Query 007021
Match_columns 621
No_of_seqs 140 out of 160
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 4.4E-60 1.5E-64 451.4 13.5 167 322-500 3-172 (172)
2 3oja_B Anopheles plasmodium-re 90.9 2.5 8.7E-05 45.3 13.7 12 599-610 571-582 (597)
3 1wez_A HnRNP H', FTP-3, hetero 90.0 0.42 1.4E-05 40.5 5.4 57 332-398 16-73 (102)
4 2dfs_A Myosin-5A; myosin-V, in 89.4 9.4 0.00032 45.5 17.9 22 582-603 1056-1077(1080)
5 2cq3_A RNA-binding protein 9; 86.9 1.5 5E-05 36.3 6.6 49 332-389 16-65 (103)
6 2dnn_A RNA-binding protein 12; 85.6 1.4 4.9E-05 38.1 6.1 49 332-389 17-66 (109)
7 2cpy_A RNA-binding protein 12; 84.6 1.5 5E-05 37.4 5.7 47 333-388 17-66 (114)
8 2cqi_A Nucleolysin TIAR; RNA r 84.4 1.6 5.6E-05 36.0 5.7 48 332-388 16-64 (103)
9 2dgw_A Probable RNA-binding pr 84.1 2.1 7.1E-05 34.5 6.1 57 332-398 11-68 (91)
10 2lmi_A GRSF-1, G-rich sequence 84.1 1.6 5.6E-05 36.7 5.7 58 332-399 12-74 (107)
11 2dha_A FLJ20171 protein; RRM d 84.0 1.3 4.3E-05 39.4 5.1 56 332-397 24-85 (123)
12 1wg5_A Heterogeneous nuclear r 83.6 2 6.9E-05 35.9 6.0 48 332-388 16-66 (104)
13 2db1_A Heterogeneous nuclear r 83.4 1.9 6.5E-05 37.1 5.9 57 332-398 18-79 (118)
14 2hgm_A HNRPF protein, heteroge 83.3 1.9 6.5E-05 38.6 6.0 50 332-390 43-95 (126)
15 3ghg_A Fibrinogen alpha chain; 83.3 4.1 0.00014 45.2 9.6 32 479-510 88-119 (562)
16 2hgn_A Heterogeneous nuclear r 83.2 1.1 3.7E-05 40.7 4.4 48 332-388 47-95 (139)
17 3oja_B Anopheles plasmodium-re 82.5 16 0.00055 39.1 13.9 6 387-392 354-359 (597)
18 4f25_A Polyadenylate-binding p 80.6 1.8 6.2E-05 37.0 4.7 47 334-389 8-55 (115)
19 2ywk_A Putative RNA-binding pr 80.4 3.3 0.00011 33.4 6.0 51 332-391 17-69 (95)
20 2cpe_A RNA-binding protein EWS 80.1 3.5 0.00012 34.5 6.2 49 332-389 16-75 (113)
21 2err_A Ataxin-2-binding protei 79.9 3 0.0001 35.3 5.8 50 333-391 31-81 (109)
22 1x4a_A Splicing factor, argini 78.8 4.3 0.00015 33.8 6.4 49 332-389 23-71 (109)
23 2dnh_A Bruno-like 5, RNA bindi 78.5 4.3 0.00015 33.4 6.2 50 331-389 15-66 (105)
24 2e5j_A Methenyltetrahydrofolat 77.6 3 0.0001 34.2 4.9 47 332-389 20-66 (97)
25 2do4_A Squamous cell carcinoma 77.5 4.5 0.00015 33.1 6.0 49 332-389 18-68 (100)
26 3d2w_A TAR DNA-binding protein 77.1 5.2 0.00018 32.7 6.3 48 331-390 11-59 (89)
27 3ulh_A THO complex subunit 4; 76.9 4.6 0.00016 33.4 6.0 49 332-389 30-80 (107)
28 2do0_A HnRNP M, heterogeneous 75.9 4.8 0.00016 33.6 5.9 47 333-388 17-65 (114)
29 1wi8_A EIF-4B, eukaryotic tran 75.3 4.6 0.00016 33.4 5.5 56 332-397 16-74 (104)
30 2hgl_A HNRPF protein, heteroge 74.9 4.3 0.00015 36.5 5.6 48 332-388 45-97 (136)
31 2kt5_A RNA and export factor-b 74.6 6 0.00021 33.8 6.3 48 333-389 37-86 (124)
32 2dit_A HIV TAT specific factor 74.5 1.9 6.4E-05 36.7 3.0 58 332-390 16-75 (112)
33 2dng_A Eukaryotic translation 73.9 5.7 0.00019 32.7 5.8 48 332-388 16-65 (103)
34 2cq4_A RNA binding motif prote 73.9 7.8 0.00027 32.5 6.7 59 332-400 26-87 (114)
35 1wel_A RNA-binding protein 12; 73.9 4.7 0.00016 34.6 5.4 57 332-398 26-85 (124)
36 1whw_A Hypothetical protein ri 73.6 6.7 0.00023 31.9 6.1 48 333-389 10-60 (99)
37 2cph_A RNA binding motif prote 73.2 6.9 0.00023 32.2 6.1 49 332-389 16-68 (107)
38 2ek1_A RNA-binding protein 12; 73.1 3.9 0.00013 33.0 4.5 50 331-389 15-67 (95)
39 2elu_A Zinc finger protein 406 73.0 0.96 3.3E-05 33.0 0.6 21 252-278 10-30 (37)
40 2dgv_A HnRNP M, heterogeneous 72.4 6.6 0.00023 31.4 5.7 48 333-389 10-58 (92)
41 3nmr_A Cugbp ELAV-like family 72.3 4.7 0.00016 35.2 5.1 48 333-389 97-146 (175)
42 3ns6_A Eukaryotic translation 72.2 3.2 0.00011 34.5 3.9 54 333-389 8-64 (100)
43 3lqv_A PRE-mRNA branch site pr 72.1 6.8 0.00023 32.8 5.9 47 333-389 10-57 (115)
44 1s79_A Lupus LA protein; RRM, 71.9 7.3 0.00025 33.0 6.1 47 333-388 13-61 (103)
45 3vem_A Helicase protein MOM1; 71.4 8.6 0.00029 34.9 6.6 45 559-603 38-82 (115)
46 2la6_A RNA-binding protein FUS 71.3 8.6 0.00029 31.4 6.2 50 332-390 14-74 (99)
47 1x5u_A Splicing factor 3B subu 71.2 8.3 0.00028 31.6 6.1 49 332-389 16-67 (105)
48 1x5t_A Splicing factor 3B subu 70.7 8.2 0.00028 31.1 5.9 48 333-389 7-58 (96)
49 2xs2_A Deleted in azoospermia- 70.4 7.3 0.00025 31.9 5.6 57 332-398 10-68 (102)
50 2cpf_A RNA binding motif prote 70.2 4.6 0.00016 32.8 4.3 47 333-388 7-59 (98)
51 2cqg_A TDP-43, TAR DNA-binding 69.8 9.3 0.00032 31.3 6.1 47 333-388 17-66 (103)
52 4akv_A Sorting nexin-33; trans 69.4 69 0.0024 33.5 14.1 61 540-610 324-384 (386)
53 2rs2_A Musashi-1, RNA-binding 69.4 8.9 0.00031 32.3 6.1 48 332-388 26-76 (109)
54 2dhg_A TRNA selenocysteine ass 69.2 7.9 0.00027 31.7 5.6 48 333-389 11-61 (104)
55 1p27_B RNA-binding protein 8A; 69.2 9.4 0.00032 31.4 6.0 49 332-389 24-75 (106)
56 2dnl_A Cytoplasmic polyadenyla 68.9 6.3 0.00021 33.4 5.0 47 334-389 11-62 (114)
57 1x4h_A RNA-binding protein 28; 68.7 8.7 0.0003 31.8 5.8 49 333-390 17-68 (111)
58 4fxv_A ELAV-like protein 1; RN 68.6 9.5 0.00032 31.8 6.0 48 333-389 21-71 (99)
59 2f3j_A RNA and export factor b 68.5 7.6 0.00026 36.0 5.9 49 332-389 89-139 (177)
60 2dfs_A Myosin-5A; myosin-V, in 68.4 16 0.00055 43.5 9.9 29 492-520 923-951 (1080)
61 2cpz_A CUG triplet repeat RNA- 68.1 8.8 0.0003 32.2 5.8 48 332-388 26-76 (115)
62 2fy1_A RNA-binding motif prote 68.1 11 0.00036 32.3 6.3 47 333-388 9-57 (116)
63 3s7r_A Heterogeneous nuclear r 67.3 13 0.00044 29.4 6.3 50 332-390 12-64 (87)
64 2cqc_A Arginine/serine-rich sp 67.2 8.9 0.0003 30.7 5.4 48 333-389 17-67 (95)
65 3v4m_A Splicing factor U2AF 65 67.1 4.6 0.00016 34.5 3.8 59 332-390 6-70 (105)
66 2cqp_A RNA-binding protein 12; 67.0 5.6 0.00019 32.3 4.2 49 332-389 16-67 (98)
67 2dgo_A Cytotoxic granule-assoc 66.8 9.7 0.00033 31.8 5.7 47 333-388 17-66 (115)
68 1uaw_A Mouse-musashi-1; RNP-ty 66.7 8.6 0.0003 29.5 5.0 49 333-390 2-53 (77)
69 3md3_A Nuclear and cytoplasmic 66.5 9.9 0.00034 32.7 5.9 48 333-389 2-51 (166)
70 4a8x_A RNA-binding protein wit 66.4 9.9 0.00034 29.9 5.4 50 332-390 5-58 (88)
71 2lxi_A RNA-binding protein 10; 66.4 7 0.00024 32.0 4.7 48 333-389 3-54 (91)
72 2krb_A Eukaryotic translation 66.4 8.5 0.00029 30.3 5.0 54 333-389 3-57 (81)
73 2d9p_A Polyadenylate-binding p 66.4 8.7 0.0003 31.5 5.3 47 333-388 17-64 (103)
74 2dgs_A DAZ-associated protein 66.0 13 0.00045 30.2 6.2 56 333-398 12-70 (99)
75 3sde_A Paraspeckle component 1 66.0 18 0.0006 34.8 8.1 49 333-390 98-148 (261)
76 3ucg_A Polyadenylate-binding p 65.7 13 0.00046 29.3 6.1 48 333-389 8-58 (89)
77 1x5o_A RNA binding motif, sing 65.6 11 0.00037 31.5 5.8 49 331-388 25-75 (114)
78 3bs9_A Nucleolysin TIA-1 isofo 65.5 12 0.00041 29.4 5.7 47 333-388 8-57 (87)
79 1wf0_A TDP-43, TAR DNA-binding 64.6 9.2 0.00031 30.5 5.0 44 334-389 8-52 (88)
80 2dnz_A Probable RNA-binding pr 64.6 15 0.00053 29.4 6.3 48 333-389 7-57 (95)
81 2ghp_A U4/U6 snRNA-associated 64.5 9.7 0.00033 36.7 6.0 55 333-397 43-98 (292)
82 2voo_A Lupus LA protein; RNA-b 64.5 10 0.00036 35.5 6.1 50 332-390 110-161 (193)
83 2dgx_A KIAA0430 protein; RRM d 64.0 11 0.00037 30.9 5.4 47 333-389 11-62 (96)
84 1h2v_Z 20 kDa nuclear CAP bind 63.9 13 0.00045 32.9 6.3 50 331-389 39-91 (156)
85 3s8s_A Histone-lysine N-methyl 63.8 14 0.00049 31.5 6.3 48 333-389 8-58 (110)
86 1gd2_E Transcription factor PA 63.6 15 0.00053 30.4 6.1 42 486-527 25-66 (70)
87 2e5h_A Zinc finger CCHC-type a 63.5 13 0.00046 29.6 5.8 47 333-388 18-67 (94)
88 2fc9_A NCL protein; structure 63.1 9.7 0.00033 31.1 4.9 46 332-388 16-62 (101)
89 1x5s_A Cold-inducible RNA-bind 62.7 13 0.00043 30.4 5.5 48 332-388 13-63 (102)
90 3vkg_A Dynein heavy chain, cyt 62.6 95 0.0032 41.5 15.9 14 574-587 2038-2051(3245)
91 1rk8_A CG8781-PA, CG8781-PA pr 62.5 11 0.00037 34.0 5.6 49 331-388 72-123 (165)
92 2cqd_A RNA-binding region cont 62.5 15 0.00053 30.7 6.2 47 333-388 19-68 (116)
93 1x4b_A Heterogeneous nuclear r 62.2 15 0.00051 30.8 6.1 48 332-388 28-78 (116)
94 2j76_E EIF-4B, EIF4B, eukaryot 62.1 8.8 0.0003 31.6 4.5 56 332-397 20-78 (100)
95 1x4c_A Splicing factor, argini 62.0 15 0.0005 30.7 6.0 43 332-388 16-59 (108)
96 2x1f_A MRNA 3'-END-processing 61.9 17 0.00058 29.4 6.2 48 333-389 4-54 (96)
97 3nmr_A Cugbp ELAV-like family 61.9 11 0.00036 32.9 5.3 48 333-389 5-57 (175)
98 2lkz_A RNA-binding protein 5; 61.8 12 0.00042 31.3 5.4 49 333-390 11-64 (95)
99 1p1t_A Cleavage stimulation fa 61.4 11 0.00037 30.8 4.9 48 333-389 10-60 (104)
100 3ex7_B RNA-binding protein 8A; 61.2 14 0.00047 31.4 5.7 49 332-389 23-74 (126)
101 2mss_A Protein (musashi1); RNA 61.1 16 0.00054 28.1 5.6 47 334-389 2-51 (75)
102 2cq0_A Eukaryotic translation 61.0 9.7 0.00033 31.2 4.6 49 332-389 16-67 (103)
103 3mdf_A Peptidyl-prolyl CIS-tra 61.0 14 0.00047 28.9 5.3 48 333-389 9-59 (85)
104 2dh8_A DAZ-associated protein 60.7 11 0.00037 31.0 4.9 58 332-399 17-77 (105)
105 1oo0_B CG8781-PA, drosophila Y 60.7 18 0.0006 30.0 6.2 49 332-389 27-78 (110)
106 2dnm_A SRP46 splicing factor; 60.6 18 0.00063 29.5 6.2 50 332-390 14-66 (103)
107 1l3k_A Heterogeneous nuclear r 60.3 16 0.00056 32.5 6.3 49 332-389 105-156 (196)
108 4f02_A Polyadenylate-binding p 60.0 9.7 0.00033 35.5 4.9 49 333-390 105-154 (213)
109 2jwn_A Embryonic polyadenylate 59.6 14 0.00049 31.2 5.5 51 331-390 36-89 (124)
110 1fxl_A Paraneoplastic encephal 59.3 17 0.00057 31.2 6.0 47 333-388 4-53 (167)
111 1deq_A Fibrinogen (alpha chain 59.1 61 0.0021 34.7 11.2 67 473-539 85-167 (390)
112 2ki2_A SS-DNA binding protein 58.8 10 0.00035 30.2 4.2 48 334-390 4-54 (90)
113 2dgp_A Bruno-like 4, RNA bindi 58.7 16 0.00054 30.0 5.5 48 333-389 15-65 (106)
114 3beg_B Splicing factor, argini 58.4 17 0.00058 30.9 5.8 52 332-398 17-69 (115)
115 2fc8_A NCL protein; structure 58.1 12 0.00042 30.4 4.7 45 333-388 17-63 (102)
116 2hvz_A Splicing factor, argini 57.9 13 0.00045 30.3 4.9 52 334-398 3-55 (101)
117 2nlw_A Eukaryotic translation 57.9 17 0.00059 30.2 5.7 54 333-390 17-72 (105)
118 2g4b_A Splicing factor U2AF 65 57.7 18 0.00063 31.4 6.0 51 331-390 94-147 (172)
119 2dnq_A RNA-binding protein 4B; 57.3 18 0.00062 28.9 5.5 42 333-388 10-51 (90)
120 3md1_A Nuclear and cytoplasmic 57.2 19 0.00065 28.0 5.5 48 333-389 3-53 (83)
121 2cqb_A Peptidyl-prolyl CIS-tra 56.8 16 0.00054 29.7 5.2 48 333-389 14-64 (102)
122 2wbr_A GW182, gawky, LD47780P; 56.1 15 0.0005 31.8 4.9 44 334-389 10-53 (89)
123 2khc_A Testis-specific RNP-typ 56.0 20 0.00068 30.0 5.8 50 332-390 41-93 (118)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 55.6 26 0.00089 29.9 6.6 49 332-389 64-115 (140)
125 3vkg_A Dynein heavy chain, cyt 55.1 2.1E+02 0.0072 38.3 17.2 33 469-501 1927-1959(3245)
126 3hnw_A Uncharacterized protein 54.7 80 0.0027 29.0 9.9 70 457-526 30-125 (138)
127 1iqt_A AUF1, heterogeneous nuc 54.6 15 0.00052 28.1 4.4 55 334-398 2-59 (75)
128 1wf1_A RNA-binding protein RAL 54.6 15 0.00052 30.5 4.8 45 333-390 29-73 (110)
129 2kxn_B Transformer-2 protein h 54.1 17 0.00057 31.8 5.2 48 333-389 48-98 (129)
130 1x4e_A RNA binding motif, sing 54.0 21 0.00071 28.0 5.3 56 333-398 7-65 (85)
131 1why_A Hypothetical protein ri 53.9 24 0.00082 28.5 5.8 44 333-389 19-63 (97)
132 1b7f_A Protein (SXL-lethal pro 53.6 26 0.00089 30.2 6.3 48 332-388 90-140 (168)
133 2kn4_A Immunoglobulin G-bindin 53.5 41 0.0014 29.5 7.7 50 331-389 70-122 (158)
134 1whx_A Hypothetical protein ri 52.9 23 0.00079 29.9 5.7 46 333-390 12-57 (111)
135 2div_A TRNA selenocysteine ass 52.3 22 0.00077 28.7 5.3 48 333-389 11-62 (99)
136 2xnq_A Nuclear polyadenylated 52.3 26 0.00087 28.8 5.7 44 333-389 24-67 (97)
137 2qfj_A FBP-interacting repress 52.2 24 0.00083 31.9 6.1 49 332-389 29-80 (216)
138 2yh0_A Splicing factor U2AF 65 52.0 27 0.00091 31.1 6.3 52 331-391 114-168 (198)
139 1fjc_A Nucleolin RBD2, protein 51.3 12 0.0004 30.2 3.5 45 333-389 18-63 (96)
140 2jvr_A Nucleolar protein 3; RN 51.0 21 0.00071 31.0 5.2 47 332-388 29-76 (111)
141 1x4g_A Nucleolysin TIAR; struc 50.7 22 0.00075 29.5 5.1 45 332-389 26-71 (109)
142 2ghp_A U4/U6 snRNA-associated 50.6 24 0.00082 33.9 6.1 52 330-389 209-264 (292)
143 2ytc_A PRE-mRNA-splicing facto 50.6 25 0.00085 27.5 5.2 43 333-388 14-57 (85)
144 2la4_A Nuclear and cytoplasmic 50.5 24 0.00084 28.6 5.3 45 333-390 29-74 (101)
145 2dis_A Unnamed protein product 50.3 29 0.00098 28.5 5.8 47 333-388 10-61 (109)
146 4emc_A Monopolin complex subun 50.2 50 0.0017 32.3 8.1 61 457-520 4-64 (190)
147 2cpi_A CCR4-NOT transcription 50.0 20 0.00068 30.1 4.8 49 332-389 16-73 (111)
148 3ghg_A Fibrinogen alpha chain; 50.0 26 0.00088 39.1 6.8 20 569-588 219-238 (562)
149 2kvi_A Nuclear polyadenylated 50.0 24 0.00082 28.7 5.2 42 334-388 13-54 (96)
150 2jrs_A RNA-binding protein 39; 49.9 22 0.00076 29.9 5.1 49 332-389 27-78 (108)
151 2jvo_A Nucleolar protein 3; nu 49.5 22 0.00074 30.0 5.0 42 332-388 32-74 (108)
152 1ykh_B RNA polymerase II holoe 49.2 82 0.0028 28.6 9.0 52 475-526 70-128 (132)
153 2cjk_A Nuclear polyadenylated 49.1 30 0.001 29.9 5.9 49 332-389 88-139 (167)
154 2m2b_A RNA-binding protein 10; 48.6 19 0.00064 31.2 4.5 48 333-389 25-77 (131)
155 3tyt_A Heterogeneous nuclear r 48.5 24 0.00083 33.2 5.7 56 333-398 125-183 (205)
156 1u6f_A Tcubp1, RNA-binding pro 48.4 23 0.0008 30.5 5.1 48 333-389 44-94 (139)
157 1yke_B RNA polymerase II holoe 48.0 80 0.0027 29.5 9.0 54 475-528 70-130 (151)
158 1fxl_A Paraneoplastic encephal 47.9 37 0.0013 29.0 6.3 49 332-389 89-140 (167)
159 3dyt_A Sorting nexin-9; 3-heli 47.8 2.5E+02 0.0085 28.9 13.6 60 541-610 305-364 (366)
160 2cpd_A Apobec-1 stimulating pr 47.5 30 0.001 28.1 5.4 45 333-389 17-61 (99)
161 1nu4_A U1A RNA binding domain; 47.5 13 0.00044 29.9 3.1 48 333-389 10-61 (97)
162 1i84_S Smooth muscle myosin he 47.1 47 0.0016 39.7 8.9 15 230-244 352-366 (1184)
163 2pe8_A Splicing factor 45; RRM 46.9 44 0.0015 28.4 6.5 87 333-444 10-100 (105)
164 3p5t_L Cleavage and polyadenyl 46.7 20 0.00067 28.8 4.1 55 333-397 3-62 (90)
165 1deq_A Fibrinogen (alpha chain 46.2 3.1E+02 0.011 29.5 15.7 38 473-510 64-101 (390)
166 3smz_A Protein raver-1, ribonu 45.9 31 0.0011 33.0 6.1 50 332-389 185-236 (284)
167 1b7f_A Protein (SXL-lethal pro 45.9 28 0.00094 30.1 5.2 48 333-389 5-55 (168)
168 2cpj_A Non-POU domain-containi 45.8 33 0.0011 27.8 5.4 46 332-390 16-62 (99)
169 2qfj_A FBP-interacting repress 45.7 31 0.0011 31.2 5.7 48 332-388 126-176 (216)
170 2cpx_A Hypothetical protein FL 45.7 16 0.00056 30.4 3.6 47 332-389 26-77 (115)
171 2i2y_A Fusion protein consists 45.6 30 0.001 30.3 5.5 46 332-389 74-120 (150)
172 2cjk_A Nuclear polyadenylated 45.3 33 0.0011 29.6 5.6 49 333-390 5-56 (167)
173 3pgw_S U1-70K; protein-RNA com 45.1 22 0.00075 37.8 5.3 56 332-397 103-161 (437)
174 1fje_B Nucleolin RBD12, protei 44.1 33 0.0011 30.1 5.5 47 332-389 100-146 (175)
175 2e5g_A U6 snRNA-specific termi 43.4 56 0.0019 26.2 6.4 54 333-398 10-63 (94)
176 2m0f_A Zinc finger and BTB dom 42.8 11 0.00036 22.7 1.5 22 250-277 1-22 (29)
177 1l3k_A Heterogeneous nuclear r 42.5 34 0.0012 30.4 5.4 47 333-388 15-64 (196)
178 2efl_A Formin-binding protein 42.5 2.4E+02 0.0082 27.2 15.0 27 584-610 206-240 (305)
179 2hzc_A Splicing factor U2AF 65 42.2 36 0.0012 26.5 5.0 45 332-389 7-63 (87)
180 2dgu_A Heterogeneous nuclear r 41.7 31 0.0011 28.2 4.7 43 333-389 13-55 (103)
181 1jmt_A Splicing factor U2AF 35 41.6 26 0.00089 29.6 4.3 36 356-391 42-80 (104)
182 1sjq_A Polypyrimidine tract-bi 41.4 36 0.0012 29.6 5.2 45 332-389 17-62 (105)
183 2cq1_A PTB-like protein L; RRM 41.4 40 0.0014 28.5 5.4 44 333-389 17-61 (101)
184 2dgt_A RNA-binding protein 30; 41.2 46 0.0016 26.6 5.5 41 333-388 12-53 (92)
185 3s6e_A RNA-binding protein 39; 41.2 29 0.00099 30.3 4.6 88 333-443 9-98 (114)
186 3tnu_B Keratin, type II cytosk 41.0 1.6E+02 0.0054 26.2 9.5 39 474-512 41-79 (129)
187 2lea_A Serine/arginine-rich sp 40.8 29 0.001 30.4 4.6 48 332-388 48-98 (135)
188 1nh2_C Transcription initiatio 40.7 4.8 0.00016 34.4 -0.5 17 243-260 43-59 (79)
189 3q2s_C Cleavage and polyadenyl 40.7 38 0.0013 32.6 5.8 56 333-398 70-130 (229)
190 2d9o_A DNAJ (HSP40) homolog, s 40.7 30 0.001 29.5 4.5 38 350-390 27-65 (100)
191 1wex_A Hypothetical protein (r 40.6 47 0.0016 28.2 5.7 44 332-388 16-60 (104)
192 2oqq_A Transcription factor HY 40.4 81 0.0028 24.1 6.1 33 489-521 9-41 (42)
193 3i1m_R 30S ribosomal protein S 40.3 22 0.00075 29.9 3.5 44 252-297 9-61 (75)
194 2kvh_A Zinc finger and BTB dom 39.9 14 0.00047 22.3 1.7 22 250-277 2-23 (27)
195 3pgw_A U1-A; protein-RNA compl 39.6 36 0.0012 32.5 5.4 46 332-389 208-254 (282)
196 2ad9_A Polypyrimidine tract-bi 39.5 45 0.0016 29.5 5.6 46 332-390 32-78 (119)
197 2e44_A Insulin-like growth fac 39.1 49 0.0017 26.5 5.4 47 332-389 16-64 (96)
198 3md3_A Nuclear and cytoplasmic 38.4 49 0.0017 28.2 5.6 48 333-389 89-139 (166)
199 2cqh_A IGF-II mRNA-binding pro 38.4 22 0.00074 28.5 3.1 44 333-389 10-54 (93)
200 1i84_S Smooth muscle myosin he 38.0 56 0.0019 39.0 7.7 16 380-395 769-784 (1184)
201 4etp_A Kinesin-like protein KA 37.9 76 0.0026 33.6 8.0 46 475-520 9-54 (403)
202 2m0d_A Zinc finger and BTB dom 37.6 15 0.00052 22.0 1.6 23 250-278 2-24 (30)
203 2dnp_A RNA-binding protein 14; 37.4 46 0.0016 26.5 4.9 42 333-389 11-53 (90)
204 3mq7_A Bone marrow stromal ant 37.2 2.1E+02 0.0071 26.2 9.5 26 492-517 73-98 (121)
205 3tnu_A Keratin, type I cytoske 37.1 1.7E+02 0.0058 26.2 9.1 58 473-530 42-99 (131)
206 1p7a_A BF3, BKLF, kruppel-like 37.0 16 0.00055 23.6 1.8 24 249-278 9-32 (37)
