BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007024
(621 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DBG7|SRPR_MOUSE Signal recognition particle receptor subunit alpha OS=Mus musculus
GN=Srpr PE=1 SV=1
Length = 636
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 278/664 (41%), Positives = 392/664 (59%), Gaps = 72/664 (10%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K E+ N
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKTK---EKAKN------ 166
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNK 223
+ RG K E + + + +G++ G EN + K ++ K
Sbjct: 167 -------NKKRGAKKEGSDGTLATSKTAPAEKSGLSAGPENGELSKEELIRRKREEFIQK 219
Query: 224 GGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------N 272
GK D + PK+K K RVW+ +K LD++ P NG+ N
Sbjct: 220 HGKGLDKSSKSTKSDTPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDIN 278
Query: 273 IEVEAADHGESMMDKEEVFSSDSESEEDEEVGKHNKPDAKK--TGWFSSMFQSIAGKANL 330
+ + G + D D S +DE ++ KP A K G M + + G +L
Sbjct: 279 L-IRGTGPGGQLQD------LDCSSSDDEGATQNTKPSATKGTLGGMFGMLKGLVGSKSL 331
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 332 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 391
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 392 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 451
Query: 451 CDTFRSGAVEQLRTHARRL-------------QVPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 452 CDTFRAGAVEQLRTHTRRLTALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 511
Query: 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 512 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 571
Query: 558 SSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVK 617
S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K++V
Sbjct: 572 SMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVA 631
Query: 618 TLLK 621
L+K
Sbjct: 632 ALMK 635
>sp|Q9U5L1|SRPR_DROME Signal recognition particle receptor subunit alpha homolog
OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
Length = 614
Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/645 (43%), Positives = 387/645 (60%), Gaps = 55/645 (8%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ ++IFT+GG++LW GN+ S I++LIR +LEER+ A + Y+ A ++
Sbjct: 1 MLDFVVIFTKGGVVLWHSNASGNSF-ASCINSLIRGVILEERNTEAKY-YEEDHLA--VQ 56
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIY-DPKRTDYSDFDEMFRQLRKE 119
+ NEL LV+ A++Q+++ L Y+D LA M+ +F E Y D + D DFD +R++
Sbjct: 57 FKLDNELDLVYAAIFQKVIKLNYLDGFLADMQAAFKEKYGDIRLGDDYDFDREYRRVLSA 116
Query: 120 AEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSDNMRGRKLE 179
AE + + K+ + + N +K S ++ DD R
Sbjct: 117 AEEASAKQVKAPKTMRSYNESQK-------------SKKTVASMIQDDKKPVEKR----- 158
Query: 180 NGHSNVGNVEIEESRVTGVANGKEN-TSSNIGAFDVSKLQKLRNKGGKKTDTVVSKGSNP 238
V I+E+ + T S + + K +KLR K T S
Sbjct: 159 --------VNIQEAPPPSKSQPSSPPTGSPMDKIIMEKRRKLREKL-TPTKKTSPSDSKS 209
Query: 239 DPKKKITKKNRVWD---DSPPESKLDFT--DPAGGNGSNIEVEAADHGESMMDKEEVFSS 293
+K KK RVWD +S + LD + P NI E + ++ +V S
Sbjct: 210 SKPEKAGKKPRVWDLGGNSKDAALLDRSRDSPDDVQYQNINSELVGTMQGVIRDLDVESE 269
Query: 294 DSESEEDE----EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTK 349
D ED E + + K G S F+ I G + ADL+PAL+ ++D L++K
Sbjct: 270 DEADNEDASSEGEAEEQVQSKKGKRGGLLSYFKGIVGAKTMSLADLQPALEKMRDHLISK 329
Query: 350 NVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAA 409
NVA EIA KLC+SVAASL+GK++ +F I+S V+ A+ E+LVRIL+P+R IDI+RD +
Sbjct: 330 NVASEIAAKLCDSVAASLDGKQMGTFDSIASQVKEALTESLVRILSPKRRIDIIRDALES 389
Query: 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL 469
K +PY ++F GVNGVGKSTNLAK+ +WL+++ +V++AACDTFR+GAVEQLRTH R L
Sbjct: 390 KRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHL 449
Query: 470 Q-------------VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516
V ++EKGY KD A +A EAI+ A DVVLVDTAGRMQDNEPLM
Sbjct: 450 NALHPAAKHDGRNMVQLYEKGYGKDAAGIAMEAIKFAHDTRVDVVLVDTAGRMQDNEPLM 509
Query: 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576
R+LSKLI +NNPDLVLFVGEALVGN+AVDQL KFNQ LAD SS+ NP +IDGI+LTKFDT
Sbjct: 510 RSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVLTKFDT 569
Query: 577 IDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621
IDDKVGAA+SM Y++G P++FVG GQ+Y DLK +NV ++V +L+K
Sbjct: 570 IDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLMK 614
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 275/668 (41%), Positives = 390/668 (58%), Gaps = 77/668 (11%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAE--------ELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
F +L +EAE ++ + + S++ KP+ ++ + G+ K + G
Sbjct: 116 DFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNNKKNKGAKK 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
DG + E +G+ G EN ++SK +++R
Sbjct: 176 EGSDGPLATSKAAPAEK---------------SGLPVGPENGE------ELSKEEQIRRK 214
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVW--DDSPPESKLDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW S + LD++ P +N
Sbjct: 215 REEFIQKHGRGMEKSSKSSKSDAPKEKGKKAPRVWALGGSANKEVLDYSTPT----TNGA 270
Query: 275 VEAADHGESMMDK-----EEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAG 326
EAA + + + ++ D S +DE +++ KP A K G M + + G
Sbjct: 271 PEAAPPEDINLIRGTGPGRQLQDLDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVG 330
Query: 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAM 386
+L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A+
Sbjct: 331 SKSLTREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQAL 390
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
+E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++ SV
Sbjct: 391 QESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSV 450
Query: 447 MMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEA 493
++AACDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A
Sbjct: 451 LIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFA 510
Query: 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553
G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+
Sbjct: 511 RNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRA 570
Query: 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 613
LAD S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K
Sbjct: 571 LADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAK 630
Query: 614 SIVKTLLK 621
++V L+K
Sbjct: 631 AVVAALMK 638
>sp|P08240|SRPR_HUMAN Signal recognition particle receptor subunit alpha OS=Homo sapiens
GN=SRPR PE=1 SV=2
Length = 638
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 276/664 (41%), Positives = 389/664 (58%), Gaps = 70/664 (10%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS---------DFDE 111
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S DF
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 112 MFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGSANDDGDSD 171
F +L +EAE +S ++ P K + + K R + G + +
Sbjct: 116 DFLRLLREAE-------ESSKIRAPTTMKKFEDSEKAKKPV-RSMIETRGEKPKEKAKNS 167
Query: 172 NMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-------NKG 224
+G K E + + + +G+ G EN ++SK + +R K
Sbjct: 168 KKKGAKKEGSDGPLATSKPVPAEKSGLPVGPEN------GVELSKEELIRRKREEFIQKH 221
