Query 007019
Match_columns 621
No_of_seqs 413 out of 1498
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:47:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007019.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007019hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 3.7E-40 8.1E-45 347.1 29.6 348 9-619 1-352 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 6.2E-32 1.4E-36 280.9 28.2 114 500-619 171-284 (321)
3 PRK09903 putative transporter 100.0 3.7E-30 8E-35 267.6 30.3 110 503-619 165-274 (314)
4 COG0679 Predicted permeases [G 100.0 1.2E-29 2.6E-34 264.5 30.8 144 7-152 2-147 (311)
5 KOG2722 Predicted membrane pro 97.9 1.6E-05 3.5E-10 85.4 7.0 113 13-126 16-132 (408)
6 TIGR00841 bass bile acid trans 97.1 0.0011 2.3E-08 69.4 7.5 70 548-619 12-84 (286)
7 TIGR00832 acr3 arsenical-resis 96.8 0.011 2.3E-07 63.4 11.9 110 506-619 5-120 (328)
8 KOG2722 Predicted membrane pro 96.4 0.0011 2.4E-08 71.7 0.9 111 507-618 243-366 (408)
9 COG0385 Predicted Na+-dependen 96.3 0.019 4.1E-07 61.5 9.8 108 506-618 5-113 (319)
10 PF01758 SBF: Sodium Bile acid 96.2 0.013 2.9E-07 57.3 7.2 71 549-619 3-75 (187)
11 TIGR00841 bass bile acid trans 94.8 0.37 7.9E-06 50.6 12.5 137 7-150 133-274 (286)
12 PF13593 DUF4137: SBF-like CPA 91.7 0.55 1.2E-05 50.2 7.8 102 511-619 1-109 (313)
13 PF05684 DUF819: Protein of un 90.9 3.8 8.3E-05 45.1 13.4 74 11-85 22-98 (378)
14 TIGR00844 c_cpa1 na(+)/h(+) an 90.3 2.7 5.9E-05 50.5 12.3 94 511-613 39-139 (810)
15 PF13593 DUF4137: SBF-like CPA 85.4 14 0.00029 39.7 12.9 112 14-128 164-283 (313)
16 PF04172 LrgB: LrgB-like famil 79.8 12 0.00026 38.5 9.4 94 506-605 16-110 (215)
17 COG0798 ACR3 Arsenite efflux p 79.3 32 0.0007 37.7 12.9 129 2-134 172-311 (342)
18 PF03601 Cons_hypoth698: Conse 77.5 18 0.00038 38.9 10.3 89 509-604 25-115 (305)
19 TIGR01625 YidE_YbjL_dupl AspT/ 70.8 34 0.00073 33.4 9.5 69 532-603 45-116 (154)
20 TIGR00932 2a37 transporter, mo 69.9 40 0.00087 34.6 10.5 93 500-600 6-100 (273)
21 TIGR00832 acr3 arsenical-resis 69.2 29 0.00064 37.4 9.7 48 80-129 257-304 (328)
22 PRK10711 hypothetical protein; 68.2 24 0.00052 36.7 8.3 94 506-605 27-121 (231)
23 TIGR00659 conserved hypothetic 67.9 28 0.00062 36.1 8.8 94 506-605 26-120 (226)
24 COG1346 LrgB Putative effector 66.6 23 0.0005 36.9 7.7 104 505-618 28-131 (230)
25 COG5505 Predicted integral mem 66.6 92 0.002 34.2 12.4 138 14-155 31-175 (384)
26 PF06826 Asp-Al_Ex: Predicted 66.3 49 0.0011 32.7 9.8 84 517-604 30-116 (169)
27 PRK03818 putative transporter; 65.5 36 0.00078 39.4 10.0 93 516-613 36-130 (552)
28 PRK04288 antiholin-like protei 64.0 56 0.0012 34.1 10.1 95 506-605 32-126 (232)
29 TIGR03802 Asp_Ala_antiprt aspa 62.6 39 0.00084 39.3 9.5 73 517-601 42-116 (562)
30 PRK03659 glutathione-regulated 59.9 32 0.0007 40.0 8.4 86 508-601 235-320 (601)
31 PF03812 KdgT: 2-keto-3-deoxyg 58.2 20 0.00044 38.8 5.8 55 546-602 47-101 (314)
32 PRK03562 glutathione-regulated 57.3 62 0.0013 38.0 10.1 92 502-601 21-113 (621)
33 COG0385 Predicted Na+-dependen 56.7 1.8E+02 0.0039 31.8 12.7 127 11-144 164-297 (319)
34 COG3329 Predicted permease [Ge 55.1 1.1E+02 0.0024 33.5 10.6 110 498-611 204-319 (372)
35 PRK03562 glutathione-regulated 55.0 55 0.0012 38.4 9.2 82 511-600 241-322 (621)
36 TIGR00783 ccs citrate carrier 53.1 74 0.0016 35.1 9.2 100 17-117 207-315 (347)
37 PRK04972 putative transporter; 52.7 3.4E+02 0.0074 31.7 15.0 69 532-604 434-505 (558)
38 PRK12460 2-keto-3-deoxyglucona 52.2 29 0.00063 37.6 5.9 80 513-603 169-249 (312)
39 PF05982 DUF897: Domain of unk 50.3 1.3E+02 0.0029 33.0 10.4 107 501-611 167-275 (327)
40 PRK10669 putative cation:proto 47.4 1E+02 0.0022 35.5 9.6 91 502-600 22-113 (558)
41 PRK04972 putative transporter; 46.1 1.1E+02 0.0024 35.6 9.8 83 518-613 45-129 (558)
42 PRK05326 potassium/proton anti 45.6 81 0.0018 36.3 8.6 92 503-600 23-116 (562)
43 PLN03159 cation/H(+) antiporte 45.1 1.5E+02 0.0033 36.2 11.0 88 509-598 65-158 (832)
44 TIGR00831 a_cpa1 Na+/H+ antipo 42.4 1.4E+02 0.003 34.4 9.7 94 509-613 20-115 (525)
45 PRK03659 glutathione-regulated 39.7 1.8E+02 0.004 33.9 10.3 90 504-601 23-113 (601)
46 COG3329 Predicted permease [Ge 36.8 5.8E+02 0.013 28.2 12.5 113 13-130 15-130 (372)
47 TIGR00698 conserved hypothetic 34.4 2.5E+02 0.0054 30.8 9.6 47 533-581 269-316 (335)
48 TIGR00698 conserved hypothetic 34.3 2.1E+02 0.0046 31.4 9.1 89 510-604 31-121 (335)
49 PLN03159 cation/H(+) antiporte 32.8 2.2E+02 0.0047 34.9 9.7 32 36-67 313-344 (832)
50 TIGR00783 ccs citrate carrier 31.5 3.8E+02 0.0083 29.7 10.5 90 511-607 205-300 (347)
51 COG0025 NhaP NhaP-type Na+/H+ 31.2 3.4E+02 0.0074 30.5 10.3 101 507-613 27-127 (429)
52 PRK12585 putative monovalent c 31.2 2.7E+02 0.0058 28.6 8.5 63 533-596 29-91 (197)
53 TIGR03802 Asp_Ala_antiprt aspa 30.9 2E+02 0.0043 33.5 8.7 68 533-604 440-510 (562)
54 COG0475 KefB Kef-type K+ trans 30.8 2.5E+02 0.0054 31.1 9.1 94 504-603 23-119 (397)
55 COG2855 Predicted membrane pro 30.5 2.2E+02 0.0049 31.3 8.4 86 512-604 39-124 (334)
56 COG0798 ACR3 Arsenite efflux p 30.1 3.3E+02 0.0071 30.2 9.6 102 504-615 11-124 (342)
57 KOG2718 Na+-bile acid cotransp 29.7 34 0.00074 38.0 2.2 69 548-616 117-186 (371)
58 KOG4821 Predicted Na+-dependen 29.6 66 0.0014 33.6 4.0 51 570-620 81-134 (287)
59 PF11299 DUF3100: Protein of u 29.3 1.6E+02 0.0035 31.0 6.8 92 507-603 18-114 (241)
60 PRK03818 putative transporter; 29.2 3.1E+02 0.0066 32.0 9.8 91 517-613 407-504 (552)
61 PF03390 2HCT: 2-hydroxycarbox 28.8 3.6E+02 0.0079 30.6 9.9 84 16-99 272-363 (414)
62 TIGR03082 Gneg_AbrB_dup membra 28.4 3.9E+02 0.0084 25.7 8.9 100 506-617 14-117 (156)
63 COG0786 GltS Na+/glutamate sym 28.2 3.1E+02 0.0067 31.0 9.1 92 509-604 246-339 (404)
64 COG3180 AbrB Putative ammonia 27.8 4.4E+02 0.0096 29.3 10.1 95 501-603 199-297 (352)
65 PRK10669 putative cation:proto 27.3 2.4E+02 0.0051 32.5 8.4 83 510-600 248-330 (558)
66 COG2991 Uncharacterized protei 27.0 59 0.0013 28.3 2.7 36 7-45 4-39 (77)
67 PRK04125 murein hydrolase regu 25.9 4.5E+02 0.0097 25.5 8.7 87 510-598 30-118 (141)
68 PRK05326 potassium/proton anti 25.7 8.4E+02 0.018 28.1 12.6 48 19-67 249-296 (562)
69 KOG3626 Organic anion transpor 25.1 4.2E+02 0.0091 32.3 10.1 75 500-578 380-462 (735)
70 PRK12460 2-keto-3-deoxyglucona 25.0 1.1E+02 0.0024 33.4 4.9 54 547-602 48-101 (312)
71 PF10766 DUF2592: Protein of u 24.8 1.7E+02 0.0036 22.9 4.4 25 502-526 3-27 (41)
72 COG2855 Predicted membrane pro 24.7 4.7E+02 0.01 28.9 9.6 45 533-579 271-316 (334)
73 PF03956 DUF340: Membrane prot 24.7 2E+02 0.0044 29.0 6.4 42 515-564 3-44 (191)
74 COG0475 KefB Kef-type K+ trans 23.9 5.4E+02 0.012 28.5 10.2 87 507-600 240-327 (397)
75 COG4393 Predicted membrane pro 22.0 5.8E+02 0.012 28.5 9.5 47 7-63 5-51 (405)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.7e-40 Score=347.07 Aligned_cols=348 Identities=29% Similarity=0.409 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCCccc-c-hHHHHHHH-HHHHHHHHHH
Q 007019 9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYA-M-NFRFIAAD-TLQKIIMLFV 85 (621)
Q Consensus 9 ~VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~-m-n~~fIla~-~l~~llv~l~ 85 (621)
+++++++|+|+++++||+++|+ |++++++.+.+|++|+|+++|||+|.++.+.+..+ + ++.++... .+..++.+++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999 99999999999999999999999999999976444 2 44333322 2222333333
Q ss_pred HHHHHHHhcCCCchhhHhhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 007019 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ 164 (621)
Q Consensus 86 l~l~~~~~k~~~l~~~~tvfsL-ssf~NtgfmGIPLl~ALyGeegl~l~a~ivvvq~II~~TLgl~Lle~~~a~~~~~~~ 164 (621)
.+++.++.+.+ .++ ..++.+ ++++|++++|+|++.++||+++..+++++.+++.+++|+++..+++.++++....++
T Consensus 80 ~~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 157 (385)
T PF03547_consen 80 GFLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE 157 (385)
T ss_pred HHHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence 33344433332 232 344444 588999999999999999999999999999999999999999999999888777777
Q ss_pred hhhhhhcceeeeeccceeecCCCcccccccccCCCCceEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 007019 165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRN 244 (621)
Q Consensus 165 f~~ta~si~s~~~~~~v~sl~g~~~~~~~ae~~~~g~~~v~vr~s~~s~~~~~~~~~~~~tpr~snlt~~ei~s~~ss~~ 244 (621)
.++++.++.+.+.|++..+.|++++.++|.|+++|++.|...+++.+++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 210 (385)
T PF03547_consen 158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV--------------------------- 210 (385)
T ss_pred cccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh---------------------------
Confidence 77888899999999999999999999999999988766554332221111000
Q ss_pred CCCCCCCCCCccchhcccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 007019 245 PTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPN 324 (621)
Q Consensus 245 ~tp~~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~tpr~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (621)
..+|+
T Consensus 211 ------------------------------------------~~~~~--------------------------------- 215 (385)
T PF03547_consen 211 ------------------------------------------STSPS--------------------------------- 215 (385)
T ss_pred ------------------------------------------ccCCc---------------------------------
Confidence 00000
Q ss_pred CCCccccccccccccchhhhHHHHHHHHHHhhhhccccCCCCccccceeeeecCCCCcccCCCCcccccccCCCCCCCCC
Q 007019 325 PEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSG 404 (621)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ws~~~s~~s~~~~~~~~~~~~~~~~~~~~ 404 (621)
+
T Consensus 216 ------------------------------------------------------------~------------------- 216 (385)
T PF03547_consen 216 ------------------------------------------------------------P------------------- 216 (385)
T ss_pred ------------------------------------------------------------c-------------------
Confidence 0
Q ss_pred CCccchhhhhhhccCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCCccccccCCCCccccCccccccccC
Q 007019 405 RSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADA 484 (621)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (621)
+ . +... + . +
T Consensus 217 ------~---------------------~-----------~~~~-~----~---------------------~------- 225 (385)
T PF03547_consen 217 ------S---------------------N-----------STGA-E----Q---------------------K------- 225 (385)
T ss_pred ------c---------------------c-----------cchh-h----h---------------------h-------
Confidence 0 0 0000 0 0 0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc
Q 007019 485 GMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (621)
Q Consensus 485 ~~~~~mp~~~vm~~lil~~v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq 564 (621)
..-++|.++.+++++.++||++||+++|++|+++..++.+.+|.++.+++++||++++|++||.+|++|+.+
T Consensus 226 --------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~ 297 (385)
T PF03547_consen 226 --------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARG 297 (385)
T ss_pred --------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 001556688899999999999999999999999966656666699999999999999999999999988866
Q ss_pred chhhhccchHHHHHHHHHHhHHHHHHHHHHHHcCCChhHHHHHHHhcccCccccc
Q 007019 565 PKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 565 ~~~i~~~~~~~~~~~~lKll~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
.+...++++.....+++|+++.|++++++++++++++...+++++++++|+|+..
