Citrus Sinensis ID: 007023

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
ccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHcccHHHHHcccEEEEEEEEEEccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccEEEEEEccEEEEEEEEccccccEEEEEEcHHHHHHHcccccEEEccccccccccEEEEEEccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEccccccHHccccccccccccccccccccccccccHHHccccccccccEEccccccEEEEEcccccccccHHHHccccHHHcccccccccccccEEEEEEEEEccccccccccEEEEEcccccccccEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHcccccccccccEEEcccccccccccccccEEEEEEccccccccEEEEEHHHHHHHHcccccEEEEcccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcccccccEEEcccccccHEEcccccccccccccHccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccEEccHHHHHHcccccEEEEcccccccccEEEEEEEEEEEEccccccEEEEEEEEcccEEEcEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHcccHHHHccEEEcc
mssknekpqnvveltssddednvaagatrpqvnapaskattqqnvprqsaaaiassppvneapesrsfwkAGTYAANitikstpvqgsleharvhpkflhsnatshKWAFGAIAELLDNAVDevqngatfvkvdrvnimkdnspalvfiddgggmdpeSLRKCMslgystkkanktigqygngfktstmrlGADVIVFSratheskstqsiGLLSYTYLrktgqddvivpmidfdisghwaepiiyssqddwsFNLKTIlewspfaskSELLQQFEDIGPHGTKVIIYNLwmndegvyelsfdddeediclrdeansgslkklpkKVLERQSHISYRIRYSLRAYASMLYlgkfdnfkiilrgkpiqqfhiadelkfpkvisyrpqvsaplkdataeTTIGfikeapalsvsgfnvyhknrlirpfwkvtgdgslkgngvvgvleanfiepthdkqdfersTLFVRLESKLKQMTLEYWKAYYHLIghqlpasssynmesggsvlspvghgpdmqkqpadqhklglasnfqedmhldvpsvalqgkvrhnlengkpavqpiigiaeghdndgtpeghpvtiSADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
mssknekpqnvveltssddednvAAGAtrpqvnapaskattqqnvPRQSAaaiassppvneaPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATfvkvdrvnimkdnSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSratheskstqsiglLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRdeansgslkklpkkvlerqshisYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIkeapalsvsgFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFiepthdkqdfersTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
*******************************************************************FWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG*****LRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLR**************VLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQL*******************************************************************VQPIIGIA************PVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLH***
*********************************************************************************************VHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK*****IGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEA************LERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGH***************************************************S*****************************************************FIKYVLYFLPSSLVSCCKLYQHHLHVQ*
*****************DDEDNVAAGATRPQV*********************************RSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHG**********HKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
***********************************************************NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEAN***LKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQL****************************************************************************************VTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
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MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKYVLYFLPSSLVSCCKLYQHHLHVQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query621 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.581 0.384 0.364 2e-53
Q8TE76 937 MORC family CW-type zinc no no 0.605 0.401 0.346 3e-53
Q8BMD7 928 MORC family CW-type zinc yes no 0.595 0.398 0.352 7e-53
Q9WVL5 950 MORC family CW-type zinc no no 0.415 0.271 0.352 5e-36
Q86VD1 984 MORC family CW-type zinc no no 0.423 0.267 0.339 3e-35
Q9Y6X9 1032 MORC family CW-type zinc no no 0.425 0.255 0.310 2e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.425 0.256 0.307 6e-33
Q8C5W4 1022 MORC family CW-type zinc no no 0.425 0.258 0.294 2e-30
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 218/390 (55%), Gaps = 29/390 (7%)

Query: 96  PKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGM 155
           PKFLH+N+TSH W F A+AEL+DNA D   N A  + +D+  I  ++   L F D+G GM
Sbjct: 16  PKFLHTNSTSHTWPFSAVAELIDNAYDPDVN-AKQIWIDKTVI--NDHICLTFTDNGNGM 72

Query: 156 DPESLRKCMSLGYSTK---KANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIG 212
             + L K +S G+S K     +  +G YGNGFK+ +MRLG D IVF++    +  + S+G
Sbjct: 73  TSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTK----NGESMSVG 128

Query: 213 LLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELL 272
           LLS TYL     + V+VP++ F+   H     +  S+     +L  ILE S F+++ +LL
Sbjct: 129 LLSQTYLEVIKAEHVVVPIVAFN--KHRQMINLAESK----ASLAAILEHSLFSTEQKLL 182

