Query 007019
Match_columns 621
No_of_seqs 413 out of 1498
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.8 6E-05 2.1E-09 78.7 10.9 103 507-619 14-119 (332)
2 3zux_A Transporter, ASBTNM; tr 93.2 1.5 5.1E-05 45.6 14.8 120 16-143 174-302 (332)
3 3if4_A Integron cassette prote 11.2 75 0.0026 28.3 1.0 17 190-206 26-42 (119)
4 4ev6_A Magnesium transport pro 11.1 2.5E+02 0.0087 28.5 5.2 21 47-67 286-306 (339)
5 2lat_A Dolichyl-diphosphooligo 10.2 3E+02 0.01 20.1 3.7 26 1-26 1-26 (37)
6 3rhw_A Avermectin-sensitive gl 10.0 6.3E+02 0.022 25.5 7.7 24 7-30 214-237 (347)
7 2iub_A CORA, divalent cation t 9.3 1.9E+02 0.0066 29.7 3.5 22 46-67 309-330 (363)
8 2gsm_B Cytochrome C oxidase su 8.3 4.4E+02 0.015 26.3 5.6 26 5-30 33-58 (262)
9 2dls_A PDZ-rhogef, RHO guanine 7.7 1.5E+02 0.005 24.1 1.4 48 165-212 37-89 (93)
10 3s0x_A Peptidase A24B, FLAK do 7.6 1.5E+03 0.051 22.3 13.8 25 132-156 122-146 (237)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.84 E-value=6e-05 Score=78.72 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=82.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhHHHHHHHHHhhhhhhcchhhh---ccchHHHHHHHHHH
Q 007019 507 KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA---CGNSVATFSMAVRF 583 (621)
Q Consensus 507 kLlrNP~i~A~llGl~~~l~~~rwgi~lP~~l~~sl~iLg~a~lPLaLfSlGlfmaLq~~~i~---~~~~~~~~~~~lKl 583 (621)
+.+.++.++..++++++++. -=+...+ ++..-..+++++||+.|+ .++++.++ .+++...++.+.++
T Consensus 14 ~~l~~~~~l~i~~~~~lg~~----~P~~~~~----~~~~i~~~l~~~mf~~G~--~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 14 SFIGKTFSLWAALFAAAAFF----APDTFKW----AGPYIPWLLGIIMFGMGL--TLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp HHHHHTHHHHHHHHHHHHHH----CGGGTGG----GGGGHHHHHHHHHHHHHH--HCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----cchhhhh----hHHHHHHHHHHHHHHHHh--CCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 55678999999999888877 2122222 233445689999999997 55555555 77888899999999
Q ss_pred hHHHHHHHHHHHHcCCChhHHHHHHHhcccCccccc
Q 007019 584 LTGPAVMAAASIAVGLRGTLLHVAIVQVIINPVRTH 619 (621)
Q Consensus 584 l~gPava~~~~~~lGL~g~~l~VaIlqAALP~AVta 619 (621)
+++|++++++++++++++......++.+++|+++.+
T Consensus 84 vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 84 AIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHH
Confidence 999999999999999999999999999999998754
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.18 E-value=1.5 Score=45.57 Aligned_cols=120 Identities=9% Similarity=0.035 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhcCcCChhhhhhHHHHHHHHHhHHHHHH---HhhcCCcccc---hHHHHHHHHHHHHHHHHHHHHH
Q 007019 16 PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFH---FISTNDPYAM---NFRFIAADTLQKIIMLFVLGIW 89 (621)
Q Consensus 16 PLFvlI~LGYll~R~wgift~e~~~~LNrfV~~VaLPaLLF~---sIs~~d~~~m---n~~fIla~~l~~llv~l~l~l~ 89 (621)
-+++=+++|.+++++++-. .+.+.+..-.++.-++++. .++.+ .+.+ ....+....+..++.+++.+..
T Consensus 174 ~vllP~~lG~l~r~~~~~~----~~~~~~~l~~~s~~~illiv~~~~~~~-~~~~~~~~~~v~~~~~l~~~~~~~lg~~~ 248 (332)
T 3zux_A 174 MVLLPIVLGLIVHKVLGSK----TEKLTDALPLVSVAAIVLIIGAVVGAS-KGKIMESGLLIFAVVVLHNGIGYLLGFFA 248 (332)
T ss_dssp HTHHHHHHHHHHHHHHGGG----GHHHHTTHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHhHHHHHhh-hHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3555567888888874322 2333333333333333332 22222 2222 2222222233333344444444
Q ss_pred HHHhcCCCchhhHhhhhh-cccCcccccHHHHHHHHhcc--chhhHHHHHHHHHHHH
Q 007019 90 TNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGE--YSGSLMVQVVVLQCII 143 (621)
Q Consensus 90 ~~~~k~~~l~~~~tvfsL-ssf~NtgfmGIPLl~ALyGe--egl~l~a~ivvvq~II 143 (621)
.+..+.+..+ ....++ ++.-|+ -+|+++....||+ ......+++.+.|.+.