T Consensus 298 ~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~ 352 (385)
T PF03547_consen 298 PRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINS 352 (385)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHH
Confidence 6666788888888999999999999999999999999999999999999999864
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=6.2e-32 Score=280.89 Aligned_cols=114 Identities=47% Similarity=0.696 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHH
Q 007019 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (621)
Q Consensus 500 il~~v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~ 579 (621)
++...+|+++|||++||+++|++++++ |+++|+++.++++++|+++.|++|+++|+ .++.+.+++.++......
T Consensus 171 ~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~--~l~~~~~~~~~~~~~~~~ 244 (321)
T TIGR00946 171 MLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGL--ALSPRKIKLGVRDAILAL 244 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHH--hhChhhhccChHHHHHHH
Confidence 345678999999999999999999999 99999999999999999999999999997 455677788889999999
Q ss_pred HHHHhHHHHHHHHHHHHcCCChhHHHHHHHhcccCccccc
Q 007019 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 580 ~lKll~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
++|+++.|+++++++.++++++...+++++++|||+|+++
T Consensus 245 ~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~ 284 (321)
T TIGR00946 245 IVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVA 284 (321)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHH
Confidence 9999999999999999999999999999999999999875
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=99.98 E-value=3.7e-30 Score=267.64 Aligned_cols=110 Identities=15% Similarity=0.316 Sum_probs=98.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHH
Q 007019 503 MVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (621)
Q Consensus 503 ~v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lK 582 (621)
...|+++|||+++|+++|+++++. |+++|++++++++++|++++|++||++|++++.. ..+ ..+...++.++|
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~--~~~-~~~~~~~~~~~K 237 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAH--KFE-FSAEIAYNTFLK 237 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc-ccHHHHHHHHHH
Confidence 456788999999999999999999 9999999999999999999999999999987743 222 335667889999
Q ss_pred HhHHHHHHHHHHHHcCCChhHHHHHHHhcccCccccc
Q 007019 583 FLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 583 ll~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
+++.|++++++++++|+++...+++++++|||+|+++
T Consensus 238 li~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~ 274 (314)
T PRK09903 238 LILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSG 274 (314)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHH
Confidence 9999999999999999999999999999999999875
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=264.46 Aligned_cols=144 Identities=25% Similarity=0.515 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCCcccc-hHHHHHHHHHHHHHHHHH
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV 85 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~m-n~~fIla~~l~~llv~l~ 85 (621)
|+.++..++|+|++|++||+++|+ +.+++++.+.+||+|+|+++|||+|+++.+++.+.. ++.++.+..+..++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999 999999999999999999999999999999988876 677777766666666655
Q ss_pred HHHHHHHhcCCCchhhHhhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 007019 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLF 152 (621)
Q Consensus 86 l~l~~~~~k~~~l~~~~tvfsL-ssf~NtgfmGIPLl~ALyGeegl~l~a~ivvvq~II~~TLgl~Ll 152 (621)
...+.++..+++.++ ...+.+ +.++|++|+|+|++..+||++++.+++++...+.+..++++.+.+
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l 147 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILL 147 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444333332332 334544 578999999999999999999999999999999998888877765
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=97.94 E-value=1.6e-05 Score=85.41 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHh-cCcCChhhhhhHHHHHHHHHhHHHHHHHhhcC-Ccccc-hHHHHH-HHHHHHHHHHHHHHH
Q 007019 13 AVVPLYVAMILAYGSVRW-WKIFSPDQCSGINRFVAIFAVPLLSFHFISTN-DPYAM-NFRFIA-ADTLQKIIMLFVLGI 88 (621)
Q Consensus 13 aVlPLFvlI~LGYll~R~-wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~-d~~~m-n~~fIl-a~~l~~llv~l~l~l 88 (621)
.++.++++-.+||++... .+++++|..+.+|++|+|+..|||+|..+.+. +++++ +|.|+= -+.+..++-.++.++
T Consensus 16 pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~l 95 (408)
T KOG2722|consen 16 PVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGWL 95 (408)
T ss_pred cHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567788999999998543 48999999999999999999999999999987 55555 777773 334444455555566
Q ss_pred HHHHhcCCCchhhHhhhhhcccCcccccHHHHHHHHhc
Q 007019 89 WTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG 126 (621)
Q Consensus 89 ~~~~~k~~~l~~~~tvfsLssf~NtgfmGIPLl~ALyG 126 (621)
..+..+..+.. ..-+.+.|+++|.+.+=+-++-++.-
T Consensus 96 v~~I~rppp~~-~~fiia~~a~GN~gnlpL~Lv~alc~ 132 (408)
T KOG2722|consen 96 VVKILRPPPQL-RGFIIACCAFGNSGNLPLILVPALCD 132 (408)
T ss_pred HhheecCChhh-cCeEEEEeecCCcCCcHHHHhHHHhc
Confidence 65555433221 12223336899999999999999853
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=97.14 E-value=0.0011 Score=69.42 Aligned_cols=70 Identities=13% Similarity=-0.030 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhhhhhhcchhhh---ccchHHHHHHHHHHhHHHHHHHHHHHHcCCChhHHHHHHHhcccCccccc
Q 007019 548 AGLGMAMFSLGLFMALQPKIIA---CGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 548 a~lPLaLfSlGlfmaLq~~~i~---~~~~~~~~~~~lKll~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
..+.++||++|+. ++++.++ ..++....+.+.|+++.|+++++++.++++++......++.+++|+++++
T Consensus 12 ~~l~~~m~~~G~~--l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s 84 (286)
T TIGR00841 12 ILLFLIMFSMGCT--LEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTAS 84 (286)
T ss_pred HHHHHHHHHccCC--CcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHH
Confidence 3488999999974 4554444 45568889999999999999999999999999999999999999999864
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.83 E-value=0.011 Score=63.42 Aligned_cols=110 Identities=11% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHH----HHHHHhhHHHHHHHHHhhhhhhc-chhhhccchHHHHHHH
Q 007019 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKS----ISILSDAGLGMAMFSLGLFMALQ-PKIIACGNSVATFSMA 580 (621)
Q Consensus 506 ~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~s----l~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~~~~~~~~~~ 580 (621)
.|......+.+.++|++..+. -=....+.... +...-..++-++||++|+.+..+ ++...++++...++.+
T Consensus 5 ~~~~~~~~~~~~i~~~~~g~~----~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~ 80 (328)
T TIGR00832 5 ERYLTLWIFLAIAAGVGLGVL----FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLF 80 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHH
Confidence 445556677778888887776 21222223221 11112223446899988755444 6777788999999999
Q ss_pred HHHhHHHHHHHHHHHHc-CCChhHHHHHHHhcccCccccc
Q 007019 581 VRFLTGPAVMAAASIAV-GLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 581 lKll~gPava~~~~~~l-GL~g~~l~VaIlqAALP~AVta 619 (621)
..++++|++++++++++ ++++....=.++.++.|+.+++
T Consensus 81 ~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S 120 (328)
T TIGR00832 81 INWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMV 120 (328)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHH
Confidence 99999999999999875 9999988889999999998753
No 8
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=96.39 E-value=0.0011 Score=71.67 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=81.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHh------hcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHH
Q 007019 507 KLIRNPNTYSSLIGLVWSLIA------FRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (621)
Q Consensus 507 kLlrNP~i~A~llGl~~~l~~------~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~ 580 (621)
+=+-+|.+||.++++++..+- |.-+-+ -.++.+++++|||+++|++|+.+|.-+.-..+.-.-+.+..+-..+
T Consensus 243 ~~i~~Pptia~iiA~vigai~pLr~lifg~~ap-l~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii 321 (408)
T KOG2722|consen 243 KEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAP-LRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIII 321 (408)
T ss_pred HHhcCchHHHHHHHHHHhcchHHHHHhhccCch-HHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEE
Confidence 445689999999999987661 111112 2378999999999999999999998655335544555666677778
Q ss_pred HHHhHHHHHHHHHH---HHcCC----ChhHHHHHHHhcccCcccc
Q 007019 581 VRFLTGPAVMAAAS---IAVGL----RGTLLHVAIVQVIINPVRT 618 (621)
Q Consensus 581 lKll~gPava~~~~---~~lGL----~g~~l~VaIlqAALP~AVt 618 (621)
.|+++.|.+..++. .-+|+ ++.-.-|..+|-++|||+.
T Consensus 322 ~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~ 366 (408)
T KOG2722|consen 322 GRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAIN 366 (408)
T ss_pred eeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhh
Confidence 99999999876663 23333 3555678899999999974
No 9
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.34 E-value=0.019 Score=61.52 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=81.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhccchHHHHHHHHHHh
Q 007019 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIACGNSVATFSMAVRFL 584 (621)
Q Consensus 506 ~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~~~~~~~~~~lKll 584 (621)
|.+-+++.....+.-++.+.+ ..-.|+.....-... ..++.+.||..|+-+..+ ++....+|+..+++++..|+
T Consensus 5 ~~l~~~~~~~~~~~~v~~a~~----~~~~~~~~~~~~~~~-~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfv 79 (319)
T COG0385 5 RFLSRDPFKIFLLWVVLLAAI----APIFPETFGWLGSAI-PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFV 79 (319)
T ss_pred HHHhHhHHHHHHHHHHHHHHH----HHhccccchhhhHHH-HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHH
Confidence 333345544444444555555 444555443332222 778899999999865554 77788899999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcccCcccc
Q 007019 585 TGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRT 618 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVt 618 (621)
++|++++++++++.+++....=.++-++.|..+.
T Consensus 80 lmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 80 LMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchh
Confidence 9999999999999999999999999999998875
No 10
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=96.20 E-value=0.013 Score=57.25 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhhhc-chhhhccchHHHHHHHHHHhHHHHHHHHHH-HHcCCChhHHHHHHHhcccCccccc
Q 007019 549 GLGMAMFSLGLFMALQ-PKIIACGNSVATFSMAVRFLTGPAVMAAAS-IAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 549 ~lPLaLfSlGlfmaLq-~~~i~~~~~~~~~~~~lKll~gPava~~~~-~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
.+-++||++|+.+..+ ++...++.+..+.+.+.+++++|+++++++ ..+++++....-.++.++.|.+.++
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s 75 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPAS 75 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHH
Confidence 4678999999855444 444556778889999999999999999999 9999999999999999999998764
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.83 E-value=0.37 Score=50.61 Aligned_cols=137 Identities=7% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHH--HHHHHHhHHHHHHHhhcC--CcccchHHHHHHHHHHHHHH
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINR--FVAIFAVPLLSFHFISTN--DPYAMNFRFIAADTLQKIIM 82 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNr--fV~~VaLPaLLF~sIs~~--d~~~mn~~fIla~~l~~llv 82 (621)
+..++..++-+++=+++|.+++|+++ +..+.+.+ .+..+.+=++++..+..+ ++.+..+..+.+..+-.++.
