Query 007021
Match_columns 621
No_of_seqs 140 out of 160
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 17:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03468 XS: XS domain; Inter 100.0 8.1E-45 1.8E-49 328.8 6.2 115 324-445 1-115 (116)
2 PF03470 zf-XS: XS zinc finger 99.4 6.3E-14 1.4E-18 107.9 1.7 36 254-292 1-43 (43)
3 KOG1029 Endocytic adaptor prot 94.9 0.79 1.7E-05 54.2 16.1 113 504-617 479-619 (1118)
4 PF14988 DUF4515: Domain of un 94.8 1 2.2E-05 45.5 14.8 127 476-605 4-131 (206)
5 COG3883 Uncharacterized protei 93.9 5.7 0.00012 42.0 18.4 127 474-605 50-188 (265)
6 KOG0995 Centromere-associated 93.1 3 6.6E-05 48.0 15.8 64 544-607 313-382 (581)
7 PF13851 GAS: Growth-arrest sp 92.8 8.8 0.00019 38.6 17.2 159 452-614 9-178 (201)
8 PRK11637 AmiB activator; Provi 92.4 10 0.00022 41.6 18.6 55 473-527 72-126 (428)
9 KOG1029 Endocytic adaptor prot 87.9 4.9 0.00011 47.9 11.7 63 505-573 532-598 (1118)
10 PRK11637 AmiB activator; Provi 87.1 30 0.00065 38.1 16.8 38 481-518 73-110 (428)
11 PRK12705 hypothetical protein; 87.1 28 0.00061 40.0 17.0 70 541-618 125-198 (508)
12 PF09726 Macoilin: Transmembra 85.9 17 0.00038 43.1 15.0 74 452-525 429-502 (697)
13 PF05667 DUF812: Protein of un 83.5 39 0.00085 39.5 16.2 106 474-584 326-432 (594)
14 KOG1265 Phospholipase C [Lipid 83.0 18 0.00039 44.1 13.4 30 231-260 600-629 (1189)
15 COG5185 HEC1 Protein involved 82.1 47 0.001 38.2 15.4 53 557-610 365-420 (622)
16 PF14259 RRM_6: RNA recognitio 81.8 5.5 0.00012 31.7 6.3 58 334-401 1-60 (70)
17 KOG0163 Myosin class VI heavy 80.2 15 0.00032 44.2 11.2 42 540-581 941-982 (1259)
18 PF10446 DUF2457: Protein of u 79.5 1 2.2E-05 50.4 1.8 8 458-465 386-393 (458)
19 PF10446 DUF2457: Protein of u 79.2 1.1 2.3E-05 50.2 1.8 15 455-469 387-401 (458)
20 TIGR03319 YmdA_YtgF conserved 78.6 66 0.0014 36.9 15.7 121 489-618 75-204 (514)
21 PF12128 DUF3584: Protein of u 78.5 64 0.0014 40.5 16.7 39 565-603 726-764 (1201)
22 PF00076 RRM_1: RNA recognitio 77.8 6.2 0.00013 30.6 5.3 55 334-398 1-57 (70)
23 PF05605 zf-Di19: Drought indu 76.5 1.3 2.9E-05 35.2 1.2 23 250-279 1-23 (54)
24 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.3 68 0.0015 30.0 13.0 105 484-600 4-109 (132)
25 PF13851 GAS: Growth-arrest sp 75.9 45 0.00098 33.6 12.1 51 473-523 83-133 (201)
26 KOG3130 Uncharacterized conser 75.6 1.9 4.1E-05 47.9 2.5 12 83-94 168-179 (514)
27 KOG0943 Predicted ubiquitin-pr 75.5 2 4.4E-05 53.0 2.8 26 389-414 2004-2029(3015)
28 PF15070 GOLGA2L5: Putative go 74.6 1.1E+02 0.0024 36.1 16.3 120 473-608 12-147 (617)
29 PF12128 DUF3584: Protein of u 74.0 86 0.0019 39.4 16.2 60 547-606 679-738 (1201)
30 PF10168 Nup88: Nuclear pore c 73.5 1.3E+02 0.0027 36.2 16.7 60 475-534 564-623 (717)
31 TIGR02168 SMC_prok_B chromosom 73.3 1.5E+02 0.0033 35.6 17.5 29 385-414 141-171 (1179)
32 PRK12704 phosphodiesterase; Pr 72.7 1.5E+02 0.0033 34.1 16.6 121 489-618 81-210 (520)
33 PF05483 SCP-1: Synaptonemal c 72.2 79 0.0017 37.9 14.2 26 475-500 593-618 (786)
34 KOG0579 Ste20-like serine/thre 72.2 88 0.0019 37.8 14.5 145 453-613 792-951 (1187)
35 KOG1265 Phospholipase C [Lipid 71.6 1.5E+02 0.0033 36.7 16.5 55 549-603 1117-1174(1189)
36 KOG4460 Nuclear pore complex, 70.2 1.6E+02 0.0034 34.8 15.7 39 460-504 578-616 (741)
37 smart00362 RRM_2 RNA recogniti 69.6 13 0.00029 27.8 5.3 47 334-389 2-49 (72)
38 PF15397 DUF4618: Domain of un 69.5 1.6E+02 0.0034 31.4 14.6 138 452-608 67-211 (258)
39 KOG0161 Myosin class II heavy 69.4 98 0.0021 41.1 15.4 124 475-598 1061-1198(1930)
40 PHA03346 US22 family homolog; 69.3 8.1 0.00018 44.3 5.6 20 196-215 440-459 (520)
41 KOG0933 Structural maintenance 68.9 67 0.0014 39.9 13.0 119 477-595 295-432 (1174)
42 PRK00106 hypothetical protein; 68.1 2.2E+02 0.0048 33.2 16.6 119 491-618 98-225 (535)
43 PF07888 CALCOCO1: Calcium bin 67.2 1.4E+02 0.0031 34.9 14.8 58 535-592 406-466 (546)
44 KOG0964 Structural maintenance 66.9 1.5E+02 0.0032 37.1 15.3 47 475-521 327-373 (1200)
45 TIGR03185 DNA_S_dndD DNA sulfu 65.4 1.2E+02 0.0025 35.5 14.0 17 593-609 506-522 (650)
46 PF07111 HCR: Alpha helical co 65.1 42 0.0009 40.1 10.2 111 454-564 139-288 (739)
47 PF05739 SNARE: SNARE domain; 65.0 70 0.0015 25.5 9.0 49 473-521 15-63 (63)
48 KOG0994 Extracellular matrix g 65.0 1.9E+02 0.0041 37.0 15.7 16 554-569 1673-1688(1758)
49 KOG1832 HIV-1 Vpr-binding prot 64.4 3.6 7.7E-05 49.8 1.7 10 98-107 1271-1280(1516)
50 PF15066 CAGE1: Cancer-associa 63.7 1.3E+02 0.0028 34.7 13.2 61 460-520 371-434 (527)
51 PF03115 Astro_capsid: Astrovi 63.3 2.4 5.1E-05 50.6 0.0 23 253-279 734-756 (787)
52 KOG0579 Ste20-like serine/thre 62.8 3.6E+02 0.0077 33.0 16.8 53 535-594 1058-1110(1187)
53 KOG0971 Microtubule-associated 62.7 3.1E+02 0.0066 34.4 16.6 26 531-556 402-427 (1243)
54 PF10168 Nup88: Nuclear pore c 62.3 81 0.0018 37.8 12.1 71 543-615 562-632 (717)
55 PF03670 UPF0184: Uncharacteri 62.1 41 0.00089 30.2 7.4 47 478-524 28-74 (83)
56 KOG1103 Predicted coiled-coil 60.9 2.4E+02 0.0053 31.7 14.4 43 561-603 246-290 (561)
57 COG4942 Membrane-bound metallo 60.9 1.9E+02 0.0042 32.8 14.0 67 473-539 168-234 (420)
58 KOG4593 Mitotic checkpoint pro 60.7 2.7E+02 0.0058 33.6 15.5 44 548-593 239-285 (716)
59 PF12072 DUF3552: Domain of un 60.5 1.9E+02 0.0041 29.0 16.3 124 481-613 69-201 (201)
60 PF10186 Atg14: UV radiation r 60.4 1.5E+02 0.0034 30.0 12.4 21 479-499 23-43 (302)
61 PF13894 zf-C2H2_4: C2H2-type 59.9 5.2 0.00011 25.4 1.2 20 252-277 1-20 (24)
62 PF04931 DNA_pol_phi: DNA poly 59.2 6.1 0.00013 46.9 2.4 6 54-59 512-517 (784)
63 KOG0943 Predicted ubiquitin-pr 59.0 5.5 0.00012 49.6 2.0 14 55-68 1627-1640(3015)
64 PF07888 CALCOCO1: Calcium bin 57.9 3.7E+02 0.0081 31.6 17.8 28 489-516 184-211 (546)
65 TIGR01661 ELAV_HUD_SF ELAV/HuD 57.7 20 0.00044 37.2 5.7 51 333-392 271-324 (352)
66 KOG0161 Myosin class II heavy 57.6 4E+02 0.0086 35.9 17.6 60 489-548 900-959 (1930)
67 TIGR00606 rad50 rad50. This fa 57.5 5.1E+02 0.011 33.1 18.5 7 253-259 679-685 (1311)
68 PF04931 DNA_pol_phi: DNA poly 57.4 6.6 0.00014 46.6 2.3 9 288-296 738-746 (784)
69 PF13747 DUF4164: Domain of un 56.3 47 0.001 29.7 6.9 47 473-519 43-89 (89)
70 PF04147 Nop14: Nop14-like fam 56.3 7.1 0.00015 47.0 2.3 19 566-584 779-798 (840)
71 TIGR00606 rad50 rad50. This fa 56.0 4.1E+02 0.0089 33.9 17.3 33 481-513 749-781 (1311)
72 KOG0994 Extracellular matrix g 55.9 99 0.0021 39.2 11.4 41 475-515 1611-1651(1758)
73 TIGR02169 SMC_prok_A chromosom 55.8 4.2E+02 0.009 32.2 16.8 8 354-361 119-126 (1164)
74 PF12329 TMF_DNA_bd: TATA elem 55.2 1E+02 0.0023 26.5 8.6 48 474-521 24-71 (74)
75 PF03153 TFIIA: Transcription 55.1 3.9 8.5E-05 43.9 -0.0 13 243-256 340-352 (375)
76 PHA02562 46 endonuclease subun 55.0 3.5E+02 0.0076 30.4 15.3 9 272-280 154-162 (562)
77 KOG0288 WD40 repeat protein Ti 54.5 1.8E+02 0.004 33.1 12.4 61 471-531 8-71 (459)
78 COG1579 Zn-ribbon protein, pos 54.1 2.9E+02 0.0063 29.2 15.6 22 586-607 160-181 (239)
79 PF11221 Med21: Subunit 21 of 53.6 97 0.0021 29.6 9.0 54 474-527 81-141 (144)
80 PRK02224 chromosome segregatio 52.9 4.8E+02 0.01 31.3 17.6 33 541-573 648-680 (880)
81 PF15290 Syntaphilin: Golgi-lo 52.6 1E+02 0.0022 33.4 9.7 62 473-534 65-129 (305)
82 KOG0250 DNA repair protein RAD 52.4 5.2E+02 0.011 32.8 16.6 51 477-527 669-724 (1074)
83 PF12037 DUF3523: Domain of un 51.3 3.4E+02 0.0073 29.3 13.3 40 560-599 136-175 (276)
84 PF12004 DUF3498: Domain of un 50.7 5.1 0.00011 45.6 0.0 89 490-584 383-478 (495)
85 PF15254 CCDC14: Coiled-coil d 50.7 1.1E+02 0.0024 37.2 10.5 62 504-565 387-474 (861)
86 TIGR00165 S18 ribosomal protei 50.7 24 0.00052 30.5 4.0 43 253-296 7-57 (70)
87 PRK04778 septation ring format 50.4 4.6E+02 0.0099 30.4 18.8 14 285-298 122-135 (569)
88 PF05483 SCP-1: Synaptonemal c 49.4 5.7E+02 0.012 31.2 16.1 62 452-521 90-151 (786)
89 KOG3064 RNA-binding nuclear pr 48.5 9.7 0.00021 40.4 1.6 24 196-219 237-261 (303)
90 PF15358 TSKS: Testis-specific 47.9 94 0.002 35.3 8.9 58 456-516 108-165 (558)
91 KOG0810 SNARE protein Syntaxin 47.8 3.4E+02 0.0075 29.4 12.9 133 473-614 47-183 (297)
92 KOG0612 Rho-associated, coiled 47.7 7.4E+02 0.016 32.0 17.4 12 270-281 332-343 (1317)
93 KOG2398 Predicted proline-seri 47.4 2.9E+02 0.0063 32.8 13.2 17 597-613 186-202 (611)
94 KOG4643 Uncharacterized coiled 47.1 7.2E+02 0.016 31.7 16.9 75 452-530 254-334 (1195)
95 KOG0976 Rho/Rac1-interacting s 47.0 6E+02 0.013 31.7 15.5 27 219-245 34-61 (1265)
96 PRK00409 recombination and DNA 46.9 2.9E+02 0.0063 33.4 13.5 30 207-236 144-173 (782)
97 KOG4673 Transcription factor T 46.8 4.8E+02 0.01 31.9 14.6 88 464-568 344-431 (961)
98 PF10174 Cast: RIM-binding pro 46.7 3.9E+02 0.0084 32.7 14.4 50 476-525 399-457 (775)
99 PRK14160 heat shock protein Gr 46.6 1.3E+02 0.0028 31.1 9.2 57 473-529 51-107 (211)
100 KOG4572 Predicted DNA-binding 46.6 1.8E+02 0.0038 36.0 11.2 81 526-609 897-984 (1424)
101 PF05667 DUF812: Protein of un 46.6 5.6E+02 0.012 30.3 16.6 61 456-516 315-375 (594)
102 KOG1189 Global transcriptional 46.0 21 0.00045 42.9 3.9 11 149-159 865-875 (960)
103 PF05010 TACC: Transforming ac 45.7 3.6E+02 0.0078 27.8 16.8 29 579-607 171-199 (207)
104 KOG0980 Actin-binding protein 45.2 3.6E+02 0.0078 33.5 13.6 42 528-569 507-549 (980)
105 PF09738 DUF2051: Double stran 45.1 1.6E+02 0.0035 31.9 10.0 11 567-577 164-174 (302)
106 PF08317 Spc7: Spc7 kinetochor 45.0 1.9E+02 0.0041 31.1 10.5 62 452-516 188-249 (325)
107 PF07200 Mod_r: Modifier of ru 45.0 2.7E+02 0.0058 26.1 12.4 50 463-512 38-91 (150)
108 KOG2911 Uncharacterized conser 44.8 3.3E+02 0.0072 31.1 12.6 42 471-512 228-269 (439)
109 PRK02224 chromosome segregatio 44.4 6.3E+02 0.014 30.3 15.8 27 561-587 709-735 (880)
110 KOG0996 Structural maintenance 44.4 7.4E+02 0.016 32.0 16.2 43 249-296 107-149 (1293)
111 COG1196 Smc Chromosome segrega 44.1 6.5E+02 0.014 31.8 16.3 13 286-298 530-542 (1163)
112 PF04065 Not3: Not1 N-terminal 43.4 2.1E+02 0.0046 30.0 10.3 85 473-557 119-212 (233)
113 PF13912 zf-C2H2_6: C2H2-type 43.3 11 0.00024 25.5 0.7 22 251-278 1-22 (27)
114 PLN03120 nucleic acid binding 43.3 53 0.0011 34.9 6.0 58 333-401 6-64 (260)
115 KOG0243 Kinesin-like protein [ 43.2 5.4E+02 0.012 32.6 14.9 48 260-308 221-271 (1041)
116 KOG3130 Uncharacterized conser 43.1 22 0.00048 39.9 3.3 15 198-212 286-300 (514)
117 PRK13401 30S ribosomal protein 43.1 35 0.00076 30.5 3.9 45 252-297 14-66 (82)
118 KOG0250 DNA repair protein RAD 43.0 7.4E+02 0.016 31.5 16.0 48 240-297 40-88 (1074)
119 KOG4637 Adaptor for phosphoino 43.0 5.5E+02 0.012 29.2 13.7 56 345-406 43-102 (464)
120 PF00096 zf-C2H2: Zinc finger, 43.0 11 0.00025 24.4 0.7 20 252-277 1-20 (23)
121 PRK10884 SH3 domain-containing 41.5 1.5E+02 0.0034 30.2 8.8 27 490-516 118-144 (206)
122 PF10058 DUF2296: Predicted in 41.2 21 0.00045 29.3 2.1 15 243-258 37-51 (54)
123 PF09789 DUF2353: Uncharacteri 41.2 2.4E+02 0.0053 30.9 10.7 29 544-572 138-166 (319)
124 PRK00391 rpsR 30S ribosomal pr 41.1 40 0.00087 29.8 4.0 45 250-296 13-66 (79)
125 PF03115 Astro_capsid: Astrovi 40.5 9.2 0.0002 45.9 0.0 6 235-240 716-721 (787)
126 PF14812 PBP1_TM: Transmembran 40.2 6.3 0.00014 35.0 -1.1 11 223-233 61-71 (81)
127 PF15233 SYCE1: Synaptonemal c 39.9 3.2E+02 0.0069 26.7 10.0 18 594-611 90-107 (134)
128 PF00170 bZIP_1: bZIP transcri 39.7 1.5E+02 0.0033 24.3 7.0 41 486-526 22-62 (64)
129 PF00261 Tropomyosin: Tropomyo 39.7 4.3E+02 0.0094 27.0 14.0 48 474-521 90-137 (237)
130 KOG0982 Centrosomal protein Nu 39.7 4.4E+02 0.0095 30.4 12.5 15 564-578 340-354 (502)
131 PF11932 DUF3450: Protein of u 39.0 4.5E+02 0.0097 27.0 12.3 17 538-554 123-139 (251)
132 PRK12704 phosphodiesterase; Pr 38.8 6.8E+02 0.015 29.0 15.5 47 485-531 98-144 (520)
133 KOG1994 Predicted RNA binding 38.7 19 0.0004 37.8 1.8 27 249-281 237-263 (268)
134 PRK04863 mukB cell division pr 38.6 9E+02 0.019 31.9 16.5 19 386-406 270-288 (1486)
135 KOG2751 Beclin-like protein [S 38.6 5.7E+02 0.012 29.4 13.1 41 459-502 136-176 (447)
136 KOG0979 Structural maintenance 38.6 5E+02 0.011 32.8 13.6 31 477-507 270-300 (1072)
137 KOG0996 Structural maintenance 38.5 3.4E+02 0.0074 34.7 12.3 34 485-518 930-963 (1293)
138 COG5406 Nucleosome binding fac 38.3 28 0.0006 41.3 3.3 9 148-156 916-924 (1001)
139 smart00017 OSTEO Osteopontin. 38.0 19 0.0004 38.0 1.7 36 249-290 120-155 (287)
140 PLN03121 nucleic acid binding 37.7 63 0.0014 34.1 5.5 58 332-399 6-63 (243)
141 TIGR01661 ELAV_HUD_SF ELAV/HuD 37.6 64 0.0014 33.5 5.6 47 334-389 6-55 (352)
142 PF05764 YL1: YL1 nuclear prot 37.3 26 0.00055 36.2 2.6 7 213-219 72-78 (240)
143 PF10498 IFT57: Intra-flagella 37.1 3E+02 0.0065 30.5 10.8 59 475-537 265-323 (359)
144 KOG0239 Kinesin (KAR3 subfamil 37.1 6.7E+02 0.015 30.2 14.2 41 481-521 180-220 (670)
145 PF10473 CENP-F_leu_zip: Leuci 36.8 2E+02 0.0043 28.0 8.3 36 485-520 54-89 (140)
146 PF03469 XH: XH domain; Inter 36.7 28 0.00061 33.5 2.6 52 560-611 1-76 (132)
147 PF08702 Fib_alpha: Fibrinogen 36.2 2.4E+02 0.0052 27.3 8.8 38 473-510 54-91 (146)
148 KOG1937 Uncharacterized conser 36.0 7.6E+02 0.016 28.8 14.5 37 541-577 384-420 (521)
149 smart00360 RRM RNA recognition 35.9 65 0.0014 23.8 4.0 37 352-388 8-47 (71)
150 TIGR01069 mutS2 MutS2 family p 35.3 5.5E+02 0.012 31.2 13.3 11 382-392 404-414 (771)
151 KOG2036 Predicted P-loop ATPas 34.3 3.1E+02 0.0067 33.6 10.7 44 458-504 866-909 (1011)
152 KOG2057 Predicted equilibrativ 34.2 1.8E+02 0.0039 32.4 8.3 117 492-612 53-214 (499)
153 KOG0804 Cytoplasmic Zn-finger 34.0 4.6E+02 0.0099 30.4 11.6 12 249-260 173-184 (493)
154 KOG4809 Rab6 GTPase-interactin 33.9 3E+02 0.0066 32.5 10.3 31 469-499 470-501 (654)
155 TIGR03319 YmdA_YtgF conserved 33.8 8E+02 0.017 28.4 15.4 40 486-525 93-132 (514)
156 PF14662 CCDC155: Coiled-coil 33.8 5.5E+02 0.012 26.5 12.6 65 541-605 118-191 (193)
157 PF07106 TBPIP: Tat binding pr 33.8 1.2E+02 0.0025 29.3 6.3 127 448-586 27-164 (169)
158 COG0238 RpsR Ribosomal protein 33.4 36 0.00077 30.1 2.4 28 250-279 14-41 (75)
159 PF00261 Tropomyosin: Tropomyo 33.2 5.5E+02 0.012 26.3 12.3 44 478-521 3-46 (237)
160 PF06103 DUF948: Bacterial pro 33.2 3.2E+02 0.007 23.6 8.4 38 488-525 24-61 (90)
161 PF08614 ATG16: Autophagy prot 33.2 4.9E+02 0.011 25.8 10.7 51 479-529 91-141 (194)
162 COG2433 Uncharacterized conser 33.0 6.9E+02 0.015 30.0 13.1 30 544-573 479-508 (652)
163 PF03670 UPF0184: Uncharacteri 33.0 1.7E+02 0.0036 26.4 6.6 44 490-533 26-69 (83)
164 PHA03249 DNA packaging tegumen 32.5 7.4E+02 0.016 29.7 13.2 31 29-59 35-67 (653)
165 PRK11546 zraP zinc resistance 32.0 2.8E+02 0.0061 27.2 8.5 60 474-533 59-118 (143)
166 PF10046 BLOC1_2: Biogenesis o 32.0 3.8E+02 0.0082 24.1 9.2 42 476-517 7-48 (99)
167 PRK13400 30S ribosomal protein 31.9 59 0.0013 31.9 3.9 28 250-278 21-48 (147)
168 KOG4677 Golgi integral membran 31.9 8.8E+02 0.019 28.3 13.5 144 456-609 166-332 (554)
169 KOG1824 TATA-binding protein-i 31.7 26 0.00056 43.2 1.7 30 536-565 683-712 (1233)
170 KOG2817 Predicted E3 ubiquitin 31.7 21 0.00045 39.8 0.9 10 251-260 374-383 (394)
171 PRK14161 heat shock protein Gr 31.6 2.4E+02 0.0052 28.3 8.2 54 477-530 13-66 (178)
172 PF15186 TEX13: Testis-express 31.5 2.8E+02 0.006 27.6 8.3 48 473-520 100-147 (152)
173 PF08317 Spc7: Spc7 kinetochor 31.4 6.9E+02 0.015 26.9 17.4 9 522-530 184-192 (325)
174 PHA02047 phage lambda Rz1-like 31.3 3.1E+02 0.0068 25.5 8.1 47 463-512 31-77 (101)
175 KOG4572 Predicted DNA-binding 31.2 6.9E+02 0.015 31.3 12.9 42 489-530 994-1035(1424)
176 smart00806 AIP3 Actin interact 31.1 3.5E+02 0.0075 30.9 10.1 141 463-615 240-412 (426)
177 smart00787 Spc7 Spc7 kinetocho 31.1 7.2E+02 0.016 27.0 15.1 13 475-487 139-151 (312)
178 KOG0976 Rho/Rac1-interacting s 30.9 1.2E+03 0.025 29.4 14.6 74 502-575 202-285 (1265)
179 KOG0977 Nuclear envelope prote 30.8 9.6E+02 0.021 28.4 14.7 43 478-520 122-164 (546)
180 cd07602 BAR_RhoGAP_OPHN1-like 30.7 6.2E+02 0.013 26.1 15.1 115 491-609 3-130 (207)
181 PLN03229 acetyl-coenzyme A car 30.7 7.4E+02 0.016 30.4 13.1 36 521-556 510-545 (762)
182 PF10234 Cluap1: Clusterin-ass 30.5 7.1E+02 0.015 26.8 12.5 43 452-497 114-156 (267)
183 PLN03134 glycine-rich RNA-bind 30.4 1.1E+02 0.0024 29.0 5.5 56 333-398 36-94 (144)
184 PF09325 Vps5: Vps5 C terminal 30.4 5.4E+02 0.012 25.4 13.2 41 478-518 137-177 (236)
185 KOG2894 Uncharacterized conser 30.1 3.3E+02 0.0072 29.7 9.2 27 526-552 54-80 (331)
186 cd07606 BAR_SFC_plant The Bin/ 30.0 4.8E+02 0.01 26.6 10.2 113 490-605 1-148 (202)
187 PRK14148 heat shock protein Gr 29.9 2.3E+02 0.005 28.9 7.9 49 482-530 39-87 (195)
188 KOG4005 Transcription factor X 29.7 1.8E+02 0.0039 31.0 7.2 49 481-529 75-129 (292)
189 KOG3612 PHD Zn-finger protein 29.4 1.8E+02 0.0039 34.2 7.7 33 557-589 498-530 (588)
190 cd07626 BAR_SNX9_like The Bin/ 28.9 6.4E+02 0.014 25.7 14.4 61 539-609 139-199 (199)
191 KOG4364 Chromatin assembly fac 28.6 1.2E+03 0.025 28.6 14.7 18 596-613 369-386 (811)
192 KOG0804 Cytoplasmic Zn-finger 28.3 9.9E+02 0.021 27.8 12.9 37 484-520 348-384 (493)
193 PF07889 DUF1664: Protein of u 28.2 5E+02 0.011 24.9 9.3 8 428-435 17-24 (126)
194 KOG0018 Structural maintenance 28.1 1.4E+03 0.03 29.4 15.7 138 458-600 704-860 (1141)
195 PHA02562 46 endonuclease subun 28.1 9E+02 0.019 27.2 18.3 23 478-500 190-212 (562)
196 PF12171 zf-C2H2_jaz: Zinc-fin 28.1 28 0.00062 23.9 0.8 23 251-279 1-23 (27)
197 PF12325 TMF_TATA_bd: TATA ele 27.9 5.3E+02 0.011 24.4 10.9 38 481-518 28-65 (120)
198 KOG4398 Predicted coiled-coil 27.9 5.1E+02 0.011 28.4 10.2 62 504-590 26-87 (359)
199 PF08946 Osmo_CC: Osmosensory 27.7 76 0.0016 25.7 3.2 20 559-578 25-44 (46)
200 PRK00409 recombination and DNA 27.7 1.2E+03 0.026 28.5 15.5 7 398-404 431-437 (782)
201 KOG0247 Kinesin-like protein [ 27.6 4.5E+02 0.0098 32.1 10.7 32 456-490 480-511 (809)
202 PF03962 Mnd1: Mnd1 family; I 27.0 5.9E+02 0.013 25.6 10.1 35 476-510 62-96 (188)
203 PF03962 Mnd1: Mnd1 family; I 26.8 6.6E+02 0.014 25.2 10.8 24 561-584 118-141 (188)
204 TIGR01649 hnRNP-L_PTB hnRNP-L/ 26.8 1.4E+02 0.0031 33.4 6.4 69 328-406 389-462 (481)
205 PF08581 Tup_N: Tup N-terminal 26.7 4.5E+02 0.0098 23.3 9.5 47 475-521 3-49 (79)
206 PF06156 DUF972: Protein of un 26.7 3.1E+02 0.0068 25.4 7.5 28 490-517 15-42 (107)
207 PRK00398 rpoP DNA-directed RNA 26.7 52 0.0011 25.5 2.1 10 250-259 20-29 (46)
208 COG0497 RecN ATPase involved i 26.6 1.1E+03 0.023 28.0 13.3 75 533-608 315-391 (557)
209 KOG0612 Rho-associated, coiled 26.4 1E+03 0.022 30.9 13.6 6 250-255 298-303 (1317)
210 KOG0130 RNA-binding protein RB 26.3 77 0.0017 31.3 3.6 57 329-398 70-129 (170)
211 PF10234 Cluap1: Clusterin-ass 25.9 4.8E+02 0.01 28.0 9.7 76 427-509 133-209 (267)
212 PF13094 CENP-Q: CENP-Q, a CEN 25.8 4.6E+02 0.0099 25.1 8.8 50 481-530 32-81 (160)
213 PF00038 Filament: Intermediat 25.8 4.8E+02 0.01 27.1 9.7 88 464-554 214-302 (312)
214 KOG2189 Vacuolar H+-ATPase V0 25.5 2.8E+02 0.0062 33.9 8.6 74 452-525 39-127 (829)
215 KOG4360 Uncharacterized coiled 25.3 1.2E+03 0.026 27.7 15.2 43 476-518 198-240 (596)
216 KOG0978 E3 ubiquitin ligase in 25.2 5.2E+02 0.011 31.3 10.7 38 473-510 563-600 (698)
217 KOG1850 Myosin-like coiled-coi 25.1 1E+03 0.022 26.8 17.0 32 579-610 201-232 (391)
218 PF10211 Ax_dynein_light: Axon 25.1 7.1E+02 0.015 25.0 16.6 39 460-498 64-106 (189)
219 KOG2264 Exostosin EXT1L [Signa 25.1 4.8E+02 0.01 31.3 10.0 23 429-451 46-68 (907)
220 KOG1510 RNA polymerase II holo 25.0 3.9E+02 0.0085 26.2 8.0 55 473-527 71-128 (139)
221 COG0724 RNA-binding proteins ( 25.0 1.5E+02 0.0034 27.6 5.4 56 331-395 115-173 (306)
222 KOG0933 Structural maintenance 24.7 1.6E+03 0.034 28.9 18.8 25 372-399 596-620 (1174)
223 CHL00077 rps18 ribosomal prote 24.6 1E+02 0.0022 27.9 3.8 41 253-297 19-68 (86)
224 KOG0972 Huntingtin interacting 24.5 4.8E+02 0.01 28.8 9.3 78 475-556 272-349 (384)
225 TIGR01541 tape_meas_lam_C phag 24.4 9.6E+02 0.021 26.3 13.9 124 478-605 12-145 (332)
226 KOG0979 Structural maintenance 24.3 1.6E+03 0.034 28.7 16.1 49 456-507 619-667 (1072)
227 KOG4302 Microtubule-associated 24.1 8.1E+02 0.018 29.6 11.9 94 505-599 291-394 (660)
228 PF00521 DNA_topoisoIV: DNA gy 23.9 1E+03 0.023 26.5 13.1 61 213-281 84-144 (426)
229 KOG0249 LAR-interacting protei 23.8 8.8E+02 0.019 29.9 12.0 85 434-520 62-148 (916)
230 PF09726 Macoilin: Transmembra 23.6 8.4E+02 0.018 29.5 12.1 24 476-499 552-575 (697)
231 PHA00616 hypothetical protein 23.5 24 0.00053 28.1 -0.2 22 251-278 1-22 (44)