T Consensus 249 ~r~~~~~~~~--~~ti~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 249 AKWTGLPYDA--QKALTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHTTCCHHH--HHHHHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHhH--hhhhhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 5544433223 233334 556777 5999999999963 3334555666666554
No 3
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=11.16 E-value=75 Score=28.28 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.3
Q ss_pred cccccccCCCCceEEEE
Q 007019 190 LETDAEIGDDGKLHVTV 206 (621)
Q Consensus 190 ~~~~ae~~~~g~~~v~v 206 (621)
+-+.-||++.||||||-
T Consensus 26 ~ia~IEvd~~Grihv~p 42 (119)
T 3if4_A 26 FVAAIEIDGTGRIHVTP 42 (119)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred HHHHeeeccCCcEEEee
Confidence 44567999999999997
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=11.10 E-value=2.5e+02 Score=28.48 Aligned_cols=21 Identities=5% Similarity=-0.225 Sum_probs=15.5
Q ss_pred HHHHhHHHHHHHhhcCCcccc
Q 007019 47 AIFAVPLLSFHFISTNDPYAM 67 (621)
Q Consensus 47 ~~VaLPaLLF~sIs~~d~~~m 67 (621)
.-+.+|.-++.+++..|...|
T Consensus 286 t~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 286 TTIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHhhccCcCCCC
Confidence 345678888888998887644
No 5
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=10.20 E-value=3e+02 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007019 1 MITWKDLYLVLTAVVPLYVAMILAYG 26 (621)
Q Consensus 1 mi~~~dm~~VLsaVlPLFvlI~LGYl 26 (621)
|||-.+++.+.+.+--..+++.+.|=
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlYH 26 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLYH 26 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988776665555555555553
No 6
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=9.96 E-value=6.3e+02 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~ 30 (621)
.+.+++.++|.++++++-++.-..
T Consensus 214 ~~y~~~l~iP~~li~~ls~~sF~l 237 (347)
T 3rhw_A 214 SFYLLQLYIPSCMLVIVSWVSFWF 237 (347)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTS
T ss_pred eEEEEEeehhHHHHHHHhheEEec
Confidence 467888999999999988776654
No 7
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=9.35 E-value=1.9e+02 Score=29.70 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHhhcCCcccc
Q 007019 46 VAIFAVPLLSFHFISTNDPYAM 67 (621)
Q Consensus 46 V~~VaLPaLLF~sIs~~d~~~m 67 (621)
+.-+.+|.-++.+++..|+..|
T Consensus 309 it~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 309 IATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHhhhcccCCCC
Confidence 3445677777777887777644
No 8
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=8.35 E-value=4.4e+02 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007019 5 KDLYLVLTAVVPLYVAMILAYGSVRW 30 (621)
Q Consensus 5 ~dm~~VLsaVlPLFvlI~LGYll~R~ 30 (621)
+|..-++..++-+++..++.|.+.|.
T Consensus 33 ~~~~~~i~~~I~v~V~~ll~~~~~r~ 58 (262)
T 2gsm_B 33 DGFILVIIAAITIFVTLLILYAVWRF 58 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555666666666554
No 9
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=7.67 E-value=1.5e+02 Score=24.07 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=31.7
Q ss_pred hhhhhhcceeeeeccceeecCCCccccc-----ccccCCCCceEEEEeeccCC
Q 007019 165 FPETAASIVSFKVDSDVVSLDGRDFLET-----DAEIGDDGKLHVTVRKSNAS 212 (621)
Q Consensus 165 f~~ta~si~s~~~~~~v~sl~g~~~~~~-----~ae~~~~g~~~v~vr~s~~s 212 (621)
.++..|.-+-++....++++||++.-.. -..+....++.++|+|....
T Consensus 37 ~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~g~~v~l~v~R~~~~ 89 (93)
T 2dls_A 37 RPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSSG 89 (93)
T ss_dssp CSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHTSSSEEEEEEECCCCC
T ss_pred CCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcCCCEEEEEEEECCCC
Confidence 3444444455888999999999663221 12345678899999986643
No 10
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=7.59 E-value=1.5e+03 Score=22.26 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 007019 132 LMVQVVVLQCIIWYTLLLFLFEYRG 156 (621)
Q Consensus 132 l~a~ivvvq~II~~TLgl~Lle~~~ 156 (621)
+.+..+.+-..+.+++.+++-...+
T Consensus 122 ~tvl~Nsvl~~i~~pl~~~~~Nl~~ 146 (237)
T 3s0x_A 122 IMVFINGIFFMVFLPFVILFRNILN 146 (237)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444556777777665543
Done!