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~p----~~~~~~~~~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~ 208 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKLP----QIAKIILKVGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAG 208 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHhCchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444446666667788999988833 22222222 111112222223222222 11111334344444444444
Q ss_pred HHHHHHHHHHhcCCCchhhHhhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Q 007019 83 LFVLGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLF 150 (621)
Q Consensus 83 ~l~l~l~~~~~k~~~l~~~~tvfsL-ssf~NtgfmGIPLl~ALyGeegl~l~a~ivvvq~II~~TLgl~ 150 (621)
|++.+.+.+..+.+..+ .+++ ++ ++.-|++ +|+++....|+++.....+.+.+.+.++...+..+
T Consensus 209 ~~~g~~~a~~~~l~~~~-~~t~-~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~ 274 (286)
T TIGR00841 209 FLLGYLLAKLAGLPWAR-CRTI-SIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALL 274 (286)
T ss_pred HHHHHHHHHHhCCCHhh-heee-eeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544433222 1233 33 5668888 99999999998666666666666666655444433
No 12
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=91.71 E-value=0.55 Score=50.17 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHhhHHHHHHHHHhhhhhhcchhh---hccchHHHHHHHHHHhH
Q 007019 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS--ILSDAGLGMAMFSLGLFMALQPKII---ACGNSVATFSMAVRFLT 585 (621)
Q Consensus 511 NP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~--iLg~a~lPLaLfSlGlfmaLq~~~i---~~~~~~~~~~~~lKll~ 585 (621)
|+.+++.+++++++.. ++-|.-..+.++ ...+.++.+..|.-|+ .|+.+.+ ..+|+..+++.+.-|++
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl--~L~~~~l~~~~~~~~~~l~~~~~~fvl 73 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGL--SLPTEELKAALRNWRLHLFVQAFNFVL 73 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcC--CCCHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4556666666666665 344444334443 5667778999999996 5555444 45788889999999999
Q ss_pred HHHHHHHHHHHcC--CChhHHHHHHHhcccCccccc
Q 007019 586 GPAVMAAASIAVG--LRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 586 gPava~~~~~~lG--L~g~~l~VaIlqAALP~AVta 619 (621)
.|++++++..+++ +++..+.=.++.++||+.+..
T Consensus 74 ~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 74 FPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS 109 (313)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence 9999999999984 677777778888999997653
No 13
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=90.87 E-value=3.8 Score=45.13 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCCcccc---hHHHHHHHHHHHHHHHHH
Q 007019 11 LTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFV 85 (621)
Q Consensus 11 LsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~m---n~~fIla~~l~~llv~l~ 85 (621)
+..+=|+.+++++|.++.-. |+++....+.+-.++..+.+|+.++-.+.+.|+.++ ..+.++++.++.+.+.+.
T Consensus 22 f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 22 FKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred HhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455777889999999999 999655667899999999999999999999999875 677777777666555433
No 14
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=90.31 E-value=2.7 Score=50.45 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhH
Q 007019 511 NPNTYSSLIGLVWSLIAFRWHVSMPKII-----EKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (621)
Q Consensus 511 NP~i~A~llGl~~~l~~~rwgi~lP~~l-----~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~ 585 (621)
.-.++..++|+++....+. ..... +..+-.+...++.+.||+.|+ .|..+.++..|+..+..+++=+.+
T Consensus 39 s~~~v~Ll~GiilGP~~l~----~idP~~~g~~d~i~leIteIvL~I~LFa~Gl--~L~~~~Lrr~wrsV~rLl~~~M~l 112 (810)
T TIGR00844 39 GESMVASIFGLIVGPHCLN----WFNPLSWGNTDSITLEISRILLCLQVFAVSV--ELPRKYMLKHWVSVTMLLVPVMTS 112 (810)
T ss_pred cHHHHHHHHHHHhhhhhhc----cCChhhcccchHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHhHHHHHHHHHHHHHH
Confidence 5567778889998877443 22222 223333889999999999997 677888888888876666555555
Q ss_pred HHHHHHHHHHHc--CCChhHHHHHHHhccc
Q 007019 586 GPAVMAAASIAV--GLRGTLLHVAIVQVII 613 (621)
Q Consensus 586 gPava~~~~~~l--GL~g~~l~VaIlqAAL 613 (621)
+=++.+++++++ |++ +..+++.+|+
T Consensus 113 T~livAL~a~~Li~GL~---~~~ALLLGAI 139 (810)
T TIGR00844 113 GWLVIALFVWILVPGLN---FPASLLMGAC 139 (810)
T ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHhh
Confidence 555555555433 655 4456666554
No 15
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=85.41 E-value=14 Score=39.70 Aligned_cols=112 Identities=13% Similarity=0.185 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcC---Cc-ccchHHHHHHHHHHHHHHHHH----
Q 007019 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN---DP-YAMNFRFIAADTLQKIIMLFV---- 85 (621)
Q Consensus 14 VlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~---d~-~~mn~~fIla~~l~~llv~l~---- 85 (621)
.+-+++=+++|-+++|+++-.-+. .+..-+.+-..++-.+++..+++. +. .+.+...++......+..+++
T Consensus 164 ~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 242 (313)
T PF13593_consen 164 VLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL 242 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456677777774422222 344555556667767777666554 21 123333222222222222211
Q ss_pred HHHHHHHhcCCCchhhHhhhhhcccCcccccHHHHHHHHhccc
Q 007019 86 LGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (621)
Q Consensus 86 l~l~~~~~k~~~l~~~~tvfsLssf~NtgfmGIPLl~ALyGee 128 (621)
.+...+..+.++.|. ....+|+--.+.-+|+|++..+|++.
T Consensus 243 ~~~~~r~~~~~~~d~--iA~~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 243 GWLAARLLGFSRPDR--IAVLFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHhhcCCChhhE--EEEEEEcCcCcchhHHHHHHHHcccc
Confidence 122333333222331 22222545788999999999999985
No 16
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=79.77 E-value=12 Score=38.46 Aligned_cols=94 Identities=15% Similarity=0.089 Sum_probs=74.4
Q ss_pred HHHHhhhHHHHHHHH-HHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHh
Q 007019 506 RKLIRNPNTYSSLIG-LVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (621)
Q Consensus 506 ~kLlrNP~i~A~llG-l~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll 584 (621)
|+.+-||++.+.++= +++.+. |+++..+.+. -+++ ...++-+-.++++=+=-|.+.++++++..+.+..+=-+
T Consensus 16 ~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~~g-g~~l-~~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~ 89 (215)
T PF04172_consen 16 KSPFLNPLLIAIVLIIAFLLLT----GIPYEDYMQG-GDIL-SFLLGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSL 89 (215)
T ss_pred CCCcccHHHHHHHHHHHHHHHH----CCCHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445669999998863 444555 8888887754 4555 44566667788877777899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHH
Q 007019 585 TGPAVMAAASIAVGLRGTLLH 605 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~ 605 (621)
++-...+.+++++|++.....
T Consensus 90 ~~~~~~~~l~~~lgl~~~~~~ 110 (215)
T PF04172_consen 90 VSIFSAVLLARLLGLSPEIIL 110 (215)
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999876654
No 17
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=79.34 E-value=32 Score=37.70 Aligned_cols=129 Identities=13% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcC--Ccccc--hHHHHH--
Q 007019 2 ITWKDLYL--VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN--DPYAM--NFRFIA-- 73 (621)
Q Consensus 2 i~~~dm~~--VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~--d~~~m--n~~fIl-- 73 (621)
|+++.+.+ ++...+|+.+-+..=|++.|+ +-- +-..+.+-...--+++++|++.-+.-- .-+.+ ++.-++
T Consensus 172 v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~-~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~li 249 (342)
T COG0798 172 VPFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGR-EWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLI 249 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-hHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHH
Confidence 34555543 556777888877777888777 432 223455555556667777776633211 11111 222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcCCCchhhHhhhhhcccCcccccHHHHHHHHhc-cchhhHHH
Q 007019 74 --ADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGSLMV 134 (621)
Q Consensus 74 --a~~l~~llv~l~l~l~~~~~k~~~l~~~~tvfsLssf~NtgfmGIPLl~ALyG-eegl~l~a 134 (621)
...+...+.+.+.+...+..+.+..+ .+-.++++-+|+-=+.+++..++|| +.+...+.
T Consensus 250 AIpl~iy~~~~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~ 311 (342)
T COG0798 250 AIPLLIYFLLMFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAALAT 311 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccchhhh
Confidence 22334444444445555544433223 2333334569999999999999999 55544433
No 18
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=77.53 E-value=18 Score=38.93 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=62.2
Q ss_pred HhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhh-ccchHHHHHHHHHHhHHH
Q 007019 509 IRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA-CGNSVATFSMAVRFLTGP 587 (621)
Q Consensus 509 lrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~-~~~~~~~~~~~lKll~gP 587 (621)
.-.+.++|.++|++++- |-+..|+..+..++.-++..+.++..-+|+++ .+..+. -++.......+. .++.=
T Consensus 25 ~l~~~~~AillG~~i~n----~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l--~~~~i~~~G~~~~~~~~~~-v~~~~ 97 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGN----LFFGLPARFKPGIKFSSKKLLRLGIVLLGFRL--SFSDILALGWKGLLIIIIV-VILTF 97 (305)
T ss_pred CccHHHHHHHHHHHHhh----hccCCcHHHHhHHHHHHHHHHHHHHHHHCccc--cHHHHHHhCccHHHHHHHH-HHHHH
Confidence 34578899999999774 24688999999999999999999999999854 444444 444444444443 33334
Q ss_pred HHHHHHH-HHcCCChhHH
Q 007019 588 AVMAAAS-IAVGLRGTLL 604 (621)
Q Consensus 588 ava~~~~-~~lGL~g~~l 604 (621)
.+.+.++ ..+|++....
T Consensus 98 ~~~~~lg~r~~~l~~~~~ 115 (305)
T PF03601_consen 98 LLTYWLGRRLFGLDRKLA 115 (305)
T ss_pred HHHHHHHHHHhCCCHHHH
Confidence 4444455 9999986644
No 19
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=70.84 E-value=34 Score=33.36 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhccc--hHHHHHHHHHHhHHHHHHHHHHHHcCCChhH
Q 007019 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIACGN--SVATFSMAVRFLTGPAVMAAASIAVGLRGTL 603 (621)
Q Consensus 532 i~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~~--~~~~~~~~lKll~gPava~~~~~~lGL~g~~ 603 (621)
+.+|.- ....+.+.++-+-+.++|++-+-+ ++.++.+. ....++.++-++..-++.++..++++++...
T Consensus 45 ~~~p~~---~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 45 WYIPFS---ANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYAL 116 (154)
T ss_pred eecChh---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 346653 556677888889999999987766 45565544 5555566666666666677777899998653
No 20
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=69.86 E-value=40 Score=34.59 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHH
Q 007019 500 ILIMVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFS 578 (621)
Q Consensus 500 il~~v~~kLlrNP~i~A~-llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~ 578 (621)
++-.+.|+ ++-|.+.+. ++|+++.-..+.+ ++ +. +.++.+++.++.+.||..|+ .++++.+++.++.....
T Consensus 6 ~~~~l~~~-l~lP~~v~~il~GillGp~~lg~-i~-~~---~~~~~l~~igl~~llF~~Gl--~~d~~~l~~~~~~~~~~ 77 (273)
T TIGR00932 6 LAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGL-IS-NV---EGVNHLAEFGVILLMFLIGL--ELDLERLWKLRKAAFGV 77 (273)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHhCcccccC-CC-Ch---HHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 44556666 477766665 4577765432221 11 22 46899999999999999997 56678888777777666
Q ss_pred HHHHHhHH-HHHHHHHHHHcCCC
Q 007019 579 MAVRFLTG-PAVMAAASIAVGLR 600 (621)
Q Consensus 579 ~~lKll~g-Pava~~~~~~lGL~ 600 (621)
...-+++. =++.+.+++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~ 100 (273)
T TIGR00932 78 GVLQVLVPGVLLGLLLGHLLGLA 100 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 66666653 33344467888865
No 21
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=69.20 E-value=29 Score=37.41 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCchhhHhhhhhcccCcccccHHHHHHHHhccch
Q 007019 80 IIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYS 129 (621)
Q Consensus 80 llv~l~l~l~~~~~k~~~l~~~~tvfsLssf~NtgfmGIPLl~ALyGeeg 129 (621)
++.+.+.++..+..+.+..+ ....++++-..+.-+|+++....||+..