232 KOG0717 Molecular chaperone (D 23.4 75 0.0016 36.5 3.4 40 252-299 293-332 (508)
233 PF10498 IFT57: Intra-flagella 23.2 4.6E+02 0.01 29.1 9.3 38 483-520 220-257 (359)
234 COG5109 Uncharacterized conser 23.2 36 0.00078 37.3 0.9 13 249-261 374-386 (396)
235 PF04136 Sec34: Sec34-like fam 23.2 5.2E+02 0.011 25.2 8.7 31 479-509 17-47 (157)
236 KOG1991 Nuclear transport rece 23.2 43 0.00093 41.3 1.5 13 228-240 962-974 (1010)
237 PF03915 AIP3: Actin interacti 23.1 1.1E+03 0.024 27.0 12.2 135 473-616 243-411 (424)
238 KOG3564 GTPase-activating prot 23.0 6.7E+02 0.015 29.5 10.5 89 482-573 9-97 (604)
239 TIGR01628 PABP-1234 polyadenyl 22.7 1.3E+02 0.0028 34.0 5.1 50 333-391 90-141 (562)
240 PF09731 Mitofilin: Mitochondr 22.7 1.2E+03 0.026 26.8 12.8 17 591-607 354-370 (582)
241 COG5533 UBP5 Ubiquitin C-termi 22.6 50 0.0011 36.4 1.8 27 230-263 270-296 (415)
242 PRK13169 DNA replication intia 22.5 4.2E+02 0.0091 24.9 7.5 44 478-521 10-53 (110)
243 PRK14139 heat shock protein Gr 22.5 3.1E+02 0.0067 27.8 7.2 47 484-530 33-79 (185)
244 KOG3003 Molecular chaperone of 22.4 9.1E+02 0.02 25.7 10.7 71 459-534 51-121 (236)
245 KOG3859 Septins (P-loop GTPase 22.4 9.7E+02 0.021 26.7 11.1 102 504-608 272-399 (406)
246 PF13874 Nup54: Nucleoporin co 22.4 6.5E+02 0.014 23.9 9.0 44 477-520 45-88 (141)
247 KOG0980 Actin-binding protein 22.2 1.6E+03 0.036 28.2 15.7 14 228-241 163-176 (980)
248 PRK09630 DNA topoisomerase IV 22.2 1.3E+03 0.028 27.0 13.8 142 456-613 305-456 (479)
249 KOG2129 Uncharacterized conser 22.1 1.3E+03 0.028 26.9 15.4 37 484-520 188-224 (552)
250 PF10211 Ax_dynein_light: Axon 22.1 8.1E+02 0.017 24.6 10.5 33 477-509 121-153 (189)
251 smart00531 TFIIE Transcription 22.1 47 0.001 31.6 1.4 12 249-260 121-132 (147)
252 KOG1991 Nuclear transport rece 22.0 54 0.0012 40.4 2.1 7 270-276 979-985 (1010)
253 KOG2652 RNA polymerase II tran 21.9 43 0.00093 36.8 1.1 8 249-256 318-325 (348)
254 KOG1103 Predicted coiled-coil 21.8 1.2E+03 0.026 26.5 14.4 25 538-562 173-197 (561)
255 PRK04863 mukB cell division pr 21.7 2E+03 0.043 28.9 16.5 12 537-548 433-444 (1486)
256 PF08614 ATG16: Autophagy prot 21.7 8E+02 0.017 24.3 10.0 29 493-521 154-182 (194)
257 PRK14162 heat shock protein Gr 21.5 3.4E+02 0.0073 27.7 7.3 40 491-530 47-86 (194)
258 PF05622 HOOK: HOOK protein; 21.4 31 0.00068 40.6 0.0 21 479-499 263-283 (713)
259 KOG0995 Centromere-associated 21.2 1.4E+03 0.031 27.2 17.7 59 476-534 446-504 (581)
260 KOG3647 Predicted coiled-coil 21.2 1.1E+03 0.024 25.8 12.6 110 499-610 103-224 (338)
261 TIGR03655 anti_R_Lar restricti 21.1 41 0.0009 26.9 0.6 10 253-262 3-12 (53)
262 PF10205 KLRAQ: Predicted coil 21.1 4.9E+02 0.011 24.4 7.5 48 474-521 10-57 (102)
263 TIGR01645 half-pint poly-U bin 21.0 1.6E+02 0.0034 34.9 5.5 62 333-404 206-270 (612)
264 PF05129 Elf1: Transcription e 20.9 39 0.00085 29.7 0.5 11 249-259 20-30 (81)
265 PF13893 RRM_5: RNA recognitio 20.8 1.5E+02 0.0033 22.8 3.7 40 357-403 1-41 (56)
266 COG1340 Uncharacterized archae 20.7 1.1E+03 0.024 25.7 13.2 124 471-595 1-124 (294)
267 KOG0125 Ataxin 2-binding prote 20.7 1.4E+02 0.0031 33.1 4.7 49 335-392 100-149 (376)
268 cd07639 BAR_ACAP1 The Bin/Amph 20.6 7.1E+02 0.015 25.5 9.4 24 493-516 5-28 (200)
269 PF02994 Transposase_22: L1 tr 20.5 2.6E+02 0.0057 30.8 6.8 41 479-519 140-180 (370)
270 PF04050 Upf2: Up-frameshift s 20.3 34 0.00074 33.4 0.0 17 285-301 63-79 (170)
271 cd07605 I-BAR_IMD Inverse (I)- 20.2 9.5E+02 0.021 25.0 10.3 47 475-521 93-143 (223)
272 PF08855 DUF1825: Domain of un 20.2 7.4E+02 0.016 23.4 8.9 37 461-497 7-48 (108)
273 PF04129 Vps52: Vps52 / Sac2 f 20.2 9.2E+02 0.02 27.7 11.2 60 458-525 4-63 (508)
274 PF04156 IncA: IncA protein; 20.1 8E+02 0.017 23.7 14.0 25 475-499 87-111 (191)
275 KOG2391 Vacuolar sorting prote 20.1 9.2E+02 0.02 27.1 10.5 38 485-522 223-260 (365)
276 smart00451 ZnF_U1 U1-like zinc 20.0 70 0.0015 22.6 1.6 24 250-279 2-25 (35)
No 1
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=8.1e-45 Score=328.75 Aligned_cols=115 Identities=39% Similarity=0.763 Sum_probs=86.9
Q ss_pred CCceeecCCeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHH
Q 007021 324 KDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHF 403 (621)
Q Consensus 324 kDdliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhF 403 (621)
+|++|||||||||+||+|+++++|+++|+|+++|+++|+.|+|++|+||||+.||+|++||+|++||+||+||++||+||
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~~F 80 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEKHF 80 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHHHH
Confidence 58999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCc
Q 007021 404 AEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQ 445 (621)
Q Consensus 404 e~qg~GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d~ 445 (621)
+.++|||+||. +++. .+++||||||++|||++.++
T Consensus 81 ~~~~~Gr~dW~--~~~~-----~~~~lYGw~A~~dD~~~~~~ 115 (116)
T PF03468_consen 81 EAQGHGRKDWE--RRRG-----GGSQLYGWVARADDYNSPGP 115 (116)
T ss_dssp HHTT-SHHHHT---SSS--------S-EEEE-BHHHHHSSSH
T ss_pred HHcCCCHHHHh--hccC-----CCCceeeeeCchhhccCCCC
Confidence 99999999998 4443 48999999999999999876
No 2
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.41 E-value=6.3e-14 Score=107.87 Aligned_cols=36 Identities=42% Similarity=0.775 Sum_probs=34.3
Q ss_pred ccCCCCCCCCcccccCchHHhhhccccC-------chhhhhHHHHH
Q 007021 254 CPACQGGPGAIDWYRGLQPLMTHAKTKG-------SKRVKLHRELA 292 (621)
Q Consensus 254 CP~C~gkkkq~D~Y~~l~~LLqHA~gvG-------ak~kalHrALa 292 (621)
||||+++|++ | |+ |++|||||+||| ++++++|||||
T Consensus 1 CP~C~~kkk~-~-Y~-~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQ-D-YK-YRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCc-c-ee-hhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999998 8 99 999999999999 79999999996
No 3
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.79 Score=54.16 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HH-------HHhhcC--CC-----CChhHHHHHHH-----------HHhhhh
Q 007021 504 EKLRETMEENRIVKQRTKMQHEQNK---EE-------VKQSIA--NP-----KNTEDYKLRAE-----------EIAKFI 555 (621)
Q Consensus 504 ~sL~r~mEE~d~L~~r~k~~h~~~~---ee-------~~q~~~--~~-----s~~e~~r~~~E-----------~i~~f~ 555 (621)
-....+|-|++.|.+|+||+.+.+. .| ++|... .. +.++-.++..| +|++=+
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778899999999998877433 22 333321 11 11222222223 444444
Q ss_pred hhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCccccc
Q 007021 556 TVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVA 617 (621)
Q Consensus 556 ~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~~~~~~~~ 617 (621)
+----||.-|....++|..+|--+..+... -+.-+.++.||.+.-...||.+.+....-++
T Consensus 559 esk~~eidi~n~qlkelk~~~~~q~lake~-~yk~e~d~~ke~et~~lel~~~ke~e~~~as 619 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKEDVNSQQLAKEE-LYKNERDKLKEAETKALELIGEKEAESAPAS 619 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhccchhh
Confidence 444446666777777777777666655443 3344666777777777788877766554443
No 4
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=94.77 E-value=1 Score=45.48 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhh
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFI 555 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~ 555 (621)
-.|.||+.+-..+.+....|...|-.....+ -.+++.|..++..+.......+-|-...-+.+..-=+-++.|...-
T Consensus 4 ~~l~yL~~~~~e~~~~i~~L~~q~~~~~~~i---~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k 80 (206)
T PF14988_consen 4 EFLEYLKKKDEEKEKKIEKLWKQYIQQLEEI---QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLK 80 (206)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567777777777777766666665544333 3455555555544444444433222211111111111234566666
Q ss_pred hhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh-HHHHHHH
Q 007021 556 TVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF-DAELTQL 605 (621)
Q Consensus 556 ~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~-~~~l~~l 605 (621)
+-|+++|..+..+-.+....|..+...|+...-+|-..||+++ +-.+..|
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l 131 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQL 131 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 7788999999999999999999999999999999999999999 6555443
No 5
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=5.7 Score=42.01 Aligned_cols=127 Identities=18% Similarity=0.231 Sum_probs=85.1
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCC------------Ch
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPK------------NT 541 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s------------~~ 541 (621)
-...|..|-++|+..+...++++.+++++...|.+.-.+++.+..+++++-+-.++-++-...+.+ +.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSf 129 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSF 129 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcH
Confidence 356788999999999999999999999999999999999999999999998888777554433333 33
Q ss_pred hHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007021 542 EDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQL 605 (621)
Q Consensus 542 e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~l 605 (621)
-|.=-|+--|+..++.--+=++.+...+..| +.+++++.. --++.+.|..||+.-+..|
T Consensus 130 sD~IsRvtAi~~iv~aDk~ile~qk~dk~~L----e~kq~~l~~-~~e~l~al~~e~e~~~~~L 188 (265)
T COG3883 130 SDLISRVTAISVIVDADKKILEQQKEDKKSL----EEKQAALED-KLETLVALQNELETQLNSL 188 (265)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555556666666655555555555554444 223333322 2344444555555444433
No 6
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=3 Score=47.96 Aligned_cols=64 Identities=20% Similarity=0.422 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhhhhh---hHhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007021 544 YKLRAEEIAKFITVQ---DKEMEEFVAARDRLIKFHGE---KMDAMRRRHWEEEVELEKGFDAELTQLME 607 (621)
Q Consensus 544 ~r~~~E~i~~f~~~q---~kem~~f~~er~kl~~~~~~---~~a~~k~~~~~ee~~leke~~~~l~~lm~ 607 (621)
++.....+.+.|+.| .+|++....||.+|-+.=.. .+.++.++-|+.+++.|.-|++-.+.+.+
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334566666665 46888888999988766554 67889999999999999888876665543
No 7
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.76 E-value=8.8 Score=38.61 Aligned_cols=159 Identities=15% Similarity=0.265 Sum_probs=97.4
Q ss_pred cccccccc-HHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 452 KQKFEMRS-YHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 452 rkkgdLKS-isEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
+.-.+||. |+||..+.+.-|..--..|+-++.+.+...+.+.++...+..+++-|.++.+|...|+..++. ++..+..
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~-y~kdK~~ 87 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN-YEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34445555 478888777734344444445555555556667777777777888888888888888876653 3333333
Q ss_pred HHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh----------HH
Q 007021 531 VKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF----------DA 600 (621)
Q Consensus 531 ~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~----------~~ 600 (621)
++..... ..........+...-++-.....+++.||+.|-...+..+..+..+.=.+-+=||+++ ++
T Consensus 88 L~~~k~r---l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 88 LQNLKAR---LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 1122233445556666666677888899999988777766555554444455555443 56
Q ss_pred HHHHHHHhhcCCcc
Q 007021 601 ELTQLMEKYSTHIT 614 (621)
Q Consensus 601 ~l~~lm~k~~~~~~ 614 (621)
+|..++....+++.
T Consensus 165 qL~evl~~~nldp~ 178 (201)
T PF13851_consen 165 QLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHcCCCHH
Confidence 77777877777765
No 8
>PRK11637 AmiB activator; Provisional
Probab=92.37 E-value=10 Score=41.57 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~ 527 (621)
+....+..|..+|...++.+..++..+..+...|..+.+++..+..++..+....
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555554444433
No 9
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.89 E-value=4.9 Score=47.95 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH----HHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Q 007021 505 KLRETMEENRIVKQRTKMQHEQNKEE----VKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 573 (621)
Q Consensus 505 sL~r~mEE~d~L~~r~k~~h~~~~ee----~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~ 573 (621)
-|.+....++.+++++|.++.+...| ..+.+......+++| .+-....+ +-.+.+.++|++|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk--~~~~~q~l----ake~~yk~e~d~~k 598 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK--EDVNSQQL----AKEELYKNERDKLK 598 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHHHHH----HHHHHHHHHHHHHH
Confidence 46667788888899998888877766 233334344444443 22222222 22344556666664
No 10
>PRK11637 AmiB activator; Provisional
Probab=87.12 E-value=30 Score=38.07 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
+..+|...++.+..++.+++.+...|..+..+...+..
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~ 110 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA 110 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 11
>PRK12705 hypothetical protein; Provisional
Probab=87.12 E-value=28 Score=39.99 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhhhhhhhhHhHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HhhhhhHHHHHHHHHhhcCCcccc
Q 007021 541 TEDYKLRAEEIAKFITVQDKEME--EFVAARDRLIKFHGEKMDAMRRRHWEEEV--ELEKGFDAELTQLMEKYSTHITEV 616 (621)
Q Consensus 541 ~e~~r~~~E~i~~f~~~q~kem~--~f~~er~kl~~~~~~~~a~~k~~~~~ee~--~leke~~~~l~~lm~k~~~~~~~~ 616 (621)
.++...++|+|+.++.-+.|++= +++ +++. .-++...+..+++. +-+++...=|+..|+.|..+.+.+
T Consensus 125 ~~~~~~~Le~ia~lt~~eak~~l~~~~~---~~~~-----~e~~~~i~~~e~~~~~~a~~~A~~ii~~aiqr~a~~~~~e 196 (508)
T PRK12705 125 EKQLDNELYRVAGLTPEQARKLLLKLLD---AELE-----EEKAQRVKKIEEEADLEAERKAQNILAQAMQRIASETASD 196 (508)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 55566677888888877776432 111 1111 11222233334433 456777788999999999988765
Q ss_pred cc
Q 007021 617 AA 618 (621)
Q Consensus 617 ~~ 618 (621)
..
T Consensus 197 ~t 198 (508)
T PRK12705 197 LS 198 (508)
T ss_pred he
Confidence 43
No 12
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.91 E-value=17 Score=43.07 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=52.1
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
|++.||.+--.+++|-..|++.-..---.|+..|...++.-++||.++..+....+.-++-...|.+|++++..
T Consensus 429 kLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 429 KLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777666644422222235667788888888889999999888888888888888888766555
No 13
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.49 E-value=39 Score=39.52 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh-cCCCCChhHHHHHHHHHh
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS-IANPKNTEDYKLRAEEIA 552 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~-~~~~s~~e~~r~~~E~i~ 552 (621)
..+.+..|..+|..-...+.+|+..+.....++..+.++.......+.+.-.+.+ -.++. ..-+...+. ++++.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~-l~~k~~~lL~d~e~n----i~kL~ 400 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK-LKKKTVELLPDAEEN----IAKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHH----HHHHH
Confidence 3455566666666666666666666666666666666555544443332221111 11111 111211122 26677
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHH
Q 007021 553 KFITVQDKEMEEFVAARDRLIKFHGEKMDAMR 584 (621)
Q Consensus 553 ~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k 584 (621)
.+++-....|.+|..+=++++.-..+++..++
T Consensus 401 ~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 401 ALVEASEQRLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777777777764444444444444444
No 14
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.03 E-value=18 Score=44.06 Aligned_cols=30 Identities=20% Similarity=0.077 Sum_probs=22.6
Q ss_pred HHHHHHhcccCceeecCCCCeeEccCCCCC
Q 007021 231 KKFFESLESLTVEEINEPARQWHCPACQGG 260 (621)
Q Consensus 231 ~K~ye~Lksg~~kvkn~~~~tf~CP~C~gk 260 (621)
.+-|..|+.-+++..|...++..=.|=.|.
T Consensus 600 ~~~~~~Lk~~~iefV~yNK~QlSRIYPKgt 629 (1189)
T KOG1265|consen 600 STGLGYLKKSPIEFVNYNKRQLSRIYPKGT 629 (1189)
T ss_pred HHHHHHHHhCchHHhhhhhHhhhccccCcc
Confidence 466778888888877777788877776654
No 15
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.07 E-value=47 Score=38.23 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=39.6
Q ss_pred hhhHhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q 007021 557 VQDKEMEEFVAARDRLIKFHGE---KMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 557 ~q~kem~~f~~er~kl~~~~~~---~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~ 610 (621)
|-..+.++.++||++|-+.-+- ++..|.+.--.-+++.+.-|+ +|.+++.+|+
T Consensus 365 Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~-slek~~~~~~ 420 (622)
T COG5185 365 ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFK-SLEKTLRQYD 420 (622)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence 3345777778999999776554 677888888888888887775 5777777775
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=81.77 E-value=5.5 Score=31.69 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=41.9
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCccchHHHHHHHH
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAGGYLEAERLHK 401 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~rLek 401 (621)
+.|-|+|. ..+...|.+.|..|+++ +++...+++|. +|+|+|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~---------~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPP---------STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTT---------T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCC---------CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 35677764 23578899999998765 67888887765 899999996 5666666666653
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=80.22 E-value=15 Score=44.17 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHH
Q 007021 540 NTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMD 581 (621)
Q Consensus 540 ~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a 581 (621)
+.||.|+|.|+-.+-.+.+-.-..+.++|+++-.++|+...+
T Consensus 941 Eaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~ 982 (1259)
T KOG0163|consen 941 EAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLA 982 (1259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345556555554444444444445555666655555544333
No 18
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=79.54 E-value=1 Score=50.38 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=3.2
Q ss_pred ccHHHHHH
Q 007021 458 RSYHEMVV 465 (621)
Q Consensus 458 KSisEmv~ 465 (621)
|..=|||+
T Consensus 386 RgaIDIVk 393 (458)
T PF10446_consen 386 RGAIDIVK 393 (458)
T ss_pred ccccccee
Confidence 33334443
No 19
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=79.15 E-value=1.1 Score=50.17 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=7.2
Q ss_pred cccccHHHHHHHHhh
Q 007021 455 FEMRSYHEMVVNQIR 469 (621)
Q Consensus 455 gdLKSisEmv~E~~R 469 (621)
|-|==|..|++...|
T Consensus 387 gaIDIVkGLEkKRQr 401 (458)
T PF10446_consen 387 GAIDIVKGLEKKRQR 401 (458)
T ss_pred ccccceechhhhhhh
Confidence 444445555554444
No 20
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=78.64 E-value=66 Score=36.92 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhhcCC-CCChhHHHHHHHHHhhhhhhhhHhHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE---QNKEEVKQSIAN-PKNTEDYKLRAEEIAKFITVQDKEMEE 564 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~---~~~ee~~q~~~~-~s~~e~~r~~~E~i~~f~~~q~kem~~ 564 (621)
.+.++..|..+.+....|.+.+++.+...+....+.. +-.+++.+.... ..-.++...++|+|+..+.-+.|
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak---- 150 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAK---- 150 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH----
Confidence 5556666666666666666555544443333221111 111111111100 01112233344555555554444
Q ss_pred HHHHHHHHHHhhhh---hHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhcCCcccccc
Q 007021 565 FVAARDRLIKFHGE---KMDAMRRRHWEEEVEL--EKGFDAELTQLMEKYSTHITEVAA 618 (621)
Q Consensus 565 f~~er~kl~~~~~~---~~a~~k~~~~~ee~~l--eke~~~~l~~lm~k~~~~~~~~~~ 618 (621)
+.|++.-++ .-++...+..+++.+. +++...=|+.-|+.|..+.+.+..
