hhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 007018 248 ---------QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (621)
Q Consensus 248 ---------~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ 318 (621)
...|...|..++......+.++|||+.....++.+...|...|+.+..+||+++..+|..+++.|+++...
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 12355667777777777889999999999999999999999999999999999999999999999997654
Q ss_pred ---EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCc--cEEEEEeccccH
Q 007018 319 ---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (621)
Q Consensus 319 ---ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~--G~~i~~v~~~e~ 375 (621)
+|++|++++.|||+|.+++||+||+|+++..+.||+||++|.|+. ..+|.|++.+-+
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 899999999999999999999999999999999999999999986 456778887644
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.8e-29 Score=282.30 Aligned_cols=322 Identities=16% Similarity=0.195 Sum_probs=224.8
Q ss_pred CChHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCC--CCCeEEEEEcchHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKFT 113 (621)
Q Consensus 45 ~ptpiQ~~aip~il---------~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~--~~g~~~LIL~PtreLa~Q~~~~~ 113 (621)
.|+|+|.+++..+. .++.+++..+||+|||+..+..+...+..... ....++|||||+ .|+.||.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999999874 35679999999999999988777766554321 123469999997 7889999988
Q ss_pred HHhhccCCCeEEEEEcCCChHH--HHHHHhC------CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh
Q 007018 114 KELGRYTDLRISLLVGGDSMES--QFEELAQ------NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (621)
Q Consensus 114 ~~l~~~~~l~~~~~~gg~~~~~--~~~~l~~------~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf 185 (621)
.++... .+.+..+.||..... ....+.. ..+|+|+|++.+..... .+....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 887644 466677777654322 2222211 47899999999876543 3455678999999999997654
Q ss_pred HHHHHHHHHhcccCCcEEEEEccCcHH-------HHH------------HHHhcC-------------------------
Q 007018 186 AEQLHKILGQLSENRQTLLFSATLPSA-------LAE------------FAKAGL------------------------- 221 (621)
Q Consensus 186 ~~~l~~il~~l~~~~q~ll~SATl~~~-------l~~------------~~~~~l------------------------- 221 (621)
......+..+. ....+++|||+-.. +.. |.+.+.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33444445554 45679999997221 111 111000
Q ss_pred ----CCCceeeeccC---CCCCCCceEEEEEcc-----------------------------------------------
Q 007018 222 ----RDPHLVRLDVD---TKISPDLKLAFFTLR----------------------------------------------- 247 (621)
Q Consensus 222 ----~~p~~i~~~~~---~~~~~~~~~~~~~~~----------------------------------------------- 247 (621)
-.|.+++-... ...++ .....+.+.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~-k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPV-KIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCC-EEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCC-ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 00011110000 00111 111111111
Q ss_pred -------------------------------hhhHHHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCCcee
Q 007018 248 -------------------------------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSV 295 (621)
Q Consensus 248 -------------------------------~~~k~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~ 295 (621)
...|...|..++.... ..+.++|||+.+...++.+...|...|+.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0112223333333321 24789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCce---EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCcc--EEEEEe
Q 007018 296 CYGDMDQDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFV 370 (621)
Q Consensus 296 l~g~l~~~~R~~~l~~F~~g~~~---ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G--~~i~~v 370 (621)
+||++++.+|..++++|+++... +|++|+++++|||++.+++||+||+|+++..+.|++||++|.|+.. .+|.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998764 8999999999999999999999999999999999999999999864 567777
Q ss_pred ccccH
Q 007018 371 TSEDM 375 (621)
Q Consensus 371 ~~~e~ 375 (621)
+.+.+
T Consensus 526 ~~~ti 530 (644)
T 1z3i_X 526 STGTI 530 (644)
T ss_dssp ETTSH
T ss_pred ECCCH
Confidence 77644
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=4e-28 Score=276.60 Aligned_cols=176 Identities=20% Similarity=0.211 Sum_probs=138.9
Q ss_pred cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChh
Q 007018 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (621)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~ 277 (621)
..+|+++||||+++...... . ..+............. +.......+...|+..+......+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~----~--~~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHS----G--RVVEQIIRPTGLLDPL--VRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHC----S--EEEEECSCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHhh----h--CeeeeeeccCCCCCCe--EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 46789999999986542220 1 1112111110011111 11122334566777777776667889999999999
Q ss_pred hHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC-----CCChhHHHH
Q 007018 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (621)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~-----P~s~~~~~q 352 (621)
.++.++..|...|+.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HhcccCCCCCccEEEEEeccccHHHHHHHH
Q 007018 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 353 rvGR~gR~G~~G~~i~~v~~~e~~~l~~l~ 382 (621)
|+||+||.| .|.+++|+++.+......+.
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999985 89999999998776655554
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=5.6e-27 Score=267.02 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=138.9
Q ss_pred cCCcEEEEEccCcHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChh
Q 007018 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (621)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~ 277 (621)
..+|+++||||+++...... .. .+............. +.......+...|+..+......+.++||||+|+.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p~--i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDPL--IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCCE--EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCCe--EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 46899999999986543221 11 111111110001111 11122334566777777777777889999999999
Q ss_pred hHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC-----CCChhHHHH
Q 007018 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (621)
Q Consensus 278 ~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~-----P~s~~~~~q 352 (621)
.++.++..|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhcccCCCCCccEEEEEeccccHHHHHHHH
Q 007018 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (621)
Q Consensus 353 rvGR~gR~G~~G~~i~~v~~~e~~~l~~l~ 382 (621)
|+||+||. ..|.+++|+++.+......++
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 789999999998776555443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=7.3e-27 Score=219.71 Aligned_cols=155 Identities=33% Similarity=0.509 Sum_probs=146.1
Q ss_pred CCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhc
Q 007018 235 ISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (621)
Q Consensus 235 ~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~ 314 (621)
..+++.+.++.+....|...|..++... .++++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4467899999999999999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 315 g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.|..++..++.+++.++..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776543
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=229.03 Aligned_cols=171 Identities=28% Similarity=0.436 Sum_probs=137.1
Q ss_pred HHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceee
Q 007018 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (621)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l 296 (621)
.+.++.+|..+.+........++.+.++.+....|...|..++... +.++||||+++..++.++..|...|+.+..+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 3457888988888877777789999999999999999999988753 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc-cH
Q 007018 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DM 375 (621)
Q Consensus 297 ~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~ 375 (621)
||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHhCCCCc
Q 007018 376 AYLLDLHLFLSKPIR 390 (621)
Q Consensus 376 ~~l~~l~~~l~~~~~ 390 (621)
.++..++..+.....
T Consensus 165 ~~~~~l~~~l~~~~~ 179 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQ 179 (191)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccC
Confidence 788887776654433
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.5e-26 Score=218.16 Aligned_cols=158 Identities=27% Similarity=0.424 Sum_probs=144.9
Q ss_pred CCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcC
Q 007018 236 SPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315 (621)
Q Consensus 236 ~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g 315 (621)
...+.+.|+.+....|...|..++... .+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 356889999999999999999999875 567999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccc-cHHHHHHHHHHhCCCCcCCCC
Q 007018 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 316 ~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~-e~~~l~~l~~~l~~~~~~~p~ 394 (621)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +..++..++..++.++...|.
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 160 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCCh
Confidence 9999999999999999999999999999999999999999999999999999999985 567888998888887776664
Q ss_pred H
Q 007018 395 E 395 (621)
Q Consensus 395 ~ 395 (621)
.
T Consensus 161 ~ 161 (172)
T 1t5i_A 161 E 161 (172)
T ss_dssp -
T ss_pred h
Confidence 3
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=218.03 Aligned_cols=157 Identities=27% Similarity=0.512 Sum_probs=141.1
Q ss_pred CCCCceEEEEEcchhh-HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHh
Q 007018 235 ISPDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313 (621)
Q Consensus 235 ~~~~~~~~~~~~~~~~-k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~ 313 (621)
..+++.+.|+.+.... |...|..++... .++++||||+++.+++.++..|...|+.+..+||+|++.+|..+++.|+
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3467889999998765 999998888765 5679999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEecCcccccCCCCCCCEEEEcCCC------CChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCC
Q 007018 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (621)
Q Consensus 314 ~g~~~ILV~TdvaarGlDip~v~~VI~~d~P------~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~ 387 (621)
+|+.+|||||+++++|+|+|++++||+||+| .++..|+||+||+||.|+.|.+++|+++.+..++..++..++.
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999999999999999999999998887
Q ss_pred CCcCCC
Q 007018 388 PIRAAP 393 (621)
Q Consensus 388 ~~~~~p 393 (621)
++...|
T Consensus 162 ~~~~~~ 167 (175)
T 2rb4_A 162 SIKQLN 167 (175)
T ss_dssp CCEEEC
T ss_pred cccccC
Confidence 765543
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=3.3e-26 Score=215.65 Aligned_cols=155 Identities=35% Similarity=0.581 Sum_probs=139.8
Q ss_pred CceEEEEEcchhh-HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 007018 238 DLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (621)
Q Consensus 238 ~~~~~~~~~~~~~-k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~ 316 (621)
++.+.|+.+...+ |...|..++... .++++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5778888888777 999999999875 5689999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCCCC
Q 007018 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (621)
Q Consensus 317 ~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~p~ 394 (621)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++++..++..++.+++..+...|.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887766553
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=4.2e-26 Score=219.17 Aligned_cols=161 Identities=31% Similarity=0.491 Sum_probs=131.5
Q ss_pred CCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHH
Q 007018 232 DTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311 (621)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~ 311 (621)
.....+++.+.++.+....|...|..++... ..+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.
T Consensus 13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp ---CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred cCCCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3445678999999999999999999999874 357899999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 312 F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+...+..+...+......
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888777554443
Q ss_pred CC
Q 007018 392 AP 393 (621)
Q Consensus 392 ~p 393 (621)
.|
T Consensus 172 ~~ 173 (185)
T 2jgn_A 172 VP 173 (185)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=2.4e-25 Score=218.66 Aligned_cols=159 Identities=26% Similarity=0.409 Sum_probs=143.2
Q ss_pred ceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 007018 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (621)
Q Consensus 239 ~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ 318 (621)
....++.+....|...|..++... .++++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 445667778889999999999865 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcCC--CCHH
Q 007018 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEE 396 (621)
Q Consensus 319 ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~~--p~~~ 396 (621)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++.+..++..++..++..+... |..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776543 4444
Q ss_pred HHH
Q 007018 397 EVL 399 (621)
Q Consensus 397 ~~~ 399 (621)
++.
T Consensus 164 ei~ 166 (212)
T 3eaq_A 164 EVL 166 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.7e-24 Score=223.03 Aligned_cols=159 Identities=27% Similarity=0.412 Sum_probs=142.3
Q ss_pred ceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCce
Q 007018 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (621)
Q Consensus 239 ~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ 318 (621)
+.+.++.+....|...|..++... .++++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 567888889999999999999876 478999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC--CCCHH
Q 007018 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEE 396 (621)
Q Consensus 319 ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~--~p~~~ 396 (621)
|||||+++++|+|+|++++||+||+|.++..|+||+||+||+|+.|.|++|+++.+..++..++..++..+.. .|..+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877654 34555
Q ss_pred HHH
Q 007018 397 EVL 399 (621)
Q Consensus 397 ~~~ 399 (621)
++.
T Consensus 161 ei~ 163 (300)
T 3i32_A 161 EVL 163 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=5.8e-26 Score=215.08 Aligned_cols=152 Identities=34% Similarity=0.592 Sum_probs=138.8
Q ss_pred CceEEEEEcch-hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCC
Q 007018 238 DLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (621)
Q Consensus 238 ~~~~~~~~~~~-~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~ 316 (621)
++.+.|+.+.. ..|...|..++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 45667777777 78888888888764 5678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccEEEEEeccccHHHHHHHHHHhCCCCcC
Q 007018 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (621)
Q Consensus 317 ~~ILV~TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~~i~~v~~~e~~~l~~l~~~l~~~~~~ 391 (621)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+.+..++..++.+++..+..
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 999999999999999999999999999999999999999999999999999999999998888888777665543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=4e-24 Score=209.02 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=124.4
Q ss_pred HCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcchHHHHHH-HHHHHHHhh
Q 007018 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQ-TLKFTKELG 117 (621)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~PtreLa~Q-~~~~~~~l~ 117 (621)
......|+|+|.++++.++.++++++.+|||+|||++|++++++.+.... ...+.++||++|+++|+.| +.+.++.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34555799999999999999999999999999999999999998776432 1236689999999999999 777888886
Q ss_pred ccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCC-----CCcCCcceEEEeccccccCCChHHHHH-H
Q 007018 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----MSLKSVEYVVFDEADCLFGMGFAEQLH-K 191 (621)
Q Consensus 118 ~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~-----~~l~~l~~vViDEah~l~~~gf~~~l~-~ 191 (621)
.. ++.+..+.|+......+..+..+++|+|+||+++.+.+..... ..+.++++|||||||++.+.++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6788888888766555555556799999999999988876322 567899999999999998776555543 3
Q ss_pred HHHhc-------------ccCCcEEEEEcc
Q 007018 192 ILGQL-------------SENRQTLLFSAT 208 (621)
Q Consensus 192 il~~l-------------~~~~q~ll~SAT 208 (621)
++... .+..+++++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32222 156899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=1.7e-22 Score=225.44 Aligned_cols=300 Identities=16% Similarity=0.225 Sum_probs=171.2
Q ss_pred CCCCCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 41 KGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 41 ~g~~~ptpiQ~~aip~----il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 578 799999998654 4678999999999999999999998754 568999999999999999877664
Q ss_pred hccCCCeEEEEEcCCCh--------H-H-----------------------HH---------------HHHhCCCCEEEE
Q 007018 117 GRYTDLRISLLVGGDSM--------E-S-----------------------QF---------------EELAQNPDIIIA 149 (621)
Q Consensus 117 ~~~~~l~~~~~~gg~~~--------~-~-----------------------~~---------------~~l~~~~~IiV~ 149 (621)
++++..+.|.... . . .+ +....+++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3555554443210 0 0 00 011245799999
Q ss_pred CchHHHHhHhhcCCC-------CcCCcceEEEeccccccCCC-----------h---HH---------------------
Q 007018 150 TPGRLMHHLSEVEDM-------SLKSVEYVVFDEADCLFGMG-----------F---AE--------------------- 187 (621)
Q Consensus 150 Tpgrl~~~l~~~~~~-------~l~~l~~vViDEah~l~~~g-----------f---~~--------------------- 187 (621)
|+..|++..... .+ .+....++||||||++.+.. + ..
T Consensus 151 n~~~l~~~~~~~-~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 151 TYPYLFQKPIRN-SVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp ETHHHHSHHHHH-HHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ChHHhcCHHHHH-hhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999999755431 11 24567899999999984210 0 00
Q ss_pred ------------------------------HHHHHHHh------------------------------------cccC--
Q 007018 188 ------------------------------QLHKILGQ------------------------------------LSEN-- 199 (621)
Q Consensus 188 ------------------------------~l~~il~~------------------------------------l~~~-- 199 (621)
.+..++.. .|..
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 01111000 0000
Q ss_pred ------Cc----EEEEEccCcHHHHHHHHhcCCCCce-eeeccCCCCCCCceEEEEE--cch--hh---HHHHHHHHHHH
Q 007018 200 ------RQ----TLLFSATLPSALAEFAKAGLRDPHL-VRLDVDTKISPDLKLAFFT--LRQ--EE---KHAALLYMIRE 261 (621)
Q Consensus 200 ------~q----~ll~SATl~~~l~~~~~~~l~~p~~-i~~~~~~~~~~~~~~~~~~--~~~--~~---k~~~L~~~l~~ 261 (621)
.. +|++|||+++.+ .+. ..+ ..+ .... .....+.. +.. +. ....+...+..
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~------~~~-~~f~~~~--~~~~--g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~ 378 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL------TLT-NSYKIVV--NESY--GRGEYYYCPNVTSELRKRNSNIPIYSILLKR 378 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC------CCT-TEEEEEC--CCC---CCCEEEECTTCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc------ccc-hhcCCch--hhee--cCCcceeccccCCCcccccCHHHHHHHHHHH
Confidence 12 488888887620 000 001 111 0000 01111111 100 11 11444455544
Q ss_pred hc-cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEE--ecCcccccCCCCC----
Q 007018 262 HI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI--VTDVAARGIDIPL---- 334 (621)
Q Consensus 262 ~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV--~TdvaarGlDip~---- 334 (621)
.+ ..++.+|||++|....+.++..|.. . ...++|.. ..|..+++.|+.+. .||+ +|+.+++|||+|+
T Consensus 379 ~~~~~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~ 452 (540)
T 2vl7_A 379 IYENSSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENL 452 (540)
T ss_dssp HHHTCSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------C
T ss_pred HHHhCCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCccc
Confidence 33 2467899999999999999988754 2 34556554 45778999999865 6776 8899999999997
Q ss_pred CCEEEEcCCCCC-h-----------------------------hHHHHHhcccCCCCCc-cEEEEEecc
Q 007018 335 LDNVINWDFPPK-P-----------------------------KIFVHRVGRAARAGRT-GTAFSFVTS 372 (621)
Q Consensus 335 v~~VI~~d~P~s-~-----------------------------~~~~qrvGR~gR~G~~-G~~i~~v~~ 372 (621)
+++||++++|.. + ..+.|.+||+-|.... |. ++++.+
T Consensus 453 ~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 453 FESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp EEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred ccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 889999999832 1 1246999999997544 54 444444
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=205.44 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=133.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHH
Q 007018 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (621)
Q Consensus 33 ~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~ 112 (621)
.+.+.....+...++++|.++++.+..|+++++.|+||||||+++.+++++.+.......+.++++++|+++|+.|+.+.
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 33333333444468999999999999999999999999999999999999877654333356899999999999999886
Q ss_pred HHH-hhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccc-cCCChH-HHH
Q 007018 113 TKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQL 189 (621)
Q Consensus 113 ~~~-l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l-~~~gf~-~~l 189 (621)
+.. ++...+..+..-...... ....+++|+|+|||++++++.. .++++++|||||||++ ++++|. ..+
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHH
Confidence 654 343344444433322110 0124588999999999999875 3889999999999986 677777 456
Q ss_pred HHHHHhcccCCcEEEEEccCcHHHHHHHHhcCCCC
Q 007018 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224 (621)
Q Consensus 190 ~~il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p 224 (621)
..++... +++|+++||||++... +++.+...|
T Consensus 200 ~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 200 RDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 6666655 4789999999999775 555554444
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=8.9e-21 Score=212.21 Aligned_cols=312 Identities=18% Similarity=0.141 Sum_probs=202.0
Q ss_pred CCCCChHHHHHHHHH----HhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 42 GYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 42 g~~~ptpiQ~~aip~----il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
|| .|+|.|.+.+.. +..|+++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 56 599999997764 4578999999999999999999999972 5689999999999999999999988
Q ss_pred ccCCCeEEEEEcCCCh---------------------------------HHHH------------------HHHhCCCCE
Q 007018 118 RYTDLRISLLVGGDSM---------------------------------ESQF------------------EELAQNPDI 146 (621)
Q Consensus 118 ~~~~l~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~~I 146 (621)
+..++++..+.|+..+ ...+ +....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774322 1111 223457899
Q ss_pred EEECchHHHHhHhhcCCCCc-CCcceEEEeccccccCCC-----------------------------------------
Q 007018 147 IIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMG----------------------------------------- 184 (621)
Q Consensus 147 iV~Tpgrl~~~l~~~~~~~l-~~l~~vViDEah~l~~~g----------------------------------------- 184 (621)
||+||+.|++...+. .+.+ ....+|||||||++.+ .
