Query 007019
Match_columns 621
No_of_seqs 413 out of 1498
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 15:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007019.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007019hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u00a2 b.130.1.1 (A:389-503) 21.6 33 0.0024 28.2 3.6 41 171-211 62-102 (115)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 16.5 3.4E+02 0.025 24.1 12.8 21 10-30 292-312 (447)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 15.4 61 0.0045 20.6 2.9 19 511-529 6-24 (30)
4 d1dkza2 b.130.1.1 (A:389-506) 13.1 63 0.0046 26.5 3.3 41 171-211 65-105 (118)
5 d1xrda1 f.3.1.1 (A:1-52) Light 7.5 2.1E+02 0.016 20.5 4.0 9 29-37 3-11 (52)
6 d2iuba2 f.17.3.1 (A:286-349) M 7.4 1.7E+02 0.012 21.0 3.5 22 45-66 11-32 (64)
7 d1oedc_ f.36.1.1 (C:) Acetylch 6.8 1.8E+02 0.013 25.3 4.2 24 7-30 2-25 (260)
8 d1pv7a_ f.38.1.2 (A:) Lactose 6.7 6.5E+02 0.048 21.1 14.4 10 116-125 364-373 (417)
9 d2nqra1 b.85.6.1 (A:327-409) M 6.0 2E+02 0.014 21.5 3.4 35 175-209 7-42 (83)
10 d2faza1 d.15.1.1 (A:1-76) Ubiq 5.5 1.2E+02 0.0088 22.5 1.8 20 190-209 57-76 (76)
No 1
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=21.60 E-value=33 Score=28.23 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=31.7
Q ss_pred cceeeeeccceeecCCCcccccccccCCCCceEEEEeeccC
Q 007019 171 SIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNA 211 (621)
Q Consensus 171 si~s~~~~~~v~sl~g~~~~~~~ae~~~~g~~~v~vr~s~~ 211 (621)
-|..|.++..--.-.|..+++-.-+++.||.|||+++--.+
T Consensus 62 ~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~t 102 (115)
T d1u00a2 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKST 102 (115)
T ss_dssp EEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred EeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECCC
Confidence 35566776655555777889999999999999999986553
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.45 E-value=3.4e+02 Score=24.05 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007019 10 VLTAVVPLYVAMILAYGSVRW 30 (621)
Q Consensus 10 VLsaVlPLFvlI~LGYll~R~ 30 (621)
.+..+.-++..+..|++..|.
T Consensus 292 ~~~~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 292 FLYEYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hcchhhhhhhhhhhhhhhhhc
Confidence 333444455556667777766
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.44 E-value=61 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 007019 511 NPNTYSSLIGLVWSLIAFR 529 (621)
Q Consensus 511 NP~i~A~llGl~~~l~~~r 529 (621)
--+|.||++|+.+-.+-||
T Consensus 6 yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3468999999988777566
No 4
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=13.14 E-value=63 Score=26.53 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=30.4
Q ss_pred cceeeeeccceeecCCCcccccccccCCCCceEEEEeeccC
Q 007019 171 SIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNA 211 (621)
Q Consensus 171 si~s~~~~~~v~sl~g~~~~~~~ae~~~~g~~~v~vr~s~~ 211 (621)
.|..|.++..--.--|...++-.-+++.||.|||+.+--.+
T Consensus 65 ~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~t 105 (118)
T d1dkza2 65 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNS 105 (118)
T ss_dssp EEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETTT
T ss_pred EEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECCC
Confidence 46667776544444677678888999999999999976543
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.54 E-value=2.1e+02 Score=20.50 Aligned_cols=9 Identities=44% Similarity=1.339 Sum_probs=4.7
Q ss_pred HhcCcCChh
Q 007019 29 RWWKIFSPD 37 (621)
Q Consensus 29 R~wgift~e 37 (621)
|.|.+||+.
T Consensus 3 kiW~~fDPR 11 (52)
T d1xrda1 3 RIWQLFDPR 11 (52)
T ss_dssp GGGGTSSHH
T ss_pred eeeeEecHH
Confidence 345666653
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=7.41 E-value=1.7e+02 Score=20.97 Aligned_cols=22 Identities=18% Similarity=0.018 Sum_probs=12.2
Q ss_pred HHHHHHhHHHHHHHhhcCCccc
Q 007019 45 FVAIFAVPLLSFHFISTNDPYA 66 (621)
Q Consensus 45 fV~~VaLPaLLF~sIs~~d~~~ 66 (621)
.+.-+.+|.-++.++...+...
T Consensus 11 ~it~iflP~t~i~gifGMN~~~ 32 (64)
T d2iuba2 11 IIATIFMPLTFIAGIYGMNFEY 32 (64)
T ss_dssp HHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHHHhhhccCCCC
Confidence 4456777888888887766553
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.82 E-value=1.8e+02 Score=25.33 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007019 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (621)
Q Consensus 7 m~~VLsaVlPLFvlI~LGYll~R~ 30 (621)
+|.+++.++|.+++.++-++.-..
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFYL 25 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHeee
Confidence 467888999998888887776554
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.70 E-value=6.5e+02 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.155 Sum_probs=4.1
Q ss_pred cHHHHHHHHh
Q 007019 116 MGIPLLIAMY 125 (621)
Q Consensus 116 mGIPLl~ALy 125 (621)
+|-++.-.++
T Consensus 364 i~~~~~G~l~ 373 (417)
T d1pv7a_ 364 FMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444433444
No 9
>d2nqra1 b.85.6.1 (A:327-409) Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.98 E-value=2e+02 Score=21.46 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=26.5
Q ss_pred eeeccceeecCCC-cccccccccCCCCceEEEEeec
Q 007019 175 FKVDSDVVSLDGR-DFLETDAEIGDDGKLHVTVRKS 209 (621)
Q Consensus 175 ~~~~~~v~sl~g~-~~~~~~ae~~~~g~~~v~vr~s 209 (621)
.++..++-+=.|| |++....+.++||++.|+.-..
T Consensus 7 a~l~~~i~k~~gr~~f~R~~l~~~~~G~~~v~~~~~ 42 (83)
T d2nqra1 7 VRTASRLKKTPGRLDFQRGVLQRNADGELEVTTTGH 42 (83)
T ss_dssp EEESSCBCCCTTSEEEEEEEEEECTTSCEEEEECSC
T ss_pred EEcCCccCCCCCCcEEEEEEEEECCCCCEEEEECCC
Confidence 4566677666674 4788999999999999887544
No 10
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=1.2e+02 Score=22.49 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.9
Q ss_pred cccccccCCCCceEEEEeec
Q 007019 190 LETDAEIGDDGKLHVTVRKS 209 (621)
Q Consensus 190 ~~~~ae~~~~g~~~v~vr~s 209 (621)
...|..|.++--||+++|+|
T Consensus 57 tL~~y~I~~~sti~lv~r~s 76 (76)
T d2faza1 57 TLFDYEVRLNDTIQLLVRQS 76 (76)
T ss_dssp BTTTTTCCTTCEEEEEECCC
T ss_pred cHHHcCCCCCCEEEEEEEcC
Confidence 45678899999999999986
Done!