207 3htk_A Structural maintenance 36.9 1.4E+02 0.0048 22.9 8.5 46 473-518 9-54 (60)
208 2ayu_A Nucleosome assembly pro 36.8 6.8 0.00023 42.2 -0.2 6 120-125 296-301 (417)
209 3egn_A RNA-binding protein 40; 36.2 38 0.0013 29.4 4.6 48 333-389 47-102 (143)
210 2vqe_R 30S ribosomal protein S 35.4 29 0.00099 30.0 3.5 45 250-296 18-71 (88)
211 3s9g_A Protein hexim1; cyclin 34.7 2.5E+02 0.0085 25.0 9.8 61 458-518 17-86 (104)
212 3n9u_C Cleavage and polyadenyl 34.2 51 0.0018 29.8 5.2 48 333-389 57-109 (156)
213 3nmd_A CGMP dependent protein 34.2 60 0.002 27.3 5.1 48 454-501 18-65 (72)
214 2els_A Zinc finger protein 406 33.8 19 0.00066 23.2 1.7 24 249-278 7-30 (36)
215 1gs9_A Apolipoprotein E, APOE4 33.7 1.8E+02 0.0061 27.3 9.0 83 481-565 64-155 (165)
216 1fj7_A Nucleolin RBD1, protein 33.0 15 0.0005 30.0 1.2 57 332-398 18-76 (101)
217 2kvf_A Zinc finger and BTB dom 32.8 21 0.0007 21.5 1.7 23 250-278 2-24 (28)
218 3ue2_A Poly(U)-binding-splicin 32.7 42 0.0014 29.3 4.3 88 333-445 22-116 (118)
219 2efr_A General control protein 31.9 3E+02 0.01 25.9 10.1 50 475-524 41-90 (155)
220 1rik_A E6APC1 peptide; E6-bind 31.9 21 0.0007 21.5 1.6 22 251-278 2-23 (29)
221 1d7m_A Cortexillin I; coiled-c 31.7 2.7E+02 0.0091 24.5 9.2 36 468-503 24-59 (101)
222 1m1j_B Fibrinogen beta chain; 31.1 1.9E+02 0.0065 31.6 9.8 81 454-534 99-187 (464)
223 2m0e_A Zinc finger and BTB dom 30.9 22 0.00074 21.1 1.5 21 251-277 2-22 (29)
224 2elr_A Zinc finger protein 406 30.7 22 0.00075 22.8 1.6 23 249-277 7-29 (36)
225 3pq1_A Poly(A) RNA polymerase; 30.5 31 0.0011 37.6 3.6 36 353-390 65-100 (464)
226 3bas_A Myosin heavy chain, str 30.5 1.9E+02 0.0063 24.5 7.7 23 476-498 21-43 (89)
227 1klr_A Zinc finger Y-chromosom 30.5 24 0.00082 21.1 1.7 22 251-278 2-23 (30)
228 2elp_A Zinc finger protein 406 30.4 25 0.00087 22.7 1.9 23 249-277 7-30 (37)
229 2elt_A Zinc finger protein 406 30.4 23 0.00077 22.7 1.6 23 249-277 7-29 (36)
230 2efk_A CDC42-interacting prote 30.3 3.8E+02 0.013 25.8 14.5 16 594-609 217-232 (301)
231 3swf_A CGMP-gated cation chann 30.1 1.7E+02 0.0058 24.7 7.2 44 490-533 7-50 (74)
232 1ard_A Yeast transcription fac 30.0 21 0.00071 21.4 1.3 21 251-277 2-22 (29)
233 2yu5_A Zinc finger protein 473 29.6 29 0.00097 23.5 2.1 25 248-278 9-33 (44)
234 1wg1_A KIAA1579 protein, homol 29.6 57 0.002 25.9 4.3 42 334-389 8-50 (88)
235 3lf9_A 4E10_D0_1IS1A_001_C (T1 29.0 3.4E+02 0.012 24.8 14.0 101 460-573 2-110 (121)
236 3oja_A Leucine-rich immune mol 28.9 5.1E+02 0.018 26.9 12.8 26 549-574 410-435 (487)
237 2kvg_A Zinc finger and BTB dom 28.9 18 0.00063 21.9 0.9 22 250-277 2-23 (27)
238 2eou_A Zinc finger protein 473 28.8 27 0.00091 23.7 1.9 23 249-277 10-32 (44)
239 4f02_A Polyadenylate-binding p 28.7 82 0.0028 29.1 5.7 48 333-389 17-67 (213)
240 2eoy_A Zinc finger protein 473 28.6 30 0.001 23.7 2.2 24 249-278 10-33 (46)
241 2elx_A Zinc finger protein 406 28.6 27 0.00093 22.0 1.8 24 249-278 5-28 (35)
242 4gkw_A Spindle assembly abnorm 28.6 2E+02 0.0068 26.9 8.1 63 456-522 96-158 (167)
243 3na7_A HP0958; flagellar bioge 28.5 4.2E+02 0.014 25.8 18.3 34 477-510 19-52 (256)
244 1x4d_A Matrin 3; structural ge 28.3 57 0.002 27.8 4.3 56 332-404 16-73 (102)
245 2lcw_A RNA-binding protein FUS 34.2 12 0.00042 31.4 0.0 55 334-398 10-75 (116)
246 1srk_A Zinc finger protein ZFP 28.1 29 0.00098 22.1 1.8 24 249-278 5-28 (35)
247 2p22_C Protein SRN2; endosome, 27.9 2.5E+02 0.0084 27.1 9.0 107 476-594 65-190 (192)
248 2yo3_A General control protein 27.9 78 0.0027 32.4 5.7 52 473-524 213-264 (268)
249 2no2_A HIP-I, huntingtin-inter 27.7 3.2E+02 0.011 24.1 14.2 38 466-503 5-42 (107)
250 1ic2_A Tropomyosin alpha chain 27.5 2.6E+02 0.0089 23.0 10.5 48 478-525 22-69 (81)
251 1x5p_A Negative elongation fac 27.4 61 0.0021 26.1 4.1 34 352-388 25-58 (97)
252 1qm9_A Polypyrimidine tract-bi 27.4 72 0.0024 28.6 5.0 54 333-398 5-59 (198)
253 3r27_A HnRNP L, heterogeneous 27.3 1.1E+02 0.0038 26.3 5.9 44 333-389 23-67 (100)
254 2adc_A Polypyrimidine tract-bi 27.2 74 0.0025 29.7 5.2 45 333-388 36-81 (229)
255 1sjr_A Polypyrimidine tract-bi 27.0 68 0.0023 30.2 4.9 46 334-389 49-94 (164)
256 4etp_A Kinesin-like protein KA 26.9 1.4E+02 0.0047 31.6 7.8 54 477-530 4-57 (403)
257 2elq_A Zinc finger protein 406 26.8 31 0.0011 22.1 1.8 23 249-277 7-29 (36)
258 2em2_A Zinc finger protein 28 26.7 33 0.0011 23.5 2.0 24 248-277 9-32 (46)
259 2em7_A Zinc finger protein 224 26.7 34 0.0011 23.4 2.1 24 249-278 10-33 (46)
260 3ghg_B Fibrinogen beta chain; 26.7 1.9E+02 0.0065 31.7 8.8 14 543-556 141-154 (461)
261 2ykt_A Brain-specific angiogen 26.6 4.4E+02 0.015 26.2 10.9 47 475-521 102-152 (253)
262 2enh_A Zinc finger protein 28 26.5 32 0.0011 23.6 1.9 24 249-278 10-33 (46)
263 2eoh_A Zinc finger protein 28 26.4 33 0.0011 23.5 2.0 24 249-278 10-33 (46)
264 1qm9_A Polypyrimidine tract-bi 26.4 79 0.0027 28.3 5.1 45 332-388 121-167 (198)
265 3pgw_A U1-A; protein-RNA compl 26.4 92 0.0032 29.6 5.8 47 333-389 11-62 (282)
266 2a3j_A U1 small nuclear ribonu 26.0 54 0.0019 28.9 3.8 47 333-389 31-82 (127)
267 2eon_A ZFP-95, zinc finger pro 25.8 30 0.001 23.8 1.7 24 249-278 10-33 (46)
268 2ytp_A Zinc finger protein 484 25.7 35 0.0012 23.3 2.1 24 249-278 10-33 (46)
269 3mq7_A Bone marrow stromal ant 25.5 2.4E+02 0.0081 25.8 7.8 33 480-512 29-64 (121)
270 1paa_A Yeast transcription fac 25.4 27 0.00093 21.1 1.3 20 251-276 2-21 (30)
271 2elv_A Zinc finger protein 406 25.2 34 0.0012 21.9 1.8 24 249-278 7-30 (36)
272 2ytf_A Zinc finger protein 268 25.1 36 0.0012 23.1 2.0 24 249-278 10-33 (46)
273 3mjh_B Early endosome antigen 25.0 31 0.0011 25.0 1.6 20 251-276 5-24 (34)
274 2em8_A Zinc finger protein 224 25.0 37 0.0013 23.2 2.0 25 248-278 9-33 (46)
275 2emi_A Zinc finger protein 484 24.8 37 0.0013 23.1 2.0 24 249-278 10-33 (46)
276 2epx_A Zinc finger protein 28 24.6 41 0.0014 22.9 2.2 24 249-278 10-33 (47)
277 2emb_A Zinc finger protein 473 24.6 38 0.0013 22.9 2.0 24 249-278 10-33 (44)
278 2epv_A Zinc finger protein 268 24.4 39 0.0013 22.9 2.1 24 249-278 10-33 (44)
279 3swy_A Cyclic nucleotide-gated 24.3 2.1E+02 0.0072 22.1 6.2 37 490-526 5-41 (46)
280 2go8_A Hypothetical protein YQ 24.3 86 0.0029 28.1 4.8 79 331-414 11-92 (122)
281 3smz_A Protein raver-1, ribonu 24.2 89 0.003 29.8 5.2 45 333-390 24-68 (284)
282 1znf_A 31ST zinc finger from X 24.0 30 0.001 20.4 1.2 22 251-278 1-22 (27)
283 1m1j_C Fibrinogen gamma chain; 24.0 2.5E+02 0.0085 30.1 9.0 56 460-518 32-98 (409)
284 2elz_A Zinc finger protein 224 23.7 38 0.0013 23.2 1.9 24 249-278 10-33 (46)
285 2no2_A HIP-I, huntingtin-inter 23.6 2.9E+02 0.0099 24.3 8.0 25 473-497 51-75 (107)
286 2enc_A Zinc finger protein 224 23.6 39 0.0013 23.0 1.9 24 249-278 10-33 (46)
287 2hl7_A Cytochrome C-type bioge 23.6 23 0.00077 30.4 0.8 11 250-260 25-35 (84)
288 2epz_A Zinc finger protein 28 23.4 41 0.0014 22.9 2.0 24 249-278 10-33 (46)
289 2enf_A Zinc finger protein 347 23.4 40 0.0014 23.0 1.9 24 249-278 10-33 (46)
290 2eq0_A Zinc finger protein 347 23.3 41 0.0014 22.9 2.0 25 248-278 9-33 (46)
291 1s94_A S-syntaxin; three helix 23.3 4.3E+02 0.015 24.2 10.8 77 501-578 78-155 (180)
292 1m1j_A Fibrinogen alpha subuni 23.0 3.2E+02 0.011 30.1 9.5 39 473-511 83-121 (491)
293 1x79_B RAB GTPase binding effe 22.8 4E+02 0.014 24.0 8.7 48 473-520 42-89 (112)
294 2adc_A Polypyrimidine tract-bi 22.8 1.3E+02 0.0044 28.1 6.0 45 332-388 152-198 (229)
295 2elo_A Zinc finger protein 406 22.8 28 0.00097 22.4 1.0 24 249-278 7-30 (37)
296 1njq_A Superman protein; zinc- 22.8 38 0.0013 22.3 1.7 24 249-278 4-27 (39)
297 2yts_A Zinc finger protein 484 22.6 42 0.0014 22.8 2.0 24 249-278 10-33 (46)
298 2en3_A ZFP-95, zinc finger pro 22.6 46 0.0016 22.6 2.2 23 249-277 10-32 (46)
299 4e61_A Protein BIM1; EB1-like 22.6 2.5E+02 0.0086 25.1 7.3 44 478-521 6-49 (106)
300 2ep0_A Zinc finger protein 28 22.6 43 0.0015 22.8 2.0 25 248-278 9-33 (46)
301 3t98_B Nucleoporin NUP58/NUP45 22.5 3.8E+02 0.013 23.2 8.5 40 473-512 16-55 (93)
302 2emg_A Zinc finger protein 484 22.5 40 0.0014 22.9 1.8 24 249-278 10-33 (46)
303 2lvr_A Zinc finger and BTB dom 28.0 18 0.00063 21.8 0.0 23 250-278 2-24 (30)
304 3na7_A HP0958; flagellar bioge 22.3 5.5E+02 0.019 25.0 17.9 46 476-521 32-77 (256)
305 2yti_A Zinc finger protein 347 22.0 41 0.0014 22.9 1.8 24 249-278 10-33 (46)
306 2d1l_A Metastasis suppressor p 22.0 3.5E+02 0.012 27.2 9.2 46 475-520 105-154 (253)
307 2ytb_A Zinc finger protein 32; 21.9 42 0.0014 22.2 1.8 24 249-278 9-32 (42)
308 2ytq_A Zinc finger protein 268 21.8 43 0.0015 22.9 1.9 24 249-278 10-33 (46)
309 2kw0_A CCMH protein; oxidoredu 21.8 22 0.00074 31.0 0.3 11 250-260 22-32 (90)
310 2ept_A Zinc finger protein 32; 21.7 43 0.0015 22.2 1.8 24 249-278 8-31 (41)
311 2em9_A Zinc finger protein 224 21.6 47 0.0016 22.5 2.0 24 249-278 10-33 (46)
312 2elm_A Zinc finger protein 406 21.6 39 0.0013 22.1 1.5 22 249-276 7-28 (37)
313 2em3_A Zinc finger protein 28 21.6 47 0.0016 22.6 2.0 24 249-278 10-33 (46)
314 2em4_A Zinc finger protein 28 21.6 47 0.0016 22.7 2.0 23 249-277 10-32 (46)
315 2el6_A Zinc finger protein 268 21.5 47 0.0016 22.7 2.0 24 249-278 10-33 (46)
316 2ely_A Zinc finger protein 224 21.4 51 0.0018 22.5 2.2 24 249-278 10-33 (46)
317 2eow_A Zinc finger protein 347 21.3 49 0.0017 22.4 2.1 23 249-277 10-32 (46)
318 2e5i_A Heterogeneous nuclear r 21.3 1.3E+02 0.0044 26.7 5.3 43 334-389 28-72 (124)
319 2yrj_A Zinc finger protein 473 21.3 50 0.0017 22.4 2.1 24 249-278 10-33 (46)
320 2en9_A Zinc finger protein 28 21.2 42 0.0014 22.9 1.7 24 249-278 10-33 (46)
321 2emz_A ZFP-95, zinc finger pro 21.1 49 0.0017 22.6 2.0 23 249-277 10-32 (46)
322 2eoz_A Zinc finger protein 473 20.9 38 0.0013 23.2 1.4 23 249-277 10-32 (46)
323 3tyt_A Heterogeneous nuclear r 20.9 1.5E+02 0.005 27.8 5.9 46 333-390 6-53 (205)
324 2emf_A Zinc finger protein 484 20.9 48 0.0016 22.6 2.0 24 249-278 10-33 (46)
325 2xcs_B DNA gyrase subunit B, D 20.8 6.8E+02 0.023 28.7 12.2 58 215-281 319-377 (692)
326 2eom_A ZFP-95, zinc finger pro 20.8 52 0.0018 22.5 2.1 23 249-277 10-32 (46)
327 2lvt_A Zinc finger and BTB dom 26.2 21 0.00071 21.7 0.0 22 251-278 2-23 (29)
328 2eq1_A Zinc finger protein 347 20.7 50 0.0017 22.5 2.0 24 249-278 10-33 (46)
329 2ene_A Zinc finger protein 347 20.7 48 0.0016 22.5 1.9 24 249-278 10-33 (46)
330 2ysp_A Zinc finger protein 224 20.7 39 0.0013 23.0 1.5 24 249-278 10-33 (46)
331 2nps_D Syntaxin-6; vesicle fus 20.6 3.6E+02 0.012 22.2 8.8 40 481-520 38-77 (82)
332 3uk3_C Zinc finger protein 217 20.6 45 0.0016 23.5 1.8 23 249-277 30-52 (57)
333 2ep3_A Zinc finger protein 484 20.6 49 0.0017 22.5 2.0 24 249-278 10-33 (46)
334 2em5_A ZFP-95, zinc finger pro 20.6 51 0.0017 22.5 2.0 24 249-278 10-33 (46)
335 2eme_A Zinc finger protein 473 20.6 48 0.0016 22.5 1.9 24 249-278 10-33 (46)
336 2en2_A B-cell lymphoma 6 prote 20.4 43 0.0015 22.2 1.6 24 249-278 9-32 (42)
337 2eof_A Zinc finger protein 268 20.4 46 0.0016 22.2 1.8 24 249-278 10-33 (44)
338 2lvu_A Zinc finger and BTB dom 25.8 21 0.00073 21.2 0.0 21 251-277 2-22 (26)
339 1wii_A Hypothetical UPF0222 pr 20.2 26 0.0009 30.0 0.5 12 249-260 21-32 (85)
340 1rim_A E6APC2 peptide; E6-bind 20.2 44 0.0015 21.4 1.5 22 251-278 2-23 (33)
341 2eor_A Zinc finger protein 224 20.1 48 0.0017 22.4 1.8 23 249-277 10-32 (46)
342 3pwf_A Rubrerythrin; non heme 20.1 59 0.002 30.6 3.0 28 228-258 118-145 (170)
343 2el5_A Zinc finger protein 268 20.0 47 0.0016 22.0 1.7 24 249-278 8-31 (42)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=4.4e-60 Score=451.41 Aligned_cols=167 Identities=20% Similarity=0.367 Sum_probs=157.4
Q ss_pred CCCCceeecCCeEEEeccccccCCCCcccccChHHHHHHh--hccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHH
Q 007021 322 TEKDHEIVWPPMVIIMNTRLDKDENDKWTGMGNQELLEYF--ILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERL 399 (621)
Q Consensus 322 ~~kDdliVWPWmGII~Nt~te~dddgr~~G~s~~eL~d~l--sgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rL 399 (621)
++++++|||||||||+||+|+.+++|+++|||+++|+++| ++|+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus 3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 6789999999999999999987788999999999999977 89999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCccccccc-ccccccccHHHHHHHHhhhcchhhhHH
Q 007021 400 HKHFAEQGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKT-KQKFEMRSYHEMVVNQIRQMSEDNQQL 478 (621)
Q Consensus 400 ekhFe~qg~GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d~~siGe~-rkkgdLKSisEmv~E~~R~m~k~nklv 478 (621)
|+||+.++|||+||. .++. .+++||||||++|||++.++ ||+| ||+|+||||+||++|..| +++++|
T Consensus 83 ek~Fe~~~~GK~dW~--~~~~-----~~~~lyGW~Ar~dDy~s~~~--iG~~Lrk~gdLKTv~~i~~E~~r---k~~~lv 150 (172)
T 4e8u_A 83 DKAYTVDGHGKKDWL--KKDG-----PKLGLYGWIARADDYNGNNI--IGENLRKTGDLKTIAELTEEEAR---KQELLV 150 (172)
T ss_dssp HHHHHHTTCSHHHHT--CSSS-----CCCSCEEEECBHHHHHSSSH--HHHHHHTTCEEEEHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHcCCCHHHHh--hCCC-----CCCceEEEecccccccCCCh--HHHHHHHcCCcccHHHHHHHHHH---HHHHHH
Confidence 999999999999998 5444 48999999999999999998 9999 999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHh
Q 007021 479 IYLKNRVVKEQRHSKALEATFS 500 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~n 500 (621)
++|+|+|++||++|++||++||
T Consensus 151 ~~L~~~ie~kn~~l~ele~k~~ 172 (172)
T 4e8u_A 151 QNLRQLVEEKKKDMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.93 E-value=2.5 Score=45.34 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhc
Q 007021 599 DAELTQLMEKYS 610 (621)
Q Consensus 599 ~~~l~~lm~k~~ 610 (621)
.++|.+|++|-.
T Consensus 571 ~~~~~~l~~~~~ 582 (597)
T 3oja_B 571 RQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 455667776643
No 3
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.98 E-value=0.42 Score=40.48 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=44.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~r 398 (621)
..+.|-|++..- +.++|++.|+.|.++.|+.++.+.|. +|++.|+|... ..-..|+.
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~ 73 (102)
T 1wez_A 16 HCVHMRGLPYRA---------TENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATH-EDAVAAMA 73 (102)
T ss_dssp CEEEEESCCTTC---------CHHHHHHSSCSCCCSEEEEEESSSSCEEEEEEEECSSS-HHHHHHHT
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHcCceEEEEEECCCCCEeeEEEEEECCH-HHHHHHHH
Confidence 567788987633 56889999999999999999998775 89999999854 33444543
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.41 E-value=9.4 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHH
Q 007021 582 AMRRRHWEEEVELEKGFDAELT 603 (621)
Q Consensus 582 ~~k~~~~~ee~~leke~~~~l~ 603 (621)
.|+.+.=++...|+.|+++|-.
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~~~~ 1077 (1080)
T 2dfs_A 1056 TMEKKLVEETKQLELDLNDERL 1077 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444666677777776644
No 5
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.94 E-value=1.5 Score=36.27 Aligned_cols=49 Identities=16% Similarity=0.384 Sum_probs=39.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++......+++|++.|.|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 34668898753 3577899999999987 5777888888999999999873
No 6
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.61 E-value=1.4 Score=38.14 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=40.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
..+.|-|++..- +..+|++.|+.|....|+.++++.|. +|++.|+|...
T Consensus 17 ~~v~V~nLp~~~---------te~dl~~~F~~~~v~~v~i~~d~~g~~~G~afV~F~~~ 66 (109)
T 2dnn_A 17 LYVSVHGMPFSA---------MENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSP 66 (109)
T ss_dssp HEEEEECCCSSC---------CHHHHHHHTTTSCCCEEEECCCTTCCCCSEEEEECSSH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHhccCCeeEEEEEECCCCCCCeEEEEEECCH
Confidence 468899987533 56789999999977789999988875 89999999873
No 7
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.65 E-value=1.5 Score=37.40 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=37.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--V~~l~g~~G-H~G~aVV~F~k 388 (621)
++.|-|++... +.++|++.|..|..+. |+.++.+.| ++|++.|.|..
T Consensus 17 ~l~V~nLp~~~---------t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~ 66 (114)
T 2cpy_A 17 CAHITNIPFSI---------TKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKN 66 (114)
T ss_dssp EEEEESCCTTS---------CHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSS
T ss_pred EEEEeCcCCcC---------CHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECC
Confidence 46688987533 5678999999998875 888888877 48999999975
No 8
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.36 E-value=1.6 Score=35.96 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=38.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++......++.|++.|.|..
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~ 64 (103)
T 2cqi_A 16 RTLYVGNLSRD---------VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYE 64 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESS
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECC
Confidence 35678898752 35788999999999874 77778777889999999985
No 9
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.09 E-value=2.1 Score=34.53 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=41.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~r 398 (621)
..+.|-|++... +..+|++.|+.|....++..++..|. +|++.|.|.. -..-..|+.