T Consensus 152 VV~~~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 152 IALTYPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEETHHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEeCchHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999886542 2332 4677899999998765 1
Q ss_pred --------------hHHHHH----------------------------HHHH----------------------------
Q 007018 185 --------------FAEQLH----------------------------KILG---------------------------- 194 (621)
Q Consensus 185 --------------f~~~l~----------------------------~il~---------------------------- 194 (621)
+...+. .++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 000000 0000
Q ss_pred hcccC-CcEEEEEccCcHHHHHHHHhcCCC-Ccee---eeccCCCCCCCceEEEEE--cch------hhHHHHHHHHHHH
Q 007018 195 QLSEN-RQTLLFSATLPSALAEFAKAGLRD-PHLV---RLDVDTKISPDLKLAFFT--LRQ------EEKHAALLYMIRE 261 (621)
Q Consensus 195 ~l~~~-~q~ll~SATl~~~l~~~~~~~l~~-p~~i---~~~~~~~~~~~~~~~~~~--~~~------~~k~~~L~~~l~~ 261 (621)
.+... +.+|++|||+.+ +..+....--+ +... .+...... ..-...++. ++. ..-...+...+.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01123 789999999986 44444442222 2210 22223333 211122221 111 1123455555554
Q ss_pred hcc-CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec--CcccccCCCC-----
Q 007018 262 HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT--DVAARGIDIP----- 333 (621)
Q Consensus 262 ~~~-~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T--dvaarGlDip----- 333 (621)
.+. .++.++||+++....+.++. ..+..+..-..+++. ...++.|+...-.||++| .....|||+|
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 332 46789999999999998886 234333332234453 446777854445899998 6899999999
Q ss_pred CCCEEEEcCCCCC--------------------hh----------HHHHHhcccCCCCCccEEEEEecc
Q 007018 334 LLDNVINWDFPPK--------------------PK----------IFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 334 ~v~~VI~~d~P~s--------------------~~----------~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
.+..||...+|.. .- .+.|-+||+-|....--+++++.+
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4788998887631 11 125888999987554334444444
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=5.4e-22 Score=203.17 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=128.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeE
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (621)
.|+|+|.++++.++.+++.++.++||||||++++.++...+.. .+.++|||+||++|+.|+.+.+++++......+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 7999999999999999899999999999999999888877654 234799999999999999999999987777788
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEE
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll 204 (621)
..+.||..... ....+.+|+|+||+++.... ...+.++++||+||||++.. ..+..++..+...+++++
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 88888865432 22356899999999886432 23467899999999999874 477888888878999999
Q ss_pred EEccCcHHH
Q 007018 205 FSATLPSAL 213 (621)
Q Consensus 205 ~SATl~~~l 213 (621)
+|||+++..
T Consensus 258 lSATp~~~~ 266 (282)
T 1rif_A 258 LSGSLRDGK 266 (282)
T ss_dssp ECSSCCTTS
T ss_pred EeCCCCCcc
Confidence 999997653
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.2e-18 Score=173.79 Aligned_cols=138 Identities=19% Similarity=0.145 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCe-
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~- 123 (621)
.|+|+|.++++.++.+++++++++||+|||.+++.++... +.++||++|+++|+.|+.+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 6999999999999999999999999999999998776642 457999999999999998877764 567
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEE
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~l 203 (621)
+..+.|+.. ...+|+|+||+.+....... ...+++|||||||++.+..+.. ++..++ ..+++
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~----i~~~~~-~~~~l 222 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRL 222 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH----HHHTCC-CSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH----HHHhcc-CCEEE
Confidence 777776653 36899999999998766532 2468999999999998876543 445554 67899
Q ss_pred EEEccCcHH
Q 007018 204 LFSATLPSA 212 (621)
Q Consensus 204 l~SATl~~~ 212 (621)
++|||++..
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999998753
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=1e-17 Score=189.19 Aligned_cols=316 Identities=18% Similarity=0.220 Sum_probs=192.1
Q ss_pred CChHHHHHHHH----HHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip----~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+|.|++.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 48999998875 456899999999999999999999999988753 6789999999999999999999988777
Q ss_pred CCeEEEEEcCCChHH------------------HH---------------------------------------------
Q 007018 121 DLRISLLVGGDSMES------------------QF--------------------------------------------- 137 (621)
Q Consensus 121 ~l~~~~~~gg~~~~~------------------~~--------------------------------------------- 137 (621)
++++..+.|+.++-- ..
T Consensus 79 ~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~ 158 (620)
T 4a15_A 79 KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYG 158 (620)
T ss_dssp CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHH
T ss_pred CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHh
Confidence 788777776532100 00
Q ss_pred -----------HHHhCCCCEEEECchHHHHhHhhcC---CC-CcCCcceEEEeccccccCC-------------------
Q 007018 138 -----------EELAQNPDIIIATPGRLMHHLSEVE---DM-SLKSVEYVVFDEADCLFGM------------------- 183 (621)
Q Consensus 138 -----------~~l~~~~~IiV~Tpgrl~~~l~~~~---~~-~l~~l~~vViDEah~l~~~------------------- 183 (621)
+.....+||||+.+..|++-..+.. .+ ....-.+|||||||.+.+.
T Consensus 159 ~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~ 238 (620)
T 4a15_A 159 ERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADR 238 (620)
T ss_dssp HHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHH
T ss_pred hhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHH
Confidence 1112247899999987765443211 01 1234468999999977310
Q ss_pred -------Ch----------HHH----HH-----------------------------------HH-------HH------
Q 007018 184 -------GF----------AEQ----LH-----------------------------------KI-------LG------ 194 (621)
Q Consensus 184 -------gf----------~~~----l~-----------------------------------~i-------l~------ 194 (621)
.+ ... +. .+ ..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 318 (620)
T 4a15_A 239 EAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK 318 (620)
T ss_dssp HHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 000 00 00 00
Q ss_pred -------------------hc---c------------------------------cCCcEEEEEccCcHHHHHHHHh-cC
Q 007018 195 -------------------QL---S------------------------------ENRQTLLFSATLPSALAEFAKA-GL 221 (621)
Q Consensus 195 -------------------~l---~------------------------------~~~q~ll~SATl~~~l~~~~~~-~l 221 (621)
.+ . ..+.+|++|||+.+ +..+... ++
T Consensus 319 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 319 EKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred cccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 00 0 01245899999986 4444443 44
Q ss_pred CCCceeeeccCCCCCCCceEEEEE--cc------hhhHHHHHHHHHHHhc-cCCCcEEEEecChhhHHHHHHHHHHCCCC
Q 007018 222 RDPHLVRLDVDTKISPDLKLAFFT--LR------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE 292 (621)
Q Consensus 222 ~~p~~i~~~~~~~~~~~~~~~~~~--~~------~~~k~~~L~~~l~~~~-~~~~k~IVF~~t~~~ve~l~~~L~~~g~~ 292 (621)
. +.. +.........-...++. +. ...-...+...+...+ ..++.++||++|....+.++..|.. +.
T Consensus 398 ~-~~~--~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~--~~ 472 (620)
T 4a15_A 398 E-IPF--KKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF--EH 472 (620)
T ss_dssp C-CCE--EECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS--CC
T ss_pred C-cee--eecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh--cc
Confidence 3 322 33232222211112211 11 1111233444444333 2367799999999999999887762 22
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCceEEEecC--cccccCCCCC--CCEEEEcCCCCC-------------------h--
Q 007018 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNVINWDFPPK-------------------P-- 347 (621)
Q Consensus 293 ~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td--vaarGlDip~--v~~VI~~d~P~s-------------------~-- 347 (621)
.. ...+++...+...+++|+ ++-.||++|. ..+.|||+|+ +.+||...+|.. .
T Consensus 473 ~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~ 550 (620)
T 4a15_A 473 MK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWE 550 (620)
T ss_dssp EE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHH
T ss_pred hh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCch
Confidence 22 334455668889999999 8889999985 8999999995 678998888732 1
Q ss_pred --------hHHHHHhcccCCCCCccEEEEEecc
Q 007018 348 --------KIFVHRVGRAARAGRTGTAFSFVTS 372 (621)
Q Consensus 348 --------~~~~qrvGR~gR~G~~G~~i~~v~~ 372 (621)
..+.|-+||+-|.-..--+++++.+
T Consensus 551 ~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 551 YSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp HHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred HHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 1136999999997554334444443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=3e-18 Score=174.12 Aligned_cols=130 Identities=18% Similarity=0.318 Sum_probs=104.9
Q ss_pred cchhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC-CCCceeecCCCCHHHHHHHHHHHhcC-Cce-EEEe
Q 007018 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIV 322 (621)
Q Consensus 246 ~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~-g~~~~~l~g~l~~~~R~~~l~~F~~g-~~~-ILV~ 322 (621)
+....|...|..++......+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ ... +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567999999999988778899999999999999999999885 99999999999999999999999999 676 7889
Q ss_pred cCcccccCCCCCCCEEEEcCCCCChhHHHHHhcccCCCCCccE--EEEEeccccH
Q 007018 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT--AFSFVTSEDM 375 (621)
Q Consensus 323 TdvaarGlDip~v~~VI~~d~P~s~~~~~qrvGR~gR~G~~G~--~i~~v~~~e~ 375 (621)
|+++++|+|++.+++||+||+|+++..|.||+||++|.|+.+. +|.|++.+.+
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999999999999999999999999998764 4777777644
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.88 E-value=5.4e-09 Score=117.81 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHhcCCcEEEEcCCCchHH--HHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeE
Q 007018 47 TPIQRKTMPLILSGADVVAMARTGSGKT--AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (621)
Q Consensus 47 tpiQ~~aip~il~g~dvv~~a~TGSGKT--~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~ 124 (621)
++.|+.+++.++.++.+++.|++||||| ++++++++..+.. ..+.++++++||.++|.++.+.+...+...++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 7899999999999999999999999999 7778777766532 2467899999999999999887776654443321
Q ss_pred EEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEE
Q 007018 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (621)
Q Consensus 125 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll 204 (621)
... .+.. .+...+ ..++-.+|+... +... ......+++||||||+.+ + ...+..++..++..+|+++
T Consensus 228 ~~~-~~~~--~~~~Ti---h~ll~~~~~~~~--~~~~-~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 228 EQK-KRIP--EDASTL---HRLLGAQPGSQR--LRHH-AGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp CCC-CSCS--CCCBTT---TSCC-------------C-TTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEE
T ss_pred HHH-hccc--hhhhhh---HhhhccCCCchH--HHhc-cCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEE
Confidence 100 0000 000000 011112232210 1111 112237899999999954 3 4677888999999999998
Q ss_pred EEcc
Q 007018 205 FSAT 208 (621)
Q Consensus 205 ~SAT 208 (621)
+.=.
T Consensus 295 vGD~ 298 (608)
T 1w36_D 295 LGDR 298 (608)
T ss_dssp EECT
T ss_pred Ecch
Confidence 8654
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.07 E-value=0.00029 Score=79.68 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
..+++.|++++. .....+++.|+.|||||.+.+--+...+.... ....++|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 468999999997 23567999999999999886655555554321 224579999999999999998777653
No 96
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.03 E-value=0.00031 Score=81.21 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
...+++.|.+|+..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346899999999999988888999999999998744 344444432 3668999999999999988776554
No 97
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=1.8e-05 Score=88.28 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=82.3
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~ 121 (621)
++ .+++.|+.++..++.++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+.
T Consensus 187 ~~-~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~~~------- 253 (574)
T 3e1s_A 187 RK-GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGEVTG------- 253 (574)
T ss_dssp TT-TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHT-------
T ss_pred cC-CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHhhhc-------
Confidence 44 489999999999999999999999999999763 344444443 36789999999998887655331
Q ss_pred CeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHh----HhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcc
Q 007018 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHH----LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (621)
Q Consensus 122 l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~----l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~ 197 (621)
.... |-.+++.. ... .......+++||||||+.+. ...+..++..++
T Consensus 254 ~~a~------------------------Tih~ll~~~~~~~~~-~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 254 RTAS------------------------TVHRLLGYGPQGFRH-NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp SCEE------------------------EHHHHTTEETTEESC-SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred ccHH------------------------HHHHHHcCCcchhhh-hhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 1111 11111100 000 11223467899999999764 346777788888
Q ss_pred cCCcEEEEE
Q 007018 198 ENRQTLLFS 206 (621)
Q Consensus 198 ~~~q~ll~S 206 (621)
...+++++.
T Consensus 305 ~~~~lilvG 313 (574)
T 3e1s_A 305 PGARVLLVG 313 (574)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 777776654
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.02 E-value=2.5e-05 Score=84.86 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=80.9
Q ss_pred HHCCCCCChHHHHHHHHHHhcC----C-cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHH
Q 007018 39 KRKGYKVPTPIQRKTMPLILSG----A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (621)
Q Consensus 39 ~~~g~~~ptpiQ~~aip~il~g----~-dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~ 113 (621)
.-+.|..+++-|++++..++.. + .+++.|+.|||||.+. ..++..|... ....+++++||...|..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHhhh
Confidence 4478999999999999977643 3 8999999999999754 4455555442 1236999999998887655433
Q ss_pred HHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHH
Q 007018 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (621)
Q Consensus 114 ~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il 193 (621)
++.+..++ .. + . +-..+.+... .+.......+..+++|||||++.+. ...+..++
T Consensus 95 -------~~~~~T~h------~~---~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~ 149 (459)
T 3upu_A 95 -------GKEASTIH------SI---L-K---INPVTYEENV-LFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILL 149 (459)
T ss_dssp -------SSCEEEHH------HH---H-T---EEEEECSSCE-EEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHH
T ss_pred -------ccchhhHH------HH---h-c---cCcccccccc-hhcccccccccCCCEEEEECchhCC----HHHHHHHH
Confidence 11111111 00 0 0 0000000000 0000012345678999999999753 34566666
Q ss_pred HhcccCCcEEEEE
Q 007018 194 GQLSENRQTLLFS 206 (621)
Q Consensus 194 ~~l~~~~q~ll~S 206 (621)
..++...+++++.
T Consensus 150 ~~~~~~~~~~~vG 162 (459)
T 3upu_A 150 STIPPWCTIIGIG 162 (459)
T ss_dssp HHSCTTCEEEEEE
T ss_pred HhccCCCEEEEEC
Confidence 6666555555544
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.94 E-value=6e-05 Score=85.09 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
+..+++.|..|+..++.+.-+++.||+|+|||.+..- ++..+... .+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999999888899999999999987543 33444331 3668999999999999988776654
No 100
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.93 E-value=2.5e-05 Score=88.54 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHhcCCc-EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~d-vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
.+.+-|.+|+..++..++ .++.||.|||||.+..-.+.+.+. .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999999998776 678999999999875544444433 3678999999999999988776554
No 101
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=7.9e-05 Score=86.25 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
+..+++.|.+|+..++.+.-+++.||.|||||.+..-. +..+... .+.++|+++||...+.++.+.+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999998777899999999999875433 3333321 2568999999999999998877765
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.39 E-value=0.0011 Score=67.78 Aligned_cols=125 Identities=12% Similarity=0.065 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc
Q 007018 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (621)
Q Consensus 248 ~~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa 327 (621)
...|+..|-.++......+.+++||+......+.+..+|...++....+.|.....+++ -.+..+.|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 45688888888888888899999999999999999999999999999999985543322 1245566666677666
Q ss_pred ccCC-----CCCCCEEEEcCCCCChhH-HHHHhcccCCCC----CccEEEEEeccccHHH
Q 007018 328 RGID-----IPLLDNVINWDFPPKPKI-FVHRVGRAARAG----RTGTAFSFVTSEDMAY 377 (621)
Q Consensus 328 rGlD-----ip~v~~VI~~d~P~s~~~-~~qrvGR~gR~G----~~G~~i~~v~~~e~~~ 377 (621)
-|+| ....|.||.||.-+++.. .+|.+-|+.|.| +.-.+|-+++..-++.
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 6776 567899999999999988 489888888873 3467899998876654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.93 E-value=0.0074 Score=63.50 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhc
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~ 118 (621)
.|+|+|+..+..+-..+-+++..+-+.|||.+....++..+.. ..+..+++++||+.-|..+++.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5899999999877556778999999999998877666654433 2467899999999999888877766544
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.85 E-value=0.0076 Score=55.99 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHh---------cCCcEEEEcCCCchHHHHHH
Q 007018 47 TPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 47 tpiQ~~aip~il---------~g~dvv~~a~TGSGKT~afl 78 (621)
.+.|.+++..+. .|+.+++.||+|+|||....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 456666665543 46789999999999997544
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.67 E-value=0.0052 Score=68.71 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccC
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~ 120 (621)
.|+|+|+..+..+-..+.+++..+-|+|||.+....++..+... .+..++++.|++..|..++..++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998775567899999999999988765555555432 36689999999999999988777765543
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.51 E-value=0.0088 Score=56.21 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=27.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
.|+=.++.|++|+|||...+-.+. ++.. .|.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~-~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE-IYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH-HHHH----TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH-HHHH----CCCeEEEEeecc
Confidence 356678999999999987653333 3322 366899998873
No 107
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.20 E-value=0.0055 Score=65.40 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~ 142 (621)
.++.|+.|+|||..+. .+.. ..+.+|++||++++..+.+.+...+. ..
T Consensus 164 ~~I~G~aGsGKTt~I~-----~~~~-----~~~~lVlTpT~~aa~~l~~kl~~~~~----------------------~~ 211 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL-----SRVN-----FEEDLILVPGRQAAEMIRRRANASGI----------------------IV 211 (446)
T ss_dssp EEEEECTTSCHHHHHH-----HHCC-----TTTCEEEESCHHHHHHHHHHHTTTSC----------------------CC
T ss_pred EEEEcCCCCCHHHHHH-----HHhc-----cCCeEEEeCCHHHHHHHHHHhhhcCc----------------------cc
Confidence 6789999999998654 2221 12469999999999887765532210 01
Q ss_pred CCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 143 ~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
....-|.|-++++- +......-..++||||||-. .+.+ .+..++...+. .+++++.=+
T Consensus 212 ~~~~~V~T~dsfL~---~~~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM---NYGKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHH---TTTSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhc---CCCCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 12234667666542 11122223478999999974 3443 33344444443 555555444
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.15 E-value=0.008 Score=56.94 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
|+=.++.|++|||||.+.+-. +.++.. .|.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~-a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRR-IRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHH-HHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHH-HHHHHH----CCCEEEEEEecc
Confidence 455788999999999875533 334332 477899999873
No 109
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.14 E-value=0.0028 Score=61.63 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=53.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.|.-+++.|++|+|||.+.+-.+. ++.. .|.+++++.|...-. ....+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~-r~~~----~g~kVli~~~~~d~r-----~~~~i~srlG~~--------------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH-RLEY----ADVKYLVFKPKIDTR-----SIRNIQSRTGTS--------------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCCGG-----GCSSCCCCCCCS---------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEEeccCch-----HHHHHHHhcCCC---------------
Confidence 355688899999999987554433 4333 367789988754200 000111111211
Q ss_pred HHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc
Q 007018 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 139 ~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
-..+.+.+...++..+.. ...-..+++|||||++.+.
T Consensus 66 ----~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSC
T ss_pred ----ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCc
Confidence 012345566667766654 2333568999999999743
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.10 E-value=0.0034 Score=56.89 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=25.6
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhccc-CCcEEEEEccC
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATL 209 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~-~~q~ll~SATl 209 (621)
+.+++|+||.+.+.... ...+..++..+.. +..+++++...
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46899999999855433 5566666665543 34424555553
No 111
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.98 E-value=0.029 Score=59.90 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=71.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc--chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~--PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
-+++.|++|+|||......+. .+.. .|.+++++. +.|.-+. +.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC-------
Confidence 377899999999986553332 3333 355666655 3333222 2344444444554332222211
Q ss_pred HhCCCCEEEECchHHH-HhHhhcCCCCcCCcceEEEecccccc---CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHH
Q 007018 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF---GMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~-~~l~~~~~~~l~~l~~vViDEah~l~---~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
|..+. ..+. .+....+++||+|++-++. +..+..++..+...+.+..-+++++|+.......