T Consensus 151 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~~~~e~~ 204 (514)
T TIGR03319 151 -----EILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGDHVAETT 204 (514)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhe
Confidence 334333333 2344445556665554 344555699999999988876543
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.51 E-value=64 Score=40.49 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 007021 565 FVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 603 (621)
Q Consensus 565 f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~ 603 (621)
++++.+..|......+++.+..+=++-=+|++.++.+|.
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~ 764 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA 764 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555666655553
No 22
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=77.81 E-value=6.2 Score=30.64 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=38.9
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCccchHHHHH
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
+.|-|+|. ..+..+|++.|+.|+++ .+....+..| +.|+++|.|.+ ...-..|+.
T Consensus 1 l~v~nlp~---------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPP---------DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETT---------TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCC---------cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 35667754 24678999999999998 4555554444 59999999987 555555554
No 23
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.49 E-value=1.3 Score=35.21 Aligned_cols=23 Identities=26% Similarity=0.762 Sum_probs=16.5
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhccc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g 279 (621)
.+|.||||+. . | +...|+.|-..
T Consensus 1 ~~f~CP~C~~--~----~-~~~~L~~H~~~ 23 (54)
T PF05605_consen 1 DSFTCPYCGK--G----F-SESSLVEHCED 23 (54)
T ss_pred CCcCCCCCCC--c----c-CHHHHHHHHHh
Confidence 3799999963 1 3 37799999554
No 24
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=76.27 E-value=68 Score=30.01 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHH
Q 007021 484 RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEME 563 (621)
Q Consensus 484 qIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~ 563 (621)
++..-...++.+..........+..+.++...+...+++.+..+..|+..+....-.+...|.....+. .++.
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~-------~~~~ 76 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ-------QEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 344444555566666666777888888999999999999999999997777655444444443322222 3455
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHhhhhhHH
Q 007021 564 EFVAARDRLIKFHGEKMDAMRRRHWEEE-VELEKGFDA 600 (621)
Q Consensus 564 ~f~~er~kl~~~~~~~~a~~k~~~~~ee-~~leke~~~ 600 (621)
+|.++.+.....-... ...|+++ -.|++++.+
T Consensus 77 ~l~~~~~~a~~~l~~~-----e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 77 ELKAEAESAKAELEES-----EASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHH
Confidence 5556655554443332 2346554 344444443
No 25
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=75.87 E-value=45 Score=33.62 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQ 523 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~ 523 (621)
++-..+.+++.++....+.+..|+..+....+++.++..|++.|..|....
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888889999999999999999999999999999998888776433
No 26
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.59 E-value=1.9 Score=47.86 Aligned_cols=12 Identities=17% Similarity=-0.205 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCC
Q 007021 83 WGHLDSTQKPGM 94 (621)
Q Consensus 83 wg~~~~~~~~~~ 94 (621)
=-..++.++.+|
T Consensus 168 ~~~~d~~~~dvl 179 (514)
T KOG3130|consen 168 DIANDVKSKDVL 179 (514)
T ss_pred Hhhcchhhhhcc
Confidence 334455555554
No 27
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=2 Score=53.03 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=13.8
Q ss_pred CccchHHHHHHHHHHhhcCCChhhhh
Q 007021 389 SAGGYLEAERLHKHFAEQGTDRDSWN 414 (621)
Q Consensus 389 dwsGf~nA~rLekhFe~qg~GRkdW~ 414 (621)
-.+-+.+|..|+++-+..-.--.-|.
T Consensus 2004 K~ndnqDapnLenarEe~ai~fs~lm 2029 (3015)
T KOG0943|consen 2004 KLNDNQDAPNLENAREEKAIPFSNLM 2029 (3015)
T ss_pred hccccccCccHHHHHHhhcccHHHHH
Confidence 33445566666666555544444454
No 28
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=74.62 E-value=1.1e+02 Score=36.13 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=59.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---H-----HhhcCCCCChh--
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE---V-----KQSIANPKNTE-- 542 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee---~-----~q~~~~~s~~e-- 542 (621)
+.++.+..|+..... +..++.+++..+..+.+|++....|+.+.-.++.+- + ....+.+|..|
T Consensus 12 Erd~ya~~lk~e~a~-------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~ 84 (617)
T PF15070_consen 12 ERDQYAQQLKEESAQ-------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQ 84 (617)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHH
Confidence 455566666655443 455555666777777777777776665444433332 1 11123344443
Q ss_pred ------HHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 007021 543 ------DYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEK 608 (621)
Q Consensus 543 ------~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k 608 (621)
.++.++|.+..=+..|.++.+.| ..|....+++.+.+ ++.|+..++...+..+|++.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~L----s~L~~EqEerL~EL-----E~~le~~~e~~~D~~kLLe~ 147 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQL----SRLNQEQEERLAEL-----EEELERLQEQQEDRQKLLEQ 147 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhh
Confidence 23333444444444555555544 22333333333332 34444444444556666654
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=73.99 E-value=86 Score=39.37 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=34.5
Q ss_pred HHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007021 547 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLM 606 (621)
Q Consensus 547 ~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm 606 (621)
|.+.+..=+.-...+...|..+++++...+...+..+...+=..--+++.++++.+..+-
T Consensus 679 ~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~ 738 (1201)
T PF12128_consen 679 RKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIK 738 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555667777777777777777776666653333333334555555554443
No 30
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.53 E-value=1.3e+02 Score=36.19 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS 534 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~ 534 (621)
.+.+.-|+.+++.+.+.+++|++....++.+-.++-|..+.+..|.+....++..-++..
T Consensus 564 ~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666655555555544444444444444444333433
No 31
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=73.30 E-value=1.5e+02 Score=35.59 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=13.2
Q ss_pred EeCCCccchH--HHHHHHHHHhhcCCChhhhh
Q 007021 385 IFESSAGGYL--EAERLHKHFAEQGTDRDSWN 414 (621)
Q Consensus 385 ~F~kdwsGf~--nA~rLekhFe~qg~GRkdW~ 414 (621)
.+......|. ....+-+.|+ ...|-..|.
T Consensus 141 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 171 (1179)
T TIGR02168 141 IEQGKISEIIEAKPEERRAIFE-EAAGISKYK 171 (1179)
T ss_pred eecccHHHHHcCCHHHHHHHHH-HHccHHHHH
Confidence 3555555554 3333444444 234455553
No 32
>PRK12704 phosphodiesterase; Provisional
Probab=72.72 E-value=1.5e+02 Score=34.13 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhhcCC-CCChhHHHHHHHHHhhhhhhhhHhHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE---QNKEEVKQSIAN-PKNTEDYKLRAEEIAKFITVQDKEMEE 564 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~---~~~ee~~q~~~~-~s~~e~~r~~~E~i~~f~~~q~kem~~ 564 (621)
.+.++..|..+.+....|.+..+..+...+....+.. +-.+++.+.... ..-.++...++|+|+..+.-+.|
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~---- 156 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK---- 156 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH----
Confidence 5556666666655555555555443333333322111 111111111111 01112223344555555544444
Q ss_pred HHHHHHHHHHhhhh---hHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhcCCcccccc
Q 007021 565 FVAARDRLIKFHGE---KMDAMRRRHWEEEVEL--EKGFDAELTQLMEKYSTHITEVAA 618 (621)
Q Consensus 565 f~~er~kl~~~~~~---~~a~~k~~~~~ee~~l--eke~~~~l~~lm~k~~~~~~~~~~ 618 (621)
+.|++.-++ .-++...+..+++.+. +++...=|+.-|+.|..+.+.+..
T Consensus 157 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~~~~~e~~ 210 (520)
T PRK12704 157 -----EILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAADHVAETT 210 (520)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhc
Confidence 334333332 2344445555665544 455566699999999988876543
No 33
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.23 E-value=79 Score=37.88 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHh
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFS 500 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~n 500 (621)
...+.+|..+|+.+++.+.+|+..+.
T Consensus 593 enk~~~LrKqvEnk~K~ieeLqqeNk 618 (786)
T PF05483_consen 593 ENKCNNLRKQVENKNKNIEELQQENK 618 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33455566666666666666555443
No 34
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.20 E-value=88 Score=37.76 Aligned_cols=145 Identities=19% Similarity=0.264 Sum_probs=68.6
Q ss_pred cccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHH
Q 007021 453 QKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM-EENRIVKQRTKMQHEQNKEEV 531 (621)
Q Consensus 453 kkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m-EE~d~L~~r~k~~h~~~~ee~ 531 (621)
.+-+|+-+--+..++.| ...+|-+-+-.+++. +--++.+--+++.|.- -|.+.|-++.|.+.+....+
T Consensus 792 RrQeLreLR~LQkeE~R---~qqqL~~k~~~q~Eq-------~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~- 860 (1187)
T KOG0579|consen 792 RRQELRELRRLQKEEAR---QQQQLQAKGIKQVEQ-------QARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQA- 860 (1187)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH-
Confidence 34456666666666666 333333333333222 2222222223333332 34555555544444322221
Q ss_pred HhhcCCCCChhHHHHHHH---HHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----------Hhhhh
Q 007021 532 KQSIANPKNTEDYKLRAE---EIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEV-----------ELEKG 597 (621)
Q Consensus 532 ~q~~~~~s~~e~~r~~~E---~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~-----------~leke 597 (621)
.+.---.+-.|+|.| .+.+|-+.=--+|.+|..|=.+|-+. ..|.+||.+-=+-+. +++.+
T Consensus 861 ---h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~--qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~ 935 (1187)
T KOG0579|consen 861 ---HEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKV--QRKDALKQRKEQIEIEHQLKEKDFVMKQQQN 935 (1187)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 111111233455555 34444444444666666665555544 356666654322221 34566
Q ss_pred hHHHHHHHHHhhcCCc
Q 007021 598 FDAELTQLMEKYSTHI 613 (621)
Q Consensus 598 ~~~~l~~lm~k~~~~~ 613 (621)
++..|.++.+||+-.+
T Consensus 936 le~~lkrm~~~~k~em 951 (1187)
T KOG0579|consen 936 LEAMLKRMAEKHKEEM 951 (1187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888887544
No 35
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=71.55 E-value=1.5e+02 Score=36.69 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=27.4
Q ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHH---HHHHHhhhhhHHHHH
Q 007021 549 EEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHW---EEEVELEKGFDAELT 603 (621)
Q Consensus 549 E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~---~ee~~leke~~~~l~ 603 (621)
|....-.++--.-+.+||++|.+|..........|.+.|- |-..+.||.|+.|+.
T Consensus 1117 e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~ 1174 (1189)
T KOG1265|consen 1117 ERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAE 1174 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333344444455667777777766555544444444443 223333444554443
No 36
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.23 E-value=1.6e+02 Score=34.77 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 007021 460 YHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSE 504 (621)
Q Consensus 460 isEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~ 504 (621)
+.++|.+++. .-+.+|+-+++.+-+.+++++++...+++
T Consensus 578 ~~dlV~~e~q------rH~~~l~~~k~~QlQ~l~~~~eer~~i~e 616 (741)
T KOG4460|consen 578 KQDLVKEEIQ------RHVKLLCDQKKKQLQDLSYCREERKSLRE 616 (741)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776666 35667777777777777777765544433
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=69.59 E-value=13 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=33.9
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
++|-|++. ..+..+|++.|..|+++. +.....+..+.|+++|.|...
T Consensus 2 v~i~~l~~---------~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPP---------DVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCC---------cCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 56667643 235778999999999874 555555555689999999864
No 38
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.54 E-value=1.6e+02 Score=31.40 Aligned_cols=138 Identities=15% Similarity=0.182 Sum_probs=65.3
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALE----ATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE----~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~ 527 (621)
..+++|.+..+.....+. .-.++|..|..+|.+.++.+.-|= -.|-..++.+..++.+...|.......+.+.
T Consensus 67 ~ak~eLqe~eek~e~~l~---~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel 143 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLS---KLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDEL 143 (258)
T ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555444444 555555555555555555555542 2333344444444444444443332222222
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHhhhhh-hhhHhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHhhhhhHHHHHH
Q 007021 528 KEEVKQSIANPKNTEDYKLRAEEIAKFIT-VQDKEMEEFVAARDRLIKFHGE--KMDAMRRRHWEEEVELEKGFDAELTQ 604 (621)
Q Consensus 528 ~ee~~q~~~~~s~~e~~r~~~E~i~~f~~-~q~kem~~f~~er~kl~~~~~~--~~a~~k~~~~~ee~~leke~~~~l~~ 604 (621)
.+.+ .....+|.. +|.+..+=+.+-=++.++.|+. ...++.-.++..+..+-++|-++|..
T Consensus 144 ~e~~----------------~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e 207 (258)
T PF15397_consen 144 NEMR----------------QMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEE 207 (258)
T ss_pred HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 112222222 2233333333345666777776 33334455677777777777777665
Q ss_pred HHHh
Q 007021 605 LMEK 608 (621)
Q Consensus 605 lm~k 608 (621)
-|.+
T Consensus 208 ~I~~ 211 (258)
T PF15397_consen 208 EIPQ 211 (258)
T ss_pred HHHH
Confidence 5443
No 39
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.39 E-value=98 Score=41.06 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------hhcCCCCChhHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVK-------QSIANPKNTEDYKLR 547 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~-------q~~~~~s~~e~~r~~ 547 (621)
..++..|.+++.++.-.+..|..++.....-+......+..|..++++..+++..|.. +...-....++++.+
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555556666666666666666666666677777766666665521 222223445555555
Q ss_pred HHHHhhhhhhhhH-------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 007021 548 AEEIAKFITVQDK-------EMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF 598 (621)
Q Consensus 548 ~E~i~~f~~~q~k-------em~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~ 598 (621)
.++...=+..|.. |+.++..--++-...|+..++.|+++|=..--+|+-.+
T Consensus 1141 Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1141 LEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443222222222 33333333333445566677777777665544444433
No 40
>PHA03346 US22 family homolog; Provisional
Probab=69.30 E-value=8.1 Score=44.33 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=9.7
Q ss_pred CCCCCCCCCccccCCCCCch
Q 007021 196 DSNVSDDSDDELLSDEFDSD 215 (621)
Q Consensus 196 ~~~~~~d~dd~~~~dd~Dsd 215 (621)
.++..+|+|++..+|=+|.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~ 459 (520)
T PHA03346 440 WEDLGFDLDEDDVYDLKDVD 459 (520)
T ss_pred cccCCccccccccccchhhh
Confidence 33445555555555544443
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=68.86 E-value=67 Score=39.95 Aligned_cols=119 Identities=17% Similarity=0.230 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------------HHhh-cCCCCChh
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE-------------VKQS-IANPKNTE 542 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee-------------~~q~-~~~~s~~e 542 (621)
-+-.|.+++...+...-..+.+++.+...|+...++.+++..++.+.-...++. ++|. ...+-..+
T Consensus 295 ~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e 374 (1174)
T KOG0933|consen 295 EVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLE 374 (1174)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554444443322222211 1221 12222333
Q ss_pred HHHHHHHHHhhhhhhhhHhH----HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHhh
Q 007021 543 DYKLRAEEIAKFITVQDKEM----EEFVAARDRLIKFHGE-KMDAMRRRHWEEEVELE 595 (621)
Q Consensus 543 ~~r~~~E~i~~f~~~q~kem----~~f~~er~kl~~~~~~-~~a~~k~~~~~ee~~le 595 (621)
.++.-++-++.=+.-.+.+- .++-+.|.-+-...-+ +.++||.+|.+.||++-
T Consensus 375 ~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~ 432 (1174)
T KOG0933|consen 375 KAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLR 432 (1174)
T ss_pred HHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333222222211 1222334444444333 77888888888887753
No 42
>PRK00106 hypothetical protein; Provisional
Probab=68.08 E-value=2.2e+02 Score=33.16 Aligned_cols=119 Identities=17% Similarity=0.174 Sum_probs=58.2
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhhcCC-CCChhHHHHHHHHHhhhhhhhhHhHHHHH
Q 007021 491 HSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE---QNKEEVKQSIAN-PKNTEDYKLRAEEIAKFITVQDKEMEEFV 566 (621)
Q Consensus 491 ~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~---~~~ee~~q~~~~-~s~~e~~r~~~E~i~~f~~~q~kem~~f~ 566 (621)
.++..|..+......|.+..++.+.-.++...+.. +-.+++.+.... ..-.++...++|.|+..+.-+.|++
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~---- 173 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREI---- 173 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH----
Confidence 55566666666665555555444443333322221 111222111111 0111223335566666666555542
Q ss_pred HHHHHHHHhhhh---hHHHHHHHHHHHHHHh--hhhhHHHHHHHHHhhcCCcccccc
Q 007021 567 AARDRLIKFHGE---KMDAMRRRHWEEEVEL--EKGFDAELTQLMEKYSTHITEVAA 618 (621)
Q Consensus 567 ~er~kl~~~~~~---~~a~~k~~~~~ee~~l--eke~~~~l~~lm~k~~~~~~~~~~ 618 (621)
|++.=++ .-++...+..+++.+. +++...=|+.-|+.|..+.+.+..
T Consensus 174 -----l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~~~~~e~t 225 (535)
T PRK00106 174 -----ILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAGEYVTEQT 225 (535)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhe
Confidence 2222221 2234445556665544 455566699999999998876654
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.22 E-value=1.4e+02 Score=34.86 Aligned_cols=58 Identities=17% Similarity=0.391 Sum_probs=37.7
Q ss_pred cCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHH
Q 007021 535 IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFH---GEKMDAMRRRHWEEEV 592 (621)
Q Consensus 535 ~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~---~~~~a~~k~~~~~ee~ 592 (621)
+++---+-|.|++..++.+-+.+--||.++|-+|+..|...- +.+...+--.+|.|.-
T Consensus 406 D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~~~~~ 466 (546)
T PF07888_consen 406 DCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKWKEAA 466 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 344333456666777788888888899999999988876543 3344444455565543
No 44
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.87 E-value=1.5e+02 Score=37.08 Aligned_cols=47 Identities=9% Similarity=0.212 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
-..+.-+..+|+++.+.|.+++-+|+.....=.+.-....+|.++.+
T Consensus 327 l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 327 LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34566677888888888999888888877665555555555555443
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.40 E-value=1.2e+02 Score=35.49 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=14.2
Q ss_pred HhhhhhHHHHHHHHHhh
Q 007021 593 ELEKGFDAELTQLMEKY 609 (621)
Q Consensus 593 ~leke~~~~l~~lm~k~ 609 (621)
.||+++..-+.+||.|.
T Consensus 506 ~le~~~~~~f~~l~~k~ 522 (650)
T TIGR03185 506 QLEEEITKSFKKLMRKH 522 (650)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 47888899999999874
No 46
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.05 E-value=42 Score=40.06 Aligned_cols=111 Identities=15% Similarity=0.267 Sum_probs=79.7
Q ss_pred ccccccHHHHHHHHhhhcch-hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--
Q 007021 454 KFEMRSYHEMVVNQIRQMSE-DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE-- 530 (621)
Q Consensus 454 kgdLKSisEmv~E~~R~m~k-~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee-- 530 (621)
.-+|..++...++++..|.. -..-++.|+++++.-.+.|+.||.+......-|..++.|.+.|++-....++...-.
T Consensus 139 q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~t 218 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVT 218 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44777888888888776664 355789999999999999999999998888999999999999987664433322211
Q ss_pred --------------------------------HHhh----cCCCCChhHHHHHHHHHhhhhhhhhHhHHH
Q 007021 531 --------------------------------VKQS----IANPKNTEDYKLRAEEIAKFITVQDKEMEE 564 (621)
Q Consensus 531 --------------------------------~~q~----~~~~s~~e~~r~~~E~i~~f~~~q~kem~~ 564 (621)
|+.+ ++-..+.|=...|+.-+.-+..+|.+++.+
T Consensus 219 lv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~ 288 (739)
T PF07111_consen 219 LVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCR 288 (739)
T ss_pred HHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 122344455566777788888888887764
No 47
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.01 E-value=70 Score=25.50 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
.-..+...+...|...+.-|..|+.....+...|.+.+.+..++.++.|
T Consensus 15 ~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 15 ELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5667888889999999999999999999999999999999888877653
No 48
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=64.97 E-value=1.9e+02 Score=36.98 Aligned_cols=16 Identities=38% Similarity=0.312 Sum_probs=8.5
Q ss_pred hhhhhhHhHHHHHHHH
Q 007021 554 FITVQDKEMEEFVAAR 569 (621)
Q Consensus 554 f~~~q~kem~~f~~er 569 (621)
-..+-.|.|+.-++.|
T Consensus 1673 ~~~l~~~r~~g~~~ar 1688 (1758)
T KOG0994|consen 1673 VDRLLEKRMEGSQAAR 1688 (1758)
T ss_pred HHHHHHHHhhcchhHH
Confidence 3344555666555554
No 49
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=64.41 E-value=3.6 Score=49.82 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=6.5
Q ss_pred CCCCCCCCCc
Q 007021 98 GSSGRAPAKT 107 (621)
Q Consensus 98 ~~~~~~~~n~ 107 (621)
+|..|++||-
T Consensus 1271 ~G~FHP~g~e 1280 (1516)
T KOG1832|consen 1271 GGGFHPSGNE 1280 (1516)
T ss_pred cccccCCCce
Confidence 3666777765
No 50
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=63.75 E-value=1.3e+02 Score=34.72 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=42.9
Q ss_pred HHHHHHHHhhhcc---hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 460 YHEMVVNQIRQMS---EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 460 isEmv~E~~R~m~---k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
|.++..+.-|.|= ..++.|.+|...++..++||++-.....-..+-|.++--....|..|+
T Consensus 371 iEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 371 IEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455555545443 357788888888888888888877777777777777776666666665
No 51
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=63.29 E-value=2.4 Score=50.64 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=0.0
Q ss_pred EccCCCCCCCCcccccCchHHhhhccc
Q 007021 253 HCPACQGGPGAIDWYRGLQPLMTHAKT 279 (621)
Q Consensus 253 ~CP~C~gkkkq~D~Y~~l~~LLqHA~g 279 (621)
-||-|.-+.+. ..|. +||-=...
T Consensus 734 AfPT~aek~~r-~vy~---d~LaDGlS 756 (787)
T PF03115_consen 734 AFPTLAEKERR-NVYM---DALADGLS 756 (787)
T ss_dssp ---------------------------
T ss_pred cCCCchhhhhh-hhHH---hhhccCCC
Confidence 35666655443 4344 66644333
No 52
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.77 E-value=3.6e+02 Score=33.04 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=32.5
Q ss_pred cCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 007021 535 IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVEL 594 (621)
Q Consensus 535 ~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~l 594 (621)
+++-|+.+.+ |.|..|-+.-.|+|. +||.-.-.-|+.++-.|+-+|=+--.+|
T Consensus 1058 n~~~s~ae~r----ekIkqF~~QEekRqk---~er~~q~qKhenqmrdl~~qce~ni~EL 1110 (1187)
T KOG0579|consen 1058 NANMSNAEMR----EKIKQFDEQEEKRQK---AEREDQDQKHENQMRDLKEQCEENIIEL 1110 (1187)
T ss_pred cCCCCcHHHH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544 667777777777666 6666666666666666665554444444
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=62.69 E-value=3.1e+02 Score=34.37 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHhhcCCCCChhHHHHHHHHHhhhhh
Q 007021 531 VKQSIANPKNTEDYKLRAEEIAKFIT 556 (621)
Q Consensus 531 ~~q~~~~~s~~e~~r~~~E~i~~f~~ 556 (621)
.+....+-++.++.++..|.++.=|+
T Consensus 402 ~kelE~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 402 QKELEKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34445566667777766665555443
No 54
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.26 E-value=81 Score=37.76 Aligned_cols=71 Identities=21% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCccc
Q 007021 543 DYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITE 615 (621)
Q Consensus 543 ~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~~~~~~ 615 (621)
+...|+..+..-.+.|.+++.++.++|+.|. ..-++.|.-..+-++..=.|.+.++.=|..+ ..+.|..+.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~-~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l-~~~~P~LS~ 632 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLR-ESAEKLAERYEEAKDKQEKLMKRVDRVLQLL-NSQLPVLSE 632 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCH
Confidence 4455666666666677777777777666653 3334444444444555555666666555544 344555443
No 55
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=62.11 E-value=41 Score=30.19 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQH 524 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h 524 (621)
.+.+..++..-|-.|..||.+..-+...|+.+++.++.+|+..+++.
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666667777788888888888888888888888877555443
No 56
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=60.94 E-value=2.4e+02 Score=31.66 Aligned_cols=43 Identities=28% Similarity=0.286 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 007021 561 EMEEFVAARDRLIKF--HGEKMDAMRRRHWEEEVELEKGFDAELT 603 (621)
Q Consensus 561 em~~f~~er~kl~~~--~~~~~a~~k~~~~~ee~~leke~~~~l~ 603 (621)
-+++|+-||+-|+-. .++|..+|.|.-++-.-+.-|-+++.+.