Query: 273 QQFED-IGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQ 331
            + +  IG  GT++II+NL  + +   E  F+ D+ DI + ++ +  + KK  KK  ER 
Sbjct: 183 AELDAIIGKKGTRIIIWNL-RSYKNATEFDFEKDKYDIRIPEDLDEITGKKGYKK-QERM 240

Query: 332 SHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL 391
             I+    YSLRAY S+LYL      +IILRG+ ++   ++  L + +   YRP+  +  
Sbjct: 241 DQIAPESDYSLRAYCSILYLKP--RMQIILRGQKVKTQLVSKSLAYIERDVYRPKFLS-- 296

Query: 392 KDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGD--GSLKGNGVVGVLEANFI 449
              T   T GF          G  +YH+NRLI+ + KV      +  G GVVG++E NF+
Sbjct: 297 --KTVRITFGF--NCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIECNFL 352

Query: 450 EPTHDKQDFERSTLFVRLESKLKQMTLEYW 479
           +PTH+KQDF+ +  +    + L +   +YW
Sbjct: 353 KPTHNKQDFDYTNEYRLTITALGEKLNDYW 382

Homo sapiens (taxid: 9606)
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
359476856653 PREDICTED: MORC family CW-type zinc fing 0.940 0.894 0.675 0.0
297735065641 unnamed protein product [Vitis vinifera] 0.925 0.897 0.678 0.0
255585977561 zinc finger protein, putative [Ricinus c 0.867 0.960 0.643 0.0
224134194627 predicted protein [Populus trichocarpa] 0.872 0.864 0.666 0.0
449457622550 PREDICTED: MORC family CW-type zinc fing 0.864 0.976 0.605 0.0
449500046516 PREDICTED: MORC family CW-type zinc fing 0.814 0.980 0.611 0.0
30690622626 histidine kinase-like ATPase domain-cont 0.758 0.752 0.641 0.0
27754645626 unknown protein [Arabidopsis thaliana] 0.908 0.900 0.556 0.0
297798278623 hypothetical protein ARALYDRAFT_491004 [ 0.834 0.831 0.578 0.0
297798276631 predicted protein [Arabidopsis lyrata su 0.874 0.860 0.596 0.0
>gi|359476856|ref|XP_002267687.2| PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/611 (67%), Positives = 480/611 (78%), Gaps = 27/611 (4%)

Query: 1   MSSKNEKP-QNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPV 59
           MS K EK   +VVE+ SSDDE  V        V   +++      V +Q+   +   PP 
Sbjct: 4   MSLKPEKEGMDVVEIASSDDEGGVG-------VERRSNQQVQTDQVGQQTVVPL---PPA 53

Query: 60  NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDN 119
            E P SRSFWKAG Y  N   K TP    LEHARVHPKFLHSNATSHKWAFGAIAELLDN
Sbjct: 54  -EPPLSRSFWKAGAYD-NTPSKLTPAPDQLEHARVHPKFLHSNATSHKWAFGAIAELLDN 111

Query: 120 AVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179
           AVDE+ NGATFVK+DR++  KDNSPAL+F DDGGGMDPES+RKCMSLGYS+KK+N TIGQ
Sbjct: 112 AVDEICNGATFVKLDRIDNRKDNSPALLFQDDGGGMDPESIRKCMSLGYSSKKSNTTIGQ 171

Query: 180 YGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGH 239
           YGNGFKTSTMRLGADVIVFSRA+  S++TQSIGLLSYT+LR+TGQDDVIVPM+DFDIS H
Sbjct: 172 YGNGFKTSTMRLGADVIVFSRASRTSRATQSIGLLSYTFLRRTGQDDVIVPMVDFDISDH 231

Query: 240 WAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYE 299
           WAEPIIYSS++DWS NLKTILEWSPFASK EL+QQFEDIGPHGTK+IIYNLW+NDEG++E
Sbjct: 232 WAEPIIYSSKEDWSTNLKTILEWSPFASKEELMQQFEDIGPHGTKIIIYNLWLNDEGIFE 291

Query: 300 LSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKI 359
           L+FDDD+EDI LRDEAN GSL K+PKKV E QSHISY IRYSLRAYAS+LYL KF NF+I
Sbjct: 292 LNFDDDDEDIRLRDEANRGSLSKVPKKVAELQSHISYCIRYSLRAYASILYLRKFTNFQI 351