T Consensus 164 -----------p~~i~~~al~---~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~ 229 (433)
T 3kl4_A 164 -----------PIEIAKKGVD---IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229 (433)
T ss_dssp -----------HHHHHHHHHH---HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH
T ss_pred -----------HHHHHHHHHH---HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH
Confidence 21111 1222 2334578999999998754 4456677777777776666677888886544444
Q ss_pred HH
Q 007018 216 FA 217 (621)
Q Consensus 216 ~~ 217 (621)
.+
T Consensus 230 ~a 231 (433)
T 3kl4_A 230 LA 231 (433)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.85 E-value=0.011 Score=56.90 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
|+=.++.|++|||||.+.+-.+. +... .|.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~-r~~~----~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVR-RTQF----AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHH-HHHH----CCCEEEEEEeccC
Confidence 34467899999999987654443 3332 3778999999753
No 113
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.50 E-value=0.017 Score=65.59 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhh
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~ 117 (621)
.++|-|++++.. .+..+++.|..|||||.+.+--+...+..... ...++|+|+.|+..|.++.+.+....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999999875 36789999999999998866556555544221 24579999999999999998777653
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.14 Score=52.30 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=20.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhh
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~ 87 (621)
+..+++.||+|+|||++.- .++..|..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 4679999999999998643 44555544
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.24 E-value=0.085 Score=53.77 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
+..+++.||+|+|||...- .+...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~----~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR----GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT----TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC----CCEEEEEEH
Confidence 3579999999999997543 333333321 444555544
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.99 E-value=0.11 Score=51.58 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
..+++.||+|+|||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998644
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.94 E-value=0.19 Score=47.17 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.|++|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 118
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.90 E-value=0.046 Score=58.44 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=66.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc--chHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~--PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~ 139 (621)
-+++.|++|+|||....-.+. .+.. .|.+++++. |.|.-+. +.++.++...++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~----~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~d------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQK----RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKD------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT----TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCC-------
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHH----CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCC-------
Confidence 377899999999987553332 3332 366676665 3443332 3444555555555433222221
Q ss_pred HhCCCCEEEECchHHH-HhHhhcCCCCcCCcceEEEeccccccC-CChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHH
Q 007018 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (621)
Q Consensus 140 l~~~~~IiV~Tpgrl~-~~l~~~~~~~l~~l~~vViDEah~l~~-~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~ 217 (621)
|..+. +.+.. +....+++||||.+=++.. ......+..+.....+..-+++++||........+
T Consensus 167 -----------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a 232 (443)
T 3dm5_A 167 -----------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA 232 (443)
T ss_dssp -----------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH
T ss_pred -----------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH
Confidence 21111 11211 1123578899998865432 22344555555555555556777777654443333
No 119
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.84 E-value=0.035 Score=67.42 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
.+|+-|.++|.. .++++++.|..|||||.+.+--++..+.... .....++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 589999999975 3889999999999999987766776665432 12345799999999999998886655
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.83 E-value=0.048 Score=52.92 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
.|+=.++.|++|||||.+.+--+... .. .|.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~----~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QI----AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HT----TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH----CCCeEEEEeecC
Confidence 35668889999999998766443333 22 478899998865
No 121
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.82 E-value=0.047 Score=62.43 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHh
Q 007018 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (621)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l 116 (621)
..++|-|++++.. ....+++.|..|||||.+..--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999875 3567999999999999886655555554321 12357999999999999988877665
No 122
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.67 E-value=0.19 Score=53.73 Aligned_cols=41 Identities=22% Similarity=0.478 Sum_probs=25.1
Q ss_pred CcceEEEeccccccCC-ChHHHHHHHHHhcc-cCCcEEEEEcc
Q 007018 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSAT 208 (621)
Q Consensus 168 ~l~~vViDEah~l~~~-gf~~~l~~il~~l~-~~~q~ll~SAT 208 (621)
..++|+|||+|.+... .....+..++..+. .+.++++.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999998764 23445555555443 34555554433
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.53 E-value=0.024 Score=56.55 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHH-HHHHHH--HhcCCcEEEEcCCCchHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPL--ILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ-~~aip~--il~g~dvv~~a~TGSGKT~af 77 (621)
...-.|+++.-.+...+.|...-. .|.+ .+.+.. +..++.+++.||+|+|||...
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 445679999877777777765310 1111 111111 124577999999999999754
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.53 E-value=0.053 Score=60.74 Aligned_cols=112 Identities=23% Similarity=0.383 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHhc--CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 45 VPTPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 45 ~ptpiQ~~aip~il~--g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
.+|+-|++++..++. ..-.++.|+-|.|||.+.-+.+. .+.. .++|.+|+.+-+..+.++..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~~-------~~~vtAP~~~a~~~l~~~~~~------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIAG-------RAIVTAPAKASTDVLAQFAGE------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSSS-------CEEEECSSCCSCHHHHHHHGG-------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHHh-------CcEEECCCHHHHHHHHHHhhC-------
Confidence 689999999998886 33478999999999966544433 3321 369999998866544333211
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHhcccCCcE
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ 202 (621)
.|-+..|..+.. .+...++||||||=.+- ...+..++... ..
T Consensus 240 ----------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLVSRF----PR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SE
T ss_pred ----------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHHhhC----Ce
Confidence 133345655431 13358899999996542 34555555532 35
Q ss_pred EEEEccC
Q 007018 203 LLFSATL 209 (621)
Q Consensus 203 ll~SATl 209 (621)
++||.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 8888886
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.48 E-value=0.14 Score=45.56 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (621)
..+..+++.|++|+|||...-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999997543
No 126
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.43 E-value=0.099 Score=60.10 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv 325 (621)
.|....+..+...+..+.+++|.++|+.-+..++..+.. .++.+..+||+++..++..++..+.+|+.+|+|+|..
T Consensus 401 GKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ 480 (780)
T 1gm5_A 401 GKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA 480 (780)
T ss_dssp SHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 344433333333344578999999999888777766654 3789999999999999999999999999999999964
Q ss_pred -ccccCCCCCCCEEEEcCC
Q 007018 326 -AARGIDIPLLDNVINWDF 343 (621)
Q Consensus 326 -aarGlDip~v~~VI~~d~ 343 (621)
+...+++.++++||.-..
T Consensus 481 ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 481 LIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp HHHHCCCCSCCCEEEEESC
T ss_pred HHhhhhhccCCceEEeccc
Confidence 455678889999885444
No 127
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.37 E-value=0.17 Score=51.45 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=25.7
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...+|||||+|.+........+..++...+...++++.+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 678999999999862234455666666655566555533
No 128
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.31 E-value=0.17 Score=46.06 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.16 E-value=0.14 Score=49.05 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.++.+++.||+|+|||...-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997543
No 130
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.15 E-value=0.17 Score=46.16 Aligned_cols=19 Identities=32% Similarity=0.379 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.|++|+|||...-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997643
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.14 E-value=0.14 Score=52.07 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
++.+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997644
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.11 E-value=0.21 Score=51.81 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.09 E-value=0.063 Score=54.13 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
..+++.||+|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 134
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.99 E-value=0.07 Score=51.19 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
|.=.++.|++|||||...+-- +.+... .+.+++|+-|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~----~g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY----AKQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH----TTCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH----cCCceEEEEeccC
Confidence 455788999999999765433 444443 3677999999653
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.97 E-value=0.18 Score=52.21 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+..+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.97 E-value=0.29 Score=49.81 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=34.1
Q ss_pred cCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCchHHHHHH
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il-----~g~dvv~~a~TGSGKT~afl 78 (621)
+...-+|++++-.+.+.+.|...=. .|. ..|.+. ..+.+++.||+|+|||...-
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3445679999878888888765310 111 111111 13569999999999997643
No 137
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.95 E-value=0.05 Score=51.41 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.|+=.++.|++|||||.-.+ -.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll-~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELM-RRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHHHHHH----TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHH-HHHHHHHH----cCCeEEEEccc
Confidence 35668899999999996544 33333332 36789999887
No 138
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.83 E-value=0.63 Score=43.85 Aligned_cols=135 Identities=12% Similarity=0.166 Sum_probs=77.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH-HHHHHHHHHHHhhccCCCeEEEEEcCCC-------
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDS------- 132 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre-La~Q~~~~~~~l~~~~~l~~~~~~gg~~------- 132 (621)
-.+++...+|.|||.+++-.++..+.. |.+++|+.-... ....=.+.+..+ ++.+. ..|..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-----G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~--~~g~gf~~~~~~ 97 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-----GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQ--VMATGFTWETQN 97 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-----TCCEEEEESSCCSSCCHHHHHHGGG----TCEEE--ECCTTCCCCGGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEeeCCCCCccHHHHHHhC----CcEEE--EcccccccCCCC
Confidence 468899999999999988887766653 778888832110 000000122223 12211 11111
Q ss_pred hHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCCh--HHHHHHHHHhcccCCcEEEEEccCc
Q 007018 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 133 ~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf--~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
.+...... ...+....+ .+.-..+++||+||.-.....++ .+.+.+++...|...-+|+.+--.|
T Consensus 98 ~~~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 98 READTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred cHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 01110000 111222222 13336789999999976544432 4567777888888888888888888
Q ss_pred HHHHHHHHh
Q 007018 211 SALAEFAKA 219 (621)
Q Consensus 211 ~~l~~~~~~ 219 (621)
+.+.+.+..
T Consensus 165 ~~l~e~AD~ 173 (196)
T 1g5t_A 165 RDILDLADT 173 (196)
T ss_dssp HHHHHHCSE
T ss_pred HHHHHhCcc
Confidence 888887653
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.74 E-value=0.33 Score=49.79 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
.+.+++|+||+|. ++......+..++...+.+..+++.|-.+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4677999999999 44445566777777766665555555443
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.53 E-value=0.46 Score=44.38 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
....+|||||+|.+... ....+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997542 3445555555555455444444
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.42 E-value=0.17 Score=52.50 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998643
No 142
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.14 E-value=0.2 Score=51.39 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHh----cCC---cEEEEcCCCchHHHHHHH
Q 007018 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 46 ptpiQ~~aip~il----~g~---dvv~~a~TGSGKT~afll 79 (621)
+.|+|..++..+. .|+ -+++.||.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777766554 343 389999999999986553
No 143
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.13 E-value=0.62 Score=47.90 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+..+++.|++|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.95 E-value=0.94 Score=46.00 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=29.3
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afl 78 (621)
...+|+++--.+.+.+.+.. .+.... ....+++.|++|+|||...-
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 34578887666666665532 122221 12579999999999998543
No 145
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.88 E-value=0.43 Score=50.82 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=37.3
Q ss_pred cCCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
++..-+|+++|--+.+.+.|.+. -+..|.-++...+ -.-+.+++.||+|+|||+..-
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHH
Confidence 34566899999888888887653 1222333332221 124789999999999998543
No 146
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.55 E-value=0.37 Score=50.60 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=66.0
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCccc----ccCCCCCC
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA----RGIDIPLL 335 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdvaa----rGlDip~v 335 (621)
...+.++||.++|+.-+..++..+.. .++.+..++|+.+..++...+..+..++.+|+|+|+-.- .-++...+
T Consensus 61 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 61 ARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp HTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred hcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccc
Confidence 35678999999999999999999988 588999999999999888888999999999999995321 12556678
Q ss_pred CEEEEcC
Q 007018 336 DNVINWD 342 (621)
Q Consensus 336 ~~VI~~d 342 (621)
++||.-.
T Consensus 141 ~~iViDE 147 (414)
T 3oiy_A 141 DFVFVDD 147 (414)
T ss_dssp SEEEESC
T ss_pred cEEEEeC
Confidence 8888543
No 147
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.51 E-value=0.91 Score=47.42 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
.+.+++.|++|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997543
No 148
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.45 E-value=0.8 Score=46.61 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----cCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il-----~g~dvv~~a~TGSGKT~afl 78 (621)
..-+|++++=.+.+.+.|.+.= -.|.+ .|.+. ..+.+++.||+|+|||...-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 4568999987777777775420 00110 01121 22679999999999997543
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.33 Score=46.69 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=30.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
.|.-+++.|++|+|||...+-.+...+. .+.+++++.-.. -..++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEccC-CHHHHHHHHHH
Confidence 4567899999999999865544443332 244577776432 23444444443
No 150
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.39 E-value=0.32 Score=52.05 Aligned_cols=39 Identities=31% Similarity=0.204 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.-+++.|++|+|||...+-.+...... .|..+++++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE 238 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLE 238 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 3458899999999997555444433322 25568888764
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.37 E-value=0.37 Score=51.67 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.-+++.|++|+|||...+-.+...... .|..+++++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4568899999999997655444433322 25568888753
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.28 E-value=0.64 Score=46.30 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-hcCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI-LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~-~aip~i-l~g~dvv~~a~TGSGKT~afl 78 (621)
....|+++.=.+.+.+.|...-. .|... +.+..+ ..++.+++.||+|+|||...-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 45688888777777777654210 00000 000001 135789999999999998543
No 153
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.04 E-value=0.79 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.230 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp 80 (621)
.|.-+++.|++|+|||......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 3567889999999999754433
No 154
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.84 E-value=0.53 Score=47.39 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHH-HHH-HH-HhcCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTM-PL-ILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~-~ai-p~-il~g~dvv~~a~TGSGKT~afl 78 (621)
..-+|++++-.+.+.+.|...- -.|... +.+ .. +..++.+++.||+|+|||...-
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 3567888877777777765420 011110 011 11 1245779999999999998543
No 155
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=1.4 Score=46.35 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
...-+|+++|=-+...+.|.+. -+..|--++... +-.-+.+++.||+|+|||+.+-
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHHH
Confidence 3456899998666777777653 111222222211 1123789999999999998543
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.49 E-value=0.64 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
.+.+++.||+|+|||...-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999998544
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.38 E-value=0.43 Score=49.41 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 579999999999998644
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.15 E-value=1.2 Score=41.96 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 159
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.09 E-value=0.15 Score=54.36 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=33.9
Q ss_pred cCCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 19 KSKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 19 ~~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
++..-+|++.|=-+.+.+.|.+. -+..|--++... +-..+.+++.||+|+|||+..-
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 34456899998666777776542 111121111111 1123679999999999998543
No 160
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.97 E-value=1.3 Score=41.26 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=54.5
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+.+ .+++.+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~--Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK--GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT--TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc--CCCccc
Confidence 447999999999999998888776 47888999987765544333 35789999993 2332 688888
Q ss_pred cceEEEe
Q 007018 169 VEYVVFD 175 (621)
Q Consensus 169 l~~vViD 175 (621)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888873
No 161
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.77 E-value=1.6 Score=39.23 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=54.7
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhc
Confidence 457999999999999988888775 57899999987765544332 35678999993 233 3688888
Q ss_pred cceEEEec
Q 007018 169 VEYVVFDE 176 (621)
Q Consensus 169 l~~vViDE 176 (621)
+++||.-.
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888643
No 162
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.48 E-value=1.1 Score=44.88 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
....+||+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997542 2344555555555455444433
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.48 E-value=1.5 Score=42.54 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=29.4
Q ss_pred CCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 23 GGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 23 ~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
-+|+++.-.+.+.+.|.+.- +..|..+.... +...+.+++.||+|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 46777776666766665420 11111111110 1234679999999999997543
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.21 E-value=0.17 Score=53.91 Aligned_cols=56 Identities=21% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
+..-+|+++|=-+...+.|.+. -+..|--++... +-.-+.+++.||+|+|||+..-
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 4456899998666777776542 111121111111 1123789999999999998643
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.86 E-value=0.37 Score=49.17 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.3
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
....+|++||+|.+... ....+..++...+....+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 45679999999997642 2344555566555554455544
No 166
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.44 E-value=0.39 Score=51.39 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=35.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKG---YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g---~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
+..-+|+++|=-+.+.+.|.+.= +..|--++... +-.-+.+++.||+|+|||+..-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH
Confidence 44568999987778888886531 11111111111 1134789999999999997543
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.26 E-value=0.38 Score=51.51 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
..+++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999997543
No 168
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.26 E-value=0.84 Score=49.77 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCcceEEEeccccccCC--ChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 167 KSVEYVVFDEADCLFGM--GFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~--gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
....+|||||+|.+... +....+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34568999999998753 333455555544 245577777763
No 169
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.03 E-value=0.94 Score=54.41 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
..|....+..+......+.+++|.++|..-+..++..+.. .++.+..++|..+...+...+.....|..+|+|+|.
T Consensus 635 sGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~ 714 (1151)
T 2eyq_A 635 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 714 (1151)
T ss_dssp TTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT
T ss_pred CCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3455433323323344677999999999888888777764 357788999999999999999999999999999994
Q ss_pred -cccccCCCCCCCEEEE
Q 007018 325 -VAARGIDIPLLDNVIN 340 (621)
Q Consensus 325 -vaarGlDip~v~~VI~ 340 (621)
.+...+.+.++++||.
T Consensus 715 ~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 715 KLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHSCCCCSSEEEEEE
T ss_pred HHHhCCccccccceEEE
Confidence 5566688888888874
No 170
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=88.94 E-value=1.8 Score=39.47 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=53.8
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++..+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCccc
Confidence 558999999999999988877664 57899999988766544332 35789999994 222 2678888
Q ss_pred cceEEE
Q 007018 169 VEYVVF 174 (621)
Q Consensus 169 l~~vVi 174 (621)
+.+||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 998885
No 171
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.90 E-value=1.1 Score=43.10 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=29.7
Q ss_pred cCCcceEEEeccccccC-----CChHHHHHHHHHhcccCCcEEEEEccCcHH
Q 007018 166 LKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (621)
Q Consensus 166 l~~l~~vViDEah~l~~-----~gf~~~l~~il~~l~~~~q~ll~SATl~~~ 212 (621)
..+.+++|+||.-.+++ ......+..++..+...-.+++++.-....
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34678999999987764 444555777777765444466666554433
No 172
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.58 E-value=0.81 Score=48.87 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 173
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.57 E-value=0.28 Score=53.27 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred cceEEEeccccccCCC----------hHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 169 l~~vViDEah~l~~~g----------f~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
..+|+|||+|.+.... ....+...+..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 3689999999887421 22344455555555666777777743
No 174
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.44 E-value=1.7 Score=39.09 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=54.3
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 457999999999999988888764 47888999987765544332 35679999993 233 2678888
Q ss_pred cceEEEec
Q 007018 169 VEYVVFDE 176 (621)
Q Consensus 169 l~~vViDE 176 (621)
+.+||.-.
T Consensus 99 ~~~Vi~~~ 106 (165)
T 1fuk_A 99 VSLVINYD 106 (165)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88887744
No 175
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.35 E-value=2.4 Score=40.08 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=54.5
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 457999999999999988888775 47889999998776654433 35688999993 233 3688888
Q ss_pred cceEEE
Q 007018 169 VEYVVF 174 (621)
Q Consensus 169 l~~vVi 174 (621)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 988874
No 176
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.33 E-value=3.3 Score=41.47 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHH
Q 007018 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (621)
Q Consensus 167 ~~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~ 215 (621)
.++++||||+.-.+. +......+..+...+.+..-++.+.++-......
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~ 228 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS 228 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHH
Confidence 567899999995432 2222344444544443333344566664433333
No 177
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.32 E-value=1.5 Score=47.29 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=55.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcC-----C--
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-----D-- 131 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg-----~-- 131 (621)
.|....+.+-||||||++.. .+... .+..+|||+|+..+|.|++..++.|... .+..+..- +
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-----~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~ 81 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-----EIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSF 81 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-----HHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSS
T ss_pred CCCeEEEeCCCchHHHHHHH-----HHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCccccccccc
Confidence 45678999999999998533 22221 1335899999999999999999887432 22222211 0
Q ss_pred --ChH---HHHH---HH-hCCCCEEEECchHHHHhH
Q 007018 132 --SME---SQFE---EL-AQNPDIIIATPGRLMHHL 158 (621)
Q Consensus 132 --~~~---~~~~---~l-~~~~~IiV~Tpgrl~~~l 158 (621)
..+ .... .+ .....|+|+|...++..+
T Consensus 82 ~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp CCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred CCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 011 1112 22 345679999988887433
No 178
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.12 E-value=3.6 Score=42.59 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.3
Q ss_pred CcEEE--EcCCCchHHHHHH
Q 007018 61 ADVVA--MARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~--~a~TGSGKT~afl 78 (621)
..+++ .|+.|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35778 8999999997543
No 179
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.12 E-value=1 Score=45.46 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
..++.||.|+|||.+..