T Consensus 246 ~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 246 LIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344455554444432 3457788888877777666676666554
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.90 E-value=1.9e+02 Score=32.80 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=52.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCC
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPK 539 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s 539 (621)
.+-+.|..+...|+.++..+..++....+-..+|.+..+|+.++..++.-.+..-...++.+..+.+
T Consensus 168 ~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~ 234 (420)
T COG4942 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5667788888999999999999999999999999999999999988876655543333444444444
No 58
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.66 E-value=2.7e+02 Score=33.64 Aligned_cols=44 Identities=30% Similarity=0.250 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhhHhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHH
Q 007021 548 AEEIAKFITVQDKEMEEFVAARDRLIKFHG---EKMDAMRRRHWEEEVE 593 (621)
Q Consensus 548 ~E~i~~f~~~q~kem~~f~~er~kl~~~~~---~~~a~~k~~~~~ee~~ 593 (621)
.+.|.+.+.-|+-+.++++.+-..++..-- +..+ -..+|+||++
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~--tv~~LqeE~e 285 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQLREELATLRENRE--TVGLLQEELE 285 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHH
Confidence 457777777777777766655222221111 1222 2348888875
No 59
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=60.51 E-value=1.9e+02 Score=28.99 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCC----CChhHHHHHHHHHhhhhh
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANP----KNTEDYKLRAEEIAKFIT 556 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~----s~~e~~r~~~E~i~~f~~ 556 (621)
+...+......++.+|..+.+....|.+.++..+.-.+.......++....+.+.... .-..+...++|.|+..+.
T Consensus 69 ~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAglT~ 148 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAGLTA 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3344455556666666666666666666665544444444333222222211111100 111223334455555554
Q ss_pred hhhHhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHH--hhhhhHHHHHHHHHhhcCCc
Q 007021 557 VQDKEMEEFVAARDRLIKFHGE---KMDAMRRRHWEEEVE--LEKGFDAELTQLMEKYSTHI 613 (621)
Q Consensus 557 ~q~kem~~f~~er~kl~~~~~~---~~a~~k~~~~~ee~~--leke~~~~l~~lm~k~~~~~ 613 (621)
=+.| +.|++.=++ .-++...+..+++.+ .+++...=|..-|..|.+++
T Consensus 149 eEAk---------~~Ll~~le~e~~~e~a~~ir~~eeeak~~A~~~Ar~Ii~~AiQR~A~e~ 201 (201)
T PF12072_consen 149 EEAK---------EILLEKLEEEARREAAALIRRIEEEAKEEADKKARRIIATAIQRYASEH 201 (201)
T ss_pred HHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4444 334433332 223444445555543 35666777888888887764
No 60
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.44 E-value=1.5e+02 Score=29.98 Aligned_cols=21 Identities=10% Similarity=0.257 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 007021 479 IYLKNRVVKEQRHSKALEATF 499 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ 499 (621)
..+...|.......+.|..++
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i 43 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRI 43 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 61
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=59.91 E-value=5.2 Score=25.41 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=14.0
Q ss_pred eEccCCCCCCCCcccccCchHHhhhc
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
|.||+|+- - |....+|.+|-
T Consensus 1 ~~C~~C~~-----~-~~~~~~l~~H~ 20 (24)
T PF13894_consen 1 FQCPICGK-----S-FRSKSELRQHM 20 (24)
T ss_dssp EE-SSTS------E-ESSHHHHHHHH
T ss_pred CCCcCCCC-----c-CCcHHHHHHHH
Confidence 78999963 2 66688888884
No 62
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=59.23 E-value=6.1 Score=46.86 Aligned_cols=6 Identities=17% Similarity=0.911 Sum_probs=3.0
Q ss_pred eeEEEe
Q 007021 54 WEVYVR 59 (621)
Q Consensus 54 w~~~~~ 59 (621)
|..+.+
T Consensus 512 ~~~~~~ 517 (784)
T PF04931_consen 512 WKTLKK 517 (784)
T ss_pred HHHHHH
Confidence 555543
No 63
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=5.5 Score=49.59 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=8.1
Q ss_pred eEEEecccCCCCCC
Q 007021 55 EVYVRKSKNKAGSG 68 (621)
Q Consensus 55 ~~~~~k~k~~~~~~ 68 (621)
..|-|+||+-...+
T Consensus 1627 sevlkrskkeerai 1640 (3015)
T KOG0943|consen 1627 SEVLKRSKKEERAI 1640 (3015)
T ss_pred HHHHhhhhhhhccc
Confidence 33457777665555
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=57.86 E-value=3.7e+02 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=11.0
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
.+....|+..+.+++.+...+.+|++.|
T Consensus 184 ~ee~e~L~~~~kel~~~~e~l~~E~~~L 211 (546)
T PF07888_consen 184 EEEMEQLKQQQKELTESSEELKEERESL 211 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444333444333
No 65
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=57.65 E-value=20 Score=37.21 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=39.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC--CCCcceEEEEeCCCccc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP--QGHRGMSVLIFESSAGG 392 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~--~GH~G~aVV~F~kdwsG 392 (621)
.++|-|++... +.+.|.+.|+.|.++ .|+.++.+ ....|+++|.|.+--..
T Consensus 271 ~lfV~NL~~~~---------~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A 324 (352)
T TIGR01661 271 CIFVYNLSPDT---------DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEA 324 (352)
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHH
Confidence 37789997633 467899999999997 58888876 34589999999875443
No 66
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=57.58 E-value=4e+02 Score=35.89 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRA 548 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~ 548 (621)
....++||..+.++..+|....+++..|-...++++.+|.+.-++...........+.+.
T Consensus 900 ~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek 959 (1930)
T KOG0161|consen 900 RAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEK 959 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666655554444333333333333333333
No 67
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.53 E-value=5.1e+02 Score=33.07 Aligned_cols=7 Identities=57% Similarity=1.478 Sum_probs=3.4
Q ss_pred EccCCCC
Q 007021 253 HCPACQG 259 (621)
Q Consensus 253 ~CP~C~g 259 (621)
.||.|..
T Consensus 679 ~C~LC~R 685 (1311)
T TIGR00606 679 CCPVCQR 685 (1311)
T ss_pred cCCCCCC
Confidence 4555543
No 68
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=57.41 E-value=6.6 Score=46.56 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 007021 288 HRELAELLD 296 (621)
Q Consensus 288 HrALa~lLe 296 (621)
-.+||.+.+
T Consensus 738 D~~La~~Fk 746 (784)
T PF04931_consen 738 DEQLAAIFK 746 (784)
T ss_pred HHHHHHHHH
Confidence 334444433
No 69
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=56.33 E-value=47 Score=29.67 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR 519 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r 519 (621)
..+..-+.|+.++.....+...||..+.+++..|..+||.++-|..|
T Consensus 43 ~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~r 89 (89)
T PF13747_consen 43 RLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLDR 89 (89)
T ss_pred HHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555667888888888999999999999999999999998887654
No 70
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=56.29 E-value=7.1 Score=46.97 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhh-hHHHHH
Q 007021 566 VAARDRLIKFHGE-KMDAMR 584 (621)
Q Consensus 566 ~~er~kl~~~~~~-~~a~~k 584 (621)
.+|+.||...|-. +|.||+
T Consensus 779 r~E~~KLk~q~KkErKGA~R 798 (840)
T PF04147_consen 779 RAELRKLKAQLKKERKGAMR 798 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4555566555544 566655
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.04 E-value=4.1e+02 Score=33.90 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEEN 513 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~ 513 (621)
|..++......++.++..+.+....|.....+.
T Consensus 749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444455555555555555555555444
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.92 E-value=99 Score=39.24 Aligned_cols=41 Identities=5% Similarity=-0.002 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRI 515 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~ 515 (621)
...+.+...+|.+-...+++|.-++-+.+..-..+.+.-..
T Consensus 1611 E~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~s 1651 (1758)
T KOG0994|consen 1611 EKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGS 1651 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45555566666666666666666655555444444443333
No 73
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=55.77 E-value=4.2e+02 Score=32.19 Aligned_cols=8 Identities=13% Similarity=0.480 Sum_probs=3.2
Q ss_pred hHHHHHHh
Q 007021 354 NQELLEYF 361 (621)
Q Consensus 354 ~~eL~d~l 361 (621)
...+.+.|
T Consensus 119 ~~~~~~~l 126 (1164)
T TIGR02169 119 LSEIHDFL 126 (1164)
T ss_pred HHHHHHHH
Confidence 33444433
No 74
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=55.16 E-value=1e+02 Score=26.54 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
-.+....+.+.|.+-..+.+++|.....+...+.....+...|..|.+
T Consensus 24 LSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 24 LSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445566777777777888888888888888888888777777654
No 75
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=55.15 E-value=3.9 Score=43.88 Aligned_cols=13 Identities=15% Similarity=0.608 Sum_probs=7.4
Q ss_pred eeecCCCCeeEccC
Q 007021 243 EEINEPARQWHCPA 256 (621)
Q Consensus 243 kvkn~~~~tf~CP~ 256 (621)
||... ...|+|-+
T Consensus 340 kv~r~-k~~wk~~l 352 (375)
T PF03153_consen 340 KVTRV-KNKWKCTL 352 (375)
T ss_dssp EEEEE-TTEEEEEE
T ss_pred ccccc-cceeEEEe
Confidence 34444 56677754
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.97 E-value=3.5e+02 Score=30.35 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=4.2
Q ss_pred HHhhhcccc
Q 007021 272 PLMTHAKTK 280 (621)
Q Consensus 272 ~LLqHA~gv 280 (621)
.+|....+.
T Consensus 154 ~il~~l~~~ 162 (562)
T PHA02562 154 KLVEDLLDI 162 (562)
T ss_pred HHHHHHhCC
Confidence 444444444
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.51 E-value=1.8e+02 Score=33.07 Aligned_cols=61 Identities=21% Similarity=0.321 Sum_probs=28.6
Q ss_pred cchhhhHHHHHHHHHHHHHHhHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007021 471 MSEDNQQLIYLKNRVVKEQRHSKALE---ATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEV 531 (621)
Q Consensus 471 m~k~nklv~~L~nqIe~knk~lqeLE---~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~ 531 (621)
-++.++-|+.|...++.-.+....+- ......+..+..-|.+++...+|.++...+.-||.
T Consensus 8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544433333222222 22233344555555566666666665555555553
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.14 E-value=2.9e+02 Score=29.16 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHH
Q 007021 586 RHWEEEVELEKGFDAELTQLME 607 (621)
Q Consensus 586 ~~~~ee~~leke~~~~l~~lm~ 607 (621)
.+-++.-+|..+++.+|....+
T Consensus 160 ~~~~~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 160 ELSSKREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHhcCHHHHHHHH
Confidence 4555666666667776665544
No 79
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=53.59 E-value=97 Score=29.58 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=42.8
Q ss_pred hhhHHHHHHHH-------HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007021 474 DNQQLIYLKNR-------VVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (621)
Q Consensus 474 ~nklv~~L~nq-------Ie~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~ 527 (621)
..+.+.+|-.. -+...+++++|+..+.+....|...++|.+.|+.++...+...
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555433 3677889999999999999999999999999999887776544
No 80
>PRK02224 chromosome segregation protein; Provisional
Probab=52.94 E-value=4.8e+02 Score=31.30 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Q 007021 541 TEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 573 (621)
Q Consensus 541 ~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~ 573 (621)
.+..+.+.+.+..-+.--..+.+++.++++.|.
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~ 680 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333333333333444444433333
No 81
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.64 E-value=1e+02 Score=33.44 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH--hhHHHHHhh
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE-NRIVKQRTKMQHE--QNKEEVKQS 534 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE-~d~L~~r~k~~h~--~~~ee~~q~ 534 (621)
...--|-+|+.++.+....|++=|..+.++..-|.||-|+ ++-=+.|+--|+. +-..||||+
T Consensus 65 QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQL 129 (305)
T PF15290_consen 65 QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQL 129 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577899999999999999999999999999999888 7777888865555 777777776
No 82
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=52.38 E-value=5.2e+02 Score=32.81 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHhh
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE-----NRIVKQRTKMQHEQN 527 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE-----~d~L~~r~k~~h~~~ 527 (621)
.++.|+++|-.-..++.+.|..+.++...|++.-+. +++...|..+.+.+|
T Consensus 669 e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 669 EASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444444333 333333344555566
No 83
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=51.25 E-value=3.4e+02 Score=29.34 Aligned_cols=40 Identities=33% Similarity=0.373 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhH
Q 007021 560 KEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFD 599 (621)
Q Consensus 560 kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~ 599 (621)
+..++-+...+.+++..++.+.++++..+++|.+|++|-+
T Consensus 136 k~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~ 175 (276)
T PF12037_consen 136 KMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETE 175 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445667778899999999999999999999999998743
No 84
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=50.75 E-value=5.1 Score=45.63 Aligned_cols=89 Identities=11% Similarity=0.265 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh-cCCCCChhHHHHHHHHHhhhhhhhh------HhH
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS-IANPKNTEDYKLRAEEIAKFITVQD------KEM 562 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~-~~~~s~~e~~r~~~E~i~~f~~~q~------kem 562 (621)
+.|....-++.+....|.--.++..+|.+.++..++.-.+.+++. ..+.+... .-|.+.+.... .+|
T Consensus 383 ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmk------sII~RL~~vEeELrre~~~m 456 (495)
T PF12004_consen 383 ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMK------SIISRLMAVEEELRREHAEM 456 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHH------HHHhhhhhhhhhhhhhHHHH
Confidence 444444444444444444444555555555555555444443322 22222111 12222222221 167
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 007021 563 EEFVAARDRLIKFHGEKMDAMR 584 (621)
Q Consensus 563 ~~f~~er~kl~~~~~~~~a~~k 584 (621)
......|.+||++.+..+++|.
T Consensus 457 ~~~~~~kqrii~aQ~~~i~~Ld 478 (495)
T PF12004_consen 457 QAVLDHKQRIIDAQEKRIAALD 478 (495)
T ss_dssp ----------------------
T ss_pred hcccccchHHHHHhhhhccccc
Confidence 7777788899999988888875
No 85
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=50.72 E-value=1.1e+02 Score=37.20 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH--------------------------HHhhcCCCCChhHHHHHHHHHhhhhhh
Q 007021 504 EKLRETMEENRIVKQRTKMQHEQNKEE--------------------------VKQSIANPKNTEDYKLRAEEIAKFITV 557 (621)
Q Consensus 504 ~sL~r~mEE~d~L~~r~k~~h~~~~ee--------------------------~~q~~~~~s~~e~~r~~~E~i~~f~~~ 557 (621)
..|+-+--||-.||+|.+..-.+..|. -.|+....-+.|..+.+.|++.+.|+-
T Consensus 387 LA~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~ 466 (861)
T PF15254_consen 387 LAMQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIEN 466 (861)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Confidence 445555577777877776554444442 133334444455666666677766666
Q ss_pred hhHhHHHH
Q 007021 558 QDKEMEEF 565 (621)
Q Consensus 558 q~kem~~f 565 (621)
|..|-..|
T Consensus 467 q~~Enk~~ 474 (861)
T PF15254_consen 467 QKEENKRL 474 (861)
T ss_pred HHHHHHHH
Confidence 65544433
No 86
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=50.70 E-value=24 Score=30.54 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=25.8
Q ss_pred EccCCCCCCCCcccccCchHHhhhccccC---c-----hhhhhHHHHHHHHH
Q 007021 253 HCPACQGGPGAIDWYRGLQPLMTHAKTKG---S-----KRVKLHRELAELLD 296 (621)
Q Consensus 253 ~CP~C~gkkkq~D~Y~~l~~LLqHA~gvG---a-----k~kalHrALa~lLe 296 (621)
.||+|..+...+| |+++.-|-+--+..| . --...||.|++-+.
T Consensus 7 ~c~~~~~~~~~iD-YKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~l~~aIK 57 (70)
T TIGR00165 7 YCRFTAEGIQFID-YKDLDLLKKFISERGKILPRRITGTSAKYQRRLARAIK 57 (70)
T ss_pred CCCccCCCCCcCC-ccCHHHHHHhcCCCCeEcCCccCCcCHHHHHHHHHHHH
Confidence 5999987666789 996655544433334 1 12345666665554
No 87
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.44 E-value=4.6e+02 Score=30.38 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=6.8
Q ss_pred hhhHHHHHHHHHHh
Q 007021 285 VKLHRELAELLDEE 298 (621)
Q Consensus 285 kalHrALa~lLe~d 298 (621)
...+.+|..|++.+
T Consensus 122 ~~i~~~l~~l~~~e 135 (569)
T PRK04778 122 EQILEELQELLESE 135 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 88
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=49.44 E-value=5.7e+02 Score=31.16 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=49.5
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
-+.+.+.+-+|+.+.+.+ |.--...|+...+-+++|+.-+..++++|..-+.|+.-|++++.
T Consensus 90 Ik~WKv~vesd~~qKErk--------Lqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nn 151 (786)
T PF05483_consen 90 IKKWKVQVESDLKQKERK--------LQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENN 151 (786)
T ss_pred HHHHHhhhhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhh
Confidence 445666666777654433 55556789999999999999999999999999999999988873
No 89
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=48.46 E-value=9.7 Score=40.43 Aligned_cols=24 Identities=54% Similarity=0.630 Sum_probs=10.9
Q ss_pred CCCCCCCCCccccC-CCCCchhhhh
Q 007021 196 DSNVSDDSDDELLS-DEFDSDTSQK 219 (621)
Q Consensus 196 ~~~~~~d~dd~~~~-dd~Dsd~se~ 219 (621)
+++..+|+|+|-+| +++|+|+-|+
T Consensus 237 ~~~~~~~s~~d~d~e~esd~de~Ee 261 (303)
T KOG3064|consen 237 DSDESDDSDEDSDSEDESDSDEIEE 261 (303)
T ss_pred hhhhhhhcccccccccCCchhhHHH
Confidence 33444555555333 3444444444
No 90
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=47.94 E-value=94 Score=35.35 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=46.7
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
|++++.++++...- +----|..|+.+-..-|+|+|.|+.+|..+++.|.+.-+|-+-|
T Consensus 108 Di~~~l~gvnSGLv---rAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeEL 165 (558)
T PF15358_consen 108 DITELLEGVNSGLV---RAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEEL 165 (558)
T ss_pred cHHHHHhhhcccce---ecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHH
Confidence 77888888888776 33345788999999999999999999999999998876554433
No 91
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.79 E-value=3.4e+02 Score=29.37 Aligned_cols=133 Identities=15% Similarity=0.137 Sum_probs=74.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcC---CCCChhHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIA---NPKNTEDYKLRAE 549 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~---~~s~~e~~r~~~E 549 (621)
..-..|..+-++|...+..+-..-.....+...|+..+.+...+-..+|..++...++..+... ....+.=+|-+.+
T Consensus 47 ~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rrtq~~ 126 (297)
T KOG0810|consen 47 DDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRRTQTS 126 (297)
T ss_pred HHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHHHHHH
Confidence 5556666666666666644443344444556777777777777777777777766666444432 2222333333444
Q ss_pred HHh-hhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhcCCcc
Q 007021 550 EIA-KFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHIT 614 (621)
Q Consensus 550 ~i~-~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~~~~~ 614 (621)
.++ +|. +-|.+|-..+.++.....++..... +-+.-|.--|++|+.+++-=++..|
T Consensus 127 ~~~kkf~----~~M~~f~~~~~~~r~~~k~~i~Rql-----~i~~~~~~~de~ie~~ie~g~~~~f 183 (297)
T KOG0810|consen 127 ALSKKLK----ELMNEFNRTQSKYREEYKERIQRQL-----FIVGGEETTDEEIEEMIESGGSEVF 183 (297)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----hhhCCCcCChHHHHHHHHCCChHHH
Confidence 333 233 3466777777777666555443322 2333344566777777766444444
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.71 E-value=7.4e+02 Score=32.04 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=6.0
Q ss_pred chHHhhhccccC
Q 007021 270 LQPLMTHAKTKG 281 (621)
Q Consensus 270 l~~LLqHA~gvG 281 (621)
+.+.-+|++=.|
T Consensus 332 iedik~HpFF~g 343 (1317)
T KOG0612|consen 332 IEDIKNHPFFEG 343 (1317)
T ss_pred HHHHHhCccccC
Confidence 445555555443
No 93
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.43 E-value=2.9e+02 Score=32.77 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHhhcCCc
Q 007021 597 GFDAELTQLMEKYSTHI 613 (621)
Q Consensus 597 e~~~~l~~lm~k~~~~~ 613 (621)
.....|...|-.|.+.+
T Consensus 186 ~rl~~lk~~l~~~~~~i 202 (611)
T KOG2398|consen 186 SRLSFLKEELWLFANQI 202 (611)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444455554443
No 94
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=47.06 E-value=7.2e+02 Score=31.66 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=49.8
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSK------ALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lq------eLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
-+-+|+-=|.+-|.| ++ ++|..|.--+..++.+-+++. .||..+-+...+|.-|-.+++..+.+|-+.|+
T Consensus 254 erlmDs~fykdRvee-lk---edN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~e 329 (1195)
T KOG4643|consen 254 ERLMDSDFYKDRVEE-LK---EDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHE 329 (1195)
T ss_pred hhhhhhHHHHHHHHH-HH---hhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333444445554433 34 577777666666666555553 57777788888888888888888888888888
Q ss_pred hhHHH
Q 007021 526 QNKEE 530 (621)
Q Consensus 526 ~~~ee 530 (621)
+|..-
T Consensus 330 EnstL 334 (1195)
T KOG4643|consen 330 ENSTL 334 (1195)
T ss_pred HHHHH
Confidence 66543
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=46.98 E-value=6e+02 Score=31.69 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=19.3
Q ss_pred hhhhhhhhhhHH-HHHHHHhcccCceee
Q 007021 219 KSHDTRKKSRWF-KKFFESLESLTVEEI 245 (621)
Q Consensus 219 ~s~e~~k~~kwf-~K~ye~Lksg~~kvk 245 (621)
.+||.-|++-.- .+||.+|.++....-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalh 61 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALH 61 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666665 699999999976543
No 96
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.90 E-value=2.9e+02 Score=33.44 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=14.4
Q ss_pred ccCCCCCchhhhhhhhhhhhhhHHHHHHHH
Q 007021 207 LLSDEFDSDTSQKSHDTRKKSRWFKKFFES 236 (621)
Q Consensus 207 ~~~dd~Dsd~se~s~e~~k~~kwf~K~ye~ 236 (621)
...|+++.+=.+.-...+..+.+.....+.
T Consensus 144 ~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~ 173 (782)
T PRK00409 144 EVKDSASEKLRGIRRQLRRKKSRIREKLES 173 (782)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555554444444444444555544443
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=46.79 E-value=4.8e+02 Score=31.88 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=54.6
Q ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhH
Q 007021 464 VVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTED 543 (621)
Q Consensus 464 v~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~ 543 (621)
++-..- |.-+.|.-|.+.|++...+|..+|. .++|-+...+-+.+.+.. +.-.....+|-.+|
T Consensus 344 ~q~eLd---K~~~~i~~Ln~~leaReaqll~~e~---------~ka~lee~~~n~~~e~~~-----~k~~~s~~ssl~~e 406 (961)
T KOG4673|consen 344 VQLELD---KTKKEIKMLNNALEAREAQLLADEI---------AKAMLEEEQLNSVTEDLK-----RKSNESEVSSLREE 406 (961)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhHHHHHH-----HHhhcccccchHHH
Confidence 444444 6666788888888887777766553 344444433333332211 12234567888899
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHH
Q 007021 544 YKLRAEEIAKFITVQDKEMEEFVAA 568 (621)
Q Consensus 544 ~r~~~E~i~~f~~~q~kem~~f~~e 568 (621)
+.+|+-.+.+-+..-.||+.-+.-|
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e 431 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRRE 431 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999988888777777766644444
No 98
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.70 E-value=3.9e+02 Score=32.69 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFS---------IVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~n---------e~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
..+.+|..++..+.+.+..+...+. .....|..+.-|++.++.++.+++.
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~ 457 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRE 457 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888887 5557777888888888888766654
No 99
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.60 E-value=1.3e+02 Score=31.06 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKE 529 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~e 529 (621)
...-.++.|..++..-...+..|+..+.+...++.|+.-|.+-.++|+....++.+.