Query: 360 ILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHK 419
           ILRGKP+QQF+IADELK+PKV+ YRPQ +  LK+A+ ETTIGFIKEAPAL VSGFNVYHK
Sbjct: 352 ILRGKPVQQFNIADELKYPKVVIYRPQHNTALKEASMETTIGFIKEAPALGVSGFNVYHK 411

Query: 420 NRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYW 479
           NRLIRPFWKVT DGS KGNGVVGVLEANFIEP HDKQDFERS+LF+RLE+KLKQM ++YW
Sbjct: 412 NRLIRPFWKVTSDGSSKGNGVVGVLEANFIEPAHDKQDFERSSLFIRLETKLKQMLMDYW 471

Query: 480 KAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQ-PADQHKLGLASNFQEDMHLDV 538
           K+  HL+GHQ P S   NM+      SPVGH   +QKQ PA+QH +GL +N +++M+LD 
Sbjct: 472 KSNCHLMGHQPPGSRVQNMQKKHPAQSPVGHAAHIQKQLPANQHIVGLTANTKKEMNLDQ 531

Query: 539 PSVALQGKVRHNLENGK-------------PAVQPIIGIAEGHDNDGTPEGHPVTISADQ 585
           P   L   +  +++N +             PAVQPIIG+ EG   + T       IS D+
Sbjct: 532 PINCLTANLGQDVDNVQPGNRCRTSVREELPAVQPIIGLREGSFKEVTSADGSGLISVDK 591

Query: 586 ICEENIQLFIK 596
           ICEENIQLF++
Sbjct: 592 ICEENIQLFMR 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297735065|emb|CBI17427.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255585977|ref|XP_002533659.1| zinc finger protein, putative [Ricinus communis] gi|223526454|gb|EEF28730.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224134194|ref|XP_002327779.1| predicted protein [Populus trichocarpa] gi|222836864|gb|EEE75257.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457622|ref|XP_004146547.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500046|ref|XP_004160988.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690622|ref|NP_195351.2| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gi|58331775|gb|AAW70385.1| At4g36280 [Arabidopsis thaliana] gi|332661243|gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|27754645|gb|AAO22768.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798278|ref|XP_002867023.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] gi|297312859|gb|EFH43282.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297798276|ref|XP_002867022.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312858|gb|EFH43281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query621
TAIR|locus:2122254626 CRH1 "CRT1 Homologue 1" [Arabi 0.864 0.857 0.593 3.3e-171
TAIR|locus:2122264635 CRT1 "compromised recognition 0.779 0.762 0.641 1.6e-164
TAIR|locus:2011226663 DMS11 "DEFECTIVE IN MERISTEM S 0.742 0.695 0.517 7.6e-128
TAIR|locus:2163320 819 AT5G50780 [Arabidopsis thalian 0.582 0.442 0.483 3.5e-117
TAIR|locus:2117358707 AT4G24970 [Arabidopsis thalian 0.724 0.636 0.493 6.1e-114
TAIR|locus:2179837708 AT5G13130 [Arabidopsis thalian 0.753 0.661 0.448 1.2e-104
TAIR|locus:2122244486 AT4G36270 "AT4G36270" [Arabido 0.685 0.876 0.467 3.1e-90
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.605 0.348 0.362 2.1e-54
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.602 0.403 0.367 4.6e-53
ZFIN|ZDB-GENE-060929-544422 zgc:152774 "zgc:152774" [Danio 0.584 0.860 0.361 1.2e-51
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1636 (581.0 bits), Expect = 3.3e-171, Sum P(2) = 3.3e-171
 Identities = 335/564 (59%), Positives = 411/564 (72%)

Query:    47 RQSAAAIASSPPV--NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNAT 104
             R+SA+ IA +  +   E  E RSFWKAG Y     + +    G LEHARVHP+FLHSNAT
Sbjct:    30 RESASTIAGAATMAPRETLECRSFWKAGDYFVIPNVVTPTAPGMLEHARVHPRFLHSNAT 89

Query:   105 SHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164
             SHKWAFGAIAELLDNAVDE+QNGATFVK+D++NI+KDNSPALVF DDGGGMDP  LRKCM
Sbjct:    90 SHKWAFGAIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVFQDDGGGMDPAGLRKCM 149

Query:   165 SLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224
             SLGYS+KK+N TIGQYGNGFKTSTMRLGAD IVFSR+T    STQS+G+LSYT+LRKTGQ
Sbjct:   150 SLGYSSKKSNTTIGQYGNGFKTSTMRLGADAIVFSRSTRGGTSTQSVGILSYTFLRKTGQ 209

Query:   225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTK 284
             DDV VPMID DIS    +PIIY S +DW+ NL+ +L+WSPF+++ ELLQQFED+G HGTK
Sbjct:   210 DDVTVPMIDIDISKERPQPIIYGSPEDWAANLEILLKWSPFSTEDELLQQFEDVGTHGTK 269

Query:   285 VIIYNLWMNDEGVYELSFDDDEEDICLRDEA-NSGSLKKLPKKVLERQSHISYRIRYSLR 343
             VIIYNLW+NDEG+YELSFDDDEEDI LRDE+ N G  K+L  K+LE +SHISY +RYSLR
Sbjct:   270 VIIYNLWLNDEGIYELSFDDDEEDIRLRDESVNDG--KRLHHKILELRSHISYHLRYSLR 327

Query:   344 AYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFI 403
             AYASMLYL KF NFKII+RG P++QF+IAD  +FP++I Y+P  +A  + A+ E  IGF+
Sbjct:   328 AYASMLYLKKFKNFKIIIRGIPVEQFNIADGFRFPEIIKYKPH-TATTEQASTEIKIGFV 386

Query:   404 KEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTL 463
             KEAP L++ GFNVYHKNRLIRPFWKVT  G   G+GVVGVLEANFIEP HDKQDFERS+L
Sbjct:   387 KEAPKLAICGFNVYHKNRLIRPFWKVTMGGDSTGHGVVGVLEANFIEPAHDKQDFERSSL 446

Query:   464 FVRLESKLKQMTLEYWKAYYHLIGH---QLPASSSYNMESGGS--VLSPVGHGP---DMQ 515
             F RLE++LK++   YW ++ HL+G+   Q+PA  S  +        +S V   P   D  
Sbjct:   447 FQRLEARLKKIVYSYWYSHCHLLGYHKYQMPADKSKKIAIPDQPPTISTVNPSPLPSDKI 506

Query:   516 KQPADQ-HKLGLASNFQEDMHLDVPSVALQGK--VRHNLENGKPAVQPIIGIAEGHDNDG 572
              Q      ++ L SN      +   S  L+    +R N +  +   QP      G++ DG
Sbjct:   507 SQGGPIIREINL-SNATSSRTVAFASPHLRNSTGLRSNFQPVQLNPQPTAADT-GNNLDG 564

Query:   573 TPEGHPVTISADQICEENIQLFIK 596
                      SA +I +EN+QLF++
Sbjct:   565 K--------SAGEIRQENLQLFMR 580
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-544 zgc:152774 "zgc:152774" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00036855001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (650 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 2e-19
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 7e-08
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 7e-05
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-04
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 84.3 bits (209), Expect = 2e-19
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPA-LVFIDDGGGMDPESLRKCMSLGY 168
             AIAEL+DN++D     AT VK+    I  D     +   D+GGGM  E LR  + LG 
Sbjct: 4   EDAIAELIDNSIDA---DATNVKIS---IDPDRGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 169 STKKA---NKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           S+K+    + T+G+ G G K +++ LG  + V S+   ES +      L    + K G+ 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLT----LDLDDIDKEGEW 113

