BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007024
(621 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMD|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|A Chain A, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3DMD|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
pdb|3E70|C Chain C, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 166/275 (60%), Gaps = 14/275 (5%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D++ AL L+ L+ +VA E+ + L E + L GKK+ T I++ A++EA+ I
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI 110
Query: 394 LTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDT 453
L R ID++ ++ A+ KPY K+T +AK+A WL H SV++AA DT
Sbjct: 111 LETSRRIDLIEEIRKAE---KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167
Query: 454 FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE 513
FR+GA+EQL HA+R+ V + + Y DPA VA +AIQ A G DVVL+DTAGR + N
Sbjct: 168 FRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNR 227
Query: 514 PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573
LM + K+ + P+LV+FVG+AL GN V+Q +FN+ + IDGI+LTK
Sbjct: 228 NLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK----------IDGIILTK 277
Query: 574 FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608
D D + GAALS+ YV AP++FVG GQ Y DL+
Sbjct: 278 LDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|3DM9|B Chain B, Structures And Conformations In Solution Of The Signal
Recognition Particle Receptor From The Archaeon
Pyrococcus Furiosus
Length = 328
Score = 205 bits (522), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 165/275 (60%), Gaps = 14/275 (5%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D++ AL L+ L+ +VA E+ + L E + L GKK+ T I++ A++EA+ I
Sbjct: 51 DVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI 110
Query: 394 LTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDT 453
L R ID++ ++ A+ KPY K+T +AK+A WL H SV++AA DT
Sbjct: 111 LETSRRIDLIEEIRKAE---KPYVIXFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167
Query: 454 FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE 513
FR+GA+EQL HA+R+ V + + Y DPA VA +AIQ A G DVVL+DTAGR + N
Sbjct: 168 FRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNR 227
Query: 514 PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573
L K+ + P+LV+FVG+AL GN V+Q +FN+ + IDGI+LTK
Sbjct: 228 NLXDEXKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVK----------IDGIILTK 277
Query: 574 FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608
D D + GAALS+ YV AP++FVG GQ Y DL+
Sbjct: 278 LDA-DARGGAALSISYVIDAPILFVGVGQGYDDLR 311
>pdb|2IY3|A Chain A, Structure Of The E. Coli Signal Recognition Particle Bound
To A Translating Ribosome
Length = 432
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1RY1|U Chain U, Structure Of The Signal Recognition Particle Interacting
With The Elongation-Arrested Ribosome
Length = 296
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1O87|A Chain A, A New Mggdp Complex Of The Ffh Ng Domain
pdb|1O87|B Chain B, A New Mggdp Complex Of The Ffh Ng Domain
pdb|2C04|A Chain A, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2C04|B Chain B, Gmppcp Complex Of Srp Gtpase Ffh Ng Domain At Ultra-High
Resolution
pdb|2J45|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J45|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|A Chain A, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
pdb|2J46|B Chain B, Water Structure Of T. Aquaticus Ffh Ng Domain At 1.1a
Resolution
Length = 297
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1LS1|A Chain A, T. Aquaticus Ffh Ng Domain At 1.1a Resolution
Length = 295
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|1OKK|A Chain A, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2CNW|A Chain A, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|B Chain B, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|C Chain C, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2J7P|A Chain A, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|B Chain B, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|1NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|2XKV|A Chain A, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 294
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 135/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 136/285 (47%), Gaps = 20/285 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+ E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608
+ G++LTK D D + GAALS +V+G P+ F G + L+
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSEKPEGLE 280
>pdb|2C03|A Chain A, Gdp Complex Of Srp Gtpase Ffh Ng Domain
pdb|2C03|B Chain B, Gdp Complex Of Srp Gtpase Ffh Ng Domain
Length = 297
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+ E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|1FFH|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+ E V GK++ + ++
Sbjct: 15 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 74
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 75 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 125
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 126 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 185
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 186 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 237
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 238 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|2NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 293
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+ E V GK++ + ++
Sbjct: 15 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 74
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 75 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 125