T Consensus 11 ~~l~v~nLp~~~---------t~~~l~~~F~~~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~ 68 (91)
T 2dgw_A 11 HTVKLRGAPFNV---------TEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALK 68 (91)
T ss_dssp CEEEEECCCSSC---------CHHHHHHHHTTSCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHH
T ss_pred cEEEEECCCCCC---------CHHHHHHHHhhCCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHH
Confidence 456788987532 57789999999966678888886664 8999999985 333444444
No 10
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=84.06 E-value=1.6 Score=36.66 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=43.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCCCccchHHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAERL 399 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~rL 399 (621)
.++.|-|++..- +.++|++.|+.|.+ ..|+.++++.|. +|++.|.|.. ...-..|+.+
T Consensus 12 ~~l~V~nLp~~~---------te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 74 (107)
T 2lmi_A 12 FLIRAQGLPWSC---------TMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEK 74 (107)
T ss_dssp CEEEEECCCSSC---------CSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTT
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHh
Confidence 456788987533 46789999999887 568888888774 8999999975 4445556554
No 11
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.95 E-value=1.3 Score=39.40 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=42.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-----eeeeccCCCCC-cceEEEEeCCCccchHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGH-RGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-----kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~ 397 (621)
..+.|-|++..- +..+|++.|+.|+++ .|+.++...|. +|++.|+|...- ....|+
T Consensus 24 ~~v~V~nLp~~~---------te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al 85 (123)
T 2dha_A 24 VIVRMRGLPFTA---------TAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNAL 85 (123)
T ss_dssp CEEEECSCCTTC---------CHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHH
Confidence 567788987533 567899999999874 68888887775 899999998643 233444
No 12
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.62 E-value=2 Score=35.91 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=37.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCCC-cceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--V~~l~g~~GH-~G~aVV~F~k 388 (621)
..+.|-|++... +.++|++.|+.|.++. ++.++...|. +|++.|+|..
T Consensus 16 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~ 66 (104)
T 1wg5_A 16 GFVRLRGLPFGC---------SKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFAS 66 (104)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESS
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECC
Confidence 457788987532 5678999999999875 6677776664 8999999976
No 13
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.36 E-value=1.9 Score=37.14 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=42.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kV~~l~g~~GH-~G~aVV~F~kdwsGf~nA~r 398 (621)
.++.|-|++..- +..+|++.|+.|.+ ..|+.++++.|. +|++.|+|.. -..-..|+.
T Consensus 18 ~~l~V~nLp~~~---------te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~ 79 (118)
T 2db1_A 18 YVVKLRGLPWSC---------SIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALK 79 (118)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGG
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHh
Confidence 457788987532 56789999999987 578888888875 8999999975 344444544
No 14
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=83.34 E-value=1.9 Score=38.61 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=40.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc--eeeeccCCCCC-cceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGPQGH-RGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~--kV~~l~g~~GH-~G~aVV~F~kdw 390 (621)
..+.|-|++..- +.++|++.|+.|..+ .|+.++++.|. +|++.|+|...-
T Consensus 43 ~~lfVgnLp~~~---------te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e 95 (126)
T 2hgm_A 43 GFVRLRGLPFGC---------TKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQE 95 (126)
T ss_dssp CEEEEECCCTTC---------CHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTT
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHH
Confidence 347788987633 567899999999777 78889888875 899999998754
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.33 E-value=4.1 Score=45.20 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 479 IYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 479 ~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
..+.++|..++...++++..|++++..|++..
T Consensus 88 k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrI 119 (562)
T 3ghg_A 88 TNIMEILRGDFSSANNRDNTYNRVSEDLRSRI 119 (562)
T ss_dssp HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 33334444444555555555555555555444
No 16
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=83.21 E-value=1.1 Score=40.74 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=39.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCC-cceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGH-RGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH-~G~aVV~F~k 388 (621)
.++.|-|++..- +.++|++.|+.|.++.|++++++.|. +|++.|+|..
T Consensus 47 ~~lfV~nLp~~~---------te~dL~~~F~~~Gi~~v~i~~d~~g~srGfaFV~F~~ 95 (139)
T 2hgn_A 47 HCVHMRGLPYKA---------TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFAT 95 (139)
T ss_dssp CCEECCSCCTTC---------CHHHHHHHHCSCCCSEEECCCSSSSCSSCCCEEECSH
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEECCCCCCceEEEEEeCC
Confidence 457788987532 57889999999999899999998875 8999999974
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.51 E-value=16 Score=39.12 Aligned_cols=6 Identities=0% Similarity=-0.202 Sum_probs=2.6
Q ss_pred CCCccc
Q 007021 387 ESSAGG 392 (621)
Q Consensus 387 ~kdwsG 392 (621)
.+.|.|
T Consensus 354 ~N~~~~ 359 (597)
T 3oja_B 354 HNDWDC 359 (597)
T ss_dssp SSCEEH
T ss_pred CCCCCC
Confidence 334444
No 18
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=80.65 E-value=1.8 Score=36.95 Aligned_cols=47 Identities=19% Similarity=0.427 Sum_probs=37.8
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kd 389 (621)
+.|-|++.. .+..+|++.|+.|.++ .|+.+....++.|++.|.|..-
T Consensus 8 lfV~nLp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~ 55 (115)
T 4f25_A 8 IFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQ 55 (115)
T ss_dssp EEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCH
T ss_pred EEECCCCCC---------CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCH
Confidence 567788642 3578899999999997 5788888878899999999864
No 19
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=80.40 E-value=3.3 Score=33.41 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=38.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCcc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSAG 391 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kdws 391 (621)
-.+.|-|++.. .+.++|++.|+.|.++ .++....+.|. +|++.|.|...-.
T Consensus 17 ~~l~v~nlp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 69 (95)
T 2ywk_A 17 RTVFVGNLEAR---------VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 69 (95)
T ss_dssp GEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHH
Confidence 35678898752 2567899999999887 46777776665 8999999987543
No 20
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.13 E-value=3.5 Score=34.52 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=37.8
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce---------eeeccCC-CCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGP-QGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------V~~l~g~-~GH-~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+.++|++.|+.|.++. ++..+.+ .|. +|++.|.|..-
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 16 SAIYVQGLNDS---------VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CEEEEcCCCCC---------CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 45778898742 25678999999999987 7777774 344 89999999863
No 21
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.89 E-value=3 Score=35.25 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=38.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCcc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAG 391 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kdws 391 (621)
.+.|-|++.. .+.++|++.|+.|+++ .++......+..|++.|.|...-.
T Consensus 31 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~ 81 (109)
T 2err_A 31 RLHVSNIPFR---------FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSAD 81 (109)
T ss_dssp EEEEESCCTT---------CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHH
T ss_pred EEEEECCCCc---------CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHH
Confidence 4667888642 3578899999999987 577777777789999999987543
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.79 E-value=4.3 Score=33.82 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=36.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++....+.....+.|++.|.|...
T Consensus 23 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~ 71 (109)
T 1x4a_A 23 CRIYVGNLPPD---------IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDP 71 (109)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCH
Confidence 45678898752 35788999999999986444444444789999999763
No 23
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=78.46 E-value=4.3 Score=33.39 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
+-.+.|-|++.. .+..+|++.|+.|.++ .++...++.|. .|++.|.|...
T Consensus 15 ~~~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 66 (105)
T 2dnh_A 15 DRKLFVGMLNKQ---------QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH 66 (105)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCH
Confidence 345678898753 2567899999999886 46677776665 79999999873
No 24
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.63 E-value=3 Score=34.18 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|.++.++.+++ .+.|++.|.|...
T Consensus 20 ~~l~V~nL~~~---------~t~~~l~~~F~~~G~v~~~~~~~--~~~g~afV~f~~~ 66 (97)
T 2e5j_A 20 ADVYVGNLPRD---------ARVSDLKRALRELGSVPLRLTWQ--GPRRRAFLHYPDS 66 (97)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHHTTCCCSEEEEE--TTTTEEEEECSSH
T ss_pred CEEEEeCCCCc---------CcHHHHHHHHHhcCCEEEEEEcC--CCCcEEEEEECCH
Confidence 36778898642 35788999999999988777664 5689999999864
No 25
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.50 E-value=4.5 Score=33.06 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=37.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++...++.|. +|++.|.|...
T Consensus 18 ~~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 68 (100)
T 2do4_A 18 HKLFISGLPFS---------CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENE 68 (100)
T ss_dssp SCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCH
Confidence 35678898752 3578899999999987 46777777554 79999999763
No 26
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=77.05 E-value=5.2 Score=32.73 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=36.2
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdw 390 (621)
|+.+.|-|++.. .+.+.|++.|+.|+++. ++... .++|++.|.|...-
T Consensus 11 ~~~l~V~~Lp~~---------~te~~L~~~F~~~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED---------MTAEELQQFFCQYGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEee---CCCCEEEEEECCHH
Confidence 467788888753 25788999999999864 55554 37899999998743
No 27
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=76.94 E-value=4.6 Score=33.36 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=38.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+.++|++.|..|.++ .++....+.|. .|++.|.|..-
T Consensus 30 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 30 GKLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 35678898652 3577899999999987 57778777775 89999999853
No 28
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.87 E-value=4.8 Score=33.61 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=36.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+.|. +|++.|.|..
T Consensus 17 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 65 (114)
T 2do0_A 17 TVFVANLDYK---------VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQ 65 (114)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECC
Confidence 4668898652 2578899999999886 46777777775 8999999986
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.31 E-value=4.6 Score=33.37 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=39.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCC--C-CcceEEEEeCCCccchHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--G-HRGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~--G-H~G~aVV~F~kdwsGf~nA~ 397 (621)
..+.|-|++.. .+.++|++.|+.|....|+....+. | +.|++.|.|... ..-..|+
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~ 74 (104)
T 1wi8_A 16 YTAFLGNLPYD---------VTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSAL 74 (104)
T ss_dssp EEEEEESCCSS---------CCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHH
Confidence 56778898753 3578899999999855677777764 4 489999999753 2334444
No 30
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=74.86 E-value=4.3 Score=36.54 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=38.5
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCc----ceeeeccCCCCC-cceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA----VRARHSYGPQGH-RGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p----~kV~~l~g~~GH-~G~aVV~F~k 388 (621)
..+.|-|++..- +.++|++.|+.|.. ..|+.++.+.|. +|++.|+|..
T Consensus 45 ~~lfVgnLp~~~---------te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~ 97 (136)
T 2hgl_A 45 FVVKLRGLPWSC---------SVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGS 97 (136)
T ss_dssp CEEEEESCCTTC---------CHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSS
T ss_pred CEEEEeCCCCCC---------CHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECC
Confidence 356788987533 56789999999987 468888888875 8999999985
No 31
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=74.64 E-value=6 Score=33.76 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=37.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++....+.| ++|++.|.|..-
T Consensus 37 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 86 (124)
T 2kt5_A 37 KLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 86 (124)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCH
Confidence 5678888642 3578899999999886 4777777766 489999999863
No 32
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.53 E-value=1.9 Score=36.69 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=37.3
Q ss_pred CeEEEecccccc--CCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDK--DENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~--dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
.+++|.|+.... ..+..+.....++|++.|+.|.++.-..++.. ...|++.|.|...-
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-~~~G~afV~f~~~~ 75 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-HPDGVASVSFRDPE 75 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-CTTCEEEEECSCHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-CCCEEEEEEECCHH
Confidence 468888985422 12222233345789999999998754344433 36899999998653
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.93 E-value=5.7 Score=32.72 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=36.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCC-C-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
-.+.|-|++.. .+.++|++.|+.|....++.+..+. | ++|++.|.|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~ 65 (103)
T 2dng_A 16 YTAYVGNLPFN---------TVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDE 65 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECC
Confidence 45678898753 3578899999999655677777764 4 48999999985
No 34
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.92 E-value=7.8 Score=32.47 Aligned_cols=59 Identities=17% Similarity=0.176 Sum_probs=41.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERLH 400 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kdwsGf~nA~rLe 400 (621)
-.+.|-|++.. .+..+|++.|+.|..+ .++.+..+. | +.|++.|.|.. -..-..|+.|+
T Consensus 26 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~ 87 (114)
T 2cq4_A 26 RTVFCMQLAAR---------IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLT 87 (114)
T ss_dssp TEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcC
Confidence 45668898752 2567899999999886 466666664 3 58999999965 44455566443
No 35
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.86 E-value=4.7 Score=34.63 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=40.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce--eeeccCCCCC-cceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR--ARHSYGPQGH-RGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k--V~~l~g~~GH-~G~aVV~F~kdwsGf~nA~r 398 (621)
.++.|-|++... +..+|++.|+.|.++. +.+.....|. +|++.|.|...- .-..|+.
T Consensus 26 ~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPFEA---------ENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC 85 (124)
T ss_dssp CEEEEECCCTTC---------CHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH
Confidence 467788987532 5678999999999975 3445556665 899999998643 3334443
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.58 E-value=6.7 Score=31.86 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+ .| +.|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 60 (99)
T 1whw_A 10 RLFVRNLSYT---------SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFP 60 (99)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCH
Confidence 4667888642 35678999999999874 6666665 34 479999999873
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.21 E-value=6.9 Score=32.17 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=36.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC--CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP--QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~--~G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|.++. ++.+..+ .| +.|++.|.|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~ 68 (107)
T 2cph_A 16 SKILVRNIPFQ---------ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 68 (107)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCH
Confidence 34668898753 35778999999999874 5666552 33 589999999874
No 38
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=73.09 E-value=3.9 Score=32.95 Aligned_cols=50 Identities=22% Similarity=0.422 Sum_probs=36.6
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
|..+.|-|++.. .+.++|++.|..|.++. ++.+..+ .| ++|++.|+|..-
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~ 67 (95)
T 2ek1_A 15 PTVIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (95)
T ss_dssp CEEEEEECCCTT---------CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCH
Confidence 456778898753 35788999999999875 5555443 34 489999999764
No 39
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=72.96 E-value=0.96 Score=33.04 Aligned_cols=21 Identities=29% Similarity=0.771 Sum_probs=16.7
Q ss_pred eEccCCCCCCCCcccccCchHHhhhcc
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
-||-||.. . |.|.+.|+.|-.
T Consensus 10 qhcrfckk-----k-ysdvknlikhir 30 (37)
T 2elu_A 10 QHCRFCKK-----K-YSDVKNLIKHIR 30 (37)
T ss_dssp CEETTTTE-----E-CSSHHHHHHHHH
T ss_pred HHHHHHHH-----H-HHHHHHHHHHHH
Confidence 48999942 3 889999999954
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=72.42 E-value=6.6 Score=31.37 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.++|++.|+.|.++. ++......-+.|++.|.|...
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~ 58 (92)
T 2dgv_A 10 QIFVRNLPFD---------FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESP 58 (92)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCH
Confidence 4667888642 36788999999998875 455543333589999999863
No 41
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=72.35 E-value=4.7 Score=35.18 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=37.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++......|. +|++.|+|...
T Consensus 97 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~ 146 (175)
T 3nmr_A 97 KLFIGMISKK---------CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 146 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred eEEEcCCCCc---------CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCH
Confidence 4677888642 3578899999999886 46777777776 89999999874
No 42
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=72.20 E-value=3.2 Score=34.48 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=38.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
+++|-|+|.-... ..-.+...|++.|+.|.++. ++..+.+. | ++|++.|.|...
T Consensus 8 ~vfV~nLp~v~~~---~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~ 64 (100)
T 3ns6_A 8 YIVVNGAPVIPSA---KVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSM 64 (100)
T ss_dssp EEEEESCCCCBGG---GHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCcCChH---HHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCH
Confidence 5778898851111 12345788999999999875 77777765 5 489999999864
No 43
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=72.07 E-value=6.8 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=34.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
++.|-|++.. .+..+|++.|+.|+++. ++... .....|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~-~~~~~g~afV~f~~~ 57 (115)
T 3lqv_A 10 ILYIRNLPYK---------ITAEEMYDIFGKYGPIRQIRVGN-TPETRGTAYVVYEDI 57 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEC-STTTTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEee-CCCCCcEEEEEECCH
Confidence 4668888642 35788999999999876 44443 333489999999864
No 44
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.93 E-value=7.3 Score=33.02 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=36.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~G-H~G~aVV~F~k 388 (621)
++.|-|+|.. .+..+|++.|+.|.++. |+....+.| ++|++.|.|..
T Consensus 13 ~lfV~~Lp~~---------~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~ 61 (103)
T 1s79_A 13 SVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDS 61 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESS
T ss_pred EEEEECCCCC---------CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECC
Confidence 4667788653 25788999999999874 777776655 48999999976
No 45
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=71.37 E-value=8.6 Score=34.91 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHH
Q 007021 559 DKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELT 603 (621)
Q Consensus 559 ~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~ 603 (621)
.-||+.+.-+.+.++|.||+|+.-||-.+=+|--++-+++|.-|-
T Consensus 38 ~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lq 82 (115)
T 3vem_A 38 LHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFH 82 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999999987766666666666665443
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=71.28 E-value=8.6 Score=31.38 Aligned_cols=50 Identities=10% Similarity=0.266 Sum_probs=37.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce---------eeeccCCC-C-CcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------V~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
..+.|-|++.. .+..+|++.|+.|..+. ++....+. | ++|++.|.|...-
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~ 74 (99)
T 2la6_A 14 NTIFVQGLGEN---------VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 74 (99)
T ss_dssp SEEEEECCCSS---------CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHH
Confidence 45678888652 35788999999999886 66777643 4 4899999998643
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.18 E-value=8.3 Score=31.65 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=36.5
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|.++ .++....+ .| +.|++.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (105)
T 1x5u_A 16 ATVYVGGLDEK---------VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 67 (105)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCH
Confidence 45778898652 2577899999999887 46666665 34 589999999873
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.72 E-value=8.2 Score=31.06 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=35.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-ee-eeccC-CCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RA-RHSYG-PQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV-~~l~g-~~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .+ +.+.. ..| +.|++.|.|..-
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~ 58 (96)
T 1x5t_A 7 GIFIGNLDPE---------IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 58 (96)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCH
Confidence 4677888753 3578899999999987 45 67766 334 489999999873
No 49
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=70.45 E-value=7.3 Score=31.91 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=40.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+.| ++|++.|.|...-. -..|+.
T Consensus 10 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVR---------MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVD-VQKIVE 68 (102)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCC-HHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHH-HHHHHh
Confidence 34667888642 2577899999999987 4677777666 47999999986443 344443
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.21 E-value=4.6 Score=32.83 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-----CCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-----GHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-----GH~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+. -++|++.|.|..
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~ 59 (98)
T 2cpf_A 7 GLFIKNLNFS---------TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKK 59 (98)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECC
Confidence 4667888642 35788999999999874 66666554 358999999986
No 51
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.80 E-value=9.3 Score=31.31 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++....+. | +.|++.|.|..
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 66 (103)
T 2cqg_A 17 DLIVLGLPWK---------TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 66 (103)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESS
T ss_pred EEEEEcCCCc---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECC
Confidence 4667888652 2577899999999987 466777653 4 48999999976
No 52
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=69.38 E-value=69 Score=33.53 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q 007021 540 NTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 540 ~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~ 610 (621)
..++.+.+.|.|+.-+ -+||.-|..+|-+-++ .+.+.|-+.+++..++.-+.|..++.+|.
T Consensus 324 ~~~e~~~r~e~IS~~~---~~El~rF~~~Rv~Dfk-------~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 324 EADGIRRRCRVVGFAL---QAEMNHFHQRRELDFK-------HMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445666667776554 3688889888876654 46678999999999999999999988774
No 53
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=69.38 E-value=8.9 Score=32.33 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
..+.|-|++.. .+..+|++.|+.|+++ .++...++. | +.|++.|.|..
T Consensus 26 ~~lfV~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~ 76 (109)
T 2rs2_A 26 CKMFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 76 (109)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECC
Confidence 45678888653 2567899999999987 466666653 3 58999999985
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.23 E-value=7.9 Score=31.73 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=36.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhc-cCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFIL-YAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsg-F~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+. |.++ .++.+..+.|. .|++.|.|..-
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~ 61 (104)
T 2dhg_A 11 SLFVGDLTPD---------VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDE 61 (104)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCH
Confidence 4667888642 256789999998 9976 57777776664 89999999863
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=69.21 E-value=9.4 Score=31.38 Aligned_cols=49 Identities=10% Similarity=0.343 Sum_probs=36.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|+++. ++...++. | +.|++.|.|...
T Consensus 24 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 75 (106)
T 1p27_B 24 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 75 (106)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCH
Confidence 45678898752 25778999999999874 56666554 4 489999999863
No 56
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.90 E-value=6.3 Score=33.41 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=36.2
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCC-----CCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ-----GHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~-----GH~G~aVV~F~kd 389 (621)
+.|-|++.. .+.++|++.|+.|.++.++.+.... -++|++.|.|...
T Consensus 11 lfVgnLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 11 VFVGGLPPD---------IDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp EEEECCCTT---------CCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred EEEcCCCCC---------CCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCH
Confidence 557788642 2578899999999999877776654 3489999999874
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.70 E-value=8.7 Score=31.76 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=36.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++..+.+. | +.|++.|.|..--
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (111)
T 1x4h_A 17 TVFIRNLSFD---------SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 68 (111)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH
Confidence 4668898752 35788999999999874 66666654 3 5899999998643
No 58
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=68.57 E-value=9.5 Score=31.84 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|+|.. .+.++|++.|+.|+++. ++....+. | ++|++.|.|..-
T Consensus 21 ~lfV~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~ 71 (99)
T 4fxv_A 21 NLIVNYLPQN---------MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCH
Confidence 4678898753 35788999999999874 66666554 4 489999999864
No 59
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=68.52 E-value=7.6 Score=36.03 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=37.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
..+.|-|++.. .+.++|++.|+.|.++ .|+..+.+.|. .|++.|.|..-
T Consensus 89 ~~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~ 139 (177)
T 2f3j_A 89 AKLLVSNLDFG---------VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERR 139 (177)
T ss_dssp EEEEEECCCSC---------CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCH
Confidence 36778888642 3678899999999887 57777777664 79999999864
No 60
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.38 E-value=16 Score=43.53 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=0.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 492 SKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 492 lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
...||.++.+++.+|....+++..|..+.
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ----------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666555553
No 61
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=68.15 E-value=8.8 Score=32.20 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=36.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+ .| +.|++.|.|..
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 76 (115)
T 2cpz_A 26 ANLFIYHLPQE---------FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 76 (115)
T ss_dssp CCEEEESCCSS---------CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSS
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECC
Confidence 35678898753 2568899999999886 56777765 34 47999999986
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=68.05 E-value=11 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=36.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++...+..| +.|++.|.|..
T Consensus 9 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~ 57 (116)
T 2fy1_A 9 KLFIGGLNRE---------TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFEN 57 (116)
T ss_dssp EEEEECCTTT---------CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECC
Confidence 4667888652 3578899999999887 4677777655 47999999986
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=67.29 E-value=13 Score=29.43 Aligned_cols=50 Identities=22% Similarity=0.509 Sum_probs=36.5
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
-.+.|-|++.. .+...|++.|+.|.++ .++.+..+. | ++|++.|.|...-
T Consensus 12 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 64 (87)
T 3s7r_A 12 GKMFVGGLSWD---------TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 64 (87)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHH
Confidence 35667888642 2578899999999886 466666643 4 4899999998643
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.17 E-value=8.9 Score=30.69 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++..+.+. | ++|++.|.|..-
T Consensus 17 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 67 (95)
T 2cqc_A 17 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 67 (95)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCH
Confidence 4667888652 3577899999999987 466666654 3 489999999863
No 65
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=67.15 E-value=4.6 Score=34.54 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=38.8
Q ss_pred CeEEEeccccccC-CCCcccccChHHHHHHhhccCcc-eeeeccCCCCC----cceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKD-ENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH----RGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~d-ddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH----~G~aVV~F~kdw 390 (621)
.+++|.|+.+..+ .++.+...--.+|++.|+.|+++ .|++.....++ .|++.|+|...-
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~ 70 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF 70 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHH
Confidence 3688999865332 11222223346788888999997 46666665553 699999998853
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.03 E-value=5.6 Score=32.27 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=35.5
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccC-CCC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYG-PQG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g-~~G-H~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+.++|++.|+.|.++. ++.+.. ..| ++|++.|+|...
T Consensus 16 ~~l~v~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 67 (98)
T 2cqp_A 16 TIIKVQNMPFT---------VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESR 67 (98)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCH
Confidence 45678898753 35788999999999875 554443 344 489999999764
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=66.80 E-value=9.7 Score=31.84 Aligned_cols=47 Identities=15% Similarity=0.286 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+ .| ++|++.|.|..
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 66 (115)
T 2dgo_A 17 HVFVGDLSPE---------ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 66 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECC
Confidence 4667888652 35788999999998864 6666664 34 48999999976
No 68
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.67 E-value=8.6 Score=29.54 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--CCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~--GH~G~aVV~F~kdw 390 (621)
.+.|-|+|.. .+.++|++.|+.|+++. ++...++. -++|++.|.|.+.-
T Consensus 2 ~l~v~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 53 (77)
T 1uaw_A 2 KMFIGGLSWQ---------TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 53 (77)
T ss_dssp CEEEESCCSS---------CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH
Confidence 3567788653 25678999999998874 66666543 35899999998643
No 69
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=66.52 E-value=9.9 Score=32.67 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=36.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~G-H~G~aVV~F~kd 389 (621)
++.|-|+|.. .+.++|++.|+.|+++. ++.+..+.| +.|++.|.|...