T Consensus 20 ~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 20 SILINGEDLSYPREVSL 36 (305)
T ss_dssp EEEEECSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997654
No 180
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.08 E-value=0.67 Score=46.44 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=22.8
Q ss_pred CcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 168 ~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
...+|||||+|.+... ....+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999997642 2233445555544455455444
No 181
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=88.06 E-value=0.98 Score=53.97 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH---CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV- 325 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~---~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv- 325 (621)
.|....+-.+...+..+.++||.++|+.-+..++..+.. .++.+..+||+++..+|...+..+..|..+|+|+|.-
T Consensus 105 GKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 105 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 354444444444445678999999999999999999988 4678999999999988888899999999999999953
Q ss_pred ccc---cCCCCCCCEEEEcC
Q 007018 326 AAR---GIDIPLLDNVINWD 342 (621)
Q Consensus 326 aar---GlDip~v~~VI~~d 342 (621)
+.+ -++..++++||.-+
T Consensus 185 L~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 185 VSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp HHHSHHHHHTSCCSEEEESC
T ss_pred HHHHHHhhcccCcCEEEEeC
Confidence 211 14567888888544
No 182
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.00 E-value=0.29 Score=50.41 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.|.=+++.|++|+|||...+-.+..... .+..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-----~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-----DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCC
Confidence 4556899999999999765544443332 36678888764
No 183
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.97 E-value=3.2 Score=42.41 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 479999999999998644
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.89 E-value=1 Score=42.36 Aligned_cols=34 Identities=24% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
|.-+++.|++|+|||......+. . .+.+++++.-
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~----~~~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L----SGKKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H----HCSEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H----cCCcEEEEEC
Confidence 45689999999999976554333 1 2456777653
No 185
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.70 E-value=4.3 Score=42.90 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~---g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
...-+|+++|=-+.+.+.|.+. -+..|--++...+ -.-+.+++.||+|+|||+.+-
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 3456899998555666666542 1222332222221 123789999999999998543
No 186
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.57 E-value=1.5 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp 80 (621)
++-+++.|++|+|||......
T Consensus 105 g~vi~lvG~~GsGKTTl~~~L 125 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKL 125 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456888999999999865533
No 187
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.53 E-value=0.91 Score=42.16 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHhcCC--cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCe
Q 007018 46 PTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (621)
Q Consensus 46 ptpiQ~~aip~il~g~--dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~ 123 (621)
..+-|..++..++... -.++.+.-|++||...+.-++..-.. .|.++.+|+|+..-+..+.+. .++.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~l~~~-------~~l~ 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMNMKQD-------ERLS 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHHHSCT-------TTCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHHHHhh-------cCcC
Confidence 4577999999887654 36779999999998865554433333 589999999998766553221 1111
Q ss_pred EEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHh-cccCCcE
Q 007018 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ-LSENRQT 202 (621)
Q Consensus 124 ~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~-l~~~~q~ 202 (621)
..++ |.. .+.. +...+..=+++|||||-.|.- .++..++.. ...+.|+
T Consensus 104 --------------------~~t~--t~~----~ll~-~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqv 152 (189)
T 2l8b_A 104 --------------------GELI--TGR----RQLL-EGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQV 152 (189)
T ss_dssp --------------------SCSS--STT----TTTT-TSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCE
T ss_pred --------------------ccee--ehh----hhhc-CCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEE
Confidence 0000 111 1111 233345556899999988643 344444443 3345677
Q ss_pred EEEEccC----cHHHHHHHHhcCC
Q 007018 203 LLFSATL----PSALAEFAKAGLR 222 (621)
Q Consensus 203 ll~SATl----~~~l~~~~~~~l~ 222 (621)
||+--+- ...+.-+.+.+..
T Consensus 153 vll~~~~RqG~GnAl~vl~~agv~ 176 (189)
T 2l8b_A 153 LITDSGQRTGTGSALMAMKDAGVN 176 (189)
T ss_dssp EEEESSTTTCSHHHHHHHHHTTCC
T ss_pred EEeCCcccccCCCHHHHHHhCCCc
Confidence 6664431 3445555555543
No 188
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.52 E-value=3.5 Score=41.24 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=28.6
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh----cCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il----~g~dvv~~a~TGSGKT~afl 78 (621)
...+|+++--.+...+.+.. ++..+. ....+++.|++|+|||...-
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRV------------YLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHH------------HHHHHHHHCSCCCCCEEECCTTCCCHHHHH
T ss_pred CcccHHHhhCHHHHHHHHHH------------HHHHHHccCCCCCcEEEECCCCCCHHHHHH
Confidence 34577777555555555532 111111 23679999999999997543
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.42 E-value=1.6 Score=44.13 Aligned_cols=38 Identities=24% Similarity=0.055 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.-+++.|++|+|||...+-.+..... .+..+++++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEECC
Confidence 456999999999999755544443332 24678888754
No 190
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.40 E-value=1.2 Score=44.71 Aligned_cols=18 Identities=17% Similarity=0.064 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||...-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997543
No 191
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.98 E-value=2.1 Score=43.78 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|+.|+|||...-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999997643
No 192
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.58 E-value=3.5 Score=39.18 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l 82 (621)
.|.-+++.|++|+|||......+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356689999999999986654443
No 193
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.46 E-value=1.3 Score=55.59 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.6
Q ss_pred HHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHH
Q 007018 54 MPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (621)
Q Consensus 54 ip~il~------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptre 104 (621)
+..++. ++.+++.+|+|+|||...+..+.+... .|.+++++...-.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEcccc
Confidence 566666 578999999999999876655554433 3667888887643
No 194
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.86 E-value=0.63 Score=46.54 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=28.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
....|+++--.+.+.+.|...= .. -....+++.||+|+|||....
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l-~~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYV-ER------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTT-TT------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCHHHHhCCHHHHHHHHHHH-hC------------CCCCeEEEECcCCcCHHHHHH
Confidence 3456777655666666665421 00 011359999999999997543
No 195
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.46 E-value=0.8 Score=49.40 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHC--CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRK--GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~--g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
...-+|+++.-.+...+.+... -+..|..++.-. +.-.+.+++.||+|+|||...-
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHHH
Confidence 3456899997666666666542 011121111100 0012569999999999998543
No 196
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=85.29 E-value=3.4 Score=37.53 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=54.7
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|.- +. ..+++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhh
Confidence 457999999999999988888775 57888999987766544332 357899999942 22 2678888
Q ss_pred cceEEEec
Q 007018 169 VEYVVFDE 176 (621)
Q Consensus 169 l~~vViDE 176 (621)
+.+||.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 88888644
No 197
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.04 E-value=1.9 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEE
Q 007018 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (621)
Q Consensus 167 ~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~ 205 (621)
....++|+||+|.+... ....+..++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 34789999999987542 234455556655555544443
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=84.92 E-value=3.9 Score=38.40 Aligned_cols=71 Identities=8% Similarity=0.180 Sum_probs=52.8
Q ss_pred CcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----cccCCCCCC
Q 007018 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (621)
Q Consensus 267 ~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----arGlDip~v 335 (621)
.++||.++|+.-+..+++.+... ++.+..++|+.+..... ..+..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999988887765 67888999998876544 3445677899999952 1 233566777
Q ss_pred CEEEE
Q 007018 336 DNVIN 340 (621)
Q Consensus 336 ~~VI~ 340 (621)
++||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77764
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.84 E-value=0.83 Score=43.85 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.-+++.|++|+|||...+--+.+.+... +..+++++-.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeeccc
Confidence 45689999999999976554444433332 4457777643
No 200
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.58 E-value=0.99 Score=51.78 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=25.5
Q ss_pred CcceEEEeccccccCC------ChH----HHHHHHHHhcccCCcEEEEEccC
Q 007018 168 SVEYVVFDEADCLFGM------GFA----EQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 168 ~l~~vViDEah~l~~~------gf~----~~l~~il~~l~~~~q~ll~SATl 209 (621)
.-.+|+|||+|.++.. ... .++...+..+....+++++-||-
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 3468999999998732 122 23333444455556677777773
No 201
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.73 E-value=9.2 Score=41.57 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCC
Q 007018 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPD 145 (621)
Q Consensus 70 GSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~ 145 (621)
...+....+..+...+... ..+.++||.|+|+.-+..+++.+..... .++.+..++|+....+....+ .+..+
T Consensus 318 ~~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~ 394 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESG 394 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSE
T ss_pred hHhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 3344444444444444432 2466899999999999999998877532 357888999988766544332 36789
Q ss_pred EEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 146 IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 146 IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
|+|||. .+.. .+++.++.+||.-..
T Consensus 395 vLvaT~-----~~~~--GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 395 ILVCTD-----VGAR--GMDFPNVHEVLQIGV 419 (563)
T ss_dssp EEEECG-----GGTS--SCCCTTCCEEEEESC
T ss_pred EEEEcc-----hhhc--CCCcccCCEEEEECC
Confidence 999995 3333 688999998886553
No 202
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.35 E-value=4.6 Score=41.83 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|++++-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 4668999999999999988888775 47889999988766544333 35789999994 3333 68888
Q ss_pred CcceEEE
Q 007018 168 SVEYVVF 174 (621)
Q Consensus 168 ~l~~vVi 174 (621)
++++||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998885
No 203
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.53 E-value=2.7 Score=48.79 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.++++.|++|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997543
No 204
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=82.48 E-value=3.5 Score=42.37 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.+..++. |+-+++.|++|||||...+..+..... .+.+++++.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 3445555 456899999999999866544444332 24567777654
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.20 E-value=40 Score=33.41 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=24.3
Q ss_pred cceEEEeccccccC---CChHHHHHHHHHhcccCCcEEEEEccC
Q 007018 169 VEYVVFDEADCLFG---MGFAEQLHKILGQLSENRQTLLFSATL 209 (621)
Q Consensus 169 l~~vViDEah~l~~---~gf~~~l~~il~~l~~~~q~ll~SATl 209 (621)
--+|||||+|.+.. ..+...+..+....+ .. .++++++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 34899999999874 456666666655442 23 34555553
No 206
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.12 E-value=8.7 Score=42.51 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHhcCCcEEEEcCCCchHHHHHH
Q 007018 55 PLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 55 p~il~g~dvv~~a~TGSGKT~afl 78 (621)
..+..|..+++.||+|+|||..+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345678899999999999998543
No 207
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=81.85 E-value=2.7 Score=38.85 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHH---HHH-hCCC
Q 007018 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EEL-AQNP 144 (621)
Q Consensus 69 TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~---~~l-~~~~ 144 (621)
..+.|... +.-++.. . ..+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+.. ..+ .+..
T Consensus 28 ~~~~K~~~-L~~ll~~---~--~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNA---T--GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp CGGGHHHH-HHHHHHH---C---CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSS
T ss_pred CcHHHHHH-HHHHHHh---c--CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 35677653 3333332 1 13567999999999999988888764 57888899876544332 222 3578
Q ss_pred CEEEECchHHHHhHhhcCCCCcCCcceEEE
Q 007018 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 145 ~IiV~Tpgrl~~~l~~~~~~~l~~l~~vVi 174 (621)
+|+|+|.- +. ..+++.++.+||.
T Consensus 98 ~vLvaT~~-----~~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 98 PILVATAV-----AA--RGLDISNVKHVIN 120 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEE
T ss_pred eEEEEcCh-----hh--cCCCcccCCEEEE
Confidence 89999942 22 2577888888876
No 208
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.72 E-value=3.2 Score=43.95 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
-+++.+++|+|||......+. .+.. .|.+++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~-~l~~----~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLAL-YYKG----KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHT----TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEee
Confidence 366789999999976553332 2222 245566554
No 209
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=81.70 E-value=1.6 Score=45.13 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=30.0
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
.+..++. |.-+++.||+|+|||...+ .+...+.. .+.+++++.....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal-~la~~~~~----~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLAL-HAIAEAQK----MGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHH-HHHHHHHH----TTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEEeccccc
Confidence 4555555 3558899999999997544 33333332 24567888765433
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.63 E-value=4.7 Score=39.63 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=20.0
Q ss_pred HhcCCcEEEEcCCCchHHHHHHHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAAFLVPML 82 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~afllp~l 82 (621)
+..|.-+++.|++|||||...+..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44677899999999999986554443
No 211
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=81.32 E-value=15 Score=41.03 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=60.3
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+|+.-+..+.+.+.+. ++.+..++|+.+..+.... + .+..+|+|||. .+. ..+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 3678999999999999988888775 4788888887765554433 2 35789999995 333 368899
Q ss_pred CcceEEEeccccc
Q 007018 168 SVEYVVFDEADCL 180 (621)
Q Consensus 168 ~l~~vViDEah~l 180 (621)
++++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998764
No 212
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.29 E-value=13 Score=40.72 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+|+.-+..+++.+..... .++.+..++|+....+....+ .+..+|+|||. .+.. .+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~--GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGAR--GMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTS--SCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhc--CCCcc
Confidence 466899999999999999998877532 357888999998766544332 36789999995 3333 68889
Q ss_pred CcceEEEecc
Q 007018 168 SVEYVVFDEA 177 (621)
Q Consensus 168 ~l~~vViDEa 177 (621)
++.+||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 9998886554
No 213
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.27 E-value=7 Score=37.35 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----ccc-ccCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPL 334 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaa-rGlDip~ 334 (621)
.+.++||.++|+.-+..++..+.. .++.+..++|+.+.......+. ...+|+|+|. .+. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988887766655 4888999999988776554443 2478999994 222 2356777
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777764
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.24 E-value=1.1 Score=39.52 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=17.0
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (621)
...+..+++.|++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999975
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=81.22 E-value=2.3 Score=48.55 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999997643
No 216
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=81.19 E-value=1.3 Score=46.82 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=33.4
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~ 107 (621)
...++++.|+||||||... .+++..+.. .|..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 4578999999999999874 445555544 3667999999988853
No 217
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.18 E-value=3.8 Score=42.43 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHhc------CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 53 aip~il~------g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
.+..++. |+-+++.|++|+|||...+-.+.+... .|..++++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-----~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-----AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-----CCCeEEEEECCC
Confidence 3455554 356889999999999765544443322 245678877654
No 218
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=80.09 E-value=1.1 Score=51.58 Aligned_cols=54 Identities=17% Similarity=0.157 Sum_probs=33.3
Q ss_pred CCCccCCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 22 SGGFESLNLSPNVFRAIKRKG---YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g---~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
.-+|+++|.-+.+.+.|.+.= ...|.-++... +...+.+++.||.|+|||+.+-
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHHH
Confidence 347888988888888887642 11121111100 1123679999999999997543
No 219
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.90 E-value=3.5 Score=38.95 Aligned_cols=72 Identities=11% Similarity=0.216 Sum_probs=47.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC---CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----cccCCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~---g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----arGlDip~v 335 (621)
.+.++||.++|+.-+..++..+... ++.+..++|+.+...+... +. ...+|+|+|.- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4677999999999999999888874 6778888888765543322 22 35789999942 1 224566667
Q ss_pred CEEEE
Q 007018 336 DNVIN 340 (621)
Q Consensus 336 ~~VI~ 340 (621)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 77664
No 220
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.84 E-value=9.6 Score=38.15 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=53.8
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+|++-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 557999999999988887776654 58899999997766554433 35789999994 333 2688889
Q ss_pred cceEEE
Q 007018 169 VEYVVF 174 (621)
Q Consensus 169 l~~vVi 174 (621)
+.+||.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 998885
No 221
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.79 E-value=1.9 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
|..+++.||+|+|||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6679999999999997543
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.74 E-value=9.3 Score=38.82 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=35.1
Q ss_pred CcceEEEecccccc-CCChHHHHHHHHHhcccCCcEEEEEccCcHHHHHHHHhc
Q 007018 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (621)
Q Consensus 168 ~l~~vViDEah~l~-~~gf~~~l~~il~~l~~~~q~ll~SATl~~~l~~~~~~~ 220 (621)
..+++++|.+-+.- ......++..+...+.+...++.+.+|....+.+.++.+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678899887653 344666777776666666677788888766655555443
No 223
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.02 E-value=3.3 Score=45.09 Aligned_cols=74 Identities=5% Similarity=-0.028 Sum_probs=61.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----cccCCCCCCCEEE
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLLDNVI 339 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----arGlDip~v~~VI 339 (621)
.+.+||.++++.-+......|...|+.+..++|+.+...+...+..+..|..+||++|+- + ...++...+++||
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 568999999999999999999999999999999999998888899999999999999952 1 1223345566666
No 224
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=78.92 E-value=2.2 Score=43.34 Aligned_cols=91 Identities=12% Similarity=0.079 Sum_probs=51.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~ 141 (621)
-+.+.++.|+|||...+-.+.+.... ..+.+++++.....+... .+++++-. +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~---g~g~~vlyId~E~s~~~~---ra~~lGvd--~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ---YPDAVCLFYDSEFGITPA---YLRSMGVD--P------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH---CTTCEEEEEESSCCCCHH---HHHHTTCC--G-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEeccchhhHH---HHHHhCCC--H-------------------
Confidence 47899999999998766554444332 125678998876655332 34454411 1
Q ss_pred CCCCEEEECchHHHHh----HhhcCCCCcCCcceEEEecccccc
Q 007018 142 QNPDIIIATPGRLMHH----LSEVEDMSLKSVEYVVFDEADCLF 181 (621)
Q Consensus 142 ~~~~IiV~Tpgrl~~~----l~~~~~~~l~~l~~vViDEah~l~ 181 (621)
.++++..|..+-+. +.....+.-..+++||||-+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444333222 211111233468899999998775
No 225
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=78.90 E-value=2.5 Score=44.88 Aligned_cols=69 Identities=17% Similarity=0.135 Sum_probs=48.1
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||.||+++-+..+++.++.. ++.+..++|..... ....+ .+..+|+|+|. .+.. .+++. +++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~-~~~~F~~g~~~vLVaT~-----v~e~--GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFER-EYPTIKQKKPDFILATD-----IAEM--GANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STTC--CTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHH-HHhhhcCCCceEEEECC-----hhhe--eeccC-ceE
Confidence 567999999999999998888775 57888888854433 33333 46789999994 2332 57787 888
Q ss_pred EEE
Q 007018 172 VVF 174 (621)
Q Consensus 172 vVi 174 (621)
||.
T Consensus 244 VI~ 246 (440)
T 1yks_A 244 VLD 246 (440)
T ss_dssp EEE
T ss_pred EEe
Confidence 763
No 226
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=78.85 E-value=4.2 Score=43.94 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
.|.-+++.|++|+|||...+-.+...... .|.++++++-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc
Confidence 34568999999999998655444433221 25678888764
No 227
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=78.74 E-value=5.6 Score=40.97 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=54.9
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+++.+... +..+..++|+....++...+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999998888775 47788899988766554333 35688999994 333 3688999
Q ss_pred cceEEE
Q 007018 169 VEYVVF 174 (621)
Q Consensus 169 l~~vVi 174 (621)
+++||.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 999885
No 228
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.40 E-value=7.8 Score=38.98 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=54.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+++.-+..+++.++.. +..+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 4567999999999999988888775 47888899987765544322 35678999994 2232 57788
Q ss_pred CcceEEEec
Q 007018 168 SVEYVVFDE 176 (621)
Q Consensus 168 ~l~~vViDE 176 (621)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888888643
No 229
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.35 E-value=8.8 Score=40.03 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCChHHHHH--
Q 007018 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFE-- 138 (621)
Q Consensus 69 TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~g--------g~~~~~~~~-- 138 (621)
..++|..... -++...... ..+.++||.|+++.-+..+.+.++.. ++.+..++| +.+..++..
T Consensus 340 ~~~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDKLK-EIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHHHH-HHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHHHH-HHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 4566765433 333333211 13668999999999999988888776 578888888 544433322
Q ss_pred -HH-hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 139 -EL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 139 -~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
.+ .+..+|+|+|. .+. ..+++..+.+||+-+.
T Consensus 413 ~~F~~~~~~vLv~T~-----~~~--~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-----VGE--EGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHHHTSCSEEEECG-----GGG--GGGGSTTCCEEEESSC
T ss_pred HHHhcCCceEEEECC-----ccc--cCCCchhCCEEEEeCC
Confidence 22 35689999993 223 2688888888886544
No 230
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=78.16 E-value=4.4 Score=44.83 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHH--hcCCceEEEecC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF--RARKTMFLIVTD 324 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F--~~g~~~ILV~Td 324 (621)
..+.+||.++++.-++.....|...|+.+..++|+++...+..++..+ ..+..+||++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 356899999999999999999999999999999999999888888888 568899999997
No 231
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.11 E-value=8.9 Score=36.92 Aligned_cols=71 Identities=18% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----c--cccCCCCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----A--ARGIDIPL 334 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----a--arGlDip~ 334 (621)
+.++||.++|+.-+..+++.+... ++.+..++|+.+.......+ .+..+|+|+|.- + ..++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888777654 78889999998866544332 356899999942 1 13466777
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 777764
No 232
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.02 E-value=7.4 Score=40.99 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=53.5
Q ss_pred EEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCCcc
Q 007018 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (621)
Q Consensus 95 ~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~ 170 (621)
++||.|+|+.-+..+++.+... ++.+..++|+....+....+ .+..+|+|||. .+.+ .+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~r--GlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASR--GLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTS--SCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhC--CCCcccCC
Confidence 3999999999999988888765 57889999987766544333 35789999995 3333 68899999
Q ss_pred eEEE
Q 007018 171 YVVF 174 (621)
Q Consensus 171 ~vVi 174 (621)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 233
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.00 E-value=6 Score=37.70 Aligned_cols=73 Identities=12% Similarity=0.243 Sum_probs=44.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----cccc-cCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GIDIPL 334 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaar-GlDip~ 334 (621)
.+.++||.++|+.-+..++..+... ++.+..++|+.+... ....+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3568999999999999988888764 456677777755332 33455567789999993 2223 355666
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666664
No 234
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=77.75 E-value=5.8 Score=40.57 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888765 47888899987765543332 35789999994 233 368888
Q ss_pred CcceEEEecc
Q 007018 168 SVEYVVFDEA 177 (621)
Q Consensus 168 ~l~~vViDEa 177 (621)
.+++||.-..