Query: 225 GKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGS---------NI 273
G+ + + PK+K K RVW+ +K LD++ P NG+ N+
Sbjct: 222 GRGMEKSNKSTKSDAPKEKGKKAPRVWELGGCANKEVLDYSTPTT-NGTPEAALSEDINL 280
Query: 274 EVEAADHGESMMDKEEVFSSDSESEEDEEVGKHN-KPDAKK--TGWFSSMFQSIAGKANL 330
+ G + D D S +DE +++ KP A K G M + + G +L
Sbjct: 281 -IRGTGSGGQLQD------LDCSSSDDEGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSL 333
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEAL 390
+ D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+ A++E+L
Sbjct: 334 SREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESL 393
Query: 391 VRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450
V+IL P+R +D+LRD+ A+ +++PYVV F GVNGVGKSTNLAK+++WLL++ SV++AA
Sbjct: 394 VQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAA 453
Query: 451 CDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQEATRNG 497
CDTFR+GAVEQLRTH RRL V +FEKGY KD A +A EAI A G
Sbjct: 454 CDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQG 513
Query: 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557
DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN+ LAD
Sbjct: 514 FDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 573
Query: 558 SSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVK 617
S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN K++V
Sbjct: 574 SMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVA 633
Query: 618 TLLK 621
L+K
Sbjct: 634 ALMK 637
>sp|P06625|SRPR_CANFA Signal recognition particle receptor subunit alpha OS=Canis
familiaris GN=SRPR PE=2 SV=2
Length = 638
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 389/670 (58%), Gaps = 82/670 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLK 60
ML+ IF++GGL+LW + + ++ G P++ LIRS LL+ER G SF ++ A TLK
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTG-PVNALIRSVLLQERGGNNSFTHE----ALTLK 55
Query: 61 WTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYS------------- 107
+ N+ LVFV +Q+IL L YVD L+ + + F + Y + S
Sbjct: 56 YKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQN 115
Query: 108 DFDEMFRQLRKEAEARA----EELKKSKQVTKPMNNLKKQGGQLQKGGFERGSNRSGGGS 163
DF + R+ + ++ RA ++ + S++ KP+ ++ + G+ K + +
Sbjct: 116 DFLRLLREREESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKE 175
Query: 164 ANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLR-- 221
++D L G + V E+S G+ G EN ++SK + +R
Sbjct: 176 SSDG---------PLATGKA----VPAEKS---GLPAGPEN------GVELSKEELIRRK 213
Query: 222 -----NKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPESK--LDFTDPAGGNGSNIE 274
K G+ + + PK+K K RVW +K LD++ P +
Sbjct: 214 REEFIQKHGRGLEKSSKSTKSDAPKEKGKKAPRVWALGGCANKEVLDYSAPTTNGAPDAA 273
Query: 275 -------VEAADHGESMMDKEEVFSSDSESEEDEEVGKH-NKPDAKK--TGWFSSMFQSI 324
+ G + D D S +DEE ++ +KP A K G M + +
Sbjct: 274 PPEDINLIRGTGPGGQLQDL------DCSSSDDEETAQNASKPSATKGTLGGMFGMLKGL 327
Query: 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA 384
G +L + D+E L ++D L+ KNVA +IA +LCESVA LEGK + +F+ ++S V+
Sbjct: 328 VGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQ 387
Query: 385 AMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444
A++E+LV+IL P+R +D+LRD+ A+ ++PYVV F GVNGVGKSTNLAK+++WLL++
Sbjct: 388 ALQESLVQILQPQRRVDMLRDIMDAQRHQRPYVVTFCGVNGVGKSTNLAKISFWLLENGF 447
Query: 445 SVMMAACDTFRSGAVEQLRTHARRLQ-------------VPIFEKGYEKDPAIVAKEAIQ 491
SV++AACDTFR+GAVE +RTH RRL V +FEKGY KD A +A EAI
Sbjct: 448 SVLIAACDTFRAGAVEHVRTHTRRLSALHPPEKHAGPTMVQLFEKGYGKDAAGIAMEAIA 507
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
A G DVVLVDTAGRMQDN PLM AL+KLI +N PDLVLFVGEALVGN+AVDQL KFN
Sbjct: 508 FARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFN 567
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ LAD S + P+LIDGI+LTKFDTIDDKVGAA+SM Y++ P++FVG GQ+Y DL+ LN
Sbjct: 568 RALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLN 627
Query: 612 VKSIVKTLLK 621
K++V L+K
Sbjct: 628 AKAVVAALMK 637
>sp|Q54ZR7|SRPR_DICDI Signal recognition particle receptor subunit alpha OS=Dictyostelium
discoideum GN=srpr PE=3 SV=1
Length = 615
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/312 (59%), Positives = 238/312 (76%), Gaps = 3/312 (0%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
AK F F + G +DK DLEP L K L KNVA ++A+K+ +S+ LEGK
Sbjct: 304 AKPVSGFMKYFNVLTGNRVIDKQDLEPILADFKLHLTKKNVAPDVADKIVQSIGTGLEGK 363
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
KLA+F ++S+V+ ME+ + RILTP+R+IDILR+V A K +R PY +VF GVNGVGKST
Sbjct: 364 KLATFQGVTSVVKQQMEDTITRILTPKRNIDILREVQAVKGKR-PYSIVFSGVNGVGKST 422
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
NLAKV YWL + M+AACDTFRSGA+EQL+THA RL V +FE+GY KD A VA++AI
Sbjct: 423 NLAKVCYWLTANGYKCMLAACDTFRSGAIEQLKTHADRLNVHLFERGYSKDAASVAQDAI 482
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
A G DVVL+DT GRMQ+NEPLM+ALSKL+ NN DLVLFVGEALVGND VDQL+KF
Sbjct: 483 AFAKDTGYDVVLIDTTGRMQNNEPLMKALSKLVNQNNVDLVLFVGEALVGNDGVDQLTKF 542
Query: 551 NQKLADLSSSPNPQL--IDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608
++ L+ L+++ + IDGI+LTKFDTIDDKVGAA+SMVY +G P++F+G GQ+YTDLK
Sbjct: 543 DKSLSLLANTTQTHIRTIDGIILTKFDTIDDKVGAAISMVYSTGHPILFLGTGQNYTDLK 602
Query: 609 KLNVKSIVKTLL 620
++N+KS+VK+LL
Sbjct: 603 RMNIKSVVKSLL 614
>sp|O43032|SRPR_SCHPO Signal recognition particle receptor subunit alpha homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=srp101 PE=3 SV=1
Length = 547
Score = 254 bits (648), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/305 (43%), Positives = 188/305 (61%), Gaps = 15/305 (4%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
I GK L + DL P LK +++ L KNVA IA +LCESV ASL KK+ SF + + V
Sbjct: 251 IGGKY-LKEEDLSPILKQMQEHLTKKNVANSIALELCESVKASLINKKVGSFDTVKNTVN 309
Query: 384 AAMEEALVRILTPRRSIDILRDVHAA-KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442
A + L +ILTP S+D+L + + K + +PY + +GVNGVGKST LAK+AYWLL +
Sbjct: 310 KAFRDRLTQILTPSTSLDLLHSIRSVRKNENRPYTISLIGVNGVGKSTTLAKIAYWLLSN 369
Query: 443 KVSVMMAACDTFRSGAVEQLRTHARRLQ------VPIFEKGYEKDPAIVAKEAIQEATRN 496
+++AACDTFRSGA+EQL H + LQ + +F +GY KD + V K A++ A +N
Sbjct: 370 NFRILVAACDTFRSGAIEQLGVHVKNLQSLKGSSIELFAQGYGKDSSFVVKNAVEYAKQN 429
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556
DV+L+DTAGR +++ LM +L K D + V EALVG D++ Q F A
Sbjct: 430 SFDVILIDTAGRRHNDQRLMGSLEKFTKATKLDKIFQVAEALVGTDSLAQAKHFQ---AS 486
Query: 557 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIV 616
L P +DG +++K DT+ VG + MVY P++FVG GQ+Y+DL+ L+V +V
Sbjct: 487 LYHRP----LDGFIISKVDTVGQLVGVMVGMVYAVRVPIIFVGIGQTYSDLRTLSVDWVV 542
Query: 617 KTLLK 621
L+K
Sbjct: 543 DQLMK 547
Score = 39.7 bits (91), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLL-EERSGLASFNYDSAGAAYTL 59
M++ I +GG++LW K+ + + + L L E+R+ + +D YT+
Sbjct: 1 MIDLFAIVNKGGIVLW--KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDR----YTM 54
Query: 60 KWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKRTDYSDFDEMFRQLRKE 119
++ + +VFV V+Q + + Y LL F ++ K D RQ+ E
Sbjct: 55 QYQEATQYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED--------RQVPNE 106
Query: 120 AEA 122
AE
Sbjct: 107 AEV 109
>sp|P32916|SRPR_YEAST Signal recognition particle receptor subunit alpha homolog
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SRP101 PE=1 SV=2
Length = 621
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 156/445 (35%), Positives = 243/445 (54%), Gaps = 55/445 (12%)
Query: 218 QKLRNKGGKKTDTVVSKGSNPDPKKKITKKNRVWDDSPPE--SKLDFTDPAGGNGSNIEV 275
+KLR+ GKK T N +K + + D+ E +KLDF+ N S + +
Sbjct: 189 KKLRDTKGKKQST-----GNVGSGRKWGRDGGMLDEMNHEDAAKLDFSSSNSHNSSQVAL 243
Query: 276 EAADHGESMMDKEEVFS------SDSESEEDEEVGKHNKPDAKKTGWFSSMF----QSIA 325
++ + +S D+ E D S +E+ N +AK +G+ S+ F + +
Sbjct: 244 DSTINKDSFGDRTEGGDFLIKEIDDLLSSHKDEITSGN--EAKNSGYVSTAFGFLQKHVL 301
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G ++++DL+ L+ L +L+TKNVA E A+ L + V+ L G K A++T + + + +
Sbjct: 302 GNKTINESDLKSVLEKLTQQLITKNVAPEAADYLTQQVSHDLVGSKTANWTSVENTARES 361
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRK------PYVVVFVGVNGVGKSTNLAKVAYWL 439
+ +AL +ILTP S+D+LR++ + + ++ PYV VGVNGVGKSTNL+K+A+WL
Sbjct: 362 LTKALTQILTPGVSVDLLREIQSKRSKKDEEGKCDPYVFSIVGVNGVGKSTNLSKLAFWL 421
Query: 440 LQHKVSVMMAACDTFRSGAVEQLRTHARRL----------------------QVPIFEKG 477
LQ+ V++ ACDTFRSGAVEQLR H L V +FE G
Sbjct: 422 LQNNFKVLIVACDTFRSGAVEQLRVHVENLAQLMDDSHVRGSKNKRGKTGNDYVELFEAG 481
Query: 478 YEKDPAI--VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535
Y + +AK+AI+ + D+VL+DTAGR ++ LM L PD ++ VG
Sbjct: 482 YGGSDLVTKIAKQAIKYSRDQNFDIVLMDTAGRRHNDPTLMSPLKSFADQAKPDKIIMVG 541
Query: 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPV 595
EALVG D+V Q FN + +D +++K DT+ + +G ++MVY +G P+
Sbjct: 542 EALVGTDSVQQAKNFNDAFG------KGRNLDFFIISKCDTVGEMLGTMVNMVYATGIPI 595
Query: 596 MFVGCGQSYTDLKKLNVKSIVKTLL 620
+FVG GQ+YTDL+ L+VK V TL+
Sbjct: 596 LFVGVGQTYTDLRTLSVKWAVNTLM 620
>sp|Q57739|FTSY_METJA Signal recognition particle receptor FtsY OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=ftsY PE=3 SV=1
Length = 409
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 122/287 (42%), Positives = 174/287 (60%), Gaps = 12/287 (4%)
Query: 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393
D+E L+ L+ L+ +VA E+ EKL E++ L G+K++ + I A++ A+ I
Sbjct: 122 DIEDVLEELEIALLEADVALEVVEKLIENIKNELVGRKISPDDNVEEITINAVKNAIKNI 181
Query: 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453
L+ + IDI + K + KP V+VFVG+NG GK+T +AK+AY L Q SV++AA DT
Sbjct: 182 LSQEK-IDIEEIIKKNKAEGKPTVIVFVGINGTGKTTTIAKLAYKLKQKGYSVVLAAGDT 240
Query: 454 FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE 513
FR+GA+EQL HA+ + V + + D A V +AIQ A G DVVL DTAGR N
Sbjct: 241 FRAGAIEQLEQHAKNVGVKVIKHKPGADSAAVIYDAIQHAKARGIDVVLADTAGRQATNV 300
Query: 514 PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573
LM + K++ + PDLV+FVG+AL GNDAV Q +FN+ + IDGI+LTK
Sbjct: 301 NLMEEIKKVVRVTKPDLVIFVGDALTGNDAVYQAEEFNRAVN----------IDGIILTK 350
Query: 574 FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
D D K GAALS+ Y G P++++G GQ Y DL + + +V+ L
Sbjct: 351 VDA-DAKGGAALSIGYAIGKPILYLGVGQRYQDLIEFDADWMVRKLF 396
>sp|Q8TIN7|FTSY_METAC Signal recognition particle receptor FtsY OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=ftsY PE=3 SV=1
Length = 417
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 178/293 (60%), Gaps = 19/293 (6%)
Query: 330 LDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEG--KKLASFTRISSIVQAAME 387
LD DLE L L+ L+ ++A ++E + ESV L G K++ S T IV+AA++
Sbjct: 140 LDNKDLEEPLWELEMGLLESDLALSVSEAIVESVKNQLTGTTKRIGSNT--GEIVEAALK 197
Query: 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447
+A++ +++ + D V K + KP +VFVG+NG GK+T+++K+ LL+ SV+
Sbjct: 198 KAILEVVSAN-TFDFDEYV---KNREKPVHIVFVGINGTGKTTSISKITNRLLKSGYSVV 253
Query: 448 MAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAG 507
+AA DTFR+GA++QL HA RL V + + DPA V +A+Q A + D VL DTAG
Sbjct: 254 LAAGDTFRAGAIDQLGIHANRLGVKMIKHQAGADPAAVIYDAVQYAKAHKIDFVLSDTAG 313
Query: 508 RMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567
RM N LM + K+ ++ PDL++FV EA+ GNDAV++ ++FN+ + ID
Sbjct: 314 RMHTNMNLMAQMEKICRVSTPDLIIFVDEAVAGNDAVERAAQFNEAVP----------ID 363
Query: 568 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
G +LTK D D K GAA+S+ Y++G P++F G GQ Y DLKK + + V L
Sbjct: 364 GSILTKIDA-DAKGGAAISIAYITGKPILFFGIGQGYEDLKKFDPEWFVDQLF 415
>sp|P27414|FTSY_SULAC Signal recognition particle receptor FtsY OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=ftsY PE=3 SV=1
Length = 369
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 176/306 (57%), Gaps = 19/306 (6%)
Query: 302 EVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCE 361
+ G+ NK + K+ S F + K + + DL ++ L+ +L+ +V+ E+ EK+ E
Sbjct: 68 QTGQENKQENKR-----SFFDFLKYKT-IKEDDLNDVIEELRFQLLDSDVSYEVTEKILE 121
Query: 362 SVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFV 421
+ +L GKK++ + IV +++++ ILT + D++ + ++ +KP+V++F
Sbjct: 122 DLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSG--KKPFVIIFF 179
Query: 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481
GVNGVGK+T +AKV L ++ +S ++AA DTFR+ A EQL HA +L+V + Y D
Sbjct: 180 GVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGAD 239
Query: 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541
PA VA +AI A DVVL+DTAGRM + L+ L +++ + PD + + ++L G+
Sbjct: 240 PASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAKPDFRILILDSLAGS 299
Query: 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCG 601
DA++Q F + D ++LTK D D K G ALS+ Y PV+++G G
Sbjct: 300 DALEQARHFENNVG----------YDAVILTKVDA-DAKGGIALSLAYELKKPVVYMGVG 348
Query: 602 QSYTDL 607
Q+Y DL
Sbjct: 349 QNYDDL 354
>sp|D4GYW6|FTSY_HALVD Signal recognition particle receptor FtsY OS=Haloferax volcanii
(strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 /
NCIMB 2012 / VKM B-1768 / DS2) GN=ftsY PE=3 SV=1
Length = 456
Score = 175 bits (444), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 174/324 (53%), Gaps = 22/324 (6%)
Query: 297 SEEDEEVGKHNKPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIA 356
+EEDE+ D+ G GK +++ DLE L L+ L+ +V ++A
Sbjct: 151 TEEDED-------DSSGPGRLRRAAAFATGKVVIEEEDLEDPLWELEMALLQSDVEMQVA 203
Query: 357 EKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416
E++ E++ L G+ +V A+ +AL +++ + D + + E KP
Sbjct: 204 EEILETIREKLIGETRKQVESTGQLVSEALHDALYEVISVGQ-FDFDQRI---AEADKPV 259
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
++F G+NGVGK+T +AK+A + + S ++A DT+R+GA EQ+R HA L +
Sbjct: 260 TLIFTGINGVGKTTTIAKLAKYFEKQGYSTVLANGDTYRAGANEQIREHAEALDKKLIAH 319
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536
DPA V + ++ A + D+VL DTAGR+ + LM L K+ + PDL LFV E
Sbjct: 320 EQGGDPAAVIYDGVEYAEAHDIDIVLGDTAGRLHTSNDLMAQLEKIDRVVGPDLTLFVDE 379
Query: 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596
A+ G DAV++ +FN A IDG +LTK D D GAA+S+ YV+G P++
Sbjct: 380 AVAGQDAVERARQFNDAAA----------IDGAILTKADA-DSNGGAAISIAYVTGKPIL 428
Query: 597 FVGCGQSYTDLKKLNVKSIVKTLL 620
F+G GQ Y ++K + + +V+ LL
Sbjct: 429 FLGVGQGYDHIEKFDPEQMVERLL 452
>sp|Q9HJ93|FTSY_THEAC Signal recognition particle receptor FtsY OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=ftsY PE=3 SV=1
Length = 288
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 148/280 (52%), Gaps = 32/280 (11%)
Query: 351 VAEEIAEKLCESVAASLEGKKLASFTR----------ISSIVQAAMEEALVRILTPRRSI 400
VA+EI KL E+ + + LAS R + ++ +++ E + P
Sbjct: 23 VADEIPLKLVEADVSLEAAEDLASLVRNKLKEDTTLDPNEVLSSSILE-----MMPEYKF 77
Query: 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE 460
D+L +KP+VV+F+G+NG GK+T + K A++L ++ SV++AA DTFR+GA+E
Sbjct: 78 DVL------NVNKKPFVVLFLGINGTGKTTTIGKFAHYLKRNGKSVVIAAADTFRAGAIE 131
Query: 461 QLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALS 520
Q+ R + DP+ VA +AI+ A D VL+DTAGRM N+ L+ +
Sbjct: 132 QISLIGREAGTEVIRHDRGSDPSSVAFDAIEHARARNIDYVLIDTAGRMNTNKNLLDEMK 191
Query: 521 KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDK 580
K+ ++ PDL L V +A+ G D+V+Q F + + DG+++TK DT D +
Sbjct: 192 KIKRVSKPDLTLLVIDAVSGQDSVNQARMFEENVG----------YDGVIVTKLDT-DAR 240
Query: 581 VGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
G+ LS+ + PV+FV GQ D+ + V+ L+
Sbjct: 241 GGSILSIYHDLKKPVLFVCTGQGLDDIMPFDRNWYVRKLI 280
>sp|Q54431|SRP54_STRMU Signal recognition particle protein OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=ffh PE=3 SV=3
Length = 516
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 156/299 (52%), Gaps = 19/299 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
T +F+++ GK L + D++ K ++ L+ +VA + ++ + V G ++
Sbjct: 7 TERLQGVFKNLRGKRKLSEKDVQEVTKEIRLALLEADVALPVVKEFIKRVRKRAVGHEVI 66
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
S + + E L +L + K + P +++ VG+ G GK+T
Sbjct: 67 DTLDPSQQIIKIVNEELTAVLGSETA-------EIEKSSKIPTIIMMVGLQGAGKTTFAG 119
Query: 434 KVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492
K+A L++ + +M A D +R A++QL+T +++ VP+F+ G E + + + +
Sbjct: 120 KLANKLVKEENARPLMIAADIYRPAAIDQLKTLGQQINVPVFDMGTEHSAVEIVSQGLAQ 179
Query: 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552
A N +D VL+DTAGR+Q +E LM L + L NP+ +L V ++++G +A + +FNQ
Sbjct: 180 AKENRNDYVLIDTAGRLQIDEKLMTELRDIKALANPNEILLVVDSMIGQEAANVAREFNQ 239
Query: 553 KLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+L + G++LTK D D + GAALS+ ++G P+ F G G+ TD++ +
Sbjct: 240 QLE----------VTGVILTKIDG-DTRGGAALSVRQITGKPIKFTGTGEKITDIETFH 287
>sp|P74214|SRP54_SYNY3 Signal recognition particle protein OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ffh PE=3 SV=1
Length = 482
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 163/302 (53%), Gaps = 33/302 (10%)
Query: 320 MFQSIAGKANLDKADLEPALKALK--DRLMTKNVAEEIAEKLCESVAASLEGKKLASFTR 377
MF ++A + LE A K L+ D++ N+ E + E +AA + + + F
Sbjct: 1 MFDALADR-------LEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGF-- 51
Query: 378 ISSIVQAAMEEALVRILTP-RRSIDILRD----------VHAAKEQRKPYVVVFVGVNGV 426
I + Q A+ ++ + P ++ I I+ D V A+ ++ P V++ G+ G
Sbjct: 52 IKDVEQKALGADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGT 111
Query: 427 GKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486
GK+T AK+A +L + K S +M A D +R A++QL+T +++ VP+F+ G + +P +A
Sbjct: 112 GKTTATAKLALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIA 171
Query: 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546
++ +++A G D VL+DTAGR+Q + +M L+++ + PD L V +A+ G +A +
Sbjct: 172 RQGVEKAKELGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANL 231
Query: 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606
F++++ I G +LTK D D + GAALS+ +SG P+ FVG G+
Sbjct: 232 THTFHEQIG----------ITGAILTKLDG-DTRGGAALSVRQISGQPIKFVGVGEKVEA 280
Query: 607 LK 608
L+
Sbjct: 281 LQ 282
>sp|P56005|SRP54_HELPY Signal recognition particle protein OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=ffh PE=3 SV=1
Length = 448
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 158/296 (53%), Gaps = 35/296 (11%)
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA----AM 386
D+ L+ AL LK L+ +V ++A +L KK+ S T+++ I + A+
Sbjct: 21 DEKALDRALDELKKTLLKNDVHHKVARELL---------KKVESQTKLNGIGKQQFLDAL 71
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L V
Sbjct: 72 EKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKV 125
Query: 447 MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVLVD 504
++ ACD R AVEQL+ ++ V +F YE++ ++ +A A++ A DV+LVD
Sbjct: 126 LLCACDLQRLAAVEQLKVLGEQVGVEVF---YEENKSVKEIASNALKRAKEAQFDVLLVD 182
Query: 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 183 SAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIG--------- 233
Query: 565 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ G++L+KFD+ D K G AL + Y G P+ F+G G+ DL + IV L+
Sbjct: 234 -VSGVVLSKFDS-DSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLM 287
>sp|P49971|SR541_SOLLC Signal recognition particle 54 kDa protein 1 OS=Solanum
lycopersicum PE=3 SV=1
Length = 496
Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 152/311 (48%), Gaps = 19/311 (6%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S Q ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMSTNIKKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ I+Q A+ L +IL P + L+ + KP VV+FVG+ G GK+T
Sbjct: 64 DLAAGHNKRRIIQQAVYNELCKILDPGKPAFTLK-------KGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-EKDPAIVAKEA 489
K AY + + DTFR+GA +QL+ +A + ++P + Y E DP +A +
Sbjct: 117 TCTKYAYHHQKRGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSSYTESDPVKIAVDG 176
Query: 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549
++ + D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ
Sbjct: 177 VETFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEAQKPDLVIFVMDSSIGQAAFDQAQA 236
Query: 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKK 609
F Q +A + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 237 FRQSVA----------VGAVIVTKMDG-HAKGGGALSRVAATKSPVIFIGTGEHMDEFEV 285
Query: 610 LNVKSIVKTLL 620
+VK V LL
Sbjct: 286 FDVKPFVSRLL 296
>sp|P49972|SR542_SOLLC Signal recognition particle 54 kDa protein 2 OS=Solanum
lycopersicum PE=2 SV=1
Length = 499
Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 148/306 (48%), Gaps = 18/306 (5%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G S Q ++ +D+ L L + L+ +V ++ + ++ + LA+
Sbjct: 8 GSISRALQQMSNATIIDEKVLNECLNEITRALLQADVQFKLVRDMTTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I+Q A+ L +IL P + ++ KP +V+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIQQAVFNELCKILDPGKP-------SFTPKKGKPSIVMFVGLQGSGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A + ++
Sbjct: 121 YAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVDGVETFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +
Sbjct: 181 KENCDLIIVDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKS 614
A + +++TK D K G ALS V + +PV+F+G G+ + + +VK
Sbjct: 241 A----------VGAVIVTKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKP 289
Query: 615 IVKTLL 620
V LL
Sbjct: 290 FVSRLL 295
>sp|Q55311|SRP54_SYNE7 Signal recognition particle protein OS=Synechococcus elongatus
(strain PCC 7942) GN=ffh PE=3 SV=1
Length = 485
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 155/295 (52%), Gaps = 18/295 (6%)
Query: 326 GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAA 385
G+ + +++++ ALK ++ L+ +V + ++ V G ++ S R
Sbjct: 18 GQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAVGTQVISGIRPDQQFIKV 77
Query: 386 MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445
+ + LV+++ V A+ + P V++ G+ G GK+T AK+A L + S
Sbjct: 78 VYDELVQVMGETH-------VPLAQAAKAPTVILMAGLQGAGKTTATAKLALHLRKEGRS 130
Query: 446 VMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505
++ A D +R A++QL T +++ VP+FE G + +P +A++ +++A + G D V+VDT
Sbjct: 131 TLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQEGIDTVIVDT 190
Query: 506 AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565
AGR+Q + +M L+++ P VL V ++++G +A F++++
Sbjct: 191 AGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG---------- 240
Query: 566 IDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
I G +LTK D D + GAALS+ VSG P+ FVG G+ L+ + + + +L
Sbjct: 241 ITGAILTKLDG-DSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRIL 294
>sp|P37107|SR54C_ARATH Signal recognition particle 54 kDa protein, chloroplastic
OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
Length = 564
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/295 (29%), Positives = 155/295 (52%), Gaps = 18/295 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLA 373
TG + + + G+ L K ++ ++ ++ L+ +V+ + + +SV+ G +
Sbjct: 82 TGGLEAAWSKLKGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVI 141
Query: 374 SFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLA 433
+ + + + LV+++ S ++ AK P V++ G+ GVGK+T A
Sbjct: 142 RGVKPDQQLVKIVHDELVKLMGGEVS-----ELQFAKS--GPTVILLAGLQGVGKTTVCA 194
Query: 434 KVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493
K+A +L + S M+ A D +R A++QL ++ VP++ G + PA +AK+ ++EA
Sbjct: 195 KLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEA 254
Query: 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553
+N DVV++DTAGR+Q ++ +M L + NP VL V +A+ G +A ++ FN +
Sbjct: 255 KKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVE 314
Query: 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608
+ I G +LTK D D + GAALS+ VSG P+ VG G+ DL+
Sbjct: 315 IG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMEDLE 358
>sp|P49967|SR543_ARATH Signal recognition particle 54 kDa protein 3 OS=Arabidopsis
thaliana GN=SRP-54C PE=2 SV=2
Length = 495
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 150/306 (49%), Gaps = 18/306 (5%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q ++ +D+ L L + L+ +V+ + +++ ++ + + LA+
Sbjct: 8 GRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ L ++L P + A ++ K VV+FVG+ G GK+T K
Sbjct: 68 GHNKRRIIEQAIFSELCKMLDPGKP-------AFAPKKAKASVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A DQ F Q +
Sbjct: 181 KENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSV 240
Query: 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKS 614
A + +++TK D K G ALS V + +PV+F+G G+ + + +VK
Sbjct: 241 A----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKP 289
Query: 615 IVKTLL 620
V LL
Sbjct: 290 FVSRLL 295
>sp|P49969|SR542_HORVU Signal recognition particle 54 kDa protein 2 OS=Hordeum vulgare
GN=SRP54-2 PE=2 SV=1
Length = 497
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 18/310 (5%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTPKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
+ + SD++++DT+GR + L + ++ PDLV+FV + +G A DQ F
Sbjct: 177 ERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAF 236
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
Q S+S + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 237 KQ-----SAS-----VGAVIITKLDG-HAKGGGALSAVAATKSPVIFIGTGEHIDEFEIF 285
Query: 611 NVKSIVKTLL 620
+VK V LL
Sbjct: 286 DVKPFVSRLL 295
>sp|P49968|SR541_HORVU Signal recognition particle 54 kDa protein 1 OS=Hordeum vulgare
GN=SRP54-1 PE=2 SV=1
Length = 497
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 151/310 (48%), Gaps = 18/310 (5%)
Query: 311 AKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGK 370
A+ G S ++ +D+ L L + L+ +V ++ + ++ + +
Sbjct: 4 AQLGGSISRALAQMSNATVIDEKVLGECLNEISRALLQSDVQFKMVRDMQTNIRKIVNLE 63
Query: 371 KLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKST 430
LA+ T I+Q A+ L +L P + ++ KP VV+FVG+ G GK+T
Sbjct: 64 TLAAGTNKRRIIQQAVFTELCNMLDPGKP-------AFTTKKGKPSVVMFVGLQGSGKTT 116
Query: 431 NLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490
K AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 117 TCTKYAYYHQRKGFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGL 176
Query: 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550
+ + SD++++DT+GR + L + ++ PDLV+FV + +G A DQ F
Sbjct: 177 ERFRKENSDLIIIDTSGRHKQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAF 236
Query: 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610
Q S+S + +++TK D K G ALS V + +PV+F+G G+ + +
Sbjct: 237 KQ-----SAS-----VGAVIITKLDG-HAKGGGALSAVAATKSPVIFIGTGEHIDEFEIF 285
Query: 611 NVKSIVKTLL 620
+VK V LL
Sbjct: 286 DVKPFVSRLL 295
>sp|Q9ZK62|SRP54_HELPJ Signal recognition particle protein OS=Helicobacter pylori (strain
J99) GN=ffh PE=3 SV=1
Length = 448
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 156/296 (52%), Gaps = 35/296 (11%)
Query: 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQA----AM 386
D+ L+ AL LK L+ +V ++A +L KK+ S T+ I + A+
Sbjct: 21 DEKALDRALDELKKTLLKNDVHHKVARELL---------KKVESQTKAGGIGKQQFLDAL 71
Query: 387 EEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E++L+ IL+ + S Q P VV+ G+ G GK+T AK+A++L V
Sbjct: 72 EKSLLEILSAKGSSGF------TFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKV 125
Query: 447 MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI--VAKEAIQEATRNGSDVVLVD 504
++ ACD R AVEQL+ ++ V +F +E++ ++ +A A++ A DV++VD
Sbjct: 126 LLCACDLQRLAAVEQLKVLGEQVGVEVF---HEENKSVKEIANNALKRAKEAQFDVLIVD 182
Query: 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564
+AGR+ ++ LM+ L ++ + NP VL+V +AL G D V + FN+++
Sbjct: 183 SAGRLAIDKELMQELKEVKEVLNPHEVLYVADALSGQDGVKSANTFNEEIG--------- 233
Query: 565 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ G++L+KFD+ D K G AL + Y G P+ F+G G+ DL + IV L+
Sbjct: 234 -VSGVVLSKFDS-DSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFMPERIVGRLM 287
>sp|P37106|SR541_ARATH Signal recognition particle 54 kDa protein 1 OS=Arabidopsis
thaliana GN=SRP-54A PE=2 SV=1
Length = 479
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 150/306 (49%), Gaps = 18/306 (5%)
Query: 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLAS 374
G + Q + +D+ L L + L+ +V+ + EK+ ++ + LA+
Sbjct: 8 GRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAA 67
Query: 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAK 434
I++ A+ + L R+L P + A ++ KP VV+FVG+ G GK+T K
Sbjct: 68 GHNKRLIIEQAIFKELCRMLDPGKP-------AFAPKKAKPSVVMFVGLQGAGKTTTCTK 120
Query: 435 VAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494
AY+ + + DTFR+GA +QL+ +A + ++P + E DP +A E +
Sbjct: 121 YAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFK 180
Query: 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554
+ D+++VDT+GR + L + ++ PDLV+FV ++ +G A +Q F + +
Sbjct: 181 KEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETV 240
Query: 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKS 614
+ + +++TK D K G ALS V + +PV+F+G G+ + + +VK
Sbjct: 241 S----------VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKP 289
Query: 615 IVKTLL 620
V LL
Sbjct: 290 FVSRLL 295
>sp|P49970|SR543_HORVU Signal recognition particle 54 kDa protein 3 OS=Hordeum vulgare
GN=SRP54-3 PE=2 SV=1
Length = 493
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 149/298 (50%), Gaps = 18/298 (6%)
Query: 323 SIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIV 382
+++ A +D++ L L + LM +V + L ++ ++ + LA+ T I+
Sbjct: 15 AMSSAAVVDESVLRECLNEIARALMQSDVRFKTVCDLQANIRKTVNLEALAAGTNKRRII 74
Query: 383 QAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442
+ ++ + L ++L D + K+ KP VV+FVG+ G GK+T K A++ +
Sbjct: 75 ETSVGKELCKML------DTGKPAFVPKKG-KPNVVMFVGLQGSGKTTTCTKYAHYHQRK 127
Query: 443 KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVL 502
+ DTFR+GA +QL+ +A + ++P + E DP +A E +++ + SD+++
Sbjct: 128 GFKPSLVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGLEKFRQEKSDLII 187
Query: 503 VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562
+DT+GR L + ++ PDLV+FV + +G A DQ F Q +
Sbjct: 188 IDTSGRHMQEAALFEEMRQVAEATKPDLVIFVMDGSIGQAAFDQAQAFKQSAS------- 240
Query: 563 PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ +++TK D K G ALS V + +PV+F+G G+ D NV+ V LL
Sbjct: 241 ---VGAVIVTKLDG-HAKGGGALSAVAATKSPVIFIGTGEHIDDFDVFNVEPFVARLL 294
>sp|P37105|SRP54_BACSU Signal recognition particle protein OS=Bacillus subtilis (strain
168) GN=ffh PE=1 SV=1
Length = 446
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 117/210 (55%), Gaps = 12/210 (5%)
Query: 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
+R P V++ VG+ G GK+T K+A L + H M+ A D +R A++QL T ++L
Sbjct: 98 KRPPTVIMMVGLQGAGKTTTSGKLANLLRKKHNRKPMLVAADIYRPAAIKQLETLGKQLD 157
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530
+P+F G + P +AK+AI++A D V++DTAGR+ + LM L+ + + NP+
Sbjct: 158 MPVFSLGDQVSPVEIAKQAIEKAKEEHYDYVILDTAGRLHIDHELMDELTNVKEIANPEE 217
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 590
+ V +++ G DAV+ FN++L + G++LTK D D + GAALS+ V
Sbjct: 218 IFLVVDSMTGQDAVNVAKSFNEQLG----------LTGVVLTKLDG-DTRGGAALSIRAV 266
Query: 591 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ P+ F G G+ L+ + + + +L
Sbjct: 267 TNTPIKFAGLGEKLDALEPFHPERMASRIL 296
>sp|Q8MZJ6|SRP54_GEOCY Signal recognition particle 54 kDa protein OS=Geodia cydonium
GN=SRP54 PE=2 SV=1
Length = 499
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 148/286 (51%), Gaps = 18/286 (6%)
Query: 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394
L+ LK + L+ +V ++ KL ++V A+++ + + + I+Q ++ L ++L
Sbjct: 27 LQAMLKEICTALLEADVNVKLVGKLRQNVRAAIDFEDMGAGLSKRRIIQTSVFNELCKLL 86
Query: 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454
P + H K V++FVG+ G GK+T K+AY + + DTF
Sbjct: 87 DPGVPV-----WHPTKGHSN--VIMFVGLQGSGKTTTCTKLAYHYQKKGWKTCLVCADTF 139
Query: 455 RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEP 514
R+GA +QL+ +A + +VP + E DP ++A+E +++ + +V++VDT+GR + E
Sbjct: 140 RAGAFDQLKQNATKARVPFYGSYTEMDPVVIAQEGVEKFKEDSFEVIIVDTSGRHKQEES 199
Query: 515 LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574
L + ++ +PD ++FV + +G Q F +K+ D++S +++TK
Sbjct: 200 LFEEMLQVSQAIDPDNIIFVMDGTIGQACESQARAFKEKV-DVAS---------VIVTKL 249
Query: 575 DTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
D K G ALS V + +P++F+G G+ +++ K V LL
Sbjct: 250 DG-HAKGGGALSAVAATRSPIIFIGTGEHIDEMEPFKTKPFVSKLL 294
>sp|O07347|SRP54_THEAQ Signal recognition particle protein OS=Thermus aquaticus GN=ffh
PE=1 SV=3
Length = 430
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 141/279 (50%), Gaps = 20/279 (7%)
Query: 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQ 383
+ G+ + + DL+ L+ ++ LM +V E+A E V GK++ + ++
Sbjct: 16 LRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVIL 75
Query: 384 AAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443
A + EAL L + +L+D + + VG+ G GK+T AK+A +
Sbjct: 76 ATVYEALKEALGGEARLPVLKDRN---------LWFLVGLQGSGKTTTAAKLALYYKGKG 126
Query: 444 VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLV 503
++ A DT R A EQLR ++ VP+ E + P + + ++A D++LV
Sbjct: 127 RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILV 186
Query: 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563
DTAGR+Q +EPLM L++L + PD VL V +A+ G +A+ F++K+
Sbjct: 187 DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG-------- 238
Query: 564 QLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602
+ G++LTK D D + GAALS +V+G P+ F G +
Sbjct: 239 --VTGLVLTKLDG-DARGGAALSARHVTGKPIYFAGVSE 274
>sp|Q8U070|SRP54_PYRFU Signal recognition particle 54 kDa protein OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=srp54
PE=1 SV=1
Length = 443
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 155/305 (50%), Gaps = 21/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
++ + IA +++D+A ++ ++ ++ L+ +V + +L + +LE K A
Sbjct: 10 LANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGI 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP +++ VG+ G GK+T +AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTILLMVGIQGSGKTTTVAKL 120
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
A + + V + DT+R GA QLR R + +F EKD +AKE +
Sbjct: 121 ARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
G D+++VDTAGR ++++ L+ + ++ + +P V+ V + +G A +NQ LA
Sbjct: 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA------YNQALA 234
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
++P I I++TK D K G ALS V +GAP+ F+G G+ D++ +
Sbjct: 235 FKEATP----IGSIIVTKLDG-SAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRF 289
Query: 616 VKTLL 620
V LL
Sbjct: 290 VSRLL 294
>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
(strain K12) GN=ftsY PE=1 SV=1
Length = 497
Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 17/216 (7%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
E + P+V++ VGVNGVGK+T + K+A Q SVM+AA DTFR+ AVEQL+ +R
Sbjct: 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 348
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY------ 524
+P+ + D A V +AIQ A DV++ DTAGR+Q+ LM L K++
Sbjct: 349 IPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLD 408
Query: 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584
+ P V+ +A G +AV Q F++ + + GI LTK D K G
Sbjct: 409 VEAPHEVMLTIDASTGQNAVSQAKLFHEAVG----------LTGITLTKLDGT-AKGGVI 457
Query: 585 LSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
S+ G P+ ++G G+ DL+ ++ L
Sbjct: 458 FSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALF 493
>sp|Q5R4R6|SRP54_PONAB Signal recognition particle 54 kDa protein OS=Pongo abelii GN=SRP54
PE=2 SV=1
Length = 504
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|Q4R965|SRP54_MACFA Signal recognition particle 54 kDa protein OS=Macaca fascicularis
GN=SRP54 PE=2 SV=1
Length = 504
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|P61011|SRP54_HUMAN Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54
PE=1 SV=1
Length = 504
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|P61010|SRP54_CANFA Signal recognition particle 54 kDa protein OS=Canis familiaris
GN=SRP54 PE=1 SV=1
Length = 504
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|Q2T9U1|SRP54_BOVIN Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54
PE=2 SV=1
Length = 504
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|P44870|FTSY_HAEIN Signal recognition particle receptor FtsY OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ftsY PE=3
SV=1
Length = 414
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 20/229 (8%)
Query: 401 DILRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG 457
DIL V E +KPYV++ VGVNGVGK+T + K+A SVM+AA DTFR+
Sbjct: 192 DILEPVAQPLEIDSTKKPYVILMVGVNGVGKTTTIGKLARKFQAEGKSVMLAAGDTFRAA 251
Query: 458 AVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMR 517
AVEQL+ R +P+ + D A V +A+Q A D+++ DTAGR+Q+ LM
Sbjct: 252 AVEQLQVWGERNHIPVVAQSTGSDSASVIFDAMQSAAARNIDILIADTAGRLQNKNNLMD 311
Query: 518 ALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571
L K++ + P ++ +A G +A+ Q FN+ + + GI L
Sbjct: 312 ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVG----------LTGISL 361
Query: 572 TKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
TK D K G ++ P+ ++G G+ DL++ N K ++ L
Sbjct: 362 TKLDGT-AKGGVIFAIADQFKLPIRYIGVGEKIEDLREFNAKEFIEALF 409
>sp|P14576|SRP54_MOUSE Signal recognition particle 54 kDa protein OS=Mus musculus GN=Srp54
PE=1 SV=2
Length = 504
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|Q726P7|FTSY_DESVH Signal recognition particle receptor FtsY OS=Desulfovibrio vulgaris
(strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ftsY
PE=3 SV=1
Length = 488
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474
P VV+ +GVNGVGK+T +AK+AY V++AA DTFR+ A+EQL A+R+ +
Sbjct: 280 PEVVLLIGVNGVGKTTTIAKLAYRAQLQGRKVLIAAGDTFRAAAIEQLEIWAKRVGAGFY 339
Query: 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI------YLNNP 528
K DPA VA EA+ +A G D++LVDTAGR+ LM L K+ + P
Sbjct: 340 AKTAGADPAAVAYEAMDKAVSEGYDLLLVDTAGRLHTKANLMEELHKIRKVLGRKHPGAP 399
Query: 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD-TIDDKVGAALSM 587
+ V +A G +A+ Q FN+ +D I+LTK D T + A++M
Sbjct: 400 HRSILVIDATTGQNALSQTKLFNEACG----------VDEIVLTKLDGTAKGGIVVAVAM 449
Query: 588 VYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ G P+ +VG G+ D++ N LL
Sbjct: 450 QF--GIPITYVGLGEKMEDMRPFNGSDFAMALL 480
>sp|Q6AYB5|SRP54_RAT Signal recognition particle 54 kDa protein OS=Rattus norvegicus
GN=Srp54 PE=2 SV=1
Length = 504
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 160/305 (52%), Gaps = 20/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
+S +S++ +++ L LK + L+ +V ++ ++L E+V ++++ +++AS
Sbjct: 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR-KPYVVVFVGVNGVGKSTNLAKV 435
++Q A+ + LV+++ P V A + K V++FVG+ G GK+T +K+
Sbjct: 70 NKRKMIQHAVFKELVKLVDP--------GVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKL 121
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
AY+ + + DTFR+GA +QL+ +A + ++P + E DP I+A E +++
Sbjct: 122 AYFYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKN 181
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
++++VDT+GR + + L + ++ PD +++V +A +G Q F K+
Sbjct: 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKV- 240
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
D++S +++TK D K G ALS V + +P++F+G G+ D + +
Sbjct: 241 DVAS---------VIVTKLDG-HAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPF 290
Query: 616 VKTLL 620
+ LL
Sbjct: 291 ISKLL 295
>sp|Q75K18|SRP54_DICDI Signal recognition particle 54 kDa protein OS=Dictyostelium
discoideum GN=srp54 PE=1 SV=1
Length = 542
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 158/304 (51%), Gaps = 18/304 (5%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFT 376
SS +S+ +++ + LK + + L +V+ + ++ +++ ++ ++A+
Sbjct: 10 LSSALRSLNETTIVNEDTINQLLKEVGNALSKSDVSMSLIIQMRKNIKDKIKLDQMAAGL 69
Query: 377 RISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA 436
I++ + + L+R+L P + + + K +V+FVG+ G GK+T++ K+A
Sbjct: 70 NKRKIIKQVVFDELIRLLDP--GVPLWKPTKG-----KSNIVMFVGLQGAGKTTSVTKLA 122
Query: 437 YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496
Y+ + S + DTFR+GA +Q+R +A + ++ + EKDP +VA+ + ++
Sbjct: 123 YFYKKKGFSTAIVCADTFRAGAFDQVRHNAAKAKIHYYGSETEKDPVVVARTGVDIFKKD 182
Query: 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556
G+++++VDT+GR + + L + ++ PD +FV ++ +G A +Q + F +
Sbjct: 183 GTEIIIVDTSGRHKQDSELFEEMKQIETAVKPDNCIFVMDSSIGQAAYEQATAFRSSVK- 241
Query: 557 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIV 616
+ I++TK D + G A+S V + P++F+G G+ TDL+ + + V
Sbjct: 242 ---------VGSIIITKMDG-NSMGGGAISAVAATNTPIIFIGTGEHLTDLELFDPSTFV 291
Query: 617 KTLL 620
LL
Sbjct: 292 SKLL 295
>sp|Q01442|SRP54_MYCMY Signal recognition particle protein OS=Mycoplasma mycoides GN=ffh
PE=1 SV=1
Length = 447
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 150/282 (53%), Gaps = 23/282 (8%)
Query: 328 ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAME 387
+ L++ +++ LK ++ L+ +V E A+++ +V G ++ + +
Sbjct: 22 STLNEENIKETLKEIRLSLLEADVNIEAAKEIINNVKQKALGGYISEGASAHQQMIKIVH 81
Query: 388 EALVRILTPRRS-IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446
E LV IL + +DI +KP VV+ VG+ G GK+T K+AY L +
Sbjct: 82 EELVNILGKENAPLDI---------NKKPSVVMMVGLQGSGKTTTANKLAYLLNKKNKKK 132
Query: 447 MMA-ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDT 505
++ D +R GA+EQL ++ +FEKG ++DP A++A++ A N DVV++DT
Sbjct: 133 VLLVGLDIYRPGAIEQLVQLGQKTNTQVFEKG-KQDPVKTAEQALEYAKENNFDVVILDT 191
Query: 506 AGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565
AGR+Q ++ LM+ L L +P+ +L V + + G + ++ ++FN KL
Sbjct: 192 AGRLQVDQVLMKELDNLKKKTSPNEILLVVDGMSGQEIINVTNEFNDKLK---------- 241
Query: 566 IDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL 607
+ G+++TK D D + GA LS+ Y++ P+ F+G G+ Y L
Sbjct: 242 LSGVVVTKLDG-DARGGATLSISYLTKLPIKFIGEGEGYNAL 282
>sp|Q5JJC8|SRP54_PYRKO Signal recognition particle 54 kDa protein OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=srp54 PE=3 SV=1
Length = 448
Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 156/305 (51%), Gaps = 21/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
+S + +A + +D+A ++ ++ ++ L+ +V ++ +L + + +LE + A
Sbjct: 10 LNSALKKLARSSTVDEATIKEIVRDIQRALLQADVNVKLVLQLTKQIQKRALEEEPPAGV 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + ++I + KP V++ VG+ G GK+T++AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPLEI---------KHKPTVILTVGIQGSGKTTSVAKL 120
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
A +L + V + DT+R GA QLR + +F EKD +A+E ++
Sbjct: 121 ARYLQKRGYKVGVVCSDTWRPGAYYQLRQLLDPFGIEVFGDPEEKDAVKLAREGVEHFRE 180
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
G DV++VD+AGR ++ + L+ + ++ P V+ V + +G A +NQ +A
Sbjct: 181 KGVDVIIVDSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQA------YNQAMA 234
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
++P I I++TK D K G ALS V +GAP+ F+G G+ DL+ + K
Sbjct: 235 FKEATP----IGSIIVTKLDG-SAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRF 289
Query: 616 VKTLL 620
V LL
Sbjct: 290 VSRLL 294
>sp|P20424|SRP54_YEAST Signal recognition particle subunit SRP54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SRP54 PE=1
SV=2
Length = 541
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 11/210 (5%)
Query: 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ 470
++RK +++FVG+ G GK+T+ K+A + + V + DTFR+GA +QL+ +A R +
Sbjct: 105 KKRKTNIIMFVGLQGSGKTTSCTKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRAR 164
Query: 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530
+P + E DPA VA+E I + + D+++VDT+GR E L + + ++ + P+
Sbjct: 165 IPFYGSYTETDPAKVAEEGINKFKKEKFDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQ 224
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 590
+ V +A +G A +Q SK ++ +D + I+LTK D + G A+S V
Sbjct: 225 TIMVLDASIG-QAAEQQSKAFKESSDFGA---------IILTKMDG-HARGGGAISAVAA 273
Query: 591 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
+ P++F+G G+ DL+K + KS + LL
Sbjct: 274 TNTPIIFIGTGEHIHDLEKFSPKSFISKLL 303
>sp|O67066|FTSY_AQUAE Signal recognition particle receptor FtsY OS=Aquifex aeolicus
(strain VF5) GN=ftsY PE=3 SV=1
Length = 461
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 17/210 (8%)
Query: 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476
V++FVGVNG GK+T + K+A+ L Q V++ A DTFR+ A+EQL A+R V I +K
Sbjct: 262 VLLFVGVNGSGKTTTIGKLAHQLKQKGKKVLLVAGDTFRAAAIEQLEVWAKRAGVDIVKK 321
Query: 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDL 530
DP V E +++A G +VVLVDTAGR+ EPL+ L K+ + P
Sbjct: 322 EEGSDPGAVVYEGMKKAKEEGYEVVLVDTAGRLHTKEPLINELRKIKKVIQKFDKEEPSE 381
Query: 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 590
L V +A G +A+ Q F + + I GI++TK D K GA +++
Sbjct: 382 TLLVIDATTGQNAIQQAKVFKEAVD----------ITGIVVTKLDG-SAKGGAVVAICRE 430
Query: 591 SGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620
P+ VG G+ DL+ + + V+ LL
Sbjct: 431 LKIPIKLVGVGEGIDDLQPFDADAYVEALL 460
>sp|P44518|SRP54_HAEIN Signal recognition particle protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ffh PE=3
SV=1
Length = 462
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 154/309 (49%), Gaps = 27/309 (8%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVA----EEIAEKLCESVAASLEGKKL 372
S ++I GK L + +++ L+ ++ L+ +VA E K+ ES K L
Sbjct: 9 LSKTLRNITGKGRLTEDNIKETLREVRMALLEADVALPVVREFIAKVKESALGEEVNKSL 68
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432
IVQ +E+A+ S+++ + P V++ G+ G GK+T++
Sbjct: 69 TPGQEFLKIVQRELEKAMGE---ANESLNL--------ATQPPAVILMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+A +L + HK V++ + D +R A++QL T A+ + V F +++P +AK A+
Sbjct: 118 GKLAKFLRERHKKKVLVVSADVYRPAAIKQLETLAQSVGVDFFPSDVKQNPVDIAKSALA 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
+A DV++VDTAGR+ + +M + ++ NP LF +A+ G DA + FN
Sbjct: 178 DAKLKFYDVLIVDTAGRLHVDTEMMDEIKQVHAALNPIETLFTVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ ++G P+ F+G G+ L+ +
Sbjct: 238 EALP----------LTGVILTKVDG-DARGGAALSIRQITGKPIKFLGVGEKTEALEPFH 286
Query: 612 VKSIVKTLL 620
+ +L
Sbjct: 287 PDRVASRIL 295
>sp|P0AGD7|SRP54_ECOLI Signal recognition particle protein OS=Escherichia coli (strain
K12) GN=ffh PE=1 SV=1
Length = 453
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL- 372
T S ++I+G+ L + +++ L+ ++ L+ +VA + + V G ++
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432
S T V+ E + + +++++ + P VV+ G+ G GK+T++
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNL--------AAQPPAVVLMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+ +L + HK V++ + D +R A++QL T A ++ V F + P + A++
Sbjct: 118 GKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
EA DV+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN
Sbjct: 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ +++G P+ F+G G+ L+ +
Sbjct: 238 EALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
Query: 612 VKSIVKTLL 620
I +L
Sbjct: 287 PDRIASRIL 295
>sp|P0AGD8|SRP54_ECOL6 Signal recognition particle protein OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ffh PE=3 SV=1
Length = 453
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL- 372
T S ++I+G+ L + +++ L+ ++ L+ +VA + + V G ++
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432
S T V+ E + + +++++ + P VV+ G+ G GK+T++
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNL--------AAQPPAVVLMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+ +L + HK V++ + D +R A++QL T A ++ V F + P + A++
Sbjct: 118 GKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
EA DV+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN
Sbjct: 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ +++G P+ F+G G+ L+ +
Sbjct: 238 EALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
Query: 612 VKSIVKTLL 620
I +L
Sbjct: 287 PDRIASRIL 295
>sp|P0AGD9|SRP54_ECO57 Signal recognition particle protein OS=Escherichia coli O157:H7
GN=ffh PE=3 SV=1
Length = 453
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKL- 372
T S ++I+G+ L + +++ L+ ++ L+ +VA + + V G ++
Sbjct: 6 TDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN 65
Query: 373 ASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432
S T V+ E + + +++++ + P VV+ G+ G GK+T++
Sbjct: 66 KSLTPGQEFVKIVRNELVAAMGEENQTLNL--------AAQPPAVVLMAGLQGAGKTTSV 117
Query: 433 AKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491
K+ +L + HK V++ + D +R A++QL T A ++ V F + P + A++
Sbjct: 118 GKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177
Query: 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551
EA DV+LVDTAGR+ +E +M + ++ NP LFV +A+ G DA + FN
Sbjct: 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFN 237
Query: 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLN 611
+ L + G++LTK D D + GAALS+ +++G P+ F+G G+ L+ +
Sbjct: 238 EALP----------LTGVVLTKVDG-DARGGAALSIRHITGKPIKFLGVGEKTEALEPFH 286
Query: 612 VKSIVKTLL 620
I +L
Sbjct: 287 PDRIASRIL 295
>sp|B6YSS1|SRP54_THEON Signal recognition particle 54 kDa protein OS=Thermococcus
onnurineus (strain NA1) GN=srp54 PE=3 SV=1
Length = 448
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 153/305 (50%), Gaps = 21/305 (6%)
Query: 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAA-SLEGKKLASF 375
++ + +A + +D+A ++ ++ ++ L+ +V + L + + +LE +
Sbjct: 10 LNNALRKLARSSTVDEATIKEVVRDIQRALIQADVNVRLVLDLTKRIEKRALEEEPPTGV 69
Query: 376 TRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKV 435
++ I++ EE + T + I+I + KP V++ VG+ G GK+T++AK+
Sbjct: 70 SKKEHIIKIVYEELTKFLGTEAKPIEI---------KEKPTVLLTVGIQGSGKTTSIAKL 120
Query: 436 AYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495
A + + V + DT+R GA +QL+ + +F EKD +AKE ++
Sbjct: 121 ARYFQKRGYKVGLVCSDTWRPGAYQQLKQLVEPFGIEVFGDPEEKDAIKLAKEGVEHFRE 180
Query: 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555
G D+++VD+AGR ++ + L+ + ++ P V+ V + +G A +NQ LA
Sbjct: 181 KGVDIIIVDSAGRHKEEKSLIEEMKQISAAIKPHEVILVIDGTIGQQA------YNQALA 234
Query: 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSI 615
++P I I++TK D K G ALS V +GAP+ F+G G+ DL+ + K
Sbjct: 235 FKEATP----IGSIIVTKLDG-SAKGGGALSAVAATGAPIKFIGVGERIDDLEPFDPKRF 289
Query: 616 VKTLL 620
V LL
Sbjct: 290 VSRLL 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,690,059
Number of Sequences: 539616
Number of extensions: 9934202
Number of successful extensions: 37528
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 36406
Number of HSP's gapped (non-prelim): 998
length of query: 621
length of database: 191,569,459
effective HSP length: 124
effective length of query: 497
effective length of database: 124,657,075
effective search space: 61954566275
effective search space used: 61954566275
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)