T Consensus 2 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~ 51 (166)
T 3md3_A 2 VLYVGNLDKA---------ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQS 51 (166)
T ss_dssp EEEEEEEETT---------CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSH
T ss_pred EEEECCCCCc---------CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCH
Confidence 3567888753 25778999999999875 777777755 579999999763
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=66.44 E-value=9.9 Score=29.88 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=36.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--C-CcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--G-HRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~--G-H~G~aVV~F~kdw 390 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++...... + +.|++.|.|...-
T Consensus 5 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~ 58 (88)
T 4a8x_A 5 TKVHIGRLTRN---------VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPD 58 (88)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHH
Confidence 45678888642 35778999999999875 55555443 4 7899999998753
No 71
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=66.41 E-value=7 Score=32.00 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=35.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccC-c-ceeeeccCCC--CCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-A-VRARHSYGPQ--GHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p-~kV~~l~g~~--GH~G~aVV~F~kd 389 (621)
+++|-|+|..- +..+|++.|+.|+ + ..|+.+..+. .++|++.|.|..-
T Consensus 3 ~i~v~nLp~~~---------te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~ 54 (91)
T 2lxi_A 3 IVMLRMLPQAA---------TEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 54 (91)
T ss_dssp EEEEETCCSSC---------CHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCH
Confidence 46788887533 5678999999887 3 4577777654 3589999999764
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=66.37 E-value=8.5 Score=30.32 Aligned_cols=54 Identities=11% Similarity=0.192 Sum_probs=34.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~G-H~G~aVV~F~kd 389 (621)
++.|-|+|...++ + .-.+..+|++.|+.|.++.-..+....| +.|++.|.|...
T Consensus 3 ~l~V~nLp~~~~~--~-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~ 57 (81)
T 2krb_A 3 VIVVDNVPQVGPD--R-LEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASP 57 (81)
T ss_dssp EEEEESCCCCCTT--T-HHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSH
T ss_pred EEEEeCCCCCcHH--H-HHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCH
Confidence 4667888753211 0 1113578999999999975333333444 479999999863
No 73
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.37 E-value=8.7 Score=31.50 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=34.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++.+....-+.|++.|.|..
T Consensus 17 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~ 64 (103)
T 2d9p_A 17 NLYVKNLDDG---------IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSS 64 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECC
Confidence 4668888652 35788999999999874 66666623358999999985
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.98 E-value=13 Score=30.19 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=38.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+. | ++|++.|.|..- ..-..|+.
T Consensus 12 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 70 (99)
T 2dgs_A 12 KIFVGGIPHN---------CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVN 70 (99)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHH
Confidence 3567888652 3577899999999987 466666543 3 589999999763 33344443
No 75
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=65.97 E-value=18 Score=34.85 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=38.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kdw 390 (621)
.+.|-|++.. .+...|++.|+.|+++ .|+.+....|. +|++.|.|...-
T Consensus 98 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 148 (261)
T 3sde_A 98 ALTVKNLSPV---------VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKP 148 (261)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHH
T ss_pred cccccCCCCC---------CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHH
Confidence 5778888642 3578899999999987 57777777774 899999998753
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=65.66 E-value=13 Score=29.27 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+ .| ++|++.|.|...
T Consensus 8 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 58 (89)
T 3ucg_A 8 SIYVGNVDYG---------ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDK 58 (89)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESST
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4667787642 25788999999998864 6666654 34 489999999965
No 77
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.58 E-value=11 Score=31.49 Aligned_cols=49 Identities=31% Similarity=0.398 Sum_probs=37.4
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFES 388 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~k 388 (621)
+-.+.|-|++.. .+..+|++.|+.|..+ .++...++.|. .|++.|.|..
T Consensus 25 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~ 75 (114)
T 1x5o_A 25 PTNLYISNLPLS---------MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMES 75 (114)
T ss_dssp TTEEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESC
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECC
Confidence 456778898752 3577899999999876 46777776654 7999999986
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=65.51 E-value=12 Score=29.43 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++...++ .| ++|++.|.|..
T Consensus 8 ~l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 57 (87)
T 3bs9_A 8 HVFVGDLSPE---------ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 57 (87)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECC
Confidence 4667888642 3578899999999887 46666653 33 48999999976
No 79
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=64.61 E-value=9.2 Score=30.52 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=32.5
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
+.|-|++.. .+..+|++.|+.|.++. ++.... +.|++.|.|...
T Consensus 8 l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~ 52 (88)
T 1wf0_A 8 VFVGRCTGD---------MTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADD 52 (88)
T ss_dssp EEEESCCSS---------SCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCH
Confidence 557787642 35788999999999875 444432 789999999984
No 80
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.60 E-value=15 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=35.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.++|++.|+.|.++. ++....+. | +.|++.|.|..-
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 57 (95)
T 2dnz_A 7 GLYVGSLHFN---------ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 57 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCH
Confidence 4678888652 35788999999998874 66666643 3 589999999873
No 81
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=64.54 E-value=9.7 Score=36.70 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=41.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCccchHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~ 397 (621)
++.|-|+|.. .+..+|++.|+.|+++ .++.+....|.+|++.|.|.. -..-..|+
T Consensus 43 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~ 98 (292)
T 2ghp_A 43 TVLVKNLPKS---------YNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAI 98 (292)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHH
Confidence 5678898753 2577899999999886 477777788889999999985 33334444
No 82
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=64.53 E-value=10 Score=35.52 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=37.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~G-H~G~aVV~F~kdw 390 (621)
-++.|-|++.. .+..+|++.|+.|+++. |+......| +.|++.|+|...-
T Consensus 110 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD---------ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc---------CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 35778898752 25788999999999874 666666666 4899999998743
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.99 E-value=11 Score=30.86 Aligned_cols=47 Identities=21% Similarity=0.128 Sum_probs=35.8
Q ss_pred eEEEeccccccCCCCcccccChHHHH----HHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|+ +.|+.|.++ .++....+.+ +|++.|.|...
T Consensus 11 ~l~V~nL~~~---------~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~ 62 (96)
T 2dgx_A 11 DVQVSNIDYR---------LSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENL 62 (96)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCH
Confidence 4667888643 2466777 899999986 4777777777 99999999864
No 84
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=63.88 E-value=13 Score=32.89 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
+-.+.|-|++.. .+.++|++.|+.|.++ .|+.+..+. | +.|++.|.|..-
T Consensus 39 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 91 (156)
T 1h2v_Z 39 SCTLYVGNLSFY---------TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91 (156)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 456778898742 2578899999999887 567777654 4 479999999864
No 85
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=63.78 E-value=14 Score=31.49 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.+.|++.|+.|.++ .++..+.+. | ++|++.|.|...
T Consensus 8 ~lfV~nL~~~---------~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~ 58 (110)
T 3s8s_A 8 EVTFARLNDN---------VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTST 58 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCH
Confidence 4667888642 3578899999999987 477777765 4 489999999874
No 86
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=63.59 E-value=15 Score=30.43 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007021 486 VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQN 527 (621)
Q Consensus 486 e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~ 527 (621)
+-|.+|+++||.++.++......+..|+..|+..+.....++
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999998888888899999988776555544
No 87
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.49 E-value=13 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+.++|++.|+.|.++ .++....+. | ++|++.|.|..
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 67 (94)
T 2e5h_A 18 TVYVSNLPFS---------LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLD 67 (94)
T ss_dssp SEEEESCCTT---------SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESC
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 4668898742 3577899999999987 466666654 3 58999999986
No 88
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.07 E-value=9.7 Score=31.10 Aligned_cols=46 Identities=17% Similarity=0.300 Sum_probs=34.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~G-H~G~aVV~F~k 388 (621)
-.+.|-|++.. .+.++|++.|+.|..+ +.+....| +.|++.|.|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~g~v--~~~~~~~g~~~g~afV~f~~ 62 (101)
T 2fc9_A 16 KTLVLSNLSYS---------ATEETLQEVFEKATFI--KVPQNQNGKSKGYAFIEFAS 62 (101)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHCSSCSEE--ECCBCSSSCBCSEEEEECSS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCEE--EEEECCCCCEeeEEEEEECC
Confidence 45678898753 3578899999999766 45555555 48999999986
No 89
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.67 E-value=13 Score=30.38 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=35.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+. | ++|++.|+|..
T Consensus 13 ~~l~v~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 63 (102)
T 1x5s_A 13 GKLFVGGLSFD---------TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFEN 63 (102)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSS
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECC
Confidence 35678898752 3577899999999887 466666543 3 58999999976
No 90
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.61 E-value=95 Score=41.46 Aligned_cols=14 Identities=0% Similarity=0.010 Sum_probs=7.3
Q ss_pred HhhhhhHHHHHHHH
Q 007021 574 KFHGEKMDAMRRRH 587 (621)
Q Consensus 574 ~~~~~~~a~~k~~~ 587 (621)
+.=+++.++|+..|
T Consensus 2038 ~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2038 TALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33445566665554
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=62.54 E-value=11 Score=34.02 Aligned_cols=49 Identities=14% Similarity=0.342 Sum_probs=36.9
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~k 388 (621)
.++++|-|++.. .+...|++.|+.|.++. |+.+..+ .| +.|+++|.|..
T Consensus 72 ~~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 123 (165)
T 1rk8_A 72 GWILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 123 (165)
T ss_dssp CEEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESS
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECC
Confidence 367889999752 35788999999999875 5555553 34 48999999985
No 92
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.49 E-value=15 Score=30.73 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+.++|++.|+.|.++ .++.+..+. | ++|++.|.|..
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 68 (116)
T 2cqd_A 19 KIFVGGLPYH---------TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 68 (116)
T ss_dssp EEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECC
Confidence 4668888752 3578899999999887 466666643 3 58999999985
No 93
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.21 E-value=15 Score=30.80 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=36.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+. | +.|++.|.|..
T Consensus 28 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 78 (116)
T 1x4b_A 28 RKLFIGGLSFE---------TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78 (116)
T ss_dssp TEEEEECCTTC---------CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCC
Confidence 45678888753 2567899999999887 567776643 3 58999999986
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=62.14 E-value=8.8 Score=31.62 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=37.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCC--CC-CcceEEEEeCCCccchHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP--QG-HRGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~--~G-H~G~aVV~F~kdwsGf~nA~ 397 (621)
-.+.|-|++... +..+|++.|+.|+...++....+ .| ++|++.|.|.. ...-..|+
T Consensus 20 ~~l~V~nLp~~~---------t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai 78 (100)
T 2j76_E 20 YTAFLGNLPYDV---------TEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSAL 78 (100)
T ss_dssp CEEEESCCSSCC---------SSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHH
Confidence 456677886532 45679999999984456666664 34 48999999985 33344444
No 95
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=61.96 E-value=15 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.072 Sum_probs=33.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
..+.|-|++.. .+.++|++.|+.|.++. ++++.. |++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~ 59 (108)
T 1x4c_A 16 NRVVVSGLPPS---------GSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVR 59 (108)
T ss_dssp CEEEEESCCSS---------CCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECC
Confidence 56778998752 25788999999998864 555544 899999987
No 96
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=61.92 E-value=17 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.358 Sum_probs=35.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|+++. ++...++. | +.|++.|.|...
T Consensus 4 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 54 (96)
T 2x1f_A 4 VVYLGSIPYD---------QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDL 54 (96)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCH
Confidence 3567787642 35788999999999874 66666643 3 489999999864
No 97
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=61.91 E-value=11 Score=32.88 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=36.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCC----CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQG----HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~G----H~G~aVV~F~kd 389 (621)
.+.|-|+|.. .+..+|++.|+.|.++ .++.+..+.+ ++|++.|.|...
T Consensus 5 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~ 57 (175)
T 3nmr_A 5 KMFVGQVPRT---------WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTR 57 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCH
Confidence 3567788653 3577899999999987 4677776655 589999999875
No 98
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=61.77 E-value=12 Score=31.31 Aligned_cols=49 Identities=18% Similarity=0.259 Sum_probs=36.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc---eeeeccCCC-C-CcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~---kV~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
+++|-|++..- +.+.|++.|+.|.++ .|+...++. | ++|++.|.|..--
T Consensus 11 tlfV~nL~~~~---------tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~ 64 (95)
T 2lkz_A 11 TIILRNIAPHT---------VVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAM 64 (95)
T ss_dssp EEEEESCCTTC---------CHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSH
T ss_pred EEEEeCCCCcC---------CHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHH
Confidence 46788886532 577899999999864 567777654 3 4799999998654
No 99
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.43 E-value=11 Score=30.79 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|+++ .++..+.+ .| +.|++.|.|..-
T Consensus 10 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 60 (104)
T 1p1t_A 10 SVFVGNIPYE---------ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60 (104)
T ss_dssp CEEEESCCTT---------SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCH
Confidence 4667888642 3578899999999886 56666664 34 389999999863
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=61.16 E-value=14 Score=31.40 Aligned_cols=49 Identities=10% Similarity=0.333 Sum_probs=36.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
-++.|-|++.. .+..+|++.|..|.++. ++....+ .| +.|++.|.|..-
T Consensus 23 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 74 (126)
T 3ex7_B 23 WILFVTGVHEE---------ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETY 74 (126)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 35778898742 35788999999999875 5555554 34 489999999765
No 101
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=61.06 E-value=16 Score=28.06 Aligned_cols=47 Identities=21% Similarity=0.441 Sum_probs=34.1
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
+.|-|+|.. .+.++|++.|+.|.++ .++....+. | ++|++.|.|.+.
T Consensus 2 l~v~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 51 (75)
T 2mss_A 2 IFVGGLSVN---------TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51 (75)
T ss_dssp EEEECCCSS---------CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCH
T ss_pred EEEecCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 456677642 3578899999999987 456565542 3 589999999874
No 102
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.99 E-value=9.7 Score=31.19 Aligned_cols=49 Identities=18% Similarity=0.358 Sum_probs=36.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++...++ .| +.|++.|.|..-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (103)
T 2cq0_A 16 ATIRVTNLSED---------TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 67 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCH
Confidence 34668898752 3577899999999887 46666664 33 489999999864
No 103
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=60.97 E-value=14 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=34.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+ .| ++|++.|.|...
T Consensus 9 ~l~V~nl~~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 59 (85)
T 3mdf_A 9 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 59 (85)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEECCCCC---------CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCH
Confidence 4668888642 25788999999998864 5555553 33 589999999864
No 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.73 E-value=11 Score=31.00 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCCccchHHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESSAGGYLEAERL 399 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kdwsGf~nA~rL 399 (621)
..+.|-|++.. .+..+|++.|+.|.++ .++.+..+. | ++|++.|.|..- ..-..|+..
T Consensus 17 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWS---------TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTT---------CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 34567788653 3578899999999987 466666643 3 489999999864 334444443
No 105
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=60.73 E-value=18 Score=29.99 Aligned_cols=49 Identities=14% Similarity=0.362 Sum_probs=35.5
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.++.|-|++.. .+..+|++.|+.|+++. ++...++. | +.|++.|.|...
T Consensus 27 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 78 (110)
T 1oo0_B 27 WILFVTSIHEE---------AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 78 (110)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 35668888652 35778999999999874 55555542 3 489999999854
No 106
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.57 E-value=18 Score=29.50 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=36.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++...++. | +.|++.|.|..--
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 66 (103)
T 2dnm_A 14 ITLKVDNLTYR---------TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR 66 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSS
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHH
Confidence 35678898753 35788999999998864 56666554 3 4899999998744
No 107
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=60.27 E-value=16 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=37.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|.++. ++.+..+ .| ++|++.|.|...
T Consensus 105 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED---------TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT---------CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC---------CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 56778898653 35788999999999874 6666664 34 489999999873
No 108
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=60.02 E-value=9.7 Score=35.46 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
.+.|-|++.. .+..+|++.|+.|..+ .+++++...+.+|++.|+|...-
T Consensus 105 ~l~v~nl~~~---------~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 105 NIFIKNLDKS---------IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred cceECCcccc---------cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 3567888643 2578899999999987 47778888788999999997653
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=59.63 E-value=14 Score=31.21 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCCc
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESSA 390 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kdw 390 (621)
+..+.|-|++.. .+.++|++.|+.|.++ .++.++.+ .| +.|++.|.|...-
T Consensus 36 ~~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 89 (124)
T 2jwn_A 36 KRSVYVGNVDYG---------STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 89 (124)
T ss_dssp HTEEEEEEECTT---------CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHH
Confidence 356778888642 3578899999999987 47777763 34 4899999998743
No 110
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=59.28 E-value=17 Score=31.25 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=35.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~k 388 (621)
.+.|-|+|.. .+..+|++.|+.|+++. ++....+ .| ++|++.|.|..
T Consensus 4 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~ 53 (167)
T 1fxl_A 4 NLIVNYLPQN---------MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53 (167)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred eEEEcCCCCC---------CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECC
Confidence 3667888753 25778999999999874 6666655 44 47999999986
No 111
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.13 E-value=61 Score=34.75 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhHHHHHhhcC
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE----------------NRIVKQRTKMQHEQNKEEVKQSIA 536 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE----------------~d~L~~r~k~~h~~~~ee~~q~~~ 536 (621)
..++.+..+.+.+...++..+..+-.|++.+..|++-.+. ..+-.||.++|-.+...++....|
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C 164 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSC 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777777788888888887888888777777765432 112223335555555666666655
Q ss_pred CCC
Q 007021 537 NPK 539 (621)
Q Consensus 537 ~~s 539 (621)
+-+
T Consensus 165 ~~s 167 (390)
T 1deq_A 165 KGS 167 (390)
T ss_pred ccc
Confidence 544
No 112
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=58.77 E-value=10 Score=30.21 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=35.4
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCCc
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESSA 390 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~--GH~G~aVV~F~kdw 390 (621)
+.|-|++.. .+..+|++.|+.|+++ .++....+. .++|++.|.|.+.-
T Consensus 4 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 4 IYVGNLVYS---------ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEECTT---------SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEECCCCCC---------CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 567777642 3567899999999887 567776653 35899999998754
No 113
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=58.68 E-value=16 Score=29.97 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .|+.+..+. | +.|++.|.|..-
T Consensus 15 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 65 (106)
T 2dgp_A 15 KLFIGQIPRN---------LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCER 65 (106)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCH
Confidence 4668898742 3567899999999886 466666554 3 589999999863
No 114
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=58.35 E-value=17 Score=30.88 Aligned_cols=52 Identities=19% Similarity=0.075 Sum_probs=36.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~r 398 (621)
..+.|-|++... +.++|++.|+.|.++. +..+.. |++.|+|.. -..-..|+.
T Consensus 17 ~~l~V~nLp~~~---------t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 17 NRVVVSGLPPSG---------SWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp CCEEEEECCSSC---------CTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESS-HHHHHHHHH
T ss_pred cEEEEeCCCCCC---------CHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 567889987533 4567999999998764 444443 899999987 333444544
No 115
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.14 E-value=12 Score=30.41 Aligned_cols=45 Identities=27% Similarity=0.307 Sum_probs=32.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCC-CC-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~-~G-H~G~aVV~F~k 388 (621)
.+.|-|++.. .+.++|++.|++| +.++.+..+ .| ++|++.|.|..
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~--~~~~~~~~~~~~~~~g~afV~f~~ 63 (102)
T 2fc8_A 17 TLFVKGLSED---------TTEETLKESFDGS--VRARIVTDRETGSSKGFGFVDFNS 63 (102)
T ss_dssp SEEEECCCTT---------CCHHHHHHTSTTC--SEEEEEECSSSCSEEEEEEEECSS
T ss_pred EEEEeCCCCc---------cCHHHHHHHhcCC--eEEEEEecCCCCCcCcEEEEEECC
Confidence 3567888642 3577899999988 466666654 33 48999999986
No 116
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=57.94 E-value=13 Score=30.27 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=36.1
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~r 398 (621)
+.|-|++.. .+.++|++.|+.|.++. ++...+ +.|++.|.|...- .-..|+.
T Consensus 3 l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~ 55 (101)
T 2hvz_A 3 VYVGNLGTG---------AGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPR-DAEDAVR 55 (101)
T ss_dssp EEEECCCSS---------CSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHH-HHHHHHH
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHH-HHHHHHH
Confidence 567787642 35788999999998874 555554 8899999997633 3344444
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=57.85 E-value=17 Score=30.17 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=36.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCC-CcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQG-HRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~G-H~G~aVV~F~kdw 390 (621)
++.|-|++...++. ...+...|++.|+.|+++. ++.. ...| +.|++.|.|..--
T Consensus 17 ~l~V~nLp~~~~~~---~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~ 72 (105)
T 2nlw_A 17 VIVVDNVPQVGPDR---LEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPA 72 (105)
T ss_dssp EEEEESCCCCCTTT---TTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSS
T ss_pred EEEEeCCCcchhhh---hHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHH
Confidence 56788988533220 1114678999999999975 4444 4444 4899999998654
No 118
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=57.70 E-value=18 Score=31.44 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCCc
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESSA 390 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kdw 390 (621)
+..+.|-|++.. .+..+|++.|+.|.++. ++...++ .| ..|++.|.|...-
T Consensus 94 ~~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~ 147 (172)
T 2g4b_A 94 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN 147 (172)
T ss_dssp TTCEEEECCCTT---------CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT
T ss_pred CCEEEEEcCCCc---------CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH
Confidence 567888998752 25788999999999875 6666664 44 3899999998754
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.26 E-value=18 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=30.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++....+. .|++.|.|..
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~ 51 (90)
T 2dnq_A 10 KLFIGNLPRE---------ATEQEIRSLFEQYGKVLECDII-----KNYGFVHIED 51 (90)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECC
Confidence 4567788652 3578899999999987533332 6899999986
No 120
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=57.18 E-value=19 Score=27.97 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=35.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+ .| ++|++.|.|...
T Consensus 3 ~l~V~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 53 (83)
T 3md1_A 3 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 53 (83)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCH
Confidence 4667888642 35788999999998864 6666653 34 489999999864
No 121
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.78 E-value=16 Score=29.74 Aligned_cols=48 Identities=17% Similarity=0.325 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+. | +.|++.|.|..-
T Consensus 14 ~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 2cqb_A 14 VLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 64 (102)
T ss_dssp CEEEESCCSS---------CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 4668888652 35788999999998874 66656533 3 589999999864
No 122
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=56.14 E-value=15 Score=31.76 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=33.3
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
++|-|++..- +.+.|++.|..|.|+.-.++.- |+|++.|+|...
T Consensus 10 L~VgNL~~~~---------te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~ 53 (89)
T 2wbr_A 10 LLLKNLTAQI---------DGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTR 53 (89)
T ss_dssp EEEECCCTTC---------CCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSH
T ss_pred EEEeCCCccC---------CHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCH
Confidence 3478885432 4678999999999987555433 899999999874
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=56.00 E-value=20 Score=30.05 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=36.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--CCcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~--GH~G~aVV~F~kdw 390 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++....+. -++|++.|.|...-
T Consensus 41 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 93 (118)
T 2khc_A 41 CNLFIYHLPQE---------FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 93 (118)
T ss_dssp EEEEEECSCTT---------CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHH
Confidence 35667888642 25788999999999864 56666543 35899999998653
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=55.65 E-value=26 Score=29.88 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=36.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++....+. | ++|++.|.|..-
T Consensus 64 ~~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 115 (140)
T 2ku7_A 64 RVLYVGGLAEE---------VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELA 115 (140)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCH
T ss_pred cEEEEEeCCCC---------CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCH
Confidence 44668898752 35688999999999874 66666533 3 589999999863
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.09 E-value=2.1e+02 Score=38.33 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=17.0
Q ss_pred hhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhH
Q 007021 469 RQMSEDNQQLIYLKNRVVKEQRHSKALEATFSI 501 (621)
Q Consensus 469 R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne 501 (621)
..+.++..+|+-|+.++++++..|++-....++
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~ 1959 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355666666666666555554444443333
No 126
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.72 E-value=80 Score=29.01 Aligned_cols=70 Identities=10% Similarity=0.150 Sum_probs=37.0
Q ss_pred cccHHHHHHHHhhhcchh--------------------------hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 457 MRSYHEMVVNQIRQMSED--------------------------NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 457 LKSisEmv~E~~R~m~k~--------------------------nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
|+.+...+.+.+++|... ...+..|..+|+...+.+..|...+..+.+++..+.