Query: 226 DVIVPMID 233
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 621
KOG1845775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.9
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.69
PRK05218613 heat shock protein 90; Provisional 99.67
PRK14083601 HSP90 family protein; Provisional 99.55
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.47
PTZ00130 814 heat shock protein 90; Provisional 99.43
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.42
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.42
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.41
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.32
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 98.85
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.68
COG3290537 CitA Signal transduction histidine kinase regulati 98.55
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.54
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.52
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.48
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 98.44
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.38
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.33
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.32
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.3
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.3
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 98.24
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.11
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 98.06
PRK10364457 sensor protein ZraS; Provisional 98.01
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 97.99
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 97.95
PRK11086542 sensory histidine kinase DcuS; Provisional 97.8
PRK10604433 sensor protein RstB; Provisional 97.8
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 97.73
PRK11360607 sensory histidine kinase AtoS; Provisional 97.68
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 97.67
PRK09303380 adaptive-response sensory kinase; Validated 97.65
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.64
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.64
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.63
PRK09470461 cpxA two-component sensor protein; Provisional 97.6
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.59
PRK09467435 envZ osmolarity sensor protein; Provisional 97.58
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.55
PRK11100475 sensory histidine kinase CreC; Provisional 97.53
PRK10755356 sensor protein BasS/PmrB; Provisional 97.52
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.49
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 97.46
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.44
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.4
PRK10815485 sensor protein PhoQ; Provisional 97.36
PRK13837828 two-component VirA-like sensor kinase; Provisional 97.35
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.3
PLN03237 1465 DNA topoisomerase 2; Provisional 97.26
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.22
PRK10618894 phosphotransfer intermediate protein in two-compon 97.1
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 97.09
PTZ00109 903 DNA gyrase subunit b; Provisional 97.06
PRK10490895 sensor protein KdpD; Provisional 97.05
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.05
PRK15347921 two component system sensor kinase SsrA; Provision 97.04
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 97.03
COG4191603 Signal transduction histidine kinase regulating C4 97.01
PRK11091779 aerobic respiration control sensor protein ArcB; P 96.99
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 96.93
PRK09835482 sensor kinase CusS; Provisional 96.92
PRK10547670 chemotaxis protein CheA; Provisional 96.92
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 96.92
PRK10337449 sensor protein QseC; Provisional 96.9
PRK13557540 histidine kinase; Provisional 96.83
PRK099591197 hybrid sensory histidine kinase in two-component r 96.76
PRK10841924 hybrid sensory kinase in two-component regulatory 96.69
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 96.43
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.34
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 96.34
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.04
PLN03128 1135 DNA topoisomerase 2; Provisional 96.02
COG0643716 CheA Chemotaxis protein histidine kinase and relat 95.82
COG4585365 Signal transduction histidine kinase [Signal trans 95.78
PRK11644495 sensory histidine kinase UhpB; Provisional 95.76
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 95.75
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 95.54
PRK03660146 anti-sigma F factor; Provisional 95.31
PRK13560807 hypothetical protein; Provisional 95.26
COG3850574 NarQ Signal transduction histidine kinase, nitrate 95.15
PRK04069161 serine-protein kinase RsbW; Provisional 95.1
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 94.14
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 94.1
COG4251750 Bacteriophytochrome (light-regulated signal transd 93.77
COG3852363 NtrB Signal transduction histidine kinase, nitroge 93.69
COG5000712 NtrY Signal transduction histidine kinase involved 93.48
COG2972456 Predicted signal transduction protein with a C-ter 93.09
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 92.9
COG4192673 Signal transduction histidine kinase regulating ph 92.45
PRK13559361 hypothetical protein; Provisional 91.96
COG5002459 VicK Signal transduction histidine kinase [Signal 91.74
COG3851497 UhpB Signal transduction histidine kinase, glucose 91.18
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 89.1
COG3920221 Signal transduction histidine kinase [Signal trans 87.69
PF14501100 HATPase_c_5: GHKL domain 82.03
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-53  Score=481.31  Aligned_cols=410  Identities=48%  Similarity=0.708  Sum_probs=361.5

Q ss_pred             ChhhhHhhhccccCccCccccCCCcCcccccccccccccccccccccHHHHHHHhhccchhhhhCCCceEEEEEEEccCC
Q 007023           62 APESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD  141 (621)
Q Consensus        62 ~~~~~~fw~ag~~~~~~~~~~~~~~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~  141 (621)
                      +..||||||||+|..+.........++..|+.+||+|||+|+|+|+|+++|++||+|||+|.+.++|+.+.|+......+
T Consensus       100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d  179 (775)
T KOG1845|consen  100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMD  179 (775)
T ss_pred             hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccc
Confidence            44599999999999944455555567789999999999999999999999999999999999999999988887664444


Q ss_pred             C-CCeEEEE-----ECCCCCCHHHHHHhhhcccccccC-CCCcccccccccccccccCCEEEEEee--eCCCCCcceeee
Q 007023          142 N-SPALVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIG  212 (621)
Q Consensus       142 ~-~~~I~I~-----DNG~GMs~e~l~~~~~~G~S~K~~-~~~IGrfGiGlKsAs~~lG~~v~V~Sr--~~~~~~~t~svg  212 (621)
                      . ...++|+     |||+||.++.+.++|.+|++.|.. ...+|+||+|||++.|++|.++.+++|  ...+.+.++++|
T Consensus       180 ~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsig  259 (775)
T KOG1845|consen  180 IFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIG  259 (775)
T ss_pred             ccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEE
Confidence            4 5567777     679999999999999999998874 789999999999999999999999999  444667899999