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 126 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 185
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 186 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 237
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 238 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 273
>pdb|1RJ9|B Chain B, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 300
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 134/279 (48%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+ E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + K+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 147/305 (48%), Gaps = 21/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
++ + IA +++D+A ++ ++ ++ L+ +V + +L + +LE K A
Sbjct: 10 LANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKV 435
++ I++ EE + T + I+I + KP K+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGIQGSGKTTTVAKL 120
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
A + + V + DT+R GA QLR R + +F EKD +AKE +
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
G D+++VDTAGR ++++ L+ + ++ + +P V+ V + +G A +NQ LA
Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA------YNQALA 234
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
++P I I++TK D K G ALS V +GAP+ F+G G+ D++ +
Sbjct: 235 FKEATP----IGSIIVTKLDG-SAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRF 289
Query: 616 VKTLL 620
V LL
Sbjct: 290 VSRLL 294
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 149/309 (48%), Gaps = 21/309 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL- 372
T S ++I+G+ L + +++ L+ ++ L+ +VA + + V G ++
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNL 432
S T V+ E + + +++++ AA+ P K+T++
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNL-----AAQ---PPAVVLMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+ +L + HK V++ + D +R A++QL T A ++ V F + P + A++
Sbjct: 118 GKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
EA DV+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN
Sbjct: 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ +++G P+ F+G G+ L+ +
Sbjct: 238 EALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
Query: 612 VKSIVKTLL 620
I +L
Sbjct: 287 PDRIASRIL 295
>pdb|2J37|W Chain W, Model Of Mammalian Srp Bound To 80s Rncs
Length = 504
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 151/305 (49%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHA-AKEQRKPYXXXXXXXXXXXKSTNLAKV 435
++Q A+ + LV+++ P V A + K K+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 149/309 (48%), Gaps = 21/309 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL- 372
T S ++I+G+ L + +++ L+ ++ L+ +VA + + V G ++
Sbjct: 5 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 64
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNL 432
S T V+ E + + +++++ AA+ P K+T++
Sbjct: 65 KSLTPGQEFVKIVRNELVAAMGEENQTLNL-----AAQP---PAVVLMAGLQGAGKTTSV 116
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+ +L + HK V++ + D +R A++QL T A ++ V F + P + A++
Sbjct: 117 GKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 176
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
EA DV+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN
Sbjct: 177 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFN 236
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ +++G P+ F+G G+ L+ +
Sbjct: 237 EALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 285
Query: 612 VKSIVKTLL 620
I +L
Sbjct: 286 PDRIASRIL 294
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 411 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 95 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 154
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 155 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 214
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 215 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 263
Query: 585 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 264 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 299
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 411 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 94 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 153
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 154 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 213
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 214 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 262
Query: 585 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 263 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 298
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 428 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-EKGYEKDPAIVA 486
K+T AK+A ++ + + + A DT+R A EQL+ A ++ VPI+ ++ K P +
Sbjct: 112 KTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV 171
Query: 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546
KE +++ + +DV+++DTAGR ++ + L+ + ++ + NPD ++ V + +G A Q
Sbjct: 172 KEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQ 229
Query: 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606
F + + ++ S I++TK D K G ALS V + AP+ F+G G+ D
Sbjct: 230 AKAFKEAVGEIGS---------IIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDD 279
Query: 607 LKKLNVKSIVKTLL 620
L+ + K + LL
Sbjct: 280 LEPFDPKKFISRLL 293
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 428 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF-EKGYEKDPAIVA 486
K+T AK+A ++ + + + A DT+R A EQL+ A ++ VPI+ ++ K P +
Sbjct: 112 KTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIV 171
Query: 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546
KE +++ + +DV+++DTAGR ++ + L+ + ++ + NPD ++ V + +G A Q
Sbjct: 172 KEGMEKFKK--ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQ 229
Query: 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606
F + + ++ S I++TK D K G ALS V + AP+ F+G G+ D
Sbjct: 230 AKAFKEAVGEIGS---------IIVTKLDG-SAKGGGALSAVAETKAPIKFIGIGEGIDD 279
Query: 607 LKKLNVKSIVKTLL 620
L+ + K + LL
Sbjct: 280 LEPFDPKKFISRLL 293
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 411 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 89 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 148
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 149 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 208
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 209 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 257
Query: 585 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 258 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 293
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 411 EQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+ K+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 408
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 409 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 457
Query: 585 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 458 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 145/300 (48%), Gaps = 31/300 (10%)
Query: 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEE 388
NLD++ E L L++ L+ + + A K+ +++ + +L S +I + A+++
Sbjct: 41 NLDES--ESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSGPQI----KEALKK 94
Query: 389 ALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMM 448
+ ++LT R + L+ ++ +P K+T L K+A + V V+M
Sbjct: 95 NIFKLLTERVTTTELQLGNS-----RPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLM 149
Query: 449 AACDTFRSGAVEQLRTHARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507
AA DTFR+ A EQL A+R I +G + PA V +A++ A DVVL DT+G
Sbjct: 150 AAGDTFRAAAGEQLEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSG 209
Query: 508 RMQDNEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560
R+ N LM RA+SK + + P+ VL V + G + + Q +FNQ +
Sbjct: 210 RLHTNYNLMEELRGCKRAVSKALS-SAPNEVLLVLDGTTGLNMLAQAREFNQVIG----- 263
Query: 561 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ G +LTK D + G +S+V PV FVG G+ DL+ + +S V L
Sbjct: 264 -----VTGFILTKLDGT-ARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQSFVDALF 317
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 29/296 (9%)
Query: 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392
A+ + L L++ L+ + +I ++ E + + KL S S ++ A++E+++
Sbjct: 84 AETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLE 139
Query: 393 ILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACD 452
+L + S L+ RKP K+T+L K+A+ L V+MAA D
Sbjct: 140 MLAKKNSKTELQLGF-----RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 194
Query: 453 TFRSGAVEQLRTHARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQD 511
TFR+ A +QL A R I +G + A V +A++ G DVVL DT+GR+
Sbjct: 195 TFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT 254
Query: 512 NEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
N LM +A+ K++ P+ +L V + G + + Q +FN+ +
Sbjct: 255 NYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEVVG--------- 304
Query: 565 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
I G++LTK D + G +S+V G PV F+G G++ DL+ + ++ V +
Sbjct: 305 -ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 358
>pdb|2Q9A|A Chain A, Structure Of Apo Ftsy
pdb|2Q9A|B Chain B, Structure Of Apo Ftsy
pdb|2Q9B|A Chain A, Structure Of Ftsy:gmppnp Complex
pdb|2Q9B|B Chain B, Structure Of Ftsy:gmppnp Complex
pdb|2Q9C|A Chain A, Structure Of Ftsy:gmppnp With Mgcl Complex
pdb|2Q9C|B Chain B, Structure Of Ftsy:gmppnp With Mgcl Complex
Length = 304
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 22/251 (8%)
Query: 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVA 436
++ A++E LV +L P LR + ++ KP K+T +AK+
Sbjct: 64 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 123
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
+ VM A DTFR+ QL +RL +P+ + DPA +A +A+Q
Sbjct: 124 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKAR 183
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550
G D++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF
Sbjct: 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 243
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
++ + + G+++TK D K G + +V P+ FVG G+ DL+
Sbjct: 244 HEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292
Query: 611 NVKSIVKTLLK 621
+ ++ V+ LL+
Sbjct: 293 DPEAFVEALLE 303
>pdb|1OKK|D Chain D, Homo-Heterodimeric Complex Of The Srp Gtpases
pdb|2XKV|D Chain D, Atomic Model Of The Srp-Ftsy Early Conformation
Length = 303
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 22/251 (8%)
Query: 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVA 436
++ A++E LV +L P LR + ++ KP K+T +AK+
Sbjct: 63 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 122
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
+ VM A DTFR+ QL +RL +P+ + DPA +A +A+Q
Sbjct: 123 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKAR 182
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550
G D++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF
Sbjct: 183 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 242
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
++ + + G+++TK D K G + +V P+ FVG G+ DL+
Sbjct: 243 HEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 291
Query: 611 NVKSIVKTLLK 621
+ ++ V+ LL+
Sbjct: 292 DPEAFVEALLE 302
>pdb|2CNW|D Chain D, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|E Chain E, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2CNW|F Chain F, Gdpalf4 Complex Of The Srp Gtpases Ffh And Ftsy
pdb|2IYL|D Chain D, Structure Of An Ftsy:gdp Complex
Length = 284
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 22/251 (8%)
Query: 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVA 436
++ A++E LV +L P LR + ++ KP K+T +AK+
Sbjct: 44 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 103
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
+ VM A DTFR+ QL +RL +P+ + DPA +A +A+Q
Sbjct: 104 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKAR 163
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550
G D++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF
Sbjct: 164 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 223
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
++ + + G+++TK D K G + +V P+ FVG G+ DL+
Sbjct: 224 HEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 272
Query: 611 NVKSIVKTLLK 621
+ ++ V+ LL+
Sbjct: 273 DPEAFVEALLE 283
>pdb|2J7P|D Chain D, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
pdb|2J7P|E Chain E, Gmppnp-Stabilized Ng Domain Complex Of The Srp Gtpases Ffh
And Ftsy
Length = 283
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 115/251 (45%), Gaps = 22/251 (8%)
Query: 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXX-----KSTNLAKVA 436
++ A++E LV +L P LR + ++ KP K+T +AK+
Sbjct: 43 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 102
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
+ VM A DTFR+ QL +RL +P+ + DPA +A +A+Q
Sbjct: 103 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMKAR 162
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550
G D++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF
Sbjct: 163 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 222
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
++ + + G+++TK D K G + +V P+ FVG G+ DL+
Sbjct: 223 HEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 271
Query: 611 NVKSIVKTLLK 621
+ ++ V+ LL+
Sbjct: 272 DPEAFVEALLE 282
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 141/296 (47%), Gaps = 29/296 (9%)
Query: 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR 392
A+ + L L++ L+ + +I ++ E + + KL S S ++ A++E+++
Sbjct: 27 AETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLE 82
Query: 393 ILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACD 452
+L + S L+ RKP K+T+L K+A+ L V+MAA D
Sbjct: 83 MLAKKNSKTELQLGF-----RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGD 137
Query: 453 TFRSGAVEQLRTHARRLQVPI-FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQD 511
TFR+ A +QL A R I +G + A V +A++ G DVVL DT+GR+
Sbjct: 138 TFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHT 197
Query: 512 NEPLM-------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
N LM +A+ K++ P+ +L V + G + + Q +FN+ +
Sbjct: 198 NYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFNEVVG--------- 247
Query: 565 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
I G++LTK D + G +S+V G PV F+G G++ DL+ + ++ V +
Sbjct: 248 -ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIF 301
>pdb|1RJ9|A Chain A, Structure Of The Heterodimer Of The Conserved Gtpase
Domains Signal Recognition Particle (Ffh) And Its
Receptor (Ftsy)
Length = 304
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 22/251 (8%)
Query: 382 VQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYX-----XXXXXXXXXXKSTNLAKVA 436
++ A++E LV +L P LR + ++ KP K+T +AK+
Sbjct: 64 LKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLG 123
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
+ VM A DTFR+ QL +RL +P+ + D A +A +A+Q
Sbjct: 124 RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKAR 183
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKF 550
G D++ VDTAGR+ LM L K+ P V V +A+ G + ++Q KF
Sbjct: 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKF 243
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
++ + + G+++TK D K G + +V P+ FVG G+ DL+
Sbjct: 244 HEAVG----------LTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPF 292
Query: 611 NVKSIVKTLLK 621
+ ++ V+ LL+
Sbjct: 293 DPEAFVEALLE 303
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 13/195 (6%)
Query: 428 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487
K+T K+AY+ + V + A D +R A +QL ++ V ++ + ++P +AK
Sbjct: 110 KTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAK 169
Query: 488 EAIQEATRNGSDVVLVDTAGRMQDNEP--LMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545
+ + +N D+++VDTAGR E L+ + ++ + PD V+ V +A +G A D
Sbjct: 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD 229
Query: 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605
S+F+Q +SP I +++TK D K G ALS V +GA + F+G G+
Sbjct: 230 LASRFHQ------ASP----IGSVIITKMDGT-AKGGGALSAVVATGATIKFIGTGEKID 278
Query: 606 DLKKLNVKSIVKTLL 620
+L+ N K V +L
Sbjct: 279 ELETFNAKRFVSRIL 293
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 13/208 (6%)
Query: 415 PYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474
P+ K+T K+AY+ + V + A D +R A +QL ++ V ++
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 163
Query: 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEP--LMRALSKLIYLNNPDLVL 532
+ ++P +AK+ + +N D+++VDTAGR E L+ + ++ + PD V+
Sbjct: 164 GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVI 223
Query: 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG 592
V +A +G A D S+F+Q +SP I +++TK D K G ALS V +G
Sbjct: 224 LVIDASIGQKAYDLASRFHQ------ASP----IGSVIITKMDGT-AKGGGALSAVVATG 272
Query: 593 APVMFVGCGQSYTDLKKLNVKSIVKTLL 620
A + F+G G+ +L+ N K V +L
Sbjct: 273 ATIKFIGTGEKIDELETFNAKRFVSRIL 300
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 107/199 (53%), Gaps = 21/199 (10%)
Query: 428 KSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RL--QVPIFEKG-YEKDPA 483
K+T+LAK+A + + V++AA DTFR+GA +QL + RL +V + + DPA
Sbjct: 118 KTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPA 177
Query: 484 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKL------IYLNNPDLVLFVGEA 537