T Consensus 257 ~~~~~lg~~~~r~~~l~~~~--~~a~~~e~g~qN~~lai~lA~~~f~~~~ 304 (328)
T TIGR00832 257 YIMFFLTFALAKKLGLPYSI--TAPAAFTGASNNFELAIAVAISLFGLNS 304 (328)
T ss_pred HHHHHHHHHHHHHhCcChhh--hhhheehhhhhhHHHHHHHHHHhCCCCc
Confidence 34444445455554433233 2333334334556789999999998754
No 22
>PRK10711 hypothetical protein; Provisional
Probab=68.19 E-value=24 Score=36.73 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=72.1
Q ss_pred HHHHhhhHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHh
Q 007019 506 RKLIRNPNTYSSLIGLVW-SLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (621)
Q Consensus 506 ~kLlrNP~i~A~llGl~~-~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll 584 (621)
+..+.||++.+.++-+.+ .+. |+++.++.+.. +++.. .++-+-.++++=|=-|.+.+++.|...+.+.++=-+
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~~----~i~Y~~Y~~g~-~~l~~-lLgPAtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~ 100 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLLT----GIPYEHYFKGS-EVLND-LLQPAVVALAFPLYEQLHQIRARWKSIISICFIGSV 100 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHHh----CCCHHHHHhcc-HHHHh-hhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445669999998755433 333 88888875543 66654 344455667776777899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHH
Q 007019 585 TGPAVMAAASIAVGLRGTLLH 605 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~ 605 (621)
++-...++++.++|++.....
T Consensus 101 v~i~s~~~l~~~lg~~~~~~~ 121 (231)
T PRK10711 101 VAMVTGTAVALWMGATPEIAA 121 (231)
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999887654
No 23
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=67.86 E-value=28 Score=36.07 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=73.2
Q ss_pred HHHHhhhHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHh
Q 007019 506 RKLIRNPNTYSSLIGLVW-SLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (621)
Q Consensus 506 ~kLlrNP~i~A~llGl~~-~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll 584 (621)
|..+-||++.+.++-+.+ .+. |+++.++-+ .-+++. ..++-+-.++++=|=-|.+.+++++...+.+..+--+
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~~----~i~Y~~Y~~-g~~~l~-~lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~ 99 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLLV----GIPYESYML-GGGVIN-DLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSV 99 (226)
T ss_pred CCccccHHHHHHHHHHHHHHHh----CCCHHHHHH-hhHHHH-HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 555679999998866443 333 788888744 445554 5566667777777777899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHH
Q 007019 585 TGPAVMAAASIAVGLRGTLLH 605 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~ 605 (621)
++-+..+++++++|++.....
T Consensus 100 ~~~~s~~~la~~lg~~~~i~~ 120 (226)
T TIGR00659 100 IAIISGTLLALLLGLGPEIIA 120 (226)
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999876554
No 24
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=66.60 E-value=23 Score=36.86 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=74.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHh
Q 007019 505 WRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (621)
Q Consensus 505 ~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll 584 (621)
+|+.+-||+.++.++.+.+-.. .|+++..+..+. +.+..-.=| +-.++.+=+=-|++.++++|+..+.+.++--+
T Consensus 28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~Y~~g~-~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~ 102 (230)
T COG1346 28 TKSPFLNPLLVATVLLIAFLLL---FGISYEDYMKGG-QWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV 102 (230)
T ss_pred cCCcccchHHHHHHHHHHHHHH---cCCCHHHHhccc-HHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457779999999977665544 377777765432 233222222 44555554456799999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcccCcccc
Q 007019 585 TGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRT 618 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVt 618 (621)
++-...+++++++|+++...+ +-+|-+||
T Consensus 103 ~ai~s~~llak~~g~~~~~~~-----Sl~PkSvT 131 (230)
T COG1346 103 VAIISGVLLAKLFGLSPELIL-----SLLPKSVT 131 (230)
T ss_pred HHHHHHHHHHHHhCCCHHHHH-----Hhcccccc
Confidence 999999999999999987654 34555554
No 25
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=66.58 E-value=92 Score=34.16 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHH
Q 007019 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWT 90 (621)
Q Consensus 14 VlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~m---n~~fIla~~l~~llv~l~l~l~~ 90 (621)
.+|-.+++-+|-..--..|.|+ .|+....-|-+..+|++++.-+.+-|..++ ..+++..+.++.+..++...++.
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4566666666665544449995 688888889999999999999999988864 67777776666665554444443
Q ss_pred HHhcCCC-chhhHhhhhhccc-CcccccHHHHHHHHhcc--chhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 007019 91 NFTKNGS-LEWMITIFSLSTL-PNTLVMGIPLLIAMYGE--YSGSLMVQVVVLQCIIWYTLLLFLFEYR 155 (621)
Q Consensus 91 ~~~k~~~-l~~~~tvfsLssf-~NtgfmGIPLl~ALyGe--egl~l~a~ivvvq~II~~TLgl~Lle~~ 155 (621)
...+.-. .-|.++-...+++ +-..+| .-+++.+-- +...+....+.+.--+|+.+.+.+..+.
T Consensus 109 p~~ksf~gd~Wka~gmi~gSytGGSaNm--AAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVpy~ 175 (384)
T COG5505 109 PLLKSFIGDLWKAGGMISGSYTGGSANM--AAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVPYK 175 (384)
T ss_pred HHHhhhcchHHhhhhheeeeeeCCcchH--HHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111 2243222111344 333332 223344432 2234555666666666777777665543
No 26
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=66.29 E-value=49 Score=32.66 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhcc-chHHHHHHHHHHhHHHHHHHHHH
Q 007019 517 SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIACG-NSVATFSMAVRFLTGPAVMAAAS 594 (621)
Q Consensus 517 ~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~-~~~~~~~~~lKll~gPava~~~~ 594 (621)
.+.|+++..+.-|+++.+|. ...+.+.+-++-+-+.++|+..+-+ ++.++.. ++...++. +=.++..++.+.++
T Consensus 30 L~vgL~~G~~~~~~~~~~~~---~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~-~i~~~~~~~~~~~~ 105 (169)
T PF06826_consen 30 LFVGLILGALGRTGPIFLPI---SAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGV-IITLVPLLIALVIG 105 (169)
T ss_pred HHHHHHHHHhhhccCCCCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566666665555555555 4455677788889999999987766 3444444 44444444 44555666677777
Q ss_pred H-HcCCChhHH
Q 007019 595 I-AVGLRGTLL 604 (621)
Q Consensus 595 ~-~lGL~g~~l 604 (621)
+ +++++....
T Consensus 106 ~~~~~l~~~~~ 116 (169)
T PF06826_consen 106 RYLFKLNPGIA 116 (169)
T ss_pred HHHcCCCHHHH
Confidence 7 999985443
No 27
>PRK03818 putative transporter; Validated
Probab=65.50 E-value=36 Score=39.45 Aligned_cols=93 Identities=12% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhc-cchHHHHHHHHHHhHHHHHHHHH
Q 007019 516 SSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIAC-GNSVATFSMAVRFLTGPAVMAAA 593 (621)
Q Consensus 516 A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~-~~~~~~~~~~lKll~gPava~~~ 593 (621)
..+.|+++..+.-++++.+|+- ....+.+-++-|-++++|++.+-+ ++.++. +++..+++.++ .+++.++++++
T Consensus 36 ~L~~gl~~G~~~~~~~~~~~~~---~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~ 111 (552)
T PRK03818 36 VLFGGIIVGHFVSQFGLTLDSD---MLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAIL 111 (552)
T ss_pred HHHHHHHHhccccccCcccChH---HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 3445555555222337777773 455677888899999999987766 455554 56665655544 44445557777
Q ss_pred HHHcCCChhHHHHHHHhccc
Q 007019 594 SIAVGLRGTLLHVAIVQVII 613 (621)
Q Consensus 594 ~~~lGL~g~~l~VaIlqAAL 613 (621)
.+++|++.. ..+-++..||
T Consensus 112 ~~~~~~~~~-~~~G~~aGa~ 130 (552)
T PRK03818 112 HKLFGIPLP-VMLGIFSGAV 130 (552)
T ss_pred HHHhCCCHH-HHHHHhhccc
Confidence 899999854 3344444444
No 28
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=64.02 E-value=56 Score=34.08 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=70.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhH
Q 007019 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (621)
Q Consensus 506 ~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~ 585 (621)
|..+-||++.+.++-+.+-++ -++++.++-+ .-+++.. .++-+-.++++=+=-|.+.+++.|...+.+.++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y~~-g~~~l~~-lLgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEYNI-GGDIISF-FLEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHHHh-hhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334579999998865443333 1777777744 4444443 3444556666666778999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHH
Q 007019 586 GPAVMAAASIAVGLRGTLLH 605 (621)
Q Consensus 586 gPava~~~~~~lGL~g~~l~ 605 (621)
+-+..++++.++|++.....
T Consensus 107 ~i~s~~~la~~lgl~~~~~~ 126 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMA 126 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999986544
No 29
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=62.57 E-value=39 Score=39.26 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhc-cchHHHHHHHHHHhHHHHHHHHHH
Q 007019 517 SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIAC-GNSVATFSMAVRFLTGPAVMAAAS 594 (621)
Q Consensus 517 ~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~-~~~~~~~~~~lKll~gPava~~~~ 594 (621)
.++|+++..+ ++++|+. +.+.++-|-++|+|++.+=| ++.+++ +++..+++. +=.+++-++++++.
T Consensus 42 Lfvgl~~G~~----g~~i~~~-------v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~-~~~~~~~~~~~~~~ 109 (562)
T TIGR03802 42 LIVAVLIGQL----GIQIDPG-------VKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILAL-VFAVSGLITVYALA 109 (562)
T ss_pred HHHHHHHHhc----CCCCChH-------HHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3455555555 8888875 44567788888999887766 566666 466655555 44556678888899
Q ss_pred HHcCCCh
Q 007019 595 IAVGLRG 601 (621)
Q Consensus 595 ~~lGL~g 601 (621)
+++|++.
T Consensus 110 ~~~g~~~ 116 (562)
T TIGR03802 110 KIFGLDK 116 (562)
T ss_pred HHhCCCH
Confidence 9999974
No 30
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=59.95 E-value=32 Score=40.02 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=67.2
Q ss_pred HHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHH
Q 007019 508 LIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGP 587 (621)
Q Consensus 508 LlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gP 587 (621)
+=-++.+-|.++|++++-. +.-..++..++-+.+..+|+-.+++|+ .++++.+...+..++...++.+++-+
T Consensus 235 ~Gls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm--~id~~~l~~~~~~il~~~~~~l~~K~ 306 (601)
T PRK03659 235 LGLSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGM--ALNLGVLYTHLLWVLISVVVLVAVKG 306 (601)
T ss_pred hCccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhh--hccHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3367888888889887644 344566777888889999999999995 66777777777776666677788888
Q ss_pred HHHHHHHHHcCCCh
Q 007019 588 AVMAAASIAVGLRG 601 (621)
Q Consensus 588 ava~~~~~~lGL~g 601 (621)
+..++.+..+|++.
T Consensus 307 ~~~~~~~~~~g~~~ 320 (601)
T PRK03659 307 LVLYLLARLYGLRS 320 (601)
T ss_pred HHHHHHHHHhCCCH
Confidence 88999999999874
No 31
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=58.18 E-value=20 Score=38.85 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=47.3
Q ss_pred HhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHHHHHHHHHcCCChh
Q 007019 546 SDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGT 602 (621)
Q Consensus 546 g~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPava~~~~~~lGL~g~ 602 (621)
..+.+++-+||.|. .+++|....-.++...-++.|++++-++.+++...+|.+|.
T Consensus 47 ~~~iig~~l~~~Ga--~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi 101 (314)
T PF03812_consen 47 ANPIIGVFLFCMGA--QIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGI 101 (314)
T ss_pred hHHHHHHHHHHhcc--ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 45667888999998 46677777888888888899999999999999999999884
No 32
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=57.27 E-value=62 Score=37.99 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhHHHHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHH
Q 007019 502 IMVWRKLIRNPNTYSSL-IGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (621)
Q Consensus 502 ~~v~~kLlrNP~i~A~l-lGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~ 580 (621)
..+.|+ ++-|.+.+-+ +|+++.=..+.| ++- ...+..++.-++.+.||.+|+ -++++.+....+..+....
T Consensus 21 ~~l~~r-l~lp~vlgyilaGillGP~~lg~-i~~----~~~i~~laelGvv~LlF~iGL--El~~~~l~~~~~~~~~~g~ 92 (621)
T PRK03562 21 VPIAVR-LGLGSVLGYLIAGCIIGPWGLRL-VTD----VESILHFAEFGVVLMLFVIGL--ELDPQRLWKLRRSIFGGGA 92 (621)
T ss_pred HHHHHH-hCCChHHHHHHHHHHhCcccccC-CCC----HHHHHHHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHH
Confidence 334444 5778777764 466655432222 121 245789999999999999997 5677777766666555445
Q ss_pred HHHhHHHHHHHHHHHHcCCCh
Q 007019 581 VRFLTGPAVMAAASIAVGLRG 601 (621)
Q Consensus 581 lKll~gPava~~~~~~lGL~g 601 (621)
+-+++.-++.+++++++|++-
T Consensus 93 ~qv~~~~~~~~~~~~~~g~~~ 113 (621)
T PRK03562 93 LQMVACGGLLGLFCMLLGLRW 113 (621)
T ss_pred HHHHHHHHHHHHHHHHhCCCH
Confidence 555555555666778888754
No 33
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=56.74 E-value=1.8e+02 Score=31.80 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHH---HhHHHHHHHhhcCCcccchHHH--HHHHHHHHHHHHHH
Q 007019 11 LTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIF---AVPLLSFHFISTNDPYAMNFRF--IAADTLQKIIMLFV 85 (621)
Q Consensus 11 LsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~V---aLPaLLF~sIs~~d~~~mn~~f--Ila~~l~~llv~l~ 85 (621)
.+.+..+++=+.+|-+++++ + ++..+...+.+-++ ++=+.++...+.+-.+-....+ +++..+--++.|.+
T Consensus 164 ~~i~~~vllP~~LG~~~r~~---~-~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~ 239 (319)
T COG0385 164 LSILLQVLLPFVLGQLLRPL---L-PKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLL 239 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556677777776 2 34444444444443 3334444444433222122222 22222222233333
Q ss_pred HHHHHHHhcCCCchhhHhhhhhc-ccCcccccHHHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 007019 86 LGIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYG-EYSGSLMVQVVVLQCIIW 144 (621)
Q Consensus 86 l~l~~~~~k~~~l~~~~tvfsLs-sf~NtgfmGIPLl~ALyG-eegl~l~a~ivvvq~II~ 144 (621)
.+...++.+.+..+ ....+++ +.-| +=.|+|+...-++ .......+++.+.|++.-
T Consensus 240 gy~~ar~~g~~~a~--~iti~ie~g~qn-~~lg~alA~~f~~~~~~alP~aif~~~q~~~~ 297 (319)
T COG0385 240 GYFGARLLGFDKAD--EITIAIEGGMQN-LGLGAALAAAFFGNPLMALPLAIFSVWQNMSG 297 (319)
T ss_pred HHHHHHHhCCChhh--eeeEEEeecccc-HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHH
Confidence 44445555543233 2223334 4455 5569999999555 444556666666666543
No 34
>COG3329 Predicted permease [General function prediction only]
Probab=55.11 E-value=1.1e+02 Score=33.51 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccc-hHHH
Q 007019 498 RLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGN-SVAT 576 (621)
Q Consensus 498 ~lil~~v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~-~~~~ 576 (621)
|++.+.+.++.+.||-+...+.|++..++.-. +--+.++...+=+=+..+-+-|+-+|+-.+-|.+.+++.. +..+
T Consensus 204 ~v~~~ell~Esflnpal~lllggl~iGlitGe---~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~ 280 (372)
T COG3329 204 RVKIWELLQESFLNPALVLLLGGLAIGLITGE---QGESVLKPFFDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVL 280 (372)
T ss_pred chhhHHHHHHHHcCchHHHHHHHHHHhheecc---CchhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceeh
Confidence 56778999999999999999999999988422 2334556677788889999999999987776655555443 3334
Q ss_pred HHHHHHHhHHHHHHHHHHHHcCCC-----hhHHHHHHHhc
Q 007019 577 FSMAVRFLTGPAVMAAASIAVGLR-----GTLLHVAIVQV 611 (621)
Q Consensus 577 ~~~~lKll~gPava~~~~~~lGL~-----g~~l~VaIlqA 611 (621)
++. +-.++.-.+++++.+.-|+. |...-.+++.+
T Consensus 281 fgl-laPil~g~ig~~lg~~a~y~tgfs~g~~vllAVlaa 319 (372)
T COG3329 281 FGL-LAPILHGFIGLLLGMIAGYPTGFSDGGVVLLAVLAA 319 (372)
T ss_pred HHH-HHHHHHHHHHHHHHHHhcccccCCCcchHHHHHHhc
Confidence 444 34444445555555555552 22444555544
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=55.02 E-value=55 Score=38.38 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHHH
Q 007019 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVM 590 (621)
Q Consensus 511 NP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPava 590 (621)
++.+=|.++|++++-. +.-.-++..++-+.+-.+|+-.+++|+ .+++..+...+...+...++.+++-++..
T Consensus 241 s~~lGAFlAGl~l~~~------~~~~~le~~i~pf~~lll~lFFi~vG~--~id~~~l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLASS------EYRHALESDIEPFKGLLLGLFFIAVGM--SIDFGTLLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888886644 334567777777788899999999995 66777766666666566667888888999
Q ss_pred HHHHHHcCCC
Q 007019 591 AAASIAVGLR 600 (621)
Q Consensus 591 ~~~~~~lGL~ 600 (621)
++.+..+|++
T Consensus 313 ~~~~~~~g~~ 322 (621)
T PRK03562 313 WLLARPLGVP 322 (621)
T ss_pred HHHHHHhCCC
Confidence 9999999986
No 36
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=53.14 E-value=74 Score=35.12 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCcCChhhhh---hHHHHHHHHHhHHHHH-HHhhcCCcccc----hHHHHHHHHHHHHHHHHHHHH
Q 007019 17 LYVAMILAYGSVRWWKIFSPDQCS---GINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLGI 88 (621)
Q Consensus 17 LFvlI~LGYll~R~wgift~e~~~---~LNrfV~~VaLPaLLF-~sIs~~d~~~m----n~~fIla~~l~~llv~l~l~l 88 (621)
...++++|.+++.. ++++++-.+ ...+|+.+..++.+++ -.+..+|++++ ++.++.......+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55677788888888 999987444 4566767666666666 46777888764 345554444444433333444
Q ss_pred HHHHhcCCCchhhHhh-hhhcccCcccccH
Q 007019 89 WTNFTKNGSLEWMITI-FSLSTLPNTLVMG 117 (621)
Q Consensus 89 ~~~~~k~~~l~~~~tv-fsLssf~NtgfmG 117 (621)
..++.+--+.|-.++. ..++..+-|+-++
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 5555543334522221 2223445555544
No 37
>PRK04972 putative transporter; Provisional
Probab=52.71 E-value=3.4e+02 Score=31.66 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=44.5
Q ss_pred CCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhc-cchHHHHHHHHHHhHHHHHHHHHH-HHcCCChhHH
Q 007019 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIAC-GNSVATFSMAVRFLTGPAVMAAAS-IAVGLRGTLL 604 (621)
Q Consensus 532 i~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~-~~~~~~~~~~lKll~gPava~~~~-~~lGL~g~~l 604 (621)
+.+|. .....|.+-++-+-+.++|+.-+-+ ...++. +++..+++.++-++. .++.++++ ++++++....
T Consensus 434 ~~~p~---~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~-~~~~~~~~~~~~k~~~~~~ 505 (558)
T PRK04972 434 GYIPQ---GALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVP-VVICFLFGAYVLRMNRALL 505 (558)
T ss_pred eeeCH---HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHH
Confidence 34676 4666777888888899999876655 233343 566666666555544 34444444 8999987744
No 38
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=52.18 E-value=29 Score=37.64 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcc-hhhhccchHHHHHHHHHHhHHHHHHH
Q 007019 513 NTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACGNSVATFSMAVRFLTGPAVMA 591 (621)
Q Consensus 513 ~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~-~~i~~~~~~~~~~~~lKll~gPava~ 591 (621)
.+++.++|++|.-+ .-++|+.+...+.. .+|+.-|++|. .+.+ .++..++.-.+++.++=++.+.+..+
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~--~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGA--GINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcC--CeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 67888888888665 33577888777776 89999999998 4555 44566777777777666666666555
Q ss_pred HHHHHcCCChhH
Q 007019 592 AASIAVGLRGTL 603 (621)
Q Consensus 592 ~~~~~lGL~g~~ 603 (621)
+- .++|+++..
T Consensus 239 i~-rllg~~~~~ 249 (312)
T PRK12460 239 AD-RLVGGTGIA 249 (312)
T ss_pred HH-HHhCCChhH
Confidence 55 777887665
No 39
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=50.26 E-value=1.3e+02 Score=32.98 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhh-ccchHHHHHH
Q 007019 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA-CGNSVATFSM 579 (621)
Q Consensus 501 l~~v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~-~~~~~~~~~~ 579 (621)
...++|+.++|+-++-.+-|++..+++-.=+++ -++....-+=+..+-+-|+=+|+-.+-|.+.++ .+++...++.
T Consensus 167 ~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~---~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi 243 (327)
T PF05982_consen 167 WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVE---SIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGI 243 (327)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHhheeCccchh---hccchhhccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHH
Confidence 467899999999999999999988884332222 223344445566777778888876665655444 4555556665
Q ss_pred HHHHhHHHHHHHHHHHHcCCC-hhHHHHHHHhc
Q 007019 580 AVRFLTGPAVMAAASIAVGLR-GTLLHVAIVQV 611 (621)
Q Consensus 580 ~lKll~gPava~~~~~~lGL~-g~~l~VaIlqA 611 (621)
+. .++.-.+.+++++++|++ |...-.+++.|
T Consensus 244 ~~-Pli~a~ig~~lg~~~gls~Gg~~llavLaA 275 (327)
T PF05982_consen 244 LM-PLINALIGIGLGWLLGLSPGGAVLLAVLAA 275 (327)
T ss_pred HH-HHHHHHHHHHHHHHhCCCCccHHHHHHHHh
Confidence 44 444555677778999996 55555555544
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.41 E-value=1e+02 Score=35.45 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHH
Q 007019 502 IMVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (621)
Q Consensus 502 ~~v~~kLlrNP~i~A~-llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~ 580 (621)
-.+.|+ ++.|.+.+= ++|+++.-..+. + .+. ...++.+++.++-+.||..|+ -++++.++...+....+..
T Consensus 22 ~~l~~r-l~~P~ivg~IlaGillGp~~lg--~-~~~--~~~~~~la~lGli~llF~~Gl--e~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 22 GMLANR-LRISPLVGYLLAGVLAGPFTPG--F-VAD--TKLAPELAELGVILLMFGVGL--HFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHH-cCCCHHHHHHHHHHhhCccccc--c-ccc--hHHHHHHHHHHHHHHHHHhHh--cCCHHHHHHHhhHHHHHHH
Confidence 344445 577877775 445555433222 1 111 246789999999999999997 5667777666555555556
Q ss_pred HHHhHHHHHHHHHHHHcCCC
Q 007019 581 VRFLTGPAVMAAASIAVGLR 600 (621)
Q Consensus 581 lKll~gPava~~~~~~lGL~ 600 (621)
.-+++.-++.+++.+.+|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~ 113 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWS 113 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 66665555666677788865
No 41
>PRK04972 putative transporter; Provisional
Probab=46.08 E-value=1.1e+02 Score=35.56 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhc-cchHHHHHHHHHHhHHHHHHHHHHH
Q 007019 518 LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIAC-GNSVATFSMAVRFLTGPAVMAAASI 595 (621)
Q Consensus 518 llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~-~~~~~~~~~~lKll~gPava~~~~~ 595 (621)
+.|+++..+ ++.+|+.+ .+-++-+-++++|++.+=+ ++.++. +++..+++.++ .+++-++++++.+
T Consensus 45 ~vgl~~g~~----~~~~~~~~-------~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~ 112 (558)
T PRK04972 45 VVSLLLGQQ----HFSINTDA-------LNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVM-VGSALVIALGLGK 112 (558)
T ss_pred HHHHHHHhC----CCCCChHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445555554 76777654 3577778888999887766 455554 45555555443 4455566777888
Q ss_pred HcCCChhHHHHHHHhccc
Q 007019 596 AVGLRGTLLHVAIVQVII 613 (621)
Q Consensus 596 ~lGL~g~~l~VaIlqAAL 613 (621)
++|++.. ...-++..||
T Consensus 113 ~~~~~~~-~~~G~~aGa~ 129 (558)
T PRK04972 113 LFGWDIG-LTAGMLAGSM 129 (558)
T ss_pred HhCCCHH-HHHHHhhccc
Confidence 9999854 3344444444
No 42
>PRK05326 potassium/proton antiporter; Reviewed
Probab=45.61 E-value=81 Score=36.30 Aligned_cols=92 Identities=14% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHHHHHhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHH
Q 007019 503 MVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAV 581 (621)
Q Consensus 503 ~v~~kLlrNP~i~A~-llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~l 581 (621)
.+.+++ +-|.+.+- ++|+++.-..+.| ++... .+.++.+++.++++.||..|+ .++++.++..++.++....+
T Consensus 23 ~l~~r~-~~P~ll~~il~GillGp~~lg~-i~~~~--~~~~~~i~~l~L~~iLF~~Gl--~~~~~~l~~~~~~~~~la~~ 96 (562)
T PRK05326 23 RLSSRL-GIPSLLLFLAIGMLAGEDGLGG-IQFDN--YPLAYLVGNLALAVILFDGGL--RTRWSSFRPALGPALSLATL 96 (562)
T ss_pred HHHHHc-CCcHHHHHHHHHHHhCccccCC-cccCc--HHHHHHHHHHHHHHHHHcCcc--CCCHHHHHHHHHHHHHHHHH
Confidence 344444 66666655 5667665542221 22222 256789999999999999997 56677777777776555444
Q ss_pred HHhHHHHH-HHHHHHHcCCC
Q 007019 582 RFLTGPAV-MAAASIAVGLR 600 (621)
Q Consensus 582 Kll~gPav-a~~~~~~lGL~ 600 (621)
-.++.=++ ++++.+++|++
T Consensus 97 gv~~t~~~~g~~~~~l~g~~ 116 (562)
T PRK05326 97 GVLITAGLTGLFAHWLLGLD 116 (562)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 44432222 44556777874
No 43
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=45.14 E-value=1.5e+02 Score=36.21 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=51.6
Q ss_pred HhhhHHHHHH-HHHHHHHHhhcCC-----CCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHH
Q 007019 509 IRNPNTYSSL-IGLVWSLIAFRWH-----VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (621)
Q Consensus 509 lrNP~i~A~l-lGl~~~l~~~rwg-----i~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lK 582 (621)
++-|-+.+-+ +|+++.=..+.+- .-+|.--...++.+++.++-+.||.+|+ -++++.++...+.++...+.-
T Consensus 65 l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGL--E~Dl~~lr~~~k~a~~ia~~~ 142 (832)
T PLN03159 65 FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGV--EMDISVIRRTGKKALAIAIAG 142 (832)
T ss_pred cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHhcchHHHHHHHHH
Confidence 4788777754 4555543322211 0123333357999999999999999997 566777777666655444444
Q ss_pred HhHHHHHHHHHHHHcC
Q 007019 583 FLTGPAVMAAASIAVG 598 (621)
Q Consensus 583 ll~gPava~~~~~~lG 598 (621)
+++--++.+++++.++
T Consensus 143 ~ilpf~lg~~~~~~l~ 158 (832)
T PLN03159 143 MALPFCIGLAFSFIFH 158 (832)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4332223344444443
No 44
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=42.37 E-value=1.4e+02 Score=34.40 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=51.6
Q ss_pred HhhhHHHH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhH-H
Q 007019 509 IRNPNTYS-SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT-G 586 (621)
Q Consensus 509 lrNP~i~A-~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~-g 586 (621)
++-|.... .++|+++........+++.+. +.-...+|..||.-|. .++++.++..++....-.+.-.++ .
T Consensus 20 ~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~------~~~~~~Lp~lLF~~g~--~~~~~~l~~~~~~i~~la~~~vlit~ 91 (525)
T TIGR00831 20 IRLPYPIALILAGLLLGLAGLLPEVPLDRE------IVLFLFLPPLLFEAAM--NTDLRELRENFRPIALIAFLLVVVTT 91 (525)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCCCHH------HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35665444 445788776534334444442 2233799999999997 566777777665554333332222 2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhccc
Q 007019 587 PAVMAAASIAVGLRGTLLHVAIVQVII 613 (621)
Q Consensus 587 Pava~~~~~~lGL~g~~l~VaIlqAAL 613 (621)
-++++++.+++| ..+..+++.+|.
T Consensus 92 ~~v~~~~~~~~~---l~~~~alllGai 115 (525)
T TIGR00831 92 VVVGFSLNWILG---IPLALALILGAV 115 (525)
T ss_pred HHHHHHHHHHhc---ccHHHHHHHHHH
Confidence 222333334444 345556666554
No 45
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.70 E-value=1.8e+02 Score=33.93 Aligned_cols=90 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred HHHHHHhhhHHHHHH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHH
Q 007019 504 VWRKLIRNPNTYSSL-IGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (621)
Q Consensus 504 v~~kLlrNP~i~A~l-lGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lK 582 (621)
+.|+ ++-|.+.+-+ +|+++.=..+.| ++-+ +.+..+++-++.+.||.+|+ -++++.+....+..+.....-
T Consensus 23 l~~r-l~~p~ilg~ilaGillGP~~lg~-i~~~----~~i~~laelGvv~LLF~iGL--el~~~~l~~~~~~~~~~g~~~ 94 (601)
T PRK03659 23 LAQR-LGIGAVLGYLLAGIAIGPWGLGF-ISDV----DEILHFSELGVVFLMFIIGL--ELNPSKLWQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHH-hCCChHHHHHHHHHHhccccccC-CCcH----HHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHH
Confidence 4444 5777777764 456654332221 1212 45778999999999999997 566666655554444444444
Q ss_pred HhHHHHHHHHHHHHcCCCh
Q 007019 583 FLTGPAVMAAASIAVGLRG 601 (621)
Q Consensus 583 ll~gPava~~~~~~lGL~g 601 (621)
+++.-++..++.+++|++.
T Consensus 95 v~~t~~~~~~~~~~~g~~~ 113 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSW 113 (601)
T ss_pred HHHHHHHHHHHHHHHccCH
Confidence 4444444555666777763
No 46
>COG3329 Predicted permease [General function prediction only]
Probab=36.75 E-value=5.8e+02 Score=28.25 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcC---CcccchHHHHHHHHHHHHHHHHHHHHH
Q 007019 13 AVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN---DPYAMNFRFIAADTLQKIIMLFVLGIW 89 (621)
Q Consensus 13 aVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~---d~~~mn~~fIla~~l~~llv~l~l~l~ 89 (621)
.+=|..+...+|.+..-. |- +-+.-+.|.+-...+.+=|.=|+.=... +..++-...+...++..++.+.+.+..
T Consensus 15 L~sP~llFf~~Gmlia~~-ks-dl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 15 LLSPTLLFFILGMLIAAF-KS-DLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred hccchHHHHHHHHHHHHH-hc-cccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777788877654 31 3333445555555555555555543333 333333333445555555555444444
Q ss_pred HHHhcCCCchhhHhhhhhcccCcccccHHHHHHHHhccchh
Q 007019 90 TNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSG 130 (621)
Q Consensus 90 ~~~~k~~~l~~~~tvfsLssf~NtgfmGIPLl~ALyGeegl 130 (621)
.++.+-+..| +.... +.|+.+.-.-+.-+....-+.+.
T Consensus 93 ~kl~~vdtvd--aaA~a-g~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 93 RKLPKVDTVD--AAATA-GTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HHccccchHH--HHHHH-hhccchhHHHHHHHHHHHHHcCc
Confidence 4443322222 11111 35666665555555665544443
No 47
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=34.38 E-value=2.5e+02 Score=30.81 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhh-ccchHHHHHHHH
Q 007019 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA-CGNSVATFSMAV 581 (621)
Q Consensus 533 ~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~-~~~~~~~~~~~l 581 (621)
.+|+.+.+.++.+++-.+-++|.++|+ ..+++.++ .+++++..+.+.
T Consensus 269 ~lp~~~~~~l~~~~~~ll~~AmaaiGl--~t~~~~l~~~G~kp~~~g~i~ 316 (335)
T TIGR00698 269 LLPGEVVQALVPLDTFLLATAMAALGL--TTNVSAVKKAGVKPLFASYAG 316 (335)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhh--cCcHHHHHHcCchHHHHHHHH
Confidence 578999999999999999999999997 56665554 566776666544
No 48
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=34.28 E-value=2.1e+02 Score=31.35 Aligned_cols=89 Identities=9% Similarity=0.011 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhh-hccchHHHHHHHHHHhHHHH
Q 007019 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRFLTGPA 588 (621)
Q Consensus 510 rNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i-~~~~~~~~~~~~lKll~gPa 588 (621)
-+++++|.++|++++-. + .-..|+.....++.-++..+=.+..-+|+++. +..+ .-+++.+.... +-.+..=+
T Consensus 31 l~~~~~AillG~~l~n~-~--~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~--~~~i~~~G~~~l~~~~-~~v~~~~~ 104 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT-I--YPQRDEEKKRGVLFAKPFLLRIGITLYGFRLT--FPYIADVGPNEIVADT-LILTSTFF 104 (335)
T ss_pred CcHHHHHHHHHHHHhcc-c--cccchhhccchHHHHHHHHHHHHHHHHCcccc--HHHHHHhhHHHHHHHH-HHHHHHHH
Confidence 56678999999987654 1 22467777788888889999999999998555 4433 33443333322 22333333
Q ss_pred HHHHHH-HHcCCChhHH
Q 007019 589 VMAAAS-IAVGLRGTLL 604 (621)
Q Consensus 589 va~~~~-~~lGL~g~~l 604 (621)
++..+. ..+|++....
T Consensus 105 ~~~~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHHHHhCCChhHH
Confidence 334444 6889876543
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=32.81 E-value=2.2e+02 Score=34.92 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=25.2
Q ss_pred hhhhhhHHHHHHHHHhHHHHHHHhhcCCcccc
Q 007019 36 PDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (621)
Q Consensus 36 ~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~m 67 (621)
.+....+..++..+.+|++.+..=.+.|+..+
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l 344 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI 344 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHh
Confidence 44566788899999999999987777777544
No 50
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=31.51 E-value=3.8e+02 Score=29.70 Aligned_cols=90 Identities=13% Similarity=0.049 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH----hhHHHHHHHHHhhhhh-hcchhhhccc-hHHHHHHHHHHh
Q 007019 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILS----DAGLGMAMFSLGLFMA-LQPKIIACGN-SVATFSMAVRFL 584 (621)
Q Consensus 511 NP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg----~a~lPLaLfSlGlfma-Lq~~~i~~~~-~~~~~~~~lKll 584 (621)
++..|..++|+++..+ |+ +|+-+++..+.++ ...+...|..+|+ + ..++.+..-. ...++-.+.-.+
T Consensus 205 h~~v~mII~~vi~k~~----gl-lp~~i~~~a~~~~~F~~~~lt~~ll~giGl--a~t~l~~L~~a~t~~~vviiv~~Vl 277 (347)
T TIGR00783 205 PAYAFMILIAAALKAF----GL-VPKEIEEGAKMLSQFISKNLTWPLMVGVGV--SYIDLDDLVAALSWQFVVICLSVVV 277 (347)
T ss_pred CHHHHHHHHHHHHHHh----CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHccc--ccCCHHHHHHHhchhHhhhHHHHHH
Confidence 7899999999999999 74 5666666666665 5566777777886 4 3565555444 232333333344
Q ss_pred HHHHHHHHHHHHcCCChhHHHHH
Q 007019 585 TGPAVMAAASIAVGLRGTLLHVA 607 (621)
Q Consensus 585 ~gPava~~~~~~lGL~g~~l~Va 607 (621)
..=+..+++++++|.-+....+.
T Consensus 278 g~ii~s~lvGKllG~YPiE~aIt 300 (347)
T TIGR00783 278 AMILGGAFLGKLMGMYPVESAIT 300 (347)
T ss_pred HHHHHHHHHHHHhCCChHHHHHH
Confidence 44455678899999998887654
No 51
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=31.19 E-value=3.4e+02 Score=30.49 Aligned_cols=101 Identities=17% Similarity=0.085 Sum_probs=60.2
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHH
Q 007019 507 KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTG 586 (621)
Q Consensus 507 kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~g 586 (621)
++..--.....+.|++.....+. +..|....+.-..+ ...+|..||.-|. .+..+.+++.++....-...=.++.
T Consensus 27 ~l~~~~i~~~ll~g~i~g~~~l~--~~~~~~~~~~el~~-~l~l~ilLf~~g~--~l~~~~l~~~~~~I~~La~~~v~it 101 (429)
T COG0025 27 RLLLPEIPLLLLLGLLGGPPGLN--LISPDLELDPELFL-VLFLAILLFAGGL--ELDLRELRRVWRSILVLALPLVLIT 101 (429)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhc--cccccccCChHHHH-HHHHHHHHHHhHh--cCCHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333355555666655533233 33332222222222 8999999999996 7778888888877655444444444
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHhccc
Q 007019 587 PAVMAAASIAVGLRGTLLHVAIVQVII 613 (621)
Q Consensus 587 Pava~~~~~~lGL~g~~l~VaIlqAAL 613 (621)
=++...+.+++ +++..+..+.+.+|.
T Consensus 102 ~~~~g~~~~~l-~~~i~~~~a~l~gAi 127 (429)
T COG0025 102 ALGIGLLAHWL-LPGIPLAAAFLLGAI 127 (429)
T ss_pred HHHHHHHHHHH-hCChhHHHHHHHhHH
Confidence 44444445555 558888888888775
No 52
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=31.16 E-value=2.7e+02 Score=28.57 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHHHHHHHHH
Q 007019 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIA 596 (621)
Q Consensus 533 ~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPava~~~~~~ 596 (621)
.+|++....=-.==..+++++|+.+|+.+-.-..... -...+++.+++=++..|..+-+++.+
T Consensus 29 RfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~~-~slklLLiIvFllLTaPVaSHaIARA 91 (197)
T PRK12585 29 RLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGEG-FNARVLLAVLFIFLTTPVASHLINRA 91 (197)
T ss_pred hcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6787655432222223455666666642210000111 12344566667799999998777554
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=30.88 E-value=2e+02 Score=33.54 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhc-cchHHHHHHHHHHhHHHHHHHHHH-HHcCCChhHH
Q 007019 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIAC-GNSVATFSMAVRFLTGPAVMAAAS-IAVGLRGTLL 604 (621)
Q Consensus 533 ~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~-~~~~~~~~~~lKll~gPava~~~~-~~lGL~g~~l 604 (621)
.+|. .....+.+-++-+-+.++|+.-+-+ +..++. +++..+++.++-++ ..++.++++ ++++++....
T Consensus 440 ~~p~---~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~ 510 (562)
T TIGR03802 440 NIPS---SASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTIL-PLIITMLIGKYVLKYDPALL 510 (562)
T ss_pred ecCH---HHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHH
Confidence 3665 4556677888999999999876654 233333 45555555544433 234566666 7999986543
No 54
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=30.78 E-value=2.5e+02 Score=31.14 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=64.8
Q ss_pred HHHHHHhhhHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHH
Q 007019 504 VWRKLIRNPNTYSSLIGLV-WSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (621)
Q Consensus 504 v~~kLlrNP~i~A~llGl~-~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lK 582 (621)
..-+-++-|.+.+.+++-+ ..- |++..+..-.+.++.+++-++=+-||..|+ -.+++.+++..+...++.+.-
T Consensus 23 ~l~~rl~lp~vlg~llaGiilGp----~~~~~~~~~~~~i~~laelGvi~LlF~~GL--E~~~~~l~~~~~~~~~~~~~~ 96 (397)
T COG0475 23 PLFKRLGLPPVLGYLLAGIILGP----WGLLLIIESSEIIELLAELGVVFLLFLIGL--EFDLERLKKVGRSVGLGVAQV 96 (397)
T ss_pred HHHHHcCCchHHHHHHHHHhcCc----ccccccCCchHHHHHHHHHhHHHHHHHHHH--CcCHHHHHHhchhhhhhHHHH
Confidence 4446678899888876533 221 345556666789999999999999999996 788888887777755555556
Q ss_pred HhHHHHHHHH-HHH-HcCCChhH
Q 007019 583 FLTGPAVMAA-ASI-AVGLRGTL 603 (621)
Q Consensus 583 ll~gPava~~-~~~-~lGL~g~~ 603 (621)
-++.|.+... ..+ .+|++-..
T Consensus 97 ~~~~~~~l~~~~~~~~~g~~~~~ 119 (397)
T COG0475 97 GLTAPFLLGLLLLLGILGLSLIA 119 (397)
T ss_pred HHHHHHHHHHHHHHHHhccChHH
Confidence 6666644443 332 37776543
No 55
>COG2855 Predicted membrane protein [Function unknown]
Probab=30.48 E-value=2.2e+02 Score=31.35 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHHHH
Q 007019 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (621)
Q Consensus 512 P~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPava~ 591 (621)
|++.|.++|+++.. -.+.|+-....++.=++..+.++-.-+|++ +.+..+..--...+...+.-+...=++++
T Consensus 39 al~lAIllGi~l~~-----l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~--ltl~~i~~~G~~~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGI-----LPQIPAQTSAGITFSSKKLLRLGIVLLGFR--LTLSDIADVGGSGVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhc-----cccchhhhccchhhhHHHHHHHHHHHHcce--eeHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 89999999999773 447787888889999999999999999985 44555555555555556666777777788
Q ss_pred HHHHHcCCChhHH
Q 007019 592 AASIAVGLRGTLL 604 (621)
Q Consensus 592 ~~~~~lGL~g~~l 604 (621)
.+...+|++....
T Consensus 112 ~lg~~lgld~~~a 124 (334)
T COG2855 112 FLGKLLGLDKKLA 124 (334)
T ss_pred HHHHHhCCCHHHH
Confidence 8888999986553
No 56
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=30.07 E-value=3.3e+02 Score=30.18 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=59.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHhhHHHH------HHHHHhhhhhhc---chhhhccc
Q 007019 504 VWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS--ILSDAGLGM------AMFSLGLFMALQ---PKIIACGN 572 (621)
Q Consensus 504 v~~kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~--iLg~a~lPL------aLfSlGlfmaLq---~~~i~~~~ 572 (621)
.+.|.+.-=++++.++|+..... .|. +.+.+. ..+...+|+ ||.-.= ...+ .+.....+
T Consensus 11 ~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m--~ki~~~~~~~v~k~~ 80 (342)
T COG0798 11 FLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPM--LKIDFEELKNVFKDP 80 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHH--hcCCHHHHHHHHhcc
Confidence 34444444488888999885544 344 222222 223333333 222211 1233 24455678
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHcCCC-hhHHHHHHHhcccCc
Q 007019 573 SVATFSMAVRFLTGPAVMAAASIAVGLR-GTLLHVAIVQVIINP 615 (621)
Q Consensus 573 ~~~~~~~~lKll~gPava~~~~~~lGL~-g~~l~VaIlqAALP~ 615 (621)
|.+.+++++-++++|++|++++|.+--+ ++...=+|+-+.-|+
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC 124 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPC 124 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999998887644 334444444444443
No 57
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=29.68 E-value=34 Score=37.96 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhhhhhhc-chhhhccchHHHHHHHHHHhHHHHHHHHHHHHcCCChhHHHHHHHhcccCcc
Q 007019 548 AGLGMAMFSLGLFMALQ-PKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPV 616 (621)
Q Consensus 548 a~lPLaLfSlGlfmaLq-~~~i~~~~~~~~~~~~lKll~gPava~~~~~~lGL~g~~l~VaIlqAALP~A 616 (621)
.++...|+++|.-.-++ ++..-+......++++.+++++|+..+..+..+.++.......++..+.+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~ 186 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPG 186 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCC
Confidence 67788999999765555 4555566677788888899999999999998988887775555555555543
No 58
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=29.60 E-value=66 Score=33.63 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=43.1
Q ss_pred ccchHHHHHHHHHHhHHHHHHHHHHHHcCCC---hhHHHHHHHhcccCcccccC
Q 007019 570 CGNSVATFSMAVRFLTGPAVMAAASIAVGLR---GTLLHVAIVQVIINPVRTHA 620 (621)
Q Consensus 570 ~~~~~~~~~~~lKll~gPava~~~~~~lGL~---g~~l~VaIlqAALP~AVta~ 620 (621)
.+|+.-++..+.-+++.|...++++.++... ..++.-.++.+.|||-++.+
T Consensus 81 ~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ 134 (287)
T KOG4821|consen 81 LNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSN 134 (287)
T ss_pred hCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccc
Confidence 4788889999999999999999998888765 45777788999999988754
No 59
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.29 E-value=1.6e+02 Score=31.01 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-----chhhhccchHHHHHHHH
Q 007019 507 KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-----PKIIACGNSVATFSMAV 581 (621)
Q Consensus 507 kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-----~~~i~~~~~~~~~~~~l 581 (621)
++.-.|.+||.++|++++..-+ -...+++.+--.-.+...+.++++-+++.++.. .+++..+|.. ++==+-
T Consensus 18 ~i~llPmlyA~iig~~~~~~~~---~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpAL-ilQE~G 93 (241)
T PF11299_consen 18 KIVLLPMLYALIIGMALGPQKL---KPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPAL-ILQEFG 93 (241)
T ss_pred eeehHHHHHHHHHHHHhcchhh---cccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHH-HHHHhc
Confidence 4556799999999999888833 134455555444444444555554444433322 1222222211 111111
Q ss_pred HHhHHHHHHHHHHHHcCCChhH
Q 007019 582 RFLTGPAVMAAASIAVGLRGTL 603 (621)
Q Consensus 582 Kll~gPava~~~~~~lGL~g~~ 603 (621)
- +--.++++-+++++|++-..
T Consensus 94 n-lGTillaLPiAllLGlkREa 114 (241)
T PF11299_consen 94 N-LGTILLALPIALLLGLKREA 114 (241)
T ss_pred c-hhhHHHHhHHHHHhcccHHh
Confidence 1 23345567777888887654
No 60
>PRK03818 putative transporter; Validated
Probab=29.22 E-value=3.1e+02 Score=32.00 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcc-hhhhcc--chHHHHHHHHHHhHHHHH-H
Q 007019 517 SLIGLVWSLIAFRWH--VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP-KIIACG--NSVATFSMAVRFLTGPAV-M 590 (621)
Q Consensus 517 ~llGl~~~l~~~rwg--i~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~-~~i~~~--~~~~~~~~~lKll~gPav-a 590 (621)
.+.|+++..+..+.+ +.+|. .....+.+-++-+-+.++|+.-+-++ +.+... ++..+++.++ .+.|++ +
T Consensus 407 L~~gl~~g~~~~~~~~~~~~p~---~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v--~~~~~~~~ 481 (552)
T PRK03818 407 LIVALILGRIGSIGKLYWFMPP---SANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLI--TAVPLLIV 481 (552)
T ss_pred HHHHHHHHhccCCCCceeecCH---HHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHH--HHHHHHHH
Confidence 345566666544322 34776 45556667778888889998766543 332333 4444444443 334444 4
Q ss_pred HHH-HHHcCCChhHHHHHHHhccc
Q 007019 591 AAA-SIAVGLRGTLLHVAIVQVII 613 (621)
Q Consensus 591 ~~~-~~~lGL~g~~l~VaIlqAAL 613 (621)
+++ .++++++.... .-.+..|+
T Consensus 482 ~~~~~~~~~~~~~~~-~G~~aG~~ 504 (552)
T PRK03818 482 GILARMLAKMNYLTL-CGMLAGSM 504 (552)
T ss_pred HHHHHHHHcCCHHHH-HHHHhccC
Confidence 444 48899986633 33343443
No 61
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=28.78 E-value=3.6e+02 Score=30.60 Aligned_cols=84 Identities=10% Similarity=0.006 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCcCChh---hhhhHHHHHHHHHhHHHHHH-HhhcCCcccc----hHHHHHHHHHHHHHHHHHHH
Q 007019 16 PLYVAMILAYGSVRWWKIFSPD---QCSGINRFVAIFAVPLLSFH-FISTNDPYAM----NFRFIAADTLQKIIMLFVLG 87 (621)
Q Consensus 16 PLFvlI~LGYll~R~wgift~e---~~~~LNrfV~~VaLPaLLF~-sIs~~d~~~m----n~~fIla~~l~~llv~l~l~ 87 (621)
|-|+.|.+=-.+.|..++++++ .++...+|+.+-..+.+++- .+..+|++++ ++.+++......+.+.+..+
T Consensus 272 h~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~ 351 (414)
T PF03390_consen 272 HAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAF 351 (414)
T ss_pred cHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555888865 56678899988888888876 6766888764 55555443333333333334
Q ss_pred HHHHHhcCCCch
Q 007019 88 IWTNFTKNGSLE 99 (621)
Q Consensus 88 l~~~~~k~~~l~ 99 (621)
+..++.+--..|
T Consensus 352 ~vG~l~g~YPvE 363 (414)
T PF03390_consen 352 LVGKLVGFYPVE 363 (414)
T ss_pred HHHHHhCCChHH
Confidence 444444433344
No 62
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=28.39 E-value=3.9e+02 Score=25.66 Aligned_cols=100 Identities=12% Similarity=0.006 Sum_probs=56.7
Q ss_pred HHHHhhh--H-HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhccchHHHHHHHH
Q 007019 506 RKLIRNP--N-TYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIACGNSVATFSMAV 581 (621)
Q Consensus 506 ~kLlrNP--~-i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~~~~~~~~~~l 581 (621)
-+.++-| . +-+.+++.++++.... ++++|.++.+..+++-.. .+|..+... ++.+.+.+...+...++
T Consensus 14 ~~~l~~Pa~~llG~mi~~~~~~~~~~~-~~~~P~~~~~~~qviiG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~ 85 (156)
T TIGR03082 14 ASLLGLPAAWLLGPLLAGAVLSLAGGL-EITLPPWLLALAQVVIGI-------LIGSRFTREVLAELKRLWPAALLSTVL 85 (156)
T ss_pred HHHHCCCcHHHHHHHHHHHHHHhcCCc-cCCCCHHHHHHHHHHHHH-------HHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3556766 3 3344445566655222 577898766554443222 234322211 33455555666666677
Q ss_pred HHhHHHHHHHHHHHHcCCChhHHHHHHHhcccCccc
Q 007019 582 RFLTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVR 617 (621)
Q Consensus 582 Kll~gPava~~~~~~lGL~g~~l~VaIlqAALP~AV 617 (621)
=+++.=+.++.+.++.|++.... +.+.+|-+.