T Consensus 30 L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~ 109 (138)
T 3hnw_A 30 LQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSA 109 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777766632 223334444444555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHh
Q 007021 511 EENRIVKQRTKMQHEQ 526 (621)
Q Consensus 511 EE~d~L~~r~k~~h~~ 526 (621)
.++..|..+.++...+
T Consensus 110 ~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 110 KEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555544444433
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=54.60 E-value=15 Score=28.07 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=37.1
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--CCcceEEEEeCCCccchHHHHH
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~--GH~G~aVV~F~kdwsGf~nA~r 398 (621)
+.|-|++.. .+..+|++.|+.|.++. ++....+. -++|++.|.|.+.- .-..|++
T Consensus 2 l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD---------TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS---------CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456677542 35788999999999874 55555543 35899999998643 3344443
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=54.58 E-value=15 Score=30.52 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
.+.|-|++... .+..+|++.|+.|.++.-..+ +.|++.|.|...-
T Consensus 29 ~l~V~nl~~~~--------~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~ 73 (110)
T 1wf1_A 29 RVFIGNLNTAL--------VKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNER 73 (110)
T ss_dssp EEEECSCCCSS--------CCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSH
T ss_pred EEEEeCCCccc--------CCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHH
Confidence 67788886530 357889999999998754434 6899999997754
No 129
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=54.13 E-value=17 Score=31.85 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~--GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.++|++.|+.|.++ .++.++.+. -..|++.|.|..-
T Consensus 48 ~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 98 (129)
T 2kxn_B 48 CLGVFGLSLY---------TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 98 (129)
T ss_dssp CBCEETCTTS---------CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCH
Confidence 4557888652 3577899999999987 466776654 3589999999764
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.97 E-value=21 Score=28.04 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=38.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++....+. | ++|++.|.|..-- .-..|++
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQPG---------TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS-AAQKAVT 65 (85)
T ss_dssp EEEEESCCTT---------CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHH
Confidence 4667888642 35678999999999874 56666543 3 4899999998643 3344444
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.87 E-value=24 Score=28.53 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=32.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.++|++.|+.|.++. ++...+ .|++.|.|...
T Consensus 19 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~ 63 (97)
T 1why_A 19 RLWVGGLGPN---------TSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESL 63 (97)
T ss_dssp CEEEECCCSS---------CCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCH
Confidence 4667888652 35788999999999875 444432 78999999764
No 132
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=53.59 E-value=26 Score=30.23 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=36.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~k 388 (621)
..+.|-|++.. .+..+|++.|+.|.++. ++....+ .| ++|++.|+|..
T Consensus 90 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~ 140 (168)
T 1b7f_A 90 TNLYVTNLPRT---------ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 140 (168)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CCEEEeCCCCC---------CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECC
Confidence 56788898752 35788999999999874 5666654 34 48999999986
No 133
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=53.52 E-value=41 Score=29.48 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=37.2
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
+..+.|-|++.. .+..+|++.|+.|.++ .++...++ .| +.|++.|.|...
T Consensus 70 ~~~l~v~nl~~~---------~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~ 122 (158)
T 2kn4_A 70 MTSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDK 122 (158)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCH
Confidence 356778888652 3578899999999987 46666664 34 589999999863
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.93 E-value=23 Score=29.93 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=32.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
++.|-|++.. .+..+|++.|+.|.++.-..+- -..|++.|.|..--
T Consensus 12 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~ 57 (111)
T 1whx_A 12 VILAKNLPAG---------TLAAEIQETFSRFGSLGRVLLP---EGGITAIVEFLEPL 57 (111)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCEEEEECC---SSSSCEEEEESCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEe---CCCCEEEEEeCCHH
Confidence 5667888642 3678899999999987533332 15679999998654
No 135
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.28 E-value=22 Score=28.66 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=35.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc--eeeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV--RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~--kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .++.+..+ .| +.|++.|.|..-
T Consensus 11 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~ 62 (99)
T 2div_A 11 SLWMGDLEPY---------MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADL 62 (99)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCH
Confidence 4567788642 3578899999999985 56777665 33 479999999853
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=52.25 E-value=26 Score=28.85 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=31.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++. ...+..+|++.|+.|+.+....+ ..|++.|.|...
T Consensus 24 ~l~V~nLp~--------~~~t~~~L~~~F~~~G~v~~v~i-----~~g~afV~f~~~ 67 (97)
T 2xnq_A 24 RLFIGNLPL--------KNVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDNP 67 (97)
T ss_dssp EEEEESCCS--------SCCCHHHHHHHHGGGSCEEEEEE-----CSSEEEEEESSH
T ss_pred EEEEeCCCc--------ccCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECCH
Confidence 355778763 02357889999999998754333 378999999874
No 137
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=52.19 E-value=24 Score=31.86 Aligned_cols=49 Identities=14% Similarity=0.377 Sum_probs=36.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++.+..+ .| +.|++.|.|...
T Consensus 29 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~ 80 (216)
T 2qfj_A 29 SRVYVGSIYYE---------LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP 80 (216)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCH
Confidence 35778898753 35788999999999874 6666664 34 589999999753
No 138
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=52.04 E-value=27 Score=31.14 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=38.6
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CCC-cceEEEEeCCCcc
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QGH-RGMSVLIFESSAG 391 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~GH-~G~aVV~F~kdws 391 (621)
+..+.|-|++.. .+..+|++.|+.|.++ .++..+++ .|. +|++.|.|...-.
T Consensus 114 ~~~l~v~nl~~~---------~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~ 168 (198)
T 2yh0_A 114 AHKLFIGGLPNY---------LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 168 (198)
T ss_dssp CCEEEEECCCTT---------CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHH
Confidence 356778888652 2578899999999987 56777764 454 8999999987543
No 139
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=51.32 E-value=12 Score=30.21 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=31.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|..|..+++. ...| +.|++.|.|...
T Consensus 18 ~l~V~nL~~~---------~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~ 63 (96)
T 1fjc_A 18 TLLAKNLSFN---------ITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSE 63 (96)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCH
Confidence 4567888642 3577899999998665443 3334 589999999863
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=50.97 E-value=21 Score=30.96 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=33.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccC-cceeeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AVRARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~kV~~l~g~~GH~G~aVV~F~k 388 (621)
..+.|-|++.. .+.++|++.|+.|. .+....+. .....|++.|.|..
T Consensus 29 ~~l~VgnLp~~---------~te~dL~~~F~~~G~~v~~v~i~-~~~~rGfaFV~F~~ 76 (111)
T 2jvr_A 29 YRITMKNLPEG---------CSWQDLKDLARENSLETTFSSVN-TRDFDGTGALEFPS 76 (111)
T ss_dssp EEEEEECSSCC---------CCHHHHHHHHHHHTCCCSEEECS-SCSSSCCEEEEESS
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHHhCCeeEEEEEE-cCCCCCEEEEEECC
Confidence 46788898752 25788999999998 45433332 12478999999986
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.68 E-value=22 Score=29.50 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=33.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++.... .|++.|.|..-
T Consensus 26 ~~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~ 71 (109)
T 1x4g_A 26 CTVYCGGIASG---------LTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTH 71 (109)
T ss_dssp CEEEEECCSSC---------CCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCH
Confidence 35678888642 36788999999999874 555543 78999999874
No 142
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=50.64 E-value=24 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred cCCeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC--CC-cceEEEEeCCC
Q 007021 330 WPPMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ--GH-RGMSVLIFESS 389 (621)
Q Consensus 330 WPWmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~--GH-~G~aVV~F~kd 389 (621)
-...+.|.|++... .+...|++.|+.|.++. ++...... |. +|++.|.|...
T Consensus 209 ~~~~l~v~nlp~~~--------~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 209 EGREIMIRNLSTEL--------LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTTEEEEEEECTTT--------CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCceEEEECCCccc--------CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 34678888987530 35688999999999874 66666655 54 89999999764
No 143
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.63 E-value=25 Score=27.48 Aligned_cols=43 Identities=9% Similarity=0.179 Sum_probs=32.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
++.|-|++.. .+..+|++.|+.|.++. ++... ..|++.|.|..
T Consensus 14 ~l~V~~l~~~---------~t~~~l~~~f~~~G~i~~~~~~~----~kg~afV~f~~ 57 (85)
T 2ytc_A 14 TLYVGGLGDT---------ITETDLRNHFYQFGEIRTITVVQ----RQQCAFIQFAT 57 (85)
T ss_dssp CEEEECCTTT---------SCHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESS
T ss_pred EEEEcCCCCC---------CCHHHHHHHHHhCCCEeEEEEEC----CCCEEEEEECC
Confidence 4667888642 36788999999998864 44443 37899999986
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=50.55 E-value=24 Score=28.63 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=33.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdw 390 (621)
.+.|-|++.. .+..+|++.|+.|..+. ++.. -+.|++.|.|...-
T Consensus 29 ~l~V~nlp~~---------~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~ 74 (101)
T 2la4_A 29 TAYIGNIPHF---------ATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHE 74 (101)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHH
T ss_pred EEEEcCCCcc---------cCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHH
Confidence 5678888642 35788999999999875 4443 35789999998643
No 145
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.26 E-value=29 Score=28.54 Aligned_cols=47 Identities=19% Similarity=0.164 Sum_probs=32.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCc-ce-eeec-cCCC--CCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-VR-ARHS-YGPQ--GHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p-~k-V~~l-~g~~--GH~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.+ +. ++.. .... -++|++.|.|..
T Consensus 10 ~l~V~nLp~~---------~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~ 61 (109)
T 2dis_A 10 RLFIGGIPKM---------KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYES 61 (109)
T ss_dssp EEEEECCCTT---------SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESS
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecC
Confidence 3567788642 357889999999976 54 4444 2322 358999999986
No 146
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=50.23 E-value=50 Score=32.26 Aligned_cols=61 Identities=13% Similarity=0.149 Sum_probs=30.5
Q ss_pred cccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 457 MRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 457 LKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
|-.|...++++++ ..+.+|..|.+++...++.|+..+.....+...|...-++......+.
T Consensus 4 ~~~YK~~~q~ql~---~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 4 LTVYKNSVKQQID---SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4567788888888 999999999998887777777666666666665555555554443333
No 147
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.05 E-value=20 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=34.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHH---HHhhccCcce-eeeccCCC-----CCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELL---EYFILYAAVR-ARHSYGPQ-----GHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~---d~lsgF~p~k-V~~l~g~~-----GH~G~aVV~F~kd 389 (621)
-++.|-|++... +.++|+ +.|+.|.++. ++...... .++|++.|.|...
T Consensus 16 ~~l~V~nLp~~~---------~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 16 NLVFVVGLSQRL---------ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp SCEEEEEECTTT---------CCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred CEEEEECCCCCC---------CHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 356788987533 356788 8999999874 55554443 3568999999874
No 148
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.04 E-value=26 Score=39.05 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHH
Q 007021 569 RDRLIKFHGEKMDAMRRRHW 588 (621)
Q Consensus 569 r~kl~~~~~~~~a~~k~~~~ 588 (621)
|.+|.+..++-+|-+-+++|
T Consensus 219 Ksq~q~~~~e~kal~ei~Qm 238 (562)
T 3ghg_A 219 KSQLQKVPPEWKALTDMPQM 238 (562)
T ss_dssp --------------------
T ss_pred hhhccccCHHHHHhhhhhcE
Confidence 55566666665554444444
No 149
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=50.03 E-value=24 Score=28.65 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=30.7
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~k 388 (621)
+.|-|++.. ..+..+|++.|+.|.++....+ +.|++.|.|..
T Consensus 13 l~V~nlp~~--------~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~ 54 (96)
T 2kvi_A 13 LFIGNLPLK--------NVSKEDLFRIFSPYGHIMQINI-----KNAFGFIQFDN 54 (96)
T ss_dssp EEEESSTTS--------CCCHHHHHHHHTTTCCCCEEEE-----ETTEEEEEESC
T ss_pred EEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEE-----eCCEEEEEECC
Confidence 557788641 2357889999999998754333 37899999986
No 150
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=49.87 E-value=22 Score=29.88 Aligned_cols=49 Identities=12% Similarity=0.273 Sum_probs=35.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|+++ .++....+. | ++|++.|.|..-
T Consensus 27 ~~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 78 (108)
T 2jrs_A 27 MRLYVGSLHFN---------ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 78 (108)
T ss_dssp EEEEEECCCSS---------CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 34667888642 3678899999999987 466666643 3 489999999864
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=49.55 E-value=22 Score=30.02 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=31.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|+++. ++.. .|++.|.|..
T Consensus 32 ~~l~V~nLp~~---------~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~ 74 (108)
T 2jvo_A 32 TRLFVRPFPLD---------VQESELNEIFGPFGPMKEVKIL------NGFAFVEFEE 74 (108)
T ss_dssp SEEEECSSCTT---------CCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSS
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECC
Confidence 45667888642 35778999999999875 4444 7899999986
No 152
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=49.18 E-value=82 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=42.8
Q ss_pred hhHHHHHHHHH-------HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007021 475 NQQLIYLKNRV-------VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (621)
Q Consensus 475 nklv~~L~nqI-------e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~ 526 (621)
.+++.+|-..+ +...+++++|+..+.+....|+.++++.+.|+.++...+..
T Consensus 70 ~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443 78889999999999999999999999999999988877654
No 153
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=49.08 E-value=30 Score=29.94 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=36.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|.++ .++....+. | ++|++.|.|...
T Consensus 88 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 139 (167)
T 2cjk_A 88 GKIFVGGIGPD---------VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 139 (167)
T ss_dssp EEEEEEEECTT---------CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSH
T ss_pred CeEEECCCCCC---------CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCH
Confidence 35778888652 3578899999999887 566666642 4 589999999763
No 154
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=48.62 E-value=19 Score=31.19 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=36.9
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce---eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++... +..+|++.|..|..+. |+.+.++ .| ++|++.|.|..-
T Consensus 25 ~lfV~nL~~~~---------te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~ 77 (131)
T 2m2b_A 25 TIILRNLNPHS---------TMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI 77 (131)
T ss_dssp EEEECSCCTTC---------CSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH
Confidence 46678886533 4678999999998873 6777776 44 489999999886
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=48.54 E-value=24 Score=33.17 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc---eeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV---RARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~---kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~r 398 (621)
++.|-|++.. .+.+.|++.|+.|..+ .++.+....+.+|+++|+|.. ..-=..|+.
T Consensus 125 ~l~v~NLp~~---------~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~ 183 (205)
T 3tyt_A 125 VLHFFNAPLE---------VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLG 183 (205)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHH
T ss_pred eEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHH
Confidence 4667788642 3578899999999875 566665554557999999985 333334443
No 156
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=48.40 E-value=23 Score=30.47 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++ .|+.+..+. | ++|++.|.|..-
T Consensus 44 ~l~V~nLp~~---------~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 94 (139)
T 1u6f_A 44 NLMVNYIPTT---------VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSG 94 (139)
T ss_dssp EEEEESCSTT---------CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4667788642 3567899999999986 466666654 3 489999999863
No 157
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.98 E-value=80 Score=29.47 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=44.0
Q ss_pred hhHHHHHHHHH-------HHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007021 475 NQQLIYLKNRV-------VKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNK 528 (621)
Q Consensus 475 nklv~~L~nqI-------e~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ 528 (621)
.+++.+|-..+ +...+++++||..+.+....|+.+++|.+.|..++...+..+.
T Consensus 70 akqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia 130 (151)
T 1yke_B 70 TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV 130 (151)
T ss_dssp HHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555443 7888999999999999999999999999999998887776443
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=47.95 E-value=37 Score=29.05 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=36.3
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
..+.|-|++.. .+..+|++.|+.|+++ .++..... .| ++|++.|+|...
T Consensus 89 ~~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 89 ANLYVSGLPKT---------MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CcEEECCCCCc---------CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 34678888642 2578899999999987 46666654 44 389999999874
No 159
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=47.84 E-value=2.5e+02 Score=28.95 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhc
Q 007021 541 TEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 541 ~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~leke~~~~l~~lm~k~~ 610 (621)
.++.+.|.|.|+.- --.||.-|..+|-.-++ .+.+.|-+.+++..++.-+.|..+...+.
T Consensus 305 ~~~~~~r~e~is~~---~~~El~rF~~~r~~Dfk-------~~l~~yl~~qi~~~k~~~~~w~~~l~~~~ 364 (366)
T 3dyt_A 305 KQNMVKRVSIMSYA---LQAEMNHFHSNRIYDYN-------SVIRLYLEQQVQFYETIAEKLRQALSRFP 364 (366)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555443 34688888877765443 35678889999999999988888887763
No 160
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.55 E-value=30 Score=28.08 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.+..|..+.-. +|++.|.|..-
T Consensus 17 ~l~V~nLp~~---------~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~ 61 (99)
T 2cpd_A 17 ILYVRNLMLS---------TSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNR 61 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCH
Confidence 5668888652 357789999999965554444332 56999999763
No 161
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=47.49 E-value=13 Score=29.94 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=32.3
Q ss_pred eEEEeccccccCCCCcccccChHHHH----HHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|+ +.|+.|+++....+....-+.|++.|.|..-
T Consensus 10 ~l~V~nLp~~---------~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~ 61 (97)
T 1nu4_A 10 TIYINNLNEK---------IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEV 61 (97)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCH
Confidence 4668888642 2466777 8999999875433332223478999999853
No 162
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=47.10 E-value=47 Score=39.66 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=6.8
Q ss_pred HHHHHHHhcccCcee
Q 007021 230 FKKFFESLESLTVEE 244 (621)
Q Consensus 230 f~K~ye~Lksg~~kv 244 (621)
|.-.-..|-=|.++.
T Consensus 352 ~~ilaaiLhlGni~f 366 (1184)
T 1i84_S 352 LRVVSSVLQLGNIVF 366 (1184)
T ss_dssp HHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhhcCcee
Confidence 344444444554443
No 163
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=46.91 E-value=44 Score=28.42 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=52.8
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CC-cceEEEEeCCCccchHHHHHHHHHHhhcCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GH-RGMSVLIFESSAGGYLEAERLHKHFAEQGT 408 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~--GH-~G~aVV~F~kdwsGf~nA~rLekhFe~qg~ 408 (621)
+++|.|+.+..+ +.-..-.+|++.|+.|+.+ .|++...+. |+ .|++.|+|...- +|.+--+.+. |
T Consensus 10 ~l~l~Nm~~~~~----l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~----~A~~Ai~~ln--G- 78 (105)
T 2pe8_A 10 VVLLRNMVGAGE----VDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVE----SAIKAVVDLN--G- 78 (105)
T ss_dssp EEEEESSSCSCC----C---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHH----HHHHHHHHHT--T-
T ss_pred EEEEEcCCChHH----hhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHH----HHHHHHHHHC--C-
Confidence 688889874211 1122478999999999987 566665543 33 899999998753 2332222221 1
Q ss_pred ChhhhhhhcccccccCCCcceeeeeeccccccCCCC
Q 007021 409 DRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFN 444 (621)
Q Consensus 409 GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d 444 (621)
| |. .++.|+--.|..++|...+
T Consensus 79 -~--~~-----------~Gr~i~v~~a~~~~f~~~~ 100 (105)
T 2pe8_A 79 -R--YF-----------GGRVVKACFYNLDKFRVLD 100 (105)
T ss_dssp -C--EE-----------TTEECEEEECCHHHHHTTC
T ss_pred -C--EE-----------CCcEEEEEEcCHHHhhhhh
Confidence 1 11 2567888888887776543
No 164
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=46.70 E-value=20 Score=28.81 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccC--c-ceeeeccCC-CC-CcceEEEEeCCCccchHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p-~kV~~l~g~-~G-H~G~aVV~F~kdwsGf~nA~ 397 (621)
.+.|-|++.. .+..+|++.|+.|. . ..++....+ .| +.|++.|.|... ..-..|+
T Consensus 3 ~l~V~nL~~~---------~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~-~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSE-ASSKKLM 62 (90)
T ss_dssp -CEEESCCTT---------CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCH-HHHHHHH
Confidence 3567777642 35788999999998 4 356777664 34 489999999753 3333444
No 165
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.19 E-value=3.1e+02 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
.-.+.|..|++.|+.-.+.-+..-.-+..+...|+..+
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~ 101 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDF 101 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33344455555554444444444444444444444444
No 166
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=45.91 E-value=31 Score=32.96 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=39.0
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCC-cceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGH-RGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH-~G~aVV~F~kd 389 (621)
..+.|-|++.... +...|++.|+.|+++ .++...+..|+ +|++.|.|...
T Consensus 185 ~~l~v~nlp~~~~--------~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 185 RCLCVDRLPPGFN--------DVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETA 236 (284)
T ss_dssp SEEEEECCCTTCC--------CHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSH
T ss_pred cEEEEecCCcccC--------CHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCH
Confidence 4577889875321 357899999999986 57778877886 89999999865
No 167
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=45.91 E-value=28 Score=30.08 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=35.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|+|.. .+..+|++.|+.|+++ .++....+ .| ++|++.|.|..-
T Consensus 5 ~l~v~nlp~~---------~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 55 (168)
T 1b7f_A 5 NLIVNYLPQD---------MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSE 55 (168)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCH
Confidence 4677888753 3577899999999987 45666554 34 579999999853
No 168
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.81 E-value=33 Score=27.80 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=33.1
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdw 390 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++... ..|++.|.|...-
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~i~~v~~~~----~kg~afV~f~~~~ 62 (99)
T 2cpj_A 16 SRLFVGNLPPD---------ITEEEMRKLFEKYGKAGEVFIHK----DKGFGFIRLETRT 62 (99)
T ss_dssp TEEEEESCCTT---------CCHHHHHHHTSTTCCCSEEEEET----TTTEEEEECSSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhhcCCeEEEEEec----CCCEEEEEECCHH
Confidence 35678898753 35778999999999874 44432 2789999998643
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=45.74 E-value=31 Score=31.15 Aligned_cols=48 Identities=15% Similarity=0.436 Sum_probs=35.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CCC-cceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QGH-RGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~GH-~G~aVV~F~k 388 (621)
-++.|-|++.. .+.++|++.|+.|..+. ++.+..+ .|. .|++.|+|..
T Consensus 126 ~~l~v~nlp~~---------~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQD---------LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCCc---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 35778888652 35788999999999874 6666654 343 8999999977
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.73 E-value=16 Score=30.35 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=32.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-----eeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-----RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-----kV~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++.. ..-+.|++.|.|...
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR---------VTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCH
Confidence 35678898642 3577899999988876 23333 334579999999863
No 171
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=45.65 E-value=30 Score=30.33 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=33.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+..+|++.|+.|.++. ++...+ ++|++.|.|...
T Consensus 74 ~~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~ 120 (150)
T 2i2y_A 74 CKVYVGNLGNN---------GNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDP 120 (150)
T ss_dssp CEEEEESCCSC---------CSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCH
Confidence 45667888653 25678999999998874 555543 689999999864
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=45.27 E-value=33 Score=29.65 Aligned_cols=49 Identities=31% Similarity=0.472 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-C-CcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-G-HRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-G-H~G~aVV~F~kdw 390 (621)
.+.|-|+|.. .+..+|++.|+.|+++. ++....+. | ++|++.|.|..--
T Consensus 5 ~l~v~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 56 (167)
T 2cjk_A 5 KMFIGGLNWD---------TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS 56 (167)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH
Confidence 4567788653 25778999999999874 66666542 3 5899999998653
No 173
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=45.10 E-value=22 Score=37.79 Aligned_cols=56 Identities=20% Similarity=0.375 Sum_probs=39.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCC-CCC-cceEEEEeCCCccchHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGP-QGH-RGMSVLIFESSAGGYLEAE 397 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~-~GH-~G~aVV~F~kdwsGf~nA~ 397 (621)
-++.|-|++.. ++...|.+.|..|.++ .|+++++. .|+ .|++.|.|..--. -..|+
T Consensus 103 ~~lfV~nL~~~---------~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNYD---------TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 35778898652 3577899999999987 46677664 343 8999999976433 33344
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=44.15 E-value=33 Score=30.07 Aligned_cols=47 Identities=19% Similarity=0.262 Sum_probs=33.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.++.|.|++.. .+..+|++.|+.|..+... ....-++|++.|+|...
T Consensus 100 ~~l~v~nlp~~---------~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 100 RTLLAKNLSFN---------ITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp GEEEEESCCSS---------CCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCH
Confidence 46778898742 2568899999998765544 22234589999999873
No 175
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.42 E-value=56 Score=26.23 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=35.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~r 398 (621)
.+.|-|++.. .+..+|++.|+.|.++.-.+.....|. ++.|.|.. -..-..|+.
T Consensus 10 ~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRG---------VDSAQLSEYFLAFGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCTT---------CCHHHHHHHGGGTSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCCC---------CCHHHHHHHHHhcCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 3557787642 257889999999998764333333444 99999976 333444443
No 176
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=42.85 E-value=11 Score=22.69 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=15.8
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
+.|.|+.|+. . |.....|..|-
T Consensus 1 ~~~~C~~C~k-----~-f~~~~~l~~H~ 22 (29)
T 2m0f_A 1 GPLKCRECGK-----Q-FTTSGNLKRHL 22 (29)
T ss_dssp CCEECTTTSC-----E-ESCHHHHHHHH
T ss_pred CCccCCCCCC-----c-cCChhHHHHHH
Confidence 3689999963 2 55577888884
No 177
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=42.50 E-value=34 Score=30.36 Aligned_cols=47 Identities=13% Similarity=0.281 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~k 388 (621)
.+.|-|++... +..+|++.|+.|.++ .++.+..+. | ++|++.|.|..
T Consensus 15 ~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~ 64 (196)
T 1l3k_A 15 KLFIGGLSFET---------TDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT 64 (196)
T ss_dssp EEEEESCCTTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCC
Confidence 46788987532 567899999999987 466666643 4 58999999976
No 178
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=42.45 E-value=2.4e+02 Score=27.15 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=17.2
Q ss_pred HHHHHHHHH--------HhhhhhHHHHHHHHHhhc
Q 007021 584 RRRHWEEEV--------ELEKGFDAELTQLMEKYS 610 (621)
Q Consensus 584 k~~~~~ee~--------~leke~~~~l~~lm~k~~ 610 (621)
+..||++++ .||.+....|...|.+|.
T Consensus 206 ~~~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~ 240 (305)
T 2efl_A 206 QHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYA 240 (305)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676665 566666666666666663
No 179
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=42.16 E-value=36 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=30.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhcc----C-------cc-eeeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILY----A-------AV-RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF----~-------p~-kV~~l~g~~GH~G~aVV~F~kd 389 (621)
-.+.|-|++.. .+.++|++.|+.| . ++ .++.... .|++.|.|..-
T Consensus 7 ~~l~V~nLp~~---------~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~ 63 (87)
T 2hzc_A 7 RRLYVGNIPFG---------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSV 63 (87)
T ss_dssp GEEEEESCCTT---------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCH
Confidence 34667888652 2578899999988 5 33 3443322 79999999873
No 180
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=41.66 E-value=31 Score=28.23 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=30.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|..|.++....+. .|++.|.|..-
T Consensus 13 ~l~V~nl~~~---------~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~ 55 (103)
T 2dgu_A 13 VLFVRNLANT---------VTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDER 55 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCH
Confidence 3667888642 3578899999999987533332 45999999863
No 181
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=41.59 E-value=26 Score=29.65 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHh-hccCcc-eeeeccCCCCC-cceEEEEeCCCcc
Q 007021 356 ELLEYF-ILYAAV-RARHSYGPQGH-RGMSVLIFESSAG 391 (621)
Q Consensus 356 eL~d~l-sgF~p~-kV~~l~g~~GH-~G~aVV~F~kdws 391 (621)
+|++.| +.|+++ .+++..+..|+ .|++.|.|...-.
T Consensus 42 dl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 42 EVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp HHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred HHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 344445 899997 57777776666 8999999986543
No 182
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.41 E-value=36 Score=29.59 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=33.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
..+-|-|++.. .+..+|++.|+.|..+. |+.+.+ .|++.|+|...
T Consensus 17 ~~LfV~nLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 17 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CEEEECSCCTT---------SCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCH
Confidence 45667888642 35778999999999874 666643 69999999873
No 183
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.38 E-value=40 Score=28.52 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=32.6
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
++.|-|++.. .+..+|++.|+.|..+. |+.+.+ .|+|.|+|...
T Consensus 17 ~l~V~nLp~~---------~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~ 61 (101)
T 2cq1_A 17 VLHIRKLPGE---------VTETEVIALGLPFGKVTNILMLKG----KNQAFLELATE 61 (101)
T ss_dssp EEEEESCCTT---------CCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCH
Confidence 5667788642 35788999999999874 554432 79999999874
No 184
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.18 E-value=46 Score=26.56 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=30.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++.. .+++.|.|..
T Consensus 12 ~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~ 53 (92)
T 2dgt_A 12 KLHVGNISPT---------CTNQELRAKFEEYGPVIECDIV------KDYAFVHMER 53 (92)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESC
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECC
Confidence 4567888642 35788999999999874 4444 3499999986
No 185
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=41.17 E-value=29 Score=30.28 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=52.6
Q ss_pred eEEEeccccccC-CCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhcCCCh
Q 007021 333 MVIIMNTRLDKD-ENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQGTDR 410 (621)
Q Consensus 333 mGII~Nt~te~d-ddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhFe~qg~GR 410 (621)
+++|.|+.+..+ .+..+.-.=-.+|++.|+.|+.+. |.+.- ....|++.|+|...- +|.+--+.+. ||
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~--~~~~G~~fV~f~~~e----~A~~Ai~~ln----G~ 78 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK--NSAQGNVYVKCPSIA----AAIAAVNALH----GR 78 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT--TCTTCCEEEECSSHH----HHHHHHHHHT----TC
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec--CCCcEEEEEEECCHH----HHHHHHHHhC----CC
Confidence 689999876443 223344444567788888999874 44422 224899999998642 3333222221 11
Q ss_pred hhhhhhcccccccCCCcceeeeeeccccccCCC
Q 007021 411 DSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVF 443 (621)
Q Consensus 411 kdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~ 443 (621)
|. .++.|+--.+..++|...
T Consensus 79 --~f-----------~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 79 --WF-----------AGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp --EE-----------TTEECEEEEECHHHHHHH
T ss_pred --EE-----------CCEEEEEEEEcHHHHHHh
Confidence 11 356777777888887654
No 186
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.02 E-value=1.6e+02 Score=26.25 Aligned_cols=39 Identities=8% Similarity=0.178 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 007021 474 DNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (621)
Q Consensus 474 ~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE 512 (621)
.+..|..|..+|+.-......||..+.++.......+..
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~ 79 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKD 79 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444455555555554444444443
No 187
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=40.80 E-value=29 Score=30.45 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC--CCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ--GHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~--GH~G~aVV~F~k 388 (621)
-.+.|-|++.. .+..+|++.|+.|.++ .++....+. -+.|++.|.|..
T Consensus 48 ~~l~V~nLp~~---------~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~ 98 (135)
T 2lea_A 48 TSLKVDNLTYR---------TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 98 (135)
T ss_dssp CCEEEECCCSS---------CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSC
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECC
Confidence 45778898752 2578899999999987 466666542 358999999986
No 188
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=40.71 E-value=4.8 Score=34.41 Aligned_cols=17 Identities=18% Similarity=0.517 Sum_probs=12.1
Q ss_pred eeecCCCCeeEccCCCCC
Q 007021 243 EEINEPARQWHCPACQGG 260 (621)
Q Consensus 243 kvkn~~~~tf~CP~C~gk 260 (621)
+|..+ ...|+|-++.|.
T Consensus 43 KV~R~-KnKWKc~LKdGi 59 (79)
T 1nh2_C 43 KVTRT-KARWKCSLKDGV 59 (79)
T ss_dssp EEEEE-TTEEEEEEEEEE
T ss_pred EEeee-cceEEEEEeeeE
Confidence 45555 678999988653
No 189
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=40.70 E-value=38 Score=32.56 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=39.4
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccC--c-ceeeeccCC-CC-CcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--A-VRARHSYGP-QG-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p-~kV~~l~g~-~G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
.+.|-|++.. .+...|++.|+.|. . ..|+++..+ .| ..||+.|.|...-. -..|+.
T Consensus 70 ~lfVgnL~~~---------~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 70 ALYIGNLTWW---------TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 4667888653 25678999999998 4 467777775 44 48999999986543 344444
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.67 E-value=30 Score=29.53 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=29.2
Q ss_pred cccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 007021 350 TGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 350 ~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdw 390 (621)
...+...|++.|+.|..+. |+.+ .-++|++.|+|...-
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~---~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS---SKKPGTAVVEFATVK 65 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE---SSSSSEEEEEESCHH
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc---cCCCCEEEEEECCHH
Confidence 3467899999999999875 4444 356899999998743
No 191
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.57 E-value=47 Score=28.15 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=32.6
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
.++.|-|++.. .+..+|++.|+.|..+. |+.+. ..|++.|+|..
T Consensus 16 ~~l~V~nLp~~---------~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~ 60 (104)
T 1wex_A 16 PVVHVRGLCES---------VVEADLVEALEKFGTICYVMMMP----FKRQALVEFEN 60 (104)
T ss_dssp SEEEEESCCSS---------CCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECC
Confidence 35778898642 35788999999999875 44443 26899999986
No 192
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=40.43 E-value=81 Score=24.09 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 489 QRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 489 nk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
..+.++||.++.+...++.-..-|+-+|||-.+
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 345667888888888888888899999998553
No 193
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=40.32 E-value=22 Score=29.89 Aligned_cols=44 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred eEccCCCCCCCCcccccCchHHhhhccc-cC---c-----hhhhhHHHHHHHHHH
Q 007021 252 WHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLDE 297 (621)
Q Consensus 252 f~CP~C~gkkkq~D~Y~~l~~LLqHA~g-vG---a-----k~kalHrALa~lLe~ 297 (621)
=.||||..+-..+| |+|.. ||.+=.+ .| . --...||.|++-+..
T Consensus 9 k~C~fc~~~~~~iD-Yknv~-lL~~Fis~~GkIlprr~TGlc~k~QR~l~~AIKr 61 (75)
T 3i1m_R 9 KFCRFTAEGVQEID-YKDIA-TLKNYITESGKIVPSRITGTRAKYQRQLARAIKR 61 (75)
T ss_dssp -----------CCS-TTCHH-HHGGGBCTTCCBCCHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCcCC-cCCHH-HHHHHcCcCCCCcCccccccCHHHHHHHHHHHHH
Confidence 46999987766689 99655 5555333 34 1 223667777776663
No 194
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.91 E-value=14 Score=22.30 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=15.7
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
..|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQ-----R-SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred cCccCCCcCh-----h-hCCHHHHHHHH
Confidence 5799999963 2 55467787774
No 195
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=39.65 E-value=36 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.287 Sum_probs=33.7
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.++.|-|++.. .+..+|++.|+.|..+. ++.+ .+..|++.|+|...
T Consensus 208 ~~l~v~nl~~~---------~~~~~l~~~F~~~G~i~~v~~~---~~~~g~afV~f~~~ 254 (282)
T 3pgw_A 208 HILFLTNLPEE---------TNELMLSMLFNQFPGFKEVRLV---PGRHDIAFVEFDNE 254 (282)
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHhcCCeEEEEEe---cCCCcEEEEEeCCH
Confidence 45778888642 35788999999998875 4444 33368999999874
No 196
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.54 E-value=45 Score=29.45 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=34.8
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCc
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdw 390 (621)
.++.|-|++.. .+..+|++.|+.|..+. |+.+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~---------vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID---------VTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHH
Confidence 45677888642 35788999999999874 666654 699999998743
No 197
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.12 E-value=49 Score=26.45 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=32.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceee--eccCCCCCcceEEEEeCCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRAR--HSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~--~l~g~~GH~G~aVV~F~kd 389 (621)
..+.|-|++.. .+...|++.|+.|.++.-. ....+ .+|.+.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~i~~~~--~~~~afV~f~~~ 64 (96)
T 2e44_A 16 RKLQIRNIPPH---------LQWEVLDSLLVQYGVVESCEQVNTDS--ETAVVNVTYSSK 64 (96)
T ss_dssp CCEEEEEECSS---------SCHHHHHHHHHHHSCEEEEEEECCSS--SSEEEEEEESSH
T ss_pred CEEEEEcCCCC---------CCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEECCH
Confidence 45678888642 2577899999999987533 44433 344589999764
No 198
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=38.45 E-value=49 Score=28.22 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=35.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++.+..+ .| ++|++.|.|...
T Consensus 89 ~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 139 (166)
T 3md3_A 89 NLFVGDLNVN---------VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQ 139 (166)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred eEEECCCCCC---------CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCH
Confidence 5778888642 35788999999999864 6666653 34 489999999864
No 199
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.43 E-value=22 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.0
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCc-ceeeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAA-VRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p-~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.+ +....+. +.|++.|.|...
T Consensus 10 ~l~V~nLp~~---------~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~ 54 (93)
T 2cqh_A 10 KLYIGNLSPA---------VTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQ 54 (93)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCH
Confidence 3567888652 357889999999998 6544442 478999999863
No 200
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.02 E-value=56 Score=38.97 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=6.6
Q ss_pred ceEEEEeCCCccchHH
Q 007021 380 GMSVLIFESSAGGYLE 395 (621)
Q Consensus 380 G~aVV~F~kdwsGf~n 395 (621)
|-+-|-|....-...+
T Consensus 769 G~TKVF~r~g~l~~LE 784 (1184)
T 1i84_S 769 GQSKIFFRTGVLAHLE 784 (1184)
T ss_dssp CSSEEEECTTHHHHHH
T ss_pred cCeEEEEechHHHHHH
Confidence 3334444444333333
No 201
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.90 E-value=76 Score=33.59 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
...+..|..+++...+.+++++..+.++.+.|.+.....++|+..+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666655555555555554433
No 202
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=37.60 E-value=15 Score=22.04 Aligned_cols=23 Identities=17% Similarity=0.544 Sum_probs=16.3
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.+|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~~-----~-f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGR-----S-FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999963 2 555677888843
No 203
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.37 E-value=46 Score=26.45 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++.. .+..+|++.|+.|.++. ++.. .+++.|.|...
T Consensus 11 ~l~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~ 53 (90)
T 2dnp_A 11 KIFVGNVSAA---------CTSQELRSLFERRGRVIECDVV------KDYAFVHMEKE 53 (90)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCH
Confidence 4667888652 35788999999999864 4444 34999999853
No 204
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.17 E-value=2.1e+02 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=11.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007021 492 SKALEATFSIVSEKLRETMEENRIVK 517 (621)
Q Consensus 492 lqeLE~k~ne~s~sL~r~mEE~d~L~ 517 (621)
+++|+-.+-..+.+|+...+|.+.|+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 205
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.11 E-value=1.7e+02 Score=26.18 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
+.+..|..|..+|+.-......||..+.++.......+............++.+.+.+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e 99 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCE 99 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555555555555555555554444444333333333333333333
No 206
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=37.02 E-value=16 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=17.2
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|.+|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 32 (37)
T 1p7a_A 9 IKPFQCPDCDR-----S-FSRSDHLALHRK 32 (37)
T ss_dssp SSSBCCTTTCC-----C-BSSHHHHHHHHG
T ss_pred CCCccCCCCCc-----c-cCcHHHHHHHHH
Confidence 57899999963 2 554678888843
No 207
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.87 E-value=1.4e+02 Score=22.89 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=35.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~ 518 (621)
+-...|..++.++......++++..+++.+...|+.+.+++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888888888888888888888888777643
No 208
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=36.80 E-value=6.8 Score=42.22 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCCCC
Q 007021 120 GRVNAR 125 (621)
Q Consensus 120 ~~~~~~ 125 (621)
++|..|
T Consensus 296 ~~~~~R 301 (417)
T 2ayu_A 296 TTKQVR 301 (417)
T ss_dssp ------
T ss_pred CCCccc
Confidence 344444
No 209
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=36.17 E-value=38 Score=29.42 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceee---ecc----CCCC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRAR---HSY----GPQG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~---~l~----g~~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+...|++.|+.|.++... +.+ ...| +.|++.|.|..-
T Consensus 47 ~l~V~nLp~~---------~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~ 102 (143)
T 3egn_A 47 RIYVKNLAKH---------VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNE 102 (143)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCH
Confidence 4678888642 3578899999999886431 111 1233 589999999754
No 210
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=35.37 E-value=29 Score=29.96 Aligned_cols=45 Identities=24% Similarity=0.279 Sum_probs=27.6
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhccc-cC---c-----hhhhhHHHHHHHHH
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAKT-KG---S-----KRVKLHRELAELLD 296 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~g-vG---a-----k~kalHrALa~lLe 296 (621)
..=.||||..+-..+| |+|. +||.+=.+ .| . --...||.|++-+.
T Consensus 18 r~k~C~~c~~~~~~iD-YKnv-~lL~~Fise~GkIlprriTGlc~k~QR~l~~AIK 71 (88)
T 2vqe_R 18 RKAKVKATLGEFDLRD-YRNV-EVLKRFLSETGKILPRRRTGLSGKEQRILAKTIK 71 (88)
T ss_dssp CSCCTTTSCCCEETTC-TTCH-HHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCccCCCCCcCC-cCCH-HHHHHHcccCCCCCchhhcCCCHHHHHHHHHHHH
Confidence 3346999987655579 9966 56665443 34 1 22356677766665
No 211
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=34.66 E-value=2.5e+02 Score=25.03 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=34.8
Q ss_pred ccHHHHHHHHhhhcchhhhHHHHHH-----HHHHHHHHhHHHHHH----HHhHHHHHHHHHHHHHHHHHH
Q 007021 458 RSYHEMVVNQIRQMSEDNQQLIYLK-----NRVVKEQRHSKALEA----TFSIVSEKLRETMEENRIVKQ 518 (621)
Q Consensus 458 KSisEmv~E~~R~m~k~nklv~~L~-----nqIe~knk~lqeLE~----k~ne~s~sL~r~mEE~d~L~~ 518 (621)
-+|..+..|...-|||+.-+-.||. .+++..+.+++.+.. ++.+....|+++-.||..|++
T Consensus 17 e~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 17 ETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888776666664 345555555555433 333333444444444444443
No 212
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=34.24 E-value=51 Score=29.83 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=34.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccC--cc-eeeeccCC-CC-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYA--AV-RARHSYGP-QG-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~--p~-kV~~l~g~-~G-H~G~aVV~F~kd 389 (621)
.+.|-|++.. .+.++|++.|+.|. .+ .|+...++ .| ..|++.|.|...
T Consensus 57 ~lfVgnLp~~---------~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~ 109 (156)
T 3n9u_C 57 AVYVGSFSWW---------TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASE 109 (156)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCH
Confidence 5667787642 35788999999998 33 56666664 34 489999999753
No 213
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.19 E-value=60 Score=27.28 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=29.5
Q ss_pred ccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhH
Q 007021 454 KFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSI 501 (621)
Q Consensus 454 kgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne 501 (621)
.|.|+-++++.....+++...+.++.-|..+|..+...+++|...++.
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666665555544466666777777777777777766666554
No 214
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.81 E-value=19 Score=23.20 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=17.1
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|..
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2els_A 7 GKIFTCEYCNK-----V-FKFKHSLQAHLR 30 (36)
T ss_dssp CCCEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCCEECCCCCc-----e-eCCHHHHHHHHH
Confidence 57899999963 2 554677878843
No 215
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=33.65 E-value=1.8e+02 Score=27.27 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHhhH-------HHHHhhcCCCCChhHHHHHHH-HH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKL-RETMEENRIVKQRTKMQHEQNK-------EEVKQSIANPKNTEDYKLRAE-EI 551 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL-~r~mEE~d~L~~r~k~~h~~~~-------ee~~q~~~~~s~~e~~r~~~E-~i 551 (621)
|...+..-+.++..|..++.=.+..| .++.++...|+.+....+++.+ +|+++. -.-.+|++|.+++ -+
T Consensus 64 l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~--l~~~~EelR~kl~P~~ 141 (165)
T 1gs9_A 64 MDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAM--LGQSTEELRVRLASHL 141 (165)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--TTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 55666666677777776666555443 3444555666665544444333 333322 2445788988887 44
Q ss_pred hhhhhhhhHhHHHH
Q 007021 552 AKFITVQDKEMEEF 565 (621)
Q Consensus 552 ~~f~~~q~kem~~f 565 (621)
..+.+-..++|++|
T Consensus 142 eeL~~~~~~~~eeL 155 (165)
T 1gs9_A 142 RKLRKRLLRDADDL 155 (165)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 44444444455544
No 216
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=32.96 E-value=15 Score=30.01 Aligned_cols=57 Identities=18% Similarity=0.012 Sum_probs=37.8
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCC--CCcceEEEEeCCCccchHHHHH
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQ--GHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~--GH~G~aVV~F~kdwsGf~nA~r 398 (621)
-.+.|-|++.. .+..+|++.|+.|.++..+.+.... -+.|++.|.|... ..-..|+.
T Consensus 18 ~~l~V~nLp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 76 (101)
T 1fj7_A 18 FNLFIGNLNPN---------KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESA-EDLEKALE 76 (101)
T ss_dssp EEEEEECCCTT---------SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCH-HHHHHHHh
Confidence 35778898652 3578899999998887554443322 3589999999863 33444444
No 217
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.78 E-value=21 Score=21.48 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=16.1
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
..|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGK-----R-FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCC-----E-ESCHHHHHHHHT
T ss_pred cCccCCCCCc-----c-cCCHHHHHHHHH
Confidence 5799999963 2 554678888843
No 218
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=32.69 E-value=42 Score=29.33 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=53.7
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCC-----CC-cceEEEEeCCCccchHHHHHHHHHHhh
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQ-----GH-RGMSVLIFESSAGGYLEAERLHKHFAE 405 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~-----GH-~G~aVV~F~kdwsGf~nA~rLekhFe~ 405 (621)
+++|.|+.+..+=++ .-..+|++.|+.|+++. |++.-.+. ++ .|++.|+|... .+|.+--+.+.
T Consensus 22 vl~L~Nm~~~~el~d----dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~----e~A~~Ai~~Ln- 92 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDD----DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA----SETHKAIQALN- 92 (118)
T ss_dssp EEEEESCSCGGGCCT----THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSH----HHHHHHHHHHT-
T ss_pred EEEEECCCCHHHHHH----HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCH----HHHHHHHHHHC-
Confidence 588899865322111 12578999999999975 65555443 33 59999999875 23433322222
Q ss_pred cCCChhhhhhhcccccccCCCcceeeeeeccccccCCCCc
Q 007021 406 QGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQ 445 (621)
Q Consensus 406 qg~GRkdW~~~~r~~~~~pG~k~~LYGWlAradDyd~~d~ 445 (621)
|| |. .++.|..-.+..++|...+.
T Consensus 93 ---Gr--~f-----------~GR~i~v~~~~~~~f~~~~~ 116 (118)
T 3ue2_A 93 ---GR--WF-----------AGRKVVAEVYDQERFDNSDL 116 (118)
T ss_dssp ---TC--EE-----------TTEECEEEEECHHHHHTTCC
T ss_pred ---CC--EE-----------CCcEEEEEEcChHhcccccc
Confidence 11 22 25677777788888876543
No 219
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=31.92 E-value=3e+02 Score=25.86 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQH 524 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h 524 (621)
...+..|...|..-...++.||.+-..-+.+-....+++..|..+.|+.-
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666777777777777766666677777766666543
No 220
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.88 E-value=21 Score=21.51 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=15.4
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
+|.|+.|+. . |.....|..|-.
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPK-----R-FMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSC-----E-ESCSHHHHHHHT
T ss_pred CccCCCCCc-----h-hCCHHHHHHHHH
Confidence 589999963 2 554667888843
No 221
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=31.70 E-value=2.7e+02 Score=24.50 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=27.8
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 007021 468 IRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS 503 (621)
Q Consensus 468 ~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s 503 (621)
++|-.+-..+++.|..+-+..++++-+||.++.++-
T Consensus 24 ~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~L 59 (101)
T 1d7m_A 24 IKQKDQLNSLLASLESEGAEREKRLRELEAKLDETL 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677788888888899999999999988754
No 222
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.14 E-value=1.9e+02 Score=31.60 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 007021 454 KFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVK--------QRTKMQHE 525 (621)
Q Consensus 454 kgdLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~--------~r~k~~h~ 525 (621)
+.+|..+.+++.+-.+.-+..-++|..|+..++.+++.++.++..+++.+..|++.......+. +..+..++
T Consensus 99 ~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~ 178 (464)
T 1m1j_B 99 KPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVID 178 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q ss_pred hhHHHHHhh
Q 007021 526 QNKEEVKQS 534 (621)
Q Consensus 526 ~~~ee~~q~ 534 (621)
++.+.|+++
T Consensus 179 ~l~~ki~~l 187 (464)
T 1m1j_B 179 SLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 223
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.94 E-value=22 Score=21.13 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=14.1
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
.|.|+.|+.. |.....|..|-
T Consensus 2 ~~~C~~C~~~------f~~~~~l~~H~ 22 (29)
T 2m0e_A 2 EHKCPHCDKK------FNQVGNLKAHL 22 (29)
T ss_dssp CCCCSSCCCC------CCTTTHHHHHH
T ss_pred CCcCCCCCcc------cCCHHHHHHHH
Confidence 5889999632 44455777774
No 224
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.66 E-value=22 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=16.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
..+|.|+.|+. . |.....|..|-
T Consensus 7 ~~~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elr_A 7 GKTHLCDMCGK-----K-FKSKGTLKSHK 29 (36)
T ss_dssp CSSCBCTTTCC-----B-CSSHHHHHHHH
T ss_pred CCCeecCcCCC-----C-cCchHHHHHHH
Confidence 67899999963 2 55466787874
No 225
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=30.49 E-value=31 Score=37.58 Aligned_cols=36 Identities=17% Similarity=0.355 Sum_probs=28.5
Q ss_pred ChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 007021 353 GNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 353 s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
|-.+|.++|+.|+|+.-.+.|-..| -++||+|...-
T Consensus 65 ~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~ 100 (464)
T 3pq1_A 65 SENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKE 100 (464)
T ss_dssp --CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---
T ss_pred CHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHH
Confidence 5678999999999999999998888 59999999853
No 226
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=30.49 E-value=1.9e+02 Score=24.48 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEAT 498 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k 498 (621)
..+..|+..+++.....++||.+
T Consensus 21 eel~~lke~l~k~e~~rkele~~ 43 (89)
T 3bas_A 21 KQMDKMKEDLAKTERIKKELEEQ 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333334444333
No 227
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=30.45 E-value=24 Score=21.11 Aligned_cols=22 Identities=27% Similarity=0.461 Sum_probs=15.2
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.|.|+.|+. . |.....|..|-.
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H~~ 23 (30)
T 1klr_A 2 TYQCQYCEF-----R-SADSSNLKTHIK 23 (30)
T ss_dssp CCCCSSSSC-----C-CSCSHHHHHHHH
T ss_pred CccCCCCCC-----c-cCCHHHHHHHHH
Confidence 589999963 2 444668888843
No 228
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.42 E-value=25 Score=22.74 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCeeEccCCCCCCCCcccccCc-hHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGL-QPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l-~~LLqHA 277 (621)
...|.|+.|+. . |.-. ..|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~~L~~H~ 30 (37)
T 2elp_A 7 GRAMKCPYCDF-----Y-FMKNGSDLQRHI 30 (37)
T ss_dssp CCCEECSSSSC-----E-ECSSCHHHHHHH
T ss_pred CCCeECCCCCh-----h-hccCHHHHHHHH
Confidence 57899999963 2 5534 6787774
No 229
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.41 E-value=23 Score=22.67 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=16.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elt_A 7 GKPYKCPQCSY-----A-SAIKANLNVHL 29 (36)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHH
Confidence 56899999963 2 55466777774
No 230
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=30.34 E-value=3.8e+02 Score=25.83 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHHHHhh
Q 007021 594 LEKGFDAELTQLMEKY 609 (621)
Q Consensus 594 leke~~~~l~~lm~k~ 609 (621)
||.+...-|..+|.+|
T Consensus 217 lee~r~~~lk~~l~~~ 232 (301)
T 2efk_A 217 MDERRATRLGAGYGLL 232 (301)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444455555544
No 231
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.10 E-value=1.7e+02 Score=24.70 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=34.7
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQ 533 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q 533 (621)
..++.||..+..+.-++.|+|-|.....+|.|.........++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999999888888887776665555444
No 232
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=29.95 E-value=21 Score=21.40 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=14.4
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
.|.|+.|+. . |.....|..|-
T Consensus 2 ~~~C~~C~~-----~-f~~~~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTR-----A-FARQEHLKRHY 22 (29)
T ss_dssp CCBCTTTCC-----B-CSSHHHHHHHH
T ss_pred CeECCCCCc-----c-cCCHHHHHHHH
Confidence 589999963 2 44466777774
No 233
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.64 E-value=29 Score=23.50 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=18.0
Q ss_pred CCCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 248 ~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.+..|.|+.|+. . |.....|..|..
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2yu5_A 9 GENPFKCSKCDR-----V-FTQRNYLVQHER 33 (44)
T ss_dssp CCCSEECSSSSC-----E-ESSSHHHHHHHH
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHhH
Confidence 367899999963 2 554678888854
No 234
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=29.61 E-value=57 Score=25.91 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=30.1
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kd 389 (621)
+.|-|++.. .+.++|++.|+.| ++ .++.. -+.|++.|.|...
T Consensus 8 l~V~nLp~~---------~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~ 50 (88)
T 1wg1_A 8 ILVKNLPQD---------SNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNG 50 (88)
T ss_dssp EEEESCCSS---------CCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCH
T ss_pred EEEeCCCCC---------CCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCH
Confidence 567788642 3578899999999 54 34442 5689999999753
No 235
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=28.96 E-value=3.4e+02 Score=24.83 Aligned_cols=101 Identities=20% Similarity=0.179 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHH-------HHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007021 460 YHEMVVNQIRQMSEDNQQLIYLKNRVVK-------EQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEVK 532 (621)
Q Consensus 460 isEmv~E~~R~m~k~nklv~~L~nqIe~-------knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~ 532 (621)
|++|-..... ..++-|.-|+|+|.+ +.++.++|=-......+.-+-. .+.+|+- ..+.++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVA---IRNIRRD-------And~lK 68 (121)
T 3lf9_A 2 INEIKKDAQE---RMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVA---VRNIARD-------AANDLA 68 (121)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-------HHHHHH
T ss_pred chHHHhhHHH---HHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHhHH-------HHHHHH
Confidence 5666666555 567788899988864 3344444432222211111100 1222221 123344
Q ss_pred hhcCC-CCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Q 007021 533 QSIAN-PKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLI 573 (621)
Q Consensus 533 q~~~~-~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~ 573 (621)
.+.-+ .-+..+.+.-.++|++.++--++++.++.+.+++=|
T Consensus 69 Kl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~KEKEI 110 (121)
T 3lf9_A 69 ALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAAKEKEL 110 (121)
T ss_dssp HGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 334445554556999999999999999999987654
No 236
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.92 E-value=5.1e+02 Score=26.94 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=13.9
Q ss_pred HHHhhhhhhhhHhHHHHHHHHHHHHH
Q 007021 549 EEIAKFITVQDKEMEEFVAARDRLIK 574 (621)
Q Consensus 549 E~i~~f~~~q~kem~~f~~er~kl~~ 574 (621)
+.|.++++-+..-..+++.||++.++
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (487)
T 3oja_A 410 QLLRAIVKRYEEMYVEQQSVQNNAIR 435 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 45555555555445555556665443
No 237
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.87 E-value=18 Score=21.94 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=15.4
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
.+|.|+.|+. . |.....|..|-
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRA-----G-CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTE-----E-ESCHHHHHHHH
T ss_pred cCcCCCCCCc-----c-cCCHHHHHHHH
Confidence 4799999962 2 55466777774
No 238
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.80 E-value=27 Score=23.74 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=16.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~ 32 (44)
T 2eou_A 10 KTTSECQECGK-----I-FRHSSLLIEHQ 32 (44)
T ss_dssp SCCCCCTTTCC-----C-CSSHHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 239
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=28.66 E-value=82 Score=29.09 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=35.5
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcc-eeeeccCCC-C-CcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQ-G-HRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~-G-H~G~aVV~F~kd 389 (621)
++.|-|++... +.++|++.|+.|.++ .|+.+..+. | +.|++.|.|..-
T Consensus 17 tlfVgnLp~~~---------te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~ 67 (213)
T 4f02_A 17 SLYVGDLHPDV---------TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 67 (213)
T ss_dssp EEEEESCCTTC---------CHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCH
Confidence 35678887532 567899999999987 466666543 3 589999999864
No 240
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.65 E-value=30 Score=23.68 Aligned_cols=24 Identities=17% Similarity=0.530 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eoy_A 10 EKCFKCNKCEK-----T-FSCSKYLTQHER 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESSSHHHHHHHT
T ss_pred CCCEECcCCCC-----c-CCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 241
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.60 E-value=27 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.448 Sum_probs=16.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 28 (35)
T 2elx_A 5 SSGYVCALCLK-----K-FVSSIRLRSHIR 28 (35)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCeECCCCcc-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554667777743
No 242
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.58 E-value=2e+02 Score=26.93 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007021 456 EMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKM 522 (621)
Q Consensus 456 dLKSisEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~ 522 (621)
|+|.+-|++..--. .+.+|.+|+..|-.-.+.|+.=.-+..++-.|..++--||+.|.+|+.+
T Consensus 96 DiRKLrELEADLKE----KDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~m 158 (167)
T 4gkw_A 96 DMRKLGELEADLKE----KDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAH 158 (167)
T ss_dssp HHHHTHHHHHTHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
No 243
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.50 E-value=4.2e+02 Score=25.82 Aligned_cols=34 Identities=3% Similarity=-0.027 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETM 510 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~m 510 (621)
.+..|.+++..-...+++|+..+......+...-
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~ 52 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE 52 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333
No 244
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.30 E-value=57 Score=27.81 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=37.9
Q ss_pred CeEEEecccc-ccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHh
Q 007021 332 PMVIIMNTRL-DKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFA 404 (621)
Q Consensus 332 WmGII~Nt~t-e~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhFe 404 (621)
.++-|-|++. . .+..+|++.|+.|..+. |+.+.+ .|++.|+|...- +|.+--+++.
T Consensus 16 ~~l~V~nLp~~~---------~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~----~A~~Ai~~l~ 73 (102)
T 1x4d_A 16 RVVHIMDFQRGK---------NLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTE----DAQAAVDYYT 73 (102)
T ss_dssp CEEEEESCCCSS---------SHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHH----HHHHHHHHHH
T ss_pred CEEEEeCCCCCc---------CCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHH----HHHHHHHHHc
Confidence 4566889875 2 24677999999999874 666643 379999998754 4544444443
No 245
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=34.21 E-value=12 Score=31.40 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce---------eeeccCCC-C-CcceEEEEeCCCccchHHHHH
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR---------ARHSYGPQ-G-HRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k---------V~~l~g~~-G-H~G~aVV~F~kdwsGf~nA~r 398 (621)
+.|-|++... +..+|++.|+.|.++. ++....+. | ..|++.|.|...-. -..|+.
T Consensus 10 l~V~nLp~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 75 (116)
T 2lcw_A 10 IFVQGLGENV---------TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS-AKAAID 75 (116)
Confidence 4567776432 4567889999999876 56666543 3 48999999986443 234443
No 246
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.12 E-value=29 Score=22.08 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=17.2
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 5 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 28 (35)
T 1srk_A 5 KRPFVCRICLS-----A-FTTKANCARHLK 28 (35)
T ss_dssp CSCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeeCCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554678888854
No 247
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=27.87 E-value=2.5e+02 Score=27.13 Aligned_cols=107 Identities=8% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------------HHhhcCCC
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE-----------------VKQSIANP 538 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee-----------------~~q~~~~~ 538 (621)
+-+..-...+....+++.+++..+.....+|...+++..+|..+...+..+...+ +.+++..+
T Consensus 65 q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS 144 (192)
T 2p22_C 65 TDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEES 144 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q ss_pred CChhHHHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Q 007021 539 KNTEDYKLRAEEIAKFITVQ--DKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVEL 594 (621)
Q Consensus 539 s~~e~~r~~~E~i~~f~~~q--~kem~~f~~er~kl~~~~~~~~a~~k~~~~~ee~~l 594 (621)
. +-...|.+ . +.++..|+..=...++..--+++++- -|.|..+|
T Consensus 145 ~---------~l~~~F~~-~~~e~dv~~Fl~~y~~~R~~yH~RreK~~--rw~e~~~~ 190 (192)
T 2p22_C 145 S---------QLETTTRS-IDSADDLDQFIKNYLDIRTQYHLRREKLA--TWDKQGNL 190 (192)
T ss_dssp H---------HHHHSCSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCSCB
T ss_pred H---------HHHHHHcC-CcccchHHHHHHHHHHHHHHHHHHHHHHH--HHHhcccc
No 248
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=27.85 E-value=78 Score=32.42 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQH 524 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h 524 (621)
-++..+..|.++|..-.+++..+|.+.++...++.-...|...+..-+|.+|
T Consensus 213 yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T 2yo3_A 213 YTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIKLHH 264 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 5788999999999999999999999999999999888877777666666655
No 249
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=27.67 E-value=3.2e+02 Score=24.08 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhHHH
Q 007021 466 NQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVS 503 (621)
Q Consensus 466 E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne~s 503 (621)
+-+|+.++..++|.-....-+...+..++|+.++.+..
T Consensus 5 ~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888777777788888888887765
No 250
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=27.49 E-value=2.6e+02 Score=23.02 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHE 525 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~ 525 (621)
+..+..++...++....+|..+..+.-+++-+.++.+.+..|......
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555444443
No 251
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.43 E-value=61 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=26.0
Q ss_pred cChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCC
Q 007021 352 MGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 352 ~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~k 388 (621)
.+..+|++.|+.|.++.-..+ .-+.|++.|.|..
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i---~~~~g~afV~f~~ 58 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSM---DPPRNCAFVTYEK 58 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEE---ETTTTEEEEEESS
T ss_pred CCHHHHHHHHhhCCCEEEEEe---cCCCCEEEEEECC
Confidence 367889999999998754333 1457899999986
No 252
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=27.42 E-value=72 Score=28.61 Aligned_cols=54 Identities=13% Similarity=0.211 Sum_probs=36.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCCccchHHHHH
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESSAGGYLEAER 398 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kdwsGf~nA~r 398 (621)
++.|-|++.. ..+..+|++.|+.|+++. ++.+..+ .|++.|.|...- .-..|+.
T Consensus 5 ~l~v~nlp~~--------~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~-~a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGN-QAQLAMS 59 (198)
T ss_dssp EEEEECCCSS--------SCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTH-HHHHHHH
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHH-HHHHHHH
Confidence 4667787641 134688999999998864 5566554 779999998643 3334443
No 253
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=27.26 E-value=1.1e+02 Score=26.27 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.3
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
++-|-|++.. .+..+|++.|+.|+++. |+.+- ..|+|.|+|...
T Consensus 23 ~l~V~NLp~~---------~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~ 67 (100)
T 3r27_A 23 VVHIRGLIDG---------VVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDV 67 (100)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCH
Confidence 4667788642 35788999999999875 44442 368999999864
No 254
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=27.16 E-value=74 Score=29.74 Aligned_cols=45 Identities=13% Similarity=0.306 Sum_probs=33.1
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcceEEEEeCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~k 388 (621)
++.|-|++.. ..+..+|++.|+.|.++. ++....+ .|++.|.|..
T Consensus 36 ~l~V~nLp~~--------~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~ 81 (229)
T 2adc_A 36 VLLVSNLNPE--------RVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMAD 81 (229)
T ss_dssp EEEEESCCTT--------TCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESC
T ss_pred EEEEeCCCcc--------cCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECC
Confidence 4668898651 124688999999998864 5666554 7799999986
No 255
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=27.05 E-value=68 Score=30.16 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=32.1
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kd 389 (621)
++|-|++.. .+...|.+.|+.|..+.-..++.+ ..+|++.|+|...
T Consensus 49 l~VgNL~~~---------vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 49 IIVENLFYP---------VTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADP 94 (164)
T ss_dssp EEECSCCSC---------CCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCH
T ss_pred EEEeCcCCC---------CCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCH
Confidence 557787532 356789999999999754334322 2568999999764
No 256
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.95 E-value=1.4e+02 Score=31.61 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007021 477 QLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEE 530 (621)
Q Consensus 477 lv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~~~ee 530 (621)
.+..|..+|+..++.+.+|+..+.++...|+.+-++...-...-+..|.+..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777888888888888888888877777777766655555556777776665
No 257
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.80 E-value=31 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=16.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~ 29 (36)
T 2elq_A 7 GKPFKCSLCEY-----A-TRSKSNLKAHM 29 (36)
T ss_dssp CCSEECSSSSC-----E-ESCHHHHHHHH
T ss_pred CCCccCCCCCc-----h-hCCHHHHHHHH
Confidence 57899999963 2 55466777774
No 258
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.73 E-value=33 Score=23.52 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=17.0
Q ss_pred CCCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 248 ~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
....|.|+.|+. . |.....|..|-
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2em2_A 9 GEKPFKCKECGK-----A-FRQNIHLASHL 32 (46)
T ss_dssp CCCSEECSSSCC-----E-ESSHHHHHHHH
T ss_pred CCCCEECCcCCc-----h-hCCHHHHHHHH
Confidence 367899999963 2 55466777774
No 259
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.71 E-value=34 Score=23.37 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=17.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em7_A 10 EKPYKCEECGK-----G-FICRRDLYTHHM 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CcCccCCCccc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 260
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.67 E-value=1.9e+02 Score=31.70 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhhh
Q 007021 543 DYKLRAEEIAKFIT 556 (621)
Q Consensus 543 ~~r~~~E~i~~f~~ 556 (621)
+.+.++|+|.+||.
T Consensus 141 ~s~~mle~~~~~~~ 154 (461)
T 3ghg_B 141 EYSSELEKHQLYID 154 (461)
T ss_dssp CHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 261
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=26.61 E-value=4.4e+02 Score=26.24 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATF----SIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~----ne~s~sL~r~mEE~d~L~~r~k 521 (621)
+.+|.-|..+|+.-.+.+..++..| .....+|.+.+.|..+|++|.+
T Consensus 102 ~~li~pL~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK~k 152 (253)
T 2ykt_A 102 NELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ 152 (253)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhhcc
Confidence 5678899999999999999886655 4456778888888888876654
No 262
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.48 E-value=32 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.600 Sum_probs=17.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enh_A 10 EKPYECDVCRK-----A-FSHHASLTQHQR 33 (46)
T ss_dssp SSSCBCTTTCC-----B-CSSSHHHHHHGG
T ss_pred CCCcCCCCcCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554678888854
No 263
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.45 E-value=33 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.582 Sum_probs=16.9
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eoh_A 10 KKPYECKECRK-----T-FIQIGHLNQHKR 33 (46)
T ss_dssp SCSCCCSSSCC-----C-CSSHHHHHHHHH
T ss_pred CCCcCCCCcCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 444667777843
No 264
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=26.43 E-value=79 Score=28.30 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.4
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccC-cc-eeeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~-kV~~l~g~~GH~G~aVV~F~k 388 (621)
.++.|.|++.. .+.++|++.|+.|. .+ .++.+.. ..|++.|+|..
T Consensus 121 ~~l~v~nl~~~---------~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~ 167 (198)
T 1qm9_A 121 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGS 167 (198)
T ss_dssp CEEEECCCCTT---------CCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSS
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCC
Confidence 45667787642 35788999999887 54 4554442 37899999976
No 265
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=26.42 E-value=92 Score=29.62 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=31.5
Q ss_pred eEEEeccccccCCCCcccccChHHHH----HHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELL----EYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~----d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++... +..+|+ +.|+.|..+. ++... ..-++|++.|.|..-
T Consensus 11 ~l~V~nlp~~~---------~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~ 62 (282)
T 3pgw_A 11 TIYINNLNEKI---------KKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEV 62 (282)
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCH
Confidence 46688887533 345555 7899998875 44443 333689999999754
No 266
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=26.04 E-value=54 Score=28.89 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=30.3
Q ss_pred eEEEeccccccCCCCcccccChHH----HHHHhhccCcce-eeeccCCCCCcceEEEEeCCC
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQE----LLEYFILYAAVR-ARHSYGPQGHRGMSVLIFESS 389 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~e----L~d~lsgF~p~k-V~~l~g~~GH~G~aVV~F~kd 389 (621)
.+.|-|++..- +..+ |.+.|+.|+++. |.... ....+|++.|.|..-
T Consensus 31 ~LfV~nL~~~~---------~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~ 82 (127)
T 2a3j_A 31 VVLITNINPEV---------PKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQ 82 (127)
T ss_dssp EEEEESCCTTS---------CHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSH
T ss_pred EEEEeCCCCCC---------CHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCH
Confidence 46688886422 3344 446889999874 43332 234589999999863
No 267
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.81 E-value=30 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=17.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eon_A 10 EKPYKCQVCGK-----A-FRVSSHLVQHHS 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHTT
T ss_pred CcccCCCCCCc-----c-cCcHHHHHHHHH
Confidence 67899999963 2 555778888854
No 268
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.74 E-value=35 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2ytp_A 10 ERHYECSECGK-----A-FARKSTLIMHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCcCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 269
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.45 E-value=2.4e+02 Score=25.79 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHH---HHHhHHHHHHHHHHHH
Q 007021 480 YLKNRVVKEQRHSKALE---ATFSIVSEKLRETMEE 512 (621)
Q Consensus 480 ~L~nqIe~knk~lqeLE---~k~ne~s~sL~r~mEE 512 (621)
.|..++..-++-|.+-| .+||.|-+.|+..+++
T Consensus 29 lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ 64 (121)
T 3mq7_A 29 LLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA 64 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566767777777777 8999999999988865
No 270
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.38 E-value=27 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.589 Sum_probs=14.5
Q ss_pred eeEccCCCCCCCCcccccCchHHhhh
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqH 276 (621)
.|.|+.|+. . |.....|..|
T Consensus 2 ~~~C~~C~k-----~-f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNR-----A-FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCC-----B-CSSSHHHHHH
T ss_pred CcCCcccCc-----c-cCChHHHHHH
Confidence 589999963 2 4546788888
No 271
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=34 Score=21.92 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=17.0
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
..+|.|+.|+. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (36)
T 2elv_A 7 GLLYDCHICER-----K-FKNELDRDRHML 30 (36)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667888854
No 272
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.10 E-value=36 Score=23.10 Aligned_cols=24 Identities=21% Similarity=0.663 Sum_probs=17.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytf_A 10 EKPFECSECQK-----A-FNTKSNLIVHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCcCCCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555777888843
No 273
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.04 E-value=31 Score=25.03 Aligned_cols=20 Identities=25% Similarity=0.659 Sum_probs=15.6
Q ss_pred eeEccCCCCCCCCcccccCchHHhhh
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTH 276 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqH 276 (621)
-|-||.|.. + +.....|..|
T Consensus 5 GFiCP~C~~-----~-l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCMK-----S-LGSADELFKH 24 (34)
T ss_dssp EEECTTTCC-----E-ESSHHHHHHH
T ss_pred ccCCcHHHH-----H-cCCHHHHHHH
Confidence 499999952 4 6678888888
No 274
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.99 E-value=37 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 248 ~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em8_A 9 GEKPYKCVECGK-----G-YKRRLDLDFHQR 33 (46)
T ss_dssp SCCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCCeECcccCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 554677888843
No 275
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=37 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=17.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emi_A 10 ERHYECSECGK-----A-FIQKSTLSMHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCCCCCCCCc-----c-cCCHHHHHHHHh
Confidence 67899999963 2 554677888843
No 276
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.64 E-value=41 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (47)
T 2epx_A 10 KKPYECIECGK-----A-FIQNTSLIRHWR 33 (47)
T ss_dssp CCSBCCSSSCC-----C-BSSHHHHHHHHT
T ss_pred CCCEECCccCc-----h-hCChHHHHHHhH
Confidence 67899999963 2 555778888854
No 277
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.63 E-value=38 Score=22.87 Aligned_cols=24 Identities=25% Similarity=0.681 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2emb_A 10 RKRYECSKCQA-----T-FNLRKHLIQHQK 33 (44)
T ss_dssp CSSEECTTTCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 278
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.36 E-value=39 Score=22.93 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (44)
T 2epv_A 10 EKPYECNECGK-----A-FIWKSLLIVHER 33 (44)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CcCeECCCCCc-----c-cCchHHHHHHHh
Confidence 67899999963 2 554678888854
No 279
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.33 E-value=2.1e+02 Score=22.07 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=29.9
Q ss_pred HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007021 490 RHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQ 526 (621)
Q Consensus 490 k~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k~~h~~ 526 (621)
..++.||..+..+.-++.|+|-|...-.+|.|.....
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999988888777765543
No 280
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=24.27 E-value=86 Score=28.15 Aligned_cols=79 Identities=14% Similarity=0.240 Sum_probs=38.2
Q ss_pred CCeEEEeccccccCCCCcccccChHHHHHHhh---ccCcceeeeccCCCCCcceEEEEeCCCccchHHHHHHHHHHhhcC
Q 007021 331 PPMVIIMNTRLDKDENDKWTGMGNQELLEYFI---LYAAVRARHSYGPQGHRGMSVLIFESSAGGYLEAERLHKHFAEQG 407 (621)
Q Consensus 331 PWmGII~Nt~te~dddgr~~G~s~~eL~d~ls---gF~p~kV~~l~g~~GH~G~aVV~F~kdwsGf~nA~rLekhFe~qg 407 (621)
|||..|+.+.+-...+.. ...-+..|++.+. ||-... .+.+.+| . +..|-|=.|-.-|+.-.+...|-+++.
T Consensus 11 ~pm~aViFe~~~~~~~~~-Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSVKSENDTG-YGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEECC-------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEEeCCchhH-HHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 677777766543332222 2333556666554 554444 6666766 3 345567677888888888899999999
Q ss_pred CChhhhh
Q 007021 408 TDRDSWN 414 (621)
Q Consensus 408 ~GRkdW~ 414 (621)
.||..|.
T Consensus 86 ~Gr~~w~ 92 (122)
T 2go8_A 86 KGRSVWY 92 (122)
T ss_dssp ------C
T ss_pred hHHHHHh
Confidence 9999998
No 281
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=24.24 E-value=89 Score=29.78 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.2
Q ss_pred eEEEeccccccCCCCcccccChHHHHHHhhccCcceeeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVRARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
.+.|-|+|.. .+..+|++.|+.|+...++. .-+.|++.|.|...-
T Consensus 24 ~l~V~nLp~~---------~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~ 68 (284)
T 3smz_A 24 KILIRGLPGD---------VTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGE 68 (284)
T ss_dssp EEEEECCCTT---------CCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHH
Confidence 5778898753 25778999999998434444 335789999997643
No 282
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.03 E-value=30 Score=20.44 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=14.5
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.|.|+.|+. . |.....|..|-.
T Consensus 1 ~~~C~~C~k-----~-f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCER-----S-FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CccCCCCCC-----c-CCCHHHHHHHHH
Confidence 478999963 2 554667888853
No 283
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=23.98 E-value=2.5e+02 Score=30.13 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHHHhHHHHHHHHhH-----------HHHHHHHHHHHHHHHHH
Q 007021 460 YHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSI-----------VSEKLRETMEENRIVKQ 518 (621)
Q Consensus 460 isEmv~E~~R~m~k~nklv~~L~nqIe~knk~lqeLE~k~ne-----------~s~sL~r~mEE~d~L~~ 518 (621)
++--|...+++| ..+|.-|.|.-..-+..++.|...+++ .+.+.++|++++..|..
T Consensus 32 ~e~~V~~~l~~L---E~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 32 YRLTTDGELLEI---EGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 334455555533 344444444444555566666555443 35666666666655543
No 284
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.65 E-value=38 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2elz_A 10 EKPYKCEDCGK-----G-YNRRLNLDMHQR 33 (46)
T ss_dssp CSSCBCSSSCC-----B-CSSHHHHHHHGG
T ss_pred CCCeeCcccCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554678888854
No 285
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=23.58 E-value=2.9e+02 Score=24.32 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEA 497 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~ 497 (621)
+....|..|.+.|+.+-..++.|..