V +AI++A D++L+DTAGR+Q+ LM L K+ + + P VL V +A
Sbjct: 178 SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDA 237
Query: 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597
G + V Q +F+ K+AD+S GI+LTK D+ K G L++ + P+
Sbjct: 238 TTGQNGVIQAEEFS-KVADVS---------GIILTKMDST-SKGGIGLAIKELLNIPIKM 286
Query: 598 VGCGQSYTDLKKLNVKSIV 616
+G G+ DL ++ +
Sbjct: 287 IGVGEKVDDLLAFDIDQYI 305
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 21/298 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G ++ DKA +E +K L+ L++ +V ++ L + L+ +K ++
Sbjct: 15 LTGSSSYDKA-VEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFI 73
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
+ + L + + ++ D + PY K+T K+AY+ +
Sbjct: 74 KIVYDELSNLFGGDKEPKVIPD-------KIPYVIMLVGVQGTGKTTTAGKLAYFYKKKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
V + D +R A+EQL+ +++ VP++ + EKD +AK +++ ++++V
Sbjct: 127 FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIV 186
Query: 504 DTAGRMQDNE--PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561
DTAGR E L+ + + PD V V +A +G A D SKFNQ
Sbjct: 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ--------- 237
Query: 562 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 619
I I++TK D K G ALS V +GA + F+G G+ +L+ N + V L
Sbjct: 238 -ASKIGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 135/298 (45%), Gaps = 21/298 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G ++ DKA +E +K L+ L++ +V ++ L + L+ +K ++
Sbjct: 15 LTGSSSYDKA-VEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFI 73
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYXXXXXXXXXXXKSTNLAKVAYWLLQHK 443
+ + L + + ++ D + PY K+T K+AY+ +
Sbjct: 74 KIVYDELSNLFGGDKEPKVIPD-------KIPYVIMLVGVQGTGKATTAGKLAYFYKKKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
V + D +R A+EQL+ +++ VP++ + EKD +AK +++ ++++V
Sbjct: 127 FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIV 186
Query: 504 DTAGRMQDNE--PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561
DTAGR E L+ + + PD V V +A +G A D SKFNQ
Sbjct: 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ--------- 237
Query: 562 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTL 619
I I++TK D K G ALS V +GA + F+G G+ +L+ N + V L
Sbjct: 238 -ASKIGTIIITKMDG-TAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 415 PYXXXXXXXXXXXKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474
P+ K+T+ K+A + SV++AA DTFR+ A+EQL+ R+ +
Sbjct: 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 163
Query: 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNP 528
DPA VA +A+ A DVV++DTAGR+ + LM L K+ + + P
Sbjct: 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAP 223
Query: 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMV 588
L V +A G + + Q F + + + GI+LTK D K G L++
Sbjct: 224 HETLLVIDATTGQNGLVQAKIFKEAVN----------VTGIILTKLDG-TAKGGITLAIA 272
Query: 589 YVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
G P+ F+G G+ DL+ + ++ V+ LL
Sbjct: 273 RELGIPIKFIGVGEKAEDLRPFDPEAFVEVLL 304
>pdb|2FH5|A Chain A, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|1 Chain 1, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 185
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 62/99 (62%), Gaps = 5/99 (5%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
M++ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 10 MVDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 64
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY 99
+ N+ LVFV +Q+IL L YVD L+ + + F + Y
Sbjct: 65 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKY 103
>pdb|2PX0|A Chain A, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|B Chain B, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|C Chain C, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|D Chain D, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|E Chain E, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|F Chain F, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|G Chain G, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX0|H Chain H, Crystal Structure Of Flhf Complexed With GmppnpMG(2+)
pdb|2PX3|A Chain A, Crystal Structure Of Flhf Complexed With GtpMG(2+)
pdb|3SYN|A Chain A, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|B Chain B, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|C Chain C, Crystal Structure Of Flhf In Complex With Its Activator
pdb|3SYN|D Chain D, Crystal Structure Of Flhf In Complex With Its Activator
Length = 296
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 428 KSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486
K+T LAK+A +L+ + DT+R AVEQL+T+A LQ P+ E Y K+ A
Sbjct: 118 KTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYTKEEFQQA 176
Query: 487 KEAIQEATRNGSDVVLVDTAGR 508
KE E D V VDTAGR
Sbjct: 177 KELFSEY-----DHVFVDTAGR 193
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 442 HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVV 501
H S++ D+ +G Q R L VP+F K + AI++A NG++++
Sbjct: 67 HVASIIFGQHDSPVTGIAPQ----CRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANII 122
Query: 502 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547
V +AG++ D L K I L + VL + A GND + L
Sbjct: 123 NV-SAGQLTDAGEADTWLEKAIQLCQENNVLLI--AATGNDGCECL 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,287,498
Number of Sequences: 62578
Number of extensions: 559759
Number of successful extensions: 1831
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 42
length of query: 621
length of database: 14,973,337
effective HSP length: 105
effective length of query: 516
effective length of database: 8,402,647
effective search space: 4335765852
effective search space used: 4335765852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)