T Consensus 318 ~~~~Vi~~~~ 327 (391)
T 1xti_A 318 RVNIAFNYDM 327 (391)
T ss_dssp TEEEEEESSC
T ss_pred cCCEEEEeCC
Confidence 9999887554
No 235
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.55 E-value=16 Score=39.38 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=23.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.+++.|++|+|||..+.-.+. .+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~-~l~~----~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY-YYQR----KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHH----TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHh----CCCeEEEEec
Confidence 377899999999987553332 3332 3566777765
No 236
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=77.25 E-value=26 Score=39.20 Aligned_cols=78 Identities=22% Similarity=0.179 Sum_probs=59.3
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+|+.-+..+.+.+.+. ++.+..++|+.+..+.... + .+..+|+|||. .+. ..+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip 506 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIP 506 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCC
Confidence 3668999999999999988888775 4778888887766554433 3 35689999983 233 368899
Q ss_pred CcceEEEeccccc
Q 007018 168 SVEYVVFDEADCL 180 (621)
Q Consensus 168 ~l~~vViDEah~l 180 (621)
.+++||+=+++..
T Consensus 507 ~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 507 EVSLVAILDADKE 519 (664)
T ss_dssp TEEEEEETTTTSC
T ss_pred CCCEEEEeCCccc
Confidence 9999999888753
No 237
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=76.81 E-value=8.9 Score=38.32 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 62 dvv~~a~TGSGKT~afll 79 (621)
-+++.+++|+|||.....
T Consensus 100 vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEECSSCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466789999999976553
No 238
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.51 E-value=7.4 Score=36.85 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=47.6
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c----cc--cCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----AR--GIDIP 333 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a----ar--GlDip 333 (621)
.+.++||.++|+.-+..+...+... ++.+..++|+.+.......+ +..+|+|+|.- + .+ .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4668999999999999888888765 47788889987655433322 46789999952 1 11 24555
Q ss_pred CCCEEEE
Q 007018 334 LLDNVIN 340 (621)
Q Consensus 334 ~v~~VI~ 340 (621)
.+++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 6666653
No 239
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=75.99 E-value=7 Score=40.13 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=54.5
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHH---H-hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|++++-+..+++.+...+ +.+..++|+.+..++... + .+..+|+|+|. .+. ..+++.+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 4589999999999999988888764 778889998876654333 2 35679999994 233 3688889
Q ss_pred cceEEEe
Q 007018 169 VEYVVFD 175 (621)
Q Consensus 169 l~~vViD 175 (621)
+.+||.-
T Consensus 327 ~~~Vi~~ 333 (400)
T 1s2m_A 327 VNVVINF 333 (400)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9888853
No 240
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=75.78 E-value=12 Score=34.23 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=50.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC--CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----cc-ccCCCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPLLD 336 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~--g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----aa-rGlDip~v~ 336 (621)
.+.++||.++++.-+..+.+.+... .+.+..++|+.+.......+. ...+|+|+|.- +. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999988876 466788888877554433322 25789999951 11 235566677
Q ss_pred EEEE
Q 007018 337 NVIN 340 (621)
Q Consensus 337 ~VI~ 340 (621)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 241
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=75.60 E-value=33 Score=34.64 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=58.0
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.|+++.-+..+++.++.. +..+..++|+.+..++...+ .+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999988888765 47788899987766544333 35688999994 333 368899
Q ss_pred CcceEEEecccc
Q 007018 168 SVEYVVFDEADC 179 (621)
Q Consensus 168 ~l~~vViDEah~ 179 (621)
++++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999766544
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.36 E-value=11 Score=40.71 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+.+.|++|||||...-
T Consensus 295 VI~LVGpNGSGKTTLl~ 311 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG 311 (503)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCcccHHHHHH
Confidence 37789999999998543
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.03 E-value=6.2 Score=44.97 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCc--------EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCC
Q 007018 51 RKTMPLILSGAD--------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (621)
Q Consensus 51 ~~aip~il~g~d--------vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l 122 (621)
..++.....+.. +++.||||+|||...- .+.......+...+.+- +..+......
T Consensus 504 ~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~-----ala~~l~~~~~~~i~i~------------~s~~~~~~~~ 566 (758)
T 3pxi_A 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR-----ALAESIFGDEESMIRID------------MSEYMEKHST 566 (758)
T ss_dssp HHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH-----HHHHHHHSCTTCEEEEE------------GGGGCSSCCC
T ss_pred HHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH-----HHHHHhcCCCcceEEEe------------chhccccccc
Q ss_pred eEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEeccccccCCChHHHHHHHHHh-------
Q 007018 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ------- 195 (621)
Q Consensus 123 ~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~gf~~~l~~il~~------- 195 (621)
. .+.+...+...+ .++|+|||+|.+ .......+..++..
T Consensus 567 ~---------------------------~~~l~~~~~~~~------~~vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~ 612 (758)
T 3pxi_A 567 S---------------------------GGQLTEKVRRKP------YSVVLLDAIEKA-HPDVFNILLQVLEDGRLTDSK 612 (758)
T ss_dssp C------------------------------CHHHHHHCS------SSEEEEECGGGS-CHHHHHHHHHHHHHSBCC---
T ss_pred c---------------------------cchhhHHHHhCC------CeEEEEeCcccc-CHHHHHHHHHHhccCeEEcCC
Q ss_pred ----cccCCcEEEEE
Q 007018 196 ----LSENRQTLLFS 206 (621)
Q Consensus 196 ----l~~~~q~ll~S 206 (621)
-+.+..+|+.|
T Consensus 613 g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 613 GRTVDFRNTILIMTS 627 (758)
T ss_dssp --CCBCTTCEEEEEE
T ss_pred CCEeccCCeEEEEeC
No 244
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=74.80 E-value=1.9 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|.||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 3455678876 7789999999998743
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.42 E-value=6.4 Score=41.23 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=24.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhh-CCCCCeEEEEEcch
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPT 102 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~-~~~~g~~~LIL~Pt 102 (621)
.-+.+.|+.|||||......++..+... ....+..++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4588999999999976553333332211 01124567777543
No 246
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=74.22 E-value=8.3 Score=39.76 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=54.5
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
..++||.|+++.-+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCccc
Confidence 347999999999999988888765 47788899988765544332 35788999995 333 3688999
Q ss_pred cceEEEe
Q 007018 169 VEYVVFD 175 (621)
Q Consensus 169 l~~vViD 175 (621)
+++||.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9988863
No 247
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.21 E-value=3.3 Score=43.99 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=22.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
-+++.+++|+|||....-.+. .+... .|.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~---~G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK---HKKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT---SCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh---cCCeEEEEe
Confidence 466789999999987654433 33321 166676655
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.13 E-value=11 Score=43.42 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.++.+++.||+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4577999999999999753
No 249
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.55 E-value=5.1 Score=43.35 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhc------CCcEEEEcCCCchHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILS------GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~il~------g~dvv~~a~TGSGKT~af 77 (621)
..-+|+++.-.+.....+...- |.. |.++. .+.+++.||+|+|||...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~---------~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKN---------PSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHC---------GGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhc---------hhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4568998876666666665421 111 11111 245999999999999754
No 250
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=73.36 E-value=52 Score=29.59 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=70.0
Q ss_pred cHHHHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcch-hhHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHH
Q 007018 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (621)
Q Consensus 210 ~~~l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~ 288 (621)
+..+.+++...+.+...+... ........+..+.. .+-...+...+.......+.+.|.+.+..++..+...|..
T Consensus 8 t~~Il~~An~li~~~~~~~~~----~~~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~ 83 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAF----DRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKA 83 (174)
T ss_dssp CHHHHHHHHTTSCC------------CCCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCcccCC----CCCCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHH
Confidence 466777777776543211111 11122233344432 3334455555544222356788999999999999999999
Q ss_pred CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccCCCCCCCEEEEcCC
Q 007018 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (621)
Q Consensus 289 ~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGlDip~v~~VI~~d~ 343 (621)
.|+++..+.++-. ...-.|.|+|--.+.|+.+ +.||.+++
T Consensus 84 ~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 84 RGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred cCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 9998877665421 1234699999999999997 56676664
No 251
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=73.31 E-value=2.2 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=19.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ ++..|+||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 344567876 7789999999998743
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=73.02 E-value=9 Score=48.25 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=66.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCC-CeEEEEEcCCChHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQF 137 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~-l~~~~~~gg~~~~~~~ 137 (621)
.|+.+++.+++|+|||...+..+.+.+.. |.+++++.-. ++..+++ ...++-... +. +..-+ ..+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-----Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~---~~~pd-~~e-- 1145 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAE-HALDPIY--ARKLGVDIDNLL---CSQPD-TGE-- 1145 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTT-SCCCHHH--HHHTTCCTTTCE---EECCS-SHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEcc-ccHHHHH--HHHcCCChhHhe---eecCc-chH--
Confidence 46789999999999998777665555443 6678877643 3444444 334432221 11 11100 000
Q ss_pred HHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEecccccc-------CC-----C-----hHHHHHHHHHhcccCC
Q 007018 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-------GM-----G-----FAEQLHKILGQLSENR 200 (621)
Q Consensus 138 ~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~-------~~-----g-----f~~~l~~il~~l~~~~ 200 (621)
+..++.+.+.+ ....++|||||...+. +| | +...+.++...+....
T Consensus 1146 ------------~~~~i~~~l~~-----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~ 1208 (2050)
T 3cmu_A 1146 ------------QALEICDALAR-----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1208 (2050)
T ss_dssp ------------HHHHHHHHHHH-----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred ------------HHHHHHHHHHH-----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 01122233322 4568899999988662 11 2 2234556666666666
Q ss_pred cEEEEEccC
Q 007018 201 QTLLFSATL 209 (621)
Q Consensus 201 q~ll~SATl 209 (621)
-+++++...
T Consensus 1209 stiI~tN~~ 1217 (2050)
T 3cmu_A 1209 TLLIFINQI 1217 (2050)
T ss_dssp CEEEEEECC
T ss_pred eEEEEecCC
Confidence 677777554
No 253
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=72.98 E-value=6.5 Score=38.75 Aligned_cols=44 Identities=14% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHCCCCCChHHHH-HHHHHHhcCC-----cEEEEcCCCchHHHHHH
Q 007018 32 PNVFRAIKRKGYKVPTPIQR-KTMPLILSGA-----DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 32 ~~l~~~l~~~g~~~ptpiQ~-~aip~il~g~-----dvv~~a~TGSGKT~afl 78 (621)
.++.+-|+-.||. |++- .++..++.++ .+++.||.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4788888888987 5553 3356666664 49999999999998665
No 254
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.80 E-value=6 Score=49.03 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=69.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l 140 (621)
+-+.+.+|.|||||...+-.+.+..+ .|..++++.+..+|.... ++.++-. +.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~-----~g~~~~~i~~e~~~~~~~---~~~~Gv~--~~----------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHALDPIY---ARKLGVD--ID----------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEECTTSCCCHHH---HHHTTCC--GG-----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCCHHH---HHHcCCC--HH-----------------
Confidence 55899999999999876654444333 366799999987776653 5555421 11
Q ss_pred hCCCCEEEECchHHHHhHhhcC-CCCcCCcceEEEeccccccC------------CChHH-----HHHHHHHhcccCCcE
Q 007018 141 AQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADCLFG------------MGFAE-----QLHKILGQLSENRQT 202 (621)
Q Consensus 141 ~~~~~IiV~Tpgrl~~~l~~~~-~~~l~~l~~vViDEah~l~~------------~gf~~-----~l~~il~~l~~~~q~ 202 (621)
+++|.-|..--+++.-.. .+.-..+++||||...-+.. +|... .+..+...+.+..-+
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~ 1560 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 1560 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ----HeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcE
Confidence 145555533222221100 12234678999998887652 22222 234444445555557
Q ss_pred EEEEccCcHH
Q 007018 203 LLFSATLPSA 212 (621)
Q Consensus 203 ll~SATl~~~ 212 (621)
++|...+...
T Consensus 1561 ~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1561 LIFINQIRMK 1570 (1706)
T ss_dssp EEEEECBC--
T ss_pred EEEeeccccc
Confidence 7777776443
No 255
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.69 E-value=10 Score=35.84 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=50.2
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----cccCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIP 333 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----arGlDip 333 (621)
.+.++||.++|+.-+..+.+.+... ++.+..++|+.+...+...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3568999999999999998888764 57788899998876554332 35789999953 1 1234555
Q ss_pred CCCEEEE
Q 007018 334 LLDNVIN 340 (621)
Q Consensus 334 ~v~~VI~ 340 (621)
.+++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 5666553
No 256
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.59 E-value=9.2 Score=35.16 Aligned_cols=71 Identities=10% Similarity=0.114 Sum_probs=48.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----ccc-cCCCCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR-GIDIPL 334 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----aar-GlDip~ 334 (621)
+.++||.++|+.-+..+++.+... +..+..++|+.+....... ..+..+|+|+|.- +.+ .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999888887654 5678888998876543322 2356789999952 122 235556
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 666663
No 257
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.06 E-value=15 Score=35.66 Aligned_cols=72 Identities=13% Similarity=0.089 Sum_probs=51.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----ccc--ccCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA--RGIDIP 333 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaa--rGlDip 333 (621)
.+.++||.++|+.-+..+...+... +..+..++|+......... +..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999888888764 5667788888776654332 3333 88999994 222 246677
Q ss_pred CCCEEEE
Q 007018 334 LLDNVIN 340 (621)
Q Consensus 334 ~v~~VI~ 340 (621)
.+++||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7777764
No 258
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=72.01 E-value=2.4 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=18.6
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (621)
+..++.|.+ +++.|+||||||.+.
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 344567876 678999999999874
No 259
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.98 E-value=2.5 Score=44.40 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.4
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ +++.|.||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 345567876 7789999999998754
No 260
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.68 E-value=2.7 Score=44.13 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.7
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|+||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566678877 6779999999998754
No 261
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=71.62 E-value=2.5 Score=43.74 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 007018 55 PLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 55 p~il~g~d--vv~~a~TGSGKT~af 77 (621)
..++.|.+ ++..|+||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 44567876 778999999999874
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=71.59 E-value=4.7 Score=49.08 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=29.8
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~ 205 (621)
+++-+++|+|||=.-+|..-...+.+.+..+.+++-+|..
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~I 1272 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEE
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4566789999998877877777888888877767644443
No 263
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=71.07 E-value=2.6 Score=43.78 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (621)
+..++.|.+ +++.|+||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344567876 778999999999874
No 264
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=71.04 E-value=2.7 Score=43.21 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (621)
+..++.|.+ ++..|+||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 345567876 778999999999874
No 265
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=71.01 E-value=2.8 Score=43.11 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.3
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHH
Q 007018 55 PLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 55 p~il~g~d--vv~~a~TGSGKT~af 77 (621)
..++.|.+ +++.|+||||||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 44567876 778999999999874
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=70.99 E-value=3.6 Score=38.89 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=28.5
Q ss_pred CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
+.--+.-|..++..+..|.-+.+.||.|||||..+-
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 344455677888888889999999999999997543
No 267
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=70.74 E-value=2.8 Score=43.13 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ ++..|+||||||....
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHcCCccceeeecCCCCCCCeEEe
Confidence 345567876 7789999999998743
No 268
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=70.61 E-value=2.6 Score=43.45 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=18.6
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 55 p~il~g~d--vv~~a~TGSGKT~afl 78 (621)
..++.|.+ +++.|+||||||.+..
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCCcceEEEECCCCCCcceEee
Confidence 34567876 7789999999998743
No 269
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=70.58 E-value=3 Score=42.62 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|+||||||.+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 4566778876 7789999999998743
No 270
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=70.52 E-value=2.9 Score=43.23 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=19.4
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (621)
.+..++.|.+ +++.|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3455677876 677999999999874
No 271
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=70.47 E-value=2.8 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|+||||||....
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3455678876 6789999999998743
No 272
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=70.38 E-value=9.1 Score=41.07 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=55.7
Q ss_pred CchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCChHHHH---H
Q 007018 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQF---E 138 (621)
Q Consensus 70 GSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~g--------g~~~~~~~---~ 138 (621)
.++|..... -++..+... ..+.++||.|+++.-+..+.+.+...+...++.+..++| +.+..++. .
T Consensus 369 ~~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 369 ENPKLRDLY-LVLQEEYHL--KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp CCHHHHHHH-HHHHHHHHH--CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCHHHHHHH-HHHHHHhcc--CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 367765433 333333221 135689999999999999999998876544455555555 43333332 2
Q ss_pred HHh--CCCCEEEECchHHHHhHhhcCCCCcCCcceEEE
Q 007018 139 ELA--QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 139 ~l~--~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vVi 174 (621)
.+. +..+|+|+|. .+. ..+++.++++||.
T Consensus 446 ~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 446 AFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred HHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 232 4578999994 233 3688889988886
No 273
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=70.22 E-value=2.6 Score=43.46 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=20.5
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4556678876 6779999999998754
No 274
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=70.17 E-value=3 Score=43.22 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ ++..|+||||||.+..
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 445577876 7789999999998643
No 275
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=70.15 E-value=2.7 Score=43.36 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=18.7
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~af 77 (621)
+..++.|.+ +++.|+||||||...
T Consensus 98 v~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 98 LRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCceeee
Confidence 344567876 778999999999874
No 276
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=70.06 E-value=2.8 Score=43.31 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ +++.|+||||||.+..
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 445567876 7789999999998643
No 277
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.49 E-value=3 Score=43.36 Aligned_cols=42 Identities=26% Similarity=0.498 Sum_probs=29.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreL 105 (621)
.+.++++.|+||||||...-..+. .+.. .|.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~-~~~~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL-REYM----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH-HHHT----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH-HHHH----CCCEEEEEeCCcCH
Confidence 467899999999999975443333 3322 35678888887653
No 278
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=69.23 E-value=3.1 Score=43.40 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.5
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ +++.|+||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 445667876 7789999999998754
No 279
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=69.05 E-value=2.7 Score=43.54 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ ++..|+||||||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4566778876 6779999999998743
No 280
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=68.98 E-value=2.9 Score=44.00 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.4
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (621)
.+..++.|.+ +++.|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4666788877 678999999999874
No 281
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=68.86 E-value=3.1 Score=43.22 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=18.6
Q ss_pred HHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 55 p~il~g~d--vv~~a~TGSGKT~afl 78 (621)
..++.|.+ +++.|.||||||....
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhCCceEEEEeecCCCCCcceecc
Confidence 34567876 7789999999998643
No 282
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=68.78 E-value=2.6 Score=43.33 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
.+..++.|.+ +++.|+||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3445567876 7789999999998754
No 283
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.59 E-value=1 Score=40.91 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=50.7
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPD 98 (170)
Confidence 557999999999999888877665 47788888886554433222 24678999993 222 2577777
Q ss_pred cceEEEec
Q 007018 169 VEYVVFDE 176 (621)
Q Consensus 169 l~~vViDE 176 (621)
+.+||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 88777643
No 284
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=68.48 E-value=5.7 Score=44.65 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=48.6
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||.||+++-+..+++.++.. ++.+..++|.. ....+..+ .+..+|+|+|. .+.. .+++. +.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 567999999999999888877765 57888888853 33333333 35789999994 3333 57777 777
Q ss_pred EE
Q 007018 172 VV 173 (621)
Q Consensus 172 vV 173 (621)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 285
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.15 E-value=34 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=51.6
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH---HH-hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL-AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~---~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+...+|++.+..-+..+.+.+.+.+ ..+..++|+.+..+... .+ .+..+|+|+|+..+- ..+++.+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~ 416 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKN 416 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCS
T ss_pred CCCeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------ccccccc
Confidence 3344455555665666666665543 47888888877554332 22 467799999976554 3688999
Q ss_pred cceEEEecccc
Q 007018 169 VEYVVFDEADC 179 (621)
Q Consensus 169 l~~vViDEah~ 179 (621)
+.+||+.....
T Consensus 417 v~~vi~~~~~~ 427 (510)
T 2oca_A 417 LHHVVLAHGVK 427 (510)
T ss_dssp EEEEEESSCCC
T ss_pred CcEEEEeCCCC
Confidence 99999988873
No 286
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.90 E-value=6.1 Score=42.84 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=26.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HhcCCcEEEEcCCCchHHHH
Q 007018 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 35 ~~~l~~~g~~~ptpiQ~~aip~-il~g~dvv~~a~TGSGKT~a 76 (621)
+..+.+.|. +++.+..-+.. +..|..+++.|+||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555563 33444444444 34678899999999999974
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.74 E-value=2.9 Score=38.17 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.5
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (621)
+.|+-+++.||+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999853
No 288
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=67.36 E-value=3 Score=43.50 Aligned_cols=33 Identities=33% Similarity=0.525 Sum_probs=23.0
Q ss_pred ChHHHHHHHH--------HHhcCCc--EEEEcCCCchHHHHHH
Q 007018 46 PTPIQRKTMP--------LILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 46 ptpiQ~~aip--------~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..-|.+.+. .++.|.+ +++.|+||||||.+..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 3444665553 4567776 7789999999998743
No 289
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=67.01 E-value=3.7 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ +++.|.||||||....
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 344567876 7789999999998743
No 290
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=66.72 E-value=8 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999753
No 291
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=66.65 E-value=7.3 Score=42.20 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
+.++++.|.||||||.+.-..+...+.... ....+.+++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~-p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQ-PEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCC-TTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCC-CceEEEEEECCc
Confidence 457999999999999865444444443322 234555555554
No 292
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.39 E-value=3 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+-++++||||||||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998654
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=65.58 E-value=2.8 Score=41.23 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=17.1
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~af 77 (621)
+..|.-+++.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 346677899999999999753
No 294
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.31 E-value=11 Score=36.98 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997543
No 295
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=65.29 E-value=8 Score=37.26 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
...+|+++.-.+.+.+.+...- +..+..++... ....+.+++.||+|+|||...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 4568999987777777765420 00111000000 0113569999999999997543
No 296
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=65.25 E-value=7 Score=41.26 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||+||+++-+..+++.+++. ++.+..++|+.. ......+ .+..+|+|+|. .+.. .+++. +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcE
Confidence 447999999999999998888776 578888888743 2223333 46789999994 3333 56665 554
Q ss_pred E
Q 007018 172 V 172 (621)
Q Consensus 172 v 172 (621)
|
T Consensus 238 V 238 (431)
T 2v6i_A 238 V 238 (431)
T ss_dssp E
T ss_pred E
Confidence 4
No 297
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=65.25 E-value=4 Score=41.14 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHhcCCcEEEEcCCCchHHHHH
Q 007018 53 TMPLILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 53 aip~il~g~dvv~~a~TGSGKT~af 77 (621)
..-.+..+..+++.||+|+|||...
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHHH
Confidence 3344556889999999999999753
No 298
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=65.19 E-value=3.3 Score=43.03 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEEcCCCchHHHHHH
Q 007018 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 54 ip~il~g~d--vv~~a~TGSGKT~afl 78 (621)
+..++.|.+ +++.|+||||||....
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 445567876 7789999999998743
No 299
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=65.07 E-value=17 Score=44.16 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=30.9
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEE
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~S 206 (621)
+++-+++|+||+=.-+|..-...+.+.+..+.+++-+++.+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56778999999988888777777888877776666555443
No 300
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=65.01 E-value=3.1 Score=42.20 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+-++++||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 347889999999998654
No 301
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.89 E-value=8.1 Score=41.75 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 007018 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (621)
++.--...-..+.-.+..+.++++.||+|+|||...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 343333444555566678899999999999999753
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=64.76 E-value=4 Score=42.13 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.3
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (621)
+..|..+++.|+||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44688999999999999974
No 303
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=64.70 E-value=9.2 Score=35.77 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=49.2
Q ss_pred hHHHH-HHHHHHHhc--cCCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEe
Q 007018 250 EKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (621)
Q Consensus 250 ~k~~~-L~~~l~~~~--~~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~ 322 (621)
.|... ++.++.... ..+.++||.++++.-+..+++.+... ++.+..++|+.+....... + ...+|+|+
T Consensus 63 GKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~ 137 (224)
T 1qde_A 63 GKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVG 137 (224)
T ss_dssp SHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEE
T ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEE
Confidence 45544 444444332 23568999999999999888877753 6778888888765443322 2 23789999
Q ss_pred cCcc------cccCCCCCCCEEEE
Q 007018 323 TDVA------ARGIDIPLLDNVIN 340 (621)
Q Consensus 323 Tdva------arGlDip~v~~VI~ 340 (621)
|.-. ...+++..+++||.
T Consensus 138 Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 138 TPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CHHHHHHHHHhCCcchhhCcEEEE
Confidence 8421 23445566666663
No 304
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=64.50 E-value=17 Score=36.42 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.+++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37789999999997644
No 305
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=64.47 E-value=23 Score=33.76 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----cccCCCCCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----arGlDip~v 335 (621)
+.++||.++|+.-+..+...+... ++.+..++|+.+.......+ ....+|+|+|.- + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 458999999999999888777654 56777888887755433222 346789999952 2 123466667
Q ss_pred CEEEE
Q 007018 336 DNVIN 340 (621)
Q Consensus 336 ~~VI~ 340 (621)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77663
No 306
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=64.45 E-value=2.9 Score=39.44 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
|+-+++.|+||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5669999999999997544
No 307
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=64.43 E-value=3.4 Score=41.78 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.3
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 37889999999998654
No 308
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=64.31 E-value=6.5 Score=41.48 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHhc--CCcEEEEcCCCchHHHH
Q 007018 49 IQRKTMPLILS--GADVVAMARTGSGKTAA 76 (621)
Q Consensus 49 iQ~~aip~il~--g~dvv~~a~TGSGKT~a 76 (621)
-+..++..++. |.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34445554443 34578999999999975
No 309
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=64.15 E-value=11 Score=34.52 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=19.2
Q ss_pred CCEEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 144 ~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
.+++-+.+..+...+... ...+++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l----~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD----LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH----TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh----cCCCCEEEEECCC
Confidence 455555556666666542 2357889998654
No 310
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=64.12 E-value=19 Score=38.96 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=61.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~ 138 (621)
.|.-+++.|++|+|||......+- .+.. .|.+++++++... ..|+...+..+ ++ ...+ ..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g-~~~~----~G~~vi~~~~ee~-~~~l~~~~~~~----g~---------~~~~-~~ 339 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE-NACA----NKERAILFAYEES-RAQLLRNAYSW----GM---------DFEE-ME 339 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH-HHHT----TTCCEEEEESSSC-HHHHHHHHHTT----SC---------CHHH-HH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHh----CCCCEEEEEEeCC-HHHHHHHHHHc----CC---------CHHH-HH
Confidence 456688999999999975443322 2221 2556777776432 23444333322 11 1111 11
Q ss_pred HHhCCCCEEE-----ECchHHHHhHhhcCCCCcCCcceEEEeccccccCCC-----hHHHHHHHHHhcccC-CcEEEEEc
Q 007018 139 ELAQNPDIII-----ATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKILGQLSEN-RQTLLFSA 207 (621)
Q Consensus 139 ~l~~~~~IiV-----~Tpgrl~~~l~~~~~~~l~~l~~vViDEah~l~~~g-----f~~~l~~il~~l~~~-~q~ll~SA 207 (621)
. .+...+.= -+.|.....+.. .....+.++||+| -=.-++.. ....+..++..+... .-+++.|-
T Consensus 340 ~-~g~~~~~~~~p~~LS~g~~q~~~~a--~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh 415 (525)
T 1tf7_A 340 R-QNLLKIVCAYPESAGLEDHLQIIKS--EINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 415 (525)
T ss_dssp H-TTSEEECCCCGGGSCHHHHHHHHHH--HHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred h-CCCEEEEEeccccCCHHHHHHHHHH--HHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 1 01111110 123333333332 1224567899999 54555655 666677776666443 33444443
Q ss_pred c
Q 007018 208 T 208 (621)
Q Consensus 208 T 208 (621)
.
T Consensus 416 ~ 416 (525)
T 1tf7_A 416 S 416 (525)
T ss_dssp C
T ss_pred c
Confidence 3
No 311
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=63.92 E-value=4 Score=38.27 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|+-+++.||+|||||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46668899999999998543
No 312
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=63.86 E-value=9.4 Score=45.32 Aligned_cols=84 Identities=13% Similarity=0.083 Sum_probs=60.3
Q ss_pred HHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHC----CC----CceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-
Q 007018 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV- 325 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~----g~----~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv- 325 (621)
.+-.+......+.++||.++|+.-+..++..+... ++ .+..++|+.+...+......+.+ .+|+|+|+-
T Consensus 88 ~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~ 165 (1054)
T 1gku_B 88 GLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQF 165 (1054)
T ss_dssp HHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHH
T ss_pred HHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHH
Confidence 33344444446788999999999988888777653 56 78899999998887777777766 899999952
Q ss_pred ccccCC-CCCCCEEEE
Q 007018 326 AARGID-IPLLDNVIN 340 (621)
Q Consensus 326 aarGlD-ip~v~~VI~ 340 (621)
+..-+. +..+++||.
T Consensus 166 L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 166 LSKHYRELGHFDFIFV 181 (1054)
T ss_dssp HHHCSTTSCCCSEEEE
T ss_pred HHHHHHHhccCCEEEE
Confidence 222222 557778774
No 313
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.56 E-value=4.1 Score=37.95 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|+-+++.||+|||||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999853
No 314
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=63.37 E-value=3.3 Score=38.41 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.++.+++.|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999998643
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=63.14 E-value=3.2 Score=38.42 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (621)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999753
No 316
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=62.79 E-value=9.5 Score=41.81 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=28.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
.++++.|.||||||.+.-..++..+..+ .....+.+++=|-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~-sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKS-TPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhC-CCcceEEEEeCCCh
Confidence 5799999999999987554445444333 23356666666653
No 317
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.74 E-value=11 Score=48.85 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHH-HH---HHHhcCCcEEEEcCCCchHHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRK-TM---PLILSGADVVAMARTGSGKTAAFLV 79 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~-ai---p~il~g~dvv~~a~TGSGKT~afll 79 (621)
+.+.+.+.+.+.|+. +++.+.. ++ ..+...+.+++.||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344566677778885 6666633 32 3344567899999999999987653
No 318
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=62.60 E-value=7.5 Score=39.27 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=31.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhh-CCCCCeEEEEEcchHHH-HHHHHHHHHHh
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDL-ALQTLKFTKEL 116 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~-~~~~g~~~LIL~PtreL-a~Q~~~~~~~l 116 (621)
.-+++.|++|+|||...+..+....... ....+.+++++.-...+ ..++...++.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5688999999999986554433322110 00114578888765422 33444444444
No 319
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=62.55 E-value=3.6 Score=41.91 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=17.2
Q ss_pred HhcCCcEEEEcCCCchHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~a 76 (621)
+..|..+++.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999983
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=61.99 E-value=4.1 Score=39.68 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
++++|+||||||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 689999999999753
No 321
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=61.90 E-value=3.7 Score=37.31 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998644
No 322
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.17 E-value=5.4 Score=41.15 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=16.4
Q ss_pred cCCc--EEEEcCCCchHHHHHH
Q 007018 59 SGAD--VVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~d--vv~~a~TGSGKT~afl 78 (621)
.|.+ +++.|+||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4776 6899999999998754
No 323
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=60.96 E-value=3.8 Score=36.96 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
++-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 324
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=60.95 E-value=3.6 Score=36.55 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998543
No 325
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.80 E-value=4.7 Score=37.81 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (621)
+.|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 467789999999999998533
No 326
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=60.78 E-value=15 Score=40.84 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=48.6
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||.|+|+.-+..+++.++.. ++.+..++|... ...++.+ .+..+|+|||. .+.. .+++. +++
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R-~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTH-HHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHH-HHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceE
Confidence 457999999999999998888776 477888887533 3333333 46789999995 3333 57774 776
Q ss_pred EE
Q 007018 172 VV 173 (621)
Q Consensus 172 vV 173 (621)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 327
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.77 E-value=14 Score=48.61 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHH-HHH---HHhcCCcEEEEcCCCchHHHHHH
Q 007018 30 LSPNVFRAIKRKGYKVPTPIQRK-TMP---LILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 30 L~~~l~~~l~~~g~~~ptpiQ~~-aip---~il~g~dvv~~a~TGSGKT~afl 78 (621)
|...+.+.+.++|+. |+|.+.. ++. .+.....+++.||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 345566667788885 6666653 332 23345679999999999999865
No 328
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=60.67 E-value=12 Score=41.13 Aligned_cols=42 Identities=24% Similarity=0.394 Sum_probs=31.5
Q ss_pred cCCcceEEEeccccccCCChHHHHHHHHHhcccCCcEEEEEcc
Q 007018 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (621)
Q Consensus 166 l~~l~~vViDEah~l~~~gf~~~l~~il~~l~~~~q~ll~SAT 208 (621)
+.+-+++++||.-.-+|......+.+.+..+..++ ++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~-tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNK-TVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 45677999999998888877788888887776544 5555554
No 329
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.64 E-value=9.9 Score=40.29 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=48.0
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||.|||+.-+.++++.+++. ++.+..++|... ...+..+ .+..+|+|+|. .+.. .+++.. .+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CE
Confidence 347999999999999988887664 577888877654 3333333 35789999994 3333 677777 66
Q ss_pred EE
Q 007018 172 VV 173 (621)
Q Consensus 172 vV 173 (621)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 330
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=60.44 E-value=6.2 Score=47.38 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=29.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 64 v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
++.|..|||||.+.+--+...+..+. .+.++|+|||..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~--~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP--FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT--TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--CCCcEEEEecCc
Confidence 68899999999987766666655432 456899999976
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=60.37 E-value=2.8 Score=38.03 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (621)
..++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998544
No 332
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=59.77 E-value=7.1 Score=38.61 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcc
Q 007018 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~P 101 (621)
.|.-+++.|++|+|||......+. .+... .|..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~-~~~~~---~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL-QWGTA---MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH-HHHHT---SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH-HHHHH---cCCeEEEEeC
Confidence 567789999999999976543333 22221 2545666653
No 333
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=59.58 E-value=10 Score=42.37 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=46.4
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEc--------CCChHHHHH---HH-h-CCCCEEEECchHHHHhH
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFE---EL-A-QNPDIIIATPGRLMHHL 158 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~g--------g~~~~~~~~---~l-~-~~~~IiV~Tpgrl~~~l 158 (621)
.+.++||.|+++.-+..+.+.++..+...++.+..++| |.+..++.. .+ . +..+|+|+|. .+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 45679999999999999999998876555577777765 544444332 23 2 4678999994 23
Q ss_pred hhcCCCCcCCcceEEEecc
Q 007018 159 SEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 159 ~~~~~~~l~~l~~vViDEa 177 (621)
. ..+++.++.+||.-..
T Consensus 472 ~--~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 D--EGIDIAQCNLVILYEY 488 (696)
T ss_dssp C--CC---CCCSEEEEESC
T ss_pred h--cCCcCccCCEEEEeCC
Confidence 3 3688889998886433
No 334
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=59.53 E-value=40 Score=27.87 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=46.5
Q ss_pred EEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 269 ~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
.+||.+...-...+...++..|..+..+|++.+...|..-++.|....+++--+.|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtved 60 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVED 60 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCS
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeecc
Confidence 46777778888888888889999999999999999999999999887766654443
No 335
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=59.48 E-value=2.9 Score=38.23 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 007018 58 LSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (621)
..|.-+++.|++|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566789999999999984
No 336
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=59.28 E-value=42 Score=38.19 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=55.8
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHh-------hccCCCeEEEEEcCCChHHHHHHHh---------CCCCEEEECchHHHH
Q 007018 93 GVRALILSPTRDLALQTLKFTKEL-------GRYTDLRISLLVGGDSMESQFEELA---------QNPDIIIATPGRLMH 156 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l-------~~~~~l~~~~~~gg~~~~~~~~~l~---------~~~~IiV~Tpgrl~~ 156 (621)
+.++||.+|++.-+..+++.+.+. ....++.+..++|+....++...+. +...|+|+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 558999999999999998887752 2235788999999988877765543 24579999952
Q ss_pred hHhhcCCCCcCCcceEEE
Q 007018 157 HLSEVEDMSLKSVEYVVF 174 (621)
Q Consensus 157 ~l~~~~~~~l~~l~~vVi 174 (621)
+.. .+++.++.+||-
T Consensus 379 -ae~--GidIp~v~~VId 393 (773)
T 2xau_A 379 -AET--SLTIDGIVYVVD 393 (773)
T ss_dssp -HHH--TCCCTTEEEEEE
T ss_pred -HHh--CcCcCCeEEEEe
Confidence 232 688888887764
No 337
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.96 E-value=7.6 Score=39.76 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
....+++.||+|+|||...-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998543
No 338
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.92 E-value=1.1e+02 Score=30.81 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999997654
No 339
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=58.69 E-value=7.9 Score=41.15 Aligned_cols=38 Identities=24% Similarity=0.058 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|.-+++.|++|+|||...+-.+...... |.++++++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECC
Confidence 4558999999999997655444443332 5678888764
No 340
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.65 E-value=5.8 Score=37.21 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVP 80 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp 80 (621)
-.++.|+.|||||...+.-
T Consensus 7 i~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHH
Confidence 3679999999999865443
No 341
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.57 E-value=4.5 Score=36.73 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+++.|+.|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 342
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=58.50 E-value=5.7 Score=36.60 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|.-+.+.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999853
No 343
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.10 E-value=1.8 Score=42.78 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--hcCCcEEEEcCCCchHHHHH
Q 007018 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI--LSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 22 ~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~-~aip~i--l~g~dvv~~a~TGSGKT~af 77 (621)
.-+|+++|-.+.+.+.|.+.= ..|+.. .++..+ .-.+.+++.||.|+|||...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 457899987777777776421 222222 222221 11245999999999999753
No 344
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=57.39 E-value=5.1 Score=35.84 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007018 60 GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (621)
+.-+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999853
No 345
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.39 E-value=6.4 Score=36.01 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 007018 61 ADVVAMARTGSGKTAAF 77 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (621)
+-+++.||+|||||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.39 E-value=6.1 Score=36.93 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHHH
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~afl 78 (621)
.++.++.. ..+..|.-+++.|+.|||||...-
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 45666665 345567778999999999997543
No 347
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=57.37 E-value=5.3 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998544
No 348
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.29 E-value=6.5 Score=37.17 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCchHHHH
Q 007018 58 LSGADVVAMARTGSGKTAA 76 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~a 76 (621)
..|+-+.+.||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999974
No 349
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=57.21 E-value=5.2 Score=37.24 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (621)
..|+-++++|++|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 45678999999999999743
No 350
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.20 E-value=79 Score=26.10 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=41.2
Q ss_pred EecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 272 FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 272 F~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
-+..+.....+-+..+..|..+.++|..-+.+.|+...+.|++..+++--++|
T Consensus 85 ttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsd 137 (162)
T 2l82_A 85 TTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSD 137 (162)
T ss_dssp ECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESS
T ss_pred ecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCC
Confidence 33445556666666677899999999999999999999999998877655544
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.09 E-value=14 Score=34.88 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=29.6
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcC----CcEEEEcCCCchHHHHHH
Q 007018 33 NVFRAIKRKGYKVPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 33 ~l~~~l~~~g~~~ptpiQ~~aip~il~g----~dvv~~a~TGSGKT~afl 78 (621)
.+.+-|.=.|+. +... ..++..++.+ +.+++.||.|+|||..+.
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 566666545543 4444 5556666665 258999999999997654
No 352
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.74 E-value=19 Score=35.59 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcC
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~ 167 (621)
.+.++||.+++++-+..+++.+. .+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 283 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VASR--GLDIP 283 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHHT--TCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cccc--CCCcc
Confidence 45679999999998887655443 466777877665544332 35689999994 3333 68888
Q ss_pred CcceEEEec
Q 007018 168 SVEYVVFDE 176 (621)
Q Consensus 168 ~l~~vViDE 176 (621)
++++||.-.
T Consensus 284 ~~~~Vi~~~ 292 (337)
T 2z0m_A 284 LVEKVINFD 292 (337)
T ss_dssp CBSEEEESS
T ss_pred CCCEEEEec
Confidence 999888643
No 353
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=56.70 E-value=7.1 Score=37.25 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----ccc---cCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR---GIDI 332 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----aar---GlDi 332 (621)
.+.++||.++|+.-+..++..+... ++.+..++|+..... .......+..+|+|+|.- +.+ ++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999998888775 556666655422111 111223456789999932 112 4667
Q ss_pred CCCCEEEE
Q 007018 333 PLLDNVIN 340 (621)
Q Consensus 333 p~v~~VI~ 340 (621)
..+++||.
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 77777764
No 354
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=56.03 E-value=11 Score=36.27 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=18.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRL 85 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L 85 (621)
.+++.++.|+|||.+.+-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 488999999999988665544433
No 355
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=55.48 E-value=13 Score=30.45 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=32.7
Q ss_pred hccCCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCC
Q 007018 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDM 300 (621)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l 300 (621)
.+....++||+|.+-..+...+..|...|+. +..+.|++
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3556788999999998999999999999996 67777774
No 356
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=55.16 E-value=7.1 Score=36.37 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=16.8
Q ss_pred HHhcCCcEEEEcCCCchHHHHH
Q 007018 56 LILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 56 ~il~g~dvv~~a~TGSGKT~af 77 (621)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888999999999999853
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.00 E-value=5.8 Score=41.57 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHH
Q 007018 63 VVAMARTGSGKTAAFL 78 (621)
Q Consensus 63 vv~~a~TGSGKT~afl 78 (621)
++++||||||||....
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6889999999997644
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=55.00 E-value=5.8 Score=36.25 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 359
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=54.99 E-value=11 Score=38.78 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
|+-+++.|++|+|||...+-.+.+... .|.+++++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence 466899999999999876654444332 24568888764
No 360
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=54.97 E-value=5 Score=41.59 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCchHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~af 77 (621)
..|.-+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667899999999999753
No 361
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.89 E-value=6.5 Score=44.08 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=50.2
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHh--hccCCCeEEEEEcC--------CChHHHHHHH----hCCCCEEEECchHHHHhH
Q 007018 93 GVRALILSPTRDLALQTLKFTKEL--GRYTDLRISLLVGG--------DSMESQFEEL----AQNPDIIIATPGRLMHHL 158 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l--~~~~~l~~~~~~gg--------~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l 158 (621)
+.++||.++++..+..+.+.+... ....++.+..++|+ .+..++...+ .+..+|+|+|. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999998888764 12236888889988 6655544333 24678999994 23
Q ss_pred hhcCCCCcCCcceEEE
Q 007018 159 SEVEDMSLKSVEYVVF 174 (621)
Q Consensus 159 ~~~~~~~l~~l~~vVi 174 (621)
. ..+++.++.+||.
T Consensus 475 ~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 E--EGLDIKECNIVIR 488 (699)
T ss_dssp C--TTSCCCSCCCCEE
T ss_pred c--cCCccccCCEEEE
Confidence 3 2688889998884
No 362
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=54.88 E-value=9.8 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999753
No 363
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=54.84 E-value=5.9 Score=40.83 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 445688999999999974
No 364
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=54.58 E-value=5.4 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|+.|||||...-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 37899999999998543
No 365
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=54.47 E-value=6.4 Score=40.25 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999998543
No 366
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=54.44 E-value=6.2 Score=36.62 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q 007018 61 ADVVAMARTGSGKTAA 76 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~a 76 (621)
|-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 367
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.35 E-value=5.4 Score=35.44 Aligned_cols=17 Identities=6% Similarity=-0.126 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|+.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 368
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.27 E-value=5 Score=36.29 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|.-+.+.|+.|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45568899999999998544
No 369
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=54.13 E-value=28 Score=27.03 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=30.2
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
.++.+++|+|.+-..+...+..|...|+....+.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 56778999999988899999999999997544436643
No 370
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=54.13 E-value=43 Score=27.12 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=38.4
Q ss_pred HHHHHhccCCCcEEEEe------cChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHH
Q 007018 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312 (621)
Q Consensus 257 ~~l~~~~~~~~k~IVF~------~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F 312 (621)
..+.+.+. ..+++||. ++|..|..+..+|...++....+.-+.++..+......+
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH
Confidence 34444443 34688887 679999999999999998877776655666555544444
No 371
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=54.04 E-value=29 Score=30.87 Aligned_cols=82 Identities=12% Similarity=-0.020 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcccccC
Q 007018 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (621)
Q Consensus 251 k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~TdvaarGl 330 (621)
.....+.++.+....+.+++|.|.+...++.+-+.|-...-...+=|+-.... ......|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCS---------STTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCC---------CCCCCCEEEeCCCCC---
Confidence 55667778888888899999999999999999999988655555445421110 013467999875321
Q ss_pred CCCCCCEEEEcCCC
Q 007018 331 DIPLLDNVINWDFP 344 (621)
Q Consensus 331 Dip~v~~VI~~d~P 344 (621)
.-+.-+++||.+.-
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 12235799998853
No 372
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=54.01 E-value=6.7 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
....+++.|++|+|||...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4568999999999999754
No 373
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=53.23 E-value=13 Score=37.25 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHhcC-----CcEEEEcCCCchHHHHHHHHHHHHHhhh-------CCCCC----eEEEEEcchHHH-HHHHHHHHHH
Q 007018 53 TMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQH-------VPQGG----VRALILSPTRDL-ALQTLKFTKE 115 (621)
Q Consensus 53 aip~il~g-----~dvv~~a~TGSGKT~afllp~l~~L~~~-------~~~~g----~~~LIL~PtreL-a~Q~~~~~~~ 115 (621)
.+..++.| .-+++.|++|+|||...+-.+.+..... ....| .+++++.-...+ ..++...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34555532 4588999999999976554444321110 00123 678888765432 3444444555
Q ss_pred h
Q 007018 116 L 116 (621)
Q Consensus 116 l 116 (621)
+
T Consensus 166 ~ 166 (322)
T 2i1q_A 166 A 166 (322)
T ss_dssp H
T ss_pred c
Confidence 4
No 374
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.00 E-value=45 Score=33.99 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=52.4
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC-----cccc-cCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GIDIPL 334 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td-----vaar-GlDip~ 334 (621)
.+.++||.++++.-+..+.+.+... +..+..++|+.+... .......+..+|+|+|. .+.+ .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4678999999999998888888764 567777777766443 34556668889999994 2222 356667
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 375
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=52.89 E-value=6.4 Score=36.43 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|.-+++.|+.|||||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35679999999999998533
No 376
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=52.85 E-value=16 Score=43.83 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=40.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhC-------CCCCeEEEEEcchHHHHHHHHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGVRALILSPTRDLALQTLKFTKE 115 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~-------~~~g~~~LIL~PtreLa~Q~~~~~~~ 115 (621)
..++.|.-|||||.+..--++..|..+. .-.-.++|+|+=|+.-|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4499999999999988877777775421 11234799999999988888875544
No 377
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=52.60 E-value=15 Score=36.52 Aligned_cols=84 Identities=14% Similarity=0.039 Sum_probs=52.7
Q ss_pred hHHH-HHHHHHHHhccC--CCcEEEEecChhhHHHHHHHHHHC-----CCCceeecCCCCHHHHHHHHHHHhcCCceEEE
Q 007018 250 EKHA-ALLYMIREHISS--DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (621)
Q Consensus 250 ~k~~-~L~~~l~~~~~~--~~k~IVF~~t~~~ve~l~~~L~~~-----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV 321 (621)
.|.. .++-++...... +.++||.++|+.-+..++..+... ++.+..++|+.+.... .....+|||
T Consensus 143 GKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV 215 (300)
T 3fmo_B 143 GKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVI 215 (300)
T ss_dssp SHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEE
T ss_pred CccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEE
Confidence 3443 344555544332 337999999999999988888764 4556667766543211 134568999
Q ss_pred ecCcc------c-ccCCCCCCCEEEE
Q 007018 322 VTDVA------A-RGIDIPLLDNVIN 340 (621)
Q Consensus 322 ~Tdva------a-rGlDip~v~~VI~ 340 (621)
+|+-. . ..+++..+.+||.
T Consensus 216 ~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 216 GTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp ECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred ECHHHHHHHHHhcCCCChhhceEEEE
Confidence 99532 1 3466777777774
No 378
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=52.59 E-value=47 Score=27.50 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=37.9
Q ss_pred HHHHHHhccCCCcEEEEe------cChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHH
Q 007018 256 LYMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308 (621)
Q Consensus 256 ~~~l~~~~~~~~k~IVF~------~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~ 308 (621)
...+...+ ...+++||. ++|..|.....+|...|++...+.=..++..+...
T Consensus 6 ~~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 6 NLRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH
Confidence 34444444 356899999 68999999999999999887766555566655544
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=52.41 E-value=6.6 Score=37.37 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=16.4
Q ss_pred HhcCCcEEEEcCCCchHHHHH
Q 007018 57 ILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 57 il~g~dvv~~a~TGSGKT~af 77 (621)
+-.|+-+++.||.|||||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346778999999999999853
No 380
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=52.13 E-value=8.6 Score=43.54 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEEcCCCchHHHHH
Q 007018 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (621)
Q Consensus 53 aip~il~g~d--vv~~a~TGSGKT~af 77 (621)
.+..++.|.+ ++..|.||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677788976 667899999999874
No 381
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=52.01 E-value=54 Score=31.95 Aligned_cols=95 Identities=13% Similarity=0.166 Sum_probs=58.8
Q ss_pred CCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHH---HHhC--
Q 007018 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELAQ-- 142 (621)
Q Consensus 68 ~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~---~l~~-- 142 (621)
...|||..+ +.-++..+.. .+.++||.+.++..+..+...+... .++.+..+.|+.+..+... .+..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNP 163 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCT
T ss_pred cccCHHHHH-HHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 346788764 3344444432 3668999999999888887777652 1467778888887655433 3332
Q ss_pred CCCE-EEECchHHHHhHhhcCCCCcCCcceEEEecc
Q 007018 143 NPDI-IIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (621)
Q Consensus 143 ~~~I-iV~Tpgrl~~~l~~~~~~~l~~l~~vViDEa 177 (621)
.+.| +++|. .. . ..+++.....||+=+.
T Consensus 164 ~~~v~L~st~-~~----g--~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 164 SVKFIVLSVK-AG----G--FGINLTSANRVIHFDR 192 (271)
T ss_dssp TCCEEEEECC-TT----C--CCCCCTTCSEEEECSC
T ss_pred CCCEEEEehh-hh----c--CCcCcccCCEEEEECC
Confidence 3454 45543 22 1 3577888887776444
No 382
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=51.66 E-value=69 Score=36.51 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=59.2
Q ss_pred CchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhC----CCC
Q 007018 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ----NPD 145 (621)
Q Consensus 70 GSGKT~afllp~l~~L~~~~~~~g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~----~~~ 145 (621)
.|||..+ +.-++..+.. .|.++||.+..+..+..+.+.+... ++.+..+.|+.+..+....+.. +..
T Consensus 554 ~s~K~~~-L~~lL~~~~~----~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLKK----DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp TCHHHHH-HHHHHHHHTT----TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred cChHHHH-HHHHHHHHhh----CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 3666543 3334444332 4778999999998877777766654 5788899999887776555532 222
Q ss_pred --EEEECchHHHHhHhhcCCCCcCCcceEEEeccc
Q 007018 146 --IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (621)
Q Consensus 146 --IiV~Tpgrl~~~l~~~~~~~l~~l~~vViDEah 178 (621)
+++.+.... . ..+++.....||+=+.+
T Consensus 625 ~~v~LlSt~ag----g--~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 625 DFVFLLSTRAG----G--LGINLMTADTVVIFDSD 653 (800)
T ss_dssp CCCEEEEHHHH----T--TTCCCTTCCEEEESSCC
T ss_pred ceEEEEecccc----c--CCCCccccceEEEecCC
Confidence 344443322 2 36888888888774443
No 383
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=51.62 E-value=20 Score=38.50 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=47.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c----ccc-C-CCCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----ARG-I-DIPL 334 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a----arG-l-Dip~ 334 (621)
+.++||.++|+.-+..+...+... ++.+..++|+.+...+...+. ...+|+|+|.- + ..| + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777664 899999999986654432221 23689999942 2 222 3 6777
Q ss_pred CCEEEEc
Q 007018 335 LDNVINW 341 (621)
Q Consensus 335 v~~VI~~ 341 (621)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8888743
No 384
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=51.61 E-value=5.8 Score=35.63 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007018 60 GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (621)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999854
No 385
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=51.52 E-value=23 Score=40.40 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=47.4
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c----ccc-C-CCCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----ARG-I-DIPL 334 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a----arG-l-Dip~ 334 (621)
+.++||.++++.-+..+...+... ++.+..+||+.+...+...+. +..+|+|+|.- + .++ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777664 899999999986654432221 35789999942 2 222 3 5566
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788874
No 386
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=51.09 E-value=64 Score=32.45 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=51.3
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH----CCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCcc------cccCCCCC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA------ARGIDIPL 334 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~~----~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdva------arGlDip~ 334 (621)
.+.++||.++++.-+..+...+.. .++.+..++|+.+.......+. ..+|+|+|.-. ...+++..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456899999999999888887765 3678888999988766554433 46799999421 22355667
Q ss_pred CCEEEE
Q 007018 335 LDNVIN 340 (621)
Q Consensus 335 v~~VI~ 340 (621)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 788774
No 387
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.05 E-value=8.7 Score=31.74 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.7
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCC
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (621)
+.++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 35677899999999999999999999999988887774
No 388
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=51.02 E-value=58 Score=26.73 Aligned_cols=55 Identities=5% Similarity=0.001 Sum_probs=38.6
Q ss_pred HHHHHHHhccCCCcEEEEec------ChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHH
Q 007018 255 LLYMIREHISSDQQTLIFVS------TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (621)
Q Consensus 255 L~~~l~~~~~~~~k~IVF~~------t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~ 310 (621)
+...+++.+ ...+++||.. +|-.|.....+|...|++...+.=..+...+.....
T Consensus 7 ~~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 7 LKDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 344555554 3568999987 599999999999999988776654445555554433
No 389
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=50.97 E-value=15 Score=33.42 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=16.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLN 86 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~ 86 (621)
-+.+.|+.|||||.. +.-++..|.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367899999999974 333344443
No 390
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=50.89 E-value=5.2 Score=36.28 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|.-+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999998543
No 391
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=50.64 E-value=15 Score=41.16 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=48.8
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHHhCCCCEEEECchHHHHhHhhcCCCCcCCcceE
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~v 172 (621)
+.++||.+||++-+.++++.+++. ++.+..++|+.+..+. ..++.+|+|+|. .+.. .+++. +++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~V 460 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDSV 460 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcEE
Confidence 558999999999999988877764 5889999998776542 235669999995 3333 46664 7766
Q ss_pred E
Q 007018 173 V 173 (621)
Q Consensus 173 V 173 (621)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 392
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=50.22 E-value=35 Score=38.26 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=54.3
Q ss_pred EEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChH---HHHHHHh---CCCCEEEECchHHHHhHhhcCCCCcCCc
Q 007018 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME---SQFEELA---QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (621)
Q Consensus 96 ~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~---~~~~~l~---~~~~IiV~Tpgrl~~~l~~~~~~~l~~l 169 (621)
.+|+++|+.-+.++.+.+.+. ++.+..++|+.... .+...+. +..+|+|||. .+.. .+++ ++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~--GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGM--GLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGS--SCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHC--CcCc-Cc
Confidence 467799998888888877764 57899999998876 3444554 4579999995 3332 6888 89
Q ss_pred ceEEEeccccc
Q 007018 170 EYVVFDEADCL 180 (621)
Q Consensus 170 ~~vViDEah~l 180 (621)
.+||+-...+.
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99998887654
No 393
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=50.12 E-value=22 Score=30.04 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=34.6
Q ss_pred HHHHHHHhccCC-CcEEEEe-cChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 255 LLYMIREHISSD-QQTLIFV-STKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 255 L~~~l~~~~~~~-~k~IVF~-~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
+...+... ..+ .++||+| .+-..+...+..|...|+++..+.|++.
T Consensus 78 ~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 78 IYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 33444332 345 7899999 5777888999999999998888888864
No 394
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.99 E-value=6.9 Score=37.65 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q 007018 20 SKSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 20 ~~~~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~il--~g~dvv~~a~TGSGKT~af 77 (621)
...-+|++++-.+.+...+...- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 34568999877777766665431 111 12222211 1245999999999999753
No 395
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=49.79 E-value=8.6 Score=38.01 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 69999999999997644
No 396
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=49.52 E-value=10 Score=40.39 Aligned_cols=68 Identities=7% Similarity=0.066 Sum_probs=45.8
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH-hCCCCEEEECchHHHHhHhhcCCCCcCCcce
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l-~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~ 171 (621)
+.++||.||++.-+..+++.++.. ++.+..++|..... .+..+ .+..+|+|+|. .+.. .+++.. .+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~-----v~~~--GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTD-----ISEM--GANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESS-----CC-----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHH-HHhhccCCCceEEEECC-----hHHh--CeecCC-CE
Confidence 457999999999999988888776 57888888754322 22222 35689999994 2222 567776 54
Q ss_pred EE
Q 007018 172 VV 173 (621)
Q Consensus 172 vV 173 (621)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 397
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=49.51 E-value=14 Score=44.10 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEec-----C
Q 007018 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----D 324 (621)
Q Consensus 250 ~k~~~L~~~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~T-----d 324 (621)
.|.......+...+..+.++||.++|+.-+...+..+......+..++|+.+ .+++.+|+|+| +
T Consensus 211 GKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~ 279 (1108)
T 3l9o_A 211 GKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRS 279 (1108)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHH
Confidence 3544433344444456889999999999999999999887668889999876 34678899999 3
Q ss_pred cccccCC-CCCCCEEEE
Q 007018 325 VAARGID-IPLLDNVIN 340 (621)
Q Consensus 325 vaarGlD-ip~v~~VI~ 340 (621)
.+.+|-. +.++.+||.
T Consensus 280 ~L~~~~~~l~~l~lVVI 296 (1108)
T 3l9o_A 280 MLYRGSEVMREVAWVIF 296 (1108)
T ss_dssp HHHHCSSHHHHEEEEEE
T ss_pred HHHcCccccccCCEEEE
Confidence 4444433 556677763
No 398
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.23 E-value=6.7 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998643
No 399
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.18 E-value=7.4 Score=35.45 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|++|||||...-
T Consensus 4 ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 46789999999998543
No 400
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=48.48 E-value=16 Score=36.65 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
|.-+.+.||+|||||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4457789999999997533
No 401
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=48.40 E-value=7.9 Score=34.24 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q 007018 62 DVVAMARTGSGKTAA 76 (621)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (621)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 368899999999975
No 402
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.25 E-value=12 Score=30.82 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=33.1
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCC
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (621)
+..+.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 35677899999999899999999999999888888874
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.16 E-value=12 Score=36.44 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=17.8
Q ss_pred hcCCcEEEEcCCCchHHHHHH
Q 007018 58 LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 58 l~g~dvv~~a~TGSGKT~afl 78 (621)
+.|+.+++.|++|||||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 348999999999999998643
No 404
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=47.85 E-value=8.3 Score=39.64 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.||+|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 405
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=47.81 E-value=39 Score=38.71 Aligned_cols=54 Identities=9% Similarity=-0.049 Sum_probs=41.7
Q ss_pred CCCcEEEEecChhhHHHHHHHH----HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L----~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
.+.+++|.++|+.-|...++.+ ...|+.+..++|+++...|.... .++|+|+|+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 4678999999998877665554 44699999999999987655432 378999996
No 406
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=47.38 E-value=21 Score=29.19 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=34.4
Q ss_pred HHHHhccCCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCCC
Q 007018 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (621)
Q Consensus 258 ~l~~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (621)
.+.. +..+.+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 51 ~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 51 FMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3443 456788999999988999999999999996 667778753
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=47.30 E-value=7.7 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.||||||||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47799999999998653
No 408
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.25 E-value=8.1 Score=35.66 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+-+++.|+.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998543
No 409
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.10 E-value=9.1 Score=34.84 Aligned_cols=20 Identities=20% Similarity=0.230 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.+.-+++.|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998543
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.03 E-value=8.2 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=11.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|+-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999753
No 411
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.95 E-value=8.2 Score=35.06 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 412
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=46.65 E-value=10 Score=40.29 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.||+|+|||....