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~ 107 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYS 107 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888888888999999999999999999999999999999776665443
No 100
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=46.60 E-value=1.8e+02 Score=35.95 Aligned_cols=81 Identities=27% Similarity=0.284 Sum_probs=39.8
Q ss_pred hhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 007021 526 QNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAA-------RDRLIKFHGEKMDAMRRRHWEEEVELEKGF 598 (621)
Q Consensus 526 ~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~e-------r~kl~~~~~~~~a~~k~~~~~ee~~leke~ 598 (621)
-|.|+|+|-..+.-..-+. ..|..-..++--|.+++++++- -+++.+.+|--..-+|+-|-+-.-+|||+|
T Consensus 897 tcaE~i~q~kdee~altdh--ekeasicl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ 974 (1424)
T KOG4572|consen 897 TCAECIKQMKDEEEALTDH--EKEASICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEF 974 (1424)
T ss_pred HHHHHHHHcchHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHH
Confidence 4556666654433222111 3344444455555566666554 233333333344455555666666666666
Q ss_pred HHHHHHHHHhh
Q 007021 599 DAELTQLMEKY 609 (621)
Q Consensus 599 ~~~l~~lm~k~ 609 (621)
- +|..|..||
T Consensus 975 a-el~eleqk~ 984 (1424)
T KOG4572|consen 975 A-ELIELEQKA 984 (1424)
T ss_pred H-HHHHHHHHH
Confidence 3 444454443
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=46.59 E-value=5.6e+02 Score=30.32 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=44.4
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
...+..+...+..+.+.+-..+|..|..+|+.-...++.|..++.++...+..+..++..+
T Consensus 315 ~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 315 EKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555577888999999999999999999988888888877776554443
No 102
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=45.96 E-value=21 Score=42.89 Aligned_cols=11 Identities=18% Similarity=0.737 Sum_probs=8.6
Q ss_pred CCCCcccccCC
Q 007021 149 EHGWNWQSRAG 159 (621)
Q Consensus 149 ~~g~~w~~~~~ 159 (621)
++||....-.+
T Consensus 865 ~GgW~fL~~~~ 875 (960)
T KOG1189|consen 865 DGGWSFLNVES 875 (960)
T ss_pred cCCeeeecCCC
Confidence 78999887655
No 103
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.73 E-value=3.6e+02 Score=27.81 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007021 579 KMDAMRRRHWEEEVELEKGFDAELTQLME 607 (621)
Q Consensus 579 ~~a~~k~~~~~ee~~leke~~~~l~~lm~ 607 (621)
+++-|+..-.++.|+-..+=.+|||++-+
T Consensus 171 kk~e~~~~SLe~~LeQK~kEn~ELtkICD 199 (207)
T PF05010_consen 171 KKEEMKVQSLEESLEQKTKENEELTKICD 199 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888877777789998754
No 104
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.25 E-value=3.6e+02 Score=33.54 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHhhcCCCCC-hhHHHHHHHHHhhhhhhhhHhHHHHHHHH
Q 007021 528 KEEVKQSIANPKN-TEDYKLRAEEIAKFITVQDKEMEEFVAAR 569 (621)
Q Consensus 528 ~ee~~q~~~~~s~-~e~~r~~~E~i~~f~~~q~kem~~f~~er 569 (621)
..|++++..+.++ .+..-..+.++.--.+.-|++|.+++.++
T Consensus 507 ~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 507 LIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3345555544332 23333345566666777777787777665
No 105
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.14 E-value=1.6e+02 Score=31.86 Aligned_cols=11 Identities=55% Similarity=0.839 Sum_probs=5.6
Q ss_pred HHHHHHHHhhh
Q 007021 567 AARDRLIKFHG 577 (621)
Q Consensus 567 ~er~kl~~~~~ 577 (621)
.+|+.||..|+
T Consensus 164 ~~rdeli~khG 174 (302)
T PF09738_consen 164 KQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHCC
Confidence 34555555553
No 106
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=45.00 E-value=1.9e+02 Score=31.05 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=27.9
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
.+.-++.....++.+... -+-..|..|+.+|......+.++...+.+....|...-++.+.+
T Consensus 188 ~L~~e~~~Lk~~~~e~~~---~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 188 ELEEELENLKQLVEEIES---CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555554444333 34444555555555444444444444444444444444333333
No 107
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.97 E-value=2.7e+02 Score=26.15 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=33.8
Q ss_pred HHHHHhhhcchhh----hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 007021 463 MVVNQIRQMSEDN----QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (621)
Q Consensus 463 mv~E~~R~m~k~n----klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE 512 (621)
......+++++.| ..|..++.+|......++.|+..|.+....+..++..
T Consensus 38 ~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~ 91 (150)
T PF07200_consen 38 ELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSN 91 (150)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3334444455555 6777777777777778888888887777777766544
No 108
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.79 E-value=3.3e+02 Score=31.15 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=36.4
Q ss_pred cchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 007021 471 MSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (621)
Q Consensus 471 m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE 512 (621)
+++-+.-|.+|.+-++.-+++++.|++.+.+-..+++..|.+
T Consensus 228 it~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~ 269 (439)
T KOG2911|consen 228 ITEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQALKE 269 (439)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335667788888899999999999999999999999999977
No 109
>PRK02224 chromosome segregation protein; Provisional
Probab=44.40 E-value=6.3e+02 Score=30.28 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007021 561 EMEEFVAARDRLIKFHGEKMDAMRRRH 587 (621)
Q Consensus 561 em~~f~~er~kl~~~~~~~~a~~k~~~ 587 (621)
..+.+-.+.+.|........+.|+.+|
T Consensus 709 ~l~~~~~~~~~L~~~~~~~~~~~~~~~ 735 (880)
T PRK02224 709 ALEALYDEAEELESMYGDLRAELRQRN 735 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555544445554444
No 110
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.37 E-value=7.4e+02 Score=31.98 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=23.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhccccCchhhhhHHHHHHHHH
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLD 296 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~gvGak~kalHrALa~lLe 296 (621)
--.|.|.+=|++.+..- +.+=|---+|..| .+-.|..|+.|+-
T Consensus 107 HksFtaIvGPNGSGKSN----VIDsmLFVFGfRA-~kiR~~klS~LIh 149 (1293)
T KOG0996|consen 107 HKSFTAIVGPNGSGKSN----VIDSMLFVFGFRA-SKIRSKKLSALIH 149 (1293)
T ss_pred CCCceeeECCCCCCchH----HHHHHHHHhhhhH-hHHhHHHHHHHHh
Confidence 34577777777755422 3344444455555 3344556666665
No 111
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=44.08 E-value=6.5e+02 Score=31.76 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHh
Q 007021 286 KLHRELAELLDEE 298 (621)
Q Consensus 286 alHrALa~lLe~d 298 (621)
+.+.||...|+..
T Consensus 530 ~y~~Aie~alG~~ 542 (1163)
T COG1196 530 KYETALEAALGNR 542 (1163)
T ss_pred HHHHHHHHHcccc
Confidence 4555555555543
No 112
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.35 E-value=2.1e+02 Score=29.95 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRE---------TMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTED 543 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r---------~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~ 543 (621)
+......||.+.|+.-++++..+|..+..++....+ .+++......|-+.+......-++.+..+.-+.+.
T Consensus 119 ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l~~e~ 198 (233)
T PF04065_consen 119 EKEEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDELDPEQ 198 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 346678999999999999999999998877765443 34566666666676666666667777766666666
Q ss_pred HHHHHHHHhhhhhh
Q 007021 544 YKLRAEEIAKFITV 557 (621)
Q Consensus 544 ~r~~~E~i~~f~~~ 557 (621)
..-..+.|.-||+.
T Consensus 199 V~~ikedieyYve~ 212 (233)
T PF04065_consen 199 VEDIKEDIEYYVES 212 (233)
T ss_pred HHHHHHHHHHHHHc
Confidence 66666777777764
No 113
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=43.34 E-value=11 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=17.5
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
+|.|..|.. . |..+..|+.|-.
T Consensus 1 ~~~C~~C~~-----~-F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGK-----T-FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTE-----E-ESSHHHHHHHHC
T ss_pred CCCCCccCC-----c-cCChhHHHHHhH
Confidence 489999962 3 888999999943
No 114
>PLN03120 nucleic acid binding protein; Provisional
Probab=43.30 E-value=53 Score=34.90 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHK 401 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLek 401 (621)
.+.|-|++.. .+-.+|++.|+.|+.+. +....+. .++|++.|.|... .+...|+.|..
T Consensus 6 tVfVgNLs~~---------tTE~dLrefFS~~G~I~~V~I~~d~-~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSLK---------ATERDIKEFFSFSGDIEYVEMQSEN-ERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeecC-CCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 4678888652 35788999999998874 5544333 4689999999654 77788886543
No 115
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.21 E-value=5.4e+02 Score=32.56 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=26.9
Q ss_pred CCCCcccccCchHHhhhccccCc---hhhhhHHHHHHHHHHhhhhcCCccCC
Q 007021 260 GPGAIDWYRGLQPLMTHAKTKGS---KRVKLHRELAELLDEELRRRGTSVIP 308 (621)
Q Consensus 260 kkkq~D~Y~~l~~LLqHA~gvGa---k~kalHrALa~lLe~dla~~~~sv~p 308 (621)
+++.+- -+|+.+..=|..+-+- ..-..+|--|.-|=+++..+.+++.-
T Consensus 221 ~kggV~-vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFs 271 (1041)
T KOG0243|consen 221 GKGGVI-VKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFS 271 (1041)
T ss_pred CcCcEE-EecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEE
Confidence 344433 4566665555544331 22244566777777787777776543
No 116
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.11 E-value=22 Score=39.93 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.2
Q ss_pred CCCCCCCccccCCCC
Q 007021 198 NVSDDSDDELLSDEF 212 (621)
Q Consensus 198 ~~~~d~dd~~~~dd~ 212 (621)
+..||++.|.+++++
T Consensus 286 eN~ddd~~d~d~e~~ 300 (514)
T KOG3130|consen 286 ENIDDDDGDNDHEAL 300 (514)
T ss_pred hcccccccccchhhh
Confidence 444555555444444
No 117
>PRK13401 30S ribosomal protein S18; Provisional
Probab=43.07 E-value=35 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=27.8
Q ss_pred eEccCCCCCCCCcccccCchHHhhhccccC---c-----hhhhhHHHHHHHHHH
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHAKTKG---S-----KRVKLHRELAELLDE 297 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA~gvG---a-----k~kalHrALa~lLe~ 297 (621)
=.||||..+-.-+| |+++.-|-+--+..| . --...||.|++-++.
T Consensus 14 k~c~~~~~~~~~iD-YKnv~lL~~Fis~~GkIlpRR~TGl~~k~QR~l~~AIKr 66 (82)
T PRK13401 14 KKNLLDSLGIESVD-YKDTALLRTFISDRGKIRSRRVTGLTVQQQRQVATAIKN 66 (82)
T ss_pred CCCCcccCCCCcCC-ccCHHHHHHhcCCCccCcCcccCCcCHHHHHHHHHHHHH
Confidence 35999987655679 996665544444444 1 223566777666653
No 118
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.04 E-value=7.4e+02 Score=31.55 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=24.6
Q ss_pred cCceeecCCCCeeEccCCCCCCCCcccccCchHHhhhccc-cCchhhhhHHHHHHHHHH
Q 007021 240 LTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKT-KGSKRVKLHRELAELLDE 297 (621)
Q Consensus 240 g~~kvkn~~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g-vGak~kalHrALa~lLe~ 297 (621)
|++.-+.- ..|-|-.-- .|+ |. +=++-=.| -|+-.-|.--|||.-||-
T Consensus 40 G~I~sI~L--~NFMCHsnL----~Ie-Fg---~~vNfI~G~NGSGKSAIltAl~lglG~ 88 (1074)
T KOG0250|consen 40 GKIESIHL--TNFMCHSNL----LIE-FG---PRVNFIVGNNGSGKSAILTALTLGLGG 88 (1074)
T ss_pred ceEEEEEE--eeecccccc----eec-cC---CCceEeecCCCCcHHHHHHHHHHhhcc
Confidence 87766554 667776543 334 22 22332222 135455566667766663
No 119
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=42.97 E-value=5.5e+02 Score=29.20 Aligned_cols=56 Identities=9% Similarity=0.114 Sum_probs=34.8
Q ss_pred CCCcccccChHHHHHHhh---ccCc-ceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhc
Q 007021 345 ENDKWTGMGNQELLEYFI---LYAA-VRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQ 406 (621)
Q Consensus 345 ddgr~~G~s~~eL~d~ls---gF~p-~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhFe~q 406 (621)
.||-++.-.+..|...+. .|++ .|..-++-.+|+.||. +--=|...++|-+||...
T Consensus 43 PDGsFlVRdAstm~GdYTLtl~k~g~~KLikI~h~DgKyGF~------d~ltf~SVVelIn~yr~~ 102 (464)
T KOG4637|consen 43 PDGSFLVRDASTMQGDYTLTLRKGGNNKLIKIVHRDGKYGFS------DPLTFNSVVELINHYRNE 102 (464)
T ss_pred CCCcEEeeccccCCCceEEEEecCCccceeeeEEecCccCCC------CchhhHHHHHHHHHHhhh
Confidence 356666555555444433 4444 3444455578888763 556688889999999744
No 120
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=42.96 E-value=11 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.718 Sum_probs=15.1
Q ss_pred eEccCCCCCCCCcccccCchHHhhhc
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
|.||.|+. - |.....|.+|-
T Consensus 1 y~C~~C~~-----~-f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGK-----S-FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTE-----E-ESSHHHHHHHH
T ss_pred CCCCCCCC-----c-cCCHHHHHHHH
Confidence 78999963 2 66677888883
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.50 E-value=1.5e+02 Score=30.21 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=11.6
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
+...+|+.++.+....+..+.+|+..|
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 122
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=41.25 E-value=21 Score=29.29 Aligned_cols=15 Identities=40% Similarity=0.778 Sum_probs=9.8
Q ss_pred eeecCCCCeeEccCCC
Q 007021 243 EEINEPARQWHCPACQ 258 (621)
Q Consensus 243 kvkn~~~~tf~CP~C~ 258 (621)
++... .-+|+||+|+
T Consensus 37 ~~~~~-~i~y~C~~Cg 51 (54)
T PF10058_consen 37 KEEFE-EIQYRCPYCG 51 (54)
T ss_pred cccCC-ceEEEcCCCC
Confidence 34444 4588888885
No 123
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.15 E-value=2.4e+02 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHHHHH
Q 007021 544 YKLRAEEIAKFITVQDKEMEEFVAARDRL 572 (621)
Q Consensus 544 ~r~~~E~i~~f~~~q~kem~~f~~er~kl 572 (621)
.+.+.+++...+.-..-|.++++.||+-+
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~y 166 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAY 166 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666666666888999887643
No 124
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=41.14 E-value=40 Score=29.82 Aligned_cols=45 Identities=27% Similarity=0.487 Sum_probs=26.5
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhcc-ccC---c-----hhhhhHHHHHHHHH
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK-TKG---S-----KRVKLHRELAELLD 296 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~-gvG---a-----k~kalHrALa~lLe 296 (621)
+.-.||||..+-..+| |+|+. ||++=. ..| . --...||.|++-++
T Consensus 13 r~k~c~~c~~~~~~iD-YKnv~-lL~~Fis~~GkIlprriTG~~~k~Qr~l~~aIk 66 (79)
T PRK00391 13 RKKVCRFCAEKIEYID-YKDVE-LLKKFISERGKILPRRITGTSAKHQRQLATAIK 66 (79)
T ss_pred CCCCCcccCCCCCcCC-ccCHH-HHHHhcCCCceEcCcccCCcCHHHHHHHHHHHH
Confidence 4456999987755589 89665 555533 334 1 12355666665554
No 125
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=40.51 E-value=9.2 Score=45.87 Aligned_cols=6 Identities=0% Similarity=-0.202 Sum_probs=0.0
Q ss_pred HHhccc
Q 007021 235 ESLESL 240 (621)
Q Consensus 235 e~Lksg 240 (621)
..++.|
T Consensus 716 TLVNqG 721 (787)
T PF03115_consen 716 TLVNQG 721 (787)
T ss_dssp ------
T ss_pred HHHHcC
Confidence 344444
No 126
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=40.17 E-value=6.3 Score=35.02 Aligned_cols=11 Identities=45% Similarity=0.857 Sum_probs=0.4
Q ss_pred hhhhhhHHHHH
Q 007021 223 TRKKSRWFKKF 233 (621)
Q Consensus 223 ~~k~~kwf~K~ 233 (621)
.+||..||--+
T Consensus 61 ~rkKrrwlwLl 71 (81)
T PF14812_consen 61 PRKKRRWLWLL 71 (81)
T ss_dssp ----------T
T ss_pred ccccchhHHHH
Confidence 45667776433
No 127
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=39.90 E-value=3.2e+02 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHhhcC
Q 007021 594 LEKGFDAELTQLMEKYST 611 (621)
Q Consensus 594 leke~~~~l~~lm~k~~~ 611 (621)
+-.+|+..|..||.+||-
T Consensus 90 ~R~~fe~qLE~lm~qHKd 107 (134)
T PF15233_consen 90 LRLDFEEQLEDLMGQHKD 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667888999999999874
No 128
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.72 E-value=1.5e+02 Score=24.25 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007021 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (621)
Q Consensus 486 e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~ 526 (621)
..+..++++||..+..+......+..++..|...+.....+
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888888888888888887777777777665544433
No 129
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=39.71 E-value=4.3e+02 Score=27.01 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
++..+..|..++..-...+.+.+.+|.++..+|..+..+....-.|..
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e 137 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAE 137 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777777777766666664
No 130
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.70 E-value=4.4e+02 Score=30.40 Aligned_cols=15 Identities=27% Similarity=-0.013 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhhh
Q 007021 564 EFVAARDRLIKFHGE 578 (621)
Q Consensus 564 ~f~~er~kl~~~~~~ 578 (621)
.+++-|..|+.....
T Consensus 340 ~LE~lrlql~~eq~l 354 (502)
T KOG0982|consen 340 LLEALRLQLICEQKL 354 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666665555
No 131
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.99 E-value=4.5e+02 Score=26.99 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=8.2
Q ss_pred CCChhHHHHHHHHHhhh
Q 007021 538 PKNTEDYKLRAEEIAKF 554 (621)
Q Consensus 538 ~s~~e~~r~~~E~i~~f 554 (621)
|-..++++.|++.+...
T Consensus 123 Pf~~~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 123 PFLLEERQERLARLRAM 139 (251)
T ss_pred CCChHHHHHHHHHHHHh
Confidence 44455555555544433
No 132
>PRK12704 phosphodiesterase; Provisional
Probab=38.77 E-value=6.8e+02 Score=29.02 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=19.9
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007021 485 VVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEV 531 (621)
Q Consensus 485 Ie~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~ 531 (621)
++.+.+.|...|..+......|.+..++.+.+...+...+.+...++
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l 144 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444333333
No 133
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=38.69 E-value=19 Score=37.80 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhccccC
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKG 281 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~gvG 281 (621)
.+-|+|.||+- . |.+--+|+.|--||.
T Consensus 237 ~eh~YC~fCG~-----~-y~~~edl~ehCPGvn 263 (268)
T KOG1994|consen 237 SEHYYCFFCGI-----K-YKDEEDLYEHCPGVN 263 (268)
T ss_pred ccceEEEEecc-----c-cCCHHHHHHhCCCCC
Confidence 58999999974 3 888999999988764
No 134
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.64 E-value=9e+02 Score=31.89 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=11.2
Q ss_pred eCCCccchHHHHHHHHHHhhc
Q 007021 386 FESSAGGYLEAERLHKHFAEQ 406 (621)
Q Consensus 386 F~kdwsGf~nA~rLekhFe~q 406 (621)
|..+| .+.|...-..|+.-
T Consensus 270 ~aad~--~r~~eERR~liEEA 288 (1486)
T PRK04863 270 VAADY--MRHANERRVHLEEA 288 (1486)
T ss_pred hHHHH--hhCHHHHHHHHHHH
Confidence 55555 56666666666654
No 135
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.62 E-value=5.7e+02 Score=29.44 Aligned_cols=41 Identities=12% Similarity=0.006 Sum_probs=23.3
Q ss_pred cHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHH
Q 007021 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIV 502 (621)
Q Consensus 459 SisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~ 502 (621)
.-.|....-+. +.+.+|.-+.+.+++-.+.++.||+..-.+
T Consensus 136 lC~eC~d~l~~---~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~ 176 (447)
T KOG2751|consen 136 LCEECMDVLLN---KLDKEVEDAEDEVDTYKACLQRLEQQNQDV 176 (447)
T ss_pred hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 33444444444 556666666666666666666666654443
No 136
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=38.58 E-value=5e+02 Score=32.79 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLR 507 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~ 507 (621)
-+..+.++++.-.....++..+|..++..|+
T Consensus 270 ~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~ 300 (1072)
T KOG0979|consen 270 EIKPIEDKKEELESEKKETRSKISQKQRELN 300 (1072)
T ss_pred hhhhhhhhhhhHHhHHHhHHHHHHHHHHHHH
Confidence 3333333333333334444444444444333
No 137
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=38.53 E-value=3.4e+02 Score=34.69 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 485 VVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 485 Ie~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
|+.-.++++.++.++.+.+.....+.+|.+.|..
T Consensus 930 i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e 963 (1293)
T KOG0996|consen 930 IKTSDRNIAKAQKKLSELEREIEDTEKELDDLTE 963 (1293)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444433
No 138
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=38.30 E-value=28 Score=41.27 Aligned_cols=9 Identities=22% Similarity=0.771 Sum_probs=6.8
Q ss_pred CCCCCcccc
Q 007021 148 LEHGWNWQS 156 (621)
Q Consensus 148 ~~~g~~w~~ 156 (621)
+.+||+...
T Consensus 916 edGgW~fL~ 924 (1001)
T COG5406 916 EDGGWSFLM 924 (1001)
T ss_pred hcCcceeee
Confidence 578898765
No 139
>smart00017 OSTEO Osteopontin. Osteopontin is an acidic phosphorylated glycoprotein of about 40 Kd which is abundant in the mineral matrix of bones and which binds tightly to hydroxyapatite [1,2,3]. It is suggested that osteopontin might function as a cell attachment factor and could play a key role in the adhesion of osteoclasts to the mineral matrix of bone
Probab=38.00 E-value=19 Score=38.04 Aligned_cols=36 Identities=19% Similarity=0.007 Sum_probs=17.1
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhccccCchhhhhHHH
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRE 290 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~gvGak~kalHrA 290 (621)
.-.+--||-|.+- -|-|--+ .=|||..+|-+.+|+-
T Consensus 120 ~~~vfTP~vpt~d----~~dGRGD--SvaYglRsKsk~f~~s 155 (287)
T smart00017 120 ATDVFTPFVPTVD----TNDGRGD--SVAYGLRSKSKKFRVS 155 (287)
T ss_pred ccceeccccccCC----CCCCCcc--cceehhhhcccccccc
Confidence 4555677777631 1211111 1245555566666654
No 140
>PLN03121 nucleic acid binding protein; Provisional
Probab=37.66 E-value=63 Score=34.05 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=41.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL 399 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rL 399 (621)
|++.|-|++..- +-..|++.|+.|+.+.-..+....+..|++.|.|..- .+...|+.|
T Consensus 6 ~TV~V~NLS~~t---------TE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~-~aaetAllL 63 (243)
T PLN03121 6 YTAEVTNLSPKA---------TEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDA-YALETAVLL 63 (243)
T ss_pred eEEEEecCCCCC---------CHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCH-HHHHHHHhc
Confidence 788999986532 5678999999999876444444456678999999753 334555544
No 141
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=37.60 E-value=64 Score=33.54 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=35.9
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
+.|-|+|.. .+..+|++.|+.|+++ .|+++..+. | ++|++.|+|...
T Consensus 6 l~V~nLp~~---------~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 6 LIVNYLPQT---------MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEeCCCCC---------CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 567787643 3578899999999997 477777653 4 589999999764
No 142
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.30 E-value=26 Score=36.21 Aligned_cols=7 Identities=29% Similarity=0.610 Sum_probs=2.7
Q ss_pred Cchhhhh
Q 007021 213 DSDTSQK 219 (621)
Q Consensus 213 Dsd~se~ 219 (621)
|.++.+.
T Consensus 72 ~e~e~e~ 78 (240)
T PF05764_consen 72 DEEEGEK 78 (240)
T ss_pred ccchhhh
Confidence 3333433
No 143
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=37.13 E-value=3e+02 Score=30.45 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCC
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIAN 537 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~ 537 (621)
|.++..|-.+....+..|.+++++|++.+..+..+..+.- ++.+++++.+.+|..-...
T Consensus 265 N~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~----~IseeLe~vK~emeerg~~ 323 (359)
T PF10498_consen 265 NNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELA----EISEELEQVKQEMEERGSS 323 (359)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC
Confidence 5566666666777778888888888887777666665543 3456777777776555433
No 144
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=37.05 E-value=6.7e+02 Score=30.16 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
+.+.+.....+|+....++.+....|....++++.|....+
T Consensus 180 ~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 180 LESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 34444444455555556666666666666666666665544
No 145
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=36.84 E-value=2e+02 Score=27.99 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 485 VVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 485 Ie~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
|+.-+..+..|-...+....-|.-+..|++.|.+-.
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555554433
No 146
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=36.72 E-value=28 Score=33.49 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=37.3
Q ss_pred HhHHHHHHH------HHHHHHhhhhhHHHHHHHHHHHHHH------------------hhhhhHHHHHHHHHhhcC
Q 007021 560 KEMEEFVAA------RDRLIKFHGEKMDAMRRRHWEEEVE------------------LEKGFDAELTQLMEKYST 611 (621)
Q Consensus 560 kem~~f~~e------r~kl~~~~~~~~a~~k~~~~~ee~~------------------leke~~~~l~~lm~k~~~ 611 (621)
|+||+|+.+ +.|+-..+-+-+|+...+-||++|. .-.|=|+.|..|=+.|..
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Ge 76 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGE 76 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHH
Confidence 567776655 7888888888899999999999983 223446667777666543
No 147
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=36.16 E-value=2.4e+02 Score=27.32 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=23.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
....++.++...+...+...+.-+..+++++.+|++++
T Consensus 54 ~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 54 EAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHH
Confidence 34445555555555555555666666777777777666
No 148
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=7.6e+02 Score=28.77 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhh
Q 007021 541 TEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHG 577 (621)
Q Consensus 541 ~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~ 577 (621)
...+-+|..+|.+.|-=|+-||-+.-.++..|.|.-.
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888999999999999988888877776544
No 149
>smart00360 RRM RNA recognition motif.
Probab=35.87 E-value=65 Score=23.83 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred cChHHHHHHhhccCcc-eeeeccCC--CCCcceEEEEeCC
Q 007021 352 MGNQELLEYFILYAAV-RARHSYGP--QGHRGMSVLIFES 388 (621)
Q Consensus 352 ~s~~eL~d~lsgF~p~-kV~~l~g~--~GH~G~aVV~F~k 388 (621)
.+...|++.|..|+++ .++....+ .-++|+++|.|..
T Consensus 8 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~ 47 (71)
T smart00360 8 VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFES 47 (71)
T ss_pred cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCC
Confidence 4678899999999976 45555544 3468999999964
No 150
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.30 E-value=5.5e+02 Score=31.19 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=5.0
Q ss_pred EEEEeCCCccc
Q 007021 382 SVLIFESSAGG 392 (621)
Q Consensus 382 aVV~F~kdwsG 392 (621)
+||.|.-=.+|
T Consensus 404 sLvLlDE~g~G 414 (771)
T TIGR01069 404 SLVLFDELGAG 414 (771)
T ss_pred cEEEecCCCCC
Confidence 45554444443
No 151
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=34.32 E-value=3.1e+02 Score=33.62 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=35.3
Q ss_pred ccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Q 007021 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSE 504 (621)
Q Consensus 458 KSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~ 504 (621)
||++.|..|-.= +.+|+++-|..-+.+-.+.+.+++++.-+-++
T Consensus 866 k~vd~i~kel~L---p~~Q~~all~k~~kk~~~~~~~v~~~~ie~~l 909 (1011)
T KOG2036|consen 866 KSVDAIEKELNL---PSNQLLALLTKAMKKLSKYFDEVEEKAIEETL 909 (1011)
T ss_pred CCHHHHHHHhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566667666666 78999999999999999999999988776554
No 152
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=34.24 E-value=1.8e+02 Score=32.39 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=73.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHH----------hhHHH-------HHhhc------C-CCCChhHHHH
Q 007021 492 SKALEATFSIVSEKLRETMEENRIVKQRT-KMQHE----------QNKEE-------VKQSI------A-NPKNTEDYKL 546 (621)
Q Consensus 492 lqeLE~k~ne~s~sL~r~mEE~d~L~~r~-k~~h~----------~~~ee-------~~q~~------~-~~s~~e~~r~ 546 (621)
+.-+|.=++-+++-.+||+|.+..-.+|+ |-.+. +...| ++++. . .-.---++|+
T Consensus 53 mry~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER~VqeAREh~YdLR~LEnYhfiDEhGKDQGINIR~ 132 (499)
T KOG2057|consen 53 MRYMEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSERFVQEAREHAYDLRRLENYHFIDEHGKDQGINIRH 132 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhhhCccccccHHH
Confidence 33477788899999999999998888887 32211 11222 22221 0 0111125788
Q ss_pred HHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHH-----------------HHHHHHHHHHhhhh---hHHHHHHHH
Q 007021 547 RAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAM-----------------RRRHWEEEVELEKG---FDAELTQLM 606 (621)
Q Consensus 547 ~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~-----------------k~~~~~ee~~leke---~~~~l~~lm 606 (621)
++.+|..|.. |. +-|.+||.|--+.+.+|..-. -++-|.||-.-|+- |-.-|-.|=
T Consensus 133 kVKeilEfan--DD--d~Lq~ERkKAkkddKdKY~G~~qd~mggf~~SekydpepkS~wDeeWDKe~Saf~fSdklgel~ 208 (499)
T KOG2057|consen 133 KVKEILEFAN--DD--DLLQAERKKAKKDDKDKYRGFDQDDMGGFGSSEKYDPEPKSGWDEEWDKEDSAFFFSDKLGELD 208 (499)
T ss_pred HHHHHHHHhc--cH--HHHHHHHHhhccccchhccccchhhccccccccccCCCccccccccccccccccchhhhhhhhh
Confidence 8888888753 33 346788988888766654321 24568888777775 566677777
Q ss_pred HhhcCC
Q 007021 607 EKYSTH 612 (621)
Q Consensus 607 ~k~~~~ 612 (621)
+||+..
T Consensus 209 DkigSk 214 (499)
T KOG2057|consen 209 DKIGSK 214 (499)
T ss_pred hhhcCe
Confidence 777643
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=34.01 E-value=4.6e+02 Score=30.39 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=8.9
Q ss_pred CCeeEccCCCCC
Q 007021 249 ARQWHCPACQGG 260 (621)
Q Consensus 249 ~~tf~CP~C~gk 260 (621)
...=.||+|-.+
T Consensus 173 tELPTCpVCLER 184 (493)
T KOG0804|consen 173 TELPTCPVCLER 184 (493)
T ss_pred ccCCCcchhHhh
Confidence 345579999875
No 154
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.93 E-value=3e+02 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=25.3
Q ss_pred hhcchhhhHHHHHH-HHHHHHHHhHHHHHHHH
Q 007021 469 RQMSEDNQQLIYLK-NRVVKEQRHSKALEATF 499 (621)
Q Consensus 469 R~m~k~nklv~~L~-nqIe~knk~lqeLE~k~ 499 (621)
|+|..+|+.|+||+ ++++++.+.++.||+.-
T Consensus 470 r~~kdqnkkvaNlkHk~q~Ekkk~aq~lee~r 501 (654)
T KOG4809|consen 470 RHMKDQNKKVANLKHKQQLEKKKNAQLLEEVR 501 (654)
T ss_pred chhhhhhhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999999 78888888888887643
No 155
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.82 E-value=8e+02 Score=28.41 Aligned_cols=40 Identities=5% Similarity=-0.032 Sum_probs=15.5
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 486 e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
+.+.+.|..-|..+......|....++.+.+.+.....+.
T Consensus 93 ekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~ 132 (514)
T TIGR03319 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIA 132 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444433333333
No 156
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.80 E-value=5.5e+02 Score=26.49 Aligned_cols=65 Identities=26% Similarity=0.508 Sum_probs=29.0
Q ss_pred hhHHHHHHHHH-hhhhhhhhH--hHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHhhh-hhHHHHHHH
Q 007021 541 TEDYKLRAEEI-AKFITVQDK--EMEEFVAARDRLIKFHGEKMDAMR-----RRHWEEEVELEK-GFDAELTQL 605 (621)
Q Consensus 541 ~e~~r~~~E~i-~~f~~~q~k--em~~f~~er~kl~~~~~~~~a~~k-----~~~~~ee~~lek-e~~~~l~~l 605 (621)
++....+.+++ .+.+.+|.+ +.+.+...|+.++-.--...-.++ -+---+||.+|+ .|++-|.+.
T Consensus 118 ~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 118 RDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555 455555554 344444444444433333332222 223345666665 344444443
No 157
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.78 E-value=1.2e+02 Score=29.32 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred ccccccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHH---HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 448 HGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKE---QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQH 524 (621)
Q Consensus 448 iGe~rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~k---nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h 524 (621)
.|++.|..-.|....++.++.=.+..-+++..|+.+|-... ...+.+|...+.++...|..+-.+...|.
T Consensus 27 ~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~------- 99 (169)
T PF07106_consen 27 HNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE------- 99 (169)
T ss_pred HhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred HhhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHH--------HHHHHHHhhhhhHHHHHHH
Q 007021 525 EQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVA--------ARDRLIKFHGEKMDAMRRR 586 (621)
Q Consensus 525 ~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~--------er~kl~~~~~~~~a~~k~~ 586 (621)
.|++.+...++ +++++...+++..=++--...++.|.. +++++.+.+..-....++|
T Consensus 100 ----~eL~~L~~~~t-~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 100 ----AELASLSSEPT-NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred ----HHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
No 158
>COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]
Probab=33.38 E-value=36 Score=30.06 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=19.9
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhccc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g 279 (621)
+.=.||||..+-..+| |+|+ +||.+-.+
T Consensus 14 rrk~c~~~~~~~~~iD-YKd~-~~L~rfis 41 (75)
T COG0238 14 RRKVCRFTAEGIEEID-YKDV-ELLKRFIS 41 (75)
T ss_pred cccccccccccCCccC-ccCH-HHHHHHhc
Confidence 4457999998656789 8855 56666554
No 159
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.21 E-value=5.5e+02 Score=26.28 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
+..|.+.|+.....+..++.++......+..+..+...|.+|+.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666555555553
No 160
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=33.19 E-value=3.2e+02 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 488 EQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 488 knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
-.+-++++......+...+...+.|...+...++...+
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~ 61 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLE 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555555555544444
No 161
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.17 E-value=4.9e+02 Score=25.81 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007021 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKE 529 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~e 529 (621)
..|+.+|...+..+++|+.+..+....|..+..++..|..+++...++.++
T Consensus 91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777778888888888888888888888888777665555444
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=6.9e+02 Score=30.01 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Q 007021 544 YKLRAEEIAKFITVQDKEMEEFVAARDRLI 573 (621)
Q Consensus 544 ~r~~~E~i~~f~~~q~kem~~f~~er~kl~ 573 (621)
+..+.+.+.+-+.-+.+++++|..+=.+|.
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666667777766644444
No 163
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.96 E-value=1.7e+02 Score=26.41 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQ 533 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q 533 (621)
+....|...+..++.-|..+.+-++.|+-|.++.++.|.++.++
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e 69 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLE 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888899999999999999999999988877433
No 164
>PHA03249 DNA packaging tegument protein UL25; Provisional
Probab=32.50 E-value=7.4e+02 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=19.2
Q ss_pred cccccccccccccccCCCCCCCC--CCeeEEEe
Q 007021 29 SNSQVDHLSGSVADISLDSAQDD--GGWEVYVR 59 (621)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~--g~w~~~~~ 59 (621)
+....|.|-.--|+..--|++.| ..+|+|+-
T Consensus 35 ~r~~~~~ld~meagl~~~s~~sd~~ssfe~v~e 67 (653)
T PHA03249 35 PRAPTEDLDRMEAGLSSYSSSSDNKSSFEVVSE 67 (653)
T ss_pred CCCchhhhHHHhcccccccccCCCccceeeeec
Confidence 34456677766666666666655 45788743
No 165
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.00 E-value=2.8e+02 Score=27.17 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQ 533 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q 533 (621)
-.....-|..+|-.|+..|+.|-.+-+-...+++.+-.|+..|+.+.-+++.+...|+..
T Consensus 59 f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 59 FYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788899999999999999999999999999999999999998888877776554
No 166
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.96 E-value=3.8e+02 Score=24.08 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVK 517 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~ 517 (621)
+...++..+++....+++-||..+..++.+...+...-.-|.
T Consensus 7 ~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~ 48 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLE 48 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888887776666555444443
No 167
>PRK13400 30S ribosomal protein S18; Provisional
Probab=31.91 E-value=59 Score=31.91 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.3
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
+.-.||||..+...+| |+|..-|-+--+
T Consensus 21 RrK~C~~c~~~~~~ID-YKNv~lL~~FIS 48 (147)
T PRK13400 21 KRKICSFCAEKVSRID-YKDSAKLARYIS 48 (147)
T ss_pred CCCCCCccCCCCCccC-CcCHHHHHHhcC
Confidence 3456999997777789 996655544433
No 168
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=31.89 E-value=8.8e+02 Score=28.30 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhc
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSI 535 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~ 535 (621)
++++|-+.++.-.- ++.++--.|+..-+.-..+...||.. --|+-..++.....+.++++.+..++++--+.
T Consensus 166 ~~~q~~d~~e~~~~---kdSQlkvrlqe~~~ll~~Rve~le~~-----Sal~~lq~~L~la~~~~~~~~e~~i~~~~~f~ 237 (554)
T KOG4677|consen 166 KGEQYRDYSEDWSP---KDSQLKVRLQEVRRLLKGRVESLERF-----SALRSLQDKLQLAEEAVSMHDENVITAVLIFL 237 (554)
T ss_pred hhhhHhhHhhhccc---chhhHHHHHHHHHHHHHhhhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q ss_pred CCCCChhHHHH-HHHHHhhhhhhhhHhHHHHHHH---------------------HHHHHHhhhhhHHHHHHHHHHHHHH
Q 007021 536 ANPKNTEDYKL-RAEEIAKFITVQDKEMEEFVAA---------------------RDRLIKFHGEKMDAMRRRHWEEEVE 593 (621)
Q Consensus 536 ~~~s~~e~~r~-~~E~i~~f~~~q~kem~~f~~e---------------------r~kl~~~~~~~~a~~k~~~~~ee~~ 593 (621)
..--..|..++ .+|.|+--.--=.-...+|++- |+-+|-..++|.-++.++. ||+-
T Consensus 238 ~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~--ee~r 315 (554)
T KOG4677|consen 238 KRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEF--EETR 315 (554)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHH--HHHH
Q ss_pred hhhhh-HHHHHHHHHhh
Q 007021 594 LEKGF-DAELTQLMEKY 609 (621)
Q Consensus 594 leke~-~~~l~~lm~k~ 609 (621)
.|++| -+++..+|..|
T Consensus 316 ve~~~s~ed~~~~q~q~ 332 (554)
T KOG4677|consen 316 VELPFSAEDSAHIQDQY 332 (554)
T ss_pred hcccccHHHHHHHHHHH
No 169
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=31.72 E-value=26 Score=43.19 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=18.4
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhhHhHHHH
Q 007021 536 ANPKNTEDYKLRAEEIAKFITVQDKEMEEF 565 (621)
Q Consensus 536 ~~~s~~e~~r~~~E~i~~f~~~q~kem~~f 565 (621)
.++...+...--.++|...|.-.|+.|-++
T Consensus 683 ~~~~~~~~~e~vL~el~~Lisesdlhvt~~ 712 (1233)
T KOG1824|consen 683 SDSIPAELLEAVLVELPPLISESDLHVTQL 712 (1233)
T ss_pred hccccHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 455555555555667777776666666554
No 170
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=21 Score=39.82 Aligned_cols=10 Identities=30% Similarity=0.949 Sum_probs=8.7
Q ss_pred eeEccCCCCC
Q 007021 251 QWHCPACQGG 260 (621)
Q Consensus 251 tf~CP~C~gk 260 (621)
+|.|||||..
T Consensus 374 sfKCPYCP~e 383 (394)
T KOG2817|consen 374 SFKCPYCPVE 383 (394)
T ss_pred eeeCCCCCcc
Confidence 6999999964
No 171
>PRK14161 heat shock protein GrpE; Provisional
Probab=31.63 E-value=2.4e+02 Score=28.31 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
+.+.|..-++.-+..+++|+..+.+...++.|+.-|.+-+++|+....++...-
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~ 66 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY 66 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666677777888888888899999999999999999997766654443
No 172
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=31.54 E-value=2.8e+02 Score=27.61 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
-..-|...|+.--+.....-++.-..+..+..+|..++.|.|+|+.|.
T Consensus 100 a~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~Lr~kL 147 (152)
T PF15186_consen 100 AAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLLRWKL 147 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555666667777788888999999999999875
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.35 E-value=6.9e+02 Score=26.86 Aligned_cols=9 Identities=22% Similarity=0.269 Sum_probs=3.3
Q ss_pred HHHHhhHHH
Q 007021 522 MQHEQNKEE 530 (621)
Q Consensus 522 ~~h~~~~ee 530 (621)
..|....+|
T Consensus 184 ~~~~~L~~e 192 (325)
T PF08317_consen 184 ERKAELEEE 192 (325)
T ss_pred HHHHHHHHH
Confidence 333333333
No 174
>PHA02047 phage lambda Rz1-like protein
Probab=31.32 E-value=3.1e+02 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=35.2
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 007021 463 MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (621)
Q Consensus 463 mv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE 512 (621)
+..+.++ ....+|..+.-+|..-+++.++|+.+-+..+..+...+++
T Consensus 31 ~~h~~a~---~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~ 77 (101)
T PHA02047 31 IAHEEAK---RQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQ 77 (101)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555 5566788888888888888888888877777777777765
No 175
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=31.24 E-value=6.9e+02 Score=31.27 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
-+|.+++|......+.+|...-.++..+.+.+.+.|.++++|
T Consensus 994 aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQe 1035 (1424)
T KOG4572|consen 994 ARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE 1035 (1424)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356666666666666677766677777777777777776665
No 176
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.14 E-value=3.5e+02 Score=30.94 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=82.3
Q ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHH------HHHH---
Q 007021 463 MVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS--------EKLRETMEENRIVKQRTK------MQHE--- 525 (621)
Q Consensus 463 mv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s--------~sL~r~mEE~d~L~~r~k------~~h~--- 525 (621)
++....| -.-++|......|..-.+.|+.|+.-+.... .-|+++.||.+.|..-.. +-++
T Consensus 240 V~~RgVR---p~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~ 316 (426)
T smart00806 240 VAQRGVR---PSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAE 316 (426)
T ss_pred HHHcCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 5578999999999999999999998877554 568888888887775442 1111
Q ss_pred hhHHHHHhh----cCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHH-------HHHHhhhhhHHHHHH--HHHHHHH
Q 007021 526 QNKEEVKQS----IANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARD-------RLIKFHGEKMDAMRR--RHWEEEV 592 (621)
Q Consensus 526 ~~~ee~~q~----~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~-------kl~~~~~~~~a~~k~--~~~~ee~ 592 (621)
+.+.-|+|+ ..+++.. | .+++.+-+-+=+.+..-|+ .|-=+||....|+-+ +-||.|+
T Consensus 317 eTf~lVeq~~~eQ~k~~~~~---~------~~~~~l~i~~pg~~~~~kd~VL~EV~aL~PdHEsRLeAIErAEklR~kEl 387 (426)
T smart00806 317 ETFDLVEQCCEEQEKGPSKN---R------NKPVSLPVPTPGTFNDLKDQVLMEVRALKPDHESRLEAIERAEKLREKEL 387 (426)
T ss_pred HHHHHHHHHHHHHhhCcccc---c------CCCccCCCCCCCChhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHH
Confidence 111112222 1112110 0 0111111111112222233 444567777777754 4677777
Q ss_pred Hh--hhhhHHHHHHHHHhhcCCccc
Q 007021 593 EL--EKGFDAELTQLMEKYSTHITE 615 (621)
Q Consensus 593 ~l--eke~~~~l~~lm~k~~~~~~~ 615 (621)
++ .-+|.+||...++.-+...+.
T Consensus 388 e~r~~d~Fq~ELg~FVe~~kLKksG 412 (426)
T smart00806 388 EYRRVDEFEKELGNFVENGKLKKSG 412 (426)
T ss_pred HhccccHHHHHHHHHhccCCcccCc
Confidence 75 468999999999987776554
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.07 E-value=7.2e+02 Score=27.01 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVK 487 (621)
Q Consensus 475 nklv~~L~nqIe~ 487 (621)
.+++..|+..+..
T Consensus 139 ~kllegLk~~L~~ 151 (312)
T smart00787 139 MKLLEGLKEGLDE 151 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555543
No 178
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.91 E-value=1.2e+03 Score=29.40 Aligned_cols=74 Identities=20% Similarity=0.118 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH--hhHHHHHhhcCCCCChhHHHH---HHHHHhhhhhhhhHhH----HHHHHHHHH
Q 007021 502 VSEKLRETMEENRIV-KQRTKMQHE--QNKEEVKQSIANPKNTEDYKL---RAEEIAKFITVQDKEM----EEFVAARDR 571 (621)
Q Consensus 502 ~s~sL~r~mEE~d~L-~~r~k~~h~--~~~ee~~q~~~~~s~~e~~r~---~~E~i~~f~~~q~kem----~~f~~er~k 571 (621)
...+++..|.+||.. ..+.+.+|. +.-+|+.|+..-....+-.|. +.|+.--|..+-.|++ .++++.+.-
T Consensus 202 k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~ 281 (1265)
T KOG0976|consen 202 KLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSV 281 (1265)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 334455555 445667776544444443332 3344444555555543 344444444
Q ss_pred HHHh
Q 007021 572 LIKF 575 (621)
Q Consensus 572 l~~~ 575 (621)
|=+.
T Consensus 282 L~~E 285 (1265)
T KOG0976|consen 282 LGDE 285 (1265)
T ss_pred Hhhh
Confidence 4443
No 179
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.84 E-value=9.6e+02 Score=28.39 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
|..|..+++++.+.+..-+++.......|....-|...+..|+
T Consensus 122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~ 164 (546)
T KOG0977|consen 122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRI 164 (546)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 4444444444444443333333333333333333333333333
No 180
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=30.71 E-value=6.2e+02 Score=26.13 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=67.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHH
Q 007021 491 HSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE------QNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEE 564 (621)
Q Consensus 491 ~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~------~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~ 564 (621)
+|+++|..+.+++..|.+++.+-..+..-.+..-. ....+.+..-.+.+.++|-....+-+.+|+.+ +.+
T Consensus 3 ~l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~----l~e 78 (207)
T cd07602 3 NLHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRL----IET 78 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHH----HHH
Confidence 56677777777777777777776666665543332 34444554444455566655566788888765 556
Q ss_pred HHHHHHHHHHhhhhhHHH----HHHHHHHHHHHhhhhhHHH---HHHHHHhh
Q 007021 565 FVAARDRLIKFHGEKMDA----MRRRHWEEEVELEKGFDAE---LTQLMEKY 609 (621)
Q Consensus 565 f~~er~kl~~~~~~~~a~----~k~~~~~ee~~leke~~~~---l~~lm~k~ 609 (621)
+..+|+.|+..-..-+-. ..+....+--+.-|.||-+ +-+.++||
T Consensus 79 i~~~r~~L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~ 130 (207)
T cd07602 79 VEDERDRMLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKH 130 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888776654333 3333333334455556543 33445554
No 181
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=30.70 E-value=7.4e+02 Score=30.40 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=20.3
Q ss_pred HHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhhh
Q 007021 521 KMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFIT 556 (621)
Q Consensus 521 k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~ 556 (621)
++..++.++|+.|-=.-.-+..+++...+.+..|+.
T Consensus 510 ~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~ 545 (762)
T PLN03229 510 MEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 444556666665544444445556666666666664
No 182
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.52 E-value=7.1e+02 Score=26.77 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=33.2
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEA 497 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~ 497 (621)
.|..|||.+..+..+-.. .--.|.+-|...++-+..+...+-.
T Consensus 114 ~k~~dlk~~R~Laseit~---~GA~LydlL~kE~~lr~~R~~a~~r 156 (267)
T PF10234_consen 114 SKIQDLKAARQLASEITQ---RGASLYDLLGKEVELREERQRALAR 156 (267)
T ss_pred hhhhhHHHHHHHHHHHHH---HHHHHHHHHhchHhHHHHHHHHHcC
Confidence 668899998888887777 6667888888888777777766653
No 183
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=30.40 E-value=1.1e+02 Score=29.01 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=39.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
.+.|-|++.. .+...|++.|..|.++. +++...+ .| +.|+++|.|... ..-..|+.
T Consensus 36 ~lfVgnL~~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSWG---------TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 3667888642 36788999999998864 5555554 23 589999999964 55555554
No 184
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=30.36 E-value=5.4e+02 Score=25.36 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
+..+...+..+..++..|..+......++..+..|...+.+
T Consensus 137 ~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~ 177 (236)
T PF09325_consen 137 YQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAER 177 (236)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 33444555555555555555544444445554444444443
No 185
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=30.05 E-value=3.3e+02 Score=29.72 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=17.2
Q ss_pred hhHHHHHhhcCCCCChhHHHHHHHHHh
Q 007021 526 QNKEEVKQSIANPKNTEDYKLRAEEIA 552 (621)
Q Consensus 526 ~~~ee~~q~~~~~s~~e~~r~~~E~i~ 552 (621)
...++++.+.+.--+++|+..+.++|-
T Consensus 54 aVe~~lKssTvGLVtL~Dmk~kqeniV 80 (331)
T KOG2894|consen 54 AVEEELKSSTVGLVTLDDMKAKQENIV 80 (331)
T ss_pred HHHHHHhhcccceEEHHHHHHHHHHHH
Confidence 334456777777777777776666543
No 186
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.03 E-value=4.8e+02 Score=26.64 Aligned_cols=113 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------------------HHHHhhcCCCCChhHHHH
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK-----------------------EEVKQSIANPKNTEDYKL 546 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~-----------------------ee~~q~~~~~s~~e~~r~ 546 (621)
++++++|+...+...+|.++...-..+..-.++.-.-.. .-+.+....-.+.+++|-
T Consensus 1 ~~i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~ 80 (202)
T cd07606 1 KQLQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKE 80 (202)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHH
Q ss_pred HH---------HHHhhhhhhhhHhHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007021 547 RA---------EEIAKFITVQDKEMEEFVAARDRLIKFHGE---KMDAMRRRHWEEEVELEKGFDAELTQL 605 (621)
Q Consensus 547 ~~---------E~i~~f~~~q~kem~~f~~er~kl~~~~~~---~~a~~k~~~~~ee~~leke~~~~l~~l 605 (621)
++ ..+..|++-+.+++.+....=+|....++. |-+.+.+.-=.++|+ |.+++|...
T Consensus 81 ~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~---ea~~~l~~~ 148 (202)
T cd07606 81 VLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILA---AAEEDLGTT 148 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH---HHHHHHHHH
No 187
>PRK14148 heat shock protein GrpE; Provisional
Probab=29.92 E-value=2.3e+02 Score=28.91 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=39.3
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 482 KNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 482 ~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
...++.-+..+++|+..+.+...++.|+.-|.+-+++|+....++.+.-
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~ 87 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKF 87 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777888999999999999999999999999997666654433
No 188
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.66 E-value=1.8e+02 Score=31.00 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHHH------HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007021 481 LKNRV------VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKE 529 (621)
Q Consensus 481 L~nqI------e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~e 529 (621)
|+|+| ..|..++.+||+..-.+++.-+++.-|++.|+..++-.+.+|-|
T Consensus 75 LKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~e 129 (292)
T KOG4005|consen 75 LKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHE 129 (292)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 55665 45677899999999999999999999999999888655554443
No 189
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.37 E-value=1.8e+02 Score=34.16 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=28.9
Q ss_pred hhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 007021 557 VQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWE 589 (621)
Q Consensus 557 ~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ 589 (621)
+-.|..++|.+++.||.-.|-..++.-||..|=
T Consensus 498 lE~k~~~n~~e~~kkl~~~~qr~l~etKkKQWC 530 (588)
T KOG3612|consen 498 LEQKHAENIKEEIKKLAEEHQRALAETKKKQWC 530 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677899999999999999999999999994
No 190
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=28.92 E-value=6.4e+02 Score=25.75 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Q 007021 539 KNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKY 609 (621)
Q Consensus 539 s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~ 609 (621)
...++.+.|.+.|+.-| -.||.-|..+|.+-.+ .+.+.|.+++++..+++-+.|.+...+|
T Consensus 139 ~e~~ev~~r~d~IS~~~---~aE~~~F~~eRv~Dfk-------~~m~~yLe~qI~fyqqI~~kl~~a~~~~ 199 (199)
T cd07626 139 AELEEVKRRTDVISYAL---LAEINHFHRERVRDFK-------SMMRNYLQQQIEFYQKIAAKLEEALAMY 199 (199)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556777888887443 4799999999877654 4566899999999999988888776654
No 191
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=28.57 E-value=1.2e+03 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=12.1
Q ss_pred hhhHHHHHHHHHhhcCCc
Q 007021 596 KGFDAELTQLMEKYSTHI 613 (621)
Q Consensus 596 ke~~~~l~~lm~k~~~~~ 613 (621)
|.-.+++++.+.|-.+-.
T Consensus 369 kr~~aei~Kffqk~~~k~ 386 (811)
T KOG4364|consen 369 KRHEAEIGKFFQKIDNKF 386 (811)
T ss_pred HHHHHHHHhhhccccccc
Confidence 445677888887766654
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.26 E-value=9.9e+02 Score=27.83 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=15.6
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 484 RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 484 qIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
||+-.+++++.+=....++...+..+.-++.++-+|.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~ 384 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKL 384 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 4444444444444444443334444444444444443
No 193
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=28.23 E-value=5e+02 Score=24.95 Aligned_cols=8 Identities=38% Similarity=0.571 Sum_probs=4.9
Q ss_pred ceeeeeec
Q 007021 428 RQLYGFMA 435 (621)
Q Consensus 428 ~~LYGWlA 435 (621)
..-||||-
T Consensus 17 avGY~Y~w 24 (126)
T PF07889_consen 17 AVGYGYMW 24 (126)
T ss_pred HHHheeee
Confidence 45577774
No 194
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.10 E-value=1.4e+03 Score=29.38 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred ccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH------------------HHHHHHHHH
Q 007021 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM------------------EENRIVKQR 519 (621)
Q Consensus 458 KSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m------------------EE~d~L~~r 519 (621)
+++.+...|..+ ...++..+.-+|-.-.+.++..|....++...++++. ||.......
T Consensus 704 ~~l~~~~~El~~----~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~ 779 (1141)
T KOG0018|consen 704 RSLEQNELELQR----TESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEF 779 (1141)
T ss_pred HHHHHHHHHHHH----HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHH
Q ss_pred HHHHHH-hhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhh
Q 007021 520 TKMQHE-QNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGF 598 (621)
Q Consensus 520 ~k~~h~-~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~ 598 (621)
++++++ ++..---......-.-.|.+.|+|.+.++|+--.++++.+...++.+.+.-.+= +.|.++-=++=.+++.|+
T Consensus 780 a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~ 858 (1141)
T KOG0018|consen 780 AKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEI 858 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 007021 599 DA 600 (621)
Q Consensus 599 ~~ 600 (621)
.+
T Consensus 859 ~e 860 (1141)
T KOG0018|consen 859 NE 860 (1141)
T ss_pred HH
No 195
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.09 E-value=9e+02 Score=27.17 Aligned_cols=23 Identities=0% Similarity=0.030 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 007021 478 LIYLKNRVVKEQRHSKALEATFS 500 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~n 500 (621)
+..+..+|+..+.++..++..+.
T Consensus 190 i~~l~~~i~~~~~~i~~~~~~~~ 212 (562)
T PHA02562 190 IDHIQQQIKTYNKNIEEQRKKNG 212 (562)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444444444444444444433
No 196
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=28.06 E-value=28 Score=23.87 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=17.5
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhccc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g 279 (621)
+|.|++|.. . |.+-..|.+|=.+
T Consensus 1 q~~C~~C~k-----~-f~~~~~~~~H~~s 23 (27)
T PF12171_consen 1 QFYCDACDK-----Y-FSSENQLKQHMKS 23 (27)
T ss_dssp -CBBTTTTB-----B-BSSHHHHHCCTTS
T ss_pred CCCcccCCC-----C-cCCHHHHHHHHcc
Confidence 589999962 3 7888899999655
No 197
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.88 E-value=5.3e+02 Score=24.44 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
+-.+|..-+..+..|+..-...+.-|-++|.+++.+..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556667777777777777777877776644
No 198
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.86 E-value=5.1e+02 Score=28.40 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHH
Q 007021 504 EKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAM 583 (621)
Q Consensus 504 ~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~ 583 (621)
.-|.++.|-+.+|--|.. .|.+-++++++++.+ .+.+|+.+.-....|=++.|+|
T Consensus 26 ~~~~k~~e~~qkl~sr~~-~~~ekke~i~r~n~k------------------------~~d~v~~~~~~~~~~~erl~~l 80 (359)
T KOG4398|consen 26 EGLLKTKEKNQKLYSRAQ-RHQEKKEKIQRHNRK------------------------LGDLVEKKTIDLRSHYERLANL 80 (359)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhh------------------------cchHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666554 344556667777653 2344556666777888899999
Q ss_pred HHHHHHH
Q 007021 584 RRRHWEE 590 (621)
Q Consensus 584 k~~~~~e 590 (621)
++.|-+|
T Consensus 81 r~shi~e 87 (359)
T KOG4398|consen 81 RRSHILE 87 (359)
T ss_pred HHHHHHH
Confidence 9888665
No 199
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=27.74 E-value=76 Score=25.73 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=14.4
Q ss_pred hHhHHHHHHHHHHHHHhhhh
Q 007021 559 DKEMEEFVAARDRLIKFHGE 578 (621)
Q Consensus 559 ~kem~~f~~er~kl~~~~~~ 578 (621)
|.++.+|.+.|..|+..||.
T Consensus 25 d~qIaeLe~KR~~Lv~qHP~ 44 (46)
T PF08946_consen 25 DEQIAELEAKRQRLVDQHPR 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 56667788999999999985
No 200
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.68 E-value=1.2e+03 Score=28.46 Aligned_cols=7 Identities=0% Similarity=0.055 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 007021 398 RLHKHFA 404 (621)
Q Consensus 398 rLekhFe 404 (621)
.+-++|.
T Consensus 431 aile~l~ 437 (782)
T PRK00409 431 SILEYLR 437 (782)
T ss_pred HHHHHHH
Confidence 3344554
No 201
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=27.60 E-value=4.5e+02 Score=32.13 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=16.9
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQR 490 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk 490 (621)
++.+..+...+.-+ .-.++|.++..++...++
T Consensus 480 ~~~~~~~~~~~~~~---~l~~llee~~~~~~~~~~ 511 (809)
T KOG0247|consen 480 DLPTFEEQDKNDKE---TLDQLLEELEKRILLRTK 511 (809)
T ss_pred CchhHhhhhhhhHH---HHHHHHHHHHHHHHHHHH
Confidence 45555555555444 455566666555554444
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.00 E-value=5.9e+02 Score=25.58 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
+....+.++++.-++.++.++.+..++...|....
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 203
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=26.81 E-value=6.6e+02 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHH
Q 007021 561 EMEEFVAARDRLIKFHGEKMDAMR 584 (621)
Q Consensus 561 em~~f~~er~kl~~~~~~~~a~~k 584 (621)
+..+|.++=+++...+|+.+..|+
T Consensus 118 ~~~~l~~el~~~~~~Dp~~i~~~~ 141 (188)
T PF03962_consen 118 ELKELKKELEKYSENDPEKIEKLK 141 (188)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 445555555555666666555555
No 204
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=26.77 E-value=1.4e+02 Score=33.37 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=44.6
Q ss_pred eecCCe--EEEeccccccCCCCcccccChHHHHHHhhccCc---ceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHH
Q 007021 328 IVWPPM--VIIMNTRLDKDENDKWTGMGNQELLEYFILYAA---VRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKH 402 (621)
Q Consensus 328 iVWPWm--GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p---~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekh 402 (621)
.++||. +.|-|++.. .+.+.|++.|+.|.. ..++.+-...+.+|+++|+|..--.- ..|+..-++
T Consensus 389 ~~~~ps~~L~v~NLp~~---------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS---------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCCC---------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 467884 556688653 356789999998875 34555444455689999999984333 355554444
Q ss_pred Hhhc
Q 007021 403 FAEQ 406 (621)
Q Consensus 403 Fe~q 406 (621)
+...
T Consensus 459 ~~l~ 462 (481)
T TIGR01649 459 HQLN 462 (481)
T ss_pred CccC
Confidence 4444
No 205
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=26.69 E-value=4.5e+02 Score=23.26 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
+-+|+.++..++.-.+.+..+.....+...++.-...|...+++++-
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~ 49 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVY 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776666666666666667777777777777763
No 206
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=26.67 E-value=3.1e+02 Score=25.40 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=11.9
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVK 517 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~ 517 (621)
+++..|-..+.++...+..++|||-.|+
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455444433
No 207
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.66 E-value=52 Score=25.46 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=8.4
Q ss_pred CeeEccCCCC
Q 007021 250 RQWHCPACQG 259 (621)
Q Consensus 250 ~tf~CP~C~g 259 (621)
..++||+|+.
T Consensus 20 ~~~~Cp~CG~ 29 (46)
T PRK00398 20 TGVRCPYCGY 29 (46)
T ss_pred CceECCCCCC
Confidence 3799999975
No 208
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.57 E-value=1.1e+03 Score=28.04 Aligned_cols=75 Identities=24% Similarity=0.233 Sum_probs=37.0
Q ss_pred hhcCCCCChhHHHHHHH-HHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHh
Q 007021 533 QSIANPKNTEDYKLRAE-EIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQL-MEK 608 (621)
Q Consensus 533 q~~~~~s~~e~~r~~~E-~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~l-m~k 608 (621)
...+.+...-+++.+.. ++. -++..+-..++|+++-.++....-..-.+|-..--+---+|++.+-++|..| |+|
T Consensus 315 KY~~~~~~l~~~~~~~~~el~-~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~ 391 (557)
T COG0497 315 KYGVTIEDLLEYLDKIKEELA-QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEK 391 (557)
T ss_pred HhCCCHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444444444443332 332 2334444566666665555554444323332222222335688888888887 443
No 209
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.44 E-value=1e+03 Score=30.89 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.6
Q ss_pred CeeEcc
Q 007021 250 RQWHCP 255 (621)
Q Consensus 250 ~tf~CP 255 (621)
..|.-|
T Consensus 298 ~~l~FP 303 (1317)
T KOG0612|consen 298 ESLSFP 303 (1317)
T ss_pred hhcCCC
Confidence 344444
No 210
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=26.27 E-value=77 Score=31.31 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=40.0
Q ss_pred ecCCeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccC--CCCC-cceEEEEeCCCccchHHHHH
Q 007021 329 VWPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYG--PQGH-RGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 329 VWPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g--~~GH-~G~aVV~F~kdwsGf~nA~r 398 (621)
|=-|+++|.++--+- ....+.+.|+.|.++|-.+|-- .-|. .|||+|+++. +++|.+
T Consensus 70 VEGwIi~VtgvHeEa---------tEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet----~keAq~ 129 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEA---------TEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYET----LKEAQA 129 (170)
T ss_pred eeeEEEEEeccCcch---------hHHHHHHHHhhcccccceeeccccccccccceeeeehHh----HHHHHH
Confidence 445888888885433 2456789999999999877643 3465 7899999864 455543
No 211
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.88 E-value=4.8e+02 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred cceeeeeeccccccCCCCccccccc-ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Q 007021 427 KRQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEK 505 (621)
Q Consensus 427 k~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~s 505 (621)
+..||--|+.+-++..- .-.. ...-+|-+|...+.+.+. ...+.|..+..+|..-...-..|+.|.......
T Consensus 133 GA~LydlL~kE~~lr~~----R~~a~~r~~e~~~iE~~l~~ai~---~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E 205 (267)
T PF10234_consen 133 GASLYDLLGKEVELREE----RQRALARPLELNEIEKALKEAIK---AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQE 205 (267)
T ss_pred HHHHHHHHhchHhHHHH----HHHHHcCCcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778777777766331 1122 555677777666666666 444455555555554444445555555444444
Q ss_pred HHHH
Q 007021 506 LRET 509 (621)
Q Consensus 506 L~r~ 509 (621)
|+|.
T Consensus 206 LER~ 209 (267)
T PF10234_consen 206 LERN 209 (267)
T ss_pred HHHH
Confidence 4433
No 212
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=25.84 E-value=4.6e+02 Score=25.09 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
|..++......+..|+.-+..+...|.+..+....|...++-...+.+++
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777777777777776666666665
No 213
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.81 E-value=4.8e+02 Score=27.13 Aligned_cols=88 Identities=19% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhH
Q 007021 464 VVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTED 543 (621)
Q Consensus 464 v~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~ 543 (621)
+.+++. +.-..+..|..+|..-......||..+.++...+....++..........++.+...++.+....-..+-+
T Consensus 214 ~~~E~~---~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 214 AKEELK---ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHH---HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHhhh
Q 007021 544 YKLRAE-EIAKF 554 (621)
Q Consensus 544 ~r~~~E-~i~~f 554 (621)
.+...+ +|..|
T Consensus 291 ~K~~Ld~EIatY 302 (312)
T PF00038_consen 291 VKLALDAEIATY 302 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
No 214
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=25.52 E-value=2.8e+02 Score=33.90 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=54.1
Q ss_pred ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHH---------------HHhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 452 KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKE---------------QRHSKALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 452 rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~k---------------nk~lqeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
-+|-++.+.+-.-+.++|++.+....+-+|..+|.+- -+.+-+||..+.++...|+.+-.-.+.|
T Consensus 39 DLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L 118 (829)
T KOG2189|consen 39 DLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEAL 118 (829)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3555888999999999999999999999999998773 4555677777777777776666555555
Q ss_pred HHHHHHHHH
Q 007021 517 KQRTKMQHE 525 (621)
Q Consensus 517 ~~r~k~~h~ 525 (621)
+....+..|
T Consensus 119 ~~n~~eL~E 127 (829)
T KOG2189|consen 119 KANYNELLE 127 (829)
T ss_pred HHHHHHHHH
Confidence 555544433
No 215
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=25.32 E-value=1.2e+03 Score=27.68 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
+++.-+-.++...|-..-.+.+.+...+.-|.+.|||+-+|..
T Consensus 198 ~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLls 240 (596)
T KOG4360|consen 198 QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLS 240 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444555555556666555543
No 216
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=25.20 E-value=5.2e+02 Score=31.34 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
+-.+.+.+|.-++++-+..+..++..|++....|...+
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555556666666666666666666666555554443
No 217
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=25.14 E-value=1e+03 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q 007021 579 KMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 579 ~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~ 610 (621)
.++-+-++-.++.-.-|-.+-++|.-.|.||.
T Consensus 201 EKd~lak~~~e~~~~~e~qlK~ql~lY~aKye 232 (391)
T KOG1850|consen 201 EKDELAKIMLEEMKQVEGQLKEQLALYMAKYE 232 (391)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555666667777774
No 218
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.13 E-value=7.1e+02 Score=24.98 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhcc----hhhhHHHHHHHHHHHHHHhHHHHHHH
Q 007021 460 YHEMVVNQIRQMS----EDNQQLIYLKNRVVKEQRHSKALEAT 498 (621)
Q Consensus 460 isEmv~E~~R~m~----k~nklv~~L~nqIe~knk~lqeLE~k 498 (621)
|+.+-.|-+||++ +++.||..+-+.+...-...+.|-.+
T Consensus 64 y~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred HHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999998 88999999998887766665555443
No 219
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.06 E-value=4.8e+02 Score=31.25 Aligned_cols=23 Identities=9% Similarity=-0.099 Sum_probs=16.4
Q ss_pred eeeeeeccccccCCCCccccccc
Q 007021 429 QLYGFMALKEDLDVFNQHCHGKT 451 (621)
Q Consensus 429 ~LYGWlAradDyd~~d~~siGe~ 451 (621)
.-|-|+.+.+|-...|.+..+-+
T Consensus 46 ~a~~~lt~~qdA~~~~~~~~~p~ 68 (907)
T KOG2264|consen 46 SAPSWLTTLQDALKQNIENLDPY 68 (907)
T ss_pred ccceeeecccccchhcccccCcc
Confidence 56788888888877777654444
No 220
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=25.00 E-value=3.9e+02 Score=26.23 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=42.7
Q ss_pred hhhhHHHHHH---HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007021 473 EDNQQLIYLK---NRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (621)
Q Consensus 473 k~nklv~~L~---nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~ 527 (621)
.=+.|++.|= .-.+.+.+.+.+|+.++.++..-|..+.++.++|...+...++.+
T Consensus 71 qId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~vq~~le~~ 128 (139)
T KOG1510|consen 71 QIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQVQSLLEDI 128 (139)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666664 335777888999999999999999999999999997766655543
No 221
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.96 E-value=1.5e+02 Score=27.59 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=42.1
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCCccchHH
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSAGGYLE 395 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kdwsGf~n 395 (621)
+-.+.|-|++.. .+.++|.+.|..|.++ .++..+.. .| .+|++.|.|...-....-
T Consensus 115 ~~~l~v~nL~~~---------~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a 173 (306)
T COG0724 115 NNTLFVGNLPYD---------VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKA 173 (306)
T ss_pred CceEEEeCCCCC---------CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHH
Confidence 677889999742 3578899999999998 56666664 34 599999999886554433
No 222
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.67 E-value=1.6e+03 Score=28.88 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=15.4
Q ss_pred ccCCCCCcceEEEEeCCCccchHHHHHH
Q 007021 372 SYGPQGHRGMSVLIFESSAGGYLEAERL 399 (621)
Q Consensus 372 l~g~~GH~G~aVV~F~kdwsGf~nA~rL 399 (621)
.++..++.-+.+|.|... +.+||.|
T Consensus 596 v~~~~v~~al~Li~yd~~---l~~amef 620 (1174)
T KOG0933|consen 596 VGNDNVELALSLIGYDDE---LKKAMEF 620 (1174)
T ss_pred hcCchHHHHHHHhcCCHH---HHHHHHH
Confidence 445556666667777654 5677765
No 223
>CHL00077 rps18 ribosomal protein S18
Probab=24.56 E-value=1e+02 Score=27.88 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=25.1
Q ss_pred EccCCCCCCCCcccccCchHHhhhccc-cC--------chhhhhHHHHHHHHHH
Q 007021 253 HCPACQGGPGAIDWYRGLQPLMTHAKT-KG--------SKRVKLHRELAELLDE 297 (621)
Q Consensus 253 ~CP~C~gkkkq~D~Y~~l~~LLqHA~g-vG--------ak~kalHrALa~lLe~ 297 (621)
.||+|.+. .+| |++.. ||++=.+ .| ---...||.|++-+..
T Consensus 19 ~~~~~~~~--~iD-YKnv~-lL~~Fis~~GkIlpRriTGl~~K~QR~l~~aIKr 68 (86)
T CHL00077 19 LPPIQSGD--RID-YKNMS-LLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQ 68 (86)
T ss_pred CCCCCCCC--cCC-ccCHH-HHHHhcCCCCeEcCcccCCcCHHHHHHHHHHHHH
Confidence 49999974 479 99664 5555333 34 1233567777666653
No 224
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=24.45 E-value=4.8e+02 Score=28.82 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhh
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKF 554 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f 554 (621)
|.+|++|-.+...-.-.|-++.++|++.+.-+....++.+.+. +..++.++||.+.....|.---..++..-|+|.
T Consensus 272 NnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm----~e~E~~KqemEe~G~~msDGaplvkIkqavsKL 347 (384)
T KOG0972|consen 272 NNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVM----DEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKL 347 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH----HHHHHHHHHHHHhcccccCCchHHHHHHHHHHH
Q ss_pred hh
Q 007021 555 IT 556 (621)
Q Consensus 555 ~~ 556 (621)
-+
T Consensus 348 k~ 349 (384)
T KOG0972|consen 348 KE 349 (384)
T ss_pred HH
No 225
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=24.42 E-value=9.6e+02 Score=26.29 Aligned_cols=124 Identities=12% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhhhh
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITV 557 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~ 557 (621)
...|+......++-|...+.-......--....+.+.+...+.....++++..+.+....--..-.--+..+.++.-..+
T Consensus 12 ~~~lk~~~~~~qk~l~~~~~l~~~~~k~~~~~e~~~~k~~~~~~~~~~~~~~~~~~~~~~la~~G~g~~~~~r~~~~~~i 91 (332)
T TIGR01541 12 DRKLKKLNTADEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGDKQRERLDARLQI 91 (332)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Q ss_pred hhHhHHHHHHHHHHHHHhhhh----------hHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007021 558 QDKEMEEFVAARDRLIKFHGE----------KMDAMRRRHWEEEVELEKGFDAELTQL 605 (621)
Q Consensus 558 q~kem~~f~~er~kl~~~~~~----------~~a~~k~~~~~ee~~leke~~~~l~~l 605 (621)
+++ |...+..|.+.+.. ...++.+.+-++.|+..+++.+++..+
T Consensus 92 ~~~----~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d~~ 145 (332)
T TIGR01541 92 DRT----FRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYAAEDAL 145 (332)
T ss_pred HHH----HHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 226
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.28 E-value=1.6e+03 Score=28.74 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLR 507 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~ 507 (621)
.+.|++.+..+... --..++..|+++++..+..+-+||++.....--|+
T Consensus 619 ~f~~~~~~l~~~~~---~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le 667 (1072)
T KOG0979|consen 619 NFFSVSPVLEELDN---RIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE 667 (1072)
T ss_pred hhhccchHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555 44556666777776666666666666555443333
No 227
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.10 E-value=8.1e+02 Score=29.59 Aligned_cols=94 Identities=21% Similarity=0.214 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhcCC-CCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhh
Q 007021 505 KLRETMEENRIVKQ----RTKMQHEQNKEEVKQSIAN-PKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEK 579 (621)
Q Consensus 505 sL~r~mEE~d~L~~----r~k~~h~~~~ee~~q~~~~-~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~ 579 (621)
.|..+..|.+.|.+ +.|+..+++..|+.+.-.. .-+.+ --.|.+.+..+++.+..+.-++-+.=+.+|...++.
T Consensus 291 ~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~-~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~kee 369 (660)
T KOG4302|consen 291 IIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEE-NESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEE 369 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 33334344444432 3345555555555444211 11111 122456777778888777777666644444333322
Q ss_pred HH-----HHHHHHHHHHHHhhhhhH
Q 007021 580 MD-----AMRRRHWEEEVELEKGFD 599 (621)
Q Consensus 580 ~a-----~~k~~~~~ee~~leke~~ 599 (621)
.. .=+.+-|..-.|.|..++
T Consensus 370 a~srk~il~~ve~W~sa~EeE~~le 394 (660)
T KOG4302|consen 370 ALSRKEILERVEKWESACEEESWLE 394 (660)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 11 113455666666555543
No 228
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=23.90 E-value=1e+03 Score=26.53 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=37.5
Q ss_pred CchhhhhhhhhhhhhhHHHHHHHHhcccCceeecCCCCeeEccCCCCCCCCcccccCchHHhhhccccC
Q 007021 213 DSDTSQKSHDTRKKSRWFKKFFESLESLTVEEINEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKG 281 (621)
Q Consensus 213 Dsd~se~s~e~~k~~kwf~K~ye~Lksg~~kvkn~~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~gvG 281 (621)
|.+|+..|-|||- |+..+.+|.+++...+.-..+=+++..=|.+-= -. +. .=|++=|.|+|
T Consensus 84 ~~~Aa~RYi~~rl-s~~~~~l~~~~d~~~l~~~~~~Dg~~~EP~~~~--p~---iP--~vLvNG~~GIa 144 (426)
T PF00521_consen 84 DKDAAMRYIETRL-SKIARDLFPDIDDDTLDYVPNYDGSEIEPEVYP--PI---IP--MVLVNGASGIA 144 (426)
T ss_dssp CTBTTTTTCEEEE--HHHHHHCTTTTTTCS-EEEETTSSSEEESS-----S---S---HHHHHTEEEES
T ss_pred CCCCccceEEEec-hHhHHHHHhhhcccccccCcCccccccchHHhh--hc---Cc--HHhccCCcchh
Confidence 4448888888776 889999999988876653322156666665531 11 22 24678888876
No 229
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.77 E-value=8.8e+02 Score=29.89 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=49.0
Q ss_pred eccccccCCCCccccccc--ccccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 007021 434 MALKEDLDVFNQHCHGKT--KQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETME 511 (621)
Q Consensus 434 lAradDyd~~d~~siGe~--rkkgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mE 511 (621)
+|+.+|.+. .+...+.. -..++-.|+.+++.+...+++..+..|--+.++...-+++|..+|.++.+.-. +..+.+
T Consensus 62 ~aqk~d~E~-ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEE-RITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE 139 (916)
T ss_pred Hhhhccccc-ccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh
Confidence 455666644 22123333 55666677777776666655566666666666666777777777777665433 444444
Q ss_pred HHHHHHHHH
Q 007021 512 ENRIVKQRT 520 (621)
Q Consensus 512 E~d~L~~r~ 520 (621)
=.-.|.||.
T Consensus 140 veael~qr~ 148 (916)
T KOG0249|consen 140 VEAELAQRN 148 (916)
T ss_pred hHHHHHHHH
Confidence 444445554
No 230
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.62 E-value=8.4e+02 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATF 499 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ 499 (621)
..+..|...+..+...+..||...
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544
No 231
>PHA00616 hypothetical protein
Probab=23.51 E-value=24 Score=28.09 Aligned_cols=22 Identities=23% Similarity=0.606 Sum_probs=16.4
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.|.||-|+.. |...+.|.+|-.
T Consensus 1 pYqC~~CG~~------F~~~s~l~~H~r 22 (44)
T PHA00616 1 MYQCLRCGGI------FRKKKEVIEHLL 22 (44)
T ss_pred CCccchhhHH------HhhHHHHHHHHH
Confidence 4789999743 555889999954
No 232
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.41 E-value=75 Score=36.48 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=30.1
Q ss_pred eEccCCCCCCCCcccccCchHHhhhccccCchhhhhHHHHHHHHHHhh
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKLHRELAELLDEEL 299 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA~gvGak~kalHrALa~lLe~dl 299 (621)
+.||+|. |+ |+.-+.|.+|--.+ +|+.+=..|+.-|+++-
T Consensus 293 lyC~vCn---Ks---FKseKq~kNHEnSK--KHkenv~eLrqemEEEe 332 (508)
T KOG0717|consen 293 LYCVVCN---KS---FKSEKQLKNHENSK--KHKENVAELRQEMEEEE 332 (508)
T ss_pred eEEeecc---cc---ccchHHHHhhHHHH--HHHHHHHHHHHHHHHhh
Confidence 9999995 22 77789999995443 56666677888888773
No 233
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.21 E-value=4.6e+02 Score=29.05 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 483 NRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 483 nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
..|+..++|...++..+..+...|.++-.+......|+
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI 257 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI 257 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777776655555555
No 234
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.17 E-value=36 Score=37.31 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=10.4
Q ss_pred CCeeEccCCCCCC
Q 007021 249 ARQWHCPACQGGP 261 (621)
Q Consensus 249 ~~tf~CP~C~gkk 261 (621)
.-+|.|||||...
T Consensus 374 ~~~FKCPYCP~~~ 386 (396)
T COG5109 374 VLSFKCPYCPEMS 386 (396)
T ss_pred cEEeeCCCCCcch
Confidence 4589999999753
No 235
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=23.16 E-value=5.2e+02 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q 007021 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRET 509 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~ 509 (621)
..|-.++......+.+|...|+.++.+-...
T Consensus 17 ~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l 47 (157)
T PF04136_consen 17 DQLLDQTDEILDQLDELQEQYNSVSEKTNSL 47 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444444445555555555444443333
No 236
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.15 E-value=43 Score=41.27 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=8.4
Q ss_pred hHHHHHHHHhccc
Q 007021 228 RWFKKFFESLESL 240 (621)
Q Consensus 228 kwf~K~ye~Lksg 240 (621)
+.|..++..|.++
T Consensus 962 ~~f~~~i~~lq~~ 974 (1010)
T KOG1991|consen 962 QLFKEAITNLQSS 974 (1010)
T ss_pred HHHHHHHHhhhcc
Confidence 5666666666665
No 237
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.06 E-value=1.1e+03 Score=26.96 Aligned_cols=135 Identities=17% Similarity=0.213 Sum_probs=39.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHh--hHHHHHhhcCCCCChhHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM-EENRIVKQRTKMQHEQ--NKEEVKQSIANPKNTEDYKLRAE 549 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m-EE~d~L~~r~k~~h~~--~~ee~~q~~~~~s~~e~~r~~~E 549 (621)
-.-++|.++...|..-.+.|++|+.-+....-.+.++. .|.+.+++--.....| ....++ +|+..-.+
T Consensus 243 p~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~---------eDl~k~~e 313 (424)
T PF03915_consen 243 PSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLK---------EDLKKASE 313 (424)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 56788999999999999999999999988886666665 3455554433211111 000000 01111111
Q ss_pred ---HHhhhhhhhhH------------------------hHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHh--hhhh
Q 007021 550 ---EIAKFITVQDK------------------------EMEEFVAARDRLIKFHGEKMDAMRRR--HWEEEVEL--EKGF 598 (621)
Q Consensus 550 ---~i~~f~~~q~k------------------------em~~f~~er~kl~~~~~~~~a~~k~~--~~~ee~~l--eke~ 598 (621)
.|..++..|.+ -|..+=.|=.-|.=+|+....|+-+- -||.|+++ .-+|
T Consensus 314 tf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL~PDHE~RLeAIerAEKlRqkele~~~~~~f 393 (424)
T PF03915_consen 314 TFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRALQPDHESRLEAIERAEKLRQKELEYRRVDEF 393 (424)
T ss_dssp HHHHHHHHCT----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 12222222222 12222223334455677777777653 47777764 4589
Q ss_pred HHHHHHHHHhhcCCcccc
Q 007021 599 DAELTQLMEKYSTHITEV 616 (621)
Q Consensus 599 ~~~l~~lm~k~~~~~~~~ 616 (621)
..||...++.-+...+.+
T Consensus 394 ~~EL~~FV~~~kLKksGG 411 (424)
T PF03915_consen 394 QKELGNFVEEKKLKKSGG 411 (424)
T ss_dssp ------------------
T ss_pred HHHHHHHhccCcccccCC
Confidence 999999998877665543
No 238
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=23.04 E-value=6.7e+02 Score=29.47 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=64.1
Q ss_pred HHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHHHhhhhhhhhHh
Q 007021 482 KNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEEIAKFITVQDKE 561 (621)
Q Consensus 482 ~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~i~~f~~~q~ke 561 (621)
-+-.+.-.+.++.|-.=...--..|.++-|+...-++|+.-.+.++++++-.+.++-+. ....+..-.+.|+.-+|+
T Consensus 9 ~~~f~~l~r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~---ldvklkha~~~vda~ik~ 85 (604)
T KOG3564|consen 9 RNLFEQLVRDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSA---LDVKLKHARNQVDAEIKR 85 (604)
T ss_pred HHhHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHH
Confidence 33344445555666555545557899999999999999999999999997666665552 223456777788888888
Q ss_pred HHHHHHHHHHHH
Q 007021 562 MEEFVAARDRLI 573 (621)
Q Consensus 562 m~~f~~er~kl~ 573 (621)
....+++++++-
T Consensus 86 rr~ae~d~~~~E 97 (604)
T KOG3564|consen 86 RRRAEADCEKLE 97 (604)
T ss_pred HHHHhhhHHHHH
Confidence 888888888763
No 239
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=22.74 E-value=1.3e+02 Score=34.02 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=38.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCcc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAG 391 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G-H~G~aVV~F~kdws 391 (621)
.+.|.|++.. .+...|.+.|+.|..+ .++......| +.|++.|.|.+.-+
T Consensus 90 ~vfV~nLp~~---------~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~ 141 (562)
T TIGR01628 90 NIFVKNLDKS---------VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEES 141 (562)
T ss_pred ceEEcCCCcc---------CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHH
Confidence 4677887642 2578899999999876 4667777777 68999999998643
No 240
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=22.73 E-value=1.2e+03 Score=26.78 Aligned_cols=17 Identities=29% Similarity=0.685 Sum_probs=8.8
Q ss_pred HHHhhhhhHHHHHHHHH
Q 007021 591 EVELEKGFDAELTQLME 607 (621)
Q Consensus 591 e~~leke~~~~l~~lm~ 607 (621)
..+|+++|...|..-++
T Consensus 354 ~~e~~~~~~~~i~~~v~ 370 (582)
T PF09731_consen 354 AIELQREFEKEIKEKVE 370 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555554444
No 241
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=50 Score=36.40 Aligned_cols=27 Identities=26% Similarity=0.746 Sum_probs=18.1
Q ss_pred HHHHHHHhcccCceeecCCCCeeEccCCCCCCCC
Q 007021 230 FKKFFESLESLTVEEINEPARQWHCPACQGGPGA 263 (621)
Q Consensus 230 f~K~ye~Lksg~~kvkn~~~~tf~CP~C~gkkkq 263 (621)
|++||+.-+= .-..+||||.|..+..+
T Consensus 270 ~~~f~~~e~L-------~g~d~W~CpkC~~k~ss 296 (415)
T COG5533 270 IDRFYEEEKL-------EGKDAWRCPKCGRKESS 296 (415)
T ss_pred HHHhhhHHhh-------cCcccccCchhcccccc
Confidence 6777764332 22789999999866444
No 242
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.52 E-value=4.2e+02 Score=24.87 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
|+.|..+|....+.+.+|...+.++-+.=..+--||+.|+.|..
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333333333333344555555444
No 243
>PRK14139 heat shock protein GrpE; Provisional
Probab=22.51 E-value=3.1e+02 Score=27.79 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 484 RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 484 qIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
.+..-...+.+|+..+.+...++.|+.-|.+-.++|+....++.+.-
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667888888888888999999999999998777655544
No 244
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=9.1e+02 Score=25.68 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=46.6
Q ss_pred cHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007021 459 SYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS 534 (621)
Q Consensus 459 SisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~ 534 (621)
++.+...++.- .+++ +..+..+++.-.+.++.-++. -++.+++.|..-|-+.|++|++...+..+.=..|+
T Consensus 51 ~~~e~~~~e~~---~~~~-l~~~~ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~ 121 (236)
T KOG3003|consen 51 TYGEDCESELA---PDDK-LGPSLAEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQS 121 (236)
T ss_pred cccccchhhhc---chhc-cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655 5555 444444444444444444444 78888999999999999999998877655444443
No 245
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.39 E-value=9.7e+02 Score=26.68 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHhhHHH--HHhh---cCCCCC----------------hhHHHHHHHHHhhhhhhhhH
Q 007021 504 EKLRETM--EENRIVKQRTKMQHEQNKEE--VKQS---IANPKN----------------TEDYKLRAEEIAKFITVQDK 560 (621)
Q Consensus 504 ~sL~r~m--EE~d~L~~r~k~~h~~~~ee--~~q~---~~~~s~----------------~e~~r~~~E~i~~f~~~q~k 560 (621)
.+|+.|+ --.+-|+++|-..|-++..- ++|- ++++.+ ..+++++.|++..-.-.-+|
T Consensus 272 VKLREmLirtNmedlReqTHtrhYElyRr~kL~~Mgf~dv~~~~~p~s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvk 351 (406)
T KOG3859|consen 272 VKLREMLIRTNMEDLREQTHTRHYELYRRCKLEEMGFKDVDPDNKPFSLQETYEAKRNEFLGELQRKEEEMRQMFVQRVK 351 (406)
T ss_pred HHHHHHHccccHHHHhhhccccchHHHHHHHHHHcCCccCCCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh---hhhHHHHHHHHHh
Q 007021 561 EMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELE---KGFDAELTQLMEK 608 (621)
Q Consensus 561 em~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~le---ke~~~~l~~lm~k 608 (621)
+-| ++=.+.-+.-..|-..||+-|-+|--+|| ++|+++...||.|
T Consensus 352 ekE---~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 352 EKE---AELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 246
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.36 E-value=6.5e+02 Score=23.91 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
.+..+...+..-+..+..|...--.++.+|.++......|.+|+
T Consensus 45 ~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~ 88 (141)
T PF13874_consen 45 EIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRL 88 (141)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455554444455555555555555555554
No 247
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.20 E-value=1.6e+03 Score=28.22 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=10.6
Q ss_pred hHHHHHHHHhcccC
Q 007021 228 RWFKKFFESLESLT 241 (621)
Q Consensus 228 kwf~K~ye~Lksg~ 241 (621)
.++...|..+++..
T Consensus 163 ~lq~~vF~s~~s~r 176 (980)
T KOG0980|consen 163 ELQQTVFSSMNSSR 176 (980)
T ss_pred HHHHHHHHHhhhcc
Confidence 35678899988865
No 248
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=22.20 E-value=1.3e+03 Score=26.97 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=74.8
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHH--hhHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR--TKMQHE--QNKEEV 531 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r--~k~~h~--~~~ee~ 531 (621)
..-++.+|.. . ..+.++..|+..++.....|+ ++. ...+|.+.--|+++.+.. +.-..+ ...+++
T Consensus 305 ~~~~l~~il~---~---~~~~~~~~l~~eLe~~~~~l~---~~~--~~~sle~ifie~riy~~~~~~~~~~e~~~~~~~~ 373 (479)
T PRK09630 305 VETSISEILR---L---HTETLQGYLKKELLILEDSLS---REH--YHKTLEYIFIKHKLYDTVREMLSKRKTSPSSSDL 373 (479)
T ss_pred cccCHHHHHH---H---HHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHH
Confidence 4556777776 2 356777888877776655443 332 345666666666655532 000111 122221
Q ss_pred Hhh-c--CCCCChhHHHH--HHHHHhhhhhhhhHhHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007021 532 KQS-I--ANPKNTEDYKL--RAEEIAKFITVQDKEMEEFVAAR-DRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQL 605 (621)
Q Consensus 532 ~q~-~--~~~s~~e~~r~--~~E~i~~f~~~q~kem~~f~~er-~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~l 605 (621)
-.. + -.|= ....++ -.|.|.+.+++-+|++-.|+..+ ++.|+.-+...+..++ +-. .|-+=.=+=+..|
T Consensus 374 ~~~i~~~l~p~-~~~~~r~v~~~d~~~l~~i~i~ri~~fd~~k~~~~~~~~~~~~~~~~~-~l~---~~~~~~i~~~~~l 448 (479)
T PRK09630 374 HNAVLEALTPF-LDTLPTPVDKQATAQLASLTIKKILCFNENSYTKELACIEKKQAAVQK-DLS---QLKKYTVKYLKGL 448 (479)
T ss_pred HHHHHHhcCcc-hhhccCCCCHHHHHHHhhhhHHHhhhcCHHhHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHH
Confidence 111 0 1110 011111 13678888888999888888764 5666666666666552 111 1122223456788
Q ss_pred HHhhcCCc
Q 007021 606 MEKYSTHI 613 (621)
Q Consensus 606 m~k~~~~~ 613 (621)
.+||....
T Consensus 449 ~~kyg~~~ 456 (479)
T PRK09630 449 LETYGQLG 456 (479)
T ss_pred HHHhcCCC
Confidence 88987543
No 249
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.15 E-value=1.3e+03 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=22.4
Q ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 484 RVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 484 qIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
.|+..|.--|+-|.-.|.+=.+++++..|++.|..|+
T Consensus 188 ~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 188 AVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445556666666666777777777777654
No 250
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.14 E-value=8.1e+02 Score=24.58 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRET 509 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~ 509 (621)
....|..+|..-.....+|+....++...+..+
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444444444444444444433
No 251
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=22.13 E-value=47 Score=31.62 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=9.7
Q ss_pred CCeeEccCCCCC
Q 007021 249 ARQWHCPACQGG 260 (621)
Q Consensus 249 ~~tf~CP~C~gk 260 (621)
++.|.||.|++.
T Consensus 121 ~~~f~Cp~Cg~~ 132 (147)
T smart00531 121 DGTFTCPRCGEE 132 (147)
T ss_pred CCcEECCCCCCE
Confidence 577999999753
No 252
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.01 E-value=54 Score=40.44 Aligned_cols=7 Identities=29% Similarity=0.467 Sum_probs=3.6
Q ss_pred chHHhhh
Q 007021 270 LQPLMTH 276 (621)
Q Consensus 270 l~~LLqH 276 (621)
|+.|++|
T Consensus 979 yq~l~~~ 985 (1010)
T KOG1991|consen 979 YQKLIST 985 (1010)
T ss_pred HHHHHhc
Confidence 3455555
No 253
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=21.86 E-value=43 Score=36.85 Aligned_cols=8 Identities=25% Similarity=0.974 Sum_probs=3.8
Q ss_pred CCeeEccC
Q 007021 249 ARQWHCPA 256 (621)
Q Consensus 249 ~~tf~CP~ 256 (621)
...|+|-+
T Consensus 318 KnKWKc~L 325 (348)
T KOG2652|consen 318 KNKWKCYL 325 (348)
T ss_pred cceeeEEe
Confidence 44455543
No 254
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=21.76 E-value=1.2e+03 Score=26.48 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=17.7
Q ss_pred CCChhHHHHHHHHHhhhhhhhhHhH
Q 007021 538 PKNTEDYKLRAEEIAKFITVQDKEM 562 (621)
Q Consensus 538 ~s~~e~~r~~~E~i~~f~~~q~kem 562 (621)
++.+++-|.|-|+|+.++.+--|.|
T Consensus 173 ~~qLeeEk~RHeqis~mLilEcKka 197 (561)
T KOG1103|consen 173 EMQLEEEKKRHEQISLMLILECKKA 197 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778888888877665543
No 255
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.69 E-value=2e+03 Score=28.94 Aligned_cols=12 Identities=0% Similarity=-0.149 Sum_probs=6.0
Q ss_pred CCCChhHHHHHH
Q 007021 537 NPKNTEDYKLRA 548 (621)
Q Consensus 537 ~~s~~e~~r~~~ 548 (621)
.+-+.++.....
T Consensus 433 ~~~SdEeLe~~L 444 (1486)
T PRK04863 433 PDLTADNAEDWL 444 (1486)
T ss_pred CCCCHHHHHHHH
Confidence 355555555333
No 256
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=21.67 E-value=8e+02 Score=24.33 Aligned_cols=29 Identities=38% Similarity=0.504 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 493 KALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 493 qeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
..|...++....+++++-+||+.|.+|--
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666677777766653
No 257
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.52 E-value=3.4e+02 Score=27.74 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=29.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 491 HSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 491 ~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
.+++|+..+.+...++.|+.-|.+-+++|+....++.+.-
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777888999999999999997666654443
No 258
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.42 E-value=31 Score=40.59 Aligned_cols=21 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 007021 479 IYLKNRVVKEQRHSKALEATF 499 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ 499 (621)
..+..+++...+.+.+|..++
T Consensus 263 ~d~~~~~e~le~ei~~L~q~~ 283 (713)
T PF05622_consen 263 DDLKIELEELEKEIDELRQEN 283 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 259
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.21 E-value=1.4e+03 Score=27.18 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQS 534 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~ 534 (621)
.-+.+++..|+++++.+-.+++.+.....+....-++.+-+..+.+-..+...++++++
T Consensus 446 ~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l 504 (581)
T KOG0995|consen 446 EHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNL 504 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777776666666666666666666666666666655555555555544
No 260
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.19 E-value=1.1e+03 Score=25.84 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcC----CCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHH
Q 007021 499 FSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIA----NPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIK 574 (621)
Q Consensus 499 ~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~----~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~ 574 (621)
++++.--|+.+..++-.-.|.++-+++-.+-+...+.. .--+.|-.|.|.|.++.|--|---|-|.|++|=.||.+
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666555522211000000 01235667788899999988888899999999888888
Q ss_pred hhhhhHHHHHHHHHHHHH--------HhhhhhHHHHHHHHHhhc
Q 007021 575 FHGEKMDAMRRRHWEEEV--------ELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 575 ~~~~~~a~~k~~~~~ee~--------~leke~~~~l~~lm~k~~ 610 (621)
.+=.+.-+|- |.+..| .+++|+.+.+--..+|..
T Consensus 183 ~Y~l~f~nl~--yL~~qldd~~rse~~rqeeaensm~~i~ekl~ 224 (338)
T KOG3647|consen 183 RYFLRFHNLD--YLKSQLDDRTRSEPIRQEEAENSMPFIPEKLI 224 (338)
T ss_pred HHHHHHhhHH--HHHHHHHHHhhhhHHHHHHHHhcchhhHHHhh
Confidence 7777655543 444443 345555555554445543
No 261
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=21.14 E-value=41 Score=26.87 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=7.6
Q ss_pred EccCCCCCCC
Q 007021 253 HCPACQGGPG 262 (621)
Q Consensus 253 ~CP~C~gkkk 262 (621)
.||||++...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 5999987643
No 262
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=21.05 E-value=4.9e+02 Score=24.35 Aligned_cols=48 Identities=25% Similarity=0.270 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
-.-+..-|+.-|-..+..-.+|.+.+-.....|++.++|+|.|.-|..
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788777788888889999999999999999999999887764
No 263
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=21.00 E-value=1.6e+02 Score=34.93 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=42.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC--CcceEEEEeCCCccchHHHHHHHHHHh
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG--HRGMSVLIFESSAGGYLEAERLHKHFA 404 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G--H~G~aVV~F~kdwsGf~nA~rLekhFe 404 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++...++.+ ++||+.|+|.+- .--..|+.--+.|+
T Consensus 206 rLfVgnLp~~---------vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~-e~A~kAI~amNg~e 270 (612)
T TIGR01645 206 RIYVASVHPD---------LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL-QSQSEAIASMNLFD 270 (612)
T ss_pred eEEeecCCCC---------CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH-HHHHHHHHHhCCCe
Confidence 5667777542 3578899999999997 4677776543 799999999973 33334444444444
No 264
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=20.90 E-value=39 Score=29.68 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=4.4
Q ss_pred CCeeEccCCCC
Q 007021 249 ARQWHCPACQG 259 (621)
Q Consensus 249 ~~tf~CP~C~g 259 (621)
...|.||||..
T Consensus 20 ~~~F~CPfC~~ 30 (81)
T PF05129_consen 20 PKVFDCPFCNH 30 (81)
T ss_dssp SS----TTT--
T ss_pred CceEcCCcCCC
Confidence 58999999984
No 265
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=20.82 E-value=1.5e+02 Score=22.80 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=26.2
Q ss_pred HHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHHHH
Q 007021 357 LLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHF 403 (621)
Q Consensus 357 L~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhF 403 (621)
|.+.|+.|+.+. ++..... ++++.|+|.+ -.+|...-+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~----~~~A~~a~~~l 41 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFAS----VEDAQKAIEQL 41 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESS----HHHHHHHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECC----HHHHHHHHHHh
Confidence 567889999875 4444433 7899999974 34555555555
No 266
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.71 E-value=1.1e+03 Score=25.73 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCCCChhHHHHHHHH
Q 007021 471 MSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSIANPKNTEDYKLRAEE 550 (621)
Q Consensus 471 m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~~~~s~~e~~r~~~E~ 550 (621)
|...-..|.-+-+++....+-+.++..+-++....++.+-++.|.|..+++++.++..+-..+-+.--...-++|-+-.+
T Consensus 1 ~~~~~~~~~E~e~K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 1 SLAMLDKLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred CchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhh
Q 007021 551 IAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELE 595 (621)
Q Consensus 551 i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~le 595 (621)
|..-+...-++..++...++... .-+--+.++.+.+=+-|...+
T Consensus 81 in~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 81 INAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEKKQQ 124 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHHHHH
No 267
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=20.70 E-value=1.4e+02 Score=33.08 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=39.7
Q ss_pred EEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCccc
Q 007021 335 IIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGG 392 (621)
Q Consensus 335 II~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kdwsG 392 (621)
-|-|||-..-+ ..|+..|-.|.++ .|-+++|.+|.-||..|.|.+..+.
T Consensus 100 hVSNIPFrFRd---------pDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~da 149 (376)
T KOG0125|consen 100 HVSNIPFRFRD---------PDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADA 149 (376)
T ss_pred EeecCCccccC---------ccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhH
Confidence 35677765544 3478889899995 7999999999999999999998643
No 268
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.60 E-value=7.1e+02 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=9.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 007021 493 KALEATFSIVSEKLRETMEENRIV 516 (621)
Q Consensus 493 qeLE~k~ne~s~sL~r~mEE~d~L 516 (621)
+++|..+.++...|.++...-..+
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~k~~ 28 (200)
T cd07639 5 EEVEAEVSELETRLEKLVKLGSGM 28 (200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 269
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.53 E-value=2.6e+02 Score=30.77 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007021 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQR 519 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r 519 (621)
..|.++|....+++.+||..+.+++..+.....++..+..+
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~k 180 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDK 180 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555555444444444433
No 270
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=20.30 E-value=34 Score=33.44 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHhhhh
Q 007021 285 VKLHRELAELLDEELRR 301 (621)
Q Consensus 285 kalHrALa~lLe~dla~ 301 (621)
.-+-++|+++|-.-+..
T Consensus 63 ~dFeref~kmm~eS~~s 79 (170)
T PF04050_consen 63 EDFEREFQKMMAESLES 79 (170)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34558888888876644
No 271
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=20.23 E-value=9.5e+02 Score=24.97 Aligned_cols=47 Identities=13% Similarity=0.287 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIV----SEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~----s~sL~r~mEE~d~L~~r~k 521 (621)
+.+|.-|..+|+...+.+..++..|-.- ...|.|.+-|..+|+.|++
T Consensus 93 ~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~ 143 (223)
T cd07605 93 GELILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQ 143 (223)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6789999999999999999998777554 4578888888889988865
No 272
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=20.20 E-value=7.4e+02 Score=23.41 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcchhhhHHHHHHHH-----HHHHHHhHHHHHH
Q 007021 461 HEMVVNQIRQMSEDNQQLIYLKNR-----VVKEQRHSKALEA 497 (621)
Q Consensus 461 sEmv~E~~R~m~k~nklv~~L~nq-----Ie~knk~lqeLE~ 497 (621)
||+|+.++++|.++-+.|..+..+ .+.|..|++.++.
T Consensus 7 SeiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~ 48 (108)
T PF08855_consen 7 SEIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEE 48 (108)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHH
Confidence 689999999999999999999988 4777888877664
No 273
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.18 E-value=9.2e+02 Score=27.66 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 458 RSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 458 KSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
.||+|-+.+.- .+..|.++|..-..-|+.||..+..-...|...-.|...|++|...+-.
T Consensus 4 ~si~dy~~e~~--------~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~ 63 (508)
T PF04129_consen 4 ESIQDYLKESE--------NFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNV 63 (508)
T ss_pred hhHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665433 4778888888888889999999999999999888888888888854433
No 274
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.14 E-value=8e+02 Score=23.74 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATF 499 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ 499 (621)
++++..|..++....+++.+++..+
T Consensus 87 ~~~l~~l~~el~~l~~~~~~~~~~l 111 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERIQELESEL 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444433333333333333333
No 275
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.06 E-value=9.2e+02 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007021 485 VVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKM 522 (621)
Q Consensus 485 Ie~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~ 522 (621)
.+++-.+++.+.+.+..+.+.|+.-..+.+++.++...
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEq 260 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQ 260 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433
No 276
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=20.05 E-value=70 Score=22.57 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.7
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhccc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT 279 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g 279 (621)
+.|.|.+|.- +|.+...+.+|-.|
T Consensus 2 ~~~~C~~C~~------~~~~~~~~~~H~~g 25 (35)
T smart00451 2 GGFYCKLCNV------TFTDEISVEAHLKG 25 (35)
T ss_pred cCeEccccCC------ccCCHHHHHHHHCh
Confidence 4699999962 37778899999666
Done!