T Consensus 86 ~l~~~~~~~~~l~~~~~~~~~ta----~La~~PGGl 117 (156)
T TIGR03082 86 LLALSALLAWLLARLTGVDPLTA----FLATSPGGA 117 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHH----HHHhCCchH
Confidence 77777777888888888776544 455666443
No 63
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=28.19 E-value=3.1e+02 Score=31.04 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=64.4
Q ss_pred HhhhHHHHH-HHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHH
Q 007019 509 IRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGP 587 (621)
Q Consensus 509 lrNP~i~A~-llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gP 587 (621)
+.-|....| +.|++...+ .+ -...+...+++++.+|+.++.+- +++++ |++++-.+..-+.+.++.+++..+++-
T Consensus 246 ~~lP~fv~~lfvgiIvrni-~~-~~~~~~v~~~~v~~ig~vsL~lf-lamAL-mSlkLweL~~l~lpl~viL~vQ~i~m~ 321 (404)
T COG0786 246 LALPLFVMCLFVGVILRNI-LD-LLKKYRVFRRAVDVIGNVSLSLF-LAMAL-MSLKLWELADLALPLLVILAVQTIVMA 321 (404)
T ss_pred ccccHHHHHHHHHHHHHhH-HH-HhccccccHHHHHHHhhhHHHHH-HHHHH-HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345665544 556776666 33 33555588899999999999874 46676 888888888888888888888888887
Q ss_pred HHHHHH-HHHcCCChhHH
Q 007019 588 AVMAAA-SIAVGLRGTLL 604 (621)
Q Consensus 588 ava~~~-~~~lGL~g~~l 604 (621)
+.++.+ -..+|=+-+..
T Consensus 322 lfa~fvtfr~mG~~YdAa 339 (404)
T COG0786 322 LFAIFVTFRLMGKNYDAA 339 (404)
T ss_pred HHHHHHHHHHhCcchhHH
Confidence 775555 44555444433
No 64
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=27.81 E-value=4.4e+02 Score=29.33 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhhH---HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc-chhhhccchHHH
Q 007019 501 LIMVWRKLIRNPN---TYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ-PKIIACGNSVAT 576 (621)
Q Consensus 501 l~~v~~kLlrNP~---i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq-~~~i~~~~~~~~ 576 (621)
+.-...+++|.|. .-+.++|.+++... --++++|.|+....+.+-. -.+|..+..+ ++...+.....+
T Consensus 199 ~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~~~~lP~wl~~va~~~iG-------~~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 199 LGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GITIQLPAWLLAVAQALIG-------ALIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ceeeeCCHHHHHHHHHHHH-------HHHcccccHHHHHHhHhhcchHH
Confidence 3445668899985 44667778888874 2278999988755444333 2346555544 455555566666
Q ss_pred HHHHHHHhHHHHHHHHHHHHcCCChhH
Q 007019 577 FSMAVRFLTGPAVMAAASIAVGLRGTL 603 (621)
Q Consensus 577 ~~~~lKll~gPava~~~~~~lGL~g~~ 603 (621)
+..+.=+++.-.+++++++..+++-..
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~t 297 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNT 297 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 777777777777888889988876543
No 65
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.27 E-value=2.4e+02 Score=32.48 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHH
Q 007019 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (621)
Q Consensus 510 rNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPav 589 (621)
-++.+-|.++|++++-. ++-..+.+.+.-+.+.-+|+-.+++|+ .+++..+...+...+...++.++.-.+.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~--~~d~~~l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGM--LFDPMILIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888886643 233344443444567889999999996 4556555444444455556677777788
Q ss_pred HHHHHHHcCCC
Q 007019 590 MAAASIAVGLR 600 (621)
Q Consensus 590 a~~~~~~lGL~ 600 (621)
.++.+..+|.+
T Consensus 320 ~~~~~~~~g~~ 330 (558)
T PRK10669 320 AFFLVRLFGHS 330 (558)
T ss_pred HHHHHHHhCCC
Confidence 88888888765
No 66
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.00 E-value=59 Score=28.35 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHH
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRF 45 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrf 45 (621)
++..|.+++-+.+.|.+||+..|+ -+ .-.|.+|..+
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~krk-~I--~GSCGGi~al 39 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKRK-SI--KGSCGGIAAL 39 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheecc-cc--ccccccHHhh
Confidence 456777888888999999999997 32 3457777654
No 67
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=25.86 E-value=4.5e+02 Score=25.54 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH-HHHhhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHH-H
Q 007019 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS-ILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTG-P 587 (621)
Q Consensus 510 rNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~-iLg~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~g-P 587 (621)
.+-++=++++|+++-++.+-+++--+++++...+ +|...++=..=-+||+ |. ++..+...+...++.+++--++. -
T Consensus 30 l~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPagVGi-m~-~~~ll~~~~~~Il~~ivvSTllvl~ 107 (141)
T PRK04125 30 LPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTNNIGFLFVPSGISV-IN-SLGVMSQYPVQIIGVIIVATILLLA 107 (141)
T ss_pred cCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhHhHH-HH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455668888988888777788888888888774 4555555444456776 33 56777766666655554444333 3
Q ss_pred HHHHHHHHHcC
Q 007019 588 AVMAAASIAVG 598 (621)
Q Consensus 588 ava~~~~~~lG 598 (621)
+.++..-++.+
T Consensus 108 vtg~v~~~l~r 118 (141)
T PRK04125 108 CTGLFSQFILG 118 (141)
T ss_pred HHHHHHHHHHH
Confidence 33333334333
No 68
>PRK05326 potassium/proton antiporter; Reviewed
Probab=25.73 E-value=8.4e+02 Score=28.13 Aligned_cols=48 Identities=8% Similarity=-0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCCcccc
Q 007019 19 VAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (621)
Q Consensus 19 vlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d~~~m 67 (621)
.+...|...... +....+........+.+++.|.+.+..=...++..+
T Consensus 249 a~~iaGl~l~n~-~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l 296 (562)
T PRK05326 249 AVYLAGLVLGNR-PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRL 296 (562)
T ss_pred HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344667777665 444445566677777788888765554344455443
No 69
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.05 E-value=4.2e+02 Score=32.29 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHH---HH---hhHHHHHHHHHhhhhhhcchhhhcc
Q 007019 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHV--SMPKIIEKSISI---LS---DAGLGMAMFSLGLFMALQPKIIACG 571 (621)
Q Consensus 500 il~~v~~kLlrNP~i~A~llGl~~~l~~~rwgi--~lP~~l~~sl~i---Lg---~a~lPLaLfSlGlfmaLq~~~i~~~ 571 (621)
-+-.+.|+|++||+..-++++-+.-...+. |. -+|++|+.=..+ .+ -+.+.+-.+++|.+++ ..+-..
T Consensus 380 dfp~s~~~ll~N~if~~~~l~~~~~~~~~~-G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lG---G~iikk 455 (735)
T KOG3626|consen 380 DFPKSIKRLLSNPIFMLVVLASVIESLAIT-GYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLG---GLIIKK 455 (735)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHh-hHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhcc---ceeeee
Confidence 345678999999999999888665555444 32 478888764322 11 1223334567777666 444444
Q ss_pred chHHHHH
Q 007019 572 NSVATFS 578 (621)
Q Consensus 572 ~~~~~~~ 578 (621)
.+.-.-+
T Consensus 456 fkl~~r~ 462 (735)
T KOG3626|consen 456 FKLSARG 462 (735)
T ss_pred ecccHHH
Confidence 4444333
No 70
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=25.01 E-value=1.1e+02 Score=33.39 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhHHHHHHHHHHHHcCCChh
Q 007019 547 DAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGT 602 (621)
Q Consensus 547 ~a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~gPava~~~~~~lGL~g~ 602 (621)
.+.+.+-+||+|. .+++|....-.++...-.+.|++++-++.+++...+|.+|.
T Consensus 48 ~~il~~~~~~~Ga--~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~ 101 (312)
T PRK12460 48 APLLGAFLLCMGA--QISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGI 101 (312)
T ss_pred HHHHHHHHHHhcC--eeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccc
Confidence 4567788999998 45677666667777777789999999999999999998874
No 71
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=24.84 E-value=1.7e+02 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q 007019 502 IMVWRKLIRNPNTYSSLIGLVWSLI 526 (621)
Q Consensus 502 ~~v~~kLlrNP~i~A~llGl~~~l~ 526 (621)
....-.++.-|...|.++|++|.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788999999999998776
No 72
>COG2855 Predicted membrane protein [Function unknown]
Probab=24.71 E-value=4.7e+02 Score=28.90 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcch-hhhccchHHHHHH
Q 007019 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPK-IIACGNSVATFSM 579 (621)
Q Consensus 533 ~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~-~i~~~~~~~~~~~ 579 (621)
-+|+-+.+.+..++.-.+-|+|.++|+ ..+.+ .++.+.|+++++.
T Consensus 271 ~iP~~~~~~~~~lst~ll~~aMaAlGL--~t~i~~l~~~G~kpl~la~ 316 (334)
T COG2855 271 LIPAEVVSALVTLSTFLLAMAMAALGL--TTHIKALKKAGGKPLLLAL 316 (334)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhcc--ccCHHHHHHcCccHHHHHH
Confidence 479999999999999999999999997 45544 4445566555544
No 73
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=24.65 E-value=2e+02 Score=28.98 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhc
Q 007019 515 YSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (621)
Q Consensus 515 ~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq 564 (621)
.+.++|+++... ... + .+..+.+.+..+=+.||.+|+.++.+
T Consensus 3 ~~li~Gi~lG~~----~~~-~---~~~~~~~~~~~L~lLLF~VGi~lG~~ 44 (191)
T PF03956_consen 3 IALILGILLGYF----LRP-P---FSLIDKISTYALYLLLFLVGIDLGSN 44 (191)
T ss_pred eeHHHHHHHHHH----hcc-c---ccccccHHHHHHHHHHHHHHHHhcCC
Confidence 345667776666 211 1 12226778888999999999988855
No 74
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=23.87 E-value=5.4e+02 Score=28.54 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=62.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh-hHHHHHHHHHhhhhhhcchhhhccchHHHHHHHHHHhH
Q 007019 507 KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSD-AGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (621)
Q Consensus 507 kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~-a~lPLaLfSlGlfmaLq~~~i~~~~~~~~~~~~lKll~ 585 (621)
.+=-++.+=|-++|++++-...| . .-+++-++-+++ --+|+-.+++|+ .++++.+...+..+++...+=.+.
T Consensus 240 ~~gls~ilGAFlaGl~ls~~~~~----~-~~l~~~i~~~~~~~fiplFFi~vG~--~~dl~~l~~~~~~~l~~~~~~i~~ 312 (397)
T COG0475 240 LLGLSMILGAFLAGLLLSESEYR----K-HELEEKIEPFGDGLFIPLFFISVGM--SLDLGVLLENLLLILLLVALAILG 312 (397)
T ss_pred HhChhHHHHHHHHHHHhcccccc----h-HHHHHHHHhHHhHHHHHHHHHHhhH--HcCHHHHhccHHHHHHHHHHHHHH
Confidence 33446777788889998877332 1 578889999999 999999999995 788888888887744444333344
Q ss_pred HHHHHHHHHHHcCCC
Q 007019 586 GPAVMAAASIAVGLR 600 (621)
Q Consensus 586 gPava~~~~~~lGL~ 600 (621)
-=+..++.++.+|.+
T Consensus 313 K~~~~~~~~~~~g~~ 327 (397)
T COG0475 313 KILGAYLAARLLGFS 327 (397)
T ss_pred HHHHHHHHHHHHcCc
Confidence 444566667777743
No 75
>COG4393 Predicted membrane protein [Function unknown]
Probab=22.01 E-value=5.8e+02 Score=28.51 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHHHhhcCC
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTND 63 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~sIs~~d 63 (621)
+.+++.+++|+-+++++-| .++ - ..-..++.++++=+-.|.++..+.
T Consensus 5 Fvs~Lqs~LP~alLlg~~w--~~~-p-------~~~~~~vvwl~~L~~~~g~~~~~y 51 (405)
T COG4393 5 FVSFLQSVLPLALLLGITW--NKK-P-------IFKSFFVVWLGFLFGYFGFFIAAY 51 (405)
T ss_pred HHHHHHHHHHHHHHHcCCc--ccc-c-------chhHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999988776433 222 1 134567888888888887665553
Done!