Q ss_pred             eeeeeehhccCCCCeEEee----eeccCCCCccccccccCccccchhhhh-----hcccCCCCChHHHHHh---------
Q 007023          213 LLSYTYLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ---------  274 (621)
Q Consensus       213 llS~tfl~~~~~~di~VPi----~d~d~~~~~~~~iv~~~~e~w~~~l~i-----Il~ySPf~se~eL~~q---------  274 (621)
                      +|||+||+.++.+|++|||    .+++...+.+.+|++.+..+|..++.+     +++|+||.++.+++.|         
T Consensus       260 lls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~  339 (775)
T KOG1845|consen  260 LLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF  339 (775)
T ss_pred             EEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc
Confidence            9999999999999999999    888888888889988888999999888     9999999999999988         


Q ss_pred             ------hhccCCCeeEEEEecc--cccCCCceeccCCCChhhhhhcccccccccccchhhhhhhcccchhhhhhhhhhhh
Q 007023          275 ------FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYA  346 (621)
Q Consensus       275 ------f~~i~~hGT~III~nL--w~~~dg~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYl  346 (621)
                            ++.++.+||.+|+|++  |....|..|+||+.++++|..                         .+.++++.|.
T Consensus       340 ~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~  394 (775)
T KOG1845|consen  340 PEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEA  394 (775)
T ss_pred             chhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcc
Confidence                  7888899999999999  999999999999988776541                         3466888999


Q ss_pred             hhhccCCCCceEEEEcCeecccccccccccCCccccCCCCCcCcC---cccceEEEEeeeccCC-CcccCceEEEEeCce
Q 007023          347 SMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL---KDATAETTIGFIKEAP-ALSVSGFNVYHKNRL  422 (621)
Q Consensus       347 SILYL~~~~~fkI~LnG~~V~~~~i~~~L~~~e~~~YkPq~~~~v---~~~~v~itiGf~kea~-~~~~~G~~vY~~nRL  422 (621)
                      +|||+..+++|++.+.|+.+.++.+....+..+...|.|+....-   .........||.+.++ ..+..+++|||++||
T Consensus       395 sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~l  474 (775)
T KOG1845|consen  395 SILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRL  474 (775)
T ss_pred             cccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcc
Confidence            999999899999999999999999999888889999999976431   1233345578877765 457789999999999


Q ss_pred             ec----ccccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCCc
Q 007023          423 IR----PFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSY  496 (621)
Q Consensus       423 I~----~~ekVg~~~~~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l~~YW~~~~~~~gy~~~~~~~~  496 (621)
                      |.    |+|+.|+...+.++++++++.++|.++++++|+|+.+..-...+....++++.||...|+.++|..+.....
T Consensus       475 ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~  552 (775)
T KOG1845|consen  475 IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKE  552 (775)
T ss_pred             hhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhh
Confidence            99    999999999999999999999999999999999999999999999999999999999999999987774443

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query621
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 78/556 (14%), Positives = 158/556 (28%), Gaps = 180/556 (32%)

Query: 50  AAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWA 109
           A  +  S  V    + + FW       N+   ++P +  LE      + L      +  +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW------LNLKNCNSP-ETVLEML----QKLLYQIDPNWTS 215

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR----KCMS 165
               +  +   +  +Q      ++ R+   K     L+ + +    + ++       C  
Sbjct: 216 RSDHSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268

Query: 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           L  +T+   K +  + +   T+ + L    +     T +    +   LL   YL    QD
Sbjct: 269 L-LTTR--FKQVTDFLSAATTTHISLDHHSMTL---TPD----EVKSLLL-KYLDCRPQD 317

Query: 226 -----DVIVPMIDFDISGHWAEPIIYSSQ-DDWSF----NLKTILEWS-----PFASKSE 270
                    P     +S          +  D+W       L TI+E S     P    +E
Sbjct: 318 LPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----AE 370

Query: 271 LLQQFEDIG--PHGTKV---IIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPK 325
             + F+ +   P    +   ++  +W +           D   +          + KL K
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVMVV----------VNKLHK 413