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555554444444
No 286
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=39 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.483 Sum_probs=17.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2enc_A 10 EKPFKCEECGK-----G-FYTNSQCYSHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CCCcCCCCCCC-----c-CCChHHHHHHHH
Confidence 67899999963 2 554678888843
No 287
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=23.56 E-value=23 Score=30.38 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=9.4
Q ss_pred CeeEccCCCCC
Q 007021 250 RQWHCPACQGG 260 (621)
Q Consensus 250 ~tf~CP~C~gk 260 (621)
..+|||.|++-
T Consensus 25 ~~LRCp~Cqnq 35 (84)
T 2hl7_A 25 QELRCPKCQNQ 35 (84)
T ss_dssp HHEECTTSSSC
T ss_pred HcCcCCCCCCC
Confidence 57999999974
No 288
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.45 E-value=41 Score=22.93 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=17.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2epz_A 10 EKPFDCIDCGK-----A-FSDHIGLNQHRR 33 (46)
T ss_dssp CCSBCCTTTCC-----C-BSSHHHHHHHHT
T ss_pred CCCeECCCCCc-----e-eCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 289
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.38 E-value=40 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=17.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2enf_A 10 EKPYKCNECGK-----V-FTQNSHLVRHRG 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSSHHHHHHHHT
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888844
No 290
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.32 E-value=41 Score=22.88 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=17.9
Q ss_pred CCCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 248 ~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2eq0_A 9 GEKPYKCHECGK-----V-FRRNSHLARHQL 33 (46)
T ss_dssp CCCCEECTTTCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 367899999963 2 555677888844
No 291
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.27 E-value=4.3e+02 Score=24.17 Aligned_cols=77 Identities=10% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhc-CCCCChhHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHhhhh
Q 007021 501 IVSEKLRETMEENRIVKQRTKMQHEQNKEEVKQSI-ANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGE 578 (621)
Q Consensus 501 e~s~sL~r~mEE~d~L~~r~k~~h~~~~ee~~q~~-~~~s~~e~~r~~~E~i~~f~~~q~kem~~f~~er~kl~~~~~~ 578 (621)
.+...|..++.+...+.+.++..+.....++.+.. +.+++.+ .|.|.-++.....-=..-|.+|-..+..+.+..-+
T Consensus 78 ~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~-~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~ 155 (180)
T 1s94_A 78 QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSAD-LRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKA 155 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577778888888888888888777776665542 2233333 35555433322222223466665554444444333
No 292
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.97 E-value=3.2e+02 Score=30.15 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETME 511 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mE 511 (621)
..++.+..+.+.+...++..+..|-.|++.+..|++-.+
T Consensus 83 ~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~ 121 (491)
T 1m1j_A 83 TSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIV 121 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 346666677777778888888888888888777776553
No 293
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.81 E-value=4e+02 Score=23.97 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=30.8
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
+.-++|+-|..++..-...|++|...|.+.-...+..|-+.-.=+.++
T Consensus 42 ~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 42 DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777877778888887777776655555554433333333
No 294
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=22.81 E-value=1.3e+02 Score=28.06 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=32.2
Q ss_pred CeEEEeccccccCCCCcccccChHHHHHHhhccC-cc-eeeeccCCCCCcceEEEEeCC
Q 007021 332 PMVIIMNTRLDKDENDKWTGMGNQELLEYFILYA-AV-RARHSYGPQGHRGMSVLIFES 388 (621)
Q Consensus 332 WmGII~Nt~te~dddgr~~G~s~~eL~d~lsgF~-p~-kV~~l~g~~GH~G~aVV~F~k 388 (621)
.++.|-|++.. .+.++|++.|+.|. .+ .++.+.. ..|++.|+|..
T Consensus 152 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~ 198 (229)
T 2adc_A 152 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGS 198 (229)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESS
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECC
Confidence 56778888642 25688999999997 44 3444432 36899999977
No 295
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.79 E-value=28 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.718 Sum_probs=17.0
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~l~~H~~ 30 (37)
T 2elo_A 7 GRSYSCPVCEK-----S-FSEDRLIKSHIK 30 (37)
T ss_dssp CCCCEETTTTE-----E-CSSHHHHHHHHH
T ss_pred CCCcCCCCCCC-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667877743
No 296
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=22.78 E-value=38 Score=22.31 Aligned_cols=24 Identities=29% Similarity=0.706 Sum_probs=17.0
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
+..|.|+.|+. . |.....|..|-.
T Consensus 4 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 27 (39)
T 1njq_A 4 PRSYTCSFCKR-----E-FRSAQALGGHMN 27 (39)
T ss_dssp SSSEECTTTCC-----E-ESSHHHHHHHHH
T ss_pred CCceECCCCCc-----c-cCCHHHHHHHHH
Confidence 57899999963 2 554667888844
No 297
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.63 E-value=42 Score=22.75 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yts_A 10 EKPYICNECGK-----S-FIQKSHLNRHRR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCEECCCCCh-----h-hCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 298
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.58 E-value=46 Score=22.64 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=16.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~ 32 (46)
T 2en3_A 10 EKPFQCKECGM-----N-FSWSCSLFKHL 32 (46)
T ss_dssp CCSEECSSSCC-----E-ESSSHHHHHHH
T ss_pred CCCeeCcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55466777773
No 299
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.58 E-value=2.5e+02 Score=25.07 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 478 LIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 478 v~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
+..|..++...+..+.+|...+++....+..++.|+|.--.|.+
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLR 49 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLR 49 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777778888888888888888888888876665553
No 300
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.56 E-value=43 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=18.1
Q ss_pred CCCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 248 PARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 248 ~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
....|.|+.|+. . |.....|..|-.
T Consensus 9 ~~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep0_A 9 GEKPYKCDVCHK-----S-FRYGSSLTVHQR 33 (46)
T ss_dssp TCCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCCeeCcccCc-----c-cCChHHHHHHHH
Confidence 367899999963 2 555778888854
No 301
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=22.47 E-value=3.8e+02 Score=23.16 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 007021 473 EDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEE 512 (621)
Q Consensus 473 k~nklv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE 512 (621)
+-.+.|..++.+|+.-++||..+...-..+-..|..+|..
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~ 55 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQK 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 6667899999999999999988765333334556666633
No 302
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.47 E-value=40 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=17.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2emg_A 10 ENPFICSECGK-----V-FTHKTNLIIHQK 33 (46)
T ss_dssp CCSCBCTTTCC-----B-CSSHHHHHHHHT
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 303
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.03 E-value=18 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=15.4
Q ss_pred CeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 250 RQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 250 ~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.+|.|+.|+. . |.....|..|-.
T Consensus 2 k~~~C~~C~k-----~-f~~~~~l~~H~~ 24 (30)
T 2lvr_A 2 KPYVCIHCQR-----Q-FADPGALQRHVR 24 (30)
Confidence 4689999963 2 444567777743
No 304
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.33 E-value=5.5e+02 Score=25.00 Aligned_cols=46 Identities=9% Similarity=-0.011 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007021 476 QQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTK 521 (621)
Q Consensus 476 klv~~L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~k 521 (621)
..|..|...+..-+..+..++..+..+...+.+...+...+..|++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~ 77 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIA 77 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555555443
No 305
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.03 E-value=41 Score=22.91 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=17.1
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2yti_A 10 EKPYKCNECGK-----V-FTQNSHLARHRG 33 (46)
T ss_dssp CCTTCCSSSCC-----C-CSSHHHHHHHHT
T ss_pred CcCeECCCCCc-----c-cCChhHHHHHhH
Confidence 67899999963 2 454667888843
No 306
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=21.99 E-value=3.5e+02 Score=27.15 Aligned_cols=46 Identities=4% Similarity=0.162 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Q 007021 475 NQQLIYLKNRVVKEQRHSKALEATFSIV----SEKLRETMEENRIVKQRT 520 (621)
Q Consensus 475 nklv~~L~nqIe~knk~lqeLE~k~ne~----s~sL~r~mEE~d~L~~r~ 520 (621)
+.+|.-|..+|+.-.+++..|+..|-.. ...|.+.+.+..++.+++
T Consensus 105 ~eli~pLe~k~e~d~k~~~~~~K~~~~~~k~~r~elkk~~~~~~k~qkK~ 154 (253)
T 2d1l_A 105 DCLINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKA 154 (253)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 6678888889999999999887755444 445666666666666544
No 307
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.93 E-value=42 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.591 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2ytb_A 9 EKPYRCDQCGK-----A-FSQKGSLIVHIR 32 (42)
T ss_dssp CCSBCCTTTTC-----C-BSSHHHHHTTGG
T ss_pred CCCeeCCCccc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 308
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.78 E-value=43 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.562 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ytq_A 10 EKPYGCSECGK-----A-FSSKSYLIIHMR 33 (46)
T ss_dssp CCSCBCSSSCC-----B-CSCHHHHHHHHT
T ss_pred CCCcCCCccCh-----h-hCChHHHHHHHH
Confidence 67899999963 2 555678888854
No 309
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=21.77 E-value=22 Score=30.98 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=9.3
Q ss_pred CeeEccCCCCC
Q 007021 250 RQWHCPACQGG 260 (621)
Q Consensus 250 ~tf~CP~C~gk 260 (621)
.++|||.|++-
T Consensus 22 ~~LRCpvCqnq 32 (90)
T 2kw0_A 22 EELRCPKCQNN 32 (90)
T ss_dssp HSSBCSCTTSC
T ss_pred HcCcCCCCCCC
Confidence 57899999974
No 310
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.66 E-value=43 Score=22.17 Aligned_cols=24 Identities=25% Similarity=0.634 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (41)
T 2ept_A 8 QRVYECQECGK-----S-FRQKGSLTLHER 31 (41)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CCCeECCCCCC-----C-cCCHHHHHHHHH
Confidence 57899999963 2 554678888854
No 311
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=21.63 E-value=47 Score=22.52 Aligned_cols=24 Identities=21% Similarity=0.635 Sum_probs=17.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em9_A 10 EKPYNCKECGK-----S-FRWASCLLKHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHGG
T ss_pred CcCeECCcccc-----c-cCChHHHHHHHH
Confidence 67899999963 2 555778888854
No 312
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.61 E-value=39 Score=22.11 Aligned_cols=22 Identities=18% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhh
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTH 276 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqH 276 (621)
..+|.|+.|+. . |.....|..|
T Consensus 7 ~k~~~C~~C~k-----~-f~~~~~L~~H 28 (37)
T 2elm_A 7 GHLYYCSQCHY-----S-SITKNCLKRH 28 (37)
T ss_dssp SCEEECSSSSC-----E-EECHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHH
Confidence 57899999963 2 5546677777
No 313
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=47 Score=22.57 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=17.1
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2em3_A 10 EKPYECKVCSK-----A-FTQKAHLAQHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHH
T ss_pred CcCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 314
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.57 E-value=47 Score=22.66 Aligned_cols=23 Identities=22% Similarity=0.629 Sum_probs=16.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2em4_A 10 QRPYECIECGK-----A-FKTKSSLICHR 32 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHH
T ss_pred CcCcCCCCCCC-----c-cCCHHHHHHHH
Confidence 67899999963 2 55466777774
No 315
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=21.49 E-value=47 Score=22.65 Aligned_cols=24 Identities=21% Similarity=0.714 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2el6_A 10 VNPYKCSQCEK-----S-FSGKLRLLVHQR 33 (46)
T ss_dssp CCSEECSSSSC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 316
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=21.42 E-value=51 Score=22.47 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=16.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+.. |.....|..|-.
T Consensus 10 ~k~~~C~~C~k~------f~~~~~L~~H~~ 33 (46)
T 2ely_A 10 EKPFKCVECGKG------FSRRSALNVHHK 33 (46)
T ss_dssp CCSBCCSSSCCC------BSSTTHHHHHHH
T ss_pred CCCcccCccCcc------cCCHHHHHHHHH
Confidence 678999999632 444667777743
No 317
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.33 E-value=49 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.639 Sum_probs=16.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eow_A 10 EKPYKCNECGK-----A-FRARSSLAIHQ 32 (46)
T ss_dssp CCCEECTTSCC-----E-ESSHHHHHHHH
T ss_pred CCCeeccccCC-----h-hcCHHHHHHHH
Confidence 67899999963 2 55466777774
No 318
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.30 E-value=1.3e+02 Score=26.66 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=29.8
Q ss_pred EEEeccccccCCCCcccccChHHHHHHhhccCcce-eeeccCCCCCcce-EEEEeCCC
Q 007021 334 VIIMNTRLDKDENDKWTGMGNQELLEYFILYAAVR-ARHSYGPQGHRGM-SVLIFESS 389 (621)
Q Consensus 334 GII~Nt~te~dddgr~~G~s~~eL~d~lsgF~p~k-V~~l~g~~GH~G~-aVV~F~kd 389 (621)
+.|-|++.. .+...|.+.|+.|..+. |+. +.+ .|+ |.|+|...
T Consensus 28 l~V~NL~~~---------vt~~~L~~~Fs~yG~V~~v~i-~~~---~Gf~aFVef~~~ 72 (124)
T 2e5i_A 28 LSIQNPLYP---------ITVDVLYTVCNPVGKVQRIVI-FKR---NGIQAMVEFESV 72 (124)
T ss_dssp EEEESCCSC---------CCHHHHHHHHTTTSCEEEEEE-EES---SSEEEEEEESSH
T ss_pred EEEcCcCCC---------CCHHHHHHHHHhcCCEEEEEE-EeC---CCCEEEEEECCH
Confidence 346787532 24668999999999975 554 333 385 99999764
No 319
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.28 E-value=50 Score=22.35 Aligned_cols=24 Identities=17% Similarity=0.534 Sum_probs=17.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2yrj_A 10 EKPYRCGECGK-----A-FAQKANLTQHQR 33 (46)
T ss_dssp CCCEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 320
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=42 Score=22.95 Aligned_cols=24 Identities=17% Similarity=0.580 Sum_probs=16.9
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2en9_A 10 KKLFKCNECKK-----T-FTQSSSLTVHQR 33 (46)
T ss_dssp SCCCBCTTTCC-----B-CSSHHHHHHHHH
T ss_pred CCCEECCccCc-----c-cCCHHHHHHHHH
Confidence 67899999963 2 554667777743
No 321
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.06 E-value=49 Score=22.58 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=16.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2emz_A 10 ERPFKCNECGK-----G-FGRRSHLAGHL 32 (46)
T ss_dssp CCSCCCSSSCC-----C-CSSHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHHHHHHHH
Confidence 67899999963 2 55466777773
No 322
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.93 E-value=38 Score=23.19 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=16.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|++|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eoz_A 10 EKPYSCNVCGK-----A-FVLSAHLNQHL 32 (46)
T ss_dssp CCSEEETTTTE-----E-ESSHHHHHHHH
T ss_pred CCCeECcccCh-----h-hCCHHHHHHHH
Confidence 67899999963 2 55467777773
No 323
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=20.89 E-value=1.5e+02 Score=27.78 Aligned_cols=46 Identities=13% Similarity=0.328 Sum_probs=33.6
Q ss_pred eEEEeccc-cccCCCCcccccChHHHHHHhhccCcc-eeeeccCCCCCcceEEEEeCCCc
Q 007021 333 MVIIMNTR-LDKDENDKWTGMGNQELLEYFILYAAV-RARHSYGPQGHRGMSVLIFESSA 390 (621)
Q Consensus 333 mGII~Nt~-te~dddgr~~G~s~~eL~d~lsgF~p~-kV~~l~g~~GH~G~aVV~F~kdw 390 (621)
++.|-|++ .. ++...|.+.|+.|..+ .|+.+.. +.|++.|.|...-
T Consensus 6 ~l~V~nL~~~~---------~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~ 53 (205)
T 3tyt_A 6 VLMVYGLDQSK---------MNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGY 53 (205)
T ss_dssp EEEEECCCTTT---------CCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHH
Confidence 45677875 21 3567899999999987 4666653 5789999998743
No 324
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.86 E-value=48 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=17.7
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~~ 33 (46)
T 2emf_A 10 GKHFECTECGK-----A-FTRKSTLSMHQK 33 (46)
T ss_dssp SCCEECSSSCC-----E-ESCHHHHHHHGG
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555678888854
No 325
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=20.81 E-value=6.8e+02 Score=28.73 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhcccCceee-cCCCCeeEccCCCCCCCCcccccCchHHhhhccccC
Q 007021 215 DTSQKSHDTRKKSRWFKKFFESLESLTVEEI-NEPARQWHCPACQGGPGAIDWYRGLQPLMTHAKTKG 281 (621)
Q Consensus 215 d~se~s~e~~k~~kwf~K~ye~Lksg~~kvk-n~~~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~gvG 281 (621)
-++-.|-|+| -++.....|.+++..++... |. +++..=|.+-= -. +. .=|++=|.|+|
T Consensus 319 aAA~RYte~r-Ls~ia~~ll~d~d~~tvdf~~ny-Dg~~~EP~vlp--~~---iP--~lLvNGa~GIa 377 (692)
T 2xcs_B 319 AAAMRFTEAR-MTKITLELLRDINKDTIDFIDNY-DGNEREPSVLP--AR---FP--NLLANGASGIA 377 (692)
T ss_dssp CCCTTTCEEE-ECHHHHHHHTTTTTTCSCEEECT-TSSCEEESSCC--CS---SC--HHHHHCEEEEC
T ss_pred cccccceeec-HHHHHHHHhhhcccccccCCcCC-CCCccChhhcc--cc---cc--HHHHcCCCccc
Confidence 3777777765 56788889999999988766 66 78888887652 22 33 35788888865
No 326
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=52 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=16.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~k~~~C~~C~k-----~-F~~~~~L~~H~ 32 (46)
T 2eom_A 10 ERGHRCSDCGK-----F-FLQASNFIQHR 32 (46)
T ss_dssp CSSCCCSSSCC-----C-CSSHHHHHHHH
T ss_pred CCCcCCCCCCC-----e-eCChHHHHHHH
Confidence 67899999963 2 44466777774
No 327
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.21 E-value=21 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.578 Sum_probs=14.6
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~------f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKA------FTQASSLIAHVR 23 (29)
Confidence 5899999632 444567777743
No 328
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=50 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=17.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eq1_A 10 EKPYKCNECGK-----A-FRAHSNLTTHQV 33 (46)
T ss_dssp SCCCCCTTTTC-----C-CSSHHHHHHHHT
T ss_pred CCCeECCcCCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888854
No 329
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=48 Score=22.54 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=17.4
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ene_A 10 EKPYKCNECGK-----V-FRHNSYLSRHQR 33 (46)
T ss_dssp SSSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCChHHHHHHHh
Confidence 67899999963 2 554677888844
No 330
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.69 E-value=39 Score=23.01 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=17.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ysp_A 10 EKPYKCEKCGK-----G-YNSKFNLDMHQK 33 (46)
T ss_dssp CCSEEETTTTE-----E-ESCHHHHHHHHT
T ss_pred CCCeECCCCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 331
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=20.64 E-value=3.6e+02 Score=22.18 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007021 481 LKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRT 520 (621)
Q Consensus 481 L~nqIe~knk~lqeLE~k~ne~s~sL~r~mEE~d~L~~r~ 520 (621)
+-+.|+..|+-|..|+..+..+..+|..++.....|..++
T Consensus 38 Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~ 77 (82)
T 2nps_D 38 IGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMT 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456788888999999999999999999988888887765
No 332
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.64 E-value=45 Score=23.54 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=16.2
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 30 ~~~~~C~~C~~-----~-f~~~~~l~~H~ 52 (57)
T 3uk3_C 30 EKPYKCEFCEY-----A-AAQKTSLRYHL 52 (57)
T ss_dssp CCCEECSSSSC-----E-ESSHHHHHHHH
T ss_pred CCCcCCCCCcc-----h-hCCHHHHHHHH
Confidence 46799999963 2 55467787773
No 333
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=49 Score=22.49 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2ep3_A 10 EKPYRCAECGK-----A-FTDRSNLFTHQK 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCCCCc-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 334
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.57 E-value=51 Score=22.50 Aligned_cols=24 Identities=17% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
..+|.|+.|+. . |.....|..|-.
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2em5_A 10 TKSHQCHECGR-----G-FTLKSHLNQHQR 33 (46)
T ss_dssp SCSEECSSSCC-----E-ESSHHHHHHHHT
T ss_pred CCCeECCcCCC-----c-cCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 335
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.56 E-value=48 Score=22.46 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=17.6
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (46)
T 2eme_A 10 EKPYVCDYCGK-----A-FGLSAELVRHQR 33 (46)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCeECCCCCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 555778888854
No 336
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.44 E-value=43 Score=22.23 Aligned_cols=24 Identities=17% Similarity=0.542 Sum_probs=17.2
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
+..|.|+.|+. . |.....|..|-.
T Consensus 9 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 32 (42)
T 2en2_A 9 EKPYKCETCGA-----R-FVQVAHLRAHVL 32 (42)
T ss_dssp SCSEECTTTCC-----E-ESSHHHHHHHTH
T ss_pred CCCEeCCCcCh-----h-hCCHHHHHHHHH
Confidence 67899999963 2 554677888843
No 337
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=46 Score=22.24 Aligned_cols=24 Identities=25% Similarity=0.677 Sum_probs=17.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 10 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 33 (44)
T 2eof_A 10 EKPYECNECQK-----A-FNTKSNLMVHQR 33 (44)
T ss_dssp CCSEECTTTCC-----E-ESCHHHHHHHHH
T ss_pred CCCeECCCCCc-----c-cCCHhHHHHHHH
Confidence 67899999963 2 555777888743
No 338
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.78 E-value=21 Score=21.16 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=14.1
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
.|.|+.|+.. |.....|..|-
T Consensus 2 p~~C~~C~k~------f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR------FVQSSQLANHI 22 (26)
Confidence 5899999632 44355777774
No 339
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.20 E-value=26 Score=30.05 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=10.4
Q ss_pred CCeeEccCCCCC
Q 007021 249 ARQWHCPACQGG 260 (621)
Q Consensus 249 ~~tf~CP~C~gk 260 (621)
..+|.||||...
T Consensus 21 ~t~F~CPfCnh~ 32 (85)
T 1wii_A 21 ETQFTCPFCNHE 32 (85)
T ss_dssp SSCCCCTTTCCS
T ss_pred CCeEcCCCCCCC
Confidence 689999999864
No 340
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.18 E-value=44 Score=21.41 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=15.2
Q ss_pred eeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 251 QWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 251 tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
.|.|+.|+. . |.....|..|-.
T Consensus 2 p~~C~~C~k-----~-F~~~~~L~~H~~ 23 (33)
T 1rim_A 2 KFACPECPK-----R-FMRSDHLSKHIT 23 (33)
T ss_dssp CCCCSSSCC-----C-CSSHHHHHHHHH
T ss_pred cccCCCCCc-----h-hCCHHHHHHHHH
Confidence 589999963 2 444667888843
No 341
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.08 E-value=48 Score=22.45 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=16.5
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHA 277 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA 277 (621)
...|.|+.|+. . |.....|..|-
T Consensus 10 ~~~~~C~~C~k-----~-f~~~~~L~~H~ 32 (46)
T 2eor_A 10 EKPYNCEECGK-----A-FIHDSQLQEHQ 32 (46)
T ss_dssp CCSEECTTTCC-----E-ESSHHHHHHHH
T ss_pred CcCccCCCCCC-----C-cCCHHHHHHHH
Confidence 67899999963 2 55466777773
No 342
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.05 E-value=59 Score=30.57 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=21.9
Q ss_pred hHHHHHHHHhcccCceeecCCCCeeEccCCC
Q 007021 228 RWFKKFFESLESLTVEEINEPARQWHCPACQ 258 (621)
Q Consensus 228 kwf~K~ye~Lksg~~kvkn~~~~tf~CP~C~ 258 (621)
.||++..+.|++|+.-. ....|.||.|+
T Consensus 118 ~~~~~~l~~l~~~~~~~---~~~~~~C~~CG 145 (170)
T 3pwf_A 118 ELYRKAKEKAEKGEDIE---IKKVYICPICG 145 (170)
T ss_dssp HHHHHHHHHHTTTCCCC---CSCEEECTTTC
T ss_pred HHHHHHHHHHhcCCcCC---CCCeeEeCCCC
Confidence 68899999999997542 24689999996
No 343
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.01 E-value=47 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.627 Sum_probs=17.3
Q ss_pred CCeeEccCCCCCCCCcccccCchHHhhhcc
Q 007021 249 ARQWHCPACQGGPGAIDWYRGLQPLMTHAK 278 (621)
Q Consensus 249 ~~tf~CP~C~gkkkq~D~Y~~l~~LLqHA~ 278 (621)
...|.|+.|+. . |.....|..|-.
T Consensus 8 ~k~~~C~~C~k-----~-f~~~~~L~~H~~ 31 (42)
T 2el5_A 8 ENPYECSECGK-----A-FNRKDQLISHQR 31 (42)
T ss_dssp CCSEECSSSCC-----E-ESSHHHHHHHHG
T ss_pred CCCccCCCcCh-----h-hCCHHHHHHHHH
Confidence 57899999963 2 554677888854
Done!