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 679999999999998654
No 413
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.32 E-value=10 Score=35.02 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHhcCCcEEEEcCCCchHHHHH
Q 007018 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 46 ptpiQ~~aip~il~g~dvv~~a~TGSGKT~af 77 (621)
.+..++..+ ....|.-+++.|+.|||||...
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 444454432 1234566889999999999754
No 414
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=45.69 E-value=23 Score=32.89 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=45.3
Q ss_pred CCcEEEEecChhhHHHHHHHHHHC--------CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-----ccc-cCC
Q 007018 266 DQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR-GID 331 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~l~~~L~~~--------g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-----aar-GlD 331 (621)
+.++||.++|+.-+..+++.+... ++.+..++|+.+....... + ....+|+|+|.- +.+ .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999998888877653 5677788888654332111 1 235689999841 122 234
Q ss_pred CCCCCEEEE
Q 007018 332 IPLLDNVIN 340 (621)
Q Consensus 332 ip~v~~VI~ 340 (621)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 555555553
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.61 E-value=8.2 Score=35.83 Aligned_cols=19 Identities=26% Similarity=0.102 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445778999999999753
No 416
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=45.39 E-value=8.7 Score=34.90 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|.-+++.|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34568899999999998543
No 417
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=45.20 E-value=7.2 Score=36.40 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHHH
Q 007018 60 GADVVAMARTGSGKTAA 76 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~a 76 (621)
|.-+.+.|++|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45578999999999974
No 418
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=45.16 E-value=9.2 Score=37.44 Aligned_cols=54 Identities=13% Similarity=0.014 Sum_probs=31.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--cCCcEEEEcCCCchHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g~~~ptpiQ~~aip~il--~g~dvv~~a~TGSGKT~af 77 (621)
..-+|+++.-.+.+...+...-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456788888777777776643110 0 0011222211 1245999999999999753
No 419
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=45.14 E-value=9 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678999999999753
No 420
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.99 E-value=5 Score=38.93 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH--hcCCcEEEEcCCCchHHHHHH
Q 007018 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLI--LSGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 21 ~~~~f~~l~L~~~l~~~l~~~g--~~~ptpiQ~~aip~i--l~g~dvv~~a~TGSGKT~afl 78 (621)
....|+++.-.+...+.|...- +..| +.+..+ ...+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYP-----ERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCH-----HHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCh-----HHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 3457888765555555554310 0000 111111 123569999999999997643
No 421
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=44.74 E-value=13 Score=30.09 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=32.1
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCC
Q 007018 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (621)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (621)
.++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 4567899999999899999999999999888888874
No 422
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=44.34 E-value=9.5 Score=34.72 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+.+.|++|||||...-
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997543
No 423
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=44.33 E-value=11 Score=34.65 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999853
No 424
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=44.26 E-value=11 Score=35.26 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.|.-+.+.||+|||||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568899999999997544
No 425
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=44.02 E-value=17 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.-+.+.|++|||||...-
T Consensus 101 ~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 347789999999998543
No 426
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=43.93 E-value=9.9 Score=35.40 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 427
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=43.84 E-value=9.8 Score=35.65 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHH
Q 007018 61 ADVVAMARTGSGKTAAF 77 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (621)
.-+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999854
No 428
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=43.69 E-value=11 Score=34.32 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 429
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=43.67 E-value=11 Score=36.19 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCceeeeccCCCCCCCceEEEEEcchhhHHHHHHHHHHHhccCCCcEEEEecC
Q 007018 213 LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST 275 (621)
Q Consensus 213 l~~~~~~~l~~p~~i~~~~~~~~~~~~~~~~~~~~~~~k~~~L~~~l~~~~~~~~k~IVF~~t 275 (621)
...++++.+.+|.++-+|.....-+ ..-...+..++.+.....+.++|++..
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD-----------~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALD-----------SKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSC-----------HHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCC-----------HHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4557788888888887776543322 122344555555543333567777654
No 430
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=43.66 E-value=13 Score=30.22 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=32.0
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCC
Q 007018 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (621)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l 300 (621)
.++.+++|+|.+-..+...+..|...|+++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4567899999998889999999999999888888874
No 431
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.63 E-value=8.7 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556899999999999853
No 432
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=43.61 E-value=22 Score=32.32 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHh
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLN 86 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~ 86 (621)
-+++.|+.|||||.. +..++..+.
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhcc
Confidence 477899999999974 333344443
No 433
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=43.54 E-value=34 Score=29.80 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=30.5
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCCC
Q 007018 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (621)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (621)
..+.++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45678999999988888999999999995 778888863
No 434
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=43.53 E-value=11 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998543
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.48 E-value=11 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 436
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=43.47 E-value=19 Score=28.74 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=31.2
Q ss_pred cCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 264 ~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
.+ .+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 78999999988899999999999999777777753
No 437
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=43.39 E-value=5.3 Score=37.11 Aligned_cols=19 Identities=26% Similarity=0.064 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+.+.|++|||||...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999753
No 438
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=43.32 E-value=10 Score=34.30 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.|+.|||||...-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 439
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.30 E-value=13 Score=33.82 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
.+.+.||.|||||..+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 440
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.25 E-value=10 Score=33.65 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+-+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358899999999998543
No 441
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.21 E-value=9.7 Score=34.31 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=43.13 E-value=9.5 Score=39.31 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=0.0
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
.++.|+||+|||..+
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 443
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=42.99 E-value=12 Score=37.65 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.|.-+.+.||+|||||...
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5677999999999999743
No 444
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=42.95 E-value=66 Score=35.94 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=53.9
Q ss_pred CCeEEEEEcchHHHHHHHHHHHHHhhcc--------------------------------CCCeEEEEEcCCChHHHHHH
Q 007018 92 GGVRALILSPTRDLALQTLKFTKELGRY--------------------------------TDLRISLLVGGDSMESQFEE 139 (621)
Q Consensus 92 ~g~~~LIL~PtreLa~Q~~~~~~~l~~~--------------------------------~~l~~~~~~gg~~~~~~~~~ 139 (621)
.+.++||.+|++.-+..+++.+...... ....+..++||-+..++...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3567999999999999988887764321 01347888999887665443
Q ss_pred H----hCCCCEEEECchHHHHhHhhcCCCCcCCcceEEEe
Q 007018 140 L----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (621)
Q Consensus 140 l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~l~~vViD 175 (621)
. .+..+|+|+|. .+.. .+++..+.+||-+
T Consensus 331 ~~~f~~g~~~vlvaT~-----~l~~--Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP-----TLAA--GVNLPARTVIIGD 363 (715)
T ss_dssp HHHHHTTCSCEEEECG-----GGGG--SSCCCBSEEEECC
T ss_pred HHHHHcCCCeEEEECh-----HHhc--ccCCCceEEEEeC
Confidence 3 35789999994 2332 6788888776643
No 445
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.81 E-value=12 Score=37.59 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcch
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Pt 102 (621)
+++.|+.|||||...- .|.... .+.++.||.|+
T Consensus 7 ~~i~G~~GaGKTTll~-----~l~~~~--~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR-----HILNEQ--HGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHH-----HHHHSC--CCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHH-----HHHhhc--CCCcEEEEEec
Confidence 6789999999998532 222211 35667777774
No 446
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=42.71 E-value=10 Score=35.80 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007018 60 GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (621)
..-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999853
No 447
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=42.53 E-value=12 Score=33.69 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.-+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 448
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=42.37 E-value=16 Score=33.52 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCcEEEEecChhhHHH-HHHHHHHC---CCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 266 DQQTLIFVSTKHHVEF-LNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 266 ~~k~IVF~~t~~~ve~-l~~~L~~~---g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
+.++||++++..-++. +.+.+... ++.+..++|+.+...+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999988777 55555443 677888888754332211111 2467888884
No 449
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=42.28 E-value=15 Score=33.86 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.1
Q ss_pred cCCcceEEEeccccc--cCCChHHHHHHHHHhcccCCcEEEEEccCc
Q 007018 166 LKSVEYVVFDEADCL--FGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (621)
Q Consensus 166 l~~l~~vViDEah~l--~~~gf~~~l~~il~~l~~~~q~ll~SATl~ 210 (621)
..+.+++|+||+..+ .+..|.+.+.+++.. ...+++.++|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 566789999998877 344566666666653 233566677753
No 450
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=42.25 E-value=11 Score=35.14 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 451
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=42.17 E-value=21 Score=36.25 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=25.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHHHhhhC-CCCCeEEEEEcchH
Q 007018 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTR 103 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afllp~l~~L~~~~-~~~g~~~LIL~Ptr 103 (621)
.-+++.|++|||||...+-.+........ ...+.+++++.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34789999999999865544333222100 01255788887654
No 452
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.89 E-value=21 Score=36.00 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+++.+++|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999997654
No 453
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=41.82 E-value=24 Score=30.68 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=32.9
Q ss_pred HhccCCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCC
Q 007018 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDM 300 (621)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l 300 (621)
..+..+.++||||.+...+...+..|...|+. +..+.|++
T Consensus 51 ~~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 51 SSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred hcCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 34566788999999999999999999999996 66677773
No 454
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.76 E-value=14 Score=37.30 Aligned_cols=18 Identities=28% Similarity=0.281 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997543
No 455
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.73 E-value=11 Score=34.59 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.7
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999853
No 456
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.66 E-value=12 Score=33.27 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
+.+++.|..|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998644
No 457
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=41.57 E-value=12 Score=34.99 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
..-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998543
No 458
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=41.52 E-value=43 Score=33.70 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
+.+.|++|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 459
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=41.49 E-value=11 Score=34.70 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 460
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=41.48 E-value=9.2 Score=37.93 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-++++|+.|||||...-
T Consensus 35 livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEECCTTSCTHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998543
No 461
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=41.47 E-value=10 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999974
No 462
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=41.42 E-value=11 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-+++.|+.|||||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3789999999999743
No 463
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.16 E-value=11 Score=34.67 Aligned_cols=15 Identities=40% Similarity=0.353 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
+.+.|+.|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999853
No 464
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=40.95 E-value=12 Score=33.14 Aligned_cols=17 Identities=18% Similarity=0.092 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 465
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=40.78 E-value=64 Score=36.94 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=49.9
Q ss_pred CCCcEEEEecChhhHHHHHHHHH----HCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecCc-c-----c-------
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----A------- 327 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L~----~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Tdv-a-----a------- 327 (621)
.+.+++|.++|+.-|...++.+. ..|+.+.+++|+++...|.... .++|+++|+- + .
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 46689999999988876665554 4699999999999987665432 3789999951 1 1
Q ss_pred ccCCCCCCCEEE
Q 007018 328 RGIDIPLLDNVI 339 (621)
Q Consensus 328 rGlDip~v~~VI 339 (621)
..++...+.++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 235666777765
No 466
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=40.71 E-value=5.8 Score=42.23 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CeEEEEEcchHHHHHHHHHHHHHhhccCCCeEEEEEcCCChHHHHHHH----hCCCCEEEECchHHHHhHhhcCCCCcCC
Q 007018 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (621)
Q Consensus 93 g~~~LIL~PtreLa~Q~~~~~~~l~~~~~l~~~~~~gg~~~~~~~~~l----~~~~~IiV~Tpgrl~~~l~~~~~~~l~~ 168 (621)
+.++||.||++.-+..+++.+... +..+..++|+.+..+....+ .+..+|+|||. .+.. .+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~--GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCAR--GIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cccc--CCcccc
Confidence 457999999999988888877665 46778888876654433222 34678999994 3332 678888
Q ss_pred cceEE
Q 007018 169 VEYVV 173 (621)
Q Consensus 169 l~~vV 173 (621)
+.+||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 88876
No 467
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=40.67 E-value=12 Score=34.45 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.-+++.|+.|||||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998543
No 468
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=40.62 E-value=31 Score=40.26 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHhccC-----CCcEEEEecChhhHHHHHHHHHHC----CCCceeecCCCCHHHHHHHHHHHhcCCceE
Q 007018 249 EEKHAALLYMIREHISS-----DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (621)
Q Consensus 249 ~~k~~~L~~~l~~~~~~-----~~k~IVF~~t~~~ve~l~~~L~~~----g~~~~~l~g~l~~~~R~~~l~~F~~g~~~I 319 (621)
..|.-..+..+...+.. +.++||.++|+.-+..+...+... ++.+..+||+.+...+...+. +..+|
T Consensus 274 sGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~I 349 (936)
T 4a2w_A 274 SGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDI 349 (936)
T ss_dssp SCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSE
T ss_pred chHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCE
Confidence 34554444444444433 678999999998888877777654 899999999986554322221 24689
Q ss_pred EEecCc-c----ccc-C-CCCCCCEEEE
Q 007018 320 LIVTDV-A----ARG-I-DIPLLDNVIN 340 (621)
Q Consensus 320 LV~Tdv-a----arG-l-Dip~v~~VI~ 340 (621)
+|+|.- + .++ + .+..+++||.
T Consensus 350 vI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 350 IVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp EEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred EEecHHHHHHHHHcCccccccCCCEEEE
Confidence 999942 2 222 2 4556788774
No 469
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=40.40 E-value=12 Score=37.52 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.|++|+|||...-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999997543
No 470
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=40.22 E-value=22 Score=30.34 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=32.9
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHCCCC-ceeecCCCC
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~-~~~l~g~l~ 301 (621)
+..+.++||+|.+-..+...+..|...|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456788999999988899999999999996 777888853
No 471
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=39.75 E-value=13 Score=34.22 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999853
No 472
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.54 E-value=17 Score=33.51 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=21.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEcchH
Q 007018 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (621)
Q Consensus 63 vv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~Ptr 103 (621)
+++.|++|||||.-.. +|... +..++++....
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHH-----HHHhc----CCCeEEEecCC
Confidence 6889999999997443 33322 34577877744
No 473
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=39.45 E-value=11 Score=37.73 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||+|||||..
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466789999999999984
No 474
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=39.32 E-value=13 Score=35.66 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 007018 60 GADVVAMARTGSGKTAAF 77 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~af 77 (621)
+.-+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999753
No 475
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=39.31 E-value=13 Score=33.63 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHH
Q 007018 63 VVAMARTGSGKTAAF 77 (621)
Q Consensus 63 vv~~a~TGSGKT~af 77 (621)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999753
No 476
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=39.03 E-value=39 Score=34.61 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 64 v~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
+..+.-|.|||...+..+... .. .|.++|++=
T Consensus 148 v~s~KGGvGKTT~a~nLA~~L-a~----~g~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAIAH-AN----MGKKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHHHH-HH----HTCCEEEEE
T ss_pred EECCCCCChHHHHHHHHHHHH-Hh----CCCCEEEEE
Confidence 345689999998766444432 22 266777765
No 477
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=38.90 E-value=14 Score=34.06 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAF 77 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~af 77 (621)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567999999999999853
No 478
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=38.87 E-value=15 Score=34.71 Aligned_cols=18 Identities=33% Similarity=0.329 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp TTCCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567788999999999984
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=38.39 E-value=15 Score=35.90 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999984
No 480
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=38.17 E-value=23 Score=36.34 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
-+.+.|++|||||...-
T Consensus 159 vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37789999999998543
No 481
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=38.08 E-value=15 Score=35.02 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999974
No 482
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=38.04 E-value=36 Score=27.91 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.9
Q ss_pred ccCCCcEEEEecChhhHHHHHHHHHHCCCCceeecCCCC
Q 007018 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (621)
Q Consensus 263 ~~~~~k~IVF~~t~~~ve~l~~~L~~~g~~~~~l~g~l~ 301 (621)
+.++.+++|+|.+-..+...+..|...|+....+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 456788999999998999999999999997777778853
No 483
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.00 E-value=13 Score=34.54 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=14.0
Q ss_pred cEEEEcCCCchHHHHHH
Q 007018 62 DVVAMARTGSGKTAAFL 78 (621)
Q Consensus 62 dvv~~a~TGSGKT~afl 78 (621)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 484
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.00 E-value=14 Score=35.00 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.+..+++.|++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34579999999999998543
No 485
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=37.88 E-value=15 Score=35.48 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 486
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=37.85 E-value=14 Score=33.51 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 007018 63 VVAMARTGSGKTAAFL 78 (621)
Q Consensus 63 vv~~a~TGSGKT~afl 78 (621)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998543
No 487
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=37.78 E-value=13 Score=33.85 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-+.+.|++|||||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999853
No 488
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=37.63 E-value=15 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998543
No 489
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.54 E-value=15 Score=36.24 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466688999999999984
No 490
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=37.52 E-value=11 Score=33.79 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 007018 59 SGADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~afl 78 (621)
.+.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998543
No 491
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=37.50 E-value=14 Score=35.85 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 007018 61 ADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~afl 78 (621)
.-+++.|+.|||||...-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 358899999999998543
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=37.19 E-value=15 Score=34.32 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 007018 62 DVVAMARTGSGKTAAF 77 (621)
Q Consensus 62 dvv~~a~TGSGKT~af 77 (621)
-.++.|++|||||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4678999999999753
No 493
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=36.93 E-value=11 Score=36.32 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456688999999999984
No 494
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=36.85 E-value=17 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 007018 60 GADVVAMARTGSGKTAAFL 78 (621)
Q Consensus 60 g~dvv~~a~TGSGKT~afl 78 (621)
...+++.|+.|||||...-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468999999999998543
No 495
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=36.63 E-value=19 Score=33.75 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHH
Q 007018 63 VVAMARTGSGKTAAFL 78 (621)
Q Consensus 63 vv~~a~TGSGKT~afl 78 (621)
+++.||+||||+...-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997543
No 496
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=36.59 E-value=16 Score=35.45 Aligned_cols=18 Identities=28% Similarity=0.494 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHH
Q 007018 59 SGADVVAMARTGSGKTAA 76 (621)
Q Consensus 59 ~g~dvv~~a~TGSGKT~a 76 (621)
.|.-+.+.||.|||||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999984
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=36.57 E-value=18 Score=38.13 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=22.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHHHhhhCCCCCeEEEEEc
Q 007018 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (621)
Q Consensus 62 dvv~~a~TGSGKT~afllp~l~~L~~~~~~~g~~~LIL~ 100 (621)
.+++.|++|+|||......+. .+.. .|.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~-~l~~----~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLAR-YIQK----RGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHH-HHHH----HHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEe
Confidence 588999999999976554333 2222 245566665
No 498
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=36.56 E-value=15 Score=40.57 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=13.9
Q ss_pred cEEEEcCCCchHHHH
Q 007018 62 DVVAMARTGSGKTAA 76 (621)
Q Consensus 62 dvv~~a~TGSGKT~a 76 (621)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999974
No 499
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=36.49 E-value=75 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=41.9
Q ss_pred CCCcEEEEecChhhHHHHHHHH----HHCCCCceeecCCCCHHHHHHHHHHHhcCCceEEEecC
Q 007018 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (621)
Q Consensus 265 ~~~k~IVF~~t~~~ve~l~~~L----~~~g~~~~~l~g~l~~~~R~~~l~~F~~g~~~ILV~Td 324 (621)
.+.+++|.++|..-+...++.+ ...|+.+.+++|+++...|.... .++|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3668999999988876655554 44699999999999987665443 378999995
No 500
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.47 E-value=15 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.022 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 007018 61 ADVVAMARTGSGKTAAF 77 (621)
Q Consensus 61 ~dvv~~a~TGSGKT~af 77 (621)
.-+.+.|+.|||||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34778999999999754
Done!