Query: 326 K-VLERQSH-ISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVI-S 382
             ++E+Q    +  I  S+     +    K +N             H         ++  
Sbjct: 414 YSLVEKQPKESTISI-PSI----YLELKVKLEN---------EYALHR-------SIVDH 452

Query: 383 YRPQVSAPLKDATAETTIGFIKEAPALSVSGFN--VYHKNRLIRPFWKVTGDGSLKGNGV 440
           Y    +    D        +           ++   +H                LK    
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF----------YSHIGHH----------------LKN--- 483

Query: 441 VGVLEANFIEPTHDKQDFERSTLFVR-LESKLKQMTLEYWKAYYHLIGHQLPASSSYNME 499
                   IE       F    L  R LE K++                      S    
Sbjct: 484 --------IEHPERMTLFRMVFLDFRFLEQKIRH--------------------DSTAWN 515

Query: 500 SGGSVLSPVGHGPDMQK--------QPADQHKLGLASNF----QEDM----HLDVPSVAL 543
           + GS+L+ +     ++          P  +  +    +F    +E++    + D+  +AL
Sbjct: 516 ASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 544 QGKVRHNLENGKPAVQ 559
             +     E     VQ
Sbjct: 573 MAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 99.62
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 99.59
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.58
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 99.57
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 99.46
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 99.45
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 99.45
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 99.4
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.39
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.37
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.36
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.36
3peh_A281 Endoplasmin homolog; structural genomics, structur 99.35
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.34
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.34
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.33
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 99.29
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.19
4duh_A220 DNA gyrase subunit B; structure-based drug design, 98.85
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 98.77
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.74
1s16_A390 Topoisomerase IV subunit B; two-domain protein com 98.6
1ei1_A391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 98.59
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 98.45
3cwv_A369 DNA gyrase, B subunit, truncated; structural genom 98.25
3lnu_A408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 98.25
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 98.22
1zxm_A400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 98.19
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 98.13
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 98.06
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 98.06
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 98.0
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 97.98
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 97.97
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 97.95
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 97.94
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 97.93
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.93
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 97.9
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 97.85
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 97.85
1b3q_A379 Protein (chemotaxis protein CHEA); histine kinase, 97.85
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 97.84
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 97.83
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 97.81
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 97.8
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 97.78
1pvg_A418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 97.69
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 97.68
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 97.61
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 97.57
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 97.52
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 97.42
3zxo_A129 Redox sensor histidine kinase response regulator; 97.32
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 97.16
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 96.86
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 96.77
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 94.15
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 91.18
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
Probab=99.62  E-value=9.2e-15  Score=162.94  Aligned_cols=96  Identities=28%  Similarity=0.381  Sum_probs=73.3

Q ss_pred             ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007023           99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-  164 (621)
Q Consensus        99 LhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-  164 (621)
                      |+++..      .+|+|||+||+||..             ..++.+.|++..+.  +...|+|.|||+||+++++.+.+ 
T Consensus        24 lYsn~~------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~   95 (559)
T 1y4s_A           24 LYSNKE------IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLG   95 (559)
T ss_dssp             TGGGTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHS
T ss_pred             cCCChH------HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHh
Confidence            666654      699999999999961             12444455555432  34689999999999999998765 


Q ss_pred             hccccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007023          165 SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH  203 (621)
Q Consensus       165 ~~G~S~K~------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~  203 (621)
                      ++|+|.+.            +...||+||+||.+ +|.+|.+++|.||..+
T Consensus        96 tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~  145 (559)
T 1y4s_A           96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG  145 (559)
T ss_dssp             CCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred             hhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence            58888642            35689999999975 6778999999999865
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 621
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 0.001
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 112 AIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK 171
            + EL++N++D    GAT + +D   I +  +  +   D+G G+  + L   ++   ++K
Sbjct: 28  VVKELVENSLDA---GATRIDID---IERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 172 KANKTIGQY-----GNGFKTSTMRLGADVIVFSRATHESKSTQ 209
            A+    +        G   +++   + + + SR   + ++ Q
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query621
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.42
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.38
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.36
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.21
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.04
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.34
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.29
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.27
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.19
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.18
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.08
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 97.85
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 97.83
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.82
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 97.67
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.59
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 97.39
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.2
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.09
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure