Query 007024
Match_columns 621
No_of_seqs 500 out of 3631
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 17:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0781 Signal recognition par 100.0 3E-108 7E-113 866.0 36.1 568 1-621 1-587 (587)
2 COG0552 FtsY Signal recognitio 100.0 7.7E-49 1.7E-53 405.8 24.7 275 329-621 59-340 (340)
3 COG0541 Ffh Signal recognition 100.0 2.7E-45 5.7E-50 389.3 28.1 288 315-620 7-294 (451)
4 PRK14974 cell division protein 100.0 1.4E-43 3.1E-48 374.9 28.2 291 312-621 45-335 (336)
5 TIGR01425 SRP54_euk signal rec 100.0 2.6E-43 5.6E-48 381.7 28.3 288 315-620 7-294 (429)
6 KOG0780 Signal recognition par 100.0 2.9E-42 6.2E-47 358.3 24.9 289 314-620 7-295 (483)
7 PRK10867 signal recognition pa 100.0 3.8E-40 8.2E-45 358.9 27.1 287 316-620 8-295 (433)
8 PRK00771 signal recognition pa 100.0 3.4E-39 7.3E-44 352.1 27.8 284 316-620 4-287 (437)
9 PRK10416 signal recognition pa 100.0 1.1E-38 2.5E-43 336.3 28.0 277 319-621 33-315 (318)
10 TIGR00959 ffh signal recogniti 100.0 1E-38 2.2E-43 347.5 27.7 288 315-620 6-294 (428)
11 TIGR00064 ftsY signal recognit 100.0 3.4E-37 7.3E-42 318.9 25.9 264 335-620 3-272 (272)
12 PF04086 SRP-alpha_N: Signal r 100.0 6E-39 1.3E-43 333.1 5.4 114 27-147 1-124 (279)
13 PF00448 SRP54: SRP54-type pro 100.0 6.3E-37 1.4E-41 302.6 16.0 195 415-620 1-195 (196)
14 PRK11889 flhF flagellar biosyn 100.0 6E-34 1.3E-38 302.9 24.8 254 337-621 178-434 (436)
15 PRK14723 flhF flagellar biosyn 100.0 6.6E-34 1.4E-38 324.7 24.6 254 336-621 124-380 (767)
16 PRK06995 flhF flagellar biosyn 100.0 8.2E-33 1.8E-37 304.0 24.1 270 314-621 176-448 (484)
17 PRK12726 flagellar biosynthesi 100.0 1.2E-32 2.6E-37 292.3 24.0 252 341-621 146-399 (407)
18 PRK12723 flagellar biosynthesi 100.0 9.6E-33 2.1E-37 297.4 22.0 255 336-620 108-368 (388)
19 PRK12724 flagellar biosynthesi 100.0 9.5E-33 2.1E-37 297.2 20.6 266 327-620 145-415 (432)
20 COG1419 FlhF Flagellar GTP-bin 100.0 1E-32 2.2E-37 293.3 19.6 190 412-620 202-394 (407)
21 PRK14722 flhF flagellar biosyn 100.0 1.4E-31 3.1E-36 286.4 24.4 264 329-620 66-337 (374)
22 PRK14721 flhF flagellar biosyn 100.0 4E-31 8.7E-36 286.7 22.9 254 332-621 127-383 (420)
23 PRK05703 flhF flagellar biosyn 100.0 6.9E-31 1.5E-35 287.1 23.7 256 331-621 155-414 (424)
24 PRK06731 flhF flagellar biosyn 100.0 3E-31 6.5E-36 273.5 19.2 258 332-621 8-268 (270)
25 PRK12727 flagellar biosynthesi 100.0 5.8E-28 1.3E-32 265.7 24.0 251 332-620 287-540 (559)
26 COG1126 GlnQ ABC-type polar am 99.9 1.9E-26 4.2E-31 226.3 13.6 184 398-604 13-215 (240)
27 COG1116 TauB ABC-type nitrate/ 99.9 1.6E-24 3.4E-29 217.8 15.7 181 400-602 16-208 (248)
28 COG1120 FepC ABC-type cobalami 99.9 2E-24 4.4E-29 220.1 15.9 184 399-605 14-219 (258)
29 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.6E-24 3.5E-29 219.9 13.5 160 401-573 18-197 (254)
30 COG1136 SalX ABC-type antimicr 99.9 2.8E-24 6.2E-29 215.1 15.0 180 400-602 18-219 (226)
31 COG1127 Ttg2A ABC-type transpo 99.9 1.6E-24 3.5E-29 215.7 12.9 187 396-604 17-225 (263)
32 COG1131 CcmA ABC-type multidru 99.9 8.3E-25 1.8E-29 229.0 8.7 154 399-561 17-186 (293)
33 COG4555 NatA ABC-type Na+ tran 99.9 4.5E-24 9.7E-29 207.2 8.6 172 400-580 15-202 (245)
34 COG3842 PotA ABC-type spermidi 99.9 6.4E-24 1.4E-28 225.1 10.3 198 399-619 17-236 (352)
35 COG3839 MalK ABC-type sugar tr 99.9 1.8E-23 3.8E-28 220.7 11.7 180 402-603 18-212 (338)
36 COG2884 FtsE Predicted ATPase 99.9 7.7E-23 1.7E-27 197.1 15.1 184 400-606 15-218 (223)
37 COG1135 AbcC ABC-type metal io 99.9 1.9E-23 4.1E-28 214.5 10.6 185 399-605 18-222 (339)
38 COG4152 ABC-type uncharacteriz 99.9 2.1E-23 4.7E-28 207.6 9.9 193 398-599 13-229 (300)
39 COG1125 OpuBA ABC-type proline 99.9 6.6E-23 1.4E-27 205.3 12.4 198 399-620 13-236 (309)
40 PRK13537 nodulation ABC transp 99.9 4.3E-23 9.3E-28 217.3 8.6 161 400-573 20-196 (306)
41 COG1118 CysA ABC-type sulfate/ 99.9 2.5E-22 5.5E-27 205.9 13.6 182 399-602 14-215 (345)
42 COG1124 DppF ABC-type dipeptid 99.9 4.6E-22 9.9E-27 198.8 14.3 183 401-606 21-223 (252)
43 PRK13536 nodulation factor exp 99.9 7.9E-23 1.7E-27 218.2 8.9 161 400-573 54-230 (340)
44 COG1117 PstB ABC-type phosphat 99.9 6.1E-22 1.3E-26 194.1 12.7 161 399-573 19-206 (253)
45 cd03226 ABC_cobalt_CbiO_domain 99.9 1.8E-21 4E-26 192.7 15.3 180 400-603 13-204 (205)
46 TIGR01188 drrA daunorubicin re 99.9 2.2E-21 4.7E-26 203.9 15.8 161 400-573 6-182 (302)
47 COG1122 CbiO ABC-type cobalt t 99.9 1.5E-21 3.3E-26 197.9 13.7 184 400-605 17-219 (235)
48 COG1137 YhbG ABC-type (unclass 99.9 2.4E-22 5.3E-27 195.0 7.5 183 399-604 16-218 (243)
49 TIGR00960 3a0501s02 Type II (G 99.9 2.3E-21 4.9E-26 193.4 14.6 160 401-573 17-196 (216)
50 TIGR01166 cbiO cobalt transpor 99.9 1.4E-21 3.1E-26 191.2 12.8 159 400-573 5-185 (190)
51 TIGR02314 ABC_MetN D-methionin 99.9 1.7E-21 3.6E-26 208.1 14.3 183 400-604 18-220 (343)
52 COG0410 LivF ABC-type branched 99.9 2.3E-21 5E-26 192.5 14.2 185 398-604 14-216 (237)
53 cd03259 ABC_Carb_Solutes_like 99.9 4.1E-21 8.9E-26 191.1 15.6 162 400-573 13-189 (213)
54 COG3638 ABC-type phosphate/pho 99.9 1.5E-21 3.3E-26 194.0 11.7 187 398-606 15-229 (258)
55 cd03265 ABC_DrrA DrrA is the A 99.9 5.5E-21 1.2E-25 191.3 15.4 183 400-604 13-211 (220)
56 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 2.7E-21 5.9E-26 192.9 13.1 162 400-573 17-199 (218)
57 PRK11629 lolD lipoprotein tran 99.9 2.7E-21 5.9E-26 195.3 13.2 184 400-606 22-226 (233)
58 cd03261 ABC_Org_Solvent_Resist 99.9 3.4E-21 7.4E-26 194.7 13.9 183 400-604 13-216 (235)
59 PRK11650 ugpC glycerol-3-phosp 99.9 4.9E-21 1.1E-25 205.7 15.7 162 400-573 17-193 (356)
60 cd03225 ABC_cobalt_CbiO_domain 99.9 5.2E-21 1.1E-25 189.9 14.5 161 400-573 14-192 (211)
61 cd03293 ABC_NrtD_SsuB_transpor 99.9 7.7E-21 1.7E-25 190.2 15.7 184 400-605 17-214 (220)
62 cd03301 ABC_MalK_N The N-termi 99.9 7.5E-21 1.6E-25 189.1 15.5 182 401-604 14-210 (213)
63 TIGR01288 nodI ATP-binding ABC 99.9 7.6E-21 1.7E-25 199.8 16.0 161 400-573 17-193 (303)
64 PRK11432 fbpC ferric transport 99.9 6.4E-21 1.4E-25 204.4 15.6 183 400-604 19-216 (351)
65 COG0411 LivG ABC-type branched 99.9 1.2E-21 2.7E-26 195.8 9.4 186 398-605 15-230 (250)
66 cd03235 ABC_Metallic_Cations A 99.9 4.3E-21 9.3E-26 191.0 12.8 161 400-573 12-190 (213)
67 TIGR02673 FtsE cell division A 99.8 1.2E-20 2.7E-25 187.7 15.9 161 400-573 15-195 (214)
68 TIGR02211 LolD_lipo_ex lipopro 99.8 4.3E-21 9.3E-26 191.9 12.6 162 400-573 18-200 (221)
69 PRK13647 cbiO cobalt transport 99.8 6.8E-21 1.5E-25 197.5 14.5 182 400-604 18-217 (274)
70 TIGR03410 urea_trans_UrtE urea 99.8 9.6E-21 2.1E-25 190.7 15.0 195 400-616 13-225 (230)
71 TIGR03265 PhnT2 putative 2-ami 99.8 8.5E-21 1.8E-25 203.6 15.4 183 400-604 17-214 (353)
72 cd03268 ABC_BcrA_bacitracin_re 99.8 7.1E-21 1.5E-25 188.7 13.5 181 400-604 13-205 (208)
73 PRK10851 sulfate/thiosulfate t 99.8 7.5E-21 1.6E-25 204.0 14.7 183 400-604 15-216 (353)
74 cd03269 ABC_putative_ATPase Th 99.8 1.6E-20 3.6E-25 186.4 16.0 182 400-604 13-207 (210)
75 TIGR03522 GldA_ABC_ATP gliding 99.8 7.6E-21 1.6E-25 199.8 14.3 160 400-573 15-190 (301)
76 COG4175 ProV ABC-type proline/ 99.8 2.2E-21 4.9E-26 199.3 9.9 193 397-604 38-252 (386)
77 PRK09452 potA putrescine/sperm 99.8 7E-21 1.5E-25 205.7 14.3 160 400-573 27-203 (375)
78 TIGR03608 L_ocin_972_ABC putat 99.8 1.2E-20 2.6E-25 186.5 14.8 161 400-573 11-192 (206)
79 PRK13637 cbiO cobalt transport 99.8 9.2E-21 2E-25 197.8 14.6 180 401-604 21-224 (287)
80 TIGR01186 proV glycine betaine 99.8 1.1E-20 2.5E-25 203.1 15.6 183 400-604 6-209 (363)
81 cd03256 ABC_PhnC_transporter A 99.8 1.3E-20 2.8E-25 190.7 15.1 183 400-604 14-224 (241)
82 cd03296 ABC_CysA_sulfate_impor 99.8 9.9E-21 2.2E-25 191.9 14.3 183 400-604 15-216 (239)
83 cd03266 ABC_NatA_sodium_export 99.8 1.5E-20 3.3E-25 187.6 15.3 180 401-603 19-214 (218)
84 cd03224 ABC_TM1139_LivF_branch 99.8 1.2E-20 2.5E-25 188.7 14.2 183 400-605 13-212 (222)
85 TIGR02315 ABC_phnC phosphonate 99.8 1.4E-20 3E-25 190.9 14.9 183 400-604 15-225 (243)
86 cd03292 ABC_FtsE_transporter F 99.8 2.2E-20 4.8E-25 185.7 16.0 161 400-573 14-194 (214)
87 cd03219 ABC_Mj1267_LivG_branch 99.8 1.5E-20 3.3E-25 189.8 14.9 182 400-604 13-222 (236)
88 PRK10070 glycine betaine trans 99.8 1.2E-20 2.6E-25 205.2 14.9 184 399-604 40-244 (400)
89 PRK13634 cbiO cobalt transport 99.8 1.1E-20 2.4E-25 197.5 14.1 181 400-604 20-225 (290)
90 cd03115 SRP The signal recogni 99.8 2.5E-20 5.5E-25 179.6 15.4 173 416-599 1-173 (173)
91 cd03218 ABC_YhbG The ABC trans 99.8 2.4E-20 5.2E-25 187.9 15.8 182 400-604 13-212 (232)
92 PRK11153 metN DL-methionine tr 99.8 1.7E-20 3.6E-25 200.7 15.5 183 400-604 18-220 (343)
93 PRK13646 cbiO cobalt transport 99.8 1.3E-20 2.7E-25 196.6 14.2 162 400-573 20-204 (286)
94 cd03263 ABC_subfamily_A The AB 99.8 2.3E-20 5E-25 186.5 15.5 181 400-604 15-211 (220)
95 cd03262 ABC_HisP_GlnQ_permease 99.8 1.6E-20 3.4E-25 186.6 14.2 161 400-573 13-193 (213)
96 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.6E-20 3.4E-25 190.1 14.3 182 400-604 14-211 (236)
97 COG4181 Predicted ABC-type tra 99.8 1.7E-20 3.7E-25 178.2 13.4 187 397-606 20-227 (228)
98 PRK11247 ssuB aliphatic sulfon 99.8 1.5E-20 3.3E-25 193.3 14.2 159 400-573 25-192 (257)
99 PRK10908 cell division protein 99.8 3.1E-20 6.8E-25 186.1 16.0 181 400-603 15-215 (222)
100 cd03294 ABC_Pro_Gly_Bertaine T 99.8 3.7E-20 8.1E-25 191.4 16.9 184 399-604 36-240 (269)
101 cd03267 ABC_NatA_like Similar 99.8 3.9E-20 8.4E-25 187.6 16.6 185 398-604 32-233 (236)
102 PRK10584 putative ABC transpor 99.8 2.2E-20 4.7E-25 187.8 14.6 181 401-604 24-225 (228)
103 PRK13538 cytochrome c biogenes 99.8 6E-21 1.3E-25 189.1 10.3 159 400-573 14-187 (204)
104 TIGR03258 PhnT 2-aminoethylpho 99.8 1.2E-20 2.6E-25 203.0 13.4 183 400-604 18-218 (362)
105 TIGR01189 ccmA heme ABC export 99.8 1.3E-20 2.9E-25 185.7 12.6 160 400-573 13-185 (198)
106 PRK13641 cbiO cobalt transport 99.8 1.9E-20 4E-25 195.5 14.2 180 400-604 20-224 (287)
107 PRK11000 maltose/maltodextrin 99.8 2.5E-20 5.4E-25 201.2 15.6 183 400-604 16-213 (369)
108 PRK09536 btuD corrinoid ABC tr 99.8 1.7E-20 3.7E-25 204.1 14.3 182 400-604 16-218 (402)
109 TIGR01184 ntrCD nitrate transp 99.8 2E-20 4.4E-25 188.9 13.9 180 403-604 1-194 (230)
110 cd03257 ABC_NikE_OppD_transpor 99.8 2.5E-20 5.4E-25 186.9 14.3 182 401-604 19-225 (228)
111 PRK13638 cbiO cobalt transport 99.8 1.9E-20 4.2E-25 193.6 13.8 180 400-604 14-215 (271)
112 cd03231 ABC_CcmA_heme_exporter 99.8 2.1E-20 4.7E-25 184.9 13.5 158 400-573 13-183 (201)
113 PRK13643 cbiO cobalt transport 99.8 2.2E-20 4.9E-25 195.0 14.2 179 401-604 20-223 (288)
114 cd03298 ABC_ThiQ_thiamine_tran 99.8 3.1E-20 6.7E-25 184.6 14.5 178 405-604 16-208 (211)
115 cd03260 ABC_PstB_phosphate_tra 99.8 4.2E-20 9.2E-25 185.6 15.5 180 401-604 14-219 (227)
116 PRK11248 tauB taurine transpor 99.8 2.9E-20 6.3E-25 190.8 14.5 160 400-573 14-187 (255)
117 PRK13650 cbiO cobalt transport 99.8 1.8E-20 4E-25 194.8 13.1 159 401-573 21-199 (279)
118 PRK13635 cbiO cobalt transport 99.8 1.8E-20 3.9E-25 194.9 13.0 160 400-573 20-199 (279)
119 PRK13651 cobalt transporter AT 99.8 2.3E-20 5E-25 196.6 13.7 179 401-604 21-244 (305)
120 cd03258 ABC_MetN_methionine_tr 99.8 4.7E-20 1E-24 186.0 15.4 183 401-605 19-221 (233)
121 TIGR03415 ABC_choXWV_ATP choli 99.8 4.2E-20 9.1E-25 199.7 16.0 185 398-604 35-244 (382)
122 PRK11607 potG putrescine trans 99.8 3.9E-20 8.4E-25 200.1 15.7 162 400-573 32-208 (377)
123 PRK11831 putative ABC transpor 99.8 2.8E-20 6E-25 192.3 13.8 161 400-573 20-202 (269)
124 PRK11308 dppF dipeptide transp 99.8 2.3E-20 5E-25 198.4 13.6 183 400-604 28-234 (327)
125 PRK13652 cbiO cobalt transport 99.8 3.3E-20 7E-25 192.6 14.3 159 401-573 18-196 (277)
126 PRK13636 cbiO cobalt transport 99.8 3.8E-20 8.2E-25 192.8 14.4 162 400-573 19-200 (283)
127 PRK15079 oligopeptide ABC tran 99.8 5.6E-20 1.2E-24 195.7 15.9 183 400-604 34-241 (331)
128 PRK11022 dppD dipeptide transp 99.8 2.9E-20 6.4E-25 197.5 13.5 182 400-604 20-233 (326)
129 COG4598 HisP ABC-type histidin 99.8 4.6E-20 1E-24 176.5 13.4 183 398-603 17-230 (256)
130 PRK10575 iron-hydroxamate tran 99.8 4.6E-20 1E-24 190.2 14.5 183 400-604 24-227 (265)
131 PRK13649 cbiO cobalt transport 99.8 4.5E-20 9.8E-25 191.6 14.1 158 401-573 21-203 (280)
132 PRK13543 cytochrome c biogenes 99.8 4.4E-20 9.6E-25 184.4 13.5 160 401-573 25-195 (214)
133 PRK11264 putative amino-acid A 99.8 5.6E-20 1.2E-24 187.4 14.5 180 401-604 17-223 (250)
134 TIGR03740 galliderm_ABC gallid 99.8 5.1E-20 1.1E-24 184.7 13.9 181 400-604 13-203 (223)
135 PRK10895 lipopolysaccharide AB 99.8 5.6E-20 1.2E-24 186.5 14.1 182 400-604 16-216 (241)
136 cd03295 ABC_OpuCA_Osmoprotecti 99.8 3.1E-20 6.7E-25 188.6 12.2 183 400-604 14-215 (242)
137 PRK09493 glnQ glutamine ABC tr 99.8 5.5E-20 1.2E-24 186.5 13.9 181 400-604 14-215 (240)
138 PRK11231 fecE iron-dicitrate t 99.8 4.8E-20 1E-24 188.8 13.5 182 400-604 15-217 (255)
139 PRK15056 manganese/iron transp 99.8 4.7E-20 1E-24 190.9 13.5 161 400-573 20-200 (272)
140 PRK13539 cytochrome c biogenes 99.8 4.6E-20 9.9E-25 183.3 12.7 159 401-573 16-185 (207)
141 PRK15112 antimicrobial peptide 99.8 5.2E-20 1.1E-24 190.0 13.5 183 400-604 26-229 (267)
142 PRK13639 cbiO cobalt transport 99.8 6.6E-20 1.4E-24 190.1 14.0 181 401-604 16-216 (275)
143 TIGR02770 nickel_nikD nickel i 99.8 1.2E-19 2.5E-24 183.2 15.4 181 402-604 1-205 (230)
144 TIGR00972 3a0107s01c2 phosphat 99.8 6.8E-20 1.5E-24 186.7 13.8 180 401-604 15-222 (247)
145 TIGR02769 nickel_nikE nickel i 99.8 8.8E-20 1.9E-24 188.0 14.7 183 400-604 24-230 (265)
146 cd03264 ABC_drug_resistance_li 99.8 7.1E-20 1.5E-24 182.0 13.5 178 401-603 14-207 (211)
147 PRK13633 cobalt transporter AT 99.8 5.7E-20 1.2E-24 191.1 13.3 160 400-573 23-203 (280)
148 TIGR03411 urea_trans_UrtD urea 99.8 8.3E-20 1.8E-24 185.2 14.1 181 400-604 15-221 (242)
149 PRK11300 livG leucine/isoleuci 99.8 6.9E-20 1.5E-24 187.2 13.7 183 400-604 18-233 (255)
150 PRK13645 cbiO cobalt transport 99.8 7.3E-20 1.6E-24 191.1 14.1 159 401-573 25-209 (289)
151 cd03214 ABC_Iron-Siderophores_ 99.8 5.1E-20 1.1E-24 179.1 12.1 154 401-603 13-176 (180)
152 PRK13548 hmuV hemin importer A 99.8 1E-19 2.2E-24 187.0 14.9 183 400-604 15-220 (258)
153 PRK10253 iron-enterobactin tra 99.8 8.5E-20 1.8E-24 188.2 14.3 183 400-604 20-223 (265)
154 PRK13631 cbiO cobalt transport 99.8 8.1E-20 1.8E-24 193.6 14.3 179 401-604 40-255 (320)
155 PRK13644 cbiO cobalt transport 99.8 1.2E-19 2.6E-24 188.2 15.2 160 401-573 16-194 (274)
156 PRK14250 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 183.8 15.6 180 400-604 16-211 (241)
157 PRK10247 putative ABC transpor 99.8 9.3E-20 2E-24 183.4 14.0 160 400-573 20-196 (225)
158 PRK15093 antimicrobial peptide 99.8 7.9E-20 1.7E-24 194.5 14.2 183 400-604 20-238 (330)
159 PRK11124 artP arginine transpo 99.8 5.7E-20 1.2E-24 186.5 12.3 161 400-573 15-199 (242)
160 PRK09544 znuC high-affinity zi 99.8 6.4E-20 1.4E-24 188.0 12.7 160 400-573 17-179 (251)
161 PRK13540 cytochrome c biogenes 99.8 8.8E-20 1.9E-24 180.2 13.2 157 400-573 14-185 (200)
162 TIGR01277 thiQ thiamine ABC tr 99.8 9.3E-20 2E-24 181.7 13.4 181 402-604 13-208 (213)
163 COG3840 ThiQ ABC-type thiamine 99.8 1.6E-19 3.5E-24 173.2 14.3 176 406-604 18-209 (231)
164 TIGR02324 CP_lyasePhnL phospho 99.8 1E-19 2.3E-24 182.4 13.7 161 400-573 21-207 (224)
165 COG4604 CeuD ABC-type enteroch 99.8 2.5E-20 5.3E-25 180.7 8.6 185 398-604 12-215 (252)
166 TIGR03005 ectoine_ehuA ectoine 99.8 6.7E-20 1.5E-24 187.2 12.3 183 400-604 13-226 (252)
167 PRK14247 phosphate ABC transpo 99.8 3E-19 6.6E-24 182.1 17.0 181 400-604 16-224 (250)
168 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 1.2E-19 2.5E-24 182.8 13.6 181 399-604 34-221 (224)
169 cd03297 ABC_ModC_molybdenum_tr 99.8 9.6E-20 2.1E-24 181.6 12.9 176 405-603 16-210 (214)
170 PRK10619 histidine/lysine/argi 99.8 1E-19 2.2E-24 186.6 13.5 182 400-604 18-231 (257)
171 PRK13632 cbiO cobalt transport 99.8 8.3E-20 1.8E-24 188.9 12.9 160 400-573 22-201 (271)
172 COG4586 ABC-type uncharacteriz 99.8 6.2E-20 1.3E-24 185.6 11.5 201 384-606 20-238 (325)
173 PRK11144 modC molybdate transp 99.8 1.1E-19 2.4E-24 195.0 14.2 157 405-573 16-187 (352)
174 PRK09473 oppD oligopeptide tra 99.8 1.1E-19 2.4E-24 193.5 14.0 182 400-604 29-241 (330)
175 PRK14259 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 186.8 14.8 160 400-573 26-211 (269)
176 PRK10771 thiQ thiamine transpo 99.8 1.8E-19 3.9E-24 181.9 14.7 178 405-604 17-209 (232)
177 PRK11701 phnK phosphonate C-P 99.8 1.2E-19 2.7E-24 186.1 13.6 182 401-604 20-231 (258)
178 TIGR02142 modC_ABC molybdenum 99.8 1.4E-19 3.1E-24 194.3 14.6 157 405-573 15-190 (354)
179 COG4559 ABC-type hemin transpo 99.8 2.9E-19 6.2E-24 175.2 15.1 189 400-605 14-221 (259)
180 PRK11288 araG L-arabinose tran 99.8 2E-19 4.2E-24 201.5 16.0 194 401-617 267-490 (501)
181 PRK15439 autoinducer 2 ABC tra 99.8 1.8E-19 3.9E-24 202.2 15.8 181 400-604 24-219 (510)
182 COG4525 TauB ABC-type taurine 99.8 1.1E-19 2.4E-24 176.0 11.9 162 400-573 18-191 (259)
183 cd03233 ABC_PDR_domain1 The pl 99.8 3.1E-19 6.7E-24 176.9 15.6 170 399-604 19-199 (202)
184 PRK11614 livF leucine/isoleuci 99.8 1.8E-19 3.9E-24 182.4 14.2 181 400-604 18-216 (237)
185 PRK13642 cbiO cobalt transport 99.8 1.1E-19 2.5E-24 188.6 13.1 160 400-573 20-199 (277)
186 PRK10762 D-ribose transporter 99.8 2.1E-19 4.6E-24 201.2 16.2 182 400-604 17-220 (501)
187 PRK10418 nikD nickel transport 99.8 2.1E-19 4.5E-24 184.1 14.7 182 401-604 17-220 (254)
188 PRK14242 phosphate transporter 99.8 3E-19 6.5E-24 182.5 15.6 180 401-604 20-227 (253)
189 cd03216 ABC_Carb_Monos_I This 99.8 2.5E-19 5.4E-24 171.9 14.1 147 401-603 14-160 (163)
190 PRK13549 xylose transporter AT 99.8 3.5E-19 7.6E-24 199.6 17.5 182 400-604 18-222 (506)
191 PRK09700 D-allose transporter 99.8 2.5E-19 5.4E-24 201.0 16.3 182 400-604 18-224 (510)
192 PRK14267 phosphate ABC transpo 99.8 3.7E-19 8.1E-24 181.8 16.0 181 400-604 17-227 (253)
193 PRK13549 xylose transporter AT 99.8 2.6E-19 5.6E-24 200.7 16.2 195 400-617 275-499 (506)
194 PRK03695 vitamin B12-transport 99.8 2.6E-19 5.6E-24 182.9 14.8 179 402-604 11-212 (248)
195 TIGR03873 F420-0_ABC_ATP propo 99.8 2E-19 4.4E-24 184.3 14.0 182 400-604 14-216 (256)
196 cd03245 ABCC_bacteriocin_expor 99.8 1.2E-19 2.5E-24 181.5 11.9 175 400-604 17-217 (220)
197 PRK13640 cbiO cobalt transport 99.8 1.5E-19 3.2E-24 188.3 13.1 159 401-573 21-202 (282)
198 cd03300 ABC_PotA_N PotA is an 99.8 1.6E-19 3.5E-24 182.3 13.0 162 400-573 13-189 (232)
199 PRK13648 cbiO cobalt transport 99.8 1.7E-19 3.8E-24 186.3 13.5 181 401-604 23-221 (269)
200 PRK09700 D-allose transporter 99.8 2.8E-19 6.1E-24 200.5 16.2 193 401-616 277-503 (510)
201 COG1129 MglA ABC-type sugar tr 99.8 2.6E-19 5.7E-24 196.6 15.3 203 393-619 14-242 (500)
202 TIGR02982 heterocyst_DevA ABC 99.8 1.8E-19 3.9E-24 180.5 12.7 162 400-573 18-200 (220)
203 PRK14235 phosphate transporter 99.8 6.2E-19 1.3E-23 182.1 16.8 181 400-604 32-241 (267)
204 cd03215 ABC_Carb_Monos_II This 99.8 2.6E-19 5.6E-24 174.5 13.2 138 402-573 15-162 (182)
205 cd03246 ABCC_Protease_Secretio 99.8 2.8E-19 6.1E-24 172.8 13.2 131 400-573 15-154 (173)
206 TIGR02323 CP_lyasePhnK phospho 99.8 2.8E-19 6.1E-24 182.7 13.9 182 401-604 17-228 (253)
207 cd03252 ABCC_Hemolysin The ABC 99.8 1.9E-19 4.2E-24 182.0 12.6 176 400-605 15-216 (237)
208 TIGR01978 sufC FeS assembly AT 99.8 1.9E-19 4.1E-24 182.4 12.6 161 400-573 13-202 (243)
209 PRK10744 pstB phosphate transp 99.8 6.3E-19 1.4E-23 181.1 16.6 179 400-604 26-234 (260)
210 cd03230 ABC_DR_subfamily_A Thi 99.8 3.5E-19 7.6E-24 172.2 13.8 132 401-573 14-153 (173)
211 PRK09984 phosphonate/organopho 99.8 2.5E-19 5.4E-24 184.2 13.5 162 400-573 17-211 (262)
212 PRK10762 D-ribose transporter 99.8 3.6E-19 7.8E-24 199.3 15.9 193 401-616 266-488 (501)
213 cd03254 ABCC_Glucan_exporter_l 99.8 1.9E-19 4E-24 181.0 12.2 176 401-604 17-216 (229)
214 TIGR02633 xylG D-xylose ABC tr 99.8 3.7E-19 8E-24 199.1 15.9 196 400-618 273-498 (500)
215 PRK10261 glutathione transport 99.8 1.8E-19 3.9E-24 206.8 13.7 183 400-604 29-248 (623)
216 cd03250 ABCC_MRP_domain1 Domai 99.8 6.2E-19 1.3E-23 174.5 15.5 151 401-573 19-186 (204)
217 PRK10982 galactose/methyl gala 99.8 4.5E-19 9.8E-24 198.0 16.4 182 400-604 11-213 (491)
218 cd03234 ABCG_White The White s 99.8 3.5E-19 7.6E-24 179.1 13.9 162 400-574 20-202 (226)
219 cd03299 ABC_ModC_like Archeal 99.8 3.8E-19 8.2E-24 180.1 14.2 181 402-604 14-209 (235)
220 PRK14241 phosphate transporter 99.8 2.3E-19 4.9E-24 184.1 12.7 160 400-573 17-205 (258)
221 PRK10261 glutathione transport 99.8 1.9E-19 4.1E-24 206.6 13.4 183 400-604 337-543 (623)
222 PRK14243 phosphate transporter 99.8 4.4E-19 9.5E-24 182.9 14.7 160 400-573 23-208 (264)
223 COG4161 ArtP ABC-type arginine 99.8 7.4E-19 1.6E-23 165.6 14.7 197 400-619 15-240 (242)
224 COG0444 DppD ABC-type dipeptid 99.8 3.1E-19 6.7E-24 185.3 13.4 185 398-604 16-233 (316)
225 PRK14256 phosphate ABC transpo 99.8 5.2E-19 1.1E-23 180.7 14.9 181 400-604 17-226 (252)
226 PRK14273 phosphate ABC transpo 99.8 4.2E-19 9.2E-24 181.6 14.2 181 400-604 20-228 (254)
227 cd03229 ABC_Class3 This class 99.8 5.1E-19 1.1E-23 171.8 13.9 136 400-573 13-159 (178)
228 PRK14254 phosphate ABC transpo 99.8 3E-19 6.4E-24 186.4 13.1 160 400-573 52-237 (285)
229 TIGR03269 met_CoM_red_A2 methy 99.8 3.5E-19 7.6E-24 200.2 14.5 194 400-619 297-519 (520)
230 PRK13547 hmuV hemin importer A 99.8 6.1E-19 1.3E-23 182.9 14.9 188 400-604 14-234 (272)
231 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 4E-19 8.6E-24 179.8 13.1 175 400-604 16-216 (238)
232 PRK14268 phosphate ABC transpo 99.8 8.5E-19 1.8E-23 180.0 15.7 179 400-604 25-232 (258)
233 TIGR02633 xylG D-xylose ABC tr 99.8 7.7E-19 1.7E-23 196.5 16.7 182 400-604 14-220 (500)
234 cd03244 ABCC_MRP_domain2 Domai 99.8 3.8E-19 8.2E-24 177.9 12.7 175 401-604 18-216 (221)
235 PRK14245 phosphate ABC transpo 99.8 8.6E-19 1.9E-23 178.9 15.6 181 400-604 16-224 (250)
236 PRK15134 microcin C ABC transp 99.8 4E-19 8.7E-24 200.2 14.4 183 400-604 22-236 (529)
237 PRK14248 phosphate ABC transpo 99.8 5.3E-19 1.1E-23 182.5 14.1 181 400-604 34-242 (268)
238 TIGR00968 3a0106s01 sulfate AB 99.8 1.1E-18 2.3E-23 177.1 16.0 183 400-604 13-210 (237)
239 PRK14269 phosphate ABC transpo 99.8 1.5E-18 3.2E-23 176.9 16.9 181 400-604 15-220 (246)
240 PRK11288 araG L-arabinose tran 99.8 6.7E-19 1.4E-23 197.2 15.5 182 400-604 17-219 (501)
241 cd03251 ABCC_MsbA MsbA is an e 99.8 4.2E-19 9.1E-24 179.1 12.5 175 401-605 16-216 (234)
242 COG4619 ABC-type uncharacteriz 99.8 3.3E-19 7.2E-24 169.0 10.9 164 398-574 14-193 (223)
243 cd03228 ABCC_MRP_Like The MRP 99.8 7.5E-19 1.6E-23 169.5 13.7 129 401-573 16-153 (171)
244 PRK10982 galactose/methyl gala 99.8 7.9E-19 1.7E-23 196.1 15.7 192 401-615 262-483 (491)
245 cd03369 ABCC_NFT1 Domain 2 of 99.8 7.9E-19 1.7E-23 174.1 13.9 149 401-573 22-182 (207)
246 PRK14272 phosphate ABC transpo 99.8 8E-19 1.7E-23 179.1 14.3 181 400-604 17-226 (252)
247 PRK14265 phosphate ABC transpo 99.8 6.5E-19 1.4E-23 182.7 13.7 160 400-573 33-218 (274)
248 PRK15439 autoinducer 2 ABC tra 99.8 8.4E-19 1.8E-23 196.8 15.7 181 402-605 278-483 (510)
249 PRK14249 phosphate ABC transpo 99.8 1.3E-18 2.9E-23 177.6 15.8 181 400-604 17-225 (251)
250 PRK13541 cytochrome c biogenes 99.8 5.3E-19 1.1E-23 174.0 12.3 156 402-573 16-181 (195)
251 PRK15134 microcin C ABC transp 99.8 5E-19 1.1E-23 199.4 13.8 182 400-604 299-505 (529)
252 cd03223 ABCD_peroxisomal_ALDP 99.8 8.5E-19 1.8E-23 168.7 13.2 132 401-573 15-146 (166)
253 cd03248 ABCC_TAP TAP, the Tran 99.8 7.1E-19 1.5E-23 176.6 13.2 158 400-573 27-207 (226)
254 PRK14251 phosphate ABC transpo 99.8 1.2E-18 2.6E-23 177.8 15.1 181 400-604 17-225 (251)
255 cd03290 ABCC_SUR1_N The SUR do 99.8 8.8E-19 1.9E-23 175.1 13.7 156 400-573 14-200 (218)
256 TIGR03771 anch_rpt_ABC anchore 99.8 8.9E-19 1.9E-23 176.1 13.6 152 409-573 2-171 (223)
257 PRK09580 sufC cysteine desulfu 99.8 6E-19 1.3E-23 179.5 12.5 160 401-573 15-203 (248)
258 PRK10938 putative molybdenum t 99.8 8.5E-19 1.8E-23 195.7 14.8 161 400-573 16-193 (490)
259 PRK14270 phosphate ABC transpo 99.8 2E-18 4.3E-23 176.3 16.3 179 400-604 17-225 (251)
260 PRK14275 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 182.1 14.6 181 400-604 52-260 (286)
261 PRK14240 phosphate transporter 99.8 1.1E-18 2.4E-23 177.9 14.3 180 401-604 17-224 (250)
262 cd03253 ABCC_ATM1_transporter 99.8 4.3E-19 9.2E-24 179.2 11.1 176 401-604 15-214 (236)
263 cd03247 ABCC_cytochrome_bd The 99.8 9.1E-19 2E-23 169.9 12.7 132 401-573 16-155 (178)
264 COG3845 ABC-type uncharacteriz 99.8 2.1E-18 4.5E-23 186.5 16.7 197 399-619 16-237 (501)
265 cd03237 ABC_RNaseL_inhibitor_d 99.8 7.4E-19 1.6E-23 179.7 12.5 156 402-573 9-174 (246)
266 PRK10419 nikE nickel transport 99.8 7.8E-19 1.7E-23 181.5 12.7 182 400-604 25-231 (268)
267 PRK14263 phosphate ABC transpo 99.8 1.1E-18 2.4E-23 179.8 13.8 160 400-573 21-206 (261)
268 PRK14244 phosphate ABC transpo 99.8 2.8E-18 6.1E-23 175.2 16.7 181 400-604 18-227 (251)
269 PRK14238 phosphate transporter 99.8 1.7E-18 3.7E-23 179.2 15.1 181 400-604 37-245 (271)
270 COG1123 ATPase components of v 99.8 8.8E-19 1.9E-23 193.6 13.7 185 399-605 21-235 (539)
271 PRK14274 phosphate ABC transpo 99.8 2.9E-18 6.2E-23 176.1 16.6 179 400-604 25-233 (259)
272 PRK14262 phosphate ABC transpo 99.8 1.3E-18 2.9E-23 177.4 13.9 181 400-604 16-224 (250)
273 cd03213 ABCG_EPDR ABCG transpo 99.8 1.7E-18 3.7E-23 170.6 14.1 140 400-573 22-169 (194)
274 TIGR03269 met_CoM_red_A2 methy 99.8 1.2E-18 2.5E-23 196.0 14.7 183 400-604 13-248 (520)
275 PRK14237 phosphate transporter 99.8 2.4E-18 5.3E-23 177.6 15.7 181 400-604 33-241 (267)
276 TIGR02868 CydC thiol reductant 99.8 9.2E-19 2E-23 197.1 13.4 154 401-573 349-527 (529)
277 PRK14253 phosphate ABC transpo 99.8 2.2E-18 4.8E-23 175.7 14.8 181 400-604 16-223 (249)
278 PRK14236 phosphate transporter 99.8 2E-18 4.2E-23 178.8 14.5 181 400-604 38-246 (272)
279 cd03232 ABC_PDR_domain2 The pl 99.8 2E-18 4.4E-23 169.7 13.4 140 400-573 20-166 (192)
280 PRK14260 phosphate ABC transpo 99.8 1.6E-18 3.6E-23 177.9 13.2 160 400-573 20-207 (259)
281 PRK14255 phosphate ABC transpo 99.8 3.1E-18 6.7E-23 174.9 15.0 181 400-604 18-226 (252)
282 CHL00131 ycf16 sulfate ABC tra 99.8 1.4E-18 3E-23 177.3 12.5 160 401-573 21-209 (252)
283 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 2E-18 4.4E-23 162.4 12.3 112 401-573 14-125 (144)
284 cd03217 ABC_FeS_Assembly ABC-t 99.8 1.8E-18 3.8E-23 171.2 12.3 160 400-605 13-185 (200)
285 cd03222 ABC_RNaseL_inhibitor T 99.8 2.4E-18 5.1E-23 167.7 12.9 118 400-573 13-130 (177)
286 PRK13546 teichoic acids export 99.8 5.1E-18 1.1E-22 175.3 16.1 178 398-604 35-222 (264)
287 PRK14239 phosphate transporter 99.8 3E-18 6.5E-23 174.9 14.2 181 400-604 18-226 (252)
288 PRK15177 Vi polysaccharide exp 99.8 2.6E-18 5.7E-23 171.8 13.3 176 402-604 2-182 (213)
289 PRK14258 phosphate ABC transpo 99.8 3.6E-18 7.9E-23 175.7 14.4 178 401-600 21-226 (261)
290 COG1123 ATPase components of v 99.8 2.6E-18 5.6E-23 190.0 13.9 185 399-605 303-510 (539)
291 PRK14257 phosphate ABC transpo 99.8 4.3E-18 9.3E-23 181.2 14.9 179 400-604 95-303 (329)
292 PRK13545 tagH teichoic acids e 99.8 2.4E-18 5.2E-23 190.8 13.3 178 401-604 38-222 (549)
293 PRK14271 phosphate ABC transpo 99.8 4E-18 8.7E-23 177.1 14.1 180 400-604 34-241 (276)
294 PRK14246 phosphate ABC transpo 99.8 3.9E-18 8.5E-23 175.3 13.7 182 399-604 22-231 (257)
295 cd03288 ABCC_SUR2 The SUR doma 99.8 4.5E-18 9.8E-23 174.6 14.1 177 400-605 34-234 (257)
296 PRK14261 phosphate ABC transpo 99.8 5.5E-18 1.2E-22 173.3 14.5 181 400-604 19-227 (253)
297 PRK11174 cysteine/glutathione 99.8 3.1E-18 6.7E-23 195.2 13.9 174 400-604 363-562 (588)
298 cd03238 ABC_UvrA The excision 99.8 7.4E-18 1.6E-22 164.1 14.5 154 398-604 6-167 (176)
299 PRK14266 phosphate ABC transpo 99.8 6.4E-18 1.4E-22 172.3 14.7 181 400-604 16-224 (250)
300 COG2274 SunT ABC-type bacterio 99.8 3.2E-18 6.9E-23 197.2 13.8 178 400-605 486-687 (709)
301 PRK14264 phosphate ABC transpo 99.8 4.1E-18 8.8E-23 179.5 13.4 159 401-573 59-257 (305)
302 PRK10938 putative molybdenum t 99.8 2.3E-18 4.9E-23 192.3 12.1 183 400-604 273-482 (490)
303 TIGR01257 rim_protein retinal- 99.8 5.1E-19 1.1E-23 220.5 7.3 161 400-573 1952-2128(2272)
304 KOG0058 Peptide exporter, ABC 99.8 3.8E-18 8.2E-23 191.6 13.3 177 399-604 480-681 (716)
305 PRK14252 phosphate ABC transpo 99.8 5.8E-18 1.3E-22 174.5 13.6 180 401-604 30-239 (265)
306 cd03289 ABCC_CFTR2 The CFTR su 99.8 4.9E-18 1.1E-22 176.5 12.7 173 400-604 17-215 (275)
307 PRK11819 putative ABC transpor 99.8 5E-18 1.1E-22 192.6 13.9 176 400-603 20-238 (556)
308 cd03291 ABCC_CFTR1 The CFTR su 99.8 8.1E-18 1.8E-22 175.4 14.0 171 400-604 50-237 (282)
309 KOG0055 Multidrug/pheromone ex 99.7 4.8E-18 1E-22 200.1 13.0 178 396-605 361-567 (1228)
310 PRK15064 ABC transporter ATP-b 99.7 7.9E-18 1.7E-22 189.8 14.0 175 400-604 332-514 (530)
311 PF00005 ABC_tran: ABC transpo 99.7 3.7E-18 8E-23 157.6 9.3 123 403-539 1-137 (137)
312 PRK15064 ABC transporter ATP-b 99.7 1E-17 2.2E-22 188.9 14.7 176 400-603 14-230 (530)
313 PRK10636 putative ABC transpor 99.7 9.5E-18 2.1E-22 193.1 14.3 156 400-573 14-204 (638)
314 TIGR02857 CydD thiol reductant 99.7 7.9E-18 1.7E-22 189.5 13.3 155 400-573 335-515 (529)
315 PRK13409 putative ATPase RIL; 99.7 6.2E-18 1.3E-22 192.7 12.5 154 402-573 354-512 (590)
316 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 8.7E-18 1.9E-22 195.6 14.0 174 400-605 492-691 (710)
317 TIGR01257 rim_protein retinal- 99.7 1.2E-17 2.5E-22 208.5 15.9 160 400-573 943-1118(2272)
318 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 9.8E-18 2.1E-22 194.5 13.9 174 399-605 465-664 (686)
319 COG4148 ModC ABC-type molybdat 99.7 8.6E-18 1.9E-22 170.5 11.5 176 405-603 16-207 (352)
320 PRK10636 putative ABC transpor 99.7 1E-17 2.3E-22 192.7 13.8 176 400-603 325-505 (638)
321 PRK11176 lipid transporter ATP 99.7 1.1E-17 2.5E-22 190.2 13.8 176 400-604 356-557 (582)
322 COG4608 AppF ABC-type oligopep 99.7 1.4E-17 3E-22 169.8 12.6 142 399-573 25-168 (268)
323 PRK11819 putative ABC transpor 99.7 1.5E-17 3.3E-22 188.6 14.4 172 400-600 337-517 (556)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.7E-17 3.6E-22 188.1 14.6 176 400-603 18-236 (552)
325 TIGR03375 type_I_sec_LssB type 99.7 1.5E-17 3.2E-22 193.3 14.5 188 400-620 478-691 (694)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.5E-17 3.3E-22 188.5 14.1 155 400-573 335-498 (552)
327 PRK11160 cysteine/glutathione 99.7 1.3E-17 2.8E-22 189.8 13.6 175 400-604 353-552 (574)
328 cd03236 ABC_RNaseL_inhibitor_d 99.7 1.5E-17 3.2E-22 171.1 12.6 157 401-573 15-197 (255)
329 PRK11147 ABC transporter ATPas 99.7 2.3E-17 5E-22 189.9 15.4 154 400-573 332-495 (635)
330 PLN03211 ABC transporter G-25; 99.7 1.4E-17 3.1E-22 191.9 12.7 161 400-573 81-264 (659)
331 COG4133 CcmA ABC-type transpor 99.7 1.7E-17 3.8E-22 160.1 10.9 151 399-560 14-179 (209)
332 PRK10790 putative multidrug tr 99.7 2.5E-17 5.5E-22 187.9 14.3 174 400-604 354-553 (592)
333 PRK13657 cyclic beta-1,2-gluca 99.7 2.4E-17 5.1E-22 188.1 13.7 175 400-604 348-548 (588)
334 TIGR02203 MsbA_lipidA lipid A 99.7 3E-17 6.6E-22 186.1 14.4 156 400-573 345-526 (571)
335 TIGR01193 bacteriocin_ABC ABC- 99.7 2.8E-17 6E-22 191.4 13.6 175 400-604 487-687 (708)
336 cd00267 ABC_ATPase ABC (ATP-bi 99.7 4.7E-17 1E-21 154.5 12.8 126 401-573 13-138 (157)
337 TIGR00958 3a01208 Conjugate Tr 99.7 2.3E-17 5E-22 192.2 12.9 173 400-604 494-692 (711)
338 PRK11147 ABC transporter ATPas 99.7 4.4E-17 9.4E-22 187.6 15.0 176 400-604 16-232 (635)
339 COG1119 ModF ABC-type molybden 99.7 4.6E-17 9.9E-22 163.3 13.0 168 398-576 42-234 (257)
340 TIGR01187 potA spermidine/putr 99.7 4.6E-17 1E-21 173.0 13.9 144 420-573 1-159 (325)
341 TIGR01842 type_I_sec_PrtD type 99.7 4.4E-17 9.6E-22 184.2 14.3 177 400-605 331-533 (544)
342 PRK10522 multidrug transporter 99.7 6.1E-17 1.3E-21 183.3 15.1 178 401-605 337-529 (547)
343 TIGR01194 cyc_pep_trnsptr cycl 99.7 5.6E-17 1.2E-21 183.9 14.6 180 401-607 356-552 (555)
344 COG1134 TagH ABC-type polysacc 99.7 7.3E-17 1.6E-21 161.9 13.7 196 386-604 23-226 (249)
345 PRK10789 putative multidrug tr 99.7 3.3E-17 7.1E-22 186.3 12.7 155 400-573 328-508 (569)
346 TIGR01846 type_I_sec_HlyB type 99.7 4.8E-17 1E-21 189.0 14.1 176 400-605 470-671 (694)
347 COG4988 CydD ABC-type transpor 99.7 4.4E-17 9.5E-22 179.8 12.7 177 401-605 335-534 (559)
348 COG4107 PhnK ABC-type phosphon 99.7 1.1E-16 2.3E-21 152.8 13.6 206 389-620 11-256 (258)
349 TIGR02204 MsbA_rel ABC transpo 99.7 6.9E-17 1.5E-21 183.5 13.6 176 400-605 353-554 (576)
350 PLN03073 ABC transporter F fam 99.7 8.9E-17 1.9E-21 186.7 14.5 175 401-604 523-703 (718)
351 COG1132 MdlB ABC-type multidru 99.7 7.9E-17 1.7E-21 183.0 13.6 176 399-604 341-542 (567)
352 PRK13409 putative ATPase RIL; 99.7 2.1E-17 4.5E-22 188.4 8.7 171 386-573 75-269 (590)
353 TIGR01192 chvA glucan exporter 99.7 8.7E-17 1.9E-21 183.5 13.8 174 401-604 349-548 (585)
354 KOG0057 Mitochondrial Fe/S clu 99.7 1.3E-16 2.7E-21 174.3 13.8 161 400-577 365-549 (591)
355 PRK10535 macrolide transporter 99.7 1.6E-16 3.5E-21 183.3 14.9 161 400-573 21-202 (648)
356 TIGR00955 3a01204 The Eye Pigm 99.7 1.3E-16 2.7E-21 183.2 12.4 162 399-573 37-224 (617)
357 PTZ00265 multidrug resistance 99.7 1.8E-16 3.9E-21 196.2 14.6 156 401-573 1182-1417(1466)
358 COG4167 SapF ABC-type antimicr 99.7 8.4E-16 1.8E-20 147.7 15.1 183 399-604 25-229 (267)
359 TIGR00954 3a01203 Peroxysomal 99.7 2.8E-16 6.1E-21 181.5 13.3 155 401-573 466-637 (659)
360 PTZ00265 multidrug resistance 99.7 3E-16 6.4E-21 194.3 13.9 162 400-573 398-638 (1466)
361 KOG0055 Multidrug/pheromone ex 99.7 3.4E-16 7.5E-21 184.7 13.5 179 399-605 1002-1204(1228)
362 COG1101 PhnK ABC-type uncharac 99.7 9.6E-17 2.1E-21 157.8 7.2 187 400-608 19-232 (263)
363 COG4987 CydC ABC-type transpor 99.7 4E-16 8.7E-21 170.3 12.1 181 395-605 346-552 (573)
364 COG0488 Uup ATPase components 99.7 4.2E-16 9.1E-21 174.6 12.6 157 399-573 15-208 (530)
365 TIGR03499 FlhF flagellar biosy 99.7 6.1E-16 1.3E-20 161.4 13.0 150 334-507 131-282 (282)
366 KOG0061 Transporter, ABC super 99.7 3.1E-16 6.7E-21 179.4 11.4 156 399-563 42-222 (613)
367 TIGR00956 3a01205 Pleiotropic 99.7 2.8E-16 6.1E-21 194.1 11.7 161 400-573 776-960 (1394)
368 COG4172 ABC-type uncharacteriz 99.7 1.5E-15 3.3E-20 160.6 15.2 183 400-605 300-507 (534)
369 COG4618 ArpD ABC-type protease 99.7 5.8E-16 1.3E-20 167.8 12.3 162 394-572 343-529 (580)
370 TIGR00957 MRP_assoc_pro multi 99.6 7.4E-16 1.6E-20 192.1 14.7 174 401-605 1300-1499(1522)
371 COG4172 ABC-type uncharacteriz 99.6 1.2E-15 2.6E-20 161.4 14.0 188 396-605 19-238 (534)
372 PLN03232 ABC transporter C fam 99.6 7E-16 1.5E-20 192.1 14.2 174 401-605 1250-1449(1495)
373 PLN03130 ABC transporter C fam 99.6 7.7E-16 1.7E-20 192.3 14.2 174 401-605 1253-1452(1622)
374 COG4136 ABC-type uncharacteriz 99.6 9.7E-16 2.1E-20 143.2 11.2 161 401-573 16-193 (213)
375 TIGR00956 3a01205 Pleiotropic 99.6 1.4E-15 3E-20 188.0 15.4 162 399-572 73-267 (1394)
376 PLN03140 ABC transporter G fam 99.6 6.7E-16 1.5E-20 190.7 11.4 161 400-573 893-1077(1470)
377 COG0396 sufC Cysteine desulfur 99.6 1.8E-15 3.9E-20 150.4 12.2 184 400-605 17-225 (251)
378 KOG0059 Lipid exporter ABCA1 a 99.6 2.9E-16 6.2E-21 186.6 6.8 173 402-583 580-770 (885)
379 PLN03140 ABC transporter G fam 99.6 7.5E-16 1.6E-20 190.3 10.4 164 398-573 176-395 (1470)
380 PTZ00243 ABC transporter; Prov 99.6 2.1E-15 4.6E-20 188.0 14.5 173 401-604 1324-1523(1560)
381 PLN03073 ABC transporter F fam 99.6 3E-15 6.6E-20 173.9 13.3 177 400-603 190-419 (718)
382 KOG0056 Heavy metal exporter H 99.6 2.7E-15 5.7E-20 161.3 11.6 153 399-560 550-723 (790)
383 cd03278 ABC_SMC_barmotin Barmo 99.6 3.8E-15 8.3E-20 147.5 11.4 146 404-573 14-174 (197)
384 TIGR01271 CFTR_protein cystic 99.6 6.6E-15 1.4E-19 183.3 15.8 173 400-604 1232-1430(1490)
385 TIGR01271 CFTR_protein cystic 99.6 4.2E-15 9.1E-20 185.0 13.9 153 401-573 440-606 (1490)
386 COG4674 Uncharacterized ABC-ty 99.6 1.9E-15 4E-20 146.8 8.4 184 398-605 16-226 (249)
387 cd03270 ABC_UvrA_I The excisio 99.6 5.7E-15 1.2E-19 149.2 11.8 164 396-573 4-197 (226)
388 COG0488 Uup ATPase components 99.6 6.7E-15 1.4E-19 165.0 13.1 156 400-573 335-494 (530)
389 COG4778 PhnL ABC-type phosphon 99.6 1.5E-15 3.3E-20 144.5 6.3 154 397-559 21-200 (235)
390 PLN03130 ABC transporter C fam 99.6 1.6E-14 3.6E-19 180.5 15.3 150 401-573 631-798 (1622)
391 PTZ00243 ABC transporter; Prov 99.6 1.4E-14 3E-19 180.8 14.0 153 400-573 673-840 (1560)
392 TIGR00957 MRP_assoc_pro multi 99.6 1.7E-14 3.6E-19 180.1 14.3 152 401-573 652-820 (1522)
393 PLN03232 ABC transporter C fam 99.5 3.3E-14 7.1E-19 177.3 14.1 151 401-573 631-798 (1495)
394 KOG0065 Pleiotropic drug resis 99.5 1.1E-14 2.3E-19 172.3 4.7 188 399-603 803-1019(1391)
395 COG5265 ATM1 ABC-type transpor 99.5 1.3E-13 2.8E-18 146.9 10.5 151 398-559 274-447 (497)
396 cd03273 ABC_SMC2_euk Eukaryoti 99.4 3.4E-13 7.3E-18 138.1 10.9 154 416-577 26-231 (251)
397 cd03272 ABC_SMC3_euk Eukaryoti 99.4 3.3E-12 7.1E-17 129.7 13.6 87 500-605 154-240 (243)
398 KOG0054 Multidrug resistance-a 99.4 1.7E-12 3.8E-17 156.7 13.1 150 401-573 535-701 (1381)
399 cd03279 ABC_sbcCD SbcCD and ot 99.4 4.7E-12 1E-16 126.6 14.2 156 405-573 19-191 (213)
400 KOG0066 eIF2-interacting prote 99.4 1.8E-12 3.8E-17 138.2 10.8 159 417-605 615-780 (807)
401 cd03271 ABC_UvrA_II The excisi 99.4 6E-12 1.3E-16 130.0 13.6 64 499-573 164-230 (261)
402 cd03274 ABC_SMC4_euk Eukaryoti 99.4 5.8E-13 1.3E-17 133.5 5.6 65 499-575 122-190 (212)
403 COG1129 MglA ABC-type sugar tr 99.4 6.9E-12 1.5E-16 138.5 14.2 266 329-619 175-497 (500)
404 COG4138 BtuD ABC-type cobalami 99.4 6.5E-13 1.4E-17 127.3 5.2 163 405-577 17-193 (248)
405 cd03276 ABC_SMC6_euk Eukaryoti 99.3 3.2E-12 7E-17 126.7 9.1 139 404-558 13-160 (198)
406 cd03240 ABC_Rad50 The catalyti 99.3 4.2E-12 9.1E-17 126.5 9.7 138 417-573 24-181 (204)
407 COG4615 PvdE ABC-type sideroph 99.3 5.7E-12 1.2E-16 133.4 10.0 172 402-594 338-525 (546)
408 KOG0927 Predicted transporter 99.3 4.4E-12 9.4E-17 138.8 8.2 142 403-555 406-553 (614)
409 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.7E-11 5.9E-16 123.9 13.2 65 502-573 153-217 (247)
410 KOG0927 Predicted transporter 99.3 1E-11 2.2E-16 135.9 9.9 188 398-603 86-306 (614)
411 KOG2355 Predicted ABC-type tra 99.3 1.8E-11 3.9E-16 120.1 9.3 180 401-605 28-228 (291)
412 KOG0054 Multidrug resistance-a 99.3 3.8E-11 8.2E-16 145.3 14.1 176 401-605 1154-1353(1381)
413 COG4178 ABC-type uncharacteriz 99.2 2.5E-11 5.3E-16 136.6 11.4 146 395-555 402-559 (604)
414 PRK09435 membrane ATPase/prote 99.2 6.7E-11 1.4E-15 126.0 13.3 174 412-607 53-251 (332)
415 TIGR00750 lao LAO/AO transport 99.2 2.2E-10 4.7E-15 120.8 15.4 184 400-607 21-229 (300)
416 KOG0062 ATPase component of AB 99.2 3.8E-11 8.2E-16 130.9 8.5 150 400-573 93-253 (582)
417 COG1245 Predicted ATPase, RNas 99.2 1.2E-10 2.6E-15 125.5 11.0 168 403-599 352-531 (591)
418 cd03280 ABC_MutS2 MutS2 homolo 99.2 1.3E-10 2.8E-15 115.1 9.9 132 404-575 18-151 (200)
419 COG3845 ABC-type uncharacteriz 99.1 8.5E-10 1.8E-14 120.3 14.8 265 327-616 168-496 (501)
420 cd03277 ABC_SMC5_euk Eukaryoti 99.1 5.2E-10 1.1E-14 112.3 11.0 92 499-604 121-213 (213)
421 COG1245 Predicted ATPase, RNas 99.1 1.1E-10 2.4E-15 125.7 5.0 138 411-560 98-262 (591)
422 COG2401 ABC-type ATPase fused 99.1 2E-10 4.3E-15 122.5 6.8 177 400-604 396-588 (593)
423 cd03283 ABC_MutS-like MutS-lik 99.1 7.3E-10 1.6E-14 110.1 10.3 36 401-440 15-50 (199)
424 cd03243 ABC_MutS_homologs The 99.0 7.2E-10 1.6E-14 109.9 9.5 129 408-577 24-153 (202)
425 cd03239 ABC_SMC_head The struc 99.0 2.9E-09 6.2E-14 104.0 11.5 62 505-573 95-156 (178)
426 PRK00635 excinuclease ABC subu 99.0 1.9E-09 4E-14 134.1 12.6 67 499-573 804-870 (1809)
427 KOG0060 Long-chain acyl-CoA tr 99.0 3.4E-09 7.4E-14 117.2 13.0 144 393-545 441-605 (659)
428 COG4170 SapD ABC-type antimicr 99.0 2.5E-09 5.4E-14 105.4 10.2 187 393-605 13-239 (330)
429 cd03227 ABC_Class2 ABC-type Cl 99.0 4.9E-09 1.1E-13 100.5 11.7 121 416-576 22-142 (162)
430 PRK00349 uvrA excinuclease ABC 99.0 3E-09 6.5E-14 126.7 12.3 64 499-573 825-891 (943)
431 TIGR00630 uvra excinuclease AB 98.9 6E-09 1.3E-13 124.0 13.4 67 499-573 823-889 (924)
432 COG1703 ArgK Putative periplas 98.9 1.2E-08 2.6E-13 105.6 13.2 145 412-577 48-202 (323)
433 cd03114 ArgK-like The function 98.9 9.7E-09 2.1E-13 97.4 10.6 138 417-575 1-148 (148)
434 smart00053 DYNc Dynamin, GTPas 98.9 1.3E-08 2.9E-13 104.0 11.9 159 417-590 28-217 (240)
435 KOG0062 ATPase component of AB 98.9 7.4E-09 1.6E-13 113.3 9.5 141 417-573 392-537 (582)
436 cd03282 ABC_MSH4_euk MutS4 hom 98.8 8.8E-09 1.9E-13 102.8 8.7 136 400-577 16-153 (204)
437 cd03281 ABC_MSH5_euk MutS5 hom 98.8 4.8E-08 1E-12 98.1 13.4 132 404-576 20-155 (213)
438 PF03308 ArgK: ArgK protein; 98.8 2E-08 4.4E-13 102.6 10.2 145 412-577 26-180 (266)
439 smart00534 MUTSac ATPase domai 98.8 1.7E-08 3.6E-13 99.0 8.5 123 417-577 1-124 (185)
440 KOG0064 Peroxisomal long-chain 98.8 1.7E-08 3.7E-13 110.5 9.2 164 393-575 489-669 (728)
441 cd03285 ABC_MSH2_euk MutS2 hom 98.8 2.1E-08 4.6E-13 101.3 9.3 134 401-577 18-155 (222)
442 cd03241 ABC_RecN RecN ATPase i 98.7 1E-07 2.2E-12 99.3 11.6 94 505-617 171-268 (276)
443 TIGR00101 ureG urease accessor 98.7 1E-07 2.2E-12 94.8 10.6 169 415-608 1-188 (199)
444 PTZ00132 GTP-binding nuclear p 98.7 6.2E-08 1.3E-12 96.5 9.0 52 501-559 144-205 (215)
445 cd03287 ABC_MSH3_euk MutS3 hom 98.7 2.3E-07 5E-12 93.9 12.5 137 401-577 19-156 (222)
446 TIGR00073 hypB hydrogenase acc 98.6 3.5E-07 7.6E-12 91.1 11.6 168 412-605 19-196 (207)
447 PRK13768 GTPase; Provisional 98.6 4.6E-07 1E-11 93.4 12.7 160 415-578 2-176 (253)
448 KOG0065 Pleiotropic drug resis 98.6 1.1E-07 2.4E-12 113.9 9.1 154 399-561 127-310 (1391)
449 KOG0066 eIF2-interacting prote 98.6 2E-08 4.3E-13 107.7 2.3 158 400-573 277-467 (807)
450 cd03284 ABC_MutS1 MutS1 homolo 98.6 4.2E-07 9.2E-12 91.5 11.7 36 401-439 19-54 (216)
451 TIGR01069 mutS2 MutS2 family p 98.5 2.1E-07 4.5E-12 109.6 8.9 132 406-577 314-447 (771)
452 PF03029 ATP_bind_1: Conserved 98.4 1.4E-06 3.1E-11 89.0 10.8 146 420-578 1-170 (238)
453 PF07015 VirC1: VirC1 protein; 98.4 7.1E-06 1.5E-10 83.1 14.9 134 422-576 9-152 (231)
454 PF00009 GTP_EFTU: Elongation 98.4 6.6E-07 1.4E-11 87.5 6.7 160 416-605 4-176 (188)
455 cd00820 PEPCK_HprK Phosphoenol 98.4 3.7E-07 8E-12 82.0 4.2 45 401-453 3-47 (107)
456 PRK10463 hydrogenase nickel in 98.3 2.3E-06 4.9E-11 89.7 10.5 165 417-607 106-280 (290)
457 cd01124 KaiC KaiC is a circadi 98.3 2.4E-06 5.2E-11 82.7 9.8 136 417-575 1-140 (187)
458 PRK00635 excinuclease ABC subu 98.3 3E-06 6.5E-11 106.2 12.3 96 500-604 1695-1794(1809)
459 cd04165 GTPBP1_like GTPBP1-lik 98.3 1.9E-06 4.2E-11 87.3 8.3 71 495-577 81-151 (224)
460 TIGR02858 spore_III_AA stage I 98.3 5.3E-06 1.1E-10 86.4 11.2 38 416-453 112-149 (270)
461 PHA02518 ParA-like protein; Pr 98.3 1.6E-05 3.5E-10 78.4 14.1 158 417-596 2-165 (211)
462 PRK08533 flagellar accessory p 98.3 6.9E-06 1.5E-10 83.5 11.6 134 410-575 21-163 (230)
463 PF02463 SMC_N: RecF/RecN/SMC 98.2 9.9E-06 2.1E-10 81.0 12.3 63 504-574 136-198 (220)
464 COG0178 UvrA Excinuclease ATPa 98.2 4.2E-06 9.1E-11 96.3 10.6 108 502-617 820-930 (935)
465 PF10662 PduV-EutP: Ethanolami 98.2 2.5E-06 5.4E-11 80.5 7.3 131 417-608 3-138 (143)
466 TIGR03238 dnd_assoc_3 dnd syst 98.2 5.9E-07 1.3E-11 99.1 3.5 49 402-454 21-70 (504)
467 cd01888 eIF2_gamma eIF2-gamma 98.2 8.3E-06 1.8E-10 81.0 11.3 23 417-439 2-24 (203)
468 COG1159 Era GTPase [General fu 98.2 9.5E-06 2.1E-10 84.4 12.0 120 416-580 7-130 (298)
469 PRK15494 era GTPase Era; Provi 98.2 1.1E-05 2.3E-10 86.8 12.6 163 400-607 32-207 (339)
470 PF02421 FeoB_N: Ferrous iron 98.2 4.2E-06 9.2E-11 80.2 8.3 140 417-608 2-153 (156)
471 PRK12337 2-phosphoglycerate ki 98.2 3.5E-06 7.7E-11 93.0 8.8 108 338-455 179-291 (475)
472 cd00881 GTP_translation_factor 98.2 1.3E-05 2.8E-10 76.7 11.1 126 418-577 2-127 (189)
473 KOG0063 RNAse L inhibitor, ABC 98.2 3.7E-06 8.1E-11 90.7 7.9 127 403-547 352-493 (592)
474 cd03286 ABC_MSH6_euk MutS6 hom 98.2 1.4E-05 3.1E-10 80.6 11.6 135 401-576 18-154 (218)
475 COG0378 HypB Ni2+-binding GTPa 98.2 6.6E-06 1.4E-10 80.9 8.8 169 413-607 10-192 (202)
476 PRK00089 era GTPase Era; Revie 98.2 1.7E-05 3.8E-10 82.9 12.4 119 416-577 6-126 (292)
477 cd01120 RecA-like_NTPases RecA 98.2 9.8E-06 2.1E-10 75.4 9.4 37 417-453 1-37 (165)
478 cd03112 CobW_like The function 98.2 1.2E-05 2.6E-10 76.9 10.2 145 417-576 2-158 (158)
479 PRK00409 recombination and DNA 98.1 4.7E-06 1E-10 98.5 8.7 123 416-577 328-452 (782)
480 cd04163 Era Era subfamily. Er 98.1 1.7E-05 3.6E-10 73.5 10.6 23 416-438 4-26 (168)
481 COG3640 CooC CO dehydrogenase 98.1 4.4E-05 9.6E-10 77.1 14.1 161 417-597 2-215 (255)
482 cd04155 Arl3 Arl3 subfamily. 98.1 2E-05 4.3E-10 74.9 11.2 24 415-438 14-37 (173)
483 cd00880 Era_like Era (E. coli 98.1 1.7E-05 3.7E-10 72.2 9.3 89 497-599 44-145 (163)
484 cd01130 VirB11-like_ATPase Typ 98.1 3.9E-06 8.4E-11 82.3 5.3 42 409-452 21-62 (186)
485 cd01881 Obg_like The Obg-like 98.1 1.4E-05 3E-10 75.7 9.0 19 420-438 1-19 (176)
486 cd00154 Rab Rab family. Rab G 98.1 3.6E-05 7.9E-10 70.6 11.4 98 498-605 49-151 (159)
487 cd01891 TypA_BipA TypA (tyrosi 98.1 5.9E-05 1.3E-09 73.9 13.4 109 497-619 64-187 (194)
488 PRK15467 ethanolamine utilizat 98.1 2.7E-05 5.7E-10 74.3 10.6 133 417-608 3-139 (158)
489 cd04171 SelB SelB subfamily. 98.1 4.4E-05 9.5E-10 71.3 11.8 96 498-606 51-156 (164)
490 cd03242 ABC_RecF RecF is a rec 98.1 1.9E-05 4E-10 82.1 10.2 42 505-547 184-229 (270)
491 cd02033 BchX Chlorophyllide re 98.0 5.4E-05 1.2E-09 81.0 13.4 169 414-597 30-236 (329)
492 cd04160 Arfrp1 Arfrp1 subfamil 98.0 2.8E-05 6E-10 73.4 10.1 119 418-577 2-120 (167)
493 PRK06793 fliI flagellum-specif 98.0 2.4E-05 5.2E-10 86.3 11.0 145 400-583 144-294 (432)
494 cd00879 Sar1 Sar1 subfamily. 98.0 2E-05 4.2E-10 76.5 9.0 31 404-437 11-41 (190)
495 cd02023 UMPK Uridine monophosp 98.0 8.3E-06 1.8E-10 80.4 6.4 37 417-455 1-37 (198)
496 cd01898 Obg Obg subfamily. Th 98.0 5.5E-05 1.2E-09 71.4 11.8 106 499-607 49-162 (170)
497 cd04164 trmE TrmE (MnmE, ThdF, 98.0 2.8E-05 6.2E-10 71.8 9.5 92 498-606 49-147 (157)
498 PRK07721 fliI flagellum-specif 98.0 6.3E-05 1.4E-09 83.4 13.0 52 399-453 145-196 (438)
499 cd01887 IF2_eIF5B IF2/eIF5B (i 98.0 0.00011 2.3E-09 69.2 12.8 67 497-577 49-115 (168)
500 TIGR00436 era GTP-binding prot 98.0 4.8E-05 1E-09 79.0 11.4 144 417-607 2-155 (270)
No 1
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-108 Score=866.00 Aligned_cols=568 Identities=50% Similarity=0.794 Sum_probs=444.8
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHHhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007024 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (621)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~~~~~l~w~~~n~~~lvfv~vyq~~l~ 80 (621)
|||+|.||||||+||||++.....+++ |||+||++||+|||++..+|.++ .|||||+++|+++||||+|||+|++
T Consensus 1 Mld~faIFtkgG~vLw~~~~~~~~~~~-~in~lI~~~ll~er~~~~~~~~~----~yTlk~q~~N~~~lvfvvvfqki~~ 75 (587)
T KOG0781|consen 1 MLDQFAIFTKGGLVLWCYQEVGDNLKG-PINALIRSVLLSERGGVNSFTFE----AYTLKYQLDNQYSLVFVVVFQKILT 75 (587)
T ss_pred CcceeeeecCCcEEEEEecccchhccc-hHHHHHHHHHHHhhcCcccCchh----heeEeeeecCCccEEEEEEEeccch
Confidence 999999999999999998877666777 99999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcC--CCccchHHHHHHHHHHHHHHHHHh---hh-cccccCCCCcccccCCCCcCCCCcc
Q 007024 81 LLYVDDLLAMMKQSFSEIYDPKR--TDYSDFDEMFRQLRKEAEARAEEL---KK-SKQVTKPMNNLKKQGGQLQKGGFER 154 (621)
Q Consensus 81 l~y~d~ll~~~~~~f~~~y~~~~--~~~~~f~~~f~~~l~~~e~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (621)
|.|+|+||++++..|+..|.+.. ..+-+|.+.|..+|+......... .+ +..+. .++..++.........
T Consensus 76 L~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~rq~~ne~t~~k~~~pi~~~---~~~~~~K~~~~v~~~~- 151 (587)
T KOG0781|consen 76 LTYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKLRQVANEATEYKIRAPITMK---KSEDLEKAKDPVRSPI- 151 (587)
T ss_pred hhhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHHhhcccccchhhhcccchhh---hhhcchhhhhhhcccc-
Confidence 99999999999999999998633 334455666666666544321111 11 11111 1222222111100000
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccccccccccCCCCCCCCCCccccchHHHHHhhccCCCCcccccCC
Q 007024 155 GSNRSGGGSANDDGDSDNMRGRKLENGHSNVGNVEIEESRVTGVANGKENTSSNIGAFDVSKLQKLRNKGGKKTDTVVSK 234 (621)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (621)
..+.+..+.+.. +..+++. .+...+ ..++++-+..++++ ...
T Consensus 152 -------e~~~d~s~kk~~------nt~kng~----------------~~~~h~------~~~kk~~~~tkkKg---~~s 193 (587)
T KOG0781|consen 152 -------ETNGDKSAKKKK------NTKKNGA----------------KKEGHD------EEFKKKHRETKKKG---NKS 193 (587)
T ss_pred -------ccccccchhccc------ccccCCC----------------cccchh------hhhhhhhccccccc---ccC
Confidence 000000000000 0111111 000000 11222211111110 011
Q ss_pred CCCCCCCCccccCCccCCCCC--CCCCCccCCCCCCCCC----cchhhhhhcCCCCc-CcccccCCCCcchhhhhhcCCC
Q 007024 235 GSNPDPKKKITKKNRVWDDSP--PESKLDFTDPAGGNGS----NIEVEAADHGESMM-DKEEVFSSDSESEEDEEVGKHN 307 (621)
Q Consensus 235 ~~~~~~~~k~~k~~r~w~~~~--~~~~ld~s~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (621)
++...|++|.+|++|+||+++ +.+.||||++..++++ .++......+.|.. +++-+.+++++++ +++ ..+.
T Consensus 194 ~~~~~p~kKGkk~~RvWdd~g~~d~~~ld~sss~sn~e~a~~e~vn~~~~~s~~~~~~~l~~~~~d~~~s~-~~~-~~~~ 271 (587)
T KOG0781|consen 194 TKVDAPKKKGKKAPRVWDDAGCEDEKVLDYSSSTSNGENALSETVNLDQGESMGGQLQDLDKDSSDDEGSA-DNS-TDPA 271 (587)
T ss_pred CCCCCchhhcccccchhhhccchhhcccccCCccccccchhHHHhhhhhhccccccccccccccccccccc-ccc-cchh
Confidence 122244566666699999876 5788999998886532 22222222222222 1111111111111 111 1112
Q ss_pred CCCCcccchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHH
Q 007024 308 KPDAKKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAME 387 (621)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~ 387 (621)
...+..+||| +||++++|++.|.++||.|++++|++||+.+||++++|++||++|...|.|+++++|+++.++++++|+
T Consensus 272 ~~~k~~g~aF-g~fkglvG~K~L~eeDL~pvL~kM~ehLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~ 350 (587)
T KOG0781|consen 272 ATKKTVGGAF-GLFKGLVGSKSLSEEDLNPVLDKMTEHLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALR 350 (587)
T ss_pred hhhcchhhHH-HHHHhhcccccccHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 2344567777 499999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh
Q 007024 388 EALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR 467 (621)
Q Consensus 388 ~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~ 467 (621)
++|++||+|.+++|+|++|.-....++||+|+|||+|||||||+|+|||+||..++.+|+|++|||||.||||||++|.+
T Consensus 351 daLvQILTP~~sVDlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~ 430 (587)
T KOG0781|consen 351 DALVQILTPQRSVDLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE 430 (587)
T ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred hc------ccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 468 RL------QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 468 ~L------~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
+| .|++|+.+|++|++.++++|++++...++|++|+||+||||.+.+||++|.+++..+.||.||+|.|+++|.
T Consensus 431 rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~ 510 (587)
T KOG0781|consen 431 RLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN 510 (587)
T ss_pred HHHHhccchhHHHhhhcCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc
Confidence 99 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
|+++|+..|+++|.+.. .++.||+|++||+|++++++|++++|+|.+|.||+|+|+||+|.||+.++++++|+.||+
T Consensus 511 dsv~q~~~fn~al~~~~---~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg~gqtysdlr~l~v~~vv~~lm~ 587 (587)
T KOG0781|consen 511 DSVDQLKKFNRALADHS---TPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVGVGQTYSDLRKLNVKAVVATLMK 587 (587)
T ss_pred HHHHHHHHHHHHHhcCC---CccccceEEEEeccchhhHHHHHhhheeecCCceEEEecCcchhhhhhccHHHHHHHhhC
Confidence 99999999999997765 578999999999999999999999999999999999999999999999999999999996
No 2
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.7e-49 Score=405.82 Aligned_cols=275 Identities=40% Similarity=0.626 Sum_probs=246.9
Q ss_pred ccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-hcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc
Q 007024 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAAS-LEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH 407 (621)
Q Consensus 329 ~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~-l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs 407 (621)
...+.+.+..+++|++.|+++||+.+++..||+.++.. ...+...+ ...++.+|.+.|..++.|....+....+
T Consensus 59 ~~~~~~de~~~eeLE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~~----~~~v~~~l~~~l~~il~~~~~~~~~~~~- 133 (340)
T COG0552 59 KIKEKLDEDLLEELEELLIEADVGVETAEEIIEELRKREGKKKKIKD----EETVKEALREALIEILRPVDKVDLPLEI- 133 (340)
T ss_pred ccccchhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhcccccCCC----HHHHHHHHHHHHHHHhcccccccchhhh-
Confidence 34556778899999999999999999999999999985 33333322 6788999999999999876554332222
Q ss_pred cccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHH
Q 007024 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (621)
Q Consensus 408 ~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~ 487 (621)
..+++|+++.|||+||+||||+++|||.+|+..+.+|++.++||||.||++||..|++++++++....++.||+.++.
T Consensus 134 --~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVaf 211 (340)
T COG0552 134 --PKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAF 211 (340)
T ss_pred --ccCCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHH
Confidence 225679999999999999999999999999999999999999999999999999999999999988679999999999
Q ss_pred HHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcE------EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL------VLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl------ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
++++++...++|++++|||||+|.+..||.+|.++.++.+|+. +|+|.|+|+|+|+..|++.|++++
T Consensus 212 DAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------- 284 (340)
T COG0552 212 DAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------- 284 (340)
T ss_pred HHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999998876665 788779999999999999999876
Q ss_pred CCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 562 NPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 562 ~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
++|++|+||+|.+ .+.|+++++++.+++||.|+|.||.|.||++|++++||+.||.
T Consensus 285 ---~l~GiIlTKlDgt-AKGG~il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L~~ 340 (340)
T COG0552 285 ---GLDGIILTKLDGT-AKGGIILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDALLG 340 (340)
T ss_pred ---CCceEEEEecccC-CCcceeeeHHHHhCCCEEEEeCCCChhhccccCHHHHHHHhhC
Confidence 8999999999987 8999999999999999999999999999999999999999984
No 3
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-45 Score=389.33 Aligned_cols=288 Identities=32% Similarity=0.551 Sum_probs=269.9
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
..|++.++.+.|...++++++..++++++.+|+++||+..++..+++.|+++..|.++..-.++...+...+.++|++++
T Consensus 7 ~~l~~~l~kl~g~~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~ll 86 (451)
T COG0541 7 DRLSNALKKLRGKGRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLL 86 (451)
T ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999999999999999999999999999999999999887777788889999999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
++... .++ +....|.+|.+||..|+||||++.|||.||+..+.+|++++||+||.||++||+++++..++|+|
T Consensus 87 G~~~~-----~~~--l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f 159 (451)
T COG0541 87 GGENS-----ELN--LAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF 159 (451)
T ss_pred CCCCc-----ccc--cCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee
Confidence 86221 123 33556889999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
....+.+|..+++++++.+....+|++++|||||.+.+..||.+|..+....+|+.+|||.+++.|+|++++++.|++.+
T Consensus 160 ~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l 239 (451)
T COG0541 160 GSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL 239 (451)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence 88778899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+++++|+||+|.. .+.|+++|+.+.||.||.|+|+|++++||++|+|++++++||
T Consensus 240 ----------~itGvIlTKlDGd-aRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRIL 294 (451)
T COG0541 240 ----------GITGVILTKLDGD-ARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRIL 294 (451)
T ss_pred ----------CCceEEEEcccCC-CcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhc
Confidence 8999999999996 899999999999999999999999999999999999999997
No 4
>PRK14974 cell division protein FtsY; Provisional
Probab=100.00 E-value=1.4e-43 Score=374.92 Aligned_cols=291 Identities=45% Similarity=0.724 Sum_probs=259.8
Q ss_pred cccchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHH
Q 007024 312 KKTGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALV 391 (621)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~ 391 (621)
...|||.++.... ++++++++.+++|+..|++.||+.+++++|++.+++.+.|.+...+......++.+|.+.|.
T Consensus 45 ~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 119 (336)
T PRK14974 45 EKPGFFDKAKITE-----IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALL 119 (336)
T ss_pred cccCHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHH
Confidence 4679988775333 89999999999999999999999999999999999999988887777778888999999999
Q ss_pred HHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc
Q 007024 392 RILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV 471 (621)
Q Consensus 392 ~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v 471 (621)
+++.+....+.+..+ ...++|++++|+|||||||||++++||.++...+.+|.+.++|+||.|+++|++.|++++++
T Consensus 120 ~~l~~~~~~~~~~~~---~~~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 120 EVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred HHhCCCcchhhhhhh---hccCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC
Confidence 999754322221111 12456889999999999999999999999998888999999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
+++...++.++..++.++++++...++|+++|||+|+++.+..++..|.++.+..+|+.++||.+++.|.|...+++.|+
T Consensus 197 ~v~~~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 197 KVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred ceecccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 99888888899888888888888888999999999999999999999999999899999999999999999999887776
Q ss_pred HHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
+. .+++++|+||+|++ .++|.++++++.+++||.|+|+||+|+||+.|+++++|++||.
T Consensus 277 ~~----------~~~~giIlTKlD~~-~~~G~~ls~~~~~~~Pi~~i~~Gq~v~Dl~~~~~~~~v~~llg 335 (336)
T PRK14974 277 EA----------VGIDGVILTKVDAD-AKGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335 (336)
T ss_pred hc----------CCCCEEEEeeecCC-CCccHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 54 37899999999997 8999999999999999999999999999999999999999984
No 5
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=100.00 E-value=2.6e-43 Score=381.75 Aligned_cols=288 Identities=26% Similarity=0.478 Sum_probs=261.7
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
..|++.|+++.|...|+++++++.+++++.+|+++||+..++.+|++.|++...|..+....+....+...+.+.|++++
T Consensus 7 ~~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l 86 (429)
T TIGR01425 7 SSITSALRSMSNATVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLV 86 (429)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHh
Confidence 34778999999999999999999999999999999999999999999999998888776666777789999999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
.+.... +....+.|++++|+|++||||||++++||.++...+.+|.++++|+||+|+++|++++++.+++|++
T Consensus 87 ~~~~~~-------~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 87 DPGVEA-------FTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred CCCCcc-------ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 764321 2233566889999999999999999999999988888999999999999999999999999999998
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
......++..++.++++.+...++|+++|||+|+.+.+..++.+|.++....+|+.++||.+++.|.++.++++.|++.+
T Consensus 160 ~~~~~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~ 239 (429)
T TIGR01425 160 GSYTESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSV 239 (429)
T ss_pred eecCCCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhcc
Confidence 76666788888888888887778999999999999999999999999999999999999999999999999988886543
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+++++|+||+|++ .++|.++++++.+++||.|+|+||+|+||+.|+|++++++||
T Consensus 240 ----------~~~g~IlTKlD~~-argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~ril 294 (429)
T TIGR01425 240 ----------DVGSVIITKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLL 294 (429)
T ss_pred ----------CCcEEEEECccCC-CCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHh
Confidence 7899999999997 899999999999999999999999999999999999999987
No 6
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-42 Score=358.32 Aligned_cols=289 Identities=31% Similarity=0.529 Sum_probs=269.9
Q ss_pred cchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007024 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (621)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~i 393 (621)
++.+.+.|+.+......++..|...|++|+++|++.||++.++.+|.+++++.+...++..-......+..++.++|+++
T Consensus 7 GrrI~~a~~~~s~~t~~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl 86 (483)
T KOG0780|consen 7 GRRITSAFSRMSNATSIDETALNTMLKEICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKL 86 (483)
T ss_pred chhHHHHHHHhccCCcchHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHH
Confidence 45677889999988899999999999999999999999999999999999999877666655567788999999999999
Q ss_pred cCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccce
Q 007024 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (621)
Q Consensus 394 l~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l 473 (621)
+.|..+ .|....++|.+|.|||.+|+||||+|.++|++|+..+.++.+++.||||.||.+||+..+....+|+
T Consensus 87 ~dp~~~-------~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ 159 (483)
T KOG0780|consen 87 LDPGKS-------ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF 159 (483)
T ss_pred hCCCCc-------ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCee
Confidence 998644 2445578899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 474 ~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
|..+...+|..++.+.++.++.+++|++++|||||.+|...|+.+|..+.+..+|+.+|||.++..|+.+.+|++.|++.
T Consensus 160 ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 160 YGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred EecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+ .+.++|+||+|.. .+.|.++|.+..|+.||.|||||++++||++|+|+.||++||
T Consensus 240 v----------dvg~vIlTKlDGh-akGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlL 295 (483)
T KOG0780|consen 240 V----------DVGAVILTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLL 295 (483)
T ss_pred h----------ccceEEEEecccC-CCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHh
Confidence 5 8999999999997 899999999999999999999999999999999999999998
No 7
>PRK10867 signal recognition particle protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=358.87 Aligned_cols=287 Identities=34% Similarity=0.563 Sum_probs=256.6
Q ss_pred hHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
-|++.|+++.|...++++++++.+++++.+|+++||+.+++.+|++.|++.+.+.++....+....+..++.++|.+++.
T Consensus 8 ~l~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~l~ 87 (433)
T PRK10867 8 RLSSAFKKLRGKGRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEILG 87 (433)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999999999999999988776655445566788899999999997
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
+... .+. +..+.|.+++|+||+||||||++.+||.++... +.+|+++++|+||.++++|++++++..++|++
T Consensus 88 ~~~~-----~~~--~~~~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 88 GENS-----ELN--LAAKPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred CCcc-----eee--ecCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 5321 122 234568899999999999999999999998877 78999999999999999999999999999998
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
......++..++.++++.+...++|++++||+|+.+.+..++.+|..+.....|+.++||.+++.|.|.+.+++.|++.
T Consensus 161 ~~~~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~F~~~- 239 (433)
T PRK10867 161 PSGDGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEA- 239 (433)
T ss_pred ecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHHHHhh-
Confidence 7766778888888888888778899999999999999999999999998888999999999999999999888777643
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
.+++++|+||+|+. .+.|.++++++.+++||.|+|+||+++||++|+|++++++||
T Consensus 240 ---------~~i~giIlTKlD~~-~rgG~alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~il 295 (433)
T PRK10867 240 ---------LGLTGVILTKLDGD-ARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRIL 295 (433)
T ss_pred ---------CCCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHh
Confidence 37899999999997 799999999999999999999999999999999999999997
No 8
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=100.00 E-value=3.4e-39 Score=352.11 Aligned_cols=284 Identities=29% Similarity=0.469 Sum_probs=249.6
Q ss_pred hHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
.|++.|+++.|.+.+|++++++.+++++.+|+++||+.+++++|++.|++.+.+..+....+....+...+.++|.+++.
T Consensus 4 ~l~~~~~~l~~~~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 4 SLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999999999999999988876554445556777889999999987
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~ 475 (621)
+.... +.+ .+.|++++|+|++|+||||++++||.++...+.+|.++++|+||.++++|++.+++.+++|++.
T Consensus 84 ~~~~~-----~~~---~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~ 155 (437)
T PRK00771 84 EETEP-----LVL---PLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYG 155 (437)
T ss_pred CCccc-----ccc---CCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence 54321 111 1457899999999999999999999999888889999999999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
.....++..++.++++.+. .+|++++||+|+.+....++.+|..+.+...|+.++||.+++.|.|...+++.|++.
T Consensus 156 ~~~~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~~~-- 231 (437)
T PRK00771 156 DPDNKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEA-- 231 (437)
T ss_pred cCCccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHHhc--
Confidence 6556677777777777654 359999999999999999999999998888999999999999999888877666543
Q ss_pred HhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
.+++++|+||+|+. .++|.++|+++.+++||.|+|+||+|+||++|+|++++++||
T Consensus 232 --------l~i~gvIlTKlD~~-a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~il 287 (437)
T PRK00771 232 --------VGIGGIIITKLDGT-AKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLL 287 (437)
T ss_pred --------CCCCEEEEecccCC-CcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHh
Confidence 37899999999997 899999999999999999999999999999999999999997
No 9
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=100.00 E-value=1.1e-38 Score=336.28 Aligned_cols=277 Identities=34% Similarity=0.555 Sum_probs=234.1
Q ss_pred HHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCC
Q 007024 319 SMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRR 398 (621)
Q Consensus 319 ~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~ 398 (621)
.-+.++.+.+.++++ .+++++++|++.||+++++++|++.++..+.+....+ ...++..+.+.|.+++.+..
T Consensus 33 ~~~~~l~~~~~~~~~----~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~ 104 (318)
T PRK10416 33 EGINGLFAKKKIDED----LLEELEELLIEADVGVETTEEIIEELRERVKRKNLKD----PEELKELLKEELAEILEPVE 104 (318)
T ss_pred HHHHHHhCCCCCCHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCC----HHHHHHHHHHHHHHHhCcCC
Confidence 345555556667764 6688999999999999999999999998876554322 34577888999999886422
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCC
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~ 478 (621)
. .+. +..++|.+++|+|||||||||++++||+++.+.+++|.++++|+||+++++|+..++++.+++++....
T Consensus 105 ~-----~~~--~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 105 K-----PLN--IEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKE 177 (318)
T ss_pred c-----ccc--ccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCC
Confidence 1 112 223345699999999999999999999999999999999999999999999999999999999887777
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhc------CCCcEEEEEeCCcCCCCHHHHHHHHHH
Q 007024 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (621)
Q Consensus 479 ~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~------~~PdlILLVDEpt~GlD~~~q~~~f~~ 552 (621)
+.++...+.+++..+...++|+++|||+|+++.+..+|.+|.++.+. ..|+.++||.+++.|.+...+...|++
T Consensus 178 ~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~ 257 (318)
T PRK10416 178 GADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHE 257 (318)
T ss_pred CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHh
Confidence 77887777777777777889999999999999999999999887654 468888999999999998888766653
Q ss_pred HHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 553 KLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
. .+++++|+||+|++ .++|.++++++.+++||.|+|+||+++||+.|+++++++.||.
T Consensus 258 ~----------~~~~giIlTKlD~t-~~~G~~l~~~~~~~~Pi~~v~~Gq~~~Dl~~~~~~~~~~~ll~ 315 (318)
T PRK10416 258 A----------VGLTGIILTKLDGT-AKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315 (318)
T ss_pred h----------CCCCEEEEECCCCC-CCccHHHHHHHHHCCCEEEEeCCCChhhCccCCHHHHHHHHhC
Confidence 3 37899999999998 8999999999999999999999999999999999999999983
No 10
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=100.00 E-value=1e-38 Score=347.53 Aligned_cols=288 Identities=31% Similarity=0.556 Sum_probs=255.1
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
..|++.|+++.|.+.++++++++.+++++.+|+++||+.+++..|++.|++.+.|.++....+....+...+.++|.+++
T Consensus 6 ~~~~~~~~~l~~~~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~l 85 (428)
T TIGR00959 6 ERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAIL 85 (428)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHh
Confidence 44778999999999999999999999999999999999999999999999988877665444556678888999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccceeeeeehhhhhhhhcccce
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPI 473 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l 473 (621)
.+... .+....+.|++++++|++||||||++.+||.++. ..+.+|.+++||+||.++++|+..+++.+++|+
T Consensus 86 ~~~~~-------~~~~~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 86 GGENA-------SLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred CCCCc-------ccccCCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 75421 1222356788999999999999999999999876 467899999999999999999999999999999
Q ss_pred eecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 474 FEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 474 ~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
+......++..++.++++.+...++|++++||+|+.+.+..++..|.++....+|+.++||.++++|.|...+++.|++.
T Consensus 159 ~~~~~~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~ 238 (428)
T TIGR00959 159 FALGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNER 238 (428)
T ss_pred EecCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhh
Confidence 87666677888888888887778899999999999999899999999998889999999999999999888887777533
Q ss_pred HHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
.+++++|+||+|+. .+.|.++++++.+++||.|+|+||+++||++|+|++++++||
T Consensus 239 ----------v~i~giIlTKlD~~-~~~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iL 294 (428)
T TIGR00959 239 ----------LGLTGVVLTKLDGD-ARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRIL 294 (428)
T ss_pred ----------CCCCEEEEeCccCc-ccccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHh
Confidence 37899999999997 799999999999999999999999999999999999999997
No 11
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=100.00 E-value=3.4e-37 Score=318.90 Aligned_cols=264 Identities=39% Similarity=0.577 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCC
Q 007024 335 LEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRK 414 (621)
Q Consensus 335 l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Ge 414 (621)
+++.+++++..|++.||+++++++|++.+.+.+.+.+.... ..+...+.+.|.+++.+.. ..+....++
T Consensus 3 ~~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~~~~~~~-------~~~~~~~~~ 71 (272)
T TIGR00064 3 DEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDA----ELLKEILKEYLKEILKETD-------LELIVEENK 71 (272)
T ss_pred cHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCH----HHHHHHHHHHHHHHHcccc-------hhhcccCCC
Confidence 46789999999999999999999999999988877665542 3455667777777775321 112222455
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
|++++|+||+||||||++++||.++...+.+|.++++|+||+++++|+..|+++++++++...+..++...+.+++..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999999998888899999999999999999999999999998877777788777777777777
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCC------CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceE
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNN------PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~------PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (621)
..++|++++||+|+.+.+..++.+|.++.+..+ |+.++||.+++.|.+...+...|.+. .++++
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~----------~~~~g 221 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEA----------VGLTG 221 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhh----------CCCCE
Confidence 788999999999999999999999998887766 99999999999998888776666433 36899
Q ss_pred EEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 569 ILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 569 IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+|+||+|++ .+.|.++++.+.+++||.|+|+||++.||+.|++++++++||
T Consensus 222 ~IlTKlDe~-~~~G~~l~~~~~~~~Pi~~~~~Gq~~~dl~~~~~~~~~~~ll 272 (272)
T TIGR00064 222 IILTKLDGT-AKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 272 (272)
T ss_pred EEEEccCCC-CCccHHHHHHHHHCcCEEEEeCCCChHhCccCCHHHHHHHhC
Confidence 999999998 899999999999999999999999988999999999999986
No 12
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=100.00 E-value=6e-39 Score=333.13 Aligned_cols=114 Identities=53% Similarity=0.832 Sum_probs=71.2
Q ss_pred CChhHHHHHHhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccchhhHHHHHHHHHHHHHHhcCCcC---
Q 007024 27 GSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILHLLYVDDLLAMMKQSFSEIYDPKR--- 103 (621)
Q Consensus 27 ~~~in~li~~~~leer~~~~~~~~~~~~~~~~l~w~~~n~~~lvfv~vyq~~l~l~y~d~ll~~~~~~f~~~y~~~~--- 103 (621)
++|||+||++||||||+++.+|+|| +|+|||+|+|||+||||||||+||||+|||+||++|+++|+++|++.+
T Consensus 1 ~~~in~LI~~vlleeR~~~~~~~~d----~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~ 76 (279)
T PF04086_consen 1 TSPINALIRDVLLEERSGNSSFTYD----NYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQL 76 (279)
T ss_dssp --HHHHHHHHTGGG-----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSS
T ss_pred CchHHHHHHHhheeeccCCCceeEc----CEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 4899999999999999999999999 999999999999999999999999999999999999999999998864
Q ss_pred ------CCccchHHHHHHHHHHHHHHHHHhhh-cccccCCCCcccccCCCC
Q 007024 104 ------TDYSDFDEMFRQLRKEAEARAEELKK-SKQVTKPMNNLKKQGGQL 147 (621)
Q Consensus 104 ------~~~~~f~~~f~~~l~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~ 147 (621)
..|.+||++|+++|+++|+.+...++ ++.|+ +|++++++++
T Consensus 77 ~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~~~~~~~---~~~~s~k~~~ 124 (279)
T PF04086_consen 77 KPNTSINEYFDFDEEFDQLLKELEARSKSQKRSPKAMR---SFEESKKSKK 124 (279)
T ss_dssp STHHHHT-----HHHHHHHHHHHCCCTT-----------------------
T ss_pred ccccccccchhHHHHHHHHHHHHHHHhccccccccccc---cccccccccc
Confidence 24568999999999999998776444 33333 5777766655
No 13
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=100.00 E-value=6.3e-37 Score=302.57 Aligned_cols=195 Identities=41% Similarity=0.615 Sum_probs=176.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
|++++||||+||||||+++|||.++...+.+|.++++|+||+|+++||++|++.+++|++......++..++.++++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 78999999999999999999999988778899999999999999999999999999999887777789888888888888
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..++|+++|||+|+.+.+..++..|.++++...|+.++||..++.+.+...+...|.+. .+++++|+||+
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~----------~~~~~lIlTKl 150 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEA----------FGIDGLILTKL 150 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHH----------SSTCEEEEEST
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhc----------ccCceEEEEee
Confidence 78899999999999999999999999999888999999999999998877766555443 37899999999
Q ss_pred cccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 575 DTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 575 De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
|++ .+.|.++++++.+++||.|+|+||+|.||+.+++++++++||
T Consensus 151 Det-~~~G~~l~~~~~~~~Pi~~it~Gq~V~Dl~~~~~~~l~~~ll 195 (196)
T PF00448_consen 151 DET-ARLGALLSLAYESGLPISYITTGQRVDDLEPASPERLASRLL 195 (196)
T ss_dssp TSS-STTHHHHHHHHHHTSEEEEEESSSSTTGEEE-THHHHHHHHH
T ss_pred cCC-CCcccceeHHHHhCCCeEEEECCCChhcCccCCHHHHHHHhc
Confidence 998 899999999999999999999999999999999999999997
No 14
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=6e-34 Score=302.90 Aligned_cols=254 Identities=22% Similarity=0.353 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCce
Q 007024 337 PALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPY 416 (621)
Q Consensus 337 ~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep~ 416 (621)
..+..+++.|.+.+|.++++.+|++.+........... ...+...+.+.|..++.... . + ..+|+
T Consensus 178 ~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~-------~-~---~~~~~ 242 (436)
T PRK11889 178 FIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENATMIT----EEEVIEYILEDMRSHFNTEN-------V-F---EKEVQ 242 (436)
T ss_pred hHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccccCC----HHHHHHHHHHHHHHHhcccc-------c-c---ccCCc
Confidence 34556888999999999999999999876543322111 23445556666666554210 0 1 22356
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh-
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR- 495 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~- 495 (621)
+++|+|||||||||++++||+.+...+.+|.++.+|+||+|+++|++.|++.+++|++.. .++..+. +++..+..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~---~d~~~L~-~aL~~lk~~ 318 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAMT-RALTYFKEE 318 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEec---CCHHHHH-HHHHHHHhc
Confidence 999999999999999999999988788899999999999999999999999999998753 3455543 55655543
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC-CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G-lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
.++|+++|||+|+.+++..+++.|.+++....|+.++||.+++.+ .|...+.+.| +..+++++|+||+
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F-----------~~~~idglI~TKL 387 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF-----------KDIHIDGIVFTKF 387 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh-----------cCCCCCEEEEEcc
Confidence 468999999999999999999999999988889988888887655 3444444333 2358999999999
Q ss_pred cccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 575 DTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 575 De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
|++ .++|.+++++..+++||+|+|+||+|| ||..++++.+++.||.
T Consensus 388 DET-~k~G~iLni~~~~~lPIsyit~GQ~VPeDI~~A~~~~L~~~llg 434 (436)
T PRK11889 388 DET-ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 434 (436)
T ss_pred cCC-CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 998 799999999999999999999999999 9999999999999873
No 15
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=6.6e-34 Score=324.71 Aligned_cols=254 Identities=27% Similarity=0.368 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCc
Q 007024 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (621)
Q Consensus 336 ~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep 415 (621)
+|....+++.|++.||+++++++|++.+.... . ...+...+.+.|.+.+. ++.++++.+..|+
T Consensus 124 ~~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~---------~-~~~~~~~l~~~L~~~l~------il~~~~~~~~~g~- 186 (767)
T PRK14723 124 DPLRASLFRWLLGAGFSGQLARALLERLPVGY---------D-RPAAMAWIRNELATHLP------VLRDEDALLAQGG- 186 (767)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC---------C-HHHHHHHHHHHHHHHhh------hccCCCcccCCCe-
Confidence 67778899999999999999999999986431 1 12355667777777652 3445566565666
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhc-C-cEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~-~-GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
+++||||||||||||++|||+++... + .+|.++++|+||+|+++|++.|++.++++++... ++.. +.++++.
T Consensus 187 -Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~---~~~~-l~~al~~- 260 (767)
T PRK14723 187 -VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK---DAAD-LRFALAA- 260 (767)
T ss_pred -EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC---CHHH-HHHHHHH-
Confidence 99999999999999999999988644 4 3899999999999999999999999999886432 4544 3555554
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..++|+++|||+|+++.+..++..+..+.....|..++||.+++++.+ .|++++..+... ...+++++|+||
T Consensus 261 -~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~------~l~~i~~~f~~~-~~~~i~glIlTK 332 (767)
T PRK14723 261 -LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD------TLNEVVHAYRHG-AGEDVDGCIITK 332 (767)
T ss_pred -hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH------HHHHHHHHHhhc-ccCCCCEEEEec
Confidence 357899999999999999999999998888888999999999887543 334445444321 123689999999
Q ss_pred ccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 574 FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 574 ~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
+|++ .++|.++++++.+++||.|||+||+|| ||+.|+++.|++.||.
T Consensus 333 LDEt-~~~G~iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 333 LDEA-THLGPALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred cCCC-CCccHHHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhc
Confidence 9998 799999999999999999999999996 9999999999999873
No 16
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=100.00 E-value=8.2e-33 Score=303.97 Aligned_cols=270 Identities=23% Similarity=0.327 Sum_probs=200.3
Q ss_pred cchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007024 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (621)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~i 393 (621)
.++|...+..+.. .......|.+.+++++|++.||+.+++++|++.+...... ..+...+.+.|.+.
T Consensus 176 r~~l~~~~~~l~~---~~~~~~~p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~~~----------~~~~~~l~~~l~~~ 242 (484)
T PRK06995 176 RGMLEEQLASLAW---GERQRRDPVRAALLKHLLAAGFSAQLVRMLVDNLPEGDDA----------EAALDWVQSALAKN 242 (484)
T ss_pred HHHHHHHHHHHhc---cccccccHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhch----------hHHHHHHHHHHHHH
Confidence 3445555555542 2233346888999999999999999999999998765321 12334455555554
Q ss_pred cCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-Cc-EEEEcccccceeeeeehhhhhhhhccc
Q 007024 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KV-SVMMAACDTFRSGAVEQLRTHARRLQV 471 (621)
Q Consensus 394 l~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~G-kV~I~~~Dt~RigaveQl~~~~~~L~v 471 (621)
+. ++.+.++.+..|+ +++||||||||||||+++||+++... ++ +|.++.+|+||+|+++|+++|++.+++
T Consensus 243 l~------~~~~~~~~~~~g~--Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 243 LP------VLDSEDALLDRGG--VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred Hh------hccCccccccCCc--EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 42 2334444455666 99999999999999999999988655 33 899999999999999999999999999
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
+++......+ . ......+.++++++|||+|+.+++..++..+..+.....|...+||.+++.+.+...
T Consensus 315 pv~~~~~~~D---l---~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~------ 382 (484)
T PRK06995 315 PVHAVKDAAD---L---RLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN------ 382 (484)
T ss_pred CeeccCCchh---H---HHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH------
Confidence 8864332222 2 223345667899999999999887666666554444444655666666666553332
Q ss_pred HHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
+++..+ ...+++++|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.|+++.|+++||+
T Consensus 383 ~i~~~f----~~~~~~g~IlTKlDet-~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 383 EVVQAY----RGPGLAGCILTKLDEA-ASLGGALDVVIRYKLPLHYVSNGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred HHHHHh----ccCCCCEEEEeCCCCc-ccchHHHHHHHHHCCCeEEEecCCCChhhhccCCHHHHHHHHhc
Confidence 333333 3458899999999998 799999999999999999999999996 9999999999999884
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.2e-32 Score=292.30 Aligned_cols=252 Identities=24% Similarity=0.353 Sum_probs=202.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEE
Q 007024 341 ALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVF 420 (621)
Q Consensus 341 ~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaL 420 (621)
++++.|.+.||.++++..|.+.+...+......+ ...+...+.+.|.+.+.... ++.+.+++ +++|
T Consensus 146 ~~~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~----~~~v~~~~~~~L~~~l~~~~--------~~~~~~~~--ii~l 211 (407)
T PRK12726 146 DFVKFLKGRGISDTYVADFMQAGRKQFKQVETAH----LDDITDWFVPYLSGKLAVED--------SFDLSNHR--IISL 211 (407)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc----HHHHHHHHHHHhcCcEeeCC--------CceecCCe--EEEE
Confidence 7899999999999999999999977654332222 23455556666666553221 22334555 9999
Q ss_pred EecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh-hcCCC
Q 007024 421 VGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT-RNGSD 499 (621)
Q Consensus 421 VGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~-~~~~d 499 (621)
+||+||||||++++||.++...+.+|.++++|+||+|+++|+++|++.+++|++.. .++..+ .+++..+. ..++|
T Consensus 212 vGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~---~dp~dL-~~al~~l~~~~~~D 287 (407)
T PRK12726 212 IGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA---TSPAEL-EEAVQYMTYVNCVD 287 (407)
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec---CCHHHH-HHHHHHHHhcCCCC
Confidence 99999999999999999888888899999999999999999999999999998743 345554 55565554 35689
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccccc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 579 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~ 579 (621)
+++|||+|+.+.+..++..|..+.....|+.++||..|+ ....+.. +++.. +...+++++|+||+|++ .
T Consensus 288 ~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~----~i~~~----f~~l~i~glI~TKLDET-~ 356 (407)
T PRK12726 288 HILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVM----TILPK----LAEIPIDGFIITKMDET-T 356 (407)
T ss_pred EEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHH----HHHHh----cCcCCCCEEEEEcccCC-C
Confidence 999999999999999999999988888999988887763 3333322 22222 34568999999999998 7
Q ss_pred chhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 580 KVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 580 ~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
++|.++|+++.+|+||+|+|+||+|| ||..++++.++++||.
T Consensus 357 ~~G~~Lsv~~~tglPIsylt~GQ~VpdDi~~a~~~~Lv~~ll~ 399 (407)
T PRK12726 357 RIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRWLAERFVG 399 (407)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCCcccCCCCHHHHHHHHhc
Confidence 99999999999999999999999999 7999999999999874
No 18
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=9.6e-33 Score=297.42 Aligned_cols=255 Identities=21% Similarity=0.303 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCc
Q 007024 336 EPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKP 415 (621)
Q Consensus 336 ~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep 415 (621)
.+.++.+++.|++.||+++++++|++.+...+....... ...++..+.+.|.+.+...... .....|
T Consensus 108 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~----~~~v~~~l~~~l~~~i~~~~~~---------~~~~~~ 174 (388)
T PRK12723 108 HPTILKIEDILRENDFSESYIKDINEFIKKEFSLSDLDD----YDKVRDSVIIYIAKTIKCSGSI---------IDNLKK 174 (388)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcCC----HHHHHHHHHHHHHHHhhccCcc---------ccCCCC
Confidence 467899999999999999999999999987754332222 2345555555565555321110 112346
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhh----cCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~----~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~ 491 (621)
.+++|+|||||||||++++||.++.. .+.+|.++++|+||+|+++|+++|++++++|+.... ....+ ..++.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~---~~~~l-~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE---SFKDL-KEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC---cHHHH-HHHHH
Confidence 69999999999999999999988763 467999999999999999999999999999986432 22222 33333
Q ss_pred HHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCc-EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 492 EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 492 ~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd-lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
. ..++|++++||+|+++.+...+..|.+++....|+ .++||..++++..... +.+..+ ...+++++|
T Consensus 251 ~--~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~------~~~~~~----~~~~~~~~I 318 (388)
T PRK12723 251 Q--SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK------EIFHQF----SPFSYKTVI 318 (388)
T ss_pred H--hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH------HHHHHh----cCCCCCEEE
Confidence 3 36789999999999998776667777777765544 6778899998843322 333333 345899999
Q ss_pred eccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhh
Q 007024 571 LTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 620 (621)
Q Consensus 571 lTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 620 (621)
+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.|+++.+++.||
T Consensus 319 ~TKlDet-~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~ 368 (388)
T PRK12723 319 FTKLDET-TCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKIN 368 (388)
T ss_pred EEeccCC-CcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhc
Confidence 9999998 899999999999999999999999997 999999999999987
No 19
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=9.5e-33 Score=297.18 Aligned_cols=266 Identities=21% Similarity=0.300 Sum_probs=209.5
Q ss_pred CcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccc
Q 007024 327 KANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDV 406 (621)
Q Consensus 327 ~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dI 406 (621)
..+++++++.+.++.+++.|++.||+++++++|++.+...+.+.....+ ..+...+.+.|...+.... +.+..
T Consensus 145 ~~~i~~~~~~~~~~~L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~~~----~~~~~~l~~~L~~~l~~~~--~~~~~- 217 (432)
T PRK12724 145 ETTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRN----HNVTERAVTYLEERVSVDS--DLFSG- 217 (432)
T ss_pred cccccHhhhhhHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhccccccch----HHHHHHHHHHHHHhcccch--hhhhh-
Confidence 5578999999999999999999999999999999999887765444332 2344556666666664221 11111
Q ss_pred ccccccCCceEEEEEecCCCCHHHHHHHHHHhH-hhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHH
Q 007024 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIV 485 (621)
Q Consensus 407 s~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~i 485 (621)
...+++.+++|+||+||||||++.+||..+ ...+.+|.+.++|+||+++++|++.+++.++++++... .
T Consensus 218 ---~g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~-------~ 287 (432)
T PRK12724 218 ---TGKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK-------D 287 (432)
T ss_pred ---cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH-------H
Confidence 001234599999999999999999999755 55677999999999999999999999999999885321 1
Q ss_pred HHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcC---CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC
Q 007024 486 AKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLN---NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (621)
Q Consensus 486 a~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~---~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (621)
+..+...+...++|+++|||+|+++++...+..|.+++... .|..++||.+++.+.+...+ ++..+ .
T Consensus 288 ~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~------~~~~f----~ 357 (432)
T PRK12724 288 IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT------VLKAY----E 357 (432)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH------HHHHh----c
Confidence 22333344446789999999999998889999998887754 35577888999998754432 22222 3
Q ss_pred CCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhh
Q 007024 563 PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 620 (621)
Q Consensus 563 ~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 620 (621)
..+++++|+||+|++ .++|.++++++.+++||+|+|+||+|| ||..++++.+++.++
T Consensus 358 ~~~~~glIlTKLDEt-~~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~~l~~~i~ 415 (432)
T PRK12724 358 SLNYRRILLTKLDEA-DFLGSFLELADTYSKSFTYLSVGQEVPFDILNATKNLMAECVV 415 (432)
T ss_pred CCCCCEEEEEcccCC-CCccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHHHHHHHhc
Confidence 568999999999998 899999999999999999999999999 999999999999875
No 20
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=100.00 E-value=1e-32 Score=293.29 Aligned_cols=190 Identities=35% Similarity=0.506 Sum_probs=160.6
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh--hcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
+++ +++||||+||||||||+|||+.+. ....+|.|++.|+|||||+||+++|+++|++|+.... ++.+.. ++
T Consensus 202 ~~~--vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~---~~~el~-~a 275 (407)
T COG1419 202 QKR--VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY---SPKELA-EA 275 (407)
T ss_pred cCc--EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEec---CHHHHH-HH
Confidence 455 999999999999999999998776 5677999999999999999999999999999997542 333332 33
Q ss_pred HHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+.. +.++|++|+||+|+.+.+......|..++....+..+.||..+|+- .+.+.+++..+ +.++++++
T Consensus 276 i~~--l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K------~~dlkei~~~f----~~~~i~~~ 343 (407)
T COG1419 276 IEA--LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK------YEDLKEIIKQF----SLFPIDGL 343 (407)
T ss_pred HHH--hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc------hHHHHHHHHHh----ccCCccee
Confidence 332 4578999999999999999999999999988877777777777653 22334455444 45799999
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhh
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 620 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 620 (621)
|+||+||+ ..+|.++|+++++++||+|+++||+|| ||..++++++|+.++
T Consensus 344 I~TKlDET-~s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~ 394 (407)
T COG1419 344 IFTKLDET-TSLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRIL 394 (407)
T ss_pred EEEccccc-CchhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHh
Confidence 99999998 899999999999999999999999999 999999999999876
No 21
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=100.00 E-value=1.4e-31 Score=286.39 Aligned_cols=264 Identities=22% Similarity=0.319 Sum_probs=201.7
Q ss_pred ccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccc
Q 007024 329 NLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHA 408 (621)
Q Consensus 329 ~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~ 408 (621)
|.....-.|....+.++|++.||++.++++|++.+..... ..+ . ......+...|.. .+.+++..++
T Consensus 66 w~~~~~~~p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~---~~~---~-~~~~~~~~~~l~~------~l~~~~~~~~ 132 (374)
T PRK14722 66 WNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEG---YDT---L-DAAADWAQSVLAA------NLPVLDSEDA 132 (374)
T ss_pred hcchhccCcHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcc---cCC---H-HHHHHHHHHHHHh------cchhhcCCCc
Confidence 3333445577789999999999999999999998865321 011 1 1222223333322 2344555666
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-C-cEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHH
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~-GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia 486 (621)
.+..|+ +++|+||||||||||+++|++.+... + .+|.++++|+||+|+++|+++|++.+++++.......+...
T Consensus 133 ~~~~g~--ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~-- 208 (374)
T PRK14722 133 LMERGG--VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL-- 208 (374)
T ss_pred cccCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH--
Confidence 667787 99999999999999999999876543 4 48999999999999999999999999999876544444322
Q ss_pred HHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-C---
Q 007024 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-N--- 562 (621)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~--- 562 (621)
++. ...++|+++|||+|+.+.+..++..+..+.....|...+||..++++.+...+ .+..+.... .
T Consensus 209 --~l~--~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e------vi~~f~~~~~~p~~ 278 (374)
T PRK14722 209 --ALA--ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE------VVQAYRSAAGQPKA 278 (374)
T ss_pred --HHH--HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH------HHHHHHHhhccccc
Confidence 222 34678999999999999888888888877666778788888999998877653 222222211 1
Q ss_pred -CCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhh
Q 007024 563 -PQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 620 (621)
Q Consensus 563 -~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 620 (621)
...++++|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.++++.+|+++|
T Consensus 279 ~~~~~~~~I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VPedl~~a~~~~l~~~~~ 337 (374)
T PRK14722 279 ALPDLAGCILTKLDEA-SNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLKSAF 337 (374)
T ss_pred ccCCCCEEEEeccccC-CCccHHHHHHHHHCcCeEEEecCCCCCcccccCCHHHHHHHHh
Confidence 125899999999998 799999999999999999999999999 899999999999886
No 22
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.97 E-value=4e-31 Score=286.74 Aligned_cols=254 Identities=24% Similarity=0.292 Sum_probs=194.0
Q ss_pred ccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc
Q 007024 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (621)
Q Consensus 332 ~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~ 411 (621)
.....|....+.++|++.||+++++.+|++.+...... ......++..|.+.|..+..+ ++ +.
T Consensus 127 ~~~~~p~~~~~~~~L~~~~v~~~la~~l~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~----~~-------~~ 189 (420)
T PRK14721 127 FSQRDPGGMKVLRTLLSAGFSPLLSRHLLEKLPADRDF------EQSLKKTISLLTLNLRTIGGD----EI-------IE 189 (420)
T ss_pred ccccCcHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHhcCCc----cc-------cC
Confidence 34455667889999999999999999999998765321 112233444444444321110 11 23
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhh-c-CcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-H-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~-~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
.|+ +++||||||||||||+++||+.+.. . ..+|.++.+|+||+|+++|+..+++.+++++.... +..+.. .+
T Consensus 190 ~g~--vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~---~~~dl~-~a 263 (420)
T PRK14721 190 QGG--VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIK---DIADLQ-LM 263 (420)
T ss_pred CCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCC---CHHHHH-HH
Confidence 566 9999999999999999999986543 2 34789999999999999999999999999986432 222221 22
Q ss_pred HHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
.....+++.++|||+|+.+++..++..|..+.....|..++||..++++.+... +++..+ ...+++++
T Consensus 264 --l~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~------~~~~~f----~~~~~~~~ 331 (420)
T PRK14721 264 --LHELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD------EVISAY----QGHGIHGC 331 (420)
T ss_pred --HHHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH------HHHHHh----cCCCCCEE
Confidence 234567899999999999988889999988766666777778788887654332 333333 35689999
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
|+||+|++ .++|.++++++.+++||.|+|+||+|| ||+.++++.+|++||+
T Consensus 332 I~TKlDEt-~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 332 IITKVDEA-ASLGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred EEEeeeCC-CCccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 99999998 799999999999999999999999997 9999999999999874
No 23
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=6.9e-31 Score=287.10 Aligned_cols=256 Identities=31% Similarity=0.438 Sum_probs=201.5
Q ss_pred CccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccc
Q 007024 331 DKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAK 410 (621)
Q Consensus 331 ~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i 410 (621)
.....+|.+..+++.|++.||+++++.+|++.+......... .+..++.+.|.+++..... + + +
T Consensus 155 ~~~~~~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~L~~~l~~~~~-~------~-~ 218 (424)
T PRK05703 155 QVERIPPEFAELYKRLKRSGLSPEIAEKLLKLLLEHMPPRER--------TAWRYLLELLANMIPVRVE-D------I-L 218 (424)
T ss_pred ccccchHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHhCcccc-c------c-c
Confidence 456788999999999999999999999999999776532110 3566778888887753221 1 1 2
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHh-h-cCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHH
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~-~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~ 488 (621)
..|+ +++|+||+||||||++.+||+.+. . .+.+|.++++|+||+|+++|++.|++.+++|++.... +... ..
T Consensus 219 ~~~~--~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~---~~~l-~~ 292 (424)
T PRK05703 219 KQGG--VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYD---PKEL-AK 292 (424)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCC---HHhH-HH
Confidence 3466 999999999999999999998876 3 4569999999999999999999999999999864322 2222 22
Q ss_pred HHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhh-cCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCce
Q 007024 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY-LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (621)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~-~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (621)
++.. ..++|+++|||+|+.+.+...+..|..++. ...|..++||..++.+.... .+++..+ ...+++
T Consensus 293 ~l~~--~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l------~~~~~~f----~~~~~~ 360 (424)
T PRK05703 293 ALEQ--LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDL------KDIYKHF----SRLPLD 360 (424)
T ss_pred HHHH--hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHH------HHHHHHh----CCCCCC
Confidence 3332 346899999999999888888888888777 44566667777777664322 2333333 345788
Q ss_pred EEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 568 GILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 568 ~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
++|+||+|++ ..+|.++++++.+++||.|+|+||+|| ||+.++++.++++||.
T Consensus 361 ~vI~TKlDet-~~~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 361 GLIFTKLDET-SSLGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred EEEEeccccc-ccccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhc
Confidence 9999999998 799999999999999999999999997 9999999999999874
No 24
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.97 E-value=3e-31 Score=273.51 Aligned_cols=258 Identities=22% Similarity=0.362 Sum_probs=199.2
Q ss_pred ccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc
Q 007024 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (621)
Q Consensus 332 ~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~ 411 (621)
.+++.+.+++++..|++.||+++++.++.+.....+.... +. ...+...+.+.+...+.+. .++ ..
T Consensus 8 ~~~~~~~~~~~~~~l~~~dv~~~~~~~l~~~~~i~f~~~~---~~--~~~vl~~v~~~l~~~~~~~---~~~------~~ 73 (270)
T PRK06731 8 QESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT---MI--TEEVIEYILEDMSSHFNTE---NVF------EK 73 (270)
T ss_pred hhcccHHHHHHHHHHHHcCCCHHHHHHHhhcceEEecCCC---cc--ccHHHHHHhcccEEeeCCc---ccc------cC
Confidence 4667778899999999999999999999986543322111 00 1111111111111111110 011 11
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~ 491 (621)
++. +++|+|+||+||||++.+|++.+...+.+|.++.+|.+|+++++|++.+++.++++++.. .++..+ .++++
T Consensus 74 ~~~--~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~---~~~~~l-~~~l~ 147 (270)
T PRK06731 74 EVQ--TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV---RDEAAM-TRALT 147 (270)
T ss_pred CCC--EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec---CCHHHH-HHHHH
Confidence 445 999999999999999999999988778899999999999999999999999999988643 244444 34555
Q ss_pred HHhh-cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC-CCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 492 EATR-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 492 ~~~~-~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~-GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
.+.. .++|++++||+|+.+++..++++|.+++...+|+.++||.+++. +.|...+++.| +..+++++
T Consensus 148 ~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f-----------~~~~~~~~ 216 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF-----------KDIHIDGI 216 (270)
T ss_pred HHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHh-----------CCCCCCEE
Confidence 5433 46899999999999999999999999998899999998888875 45666555444 24689999
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
|+||+|++ .++|.++++++.+++||+|+|+||+|| ||+.++++++++.||.
T Consensus 217 I~TKlDet-~~~G~~l~~~~~~~~Pi~~it~Gq~vp~di~~a~~~~l~~~~~~ 268 (270)
T PRK06731 217 VFTKFDET-ASSGELLKIPAVSSAPIVLMTDGQDVKKNIHIATAEHLAKQMLQ 268 (270)
T ss_pred EEEeecCC-CCccHHHHHHHHHCcCEEEEeCCCCCCcchhhCCHHHHHHHHhc
Confidence 99999998 799999999999999999999999999 9999999999999874
No 25
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.96 E-value=5.8e-28 Score=265.67 Aligned_cols=251 Identities=24% Similarity=0.294 Sum_probs=185.1
Q ss_pred ccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccc
Q 007024 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKE 411 (621)
Q Consensus 332 ~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~ 411 (621)
...-+|....+.++|++.||+++++.+|.+.+...... ......+.+.|.+.+. ....+. +.
T Consensus 287 ~~~~~P~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~----------~~~~~~l~~~L~~~l~-v~~~~~-------l~ 348 (559)
T PRK12727 287 RLRGSPVRAQALELMDDYGFDAGLTRDVAMQIPADTEL----------HRGRGLMLGLLSKRLP-VAPVDP-------LE 348 (559)
T ss_pred hhccChHHHHHHHHHHHCCCCHHHHHHHHHhhhcccch----------hhHHHHHHHHHHHhcC-cCcccc-------cc
Confidence 34456888899999999999999999999988653210 1122334455555552 222122 23
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhc--CcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~--~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
.|+ +++|+||+|+|||||+.+|+.++... +++|.++++|+||+|+.+|++.+++.+++++.... +... ...+
T Consensus 349 ~G~--vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~---d~~~-L~~a 422 (559)
T PRK12727 349 RGG--VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD---SAES-LLDL 422 (559)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC---cHHH-HHHH
Confidence 567 99999999999999999999876544 46899999999999999999999999999886432 2222 2333
Q ss_pred HHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+.. ..++|+++|||+|+++.+..++..|..+........+|+|+-.+...|.. +.++.+.. ..++++
T Consensus 423 L~~--l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-------eii~~f~~----~~~~gv 489 (559)
T PRK12727 423 LER--LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-------EVVRRFAH----AKPQGV 489 (559)
T ss_pred HHH--hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-------HHHHHHHh----hCCeEE
Confidence 433 34689999999999988877777776554444444444434333333433 23333322 367899
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhh
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLL 620 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll 620 (621)
|+||+|+. .++|.++++++.+++||.|+|+||+|| ||+.++++.+|++|.
T Consensus 490 ILTKlDEt-~~lG~aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~ 540 (559)
T PRK12727 490 VLTKLDET-GRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLE 540 (559)
T ss_pred EEecCcCc-cchhHHHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHH
Confidence 99999997 799999999999999999999999997 999999999999875
No 26
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=226.26 Aligned_cols=184 Identities=24% Similarity=0.271 Sum_probs=147.7
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~ 467 (621)
....+|++|++++.+|+ +++||||+||||||+|+||.++..+++|+|.+.|.++. ++|.|+|...+..
T Consensus 13 g~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 13 GDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 35679999999999999 99999999999999999999999999999999996552 4999999876655
Q ss_pred hcc----c---ceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 RLQ----V---PIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ~L~----v---~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+. + |....+..+ ++.+.+.+.++..++.+ .+..+..+|||+|||++|||+|+ .+|+++|| ||||
T Consensus 91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALa-----M~P~vmLF-DEPT 164 (240)
T COG1126 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MDPKVMLF-DEPT 164 (240)
T ss_pred cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHc-----CCCCEEee-cCCc
Confidence 552 2 222223222 23345555666655544 37889999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|||....+.+ +.+.++++. +.|.+++| +..|.+-.++. .|+|+-.|..+
T Consensus 165 SALDPElv~EVL-~vm~~LA~e----GmTMivVT------HEM~FAr~Vad----rviFmd~G~ii 215 (240)
T COG1126 165 SALDPELVGEVL-DVMKDLAEE----GMTMIIVT------HEMGFAREVAD----RVIFMDQGKII 215 (240)
T ss_pred ccCCHHHHHHHH-HHHHHHHHc----CCeEEEEe------chhHHHHHhhh----eEEEeeCCEEE
Confidence 999999865444 788888865 68889988 46777777777 99999999655
No 27
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.6e-24 Score=217.76 Aligned_cols=181 Identities=23% Similarity=0.268 Sum_probs=143.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhh------hhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLR------THARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~------~~~~~L 469 (621)
..+|+||+|++.+|+ +++||||+||||||||+.|||+..|++|+|.+.|... -++|+++|.. +..+|.
T Consensus 16 ~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhh
Confidence 679999999999999 9999999999999999999999999999999999764 3589999965 445555
Q ss_pred ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 470 QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 470 ~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.+++...+..+ ...+.+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| |||+++||+..+.
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~-----~~P~lLLl-DEPFgALDalTR~ 167 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALA-----TRPKLLLL-DEPFGALDALTRE 167 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHh-----cCCCEEEE-cCCcchhhHHHHH
Confidence 55554433222 234567788888888877 7889999999999999999999 99999999 9999999999875
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq 602 (621)
.+++.+.++-+. ...|++++|. .+-.++.++. .|+.++++.
T Consensus 168 -~lq~~l~~lw~~---~~~TvllVTH------di~EAv~Lsd----Rivvl~~~P 208 (248)
T COG1116 168 -ELQDELLRLWEE---TRKTVLLVTH------DVDEAVYLAD----RVVVLSNRP 208 (248)
T ss_pred -HHHHHHHHHHHh---hCCEEEEEeC------CHHHHHhhhC----EEEEecCCC
Confidence 444555555433 3578888885 3444554544 888888863
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=2e-24 Score=220.12 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=145.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L 469 (621)
...+|+++||++++|+ +++|+|||||||||||++|+|+++|.+|+|.+.|.++. ++|+++|.......+
T Consensus 14 ~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 14 GKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred CeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 4678999999999999 99999999999999999999999999999999999884 599999987544433
Q ss_pred cc---------c---eeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 470 QV---------P---IFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 470 ~v---------~---l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
-| | ++. .......+.+.++++.++...+ +..+-++|||++|++.||++|+ .+|+++|| ||
T Consensus 92 tV~d~V~~GR~p~~~~~~-~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALa-----Q~~~iLLL-DE 164 (258)
T COG1120 92 TVYELVLLGRYPHLGLFG-RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALA-----QETPILLL-DE 164 (258)
T ss_pred EEeehHhhcCCccccccc-CCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHh-----cCCCEEEe-CC
Confidence 21 1 111 1223334467778887777666 5667788999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||+.||...|.+.+ +.++++.+. .++++|+++. | ++.+..+.--++.+-.|+-+.
T Consensus 165 PTs~LDi~~Q~evl-~ll~~l~~~---~~~tvv~vlH-D---------lN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 165 PTSHLDIAHQIEVL-ELLRDLNRE---KGLTVVMVLH-D---------LNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred CccccCHHHHHHHH-HHHHHHHHh---cCCEEEEEec-C---------HHHHHHhCCEEEEEECCeEEe
Confidence 99999999998666 677777643 3677776654 3 245666677888888888774
No 29
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.6e-24 Score=219.93 Aligned_cols=160 Identities=24% Similarity=0.325 Sum_probs=129.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------ceeeeeehhhhhhhhc-----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRL----- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------~RigaveQl~~~~~~L----- 469 (621)
.+|+||+|++.+|+ +++|+||||+|||||++.|+|+++|..|+|.+.+..+ -|||||+|...+-..+
T Consensus 18 ~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 59999999999999 9999999999999999999999999999999998754 4799999965332222
Q ss_pred ---ccceee-----cCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 470 ---QVPIFE-----KGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 470 ---~v~l~~-----~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
.+..+. ..+.+.....+.++++.+++.++ +..+..+|||++||+.|||||+ .+|++++| |||++|
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~-----~~p~lllL-DEP~~g 169 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA-----QNPDLLLL-DEPFTG 169 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc-----cCCCEEEe-cCCccc
Confidence 111111 11222335677888888888777 7888899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|+..+. .|.+.|..+.+. +.+++++|.
T Consensus 170 vD~~~~~-~i~~lL~~l~~e----g~tIl~vtH 197 (254)
T COG1121 170 VDVAGQK-EIYDLLKELRQE----GKTVLMVTH 197 (254)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 9999874 555888888754 677888775
No 30
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.8e-24 Score=215.12 Aligned_cols=180 Identities=23% Similarity=0.226 Sum_probs=137.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ce---eeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FR---SGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~R---igaveQl~~~~ 466 (621)
+.+|++|+|++++|+ +++|+||+||||||||++|+++..|++|.|.+.+.|+ || +|+++|...+.
T Consensus 18 ~~~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 679999999999999 9999999999999999999999999999999999876 33 99999987554
Q ss_pred hhc------ccceeecCCCC-CHHHHHHHHHHHHhhcC-CC-ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 467 RRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 467 ~~L------~v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d-~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
..+ .+|+...+... .....+...++.+++.+ .. ..+..+|||+|||+++||||+ ++|++||. |||
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~-----~~P~iilA-DEP 169 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI-----NNPKIILA-DEP 169 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh-----cCCCeEEe-eCc
Confidence 444 44443332222 22333444444434432 23 667899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq 602 (621)
|.+||..... .+.+.+..+.+. .+.++|++|. |.. +....-.++++-+|+
T Consensus 170 TgnLD~~t~~-~V~~ll~~~~~~---~g~tii~VTH-d~~----------lA~~~dr~i~l~dG~ 219 (226)
T COG1136 170 TGNLDSKTAK-EVLELLRELNKE---RGKTIIMVTH-DPE----------LAKYADRVIELKDGK 219 (226)
T ss_pred cccCChHHHH-HHHHHHHHHHHh---cCCEEEEEcC-CHH----------HHHhCCEEEEEeCCe
Confidence 9999998864 344666666543 4788999997 322 334556888998887
No 31
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=1.6e-24 Score=215.67 Aligned_cols=187 Identities=20% Similarity=0.267 Sum_probs=144.1
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------------ceeeeeehhh
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR 463 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------------~RigaveQl~ 463 (621)
......|+++|+|.+.+|+ +++|+||+|+||||+|+.|.|+++|+.|+|.+.|.|+ .|+|.++|.-
T Consensus 17 ~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g 94 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG 94 (263)
T ss_pred ecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence 3455679999999999999 9999999999999999999999999999999999987 2589999976
Q ss_pred h------hhhhcccceeecCCCCC--HHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 T------HARRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~------~~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
. ..+|..+|+++...-+. ..+++..-++..++.+ .+..+.++||||++|++|||||+ .+|+++++
T Consensus 95 ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia-----ldPell~~ 169 (263)
T COG1127 95 ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA-----LDPELLFL 169 (263)
T ss_pred ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh-----cCCCEEEe
Confidence 4 45555566654322111 1233333344444433 36788999999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+||||+.. ..|.+.++.+.+. .+.|.+++|. | +-.+.+++. .|.++.+|.-+
T Consensus 170 -DEPtsGLDPI~a-~~~~~LI~~L~~~---lg~T~i~VTH-D-----l~s~~~i~D----rv~~L~~gkv~ 225 (263)
T COG1127 170 -DEPTSGLDPISA-GVIDELIRELNDA---LGLTVIMVTH-D-----LDSLLTIAD----RVAVLADGKVI 225 (263)
T ss_pred -cCCCCCCCcchH-HHHHHHHHHHHHh---hCCEEEEEEC-C-----hHHHHhhhc----eEEEEeCCEEE
Confidence 999999999974 6888888888764 5889999986 2 223444444 67777777654
No 32
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=8.3e-25 Score=228.97 Aligned_cols=154 Identities=21% Similarity=0.260 Sum_probs=129.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhc-
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL- 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L- 469 (621)
...+|++|||.+++|+ +++|+||||||||||+++|+|++.|++|+|.+.|.|.. ++|++.|...+...+
T Consensus 17 ~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 4679999999999999 99999999999999999999999999999999998864 499999998777776
Q ss_pred ---ccceeecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 ---QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 ---~v~l~~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
.+.++...|+.. ....+.++++.+.+... +..+-.+|+||+||+.||.+|. .+|+++|| ||||+|||
T Consensus 95 ~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~-----~~P~lliL-DEPt~GLD 168 (293)
T COG1131 95 VRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL-----HDPELLIL-DEPTSGLD 168 (293)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCcCCC
Confidence 344555555443 23456677777666543 4567789999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCC
Q 007024 543 AVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~ 561 (621)
+... ..|.+.|+.++..+
T Consensus 169 p~~~-~~~~~~l~~l~~~g 186 (293)
T COG1131 169 PESR-REIWELLRELAKEG 186 (293)
T ss_pred HHHH-HHHHHHHHHHHhCC
Confidence 9986 57779999998765
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.5e-24 Score=207.25 Aligned_cols=172 Identities=21% Similarity=0.296 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce--------eeeeehhhhhhhhc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--------SGAVEQLRTHARRL-- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R--------igaveQl~~~~~~L-- 469 (621)
+.+++||||++++|+ |++|+||||+||||+|++|+.++.|++|+|.++++|+-| ||.++--..++.+|
T Consensus 15 v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~ 92 (245)
T COG4555 15 VQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTA 92 (245)
T ss_pred HhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhH
Confidence 458899999999999 999999999999999999999999999999999999832 66655333333333
Q ss_pred --ccceeecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 470 --QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 470 --~v~l~~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
++.+|..-++.. ......+..+.+.+..+ |.....+|.||+|++.+||+|. ++|++++| |||++|||.
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv-----h~P~i~vl-DEP~sGLDi 166 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV-----HDPSILVL-DEPTSGLDI 166 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh-----cCCCeEEE-cCCCCCccH
Confidence 344444333322 22333344444444444 6788899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDK 580 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~ 580 (621)
... ..|++.+..+...++.+..+.|++..+..+||+
T Consensus 167 ~~~-r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 167 RTR-RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred HHH-HHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 875 688899988887766666666666665555443
No 34
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=6.4e-24 Score=225.08 Aligned_cols=198 Identities=19% Similarity=0.207 Sum_probs=152.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc-
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~- 470 (621)
...+|+|||+.+.+|+ +++|+||+||||||+|++|||+..|++|+|.|.|.|+. .+|.|+|...+..+|.
T Consensus 17 ~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV 94 (352)
T COG3842 17 DFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTV 94 (352)
T ss_pred CeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcH
Confidence 5778999999999999 99999999999999999999999999999999999984 3999999876665553
Q ss_pred -----cceeecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 471 -----VPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 471 -----v~l~~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
.++.. ..... ....+.++++.+.+.++ +..+..+|||+|||++|||+|+ .+|+++|| |||+++|
T Consensus 95 ~~NVafGLk~-~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~-----~~P~vLLL-DEPlSaL 167 (352)
T COG3842 95 EENVAFGLKV-RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV-----PEPKVLLL-DEPLSAL 167 (352)
T ss_pred HHHhhhhhhh-cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh-----cCcchhhh-cCcccch
Confidence 23321 11122 23466777777777666 6888999999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC----C-cccCCCHHHHH
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY----T-DLKKLNVKSIV 616 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v----~-DL~~~~~~~~v 616 (621)
|..-+ ..+...++.+.. ..+++.|++|+ .-..++.|+. .|..+..|+.. | +|-.-....+|
T Consensus 168 D~kLR-~~mr~Elk~lq~---~~giT~i~VTH------DqeEAl~msD----rI~Vm~~G~I~Q~gtP~eiY~~P~~~fV 233 (352)
T COG3842 168 DAKLR-EQMRKELKELQR---ELGITFVYVTH------DQEEALAMSD----RIAVMNDGRIEQVGTPEEIYERPATRFV 233 (352)
T ss_pred hHHHH-HHHHHHHHHHHH---hcCCeEEEEEC------CHHHHhhhcc----ceEEccCCceeecCCHHHHhhCcchHHH
Confidence 98765 455556666554 45999999996 3446666665 67777777653 2 45555555555
Q ss_pred HHh
Q 007024 617 KTL 619 (621)
Q Consensus 617 ~~L 619 (621)
..+
T Consensus 234 A~F 236 (352)
T COG3842 234 ADF 236 (352)
T ss_pred HHH
Confidence 443
No 35
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.8e-23 Score=220.68 Aligned_cols=180 Identities=21% Similarity=0.239 Sum_probs=137.8
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ceeeeeehhhhhhhh------
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARR------ 468 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~RigaveQl~~~~~~------ 468 (621)
+|+++++++++|+ +++|+|||||||||||++|||+..|++|+|.|.+.|. ..+|+|+|...++..
T Consensus 18 ~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 8999999999999 9999999999999999999999999999999999987 359999998755444
Q ss_pred cccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 469 LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 469 L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+..++...+..+ +....+.++.+.+...++ +..+-.+|||++||++++|+|. .+|+++|| |||+++||+.-+
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV-----r~P~v~L~-DEPlSnLDa~lR 169 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV-----RKPKVFLL-DEPLSNLDAKLR 169 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh-----cCCCEEEe-cCchhHhhHHHH
Confidence 444443332222 223445556665555554 7888999999999999999999 99999998 999999999876
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
. .+...+..+.+ ..++|.|++|+ |.+ .+.+| +-.|+.+-.|.-
T Consensus 170 ~-~mr~ei~~lh~---~l~~T~IYVTH-Dq~-----EAmtl----adri~Vm~~G~i 212 (338)
T COG3839 170 V-LMRSEIKKLHE---RLGTTTIYVTH-DQV-----EAMTL----ADRIVVMNDGRI 212 (338)
T ss_pred H-HHHHHHHHHHH---hcCCcEEEEcC-CHH-----HHHhh----CCEEEEEeCCee
Confidence 3 44455555543 45789999997 444 33333 346666666654
No 36
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.89 E-value=7.7e-23 Score=197.12 Aligned_cols=184 Identities=19% Similarity=0.160 Sum_probs=148.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------------ceeeeeehhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR---- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------------~RigaveQl~---- 463 (621)
..+|+||||++++|+ ++.|+||+||||||+|+.|++..+|+.|+|.++++|+ .+||.|+|..
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999 9999999999999999999999999999999999997 2599999975
Q ss_pred --hhhhhcccceeecCCCCCH-HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 464 --THARRLQVPIFEKGYEKDP-AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 464 --~~~~~L~v~l~~~~~~~d~-~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
+.+++..+|+...++.... ...+.++++..++.+. ...+..+|||+|||++||||+. ++|.++|. ||||-
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-----~~P~vLlA-DEPTG 166 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-----NQPAVLLA-DEPTG 166 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-----cCCCeEee-cCCCC
Confidence 5566666677655554332 3445566666665543 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~D 606 (621)
+||+....+.+ +.+..+. ..+.+++|.|. |. .++.....|++-+..|.-+.|
T Consensus 167 NLDp~~s~~im-~lfeein----r~GtTVl~ATH-d~---------~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 167 NLDPDLSWEIM-RLFEEIN----RLGTTVLMATH-DL---------ELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred CCChHHHHHHH-HHHHHHh----hcCcEEEEEec-cH---------HHHHhccCcEEEEeCCEEEec
Confidence 99998765443 5555554 45788888886 32 346677889999999976654
No 37
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.9e-23 Score=214.54 Aligned_cols=185 Identities=22% Similarity=0.212 Sum_probs=146.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------------ceeeeeehhh---
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR--- 463 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------------~RigaveQl~--- 463 (621)
.+.+|+|||+++++|+ +++|||.+|||||||+++|.++-.|++|+|.++|.|+ .+||+++|..
T Consensus 18 ~~~al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4678999999999999 9999999999999999999999999999999999887 2499999975
Q ss_pred ---hhhhhcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 464 ---THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 464 ---~~~~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
+..+++..|+...+..+ +....+.+.++..++.+. +..+..+|||++||+.|||||+ ++|+++|+ ||||
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa-----~~P~iLL~-DEaT 169 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----NNPKILLC-DEAT 169 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh-----cCCCEEEe-cCcc
Confidence 55667777776555432 223445566666666554 7889999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
++|||......+ +.|.++. +..++|++++|.=-+ . +...+-.|..+..|+-+.
T Consensus 170 SALDP~TT~sIL-~LL~~In---~~lglTIvlITHEm~------V----vk~ic~rVavm~~G~lvE 222 (339)
T COG1135 170 SALDPETTQSIL-ELLKDIN---RELGLTIVLITHEME------V----VKRICDRVAVLDQGRLVE 222 (339)
T ss_pred ccCChHHHHHHH-HHHHHHH---HHcCCEEEEEechHH------H----HHHHhhhheEeeCCEEEE
Confidence 999998864333 5555554 457999999996222 2 334444788888887763
No 38
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=2.1e-23 Score=207.61 Aligned_cols=193 Identities=13% Similarity=0.191 Sum_probs=156.7
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----ceeeeeehhhhhhhhccc-
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQV- 471 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----~RigaveQl~~~~~~L~v- 471 (621)
....+++|+||.+++|+ +++|+||||||||||+++|.|++.|+.|+|.+.|.+. -||||.+..|-++..+-+
T Consensus 13 g~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~ 90 (300)
T COG4152 13 GDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVE 90 (300)
T ss_pred CceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHH
Confidence 45678999999999999 9999999999999999999999999999999999776 379999888877777633
Q ss_pred ---ceeecCCCCCHHHH---HHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 472 ---PIFEKGYEKDPAIV---AKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 472 ---~l~~~~~~~d~~~i---a~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
.++..-.+...+++ +...++.+...++ ...+-++|-|+||++.+..++. ++|+++|| |||++||||+
T Consensus 91 dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi-----HePeLlIL-DEPFSGLDPV 164 (300)
T COG4152 91 DQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI-----HEPELLIL-DEPFSGLDPV 164 (300)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh-----cCCCEEEe-cCCccCCChh
Confidence 23333333333333 3344454444444 3456678999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccch-----------hHHHHhHHHhCCcEEEEe
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKV-----------GAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~v-----------G~~ls~~~~~g~PI~fvg 599 (621)
+. +.+.+++.++...+.++..+.|.++++.+.||++ |.+-.+...+|...+|+-
T Consensus 165 N~-elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gkk~~~ie 229 (300)
T COG4152 165 NV-ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIE 229 (300)
T ss_pred hH-HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcCCceEEEe
Confidence 96 6888899999998888888888889999988876 667777787888888776
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=6.6e-23 Score=205.31 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=147.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L 469 (621)
...+++++||++++|+ +++|+||+||||||+|++|.+++.|++|+|.|++.|+ .+||||-|-.-+..++
T Consensus 13 ~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 13 NKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred CceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 4678999999999999 9999999999999999999999999999999999987 3599998865444433
Q ss_pred ------c-cceeecCCCC-CHHHHHHHHHHHHhhcC--C-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 470 ------Q-VPIFEKGYEK-DPAIVAKEAIQEATRNG--S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 470 ------~-v~l~~~~~~~-d~~~ia~~al~~~~~~~--~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
. ||-. .++.+ .....+.+.+..+.+.. | +..+..+|||+|||+.++|||+ .+|+++|+ |||+
T Consensus 91 Tv~eNIa~VP~L-~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA-----adP~ilLM-DEPF 163 (309)
T COG1125 91 TVAENIATVPKL-LGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA-----ADPPILLM-DEPF 163 (309)
T ss_pred cHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh-----cCCCeEee-cCCc
Confidence 2 2221 12222 22344555566555532 3 6889999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCC----C-cccCCCH
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY----T-DLKKLNV 612 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v----~-DL~~~~~ 612 (621)
.++|++.+. .+.+.+..+.+ ..+.|++++|. +|| ++ ..+-.|..+-.|.-+ | +|-.-.+
T Consensus 164 gALDpI~R~-~lQ~e~~~lq~---~l~kTivfVTHDidE-------A~----kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 164 GALDPITRK-QLQEEIKELQK---ELGKTIVFVTHDIDE-------AL----KLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred cccChhhHH-HHHHHHHHHHH---HhCCEEEEEecCHHH-------HH----hhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 999999874 44455555543 45788888886 444 33 334477777777765 3 4656666
Q ss_pred HHHHHHhh
Q 007024 613 KSIVKTLL 620 (621)
Q Consensus 613 ~~~v~~Ll 620 (621)
..||..++
T Consensus 229 n~FV~~f~ 236 (309)
T COG1125 229 NDFVEDFF 236 (309)
T ss_pred HHHHHHHh
Confidence 77777664
No 40
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=4.3e-23 Score=217.33 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=123.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++. ++|+++|...+...+.
T Consensus 20 ~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 20 KLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred eEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 468999999999999 99999999999999999999999999999999998852 4999999865544331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++... ...+.++++.+.+.. .+..+..+||||+|++.||++|. .+|+++|| ||||+|||+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~-----~~P~lllL-DEPt~gLD~ 171 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV-----NDPDVLVL-DEPTTGLDP 171 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCCcCCCH
Confidence 222222233222 233445555554433 35677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+. .|.+.+..+.+. +.+++++|.
T Consensus 172 ~~~~-~l~~~l~~l~~~----g~till~sH 196 (306)
T PRK13537 172 QARH-LMWERLRSLLAR----GKTILLTTH 196 (306)
T ss_pred HHHH-HHHHHHHHHHhC----CCEEEEECC
Confidence 9874 566788887643 455666554
No 41
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=205.87 Aligned_cols=182 Identities=19% Similarity=0.205 Sum_probs=143.7
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc---cc-------ceeeeeehhhhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC---DT-------FRSGAVEQLRTHARR 468 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~---Dt-------~RigaveQl~~~~~~ 468 (621)
...+++||++.++.|+ .++|+|||||||||+|++|||++.|+.|+|.+.+. |. .|+|+++|...+...
T Consensus 14 ~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4567889999999999 99999999999999999999999999999999998 76 369999998766555
Q ss_pred cc----cceee--cCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 469 LQ----VPIFE--KGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 469 L~----v~l~~--~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
|. |.|-. .....+ ....+.+.++.+.+.++ +..+.++|||++||++|||+|+ .+|.++|| |||+
T Consensus 92 mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA-----~eP~vLLL-DEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA-----VEPKVLLL-DEPF 165 (345)
T ss_pred chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh-----cCCCeEee-cCCc
Confidence 52 22211 111122 22445556777777776 7889999999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq 602 (621)
.+||+... +.+.+-|+.+.+. .+++.+++|. |.. . +++..-.|+.+.+|.
T Consensus 166 ~ALDa~vr-~~lr~wLr~~~~~---~~~ttvfVTH-D~e-----e----a~~ladrvvvl~~G~ 215 (345)
T COG1118 166 GALDAKVR-KELRRWLRKLHDR---LGVTTVFVTH-DQE-----E----ALELADRVVVLNQGR 215 (345)
T ss_pred hhhhHHHH-HHHHHHHHHHHHh---hCceEEEEeC-CHH-----H----HHhhcceEEEecCCe
Confidence 99999764 6777777777654 4788888886 332 1 556666899999995
No 42
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.6e-22 Score=198.79 Aligned_cols=183 Identities=20% Similarity=0.195 Sum_probs=142.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ce-eeeeehhh-------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FR-SGAVEQLR------- 463 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~R-igaveQl~------- 463 (621)
.+|++|||++.+|+ +++|+|++||||||+.+.|+|+.+|+.|+|.+.|... || +.+|+|..
T Consensus 21 ~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 58999999999999 9999999999999999999999999999999999543 23 78889975
Q ss_pred -hhhhhcccceeecCCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 464 -THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 464 -~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+..+.+.-|+...+..+. ...+.++++.+++.. ++..+..+|||++||++|||||. .+|+++|+ ||||++
T Consensus 99 ~tv~~~l~Epl~~~~~~~~-~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~-----~~PklLIl-DEptSa 171 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKS-QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI-----PEPKLLIL-DEPTSA 171 (252)
T ss_pred hhHHHHHhhhhccCCccHH-HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc-----cCCCEEEe-cCchhh
Confidence 334444445544333322 223555666554432 36788899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCc
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~D 606 (621)
||+..|++.+ ..|.++.+ .++++.+++|. ..+.+..|+. .|..+=+|+.+++
T Consensus 172 LD~siQa~Il-nlL~~l~~---~~~lt~l~IsH------dl~~v~~~cd----Ri~Vm~~G~ivE~ 223 (252)
T COG1124 172 LDVSVQAQIL-NLLLELKK---ERGLTYLFISH------DLALVEHMCD----RIAVMDNGQIVEI 223 (252)
T ss_pred hcHHHHHHHH-HHHHHHHH---hcCceEEEEeC------cHHHHHHHhh----heeeeeCCeEEEe
Confidence 9999998666 45666654 45888999874 4455555555 8888999998853
No 43
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=7.9e-23 Score=218.22 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------ceeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------~RigaveQl~~~~~~L~- 470 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++ .++|+++|...+...+.
T Consensus 54 ~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 131 (340)
T PRK13536 54 KAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131 (340)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcH
Confidence 468999999999999 9999999999999999999999999999999999875 24899998765433331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++... ...+.++++.+.+.. .+..+.++||||+|++.||++|+ .+|+++|| ||||+|||+
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~-----~~P~lLiL-DEPt~gLD~ 205 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI-----NDPQLLIL-DEPTTGLDP 205 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCH
Confidence 122222222222 223344555554443 36677899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+ ..|.+.+..+... +.+++++|.
T Consensus 206 ~~r-~~l~~~l~~l~~~----g~tilisSH 230 (340)
T PRK13536 206 HAR-HLIWERLRSLLAR----GKTILLTTH 230 (340)
T ss_pred HHH-HHHHHHHHHHHhC----CCEEEEECC
Confidence 987 4666888877643 455666554
No 44
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=6.1e-22 Score=194.10 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=121.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEcccccc-----------eeeeeehh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQL 462 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt~-----------RigaveQl 462 (621)
...+|++|++.+++++ |++|+||+||||||+|++|..+.... .|+|.+.|.|+| |+|.|+|-
T Consensus 19 ~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQk 96 (253)
T COG1117 19 DKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQK 96 (253)
T ss_pred chhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccC
Confidence 4578999999999999 99999999999999999999876543 499999999885 59999997
Q ss_pred hhh-----hhhcccceeecCCC-CCHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 463 RTH-----ARRLQVPIFEKGYE-KDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 463 ~~~-----~~~L~v~l~~~~~~-~d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
+.- .+++.......+.. +...+++..++..+.+- .++.....+|||+|||+.|||+|+ .+|+++
T Consensus 97 PnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA-----v~PeVl 171 (253)
T COG1117 97 PNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA-----VKPEVL 171 (253)
T ss_pred CCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh-----cCCcEE
Confidence 632 33331111111111 22334455555544321 234456779999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|| ||||++|||++. .++.+.+..+++ ..+++|+|.
T Consensus 172 Lm-DEPtSALDPIsT-~kIEeLi~eLk~-----~yTIviVTH 206 (253)
T COG1117 172 LM-DEPTSALDPIST-LKIEELITELKK-----KYTIVIVTH 206 (253)
T ss_pred Ee-cCcccccCchhH-HHHHHHHHHHHh-----ccEEEEEeC
Confidence 99 999999999986 477788888874 678899986
No 45
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.87 E-value=1.8e-21 Score=192.66 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=129.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------ceeeeeehhhh-hhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRT-HARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------~RigaveQl~~-~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .++|+++|... +...+
T Consensus 13 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGE--IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 358999999999999 9999999999999999999999999999999998775 24899998742 11111
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
++.+....+.. ....+.++++.++..++ +..+..+||||+|++.||++|. .+|+++|| ||||+|||+..+
T Consensus 91 e~l~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD~~~~- 162 (205)
T cd03226 91 EELLLGLKELDA-GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALL-----SGKDLLIF-DEPTSGLDYKNM- 162 (205)
T ss_pred HHHhhhhhhcCc-cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCCccCCHHHH-
Confidence 11111111111 22344566666555433 5667789999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
..+.+.|..+... +.+++++|.- ... +....-.|+++..|+-
T Consensus 163 ~~l~~~l~~~~~~----~~tii~~sH~------~~~----~~~~~d~i~~l~~G~i 204 (205)
T cd03226 163 ERVGELIRELAAQ----GKAVIVITHD------YEF----LAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHHC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEE
Confidence 4666777777542 4567777642 112 2222336777777753
No 46
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.86 E-value=2.2e-21 Score=203.85 Aligned_cols=161 Identities=19% Similarity=0.244 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|+++||.+.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|++.|...+...+.
T Consensus 6 ~~~l~~vs~~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 6 FKAVDGVNFKVREGE--VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred eeEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 458999999999999 99999999999999999999999999999999997752 4899998764433331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++... ...+.++++.+++.. .+..+..+||||+|++.||++|. .+|+++|| ||||+|||+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~ 157 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLI-----HQPDVLFL-DEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCH
Confidence 111111122221 223455566555433 36677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+ ..+.+.+..+.+. +.+++++|.
T Consensus 158 ~~~-~~l~~~l~~~~~~----g~tvi~~sH 182 (302)
T TIGR01188 158 RTR-RAIWDYIRALKEE----GVTILLTTH 182 (302)
T ss_pred HHH-HHHHHHHHHHHhC----CCEEEEECC
Confidence 986 4566778777643 456666665
No 47
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=197.90 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=140.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhh---h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---A 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~---~ 466 (621)
..+|+++++.+.+|+ .++|+|+|||||||+++.|+|+++|+.|.|.+.+.++. ++|+|+|.+.. .
T Consensus 17 ~~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 578999999999999 99999999999999999999999999999999997742 49999998722 1
Q ss_pred hhc--ccceeecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 467 RRL--QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 467 ~~L--~v~l~~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
... .+.|-....+.. ....+.++++.+.+.++ +..+..+|||++||++||.+|+ .+|+++|| ||||+|
T Consensus 95 ~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa-----~~P~iliL-DEPta~ 168 (235)
T COG1122 95 PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLA-----MGPEILLL-DEPTAG 168 (235)
T ss_pred CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHH-----cCCCEEEE-cCCCCC
Confidence 111 111211122222 23455666666665554 7888999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||+..+. .+.+.+.++... .+++.|++|. ... .+..+.-.++.+..|+.+.
T Consensus 169 LD~~~~~-~l~~~l~~L~~~---~~~tii~~tH------d~~----~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 169 LDPKGRR-ELLELLKKLKEE---GGKTIIIVTH------DLE----LVLEYADRVVVLDDGKILA 219 (235)
T ss_pred CCHHHHH-HHHHHHHHHHhc---CCCeEEEEeC------cHH----HHHhhCCEEEEEECCEEee
Confidence 9999874 444777777654 3677888775 122 2445566899999998854
No 48
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.86 E-value=2.4e-22 Score=195.03 Aligned_cols=183 Identities=21% Similarity=0.272 Sum_probs=140.2
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------e----eeeeehhhhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R----SGAVEQLRTHARR 468 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------R----igaveQl~~~~~~ 468 (621)
...++++|||.+.+|+ +++|+|||||||||++.++.|+..|++|+|.+++.|+. | +||..|..+..+.
T Consensus 16 kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~ 93 (243)
T COG1137 16 KRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRK 93 (243)
T ss_pred CeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhc
Confidence 3568899999999999 99999999999999999999999999999999999982 2 8999999988777
Q ss_pred cccc----eeecCCCCCHH-----HHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 469 LQVP----IFEKGYEKDPA-----IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 469 L~v~----l~~~~~~~d~~-----~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
|.|. .......++.. ..+...++.+..... +..-..+|||+++|+.|||+|+ .+|.++|| |||+
T Consensus 94 LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa-----~~P~fiLL-DEPF 167 (243)
T COG1137 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA-----ANPKFILL-DEPF 167 (243)
T ss_pred CcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh-----cCCCEEEe-cCCc
Confidence 7431 11111111211 112234444433333 4556778999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|.||... ..+.+++..+... ++.++| | |+.+-..++++. ..+.+..||-+
T Consensus 168 AGVDPiaV-~dIq~iI~~L~~r----giGvLI-T-----DHNVREtL~i~d----RaYIi~~G~vl 218 (243)
T COG1137 168 AGVDPIAV-IDIQRIIKHLKDR----GIGVLI-T-----DHNVRETLDICD----RAYIISDGKVL 218 (243)
T ss_pred cCCCchhH-HHHHHHHHHHHhC----CceEEE-c-----cccHHHHHhhhh----eEEEEecCeEE
Confidence 99999975 5667777777653 554444 4 578888888887 66777788765
No 49
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.86 E-value=2.3e-21 Score=193.38 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=118.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 468 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~~ 468 (621)
.+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+...
T Consensus 17 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 17 PALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 58999999999999 99999999999999999999999999999999987641 37888887543322
Q ss_pred c------ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 469 L------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 469 L------~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+ .......+... .....+.++++.+....+ +..+..+||||+|++.||++|+ .+|+++|| ||||+|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEPt~~ 168 (216)
T TIGR00960 95 RTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIV-----HKPPLLLA-DEPTGN 168 (216)
T ss_pred ccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCc
Confidence 2 11111011111 112334455555544332 5667889999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+..+. .+.+.+..+.+. +.++|++|.
T Consensus 169 LD~~~~~-~l~~~l~~~~~~----~~tii~vsH 196 (216)
T TIGR00960 169 LDPELSR-DIMRLFEEFNRR----GTTVLVATH 196 (216)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 9998864 555777776532 456777765
No 50
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.86 E-value=1.4e-21 Score=191.18 Aligned_cols=159 Identities=21% Similarity=0.248 Sum_probs=117.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhh--h-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT--H- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~--~- 465 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. +++++.|... +
T Consensus 5 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGE--VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 358999999999999 99999999999999999999999999999999886641 3788888741 1
Q ss_pred ----hhhcccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 466 ----ARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 466 ----~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
.+++..... .++.+.. ..+.++++.+.... .+..+.++|||++|++.|+++|. .+|+++|| |||
T Consensus 83 ~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPL--NLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVA-----MRPDVLLL-DEP 154 (190)
T ss_pred cccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 222211110 1111221 23344454444433 36677899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+|||+..+ ..+.+.|..+.+. +.+++++|.
T Consensus 155 t~~LD~~~~-~~~~~~l~~~~~~----~~tili~sH 185 (190)
T TIGR01166 155 TAGLDPAGR-EQMLAILRRLRAE----GMTVVISTH 185 (190)
T ss_pred cccCCHHHH-HHHHHHHHHHHHc----CCEEEEEee
Confidence 999999886 4556777777542 456777664
No 51
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.86 E-value=1.7e-21 Score=208.14 Aligned_cols=183 Identities=19% Similarity=0.185 Sum_probs=134.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhh-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~- 466 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+.
T Consensus 18 ~~~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 468999999999999 99999999999999999999999999999999998752 489999975433
Q ss_pred -----hhcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 467 -----RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 467 -----~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
+++..++...+... +....+.++++.+++.+. +..+..+||||+||+.|||+|+ .+|+++|+ ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~-----~~P~iLLl-DEPts 169 (343)
T TIGR02314 96 SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNPKVLLC-DEATS 169 (343)
T ss_pred cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCcc
Confidence 33322322111111 112334555665555443 6778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+||+..+. .+.+.|+.+.+. .+++++++|.- ... +....-.|+++-.|+-+
T Consensus 170 ~LD~~t~~-~i~~lL~~l~~~---~g~tiiliTH~------~~~----v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 170 ALDPATTQ-SILELLKEINRR---LGLTILLITHE------MDV----VKRICDCVAVISNGELI 220 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 99999874 444677776542 36788888752 112 23333466777777654
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=2.3e-21 Score=192.51 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=136.6
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~ 467 (621)
....+|++|||+++.|+ +++|+|+|||||||||+.|+|+.++.+|+|.+.|.|+. .+++|+|-+..+.
T Consensus 14 G~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 14 GKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 34789999999999999 99999999999999999999999999999999999983 2899999885555
Q ss_pred hc------ccceeecCCCCCHHHHHHHHHHHHh-h-cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 RL------QVPIFEKGYEKDPAIVAKEAIQEAT-R-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ~L------~v~l~~~~~~~d~~~ia~~al~~~~-~-~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.| .+..+.............++.+++- + ...+..-.++|||+||.++++|+|. .+|+++|| |||+.
T Consensus 92 ~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm-----~~PklLLL-DEPs~ 165 (237)
T COG0410 92 RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM-----SRPKLLLL-DEPSE 165 (237)
T ss_pred hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh-----cCCCEEEe-cCCcc
Confidence 44 3332222110011111223333331 1 2235667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||-|.-..+.| ++++.+.+.. +++++++. ..+..++.++. ..+.+-+|+.+
T Consensus 166 GLaP~iv~~I~-~~i~~l~~~~---g~tIlLVE------Qn~~~Al~iaD----r~yvle~Griv 216 (237)
T COG0410 166 GLAPKIVEEIF-EAIKELRKEG---GMTILLVE------QNARFALEIAD----RGYVLENGRIV 216 (237)
T ss_pred CcCHHHHHHHH-HHHHHHHHcC---CcEEEEEe------ccHHHHHHhhC----EEEEEeCCEEE
Confidence 99998765555 7888887542 56777644 56777777776 45556666655
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=4.1e-21 Score=191.15 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=119.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 13 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGE--FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 358999999999999 99999999999999999999999999999999987652 4889998754332221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++... ...+.++++.+.... .+..+.++||||+|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~~lll-DEPt~~LD~~ 164 (213)
T cd03259 91 ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALA-----REPSLLLL-DEPLSALDAK 164 (213)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 111101111111 123344555444433 25667889999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+ ..+.+.+..+... .+.+++++|.
T Consensus 165 ~~-~~l~~~l~~~~~~---~~~tii~~sH 189 (213)
T cd03259 165 LR-EELREELKELQRE---LGITTIYVTH 189 (213)
T ss_pred HH-HHHHHHHHHHHHH---cCCEEEEEec
Confidence 86 4555777776542 1456677665
No 54
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.5e-21 Score=194.02 Aligned_cols=187 Identities=20% Similarity=0.227 Sum_probs=139.3
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------------ceeeeeehhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLRTH 465 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------------~RigaveQl~~~ 465 (621)
....+|++|+|++++|| +++||||+||||||||++|.|+..++.|+|.+.+.++ .++|+++|...+
T Consensus 15 ~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 44679999999999999 9999999999999999999999999999999999876 249999998766
Q ss_pred hhhc----ccceeecC-----------CCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 466 ARRL----QVPIFEKG-----------YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 466 ~~~L----~v~l~~~~-----------~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
..++ +|-+...+ ..+.....+.++++.++..++ -...-.+|||+|||++|||+|. .+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~-----Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV-----QQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh-----cCCC
Confidence 5554 11111111 122334555666666555443 2345677999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCc
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~D 606 (621)
++|. |||+++||+... +...+.|+++... .++|.|+.- +.+. ++..+.-.|+-+-.|+.+-|
T Consensus 168 iILA-DEPvasLDp~~a-~~Vm~~l~~in~~---~g~Tvi~nL------H~vd----lA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 168 IILA-DEPVASLDPESA-KKVMDILKDINQE---DGITVIVNL------HQVD----LAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred EEec-CCcccccChhhH-HHHHHHHHHHHHH---cCCEEEEEe------chHH----HHHHHHhhheEecCCcEEEe
Confidence 9999 999999999986 4455788887764 377766532 2333 34455557777777777654
No 55
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.5e-21 Score=191.31 Aligned_cols=183 Identities=18% Similarity=0.202 Sum_probs=131.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~v 471 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|...+...+.+
T Consensus 13 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGE--IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 358999999999999 99999999999999999999999999999999886642 48899887644333211
Q ss_pred ----ceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 472 ----PIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 472 ----~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
.+....++.+. ...+.++++.+.... .+..+..+||||+|++.|+++|. .+|+++|+ ||||+|||+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~-----~~p~llll-DEPt~~LD~ 164 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLV-----HRPEVLFL-DEPTIGLDP 164 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccCCCH
Confidence 11111111111 223445555554433 25667889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+ ..+.+.+..+... .+.+++++|. .... +....-.|+++..|+-+
T Consensus 165 ~~~-~~l~~~l~~~~~~---~~~tvi~~tH------~~~~----~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 165 QTR-AHVWEYIEKLKEE---FGMTILLTTH------YMEE----AEQLCDRVAIIDHGRII 211 (220)
T ss_pred HHH-HHHHHHHHHHHHh---cCCEEEEEeC------CHHH----HHHhCCEEEEEeCCEEE
Confidence 886 4566777777543 2456777664 2222 22333477888888765
No 56
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=2.7e-21 Score=192.95 Aligned_cols=162 Identities=21% Similarity=0.165 Sum_probs=119.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~ 466 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .+++++.|...+.
T Consensus 17 ~~il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 458999999999999 9999999999999999999999999999999988653 1388888875433
Q ss_pred hhcc----cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRLQ----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L~----v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+. +.+....++... ...+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL-DEP~ 168 (218)
T cd03255 95 PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALA-----NDPKIILA-DEPT 168 (218)
T ss_pred CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHc-----cCCCEEEE-cCCc
Confidence 2221 111000111111 223444555544433 25667789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|||+..+ ..+.+.+..+... .+.++|++|.
T Consensus 169 ~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH 199 (218)
T cd03255 169 GNLDSETG-KEVMELLRELNKE---AGTTIVVVTH 199 (218)
T ss_pred ccCCHHHH-HHHHHHHHHHHHh---cCCeEEEEEC
Confidence 99999886 4566777777542 2566777775
No 57
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.7e-21 Score=195.29 Aligned_cols=184 Identities=20% Similarity=0.164 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~ 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|++.|...+.
T Consensus 22 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 358999999999999 9999999999999999999999999999999998764 1388999875433
Q ss_pred hh------cccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RR------LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~------L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.. +........... .....+.++++.+..... +..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 100 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~lllL-DEPt 173 (233)
T PRK11629 100 PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALV-----NNPRLVLA-DEPT 173 (233)
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCC
Confidence 22 222111011111 112234455555544332 4567789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~D 606 (621)
+|||+..+ ..+.+.+..+... .+.++|++|.-- -. +.... .++++..|+-+.+
T Consensus 174 ~~LD~~~~-~~l~~~l~~~~~~---~g~tvii~sH~~------~~----~~~~~-~~~~l~~G~i~~~ 226 (233)
T PRK11629 174 GNLDARNA-DSIFQLLGELNRL---QGTAFLVVTHDL------QL----AKRMS-RQLEMRDGRLTAE 226 (233)
T ss_pred CCCCHHHH-HHHHHHHHHHHHh---CCCEEEEEeCCH------HH----HHhhC-EEEEEECCEEEEE
Confidence 99999886 4555777776532 256677777521 11 12223 5677888876543
No 58
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.4e-21 Score=194.66 Aligned_cols=183 Identities=20% Similarity=0.273 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+..
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGE--ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 358999999999999 99999999999999999999999999999999886531 3788888653322
Q ss_pred hcc----cceeecCC-CCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 RLQ----VPIFEKGY-EKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ~L~----v~l~~~~~-~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+. +.+....+ .... ...+.++++.+..... +..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p~llll-DEPt 164 (235)
T cd03261 91 SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALA-----LDPELLLY-DEPT 164 (235)
T ss_pred CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCc
Confidence 221 11110101 1112 2233445555444332 5667789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.+.|..+... .+.+++++|.- ...+ ....-.|+++..|+-+
T Consensus 165 ~~LD~~~~~-~l~~~l~~~~~~---~~~tvi~vsH~------~~~~----~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 165 AGLDPIASG-VIDDLIRSLKKE---LGLTSIMVTHD------LDTA----FAIADRIAVLYDGKIV 216 (235)
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCcEEEEEecC------HHHH----HHhcCEEEEEECCeEE
Confidence 999998864 555777776542 25567777641 2222 2333467777777754
No 59
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=4.9e-21 Score=205.68 Aligned_cols=162 Identities=19% Similarity=0.177 Sum_probs=123.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 17 TQVIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CEEEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 458999999999999 99999999999999999999999999999999998762 499999976444333
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ---~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
...+...+... +....+.++++.+++.++ +..+..+||||+||++|||+|+ .+|+++|| |||+++||+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~-----~~P~llLL-DEP~s~LD~~ 168 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV-----REPAVFLF-DEPLSNLDAK 168 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 22221111111 112334555555555443 5677889999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+. .+.+.|+.+.+. .+++.|++|.
T Consensus 169 ~r~-~l~~~l~~l~~~---~g~tii~vTH 193 (356)
T PRK11650 169 LRV-QMRLEIQRLHRR---LKTTSLYVTH 193 (356)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEeC
Confidence 874 455666666542 3678888886
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=5.2e-21 Score=189.94 Aligned_cols=161 Identities=22% Similarity=0.208 Sum_probs=117.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhh-hhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRT-HARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~-~~~~L 469 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .+++++.|... ....+
T Consensus 14 ~~il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 458999999999999 9999999999999999999999999999999988654 24788888752 11111
Q ss_pred ----ccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 470 ----QVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 470 ----~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++.+....++... ...+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEPt~~L 165 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA-----MDPDILLL-DEPTAGL 165 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccC
Confidence 1111000111111 123344455444332 25667889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+..+. .+.+.|..+... +.+++++|.
T Consensus 166 D~~~~~-~~~~~l~~~~~~----~~tvi~~sH 192 (211)
T cd03225 166 DPAGRR-ELLELLKKLKAE----GKTIIIVTH 192 (211)
T ss_pred CHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 999864 555777776542 456777765
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=7.7e-21 Score=190.25 Aligned_cols=184 Identities=22% Similarity=0.210 Sum_probs=129.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhhhhhhhcc----c
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQ----V 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~~~~~~L~----v 471 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++ .++++++|...+...+. +
T Consensus 17 ~~il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (220)
T cd03293 17 VTALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV 94 (220)
T ss_pred eEEEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHH
Confidence 468999999999999 9999999999999999999999999999999998775 35899998754332221 1
Q ss_pred ceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 472 PIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 472 ~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.+....++... ...+.++++.+.... .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||+..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~lllL-DEPt~~LD~~~~~ 168 (220)
T cd03293 95 ALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA-----VDPDVLLL-DEPFSALDALTRE 168 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-CCCCCCCCHHHHH
Confidence 11101111111 223344555444432 25567889999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEe--cCCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG--CGQSYT 605 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg--~Gq~v~ 605 (621)
.+.+.+..+... .+.+++++|.--+ . +....-.|+++. +|+-+.
T Consensus 169 -~~~~~l~~~~~~---~~~tiii~sH~~~------~----~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 169 -QLQEELLDIWRE---TGKTVLLVTHDID------E----AVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred -HHHHHHHHHHHH---cCCEEEEEecCHH------H----HHHhCCEEEEEECCCCEEEE
Confidence 555777666432 2456777665221 1 222333667777 576543
No 62
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.85 E-value=7.5e-21 Score=189.10 Aligned_cols=182 Identities=19% Similarity=0.133 Sum_probs=128.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc---
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ--- 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~--- 470 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|.+|+|.+.+.++. +++++.|...+...+.
T Consensus 14 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~ 91 (213)
T cd03301 14 TALDDLNLDIADGE--FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYD 91 (213)
T ss_pred eeeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHH
Confidence 58999999999999 99999999999999999999999999999999987652 3889988764332221
Q ss_pred -cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 471 -VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 471 -v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
+.+....++... ...+.++++.+.... .+..+.++|||++|++.|+++|. .+|+++|| ||||+|||+..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p~llll-DEPt~~LD~~~ 165 (213)
T cd03301 92 NIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIV-----REPKVFLM-DEPLSNLDAKL 165 (213)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHHH
Confidence 111101111111 123334444443332 25667889999999999999999 99999999 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+ ..+.+.+..+... .+.+++++|.- ...+ ....-.|.++..|+-+
T Consensus 166 ~-~~l~~~l~~~~~~---~~~tvi~~sH~------~~~~----~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 166 R-VQMRAELKRLQQR---LGTTTIYVTHD------QVEA----MTMADRIAVMNDGQIQ 210 (213)
T ss_pred H-HHHHHHHHHHHHH---cCCEEEEEeCC------HHHH----HHhcCeEEEEECCEEE
Confidence 6 4555777776542 24567777642 1122 2222367777777643
No 63
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.85 E-value=7.6e-21 Score=199.85 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=120.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------ceeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------~RigaveQl~~~~~~L~- 470 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.+. .++|+++|...+...+.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 17 KVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred eEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 458999999999999 9999999999999999999999999999999998764 24899998754332221
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++.+. ...+.++++.+.+.. .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~ 168 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALI-----NDPQLLIL-DEPTTGLDP 168 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCH
Confidence 111111122221 122334455544433 36677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+ ..+.+.|..+... +.+++++|.
T Consensus 169 ~~~-~~l~~~l~~~~~~----g~til~~sH 193 (303)
T TIGR01288 169 HAR-HLIWERLRSLLAR----GKTILLTTH 193 (303)
T ss_pred HHH-HHHHHHHHHHHhC----CCEEEEECC
Confidence 986 4566777777542 566777765
No 64
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.4e-21 Score=204.39 Aligned_cols=183 Identities=22% Similarity=0.210 Sum_probs=133.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ceeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~RigaveQl~~~~~~L~-- 470 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++ .++|+++|...+...+.
T Consensus 19 ~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 19 NTVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 457999999999999 9999999999999999999999999999999999775 35999999764443332
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++... ...+.++++.+++.++ +..+..+|||++||++|||+|+ .+|+++|| |||+++||+.
T Consensus 97 eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~-----~~P~lLLL-DEP~s~LD~~ 170 (351)
T PRK11432 97 ENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI-----LKPKVLLF-DEPLSNLDAN 170 (351)
T ss_pred HHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCCHH
Confidence 211111111222 2344555555555444 6678899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|+.+.+. .+++.+++|.- ...+..+ .-.|..+-.|+-+
T Consensus 171 ~r~-~l~~~l~~l~~~---~g~tii~vTHd------~~e~~~l----aD~i~vm~~G~i~ 216 (351)
T PRK11432 171 LRR-SMREKIRELQQQ---FNITSLYVTHD------QSEAFAV----SDTVIVMNKGKIM 216 (351)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcCC------HHHHHHh----CCEEEEEECCEEE
Confidence 874 555677666542 36778888752 2222222 3356666666543
No 65
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=1.2e-21 Score=195.83 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=139.0
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------e--eeeeehhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 467 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------R--igaveQl~~~~~ 467 (621)
....+++||||++.+|+ +++|||||||||||++++|+|+++|++|+|.+.+.|+. | ++--+|......
T Consensus 15 GGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 45789999999999999 99999999999999999999999999999999999872 2 444566553333
Q ss_pred ------hccccee----------ecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 468 ------RLQVPIF----------EKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 468 ------~L~v~l~----------~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
++.+... ...+.++ ..+.+.+.++.+++.+. +....++|+|+|+++.|||+|+ .+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa-----~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA-----TQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh-----cC
Confidence 3322211 0111112 23445555665555544 6677889999999999999999 99
Q ss_pred CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 528 PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|.++|| |||.+|+.+.... .+.+.++.+.+. .+++++++. +....+.+++. .|+.+-.||.+.
T Consensus 168 P~lLLL-DEPaAGln~~e~~-~l~~~i~~i~~~---~g~tillIE------HdM~~Vm~l~d----ri~Vl~~G~~IA 230 (250)
T COG0411 168 PKLLLL-DEPAAGLNPEETE-ELAELIRELRDR---GGVTILLIE------HDMKLVMGLAD----RIVVLNYGEVIA 230 (250)
T ss_pred CCEEEe-cCccCCCCHHHHH-HHHHHHHHHHhc---CCcEEEEEE------eccHHHhhhcc----EEEeccCCcCcc
Confidence 999999 9999999998764 455777777653 367777755 34555555555 899999999874
No 66
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=4.3e-21 Score=191.00 Aligned_cols=161 Identities=25% Similarity=0.305 Sum_probs=119.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhhhh--------hh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTH--------AR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~~~--------~~ 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .+++++.|...+ .+
T Consensus 12 ~~~l~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e 89 (213)
T cd03235 12 HPVLEDVSFEVKPGE--FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRD 89 (213)
T ss_pred EEeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHH
Confidence 358999999999999 9999999999999999999999999999999998764 248999986532 22
Q ss_pred hcccceeecC--C---CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 468 RLQVPIFEKG--Y---EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 468 ~L~v~l~~~~--~---~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++........ + .......+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll-DEPt~~L 163 (213)
T cd03235 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV-----QDPDLLLL-DEPFAGV 163 (213)
T ss_pred HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccC
Confidence 2221111100 0 0111223444555544332 25567889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+..+ ..+.+.+..+.+. +.++|++|.
T Consensus 164 D~~~~-~~l~~~l~~~~~~----~~tvi~~sH 190 (213)
T cd03235 164 DPKTQ-EDIYELLRELRRE----GMTILVVTH 190 (213)
T ss_pred CHHHH-HHHHHHHHHHHhc----CCEEEEEeC
Confidence 99886 4566777777542 456777764
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.85 E-value=1.2e-20 Score=187.65 Aligned_cols=161 Identities=22% Similarity=0.155 Sum_probs=118.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+..
T Consensus 15 ~~il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 358999999999999 99999999999999999999999999999999887642 3788888754332
Q ss_pred hcc----cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 RLQ----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ~L~----v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+. +.+.....+... ...+.++++.+.... .+..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~lllL-DEPt~ 166 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIV-----NSPPLLLA-DEPTG 166 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCcc
Confidence 221 111100011111 233445555544433 24566789999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+|+..+. .+.+.+..+.+. +.+++++|.
T Consensus 167 ~LD~~~~~-~l~~~l~~~~~~----~~tii~~tH 195 (214)
T TIGR02673 167 NLDPDLSE-RILDLLKRLNKR----GTTVIVATH 195 (214)
T ss_pred cCCHHHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 99999874 555777776542 456777764
No 68
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.85 E-value=4.3e-21 Score=191.90 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=118.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~ 466 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++ .+++++.|...+.
T Consensus 18 ~~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 358999999999999 9999999999999999999999999999999988654 1388999875433
Q ss_pred hhc------ccceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L------~v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+ ........... .....+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++|| ||||
T Consensus 96 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt 169 (221)
T TIGR02211 96 PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALV-----NQPSLVLA-DEPT 169 (221)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE-eCCC
Confidence 322 11110011111 11223344455444332 25567789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|||+..+ ..+.+.|..+... .+.++|++|.
T Consensus 170 ~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~tH 200 (221)
T TIGR02211 170 GNLDNNNA-KIIFDLMLELNRE---LNTSFLVVTH 200 (221)
T ss_pred CcCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 99999886 4555777777542 2456777774
No 69
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.8e-21 Score=197.47 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=129.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhh-------
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLR------- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~------- 463 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++ .++|+++|..
T Consensus 18 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 358999999999999 9999999999999999999999999999999998764 2489999965
Q ss_pred hhhhhcccceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 464 THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 464 ~~~~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
+..+++.......+... .....+.++++.+.+.+ .+..+.++|||++|++.|+++|+ .+|+++|| ||||+||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~-----~~p~llll-DEPt~~L 169 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLA-----MDPDVIVL-DEPMAYL 169 (274)
T ss_pred cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcCC
Confidence 22222221111001111 11123444555544433 36677899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+..+. .+.+.+..+... +.+++++|.--. .+....-.|+.+..|+-+
T Consensus 170 D~~~~~-~l~~~l~~~~~~----g~tili~tH~~~----------~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 170 DPRGQE-TLMEILDRLHNQ----GKTVIVATHDVD----------LAAEWADQVIVLKEGRVL 217 (274)
T ss_pred CHHHHH-HHHHHHHHHHHC----CCEEEEEeCCHH----------HHHHhCCEEEEEECCEEE
Confidence 999874 555777777542 567788775221 122334456666666543
No 70
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=9.6e-21 Score=190.66 Aligned_cols=195 Identities=19% Similarity=0.151 Sum_probs=134.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L 469 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGE--VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 358999999999999 99999999999999999999999999999999986642 388888875433222
Q ss_pred c----cceeecCCCCCHHHHHHHHHHHHh-hc-CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 470 Q----VPIFEKGYEKDPAIVAKEAIQEAT-RN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 470 ~----v~l~~~~~~~d~~~ia~~al~~~~-~~-~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
. +.+....+.......+.++++.+. .. ..+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~illl-DEPt~~LD~ 164 (230)
T TIGR03410 91 TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV-----TRPKLLLL-DEPTEGIQP 164 (230)
T ss_pred cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCcccCCH
Confidence 1 111101111222233344454443 22 236677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccCCCHHHHH
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKKLNVKSIV 616 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~~~~~~v 616 (621)
..+. .+.+.|..+... .+.++|++|.- .-. +....-.|+.+..|+-+. +...+..+.+.
T Consensus 165 ~~~~-~l~~~l~~~~~~---~~~tii~~sH~------~~~----~~~~~d~v~~l~~g~i~~~~~~~~~~~~~~~ 225 (230)
T TIGR03410 165 SIIK-DIGRVIRRLRAE---GGMAILLVEQY------LDF----ARELADRYYVMERGRVVASGAGDELDEDKVR 225 (230)
T ss_pred HHHH-HHHHHHHHHHHc---CCcEEEEEeCC------HHH----HHHhCCEEEEEECCEEEEECCHHHcChHHHH
Confidence 9874 555777776542 25667777642 111 222234677888887653 33334444433
No 71
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.85 E-value=8.5e-21 Score=203.62 Aligned_cols=183 Identities=22% Similarity=0.234 Sum_probs=134.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 17 ~~~l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 17 FTALKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 458999999999999 99999999999999999999999999999999987752 499999976444333
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ---~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
..++....... +....+.++++.+.+.++ +..+..+|||++||++|+|+|+ .+|+++|| |||+++||+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~-----~~P~llLL-DEP~s~LD~~ 168 (353)
T TIGR03265 95 DNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA-----TSPGLLLL-DEPLSALDAR 168 (353)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 22221111111 112345556666555443 6778899999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|..+.+. .+++.|++|.- ...+.. ..-.|+.+-.|+-+
T Consensus 169 ~r~-~l~~~L~~l~~~---~~~tvi~vTHd------~~ea~~----l~d~i~vl~~G~i~ 214 (353)
T TIGR03265 169 VRE-HLRTEIRQLQRR---LGVTTIMVTHD------QEEALS----MADRIVVMNHGVIE 214 (353)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcCC------HHHHHH----hCCEEEEEECCEEE
Confidence 864 555666666542 36788888752 222233 33367777777654
No 72
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.85 E-value=7.1e-21 Score=188.72 Aligned_cols=181 Identities=15% Similarity=0.174 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+...+.
T Consensus 13 ~~~l~~~~~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGE--IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 358999999999999 99999999999999999999999999999999987652 4888888754332221
Q ss_pred --cceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 471 --VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 471 --v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
+.+....+..+ ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+..+.
T Consensus 91 e~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~~~ 163 (208)
T cd03268 91 ENLRLLARLLGIR-KKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL-----GNPDLLIL-DEPTNGLDPDGIK 163 (208)
T ss_pred HHHHHHHHhcCCc-HHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCcccCCHHHHH
Confidence 11111111111 233445555544433 25667889999999999999999 99999999 9999999999864
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.+..+... +.++|++|. | ... +....-.++++..|+-+
T Consensus 164 -~l~~~l~~~~~~----~~tii~~tH-~-----~~~----~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 164 -ELRELILSLRDQ----GITVLISSH-L-----LSE----IQKVADRIGIINKGKLI 205 (208)
T ss_pred -HHHHHHHHHHHC----CCEEEEEcC-C-----HHH----HHHhcCEEEEEECCEEE
Confidence 555777776542 456777764 2 222 22333477777777643
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.85 E-value=7.5e-21 Score=204.03 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=133.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ceeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++ .++|+++|...+...+
T Consensus 15 ~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 15 TQVLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred eEEEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 358999999999999 9999999999999999999999999999999999875 2499999976443332
Q ss_pred ---ccceeec-C-CCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 470 ---QVPIFEK-G-YEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 470 ---~v~l~~~-~-~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
..++... . ...+. ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| |||++|
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~-----~~P~llLL-DEP~s~ 166 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA-----VEPQILLL-DEPFGA 166 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcc
Confidence 2222110 0 11222 2344555665555443 6677899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+..+. .+.+.|..+.+. .+++.+++|.- ... +....-.|+++-.|+-+
T Consensus 167 LD~~~r~-~l~~~L~~l~~~---~g~tii~vTHd------~~e----a~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 167 LDAQVRK-ELRRWLRQLHEE---LKFTSVFVTHD------QEE----AMEVADRVVVMSQGNIE 216 (353)
T ss_pred CCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 9998864 555677766543 36777887752 112 23334467777777654
No 74
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.6e-20 Score=186.40 Aligned_cols=182 Identities=16% Similarity=0.225 Sum_probs=128.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----ceeeeeehhhhhhhhcc----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ---- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----~RigaveQl~~~~~~L~---- 470 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++ .+++++.|...+...+.
T Consensus 13 ~~~l~~v~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 90 (210)
T cd03269 13 VTALDDISFSVEKGE--IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQ 90 (210)
T ss_pred EEEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHHH
Confidence 358999999999999 9999999999999999999999999999999998765 24889988754332221
Q ss_pred cceeecCCCCC---HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 471 VPIFEKGYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 471 v~l~~~~~~~d---~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+.+....++.. ....+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|+ ||||+|+|+..+
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~~lll-DEP~~~LD~~~~ 164 (210)
T cd03269 91 LVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVI-----HDPELLIL-DEPFSGLDPVNV 164 (210)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH
Confidence 11111111111 1223444455444322 24567789999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+.+.+..+... +.+++++|.- .-.+..+ .-.++.+..|+-+
T Consensus 165 -~~~~~~l~~~~~~----~~tii~~sH~------~~~~~~~----~d~i~~l~~g~i~ 207 (210)
T cd03269 165 -ELLKDVIRELARA----GKTVILSTHQ------MELVEEL----CDRVLLLNKGRAV 207 (210)
T ss_pred -HHHHHHHHHHHHC----CCEEEEECCC------HHHHHHh----hhEEEEEeCCEEE
Confidence 4555777776542 4567776652 2222222 2367777777643
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.85 E-value=7.6e-21 Score=199.75 Aligned_cols=160 Identities=18% Similarity=0.222 Sum_probs=121.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|+++||.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|+++|...+...+.
T Consensus 15 ~~~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 15 QNALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred EEEEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 458999999999999 99999999999999999999999999999999997752 4899999765544331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lliL-DEPt~gLD~ 166 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALI-----HDPKVLIL-DEPTTGLDP 166 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCH
Confidence 222222222221 233455555555443 36677889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+ ..|.+.+..+.+ +.+++++|.
T Consensus 167 ~~~-~~l~~~l~~~~~-----~~tiii~sH 190 (301)
T TIGR03522 167 NQL-VEIRNVIKNIGK-----DKTIILSTH 190 (301)
T ss_pred HHH-HHHHHHHHHhcC-----CCEEEEEcC
Confidence 987 456677777743 345566654
No 76
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.2e-21 Score=199.25 Aligned_cols=193 Identities=21% Similarity=0.282 Sum_probs=142.9
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR 463 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~ 463 (621)
...+--++|+||++..|+ |++|+|-+|||||||+++|.++..|+.|+|++.+.|+. +++.|+|..
T Consensus 38 tg~vvGv~~~sl~v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F 115 (386)
T COG4175 38 TGLVVGVNDASLDVEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF 115 (386)
T ss_pred hCcEEeeccceeeecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence 344556889999999999 99999999999999999999999999999999999972 388888865
Q ss_pred ------hhhhhcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 464 ------THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 464 ------~~~~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
+..++....+...+..+ +....+.++++..++.++ +..+..+|||||||+.|||+|+ ++|+++|+ |
T Consensus 116 aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla-----~~~~IlLM-D 189 (386)
T COG4175 116 ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALA-----NDPDILLM-D 189 (386)
T ss_pred ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHc-----cCCCEEEe-c
Confidence 33344333332222222 233566777777777777 6788899999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+++|||.-+. .+.+.|.++... ...|++++|. +||. -++|.-+.+.. +-.|+-+||+|.+
T Consensus 190 EaFSALDPLIR~-~mQdeLl~Lq~~---l~KTIvFitHDLdEA-lriG~rIaimk--dG~ivQ~Gtp~eI 252 (386)
T COG4175 190 EAFSALDPLIRT-EMQDELLELQAK---LKKTIVFITHDLDEA-LRIGDRIAIMK--DGEIVQVGTPEEI 252 (386)
T ss_pred CchhhcChHHHH-HHHHHHHHHHHH---hCCeEEEEecCHHHH-HhccceEEEec--CCeEEEeCCHHHH
Confidence 999999998764 444555555433 3455666664 7775 45555443332 4556666666654
No 77
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=7e-21 Score=205.66 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=123.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 27 ~~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 27 KEVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred eEEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 458999999999999 99999999999999999999999999999999998762 499999976544333
Q ss_pred ---ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 ---QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 ---~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
..++. .++... ...+.++++.+++.++ +..+..+|||++||++|||+|+ .+|+++|| |||+++||
T Consensus 105 eNi~~~l~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~-----~~P~llLL-DEP~s~LD 176 (375)
T PRK09452 105 ENVAFGLR--MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV-----NKPKVLLL-DESLSALD 176 (375)
T ss_pred HHHHHHHh--hcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCcCC
Confidence 22221 111122 2234455555555443 6677889999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+ ..+.+.|+.+.+. .+++.|++|.
T Consensus 177 ~~~r-~~l~~~L~~l~~~---~g~tiI~vTH 203 (375)
T PRK09452 177 YKLR-KQMQNELKALQRK---LGITFVFVTH 203 (375)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 9886 4566777776643 3677888875
No 78
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.85 E-value=1.2e-20 Score=186.49 Aligned_cols=161 Identities=22% Similarity=0.172 Sum_probs=118.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|+++||.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. +++++.|...+.
T Consensus 11 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGK--MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 358999999999999 99999999999999999999999999999999987731 388888875433
Q ss_pred hhcc----cceeecCCCCC---HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRLQ----VPIFEKGYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L~----v~l~~~~~~~d---~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+. +.+.....+.. ....+.++++.++... .+..+..+|||++|++.|+++|. .+|+++|| ||||
T Consensus 89 ~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~-----~~p~llll-DEPt 162 (206)
T TIGR03608 89 ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL-----KDPPLILA-DEPT 162 (206)
T ss_pred cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCc
Confidence 2221 11110011111 1223344555444432 26677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|+|+..+ ..|.+.+..+... +.+++++|.
T Consensus 163 ~~LD~~~~-~~l~~~l~~~~~~----~~tii~~sh 192 (206)
T TIGR03608 163 GSLDPKNR-DEVLDLLLELNDE----GKTIIIVTH 192 (206)
T ss_pred CCCCHHHH-HHHHHHHHHHHhc----CCEEEEEeC
Confidence 99999886 4666777777542 456677664
No 79
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.2e-21 Score=197.82 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=131.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------ceeeeeehhhh-----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT----- 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------~RigaveQl~~----- 464 (621)
.+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 21 KALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 58999999999999 9999999999999999999999999999999998764 14899999642
Q ss_pred --hhhhcccceeecCCCCCHH---HHHHHHHHHHhhc--C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 465 --HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRN--G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 465 --~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~--~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
..+++. +....++.... ..+.++++.+++. . .+..+..+||||+|++.||++|+ .+|+++|| ||
T Consensus 99 ~tv~e~l~--~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~-----~~P~llll-DE 170 (287)
T PRK13637 99 ETIEKDIA--FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA-----MEPKILIL-DE 170 (287)
T ss_pred ccHHHHHH--hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-EC
Confidence 122221 11111112222 3345566665553 2 36677899999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|||+..+. .+.+.+..+... .+.+++++|.- .. .+....-.|+.+..|+-+
T Consensus 171 Pt~gLD~~~~~-~l~~~l~~l~~~---~g~tvi~vtHd------~~----~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 171 PTAGLDPKGRD-EILNKIKELHKE---YNMTIILVSHS------ME----DVAKLADRIIVMNKGKCE 224 (287)
T ss_pred CccCCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HH----HHHHhCCEEEEEECCEEE
Confidence 99999998874 555777777542 25677877752 11 122334466667666654
No 80
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.85 E-value=1.1e-20 Score=203.06 Aligned_cols=183 Identities=17% Similarity=0.195 Sum_probs=133.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++. ++|+++|...+.
T Consensus 6 ~~~l~~vs~~i~~Ge--i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 6 KKGVNDADLAIAKGE--IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred ceeEEeeEEEEcCCC--EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 458999999999999 99999999999999999999999999999999997752 389999875443
Q ss_pred hhc----ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRL----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L----~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+ ++.+.....+... ...+.++++.+.+..+ +..+..+||||+||+.|||+|+ .+|+++|| |||+
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~-----~~p~iLLl-DEP~ 157 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALA-----AEPDILLM-DEAF 157 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCc
Confidence 322 1111111111222 2344555665555443 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++||+..+. .+.+.+..+... .+.+++++|.- .-. +...+-.|+++..|+-+
T Consensus 158 saLD~~~r~-~l~~~l~~l~~~---~~~Tii~vTHd------~~e----a~~~~drI~vl~~G~iv 209 (363)
T TIGR01186 158 SALDPLIRD-SMQDELKKLQAT---LQKTIVFITHD------LDE----AIRIGDRIVIMKAGEIV 209 (363)
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEeCCEEE
Confidence 999999875 444666666532 35677777752 112 22334477777777654
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.3e-20 Score=190.72 Aligned_cols=183 Identities=19% Similarity=0.182 Sum_probs=129.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhh-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~- 466 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+.
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 358999999999999 99999999999999999999999999999999986642 378888865332
Q ss_pred -----hhcccceeec--------C-CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 467 -----RRLQVPIFEK--------G-YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 467 -----~~L~v~l~~~--------~-~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
+++....... . ........+.++++.+.... .+..+..+||||+|++.||++|+ .+|+++
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM-----QQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 2222211100 0 00111223344455444432 25667889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+... .+.++|++|.--. .+....-.|+.+..|+-+
T Consensus 167 ll-DEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~tH~~~----------~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 167 LA-DEPVASLDPASS-RQVMDLLKRINRE---EGITVIVSLHQVD----------LAREYADRIVGLKDGRIV 224 (241)
T ss_pred EE-eCccccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeCCHH----------HHHHhCCEEEEEECCEEE
Confidence 99 999999999886 4555777777542 2556777765211 123334477788888765
No 82
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.9e-21 Score=191.89 Aligned_cols=183 Identities=19% Similarity=0.181 Sum_probs=128.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+...+.
T Consensus 15 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 358999999999999 99999999999999999999999999999999987642 4889988754332221
Q ss_pred --cceeecCCCC----CH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 471 --VPIFEKGYEK----DP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 471 --v~l~~~~~~~----d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+.+....+.. +. ...+.++++.+.... .+..+.++||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEP~~~ 166 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALA-----VEPKVLLL-DEPFGA 166 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccc
Confidence 1111000110 11 123344455444433 25567789999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+..+ ..+.+.|..+... .+.++|++|.- ... +....--|+++..|+-+
T Consensus 167 LD~~~~-~~l~~~l~~~~~~---~~~tvii~sH~------~~~----~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 167 LDAKVR-KELRRWLRRLHDE---LHVTTVFVTHD------QEE----ALEVADRVVVMNKGRIE 216 (239)
T ss_pred CCHHHH-HHHHHHHHHHHHH---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCeEE
Confidence 999886 4555777777542 24567777642 111 22223366777777654
No 83
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.85 E-value=1.5e-20 Score=187.57 Aligned_cols=180 Identities=19% Similarity=0.182 Sum_probs=129.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~-- 470 (621)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 19 ~il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 58999999999999 99999999999999999999999999999999887642 3888888764433221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 97 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~ 170 (218)
T cd03266 97 ENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALV-----HDPPVLLL-DEPTTGLDVM 170 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCcCCCHH
Confidence 111111111111 233445555554433 25667789999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+ ..|.+.|..+... +.++|++|.- ...+ ....-.|.++..|+-
T Consensus 171 ~~-~~l~~~l~~~~~~----~~tii~~tH~------~~~~----~~~~d~i~~l~~G~i 214 (218)
T cd03266 171 AT-RALREFIRQLRAL----GKCILFSTHI------MQEV----ERLCDRVVVLHRGRV 214 (218)
T ss_pred HH-HHHHHHHHHHHHC----CCEEEEEeCC------HHHH----HHhcCEEEEEECCEE
Confidence 86 4666788777542 5567777652 1122 222336777777754
No 84
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.84 E-value=1.2e-20 Score=188.74 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L 469 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGE--IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 358999999999999 99999999999999999999999999999999986541 388998876433322
Q ss_pred c----cceeecCCC-CCHHHHHHHHHHHH-hhc-CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 Q----VPIFEKGYE-KDPAIVAKEAIQEA-TRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 ~----v~l~~~~~~-~d~~~ia~~al~~~-~~~-~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
. +.+....+. ......+.++++.+ ... ..+..+.++|||++|++.|+++|. .+|+++|| ||||+|||
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD 164 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM-----SRPKLLLL-DEPSEGLA 164 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCcccCC
Confidence 1 111111111 11222333444444 222 246677889999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+..+ ..|.+.|..+.. .+.++|++|.-. .. +....-.|+++-.|+-+.
T Consensus 165 ~~~~-~~l~~~l~~~~~----~~~tiii~sH~~------~~----~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 165 PKIV-EEIFEAIRELRD----EGVTILLVEQNA------RF----ALEIADRAYVLERGRVVL 212 (222)
T ss_pred HHHH-HHHHHHHHHHHH----CCCEEEEEeCCH------HH----HHHhccEEEEeeCCeEEE
Confidence 9886 456677777754 256677777521 12 223334778888887653
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.84 E-value=1.4e-20 Score=190.90 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=128.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|+++|.+|+|.+.+.++. ++|++.|...+..
T Consensus 15 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 358999999999999 99999999999999999999999999999999987641 2788888653322
Q ss_pred ------hcccceeec---------CCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 468 ------RLQVPIFEK---------GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 468 ------~L~v~l~~~---------~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
++....... .........+.++++.+.... .+..+..+|||++|++.||++|+ .+|+++
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA-----QQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 221111100 001111223344454443332 25667889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+.+. .+.++|++|.- ... +....-.|+++..|+-+
T Consensus 168 ll-DEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tiii~tH~------~~~----~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 168 LA-DEPIASLDPKTS-KQVMDYLKRINKE---DGITVIINLHQ------VDL----AKKYADRIVGLKAGEIV 225 (243)
T ss_pred EE-eCCcccCCHHHH-HHHHHHHHHHHHH---cCCEEEEEeCC------HHH----HHHhcCeEEEEECCEEE
Confidence 99 999999999876 4555777776542 24567777652 112 22223367777777754
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.84 E-value=2.2e-20 Score=185.68 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=117.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++++++|...+..
T Consensus 14 ~~~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 358999999999999 99999999999999999999999999999999887642 3788888653322
Q ss_pred ------hcccceeecCCCCC-HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 ------RLQVPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ------~L~v~l~~~~~~~d-~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
++...........+ ....+.++++.++.... +..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 92 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~ 165 (214)
T cd03292 92 DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIV-----NSPTILIA-DEPTG 165 (214)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 22111110111111 11233444544433322 4566789999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+ ..+.+.+..+.+. +.++|++|.
T Consensus 166 ~LD~~~~-~~~~~~l~~~~~~----~~tiiivtH 194 (214)
T cd03292 166 NLDPDTT-WEIMNLLKKINKA----GTTVVVATH 194 (214)
T ss_pred cCCHHHH-HHHHHHHHHHHHc----CCEEEEEeC
Confidence 9999886 4555777777532 456777775
No 87
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.84 E-value=1.5e-20 Score=189.78 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=129.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~-- 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|.+|+|.+.+.++. ++++++|...+..
T Consensus 13 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGE--IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 358999999999999 99999999999999999999999999999999886541 3788888653322
Q ss_pred ----hcccceeecCC-----------CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 468 ----RLQVPIFEKGY-----------EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 468 ----~L~v~l~~~~~-----------~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
++......... .......+.++++.+.... .+..+.++||||+|++.|+++|. .+|+++
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA-----TDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 22111110000 0011223444555554433 25667889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+ ||||+|||+..+ ..+.+.+..+... +.++|++|.- ... +....-.|+++..|+-+
T Consensus 166 ll-DEPt~~LD~~~~-~~l~~~l~~~~~~----~~tii~vsH~------~~~----~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 166 LL-DEPAAGLNPEET-EELAELIRELRER----GITVLLVEHD------MDV----VMSLADRVTVLDQGRVI 222 (236)
T ss_pred EE-cCCcccCCHHHH-HHHHHHHHHHHHC----CCEEEEEecC------HHH----HHHhCCEEEEEeCCEEE
Confidence 99 999999999886 4555777777542 4567777642 222 22334477888888754
No 88
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=205.20 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=131.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTH 465 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~ 465 (621)
...+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+
T Consensus 40 ~~~~L~~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 3457999999999999 99999999999999999999999999999999987641 48999987543
Q ss_pred hh------hcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 466 AR------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 466 ~~------~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
.. ++.......+... .....+.++++.+.+..+ +..+..+||||+|++.||++|+ .+|+++|| |||
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~-----~~P~iLLL-DEP 191 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALA-----INPDILLM-DEA 191 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECC
Confidence 32 2222111111111 112334455665555443 5677889999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|||+..+. .+.+.|..+... .+.++|++|.- ... +....-.|+++..|+-+
T Consensus 192 ts~LD~~~r~-~l~~~L~~l~~~---~g~TIIivTHd------~~~----~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 192 FSALDPLIRT-EMQDELVKLQAK---HQRTIVFISHD------LDE----AMRIGDRIAIMQNGEVV 244 (400)
T ss_pred CccCCHHHHH-HHHHHHHHHHHH---CCCeEEEEECC------HHH----HHHhCCEEEEEECCEEE
Confidence 9999999874 555677666532 25667777652 111 22233466667666543
No 89
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.1e-20 Score=197.54 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=130.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~--- 463 (621)
..+|++|+|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++|+++|..
T Consensus 20 ~~~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 358999999999999 99999999999999999999999999999999987641 489999864
Q ss_pred ----hhhhhcccceeecCCCCCH---HHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 464 ----THARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 464 ----~~~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+..+++.... ...+.+. ...+.++++.+.+. . .+..+..+||||+|++.||++|+ .+|+++||
T Consensus 98 l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~P~llll- 169 (290)
T PRK13634 98 LFEETVEKDICFGP--MNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA-----MEPEVLVL- 169 (290)
T ss_pred hhhhhHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 2222222111 1111122 23445566666553 3 35677899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .|.+.|..+... .+.++|++|.--. . +....-.|+.+..|+-+
T Consensus 170 DEPt~~LD~~~~~-~l~~~L~~l~~~---~g~tviiitHd~~------~----~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 170 DEPTAGLDPKGRK-EMMEMFYKLHKE---KGLTTVLVTHSME------D----AARYADQIVVMHKGTVF 225 (290)
T ss_pred ECCcccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCCHH------H----HHHhCCEEEEEECCEEE
Confidence 9999999999874 555777777542 2567777775211 1 22333366666666644
No 90
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.84 E-value=2.5e-20 Score=179.59 Aligned_cols=173 Identities=46% Similarity=0.709 Sum_probs=143.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
|+++|+|++|+||||++..++..+...+.+|.+.++|++|.+..+|+..+++.++++++......++.....+.+.....
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999998888888999999999999999999999999999887766666777666666666556
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
.+++++++|++|..+....++..|..+.....|+.++||.++.++.+.......|.+ ..+++++|+||+|
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~~----------~~~~~~viltk~D 150 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNE----------ALGITGVILTKLD 150 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHh----------hCCCCEEEEECCc
Confidence 688999999999987777778888777766779999998888776655443322211 1247899999999
Q ss_pred ccccchhHHHHhHHHhCCcEEEEe
Q 007024 576 TIDDKVGAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 576 e~~~~vG~~ls~~~~~g~PI~fvg 599 (621)
+. .+.|.+++++..+++||.|+|
T Consensus 151 ~~-~~~g~~~~~~~~~~~p~~~~~ 173 (173)
T cd03115 151 GD-ARGGAALSIRAVTGKPIKFIG 173 (173)
T ss_pred CC-CCcchhhhhHHHHCcCeEeeC
Confidence 98 799999999999999999986
No 91
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.84 E-value=2.4e-20 Score=187.88 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=128.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~~~L 469 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++ .++++++|...+...+
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGE--IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 358999999999999 9999999999999999999999999999999988653 1388888875433322
Q ss_pred c----cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 470 Q----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 470 ~----v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
. +.+....+.... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~L 164 (232)
T cd03218 91 TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALA-----TNPKFLLL-DEPFAGV 164 (232)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCcccC
Confidence 1 111111111111 122334444443332 25567789999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+..+ ..+.+.+..+... +.++|++|.- ... +....-.|+++..|+-+
T Consensus 165 D~~~~-~~~~~~l~~~~~~----~~tii~~sH~------~~~----~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 165 DPIAV-QDIQKIIKILKDR----GIGVLITDHN------VRE----TLSITDRAYIIYEGKVL 212 (232)
T ss_pred CHHHH-HHHHHHHHHHHHC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCeEE
Confidence 99986 4555777777542 4566776642 112 23334477888888764
No 92
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.7e-20 Score=200.67 Aligned_cols=183 Identities=19% Similarity=0.207 Sum_probs=131.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+..
T Consensus 18 ~~il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 468999999999999 99999999999999999999999999999999987752 3899998754332
Q ss_pred ------hcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 ------RLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ------~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
++..+....+... .....+.++++.+++.++ +..+..+||||+|++.||++|+ .+|+++|| ||||+
T Consensus 96 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~iLlL-DEPts 169 (343)
T PRK11153 96 SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA-----SNPKVLLC-DEATS 169 (343)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 2222111011111 112234455555544433 5667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+..+. .+.+.|..+... .+.++|++|.- .-. +....-.|+++..|+-+
T Consensus 170 ~LD~~~~~-~l~~~L~~l~~~---~g~tiilvtH~------~~~----i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 170 ALDPATTR-SILELLKDINRE---LGLTIVLITHE------MDV----VKRICDRVAVIDAGRLV 220 (343)
T ss_pred cCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 99998864 555777777542 25677777642 111 22333467777777654
No 93
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=196.62 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=120.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~--- 463 (621)
..+|++|+|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 358999999999999 99999999999999999999999999999999987641 389999964
Q ss_pred ----hhhhhcccceeecCCCC-CHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 464 ----THARRLQVPIFEKGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 464 ----~~~~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
+..+++.......+... .....+.++++.+++. . .+..+.++|||++|++.||++|+ .+|+++|| ||
T Consensus 98 l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~-----~~p~illl-DE 171 (286)
T PRK13646 98 LFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA-----MNPDIIVL-DE 171 (286)
T ss_pred cchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-EC
Confidence 22233322111111111 1123344555555443 2 24667889999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+|||+..+. .+.+.+..+... .+.+++++|.
T Consensus 172 Pt~~LD~~~~~-~l~~~l~~l~~~---~g~tvl~vtH 204 (286)
T PRK13646 172 PTAGLDPQSKR-QVMRLLKSLQTD---ENKTIILVSH 204 (286)
T ss_pred CcccCCHHHHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 99999999874 555777777542 2567788775
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.84 E-value=2.3e-20 Score=186.47 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 15 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 458999999999999 99999999999999999999999999999999987652 3889988653332221
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.+....++... ...+.++++.+.+.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+|+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~~~LD~ 166 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALI-----GGPSVLLL-DEPTSGLDP 166 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCCCCCH
Confidence 111111111111 123444555444432 25667889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+ ..+.+.|..+.. ..+++++|.- ... +....-.|+++..|+-+
T Consensus 167 ~~~-~~l~~~l~~~~~-----~~tii~~sH~------~~~----~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 167 ASR-RAIWDLILEVRK-----GRSIILTTHS------MDE----AEALCDRIAIMSDGKLR 211 (220)
T ss_pred HHH-HHHHHHHHHHhc-----CCEEEEEcCC------HHH----HHHhcCEEEEEECCEEE
Confidence 886 455577777653 2566776642 112 22233477788888765
No 95
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=1.6e-20 Score=186.60 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=118.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARR 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~~~~~ 468 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. +++++.|...+...
T Consensus 13 ~~~l~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGE--VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 358999999999999 99999999999999999999999999999999987641 37888887543322
Q ss_pred cc----cceeec-CCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 469 LQ----VPIFEK-GYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 469 L~----v~l~~~-~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
+. +.+... .+..+. ...+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 91 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~~ 164 (213)
T cd03262 91 LTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALA-----MNPKVMLF-DEPTS 164 (213)
T ss_pred CcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcc
Confidence 21 111000 011111 123344444443322 25667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+ ..+.+.+..+... +.++|++|.
T Consensus 165 ~LD~~~~-~~l~~~l~~~~~~----~~tvi~~sh 193 (213)
T cd03262 165 ALDPELV-GEVLDVMKDLAEE----GMTMVVVTH 193 (213)
T ss_pred CCCHHHH-HHHHHHHHHHHHc----CCEEEEEeC
Confidence 9999886 4666788877642 456777664
No 96
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.84 E-value=1.6e-20 Score=190.06 Aligned_cols=182 Identities=19% Similarity=0.188 Sum_probs=128.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------ceeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------~RigaveQl~~~~~~L~- 470 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++ .++++++|...+...+.
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 358999999999999 9999999999999999999999999999999988764 24888888754322221
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.+....++... ...+.++++.++... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|+|+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~ 165 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALL-----HRPALLLL-DEPTVGLDP 165 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccCCCH
Confidence 111111111111 122334444443322 35667889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+. .+.+.|..+++. .+.+.+++|.--.. +.. .-.|+++..|+-+
T Consensus 166 ~~~~-~l~~~l~~~~~~---~~~tiii~sH~~~~----------~~~-~d~i~~l~~G~i~ 211 (236)
T TIGR03864 166 ASRA-AIVAHVRALCRD---QGLSVLWATHLVDE----------IEA-DDRLVVLHRGRVL 211 (236)
T ss_pred HHHH-HHHHHHHHHHHh---CCCEEEEEecChhh----------Hhh-CCEEEEEeCCeEE
Confidence 9874 555777777532 24567777642111 112 3467777777754
No 97
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=1.7e-20 Score=178.24 Aligned_cols=187 Identities=21% Similarity=0.176 Sum_probs=143.8
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR 463 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~ 463 (621)
..+..||++|++.+..|+ .++||||+||||||||..|||+-.|++|+|.+.+.+.+ ++|+|+|-.
T Consensus 20 ~~~l~IL~~V~L~v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF 97 (228)
T COG4181 20 EGELSILKGVELVVKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF 97 (228)
T ss_pred CcceeEeecceEEecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence 346789999999999999 99999999999999999999999999999999998872 399999977
Q ss_pred hhhhhc------ccceeecCC-CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 464 THARRL------QVPIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 464 ~~~~~L------~v~l~~~~~-~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
.+..+| .+|+...+. ..++...+.+.++..++.. ....+..+|||+|||++|||+++ ..|++++. |
T Consensus 98 ~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa-----~~P~vLfA-D 171 (228)
T COG4181 98 HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFA-----GRPDVLFA-D 171 (228)
T ss_pred eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhc-----CCCCEEec-c
Confidence 554444 556654442 3455566777777666543 46788899999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTD 606 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~D 606 (621)
|||-+||...-. .+.+.|- ...+.++.+.+++|. |.. +..-+..++.+-.|+-+.|
T Consensus 172 EPTGNLD~~Tg~-~iaDLlF---~lnre~G~TlVlVTH-D~~----------LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 172 EPTGNLDRATGD-KIADLLF---ALNRERGTTLVLVTH-DPQ----------LAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCCCCcchhHHH-HHHHHHH---HHhhhcCceEEEEeC-CHH----------HHHhhhheeeeecceeccC
Confidence 999999987653 2223333 333567889999986 432 2233446677777776543
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=193.30 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=118.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhhhhhhhccc----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRLQV---- 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~~~~~~L~v---- 471 (621)
..+|+++||.+.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.+. .++++++|...+...+.+
T Consensus 25 ~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 25 RTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHH
Confidence 358999999999999 9999999999999999999999999999999987664 248999987544332211
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
.+. ........+.++++.+.... .+..+..+||||+|++.|+++|. .+|+++|| ||||+|||+..+. .+
T Consensus 103 ~~~---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~-----~~p~lllL-DEPt~~LD~~~~~-~l 172 (257)
T PRK11247 103 GLG---LKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALI-----HRPGLLLL-DEPLGALDALTRI-EM 172 (257)
T ss_pred Hhc---ccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCCCCHHHHH-HH
Confidence 110 01111233445555554433 25667889999999999999999 99999999 9999999998864 55
Q ss_pred HHHHHHhhcCCCCCCceEEEecc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.|..+... .+.++|++|.
T Consensus 173 ~~~L~~~~~~---~~~tviivsH 192 (257)
T PRK11247 173 QDLIESLWQQ---HGFTVLLVTH 192 (257)
T ss_pred HHHHHHHHHH---cCCEEEEEeC
Confidence 5677766432 2456777764
No 99
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=3.1e-20 Score=186.08 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=126.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. ++++++|...+..
T Consensus 15 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 358999999999999 99999999999999999999999999999999887642 3788888654322
Q ss_pred hcc----cceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 RLQ----VPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ~L~----v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+. +.+.....+.... ..+.++++.+.... .+..+..+||||+|++.|+++|. .+|+++|| ||||+
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~ 166 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVV-----NKPAVLLA-DEPTG 166 (222)
T ss_pred cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 221 1111001111222 12334444443332 25667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
|||+..+ ..+.+.+..+... +.+++++|.- ... +....-.|+++..|+-
T Consensus 167 ~LD~~~~-~~l~~~l~~~~~~----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i 215 (222)
T PRK10908 167 NLDDALS-EGILRLFEEFNRV----GVTVLMATHD------IGL----ISRRSYRMLTLSDGHL 215 (222)
T ss_pred cCCHHHH-HHHHHHHHHHHHC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEE
Confidence 9999876 4555777777542 4567777642 111 2222336667766654
No 100
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=3.7e-20 Score=191.40 Aligned_cols=184 Identities=20% Similarity=0.221 Sum_probs=129.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTH 465 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~ 465 (621)
...+|++++|++.+|+ +++|+||||||||||+++|+|++.|.+|+|.+.+.++ .++|+++|...+
T Consensus 36 ~~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 4568999999999999 9999999999999999999999999999999988654 148888887543
Q ss_pred hhhc------ccceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 466 ARRL------QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 466 ~~~L------~v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
...+ .......+... .....+.++++.+.+.. .+..+..+||||+|++.||++|+ .+|+++|| |||
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~-----~~p~illL-DEP 187 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALA-----VDPDILLM-DEA 187 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 3222 11111011111 11123344555544433 25667789999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|||+..+ ..+.+.+..+... .+.++|++|.- ... +....--|.++-.|+-+
T Consensus 188 t~~LD~~~~-~~l~~~l~~~~~~---~g~tiii~tH~------~~~----~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 188 FSALDPLIR-REMQDELLRLQAE---LQKTIVFITHD------LDE----ALRLGDRIAIMKDGRLV 240 (269)
T ss_pred CccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhcCEEEEEECCEEE
Confidence 999999886 4555777777542 25667777752 112 22223366777777654
No 101
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.84 E-value=3.9e-20 Score=187.58 Aligned_cols=185 Identities=20% Similarity=0.240 Sum_probs=127.0
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------ceeeeee-hhhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVE-QLRTHARR 468 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------~Rigave-Ql~~~~~~ 468 (621)
....+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+. .+++++. |...+...
T Consensus 32 ~~~~il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34569999999999999 9999999999999999999999999999999988764 1477775 43222221
Q ss_pred c----ccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 469 L----QVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 469 L----~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+ ++.+....++.... ..+..+++.+.... .+..+.++|||++|++.|+++|+ .+|+++|| ||||+|
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~ 183 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALL-----HEPEILFL-DEPTIG 183 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCC
Confidence 1 11111111111221 22333444433322 35667889999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+..+ ..+.+.|..+... .+.++|++|.-- .. +....-.|+++..|+-+
T Consensus 184 LD~~~~-~~l~~~l~~~~~~---~~~tiiivsH~~------~~----~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 184 LDVVAQ-ENIRNFLKEYNRE---RGTTVLLTSHYM------KD----IEALARRVLVIDKGRLL 233 (236)
T ss_pred CCHHHH-HHHHHHHHHHHhc---CCCEEEEEecCH------HH----HHHhCCEEEEEeCCEEE
Confidence 999987 4566777776542 245667766421 12 22333467777777643
No 102
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.84 E-value=2.2e-20 Score=187.83 Aligned_cols=181 Identities=22% Similarity=0.156 Sum_probs=127.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHAR 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~~ 467 (621)
.+|+++||++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+..
T Consensus 24 ~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 48999999999999 9999999999999999999999999999999988654 13888888754333
Q ss_pred hc------ccceeecCCC-CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 RL------QVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ~L------~v~l~~~~~~-~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+ .......... ......+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 102 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~-----~~p~llll-DEPt~ 175 (228)
T PRK10584 102 TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN-----GRPDVLFA-DEPTG 175 (228)
T ss_pred CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCC
Confidence 22 1111001111 111223444555544432 25567789999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+..+ ..+.+.|..+... .+.++|++|.-. -. +.. .-.++++..|+-+
T Consensus 176 ~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH~~------~~----~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 176 NLDRQTG-DKIADLLFSLNRE---HGTTLILVTHDL------QL----AAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred CCCHHHH-HHHHHHHHHHHHh---cCCEEEEEecCH------HH----HHh-CCEEEEEECCEEE
Confidence 9999886 4566777777542 245677766421 11 111 2367777777643
No 103
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=6e-21 Score=189.12 Aligned_cols=159 Identities=16% Similarity=0.068 Sum_probs=117.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHA----- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~----- 466 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. +++++.|...+.
T Consensus 14 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 358999999999999 99999999999999999999999999999999987652 377777654322
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+++.... ..++......+.++++.++... .+..+.++|||++|++.|+++|+ .+|+++|+ ||||+|+|+.
T Consensus 92 ~e~l~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~~ 163 (204)
T PRK13538 92 LENLRFYQ--RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWL-----TRAPLWIL-DEPFTAIDKQ 163 (204)
T ss_pred HHHHHHHH--HhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHH
Confidence 2222111 1111112233445555554433 25667889999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+. .+.+.|..+... +.+++++|.
T Consensus 164 ~~~-~l~~~l~~~~~~----~~tiii~sh 187 (204)
T PRK13538 164 GVA-RLEALLAQHAEQ----GGMVILTTH 187 (204)
T ss_pred HHH-HHHHHHHHHHHC----CCEEEEEec
Confidence 864 555777776542 345666654
No 104
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.84 E-value=1.2e-20 Score=202.96 Aligned_cols=183 Identities=19% Similarity=0.194 Sum_probs=133.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcC--cEEEEccccc-------ceeeeeehhhhhhhhc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--VSVMMAACDT-------FRSGAVEQLRTHARRL- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~--GkV~I~~~Dt-------~RigaveQl~~~~~~L- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|+. |+|.+.+.++ .++|+++|...+...+
T Consensus 18 ~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 18 NTVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred eEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 358999999999999 999999999999999999999999999 9999998775 2499999976443333
Q ss_pred -----ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 -----QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 -----~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
..++....... .....+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| |||+++||
T Consensus 96 v~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~-----~~P~llLL-DEP~s~LD 169 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA-----IEPDVLLL-DEPLSALD 169 (362)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCccccCC
Confidence 22221111111 112334555665555443 6778899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC-CceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQ-LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~-~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+ ..+.+.|..+.+. . +++.|++|.-- .. +....-.|+++-.|+-+
T Consensus 170 ~~~r-~~l~~~l~~l~~~---~~g~til~vTHd~------~e----a~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 170 ANIR-ANMREEIAALHEE---LPELTILCVTHDQ------DD----ALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHH-HHHHHHHHHHHHh---CCCCEEEEEeCCH------HH----HHHhCCEEEEEECCEEE
Confidence 9886 4555677666542 2 57788887521 11 22333366666666654
No 105
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=1.3e-20 Score=185.67 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=118.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------ceeeeeehhhhhhhhc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHARRL-- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------~RigaveQl~~~~~~L-- 469 (621)
..+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+
T Consensus 13 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 13 RMLFEGLSFTLNAGE--ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 358999999999999 9999999999999999999999999999999998764 2377887754322111
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 470 --QVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 470 --~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
++.+........ ...+.++++.+.... .+..+.++|||++|++.|+++|. .+|+++|| ||||+|+|+..+
T Consensus 91 ~~~l~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~~ 163 (198)
T TIGR01189 91 LENLHFWAAIHGGA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL-----SRAPLWIL-DEPTTALDKAGV 163 (198)
T ss_pred HHHHHHHHHHcCCc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH
Confidence 111111111111 223445555544433 25667889999999999999999 99999999 999999999875
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+.+.+..+... +.++|++|.
T Consensus 164 -~~l~~~l~~~~~~----~~tii~~sH 185 (198)
T TIGR01189 164 -ALLAGLLRAHLAR----GGIVLLTTH 185 (198)
T ss_pred -HHHHHHHHHHHhC----CCEEEEEEc
Confidence 5666788777543 456777776
No 106
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=195.48 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=128.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--T 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~--~ 464 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. ++|+++|.. .
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 358999999999999 99999999999999999999999999999999997641 388998864 1
Q ss_pred h-----hhhcccceeecCCCCCH---HHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 465 H-----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 465 ~-----~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+ .+++..... .+.... ...+.++++.+++. . .+..+.++||||+|++.|+++|+ .+|+++||
T Consensus 98 ~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~-----~~p~lLlL- 169 (287)
T PRK13641 98 LFENTVLKDVEFGPK--NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA-----YEPEILCL- 169 (287)
T ss_pred hccchHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 2 222221111 111122 22344555555543 2 25677899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.|..+.+ .+.+++++|.--. .+....--|+++..|+-+
T Consensus 170 DEPt~gLD~~~~-~~l~~~l~~l~~----~g~tvlivsH~~~----------~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 170 DEPAAGLDPEGR-KEMMQLFKDYQK----AGHTVILVTHNMD----------DVAEYADDVLVLEHGKLI 224 (287)
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHHh----CCCEEEEEeCCHH----------HHHHhCCEEEEEECCEEE
Confidence 999999999886 456677777653 2567777765211 122333456666666543
No 107
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=201.18 Aligned_cols=183 Identities=19% Similarity=0.162 Sum_probs=130.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 16 VVISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 358999999999999 99999999999999999999999999999999987752 489999975443322
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ---~v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
...+...+... +....+.++++.+.+.. .+..+..+||||+|++.|||+|+ .+|+++|| ||||++||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~-----~~P~lLLL-DEPts~LD~~ 167 (369)
T PRK11000 94 ENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEPSVFLL-DEPLSNLDAA 167 (369)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 22211111111 11233445555555443 25677889999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|..+... .+.++|++|.- ...+ ....-.|+++..|+-+
T Consensus 168 ~~~-~l~~~L~~l~~~---~g~tvI~vTHd------~~~~----~~~~d~i~vl~~G~i~ 213 (369)
T PRK11000 168 LRV-QMRIEISRLHKR---LGRTMIYVTHD------QVEA----MTLADKIVVLDAGRVA 213 (369)
T ss_pred HHH-HHHHHHHHHHHH---hCCEEEEEeCC------HHHH----HHhCCEEEEEECCEEE
Confidence 864 555667666542 25677777752 1112 2223366666666543
No 108
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.84 E-value=1.7e-20 Score=204.09 Aligned_cols=182 Identities=17% Similarity=0.173 Sum_probs=131.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L- 469 (621)
..+|++++|.+.+|+ +++|+|||||||||||++|+|+++|.+|+|.+.+.++. ++|++.|...+...+
T Consensus 16 ~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~t 93 (402)
T PRK09536 16 TTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFD 93 (402)
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCC
Confidence 468999999999999 99999999999999999999999999999999997752 489998865432222
Q ss_pred -----ccceee--cCC---CCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 470 -----QVPIFE--KGY---EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 470 -----~v~l~~--~~~---~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+..+. ... .......+.++++.++..++ +..+..+||||+||+.|||+|+ .+|+++|| ||||
T Consensus 94 v~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~-----~~P~iLLL-DEPt 167 (402)
T PRK09536 94 VRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALA-----QATPVLLL-DEPT 167 (402)
T ss_pred HHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCc
Confidence 111110 011 11123445666766655443 5677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.++|+.+.+. +.++|++|.- . +.+....-.|+.+-.|+-+
T Consensus 168 sgLD~~~~~-~l~~lL~~l~~~----g~TIIivsHd------l----~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 168 ASLDINHQV-RTLELVRRLVDD----GKTAVAAIHD------L----DLAARYCDELVLLADGRVR 218 (402)
T ss_pred ccCCHHHHH-HHHHHHHHHHhc----CCEEEEEECC------H----HHHHHhCCEEEEEECCEEE
Confidence 999999875 455788877642 4566666541 1 1233333456666666554
No 109
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.84 E-value=2e-20 Score=188.88 Aligned_cols=180 Identities=19% Similarity=0.220 Sum_probs=124.9
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----eeeeeehhhhhhh------hcccc
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHAR------RLQVP 472 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----RigaveQl~~~~~------~L~v~ 472 (621)
|++++|++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. +.+++.|...+.. ++...
T Consensus 1 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGE--FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence 468999999999 99999999999999999999999999999999987652 3578888653322 22221
Q ss_pred eeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 473 IFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 473 l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
+.......+. ...+.++++.+.... .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+..+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~gLD~~~~-~ 151 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALS-----IRPKVLLL-DEPFGALDALTR-G 151 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCCcCCCHHHH-H
Confidence 1000011111 123344555544433 25677889999999999999999 99999999 999999999986 4
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.|..+.+. .+.++|++|.- ...+. ...-.|+++..|+.+
T Consensus 152 ~l~~~l~~~~~~---~~~tii~~sH~------~~~~~----~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 152 NLQEELMQIWEE---HRVTVLMVTHD------VDEAL----LLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHHHHh---cCCEEEEEeCC------HHHHH----HhcCEEEEEeCCcEe
Confidence 555777766542 24567776641 22222 222356666666654
No 110
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=2.5e-20 Score=186.92 Aligned_cols=182 Identities=19% Similarity=0.154 Sum_probs=126.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--hh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--HA 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~~ 466 (621)
.+|+++||++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++|++.|... +.
T Consensus 19 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 58999999999999 99999999999999999999999999999999886541 3888888762 22
Q ss_pred hhc------ccceeecCCCCCHH--HH-HHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 467 RRL------QVPIFEKGYEKDPA--IV-AKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 467 ~~L------~v~l~~~~~~~d~~--~i-a~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
..+ .............. .. +.++++.+... . .+..+..+|||++|++.|+++|. .+|+++|| |
T Consensus 97 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-D 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA-----LNPKLLIA-D 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh-----cCCCEEEe-c
Confidence 112 11110001111111 11 12344444432 1 25667889999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+|||+..+ ..+.+.+..+... .+.++|++|.- .-. +....-.|+++..|+-+
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~---~~~tii~~sH~------~~~----~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 171 EPTSALDVSVQ-AQILDLLKKLQEE---LGLTLLFITHD------LGV----VAKIADRVAVMYAGKIV 225 (228)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHH---cCCEEEEEeCC------HHH----HHHhcCeEEEEeCCEEE
Confidence 99999999886 4666777777542 14566776652 111 22233467777777643
No 111
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=193.57 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=126.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT---- 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~---- 464 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. ++|++.|...
T Consensus 14 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 358999999999999 99999999999999999999999999999999987641 3889988642
Q ss_pred ---hhhhcccceeecCCCCCHH---HHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 465 ---HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 465 ---~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
..+++.... ..++.... ..+.++++.+...++ +..+..+||||+|++.|+++|+ .+|+++|| |||
T Consensus 92 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~-----~~p~lllL-DEP 163 (271)
T PRK13638 92 YTDIDSDIAFSL--RNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALV-----LQARYLLL-DEP 163 (271)
T ss_pred cccHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCC
Confidence 111221111 11122222 223344554444332 5567889999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|||+..+. .+.+.|..+... +.++|++|.- ... +....-.|+.+..|+-+
T Consensus 164 t~~LD~~~~~-~l~~~l~~~~~~----g~tii~vtH~------~~~----~~~~~d~i~~l~~G~i~ 215 (271)
T PRK13638 164 TAGLDPAGRT-QMIAIIRRIVAQ----GNHVIISSHD------IDL----IYEISDAVYVLRQGQIL 215 (271)
T ss_pred cccCCHHHHH-HHHHHHHHHHHC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 9999998864 555777777542 4566776642 111 22233356666666644
No 112
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.84 E-value=2.1e-20 Score=184.86 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=118.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|++|+|.+.+.++. +++++.|...+...+.
T Consensus 13 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGE--ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 357999999999999 99999999999999999999999999999999987752 3788877543322221
Q ss_pred ---cceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 471 ---VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 471 ---v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+.++... .....+.++++.+...++ +..+..+|||++|++.++++|+ .+|+++|| ||||+|+|+..+
T Consensus 91 ~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~~LD~~~~ 161 (201)
T cd03231 91 LENLRFWHAD---HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLL-----SGRPLWIL-DEPTTALDKAGV 161 (201)
T ss_pred HHHHHhhccc---ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCCCCCHHHH
Confidence 1111110 112334455555544332 5667889999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.+.+..+... +.+.|++|.
T Consensus 162 -~~l~~~l~~~~~~----g~tiii~sH 183 (201)
T cd03231 162 -ARFAEAMAGHCAR----GGMVVLTTH 183 (201)
T ss_pred -HHHHHHHHHHHhC----CCEEEEEec
Confidence 4566777766542 456777776
No 113
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.2e-20 Score=195.00 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=129.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhh--hh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLR--TH 465 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~--~~ 465 (621)
.+|+++||++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. ++|+++|.. .+
T Consensus 20 ~~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 58999999999999 99999999999999999999999999999999987641 389999864 11
Q ss_pred -----hhhcccceeecCCCCCH---HHHHHHHHHHHhhc-CC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 466 -----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 466 -----~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
.+++. +....++... ...+.++++.+.+. .+ +..+..+|||++|++.||++|+ .+|+++|| |
T Consensus 98 ~~~tv~~~l~--~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~-----~~p~illL-D 169 (288)
T PRK13643 98 FEETVLKDVA--FGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA-----MEPEVLVL-D 169 (288)
T ss_pred ccchHHHHHH--hHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-E
Confidence 22221 1111111122 22344555555543 22 5677889999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+|||+..+ ..|.+.|..+... +.+++++|.- .. .+....-.|+.+..|+-+
T Consensus 170 EPt~gLD~~~~-~~l~~~l~~l~~~----g~til~vtHd------~~----~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 170 EPTAGLDPKAR-IEMMQLFESIHQS----GQTVVLVTHL------MD----DVADYADYVYLLEKGHII 223 (288)
T ss_pred CCccCCCHHHH-HHHHHHHHHHHHC----CCEEEEEecC------HH----HHHHhCCEEEEEECCEEE
Confidence 99999999886 4555777777542 5677777752 11 122333366666666654
No 114
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.1e-20 Score=184.56 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=125.9
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhh------hccc
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHAR------RLQV 471 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~------~L~v 471 (621)
++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|++.|...+.. ++..
T Consensus 16 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGE--ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 8999999999 99999999999999999999999999999999987652 4899998754332 2222
Q ss_pred ceeecCC-CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 472 PIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 472 ~l~~~~~-~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
....... .......+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+|+..+ ..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~-----~~p~llll-DEP~~~LD~~~~-~~ 166 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLV-----RDKPVLLL-DEPFAALDPALR-AE 166 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHHHH-HH
Confidence 1111000 1112233445555544433 25567789999999999999999 99999999 999999999987 45
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+.+.+..+... .+.+++++|.-- ..+. ...-.|..+..|+-+
T Consensus 167 l~~~l~~~~~~---~~~tii~~sH~~------~~~~----~~~d~i~~l~~G~i~ 208 (211)
T cd03298 167 MLDLVLDLHAE---TKMTVLMVTHQP------EDAK----RLAQRVVFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHHh---cCCEEEEEecCH------HHHH----hhhCEEEEEECCEEe
Confidence 55777766532 256677776522 1222 222367777777643
No 115
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=4.2e-20 Score=185.61 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=126.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH-----hhcCcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-----~~~~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++ .|.+|+|.+.+.++. ++|+++|...
T Consensus 14 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 91 (227)
T cd03260 14 HALKDISLDIPKGE--ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN 91 (227)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch
Confidence 58999999999999 99999999999999999999999 899999999987641 3889998764
Q ss_pred hh-----hhcccceeecCCCCC--HHHHHHHHHHHHhhcCC-Ccc--ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 465 HA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRNGS-DVV--LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 465 ~~-----~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~~~-d~v--liDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+. +++.......+.... ....+.++++.+..... +.. ...+||||+|++.|+++|+ .+|+++||
T Consensus 92 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll- 165 (227)
T cd03260 92 PFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA-----NEPEVLLL- 165 (227)
T ss_pred hccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 33 222111110111111 12233445555444332 333 4789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.+. .++|++|. | ...+ ....-.|+++..|+-+
T Consensus 166 DEPt~~LD~~~~~-~l~~~l~~~~~~-----~tii~~sH-~-----~~~~----~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 166 DEPTSALDPISTA-KIEELIAELKKE-----YTIVIVTH-N-----MQQA----ARVADRTAFLLNGRLV 219 (227)
T ss_pred eCCCccCCHHHHH-HHHHHHHHHhhC-----cEEEEEec-c-----HHHH----HHhCCEEEEEeCCEEE
Confidence 9999999998874 555777776542 45666654 2 2222 2333477888888754
No 116
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.9e-20 Score=190.84 Aligned_cols=160 Identities=20% Similarity=0.239 Sum_probs=118.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----eeeeeehhhhhhh------hc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHAR------RL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----RigaveQl~~~~~------~L 469 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|++.|...+.. ++
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l 91 (255)
T PRK11248 14 KPALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNV 91 (255)
T ss_pred eeeEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHH
Confidence 358999999999999 99999999999999999999999999999999987752 4788988753322 22
Q ss_pred ccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 470 QVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 470 ~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
..... ..+... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+..
T Consensus 92 ~~~~~--~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~-----~~p~lllL-DEPt~~LD~~~ 163 (255)
T PRK11248 92 AFGLQ--LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALA-----ANPQLLLL-DEPFGALDAFT 163 (255)
T ss_pred HhHHH--HcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHHH
Confidence 11111 011111 123344455444332 25567889999999999999999 99999999 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+ ..+.+.|..+... .+.++|++|.
T Consensus 164 ~-~~l~~~L~~~~~~---~g~tviivsH 187 (255)
T PRK11248 164 R-EQMQTLLLKLWQE---TGKQVLLITH 187 (255)
T ss_pred H-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 6 4566777776432 2556777765
No 117
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.8e-20 Score=194.77 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=121.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh--h----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H---- 465 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~--~---- 465 (621)
.+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. ++|+++|... +
T Consensus 21 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 21 YTLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 48999999999999 99999999999999999999999999999999997752 4899999642 1
Q ss_pred -hhhcccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 466 -ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 466 -~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
.+++.... ...+.+. ...+.++++.+++.++ +..+..+|||++|++.||++|+ .+|+++|| ||||+|
T Consensus 99 v~eni~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~lLlL-DEPt~~ 170 (279)
T PRK13650 99 VEDDVAFGL--ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA-----MRPKIIIL-DEATSM 170 (279)
T ss_pred HHHHHHhhH--HhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCccc
Confidence 22221111 1112222 2334555665555443 6677899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+..+ ..|.+.+..+... .+.+++++|.
T Consensus 171 LD~~~~-~~l~~~l~~l~~~---~g~tilivtH 199 (279)
T PRK13650 171 LDPEGR-LELIKTIKGIRDD---YQMTVISITH 199 (279)
T ss_pred CCHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 999876 4555777777542 2667788775
No 118
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.8e-20 Score=194.88 Aligned_cols=160 Identities=18% Similarity=0.157 Sum_probs=120.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh------
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------ 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~------ 464 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++|+++|...
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 358999999999999 99999999999999999999999999999999997752 4899998641
Q ss_pred -hhhhcccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 465 -HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 465 -~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
..+++.... ...+.... ..+.++++.+.+.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 98 tv~enl~~~~--~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGL--ENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA-----LQPDIIIL-DEATS 169 (279)
T ss_pred cHHHHHhhhH--hhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 222222111 11111221 23344555444433 35677889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+. .+.+.|..+... .+.+++++|.
T Consensus 170 gLD~~~~~-~l~~~l~~l~~~---~~~tilivsH 199 (279)
T PRK13635 170 MLDPRGRR-EVLETVRQLKEQ---KGITVLSITH 199 (279)
T ss_pred cCCHHHHH-HHHHHHHHHHHc---CCCEEEEEec
Confidence 99999874 555777777642 2677788775
No 119
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.3e-20 Score=196.60 Aligned_cols=179 Identities=19% Similarity=0.190 Sum_probs=128.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------------------------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------------------- 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------------------------- 453 (621)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.+.
T Consensus 21 ~~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (305)
T PRK13651 21 KALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIK 98 (305)
T ss_pred cceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccc
Confidence 58999999999999 9999999999999999999999999999999975431
Q ss_pred ------ceeeeeehhh-------hhhhhcccceeecCCCCCH---HHHHHHHHHHHhhc-C-CCccccccchhHHhHHHH
Q 007024 454 ------FRSGAVEQLR-------THARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPL 515 (621)
Q Consensus 454 ------~RigaveQl~-------~~~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~L 515 (621)
.++|+++|.. +..+++..... .++... ...+.++++.+++. . .+..+.++||||+|++.|
T Consensus 99 ~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~--~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 99 KIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPV--SMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred hHHHHHhceEEEeeCcccccccccHHHHHHhhHH--HcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 1389999853 12222221111 112222 23345556655553 2 366788999999999999
Q ss_pred HHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcE
Q 007024 516 MRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPV 595 (621)
Q Consensus 516 araL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI 595 (621)
|++|+ .+|+++|| ||||+|||+..+ ..+.+.|..+... +.++|++|.--. . +....-.|
T Consensus 177 A~aL~-----~~P~lLlL-DEPt~~LD~~~~-~~l~~~l~~l~~~----g~tiiivtHd~~------~----~~~~adrv 235 (305)
T PRK13651 177 AGILA-----MEPDFLVF-DEPTAGLDPQGV-KEILEIFDNLNKQ----GKTIILVTHDLD------N----VLEWTKRT 235 (305)
T ss_pred HHHHH-----hCCCEEEE-eCCCCCCCHHHH-HHHHHHHHHHHHC----CCEEEEEeeCHH------H----HHHhCCEE
Confidence 99999 99999999 999999999876 4555777777532 667777775211 1 22333366
Q ss_pred EEEecCCCC
Q 007024 596 MFVGCGQSY 604 (621)
Q Consensus 596 ~fvg~Gq~v 604 (621)
+.+..|+.+
T Consensus 236 ~vl~~G~i~ 244 (305)
T PRK13651 236 IFFKDGKII 244 (305)
T ss_pred EEEECCEEE
Confidence 666666654
No 120
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4.7e-20 Score=186.01 Aligned_cols=183 Identities=20% Similarity=0.151 Sum_probs=129.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARR 468 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~~ 468 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++++.|...+...
T Consensus 19 ~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 68999999999999 99999999999999999999999999999999987641 37888887543322
Q ss_pred cc----cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 469 LQ----VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 469 L~----v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+. +.+....++... ...+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL-DEP~~~ 170 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA-----NNPKVLLC-DEATSA 170 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCCCc
Confidence 21 111000111111 223444555544433 25667789999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+|+..+ ..|.+.+..+... .+.++|++|.-. -. +....--++++-.|+-+.
T Consensus 171 LD~~~~-~~l~~~l~~~~~~---~~~tvii~sH~~------~~----~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 171 LDPETT-QSILALLRDINRE---LGLTIVLITHEM------EV----VKRICDRVAVMEKGEVVE 221 (233)
T ss_pred CCHHHH-HHHHHHHHHHHHH---cCCEEEEEeCCH------HH----HHHhCCEEEEEECCEEEE
Confidence 999986 4555777776542 245677776521 11 223334677777777653
No 121
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.83 E-value=4.2e-20 Score=199.75 Aligned_cols=185 Identities=18% Similarity=0.181 Sum_probs=134.9
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc----cc-------------ceeeeee
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC----DT-------------FRSGAVE 460 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~----Dt-------------~Rigave 460 (621)
....+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. |+ .++|+++
T Consensus 35 g~~~~l~~vsf~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 34668999999999999 99999999999999999999999999999999874 32 1489999
Q ss_pred hhhhhhhh------cccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 461 QLRTHARR------LQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 461 Ql~~~~~~------L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
|...+... +...+...+... .....+.++++.+++.++ +..+.++||||+|++.|+|+|+ .+|+++|
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa-----~~P~ILL 187 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFA-----MDADILL 187 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 97644332 222211111111 112344556666555443 6778899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||+|||+..+. .+.+.|..+... .+.+++++|.- .. .+...+-.|.++-.|+.+
T Consensus 188 l-DEPts~LD~~~r~-~l~~~L~~l~~~---~~~TII~iTHd------l~----e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 188 M-DEPFSALDPLIRT-QLQDELLELQAK---LNKTIIFVSHD------LD----EALKIGNRIAIMEGGRII 244 (382)
T ss_pred E-ECCCccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeCC------HH----HHHHhCCEEEEEECCEEE
Confidence 9 9999999999875 444666666542 35677887752 11 233445578888888765
No 122
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.9e-20 Score=200.08 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=122.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ceeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FRSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~RigaveQl~~~~~~L--- 469 (621)
..+|++++|++.+|+ +++|+|||||||||||++|||++.|+.|+|.+.+.++ .++|+++|...+...+
T Consensus 32 ~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 32 QHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 358999999999999 9999999999999999999999999999999999775 2499999986544433
Q ss_pred ---ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 ---QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ---~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
..++....... .....+.++++.+.+.++ +..+..+|||++||++|+|+|+ .+|+++|| |||+++||..
T Consensus 110 eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~-----~~P~lLLL-DEP~s~LD~~ 183 (377)
T PRK11607 110 QNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA-----KRPKLLLL-DEPMGALDKK 183 (377)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHH
Confidence 22221111111 112234455555555443 6677889999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+. .+.+.+..+... .+++.|++|.
T Consensus 184 ~r~-~l~~~l~~l~~~---~g~tii~vTH 208 (377)
T PRK11607 184 LRD-RMQLEVVDILER---VGVTCVMVTH 208 (377)
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcC
Confidence 864 444555555432 3678888875
No 123
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.83 E-value=2.8e-20 Score=192.29 Aligned_cols=161 Identities=17% Similarity=0.296 Sum_probs=118.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhh-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHA- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~- 466 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 20 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 20 RCIFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 458999999999999 99999999999999999999999999999999986541 388888875332
Q ss_pred -----hhcccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 467 -----RRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 467 -----~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
+++...+... ...+. ...+.++++.++..+ .+..+..+||||+|++.||++|+ .+|+++|| |||
T Consensus 98 ~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEP 170 (269)
T PRK11831 98 DMNVFDNVAYPLREH-TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA-----LEPDLIMF-DEP 170 (269)
T ss_pred CCCHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 2222211110 01111 122334444444433 25667889999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+|||+..+ ..+.+.+..+... .+.++|++|.
T Consensus 171 t~~LD~~~~-~~l~~~l~~~~~~---~g~tiiivsH 202 (269)
T PRK11831 171 FVGQDPITM-GVLVKLISELNSA---LGVTCVVVSH 202 (269)
T ss_pred CccCCHHHH-HHHHHHHHHHHHh---cCcEEEEEec
Confidence 999999886 4555777776542 2456777765
No 124
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.3e-20 Score=198.40 Aligned_cols=183 Identities=18% Similarity=0.166 Sum_probs=131.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~ 465 (621)
..+|++|+|++.+|+ +++|+|+||||||||++.|+|++.++.|+|.+.+.|+. ++|+++|... +
T Consensus 28 ~~~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 568999999999999 99999999999999999999999999999999998751 3899999752 2
Q ss_pred hh------hcccceee-cCCCC-CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 466 AR------RLQVPIFE-KGYEK-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 466 ~~------~L~v~l~~-~~~~~-d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
.. ++..++.. ..... .....+.++++.+++. .++..+..+||||+||+.||++|+ .+|+++|+ |
T Consensus 106 ~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~-----~~P~lLil-D 179 (327)
T PRK11308 106 NPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM-----LDPDVVVA-D 179 (327)
T ss_pred CCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH-----cCCCEEEE-E
Confidence 11 21111111 01111 1123345555555442 246677899999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||++||...+...+ +.|..+.+. .+.+.+++|. ....+..+ .-.|+.+-.|+-+
T Consensus 180 EPts~LD~~~~~~i~-~lL~~l~~~---~g~til~iTH------dl~~~~~~----adrv~vm~~G~iv 234 (327)
T PRK11308 180 EPVSALDVSVQAQVL-NLMMDLQQE---LGLSYVFISH------DLSVVEHI----ADEVMVMYLGRCV 234 (327)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEeC------CHHHHHHh----CCEEEEEECCEEE
Confidence 999999999885444 666666543 3677888774 22333333 3366777777665
No 125
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.3e-20 Score=192.63 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=119.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT------- 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~------- 464 (621)
.+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|++|+|.+.+.++. ++|++.|...
T Consensus 18 ~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 18 EALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred ceeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 48999999999999 99999999999999999999999999999999987642 3888888642
Q ss_pred hhhhcccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 465 HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 465 ~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
..+++.... .....+.. ..+.++++.+.+.. .+..+.++|||++|++.|+++|. .+|+++|| ||||+|
T Consensus 96 v~~~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~-----~~p~llil-DEPt~g 167 (277)
T PRK13652 96 VEQDIAFGP--INLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIA-----MEPQVLVL-DEPTAG 167 (277)
T ss_pred HHHHHHhHH--HHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccc
Confidence 122222111 11112222 23344555544433 36677899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+..+ ..|.+.+..+... .+.+++++|.
T Consensus 168 LD~~~~-~~l~~~l~~l~~~---~g~tvli~tH 196 (277)
T PRK13652 168 LDPQGV-KELIDFLNDLPET---YGMTVIFSTH 196 (277)
T ss_pred CCHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 999886 4666777777643 2566777765
No 126
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=3.8e-20 Score=192.77 Aligned_cols=162 Identities=15% Similarity=0.135 Sum_probs=119.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------ceeeeeehhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT---- 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------~RigaveQl~~---- 464 (621)
..+|+++||++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.++ .++|+++|...
T Consensus 19 ~~~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 19 THALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 358999999999999 9999999999999999999999999999999999765 13899998641
Q ss_pred ---hhhhcccceeecCCCCC-HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 465 ---HARRLQVPIFEKGYEKD-PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 465 ---~~~~L~v~l~~~~~~~d-~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
..+++.......+.... ....+.++++.+++.. .+..+.++||||+|++.|+++|+ .+|+++|| ||||+
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~-----~~p~lLil-DEPt~ 170 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEPKVLVL-DEPTA 170 (283)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 12222111110111111 1123444555544433 26778899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+. .|.+.+..+... .+.+++++|.
T Consensus 171 gLD~~~~~-~l~~~l~~l~~~---~g~tillvsH 200 (283)
T PRK13636 171 GLDPMGVS-EIMKLLVEMQKE---LGLTIIIATH 200 (283)
T ss_pred CCCHHHHH-HHHHHHHHHHHh---CCCEEEEEec
Confidence 99999874 555777777542 2566777764
No 127
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.83 E-value=5.6e-20 Score=195.74 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=131.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhh--hh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLR--TH 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~--~~ 465 (621)
..+|++|||++.+|+ +++|+|+||||||||++.|+|++.|++|+|.+.|.++. ++++++|.. .+
T Consensus 34 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 568999999999999 99999999999999999999999999999999998751 489999975 22
Q ss_pred hhhc------ccceeecCCCCCH---HHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ARRL------QVPIFEKGYEKDP---AIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ~~~L------~v~l~~~~~~~d~---~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
...+ ..++......... ...+.++++.+.+. ..+..+..+||||+||+.||++|+ .+|+++|+
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~-----~~P~llil- 185 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI-----LEPKLIIC- 185 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2122 1111110001121 23344555555442 136677899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||...+.+.+ +.|..+.+. .+.+.+++|. ....+. ...-.|+++-.|+-+
T Consensus 186 DEPts~LD~~~~~~i~-~lL~~l~~~---~~~til~iTH------dl~~~~----~~~dri~vl~~G~iv 241 (331)
T PRK15079 186 DEPVSALDVSIQAQVV-NLLQQLQRE---MGLSLIFIAH------DLAVVK----HISDRVLVMYLGHAV 241 (331)
T ss_pred eCCCccCCHHHHHHHH-HHHHHHHHH---cCCEEEEEeC------CHHHHH----HhCCEEEEEECCEEE
Confidence 9999999999886444 667666542 3667888774 222333 233467777777665
No 128
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.9e-20 Score=197.50 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh----cCcEEEEcccccc-------------eeeeeehh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDTF-------------RSGAVEQL 462 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~----~~GkV~I~~~Dt~-------------RigaveQl 462 (621)
..+|+||||++.+|+ +++|+|+||||||||++.|+|++.+ ++|+|.+.+.|+. ++++++|.
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 20 FRAVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQD 97 (326)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 468999999999999 9999999999999999999999873 7899999998752 38999997
Q ss_pred hh--hhhhccc------ceeecCCCCC---HHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 463 RT--HARRLQV------PIFEKGYEKD---PAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 463 ~~--~~~~L~v------~l~~~~~~~d---~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
.. +...+.+ .+. ...+.. ....+.++++.+.+.+ .+..+..+||||+||+.||++|+ .+
T Consensus 98 ~~~~l~p~~~v~~~i~~~l~-~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~-----~~ 171 (326)
T PRK11022 98 PMTSLNPCYTVGFQIMEAIK-VHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA-----CR 171 (326)
T ss_pred chhhcCCcCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH-----hC
Confidence 53 2222211 110 011111 2234455555555432 24567899999999999999999 99
Q ss_pred CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 528 PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+++|+ ||||+|||+..+.+.+ +.|..+.+. .+.+.|++|. ....+. ...-.|+.+-.|+-+
T Consensus 172 P~llil-DEPts~LD~~~~~~il-~lL~~l~~~---~g~til~iTH------dl~~~~----~~adri~vm~~G~iv 233 (326)
T PRK11022 172 PKLLIA-DEPTTALDVTIQAQII-ELLLELQQK---ENMALVLITH------DLALVA----EAAHKIIVMYAGQVV 233 (326)
T ss_pred CCEEEE-eCCCCCCCHHHHHHHH-HHHHHHHHh---cCCEEEEEeC------CHHHHH----HhCCEEEEEECCEEE
Confidence 999999 9999999999886444 667666542 3677888774 222222 233367777777765
No 129
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=4.6e-20 Score=176.46 Aligned_cols=183 Identities=21% Similarity=0.256 Sum_probs=136.5
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------------------ce
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------------------FR 455 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------------------~R 455 (621)
....+|++||+....|. +|.|||.+||||||+|+||..+..|+.|.|.+.+..+ .|
T Consensus 17 G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~ 94 (256)
T COG4598 17 GEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94 (256)
T ss_pred ccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHH
Confidence 45689999999999999 9999999999999999999999999999999988654 24
Q ss_pred eeeeehhhhhhhhc-------ccceeecCCCCC-HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcC
Q 007024 456 SGAVEQLRTHARRL-------QVPIFEKGYEKD-PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 456 igaveQl~~~~~~L-------~v~l~~~~~~~d-~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~ 526 (621)
.|.|+|...+...+ ..|+...+..+. +.+.+...+...+..+ .+..+..+|||+|||++|||+|+ .
T Consensus 95 L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLa-----m 169 (256)
T COG4598 95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALA-----M 169 (256)
T ss_pred hhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHh-----c
Confidence 77777765433322 234433333322 2233444444444332 36788999999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
+|+++|| ||||++|||.-.-+.+ +.++++++.+ -+.+++|. ..+.+ ....--|+|+-.|..
T Consensus 170 eP~vmLF-DEPTSALDPElVgEVL-kv~~~LAeEg----rTMv~VTH------EM~FA----R~Vss~v~fLh~G~i 230 (256)
T COG4598 170 EPEVMLF-DEPTSALDPELVGEVL-KVMQDLAEEG----RTMVVVTH------EMGFA----RDVSSHVIFLHQGKI 230 (256)
T ss_pred CCceEee-cCCcccCCHHHHHHHH-HHHHHHHHhC----CeEEEEee------ehhHH----HhhhhheEEeeccee
Confidence 9999999 9999999998765555 7888998874 55677774 33333 344447899988864
No 130
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.6e-20 Score=190.15 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=129.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++++|.+.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++++++|...+
T Consensus 24 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 24 RTLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 358999999999999 99999999999999999999999999999999987652 38888886432
Q ss_pred -hhhcccceeec-C----CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 466 -ARRLQVPIFEK-G----YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 466 -~~~L~v~l~~~-~----~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+++....... . ........+.++++.+.... .+..+.++|||++|++.|+++|+ .+|+++|| ||||
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~lllL-DEPt 175 (265)
T PRK10575 102 VRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA-----QDSRCLLL-DEPT 175 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 22222211100 0 00111223444555544433 36677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+ ..|.+.|..+... .+.++|++|.-- -. +....-.|+++..|+-+
T Consensus 176 ~~LD~~~~-~~~~~~l~~l~~~---~~~tiii~sH~~------~~----i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 176 SALDIAHQ-VDVLALVHRLSQE---RGLTVIAVLHDI------NM----AARYCDYLVALRGGEMI 227 (265)
T ss_pred ccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeCCH------HH----HHHhCCEEEEEECCeEE
Confidence 99999986 4555777777542 245677776521 11 22233367777777754
No 131
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=4.5e-20 Score=191.57 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=117.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhh--hh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLR--TH 465 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~--~~ 465 (621)
.+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++ .+++++.|.. .+
T Consensus 21 ~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 21 RALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred ceeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 58999999999999 9999999999999999999999999999999988653 1388999864 11
Q ss_pred -----hhhcccceeecCCCCCH---HHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 466 -----ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 466 -----~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
.+++.... ..+.... ...+.++++.+.+. . .+..+..+|||++|++.|+++|+ .+|+++|| |
T Consensus 99 ~~~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-D 170 (280)
T PRK13649 99 FEETVLKDVAFGP--QNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA-----MEPKILVL-D 170 (280)
T ss_pred ccccHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-e
Confidence 12221111 1111112 12334455554443 2 35667889999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+|||+..+ ..+.+.|..+... +.++|++|.
T Consensus 171 EPt~~LD~~~~-~~l~~~l~~~~~~----~~tiiivsH 203 (280)
T PRK13649 171 EPTAGLDPKGR-KELMTLFKKLHQS----GMTIVLVTH 203 (280)
T ss_pred CCcccCCHHHH-HHHHHHHHHHHHC----CCEEEEEec
Confidence 99999999886 4566777776532 556777764
No 132
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=4.4e-20 Score=184.36 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=118.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------eeeeeehhhhhhhhcc----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRLQ---- 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------RigaveQl~~~~~~L~---- 470 (621)
.+++++||.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.
T Consensus 25 ~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~ 102 (214)
T PRK13543 25 PVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLEN 102 (214)
T ss_pred eeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHHH
Confidence 58999999999999 99999999999999999999999999999999987642 2788887643322221
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 471 VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 471 v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+.+....++......+.+++..+.... .+..+..+|||++|++.|+++|+ .+|+++|+ ||||+++|+..+ +.
T Consensus 103 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD~~~~-~~ 175 (214)
T PRK13543 103 LHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL-----SPAPLWLL-DEPYANLDLEGI-TL 175 (214)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-HH
Confidence 111101111222233445555544432 36777899999999999999999 99999999 999999999986 46
Q ss_pred HHHHHHHhhcCCCCCCceEEEecc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.+..+.+. +.++|++|.
T Consensus 176 l~~~l~~~~~~----~~tiii~sH 195 (214)
T PRK13543 176 VNRMISAHLRG----GGAALVTTH 195 (214)
T ss_pred HHHHHHHHHhC----CCEEEEEec
Confidence 66778777543 446666664
No 133
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.83 E-value=5.6e-20 Score=187.37 Aligned_cols=180 Identities=17% Similarity=0.157 Sum_probs=126.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------------eeeeeehhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------------RSGAVEQLR 463 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------------RigaveQl~ 463 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++|++.|..
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 17 TVLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 58999999999999 99999999999999999999999999999999875431 378888865
Q ss_pred hhh------hhcccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 THA------RRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~~~------~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+. +++..... ....... ...+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 95 ~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~-----~~p~lllL 168 (250)
T PRK11264 95 NLFPHRTVLENIIEGPV-IVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA-----MRPEVILF 168 (250)
T ss_pred ccCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh-----cCCCEEEE
Confidence 332 22211100 0011111 123344455444433 25567889999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.|..+... +.++|++|.- ...+. ...-.|+++..|+-+
T Consensus 169 -DEPt~~LD~~~~-~~l~~~l~~~~~~----~~tvi~~tH~------~~~~~----~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 169 -DEPTSALDPELV-GEVLNTIRQLAQE----KRTMVIVTHE------MSFAR----DVADRAIFMDQGRIV 223 (250)
T ss_pred -eCCCccCCHHHH-HHHHHHHHHHHhc----CCEEEEEeCC------HHHHH----HhcCEEEEEECCEEE
Confidence 999999999876 4555777777542 5567776642 22222 223367777777654
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.83 E-value=5.1e-20 Score=184.70 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=129.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----ceeeeeehhhhhhhhcc----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ---- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----~RigaveQl~~~~~~L~---- 470 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ .++++++|...+...+.
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~ 90 (223)
T TIGR03740 13 QTAVNNISLTVPKNS--VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTAREN 90 (223)
T ss_pred EEEEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHHH
Confidence 358999999999999 9999999999999999999999999999999988654 25788887653322211
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 471 VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 471 v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+.+....++.+ ...+.++++.++... .+..+.++|||++|++.|+++|+ .+|+++|+ ||||+|+|+..+ ..
T Consensus 91 ~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p~llll-DEP~~~LD~~~~-~~ 162 (223)
T TIGR03740 91 LKVHTTLLGLP-DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL-----NHPKLLIL-DEPTNGLDPIGI-QE 162 (223)
T ss_pred HHHHHHHcCCC-HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCccCCCHHHH-HH
Confidence 11111111112 223445555544433 25667889999999999999999 99999999 999999999986 46
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|.+.|..+... +.+++++|.- ...+ ....-.|+.+..|+-+
T Consensus 163 l~~~L~~~~~~----~~tiii~sH~------~~~~----~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 163 LRELIRSFPEQ----GITVILSSHI------LSEV----QQLADHIGIISEGVLG 203 (223)
T ss_pred HHHHHHHHHHC----CCEEEEEcCC------HHHH----HHhcCEEEEEeCCEEE
Confidence 66788777542 4567776652 2222 2233477777777754
No 135
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.6e-20 Score=186.52 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=127.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~~~L 469 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++ .+++++.|...+...+
T Consensus 16 ~~~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 16 RRVVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 358999999999999 9999999999999999999999999999999998664 1388888875433222
Q ss_pred c----cceeecCC-CCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 470 Q----VPIFEKGY-EKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 470 ~----v~l~~~~~-~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
. +.+..... ..+. ...+.++++.+..... +..+..+|||++|++.|+++|. .+|+++|| ||||+|
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~ 167 (241)
T PRK10895 94 SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALA-----ANPKFILL-DEPFAG 167 (241)
T ss_pred cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccc
Confidence 1 11111101 1111 1233444444333222 4567789999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+..+ ..+.+.+..+... +.+.+++|.- ...+. ...-.|+++..|+-+
T Consensus 168 LD~~~~-~~l~~~l~~~~~~----g~tiii~sH~------~~~~~----~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 168 VDPISV-IDIKRIIEHLRDS----GLGVLITDHN------VRETL----AVCERAYIVSQGHLI 216 (241)
T ss_pred CCHHHH-HHHHHHHHHHHhc----CCEEEEEEcC------HHHHH----HhcCEEEEEeCCeEE
Confidence 999876 4555777776542 4567777652 11222 223367777777754
No 136
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=3.1e-20 Score=188.62 Aligned_cols=183 Identities=15% Similarity=0.199 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhcc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~ 470 (621)
..+|+++||++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. ++++++|...+...+.
T Consensus 14 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 358999999999999 99999999999999999999999999999999987642 3788888753332221
Q ss_pred ----cceeecCCCCCH---HHHHHHHHHHHhhcC---CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 471 ----VPIFEKGYEKDP---AIVAKEAIQEATRNG---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 471 ----v~l~~~~~~~d~---~~ia~~al~~~~~~~---~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+.+.....+.+. ...+.++++.+.... .+..+..+||||+|++.||++|. .+|+++|| ||||+|
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~ 165 (242)
T cd03295 92 VEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA-----ADPPLLLM-DEPFGA 165 (242)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEe-cCCccc
Confidence 111111111111 223445555555442 25667889999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+..+ ..+.+.|..+... .+.++|++|.- ...+. ...--|+.+-.|.-+
T Consensus 166 LD~~~~-~~l~~~L~~~~~~---~g~tvii~sH~------~~~~~----~~~d~i~~l~~G~i~ 215 (242)
T cd03295 166 LDPITR-DQLQEEFKRLQQE---LGKTIVFVTHD------IDEAF----RLADRIAIMKNGEIV 215 (242)
T ss_pred CCHHHH-HHHHHHHHHHHHH---cCCEEEEEecC------HHHHH----HhCCEEEEEECCEEE
Confidence 999876 4566777776542 24567777642 22222 222366677777654
No 137
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.82 E-value=5.5e-20 Score=186.47 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=128.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhhhhh-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHAR- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~~~~- 467 (621)
..+|+++||++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. +++++.|...+..
T Consensus 14 ~~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 358999999999999 99999999999999999999999999999999987642 3788888653322
Q ss_pred -----hcccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 -----RLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 -----~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
++...... ..+.+. ...+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++|| ||||
T Consensus 92 ~tv~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLR-VRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALA-----VKPKLMLF-DEPT 164 (240)
T ss_pred CcHHHHHHhHHHH-hcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 22111100 011111 123344454443332 25667789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+|+..+ ..+.+.+..+.+. +.++|++|.- .-. +....-.|+++..|+-+
T Consensus 165 ~~LD~~~~-~~l~~~l~~~~~~----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 165 SALDPELR-HEVLKVMQDLAEE----GMTMVIVTHE------IGF----AEKVASRLIFIDKGRIA 215 (240)
T ss_pred ccCCHHHH-HHHHHHHHHHHHc----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 99999886 4566777777542 4567776642 111 22333467777777654
No 138
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=4.8e-20 Score=188.78 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=129.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhcc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~ 470 (621)
..+|+++||++.+|+ +++|+|+||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 15 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 15 KRILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred EEEEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 358999999999999 99999999999999999999999999999999986641 3888888754332221
Q ss_pred ----cceeec----CCC---CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 471 ----VPIFEK----GYE---KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 471 ----v~l~~~----~~~---~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
+.+... .+. ......+.++++.++... .+..+.++|||++|++.|+++|+ .+|+++|| ||||
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP~ 166 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLA-----QDTPVVLL-DEPT 166 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCc
Confidence 111000 011 111223444555444332 36677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+|+..+ ..+.+.|..+... +.+++++|.- ... +....-.|+++..|.-+
T Consensus 167 ~~LD~~~~-~~l~~~l~~l~~~----~~tiii~tH~------~~~----~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 167 TYLDINHQ-VELMRLMRELNTQ----GKTVVTVLHD------LNQ----ASRYCDHLVVLANGHVM 217 (255)
T ss_pred ccCCHHHH-HHHHHHHHHHHHC----CCEEEEEECC------HHH----HHHhcCEEEEEECCeEE
Confidence 99999886 4566777776542 5567777652 112 22333477777777654
No 139
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.82 E-value=4.7e-20 Score=190.86 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=118.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------eeeeeehhhhhh-------
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHA------- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------RigaveQl~~~~------- 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++++++|...+.
T Consensus 20 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 20 HTALRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred cEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 358999999999999 99999999999999999999999999999999987652 489998875321
Q ss_pred -hhcccceee--cCCC---CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 467 -RRLQVPIFE--KGYE---KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 467 -~~L~v~l~~--~~~~---~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
+++.+..+. .... ......+.++++.++... .+..+.++|||++|++.|+++|. .+|+++|+ ||||+
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~-----~~p~llll-DEPt~ 171 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA-----QQGQVILL-DEPFT 171 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCc
Confidence 111111110 0000 111223344555544433 35677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+ ..+.+.|..+... +.++|++|.
T Consensus 172 ~LD~~~~-~~l~~~L~~~~~~----g~tviivsH 200 (272)
T PRK15056 172 GVDVKTE-ARIISLLRELRDE----GKTMLVSTH 200 (272)
T ss_pred cCCHHHH-HHHHHHHHHHHhC----CCEEEEEeC
Confidence 9999986 4556777777542 456677664
No 140
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=4.6e-20 Score=183.34 Aligned_cols=159 Identities=14% Similarity=0.095 Sum_probs=115.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------eeeeeehhhhhhhhc----c
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSGAVEQLRTHARRL----Q 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------RigaveQl~~~~~~L----~ 470 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.++.|+|.+.+.++. +++++.|...+...+ +
T Consensus 16 ~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~ 93 (207)
T PRK13539 16 VLFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAEN 93 (207)
T ss_pred EEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHHH
Confidence 48999999999999 99999999999999999999999999999999987641 367777543221111 1
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 471 VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 471 v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+.+....+.... ..+.++++.++... .+..+.++|||++|++.|+++|. .+|+++|| ||||+|+|+..+. .
T Consensus 94 l~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~~~~~-~ 165 (207)
T PRK13539 94 LEFWAAFLGGEE-LDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLV-----SNRPIWIL-DEPTAALDAAAVA-L 165 (207)
T ss_pred HHHHHHhcCCcH-HHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-H
Confidence 111111111112 22445555554432 25566789999999999999999 99999999 9999999999874 5
Q ss_pred HHHHHHHhhcCCCCCCceEEEecc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.|..+... +.+++++|.
T Consensus 166 l~~~l~~~~~~----~~tiii~sH 185 (207)
T PRK13539 166 FAELIRAHLAQ----GGIVIAATH 185 (207)
T ss_pred HHHHHHHHHHC----CCEEEEEeC
Confidence 55777766543 455666654
No 141
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.82 E-value=5.2e-20 Score=190.03 Aligned_cols=183 Identities=18% Similarity=0.178 Sum_probs=128.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh--hh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--HA-- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~--~~-- 466 (621)
..+|+++||.+.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.++. ++++++|... +.
T Consensus 26 ~~~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 358999999999999 99999999999999999999999999999999987642 4888888653 11
Q ss_pred ----hhcccceeec-CCCC-CHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 ----RRLQVPIFEK-GYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ----~~L~v~l~~~-~~~~-d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
+++....... .... .....+.++++.+... . .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 104 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt 177 (267)
T PRK15112 104 QRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI-----LRPKVIIA-DEAL 177 (267)
T ss_pred hhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH-----hCCCEEEE-cCCc
Confidence 1221111100 1111 1112334455554442 2 24456789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+ ..+.+.|..+.+. .+.++|++|.- .-. +....-.|+++..|+-+
T Consensus 178 ~~LD~~~~-~~l~~~l~~~~~~---~g~tviivsH~------~~~----~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 178 ASLDMSMR-SQLINLMLELQEK---QGISYIYVTQH------LGM----MKHISDQVLVMHQGEVV 229 (267)
T ss_pred ccCCHHHH-HHHHHHHHHHHHH---cCcEEEEEeCC------HHH----HHHhcCEEEEEECCEEE
Confidence 99999876 4666777777542 25567776642 212 22333467777777654
No 142
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6.6e-20 Score=190.14 Aligned_cols=181 Identities=20% Similarity=0.223 Sum_probs=128.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------ceeeeeehhhh--h--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT--H-- 465 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------~RigaveQl~~--~-- 465 (621)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.+..|+|.+.+.++ .++|++.|... +
T Consensus 16 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 16 EALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 48999999999999 9999999999999999999999999999999998664 13889998741 1
Q ss_pred ---hhhcccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 466 ---ARRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 466 ---~~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
.+++........... .....+.++++.+.+.++ +..+.++||||+|++.|+++|+ .+|+++|| ||||+|
T Consensus 94 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~llll-DEPt~g 167 (275)
T PRK13639 94 PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA-----MKPEIIVL-DEPTSG 167 (275)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcC
Confidence 122211110001111 112334455555555443 6678899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+..+. .+.+.+..+.+. +.+++++|.--+ .+....-.|.++-.|+-+
T Consensus 168 LD~~~~~-~l~~~l~~l~~~----~~til~vtH~~~----------~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 168 LDPMGAS-QIMKLLYDLNKE----GITIIISTHDVD----------LVPVYADKVYVMSDGKII 216 (275)
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEecCHH----------HHHHhCCEEEEEECCEEE
Confidence 9999874 555777776532 566777775211 122233356666666554
No 143
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.82 E-value=1.2e-19 Score=183.16 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=127.2
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh----cCcEEEEccccc-------ceeeeeehhhh--hhhh
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT-------FRSGAVEQLRT--HARR 468 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~----~~GkV~I~~~Dt-------~RigaveQl~~--~~~~ 468 (621)
+|++++|++.+|+ +++|+||||+|||||+++|+|++.| .+|+|.+.+.++ .+++++.|... +...
T Consensus 1 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGE--VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence 4789999999999 9999999999999999999999998 899999998764 14889988763 2222
Q ss_pred ccc----ceeecCCCC---CHHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 469 LQV----PIFEKGYEK---DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 469 L~v----~l~~~~~~~---d~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
+.+ .+.....+. .....+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| |||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~vllL-DEP 152 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALL-----LEPPFLIA-DEP 152 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 211 000000111 11223444555544431 24567789999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|+|+..+ ..+.+.+..+... .+.++|++|.- ... +....-.|+++..|+-+
T Consensus 153 t~~LD~~~~-~~l~~~l~~~~~~---~~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 153 TTDLDVVNQ-ARVLKLLRELRQL---FGTGILLITHD------LGV----VARIADEVAVMDDGRIV 205 (230)
T ss_pred ccccCHHHH-HHHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 999999886 4555777776542 24566776642 111 22333477888887754
No 144
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=6.8e-20 Score=186.70 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=127.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|++++|++.+|+ +++|+|+||||||||++.|+|++.|+ +|+|.+.+.++. ++|+++|...
T Consensus 15 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 15 EALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred eeecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 58999999999999 99999999999999999999999988 999999887642 3888888753
Q ss_pred hh-----hhcccceeecC-CCC-CHHHHHHHHHHHHhhc----C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 465 HA-----RRLQVPIFEKG-YEK-DPAIVAKEAIQEATRN----G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 465 ~~-----~~L~v~l~~~~-~~~-d~~~ia~~al~~~~~~----~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+. +++.+.....+ ... .....+.++++.++.. . .+..+..+||||+|++.|+++|+ .+|+++|
T Consensus 93 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~lll 167 (247)
T TIGR00972 93 PFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA-----VEPEVLL 167 (247)
T ss_pred cCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 32 22221111111 010 1112334455554443 2 35567889999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||+|||+..+. .+.+.|..+.+ ..++|++|. ....+ ....-.|.++..|+-+
T Consensus 168 l-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivsH------~~~~~----~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 168 L-DEPTSALDPIATG-KIEELIQELKK-----KYTIVIVTH------NMQQA----ARISDRTAFFYDGELV 222 (247)
T ss_pred E-eCCcccCCHHHHH-HHHHHHHHHHh-----cCeEEEEec------CHHHH----HHhCCEEEEEECCEEE
Confidence 9 9999999999874 55577777654 245666654 12222 2333467788888754
No 145
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.82 E-value=8.8e-20 Score=188.05 Aligned_cols=183 Identities=19% Similarity=0.164 Sum_probs=129.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~ 465 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|... +
T Consensus 24 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 24 APVLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred eEEeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 458999999999999 99999999999999999999999999999999987642 3889988742 2
Q ss_pred hhhc------ccceee-cCCCC-CHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 466 ARRL------QVPIFE-KGYEK-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 466 ~~~L------~v~l~~-~~~~~-d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
...+ ..+... ..... .....+.++++.+... . .+..+..+||||+|++.|+++|+ .+|+++|| |
T Consensus 102 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~-----~~p~illL-D 175 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALA-----VKPKLIVL-D 175 (265)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2211 111100 01111 1123345555555542 2 25667889999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+|||+..+ ..+.+.|..+... .+.++|++|.- .-.+. ...-.++++..|+.+
T Consensus 176 EPt~~LD~~~~-~~l~~~l~~~~~~---~g~tiiivsH~------~~~~~----~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 176 EAVSNLDMVLQ-AVILELLRKLQQA---FGTAYLFITHD------LRLVQ----SFCQRVAVMDKGQIV 230 (265)
T ss_pred CCcccCCHHHH-HHHHHHHHHHHHh---cCcEEEEEeCC------HHHHH----HHhcEEEEEeCCEEE
Confidence 99999999876 4555777776542 25677777752 11222 223367777777654
No 146
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.1e-20 Score=181.99 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=125.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhc---
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L--- 469 (621)
.+|++++|++.+| +++|+||||||||||++.|+|++.|+.|+|.+.+.++. +++++.|...+...+
T Consensus 14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (211)
T cd03264 14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVR 90 (211)
T ss_pred EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHH
Confidence 5899999999885 89999999999999999999999999999999987642 378888875433222
Q ss_pred ---ccceeecCCC-CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 ---QVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ---~v~l~~~~~~-~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
.......... .+....+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+|+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~ 164 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALV-----GDPSILIV-DEPTAGLDPE 164 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 1111111111 111223344555544332 25677889999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+. .+.+.+..++. ..+++++|. |. .. +....-.++++..|+-
T Consensus 165 ~~~-~l~~~l~~~~~-----~~tii~vsH-~~-----~~----~~~~~d~i~~l~~g~i 207 (211)
T cd03264 165 ERI-RFRNLLSELGE-----DRIVILSTH-IV-----ED----VESLCNQVAVLNKGKL 207 (211)
T ss_pred HHH-HHHHHHHHHhC-----CCEEEEEcC-CH-----HH----HHHhCCEEEEEECCEE
Confidence 874 55577777753 256677664 21 11 2222336777777754
No 147
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.7e-20 Score=191.10 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=119.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhh--h--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT--H-- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~--~-- 465 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 23 ~~vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 358999999999999 99999999999999999999999999999999986641 3889988642 1
Q ss_pred ---hhhcccceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 466 ---ARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 466 ---~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+++... ....+... ...+.++++.+++.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||
T Consensus 101 ~~v~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt 172 (280)
T PRK13633 101 TIVEEDVAFG--PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA-----MRPECIIF-DEPT 172 (280)
T ss_pred ccHHHHHHhh--HhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCc
Confidence 1121111 11111121 233445555554433 35678899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|||+..+. .+.+.|..+.+. .+.+++++|.
T Consensus 173 ~gLD~~~~~-~l~~~l~~l~~~---~g~tillvtH 203 (280)
T PRK13633 173 AMLDPSGRR-EVVNTIKELNKK---YGITIILITH 203 (280)
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 999999874 555777777542 2567777765
No 148
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.82 E-value=8.3e-20 Score=185.24 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=128.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~-- 467 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. +++++.|...+..
T Consensus 15 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 358999999999999 99999999999999999999999999999999987641 3888888653332
Q ss_pred ----hcccceee-c-----CCCCC---HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 468 ----RLQVPIFE-K-----GYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 468 ----~L~v~l~~-~-----~~~~d---~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
++...... . .+... ....+.++++.++... .+..+..+|||++|++.|+++|. .+|+++||
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~-----~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM-----QDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEe
Confidence 22111110 0 00111 1223444555544433 25677889999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.+..+.. +.++|++|.--. .+....-.|+.+..|+-+
T Consensus 168 -DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sH~~~----------~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 168 -DEPVAGMTDEET-EKTAELLKSLAG-----KHSVVVVEHDME----------FVRSIADKVTVLHQGSVL 221 (242)
T ss_pred -cCCccCCCHHHH-HHHHHHHHHHhc-----CCEEEEEECCHH----------HHHHhCCEEEEEECCeEE
Confidence 999999999987 456677877754 346677665211 122333467777777755
No 149
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=6.9e-20 Score=187.24 Aligned_cols=183 Identities=14% Similarity=0.164 Sum_probs=128.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------e--eeeeehhhhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R--SGAVEQLRTHAR-- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------R--igaveQl~~~~~-- 467 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. | +++++|...+..
T Consensus 18 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 18 LLAVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred EEEEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 458999999999999 99999999999999999999999999999999987652 2 666777653322
Q ss_pred ----hccccee--------ecCC-----CC---CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcC
Q 007024 468 ----RLQVPIF--------EKGY-----EK---DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 468 ----~L~v~l~--------~~~~-----~~---d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~ 526 (621)
++..... ...+ .. .....+.++++.++... .+..+..+|||++|++.|+++|. .
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~-----~ 170 (255)
T PRK11300 96 TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMV-----T 170 (255)
T ss_pred cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHh-----c
Confidence 2211100 0000 00 11123344444443332 35677889999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+++|| ||||+|||+..+. .+.+.|..+.+. .+.++|++|.-.. . +....-.|+++..|+-+
T Consensus 171 ~p~llll-DEPt~~LD~~~~~-~l~~~L~~~~~~---~~~tii~~sH~~~------~----~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 171 QPEILML-DEPAAGLNPKETK-ELDELIAELRNE---HNVTVLLIEHDMK------L----VMGISDRIYVVNQGTPL 233 (255)
T ss_pred CCCEEEE-cCCccCCCHHHHH-HHHHHHHHHHhh---cCCEEEEEeCCHH------H----HHHhCCEEEEEECCeEE
Confidence 9999999 9999999999874 555777766542 2567777765221 2 22333477788888765
No 150
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=7.3e-20 Score=191.06 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=116.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------------ceeeeeehhhh--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------FRSGAVEQLRT-- 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------------~RigaveQl~~-- 464 (621)
.+|++++|.+.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++ .++|++.|...
T Consensus 25 ~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 58999999999999 9999999999999999999999999999999988653 13788888641
Q ss_pred -----hhhhcccceeecCCCCCHH---HHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 465 -----HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 465 -----~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
..+++..... ..+.... ..+.++++.+.+. + .+..+..+||||+|++.|+++|+ .+|+++||
T Consensus 103 ~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~lLlL- 174 (289)
T PRK13645 103 LFQETIEKDIAFGPV--NLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIA-----MDGNTLVL- 174 (289)
T ss_pred hhhhHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 2222211111 0111111 2233445544442 2 35667889999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|||+..+ ..+.+.|..+... .+.++|++|.
T Consensus 175 DEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tiiiisH 209 (289)
T PRK13645 175 DEPTGGLDPKGE-EDFINLFERLNKE---YKKRIIMVTH 209 (289)
T ss_pred eCCcccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 999999999987 4555777776542 2556777765
No 151
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.82 E-value=5.1e-20 Score=179.09 Aligned_cols=154 Identities=22% Similarity=0.250 Sum_probs=114.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---------eeeeehhhhhhhhccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQV 471 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---------igaveQl~~~~~~L~v 471 (621)
.+|++++|.+.+|+ +++|+||||+||||+++.|+|++.|+.|+|.+.+.++.+ +++++|
T Consensus 13 ~~l~~~~~~i~~G~--~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q---------- 80 (180)
T cd03214 13 TVLDDLSLSIEAGE--IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ---------- 80 (180)
T ss_pred eeEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH----------
Confidence 58999999999999 999999999999999999999999999999999876522 222222
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
+++.+.... .+..+..+|||++|++.|+|+|+ .+|+++|| ||||+|+|+..+ ..+
T Consensus 81 -----------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~~~~-~~~ 136 (180)
T cd03214 81 -----------------ALELLGLAHLADRPFNELSGGERQRVLLARALA-----QEPPILLL-DEPTSHLDIAHQ-IEL 136 (180)
T ss_pred -----------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHH-HHH
Confidence 222222221 23456789999999999999999 99999999 999999999875 566
Q ss_pred HHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+.+..+... .+.+.|++|.- ...+..+ .-.++++..|+-
T Consensus 137 ~~~l~~~~~~---~~~tiii~sh~------~~~~~~~----~d~~~~l~~g~i 176 (180)
T cd03214 137 LELLRRLARE---RGKTVVMVLHD------LNLAARY----ADRVILLKDGRI 176 (180)
T ss_pred HHHHHHHHHh---cCCEEEEEeCC------HHHHHHh----CCEEEEEECCEE
Confidence 6777777542 14566666641 2222222 236667777754
No 152
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.82 E-value=1e-19 Score=186.95 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=128.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. +++++.|...+.
T Consensus 15 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 15 RTLLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 358999999999999 99999999999999999999999999999999887642 378888865332
Q ss_pred --hhcccceeecCCC-CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcC------CCcEEEEEeC
Q 007024 467 --RRLQVPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGE 536 (621)
Q Consensus 467 --~~L~v~l~~~~~~-~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~------~PdlILLVDE 536 (621)
+++.......... ......+.++++.++... .+..+..+|||++|++.|+++|+ . +|+++|| ||
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~-----~~~~~~~~p~lllL-DE 166 (258)
T PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA-----QLWEPDGPPRWLLL-DE 166 (258)
T ss_pred HHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----cccccCCCCCEEEE-eC
Confidence 2221111100110 111233445555544433 36678899999999999999999 5 7899888 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|||+..+ ..+.+.|..+... .+.++|++|.- . .. +....-.|+++..|+-+
T Consensus 167 Pt~~LD~~~~-~~l~~~l~~~~~~---~~~tiii~sH~-~-----~~----~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 167 PTSALDLAHQ-HHVLRLARQLAHE---RGLAVIVVLHD-L-----NL----AARYADRIVLLHQGRLV 220 (258)
T ss_pred CcccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEECC-H-----HH----HHHhcCEEEEEECCEEE
Confidence 9999999986 4555777777521 25567777642 1 11 22233467777777654
No 153
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.5e-20 Score=188.18 Aligned_cols=183 Identities=15% Similarity=0.165 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHAR--- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~--- 467 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...+..
T Consensus 20 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 20 YTVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred EEEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 358999999999999 9999999999999999999999999999999998764 14889998754322
Q ss_pred ---hcccceeec-----CCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 ---RLQVPIFEK-----GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ---~L~v~l~~~-----~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
++....... .........+.++++.+++.. .+..+..+|||++|++.|+++|+ .+|+++|| ||||
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~llll-DEPt 171 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA-----QETAIMLL-DEPT 171 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh-----cCCCEEEE-eCcc
Confidence 221111000 001111223445555544432 35677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.+.|..+... .+.++|++|. ....+..++. .|+++..|+-+
T Consensus 172 ~gLD~~~~~-~l~~~L~~l~~~---~~~tiii~tH------~~~~~~~~~d----~i~~l~~G~i~ 223 (265)
T PRK10253 172 TWLDISHQI-DLLELLSELNRE---KGYTLAAVLH------DLNQACRYAS----HLIALREGKIV 223 (265)
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC------CHHHHHHhCC----EEEEEECCEEE
Confidence 999999864 555777776542 2556777663 2223333333 67777777654
No 154
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=8.1e-20 Score=193.65 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=126.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------------------ce
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------------------FR 455 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------------------~R 455 (621)
.+|++|+|.+.+|+ +++|+|+||||||||++.|+|++.|++|+|.+.+.++ .+
T Consensus 40 ~~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 40 VALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 58999999999999 9999999999999999999999999999999987442 13
Q ss_pred eeeeehhh-------hhhhhcccceeecCCCCCH---HHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhh
Q 007024 456 SGAVEQLR-------THARRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLI 523 (621)
Q Consensus 456 igaveQl~-------~~~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~ 523 (621)
+|+++|.. +..+++...... .+.+. ...+.++++.+.+. . .+..+..+|||++|++.||++|+
T Consensus 118 ig~v~Q~~~~~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~--- 192 (320)
T PRK13631 118 VSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILA--- 192 (320)
T ss_pred EEEEEECchhccccchHHHHHHhhHHh--cCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHH---
Confidence 78888864 122222111110 11122 23344455555443 2 35567889999999999999999
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+|+++|| ||||+|||+..+. .+.+.|..+... +.++|++|.- .-. +....-.|+.+..|+-
T Consensus 193 --~~p~iLLL-DEPtsgLD~~~~~-~l~~~L~~l~~~----g~TiiivtHd------~~~----~~~~adri~vl~~G~i 254 (320)
T PRK13631 193 --IQPEILIF-DEPTAGLDPKGEH-EMMQLILDAKAN----NKTVFVITHT------MEH----VLEVADEVIVMDKGKI 254 (320)
T ss_pred --cCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHHHC----CCEEEEEecC------HHH----HHHhCCEEEEEECCEE
Confidence 99999999 9999999999864 555777766532 5677777641 112 2222336677777765
Q ss_pred C
Q 007024 604 Y 604 (621)
Q Consensus 604 v 604 (621)
+
T Consensus 255 ~ 255 (320)
T PRK13631 255 L 255 (320)
T ss_pred E
Confidence 4
No 155
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.2e-19 Score=188.22 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=117.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhh-hhhc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH-ARRL 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~-~~~L 469 (621)
.+|+++||++.+|+ +++|+||||+|||||+++|+|+++|+.|+|.+.+.++. ++|++.|.... ...+
T Consensus 16 ~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 16 PALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred ceeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 48999999999999 99999999999999999999999999999999987641 37888886421 1111
Q ss_pred ----ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 470 ----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 470 ----~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++.+....++.+. ...+.++++.+++..+ +..+.++||||+|++.|+++|+ .+|+++|| ||||+||
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEPt~gL 167 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT-----MEPECLIF-DEVTSML 167 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccC
Confidence 1111111111122 2233444444444332 5677889999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+..+. .|.+.|..+... +.+++++|.
T Consensus 168 D~~~~~-~l~~~l~~l~~~----g~til~~tH 194 (274)
T PRK13644 168 DPDSGI-AVLERIKKLHEK----GKTIVYITH 194 (274)
T ss_pred CHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 998864 555777776542 566777764
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-19 Score=183.82 Aligned_cols=180 Identities=18% Similarity=0.211 Sum_probs=128.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR--- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~--- 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv 93 (241)
T PRK14250 16 KEILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93 (241)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhH
Confidence 358999999999999 99999999999999999999999999999999987752 3888888754322
Q ss_pred --hcccceeecCCCCCHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 468 --RLQVPIFEKGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 468 --~L~v~l~~~~~~~d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
++.+... ... .....+.++++.+... + .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+
T Consensus 94 ~e~l~~~~~--~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt~~LD~ 164 (241)
T PRK14250 94 KDNIEYGPM--LKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA-----NNPEVLLL-DEPTSALDP 164 (241)
T ss_pred HHHHhcchh--hcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCH
Confidence 2211110 111 1122334455554442 2 24566789999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+ ..+.+.|..+... .+.++|++|.- ...+. ...-.|+++..|+-+
T Consensus 165 ~~~-~~l~~~l~~~~~~---~g~tii~~sH~------~~~~~----~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 165 TST-EIIEELIVKLKNK---MNLTVIWITHN------MEQAK----RIGDYTAFLNKGILV 211 (241)
T ss_pred HHH-HHHHHHHHHHHHh---CCCEEEEEecc------HHHHH----HhCCEEEEEeCCEEE
Confidence 876 4555777776542 24567777641 22222 223367777777654
No 157
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.82 E-value=9.3e-20 Score=183.40 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=119.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|+++|+.|+|.+.+.++. ++++++|...+.
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 97 (225)
T PRK10247 20 AKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTV 97 (225)
T ss_pred ceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccH
Confidence 458999999999999 99999999999999999999999999999999987642 478888875332
Q ss_pred -hhcccceeecCCCC-CHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 467 -RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 467 -~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
+++.... ..+.. .....+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||
T Consensus 98 ~enl~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEPt~~LD 169 (225)
T PRK10247 98 YDNLIFPW--QIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQ-----FMPKVLLL-DEITSALD 169 (225)
T ss_pred HHHHHhHH--hhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCC
Confidence 2222111 00111 12223345555554421 35667889999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+ ..+.+.+..+... .+.+++++|.
T Consensus 170 ~~~~-~~l~~~l~~~~~~---~~~tvii~sh 196 (225)
T PRK10247 170 ESNK-HNVNEIIHRYVRE---QNIAVLWVTH 196 (225)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCEEEEEEC
Confidence 9886 4666777776542 2456677664
No 158
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.9e-20 Score=194.51 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=129.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh----hcCcEEEEcccccc-------------eeeeeehh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL----QHKVSVMMAACDTF-------------RSGAVEQL 462 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~----~~~GkV~I~~~Dt~-------------RigaveQl 462 (621)
..+|++|||++.+|+ +++|+|+||||||||++.|+|++. +++|+|.+.+.++. ++++++|.
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 20 VKAVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQE 97 (330)
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 568999999999999 999999999999999999999986 57899999987751 38999997
Q ss_pred hhh--------hhhcccceeecCC-C---CC---HHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhh
Q 007024 463 RTH--------ARRLQVPIFEKGY-E---KD---PAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLI 523 (621)
Q Consensus 463 ~~~--------~~~L~v~l~~~~~-~---~d---~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~ 523 (621)
... .+++...+....+ + .. ....+.++++.+++.+ .+..+..+||||+||+.||++|+
T Consensus 98 ~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~--- 174 (330)
T PRK15093 98 PQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA--- 174 (330)
T ss_pred cchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH---
Confidence 531 1111111100000 0 11 1233445555555542 24567789999999999999999
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+|+++|+ ||||++||+..+. .+.+.|..+.+. .+.++|++|. ....+..+ .-.|+++-.|+-
T Consensus 175 --~~P~llil-DEPts~LD~~~~~-~i~~lL~~l~~~---~g~tii~itH------dl~~v~~~----~dri~vm~~G~i 237 (330)
T PRK15093 175 --NQPRLLIA-DEPTNAMEPTTQA-QIFRLLTRLNQN---NNTTILLISH------DLQMLSQW----ADKINVLYCGQT 237 (330)
T ss_pred --CCCCEEEE-eCCCCcCCHHHHH-HHHHHHHHHHHh---cCCEEEEEEC------CHHHHHHh----CCEEEEEECCEE
Confidence 99999999 9999999999875 444777777542 3678888775 22233333 336667766665
Q ss_pred C
Q 007024 604 Y 604 (621)
Q Consensus 604 v 604 (621)
+
T Consensus 238 v 238 (330)
T PRK15093 238 V 238 (330)
T ss_pred E
Confidence 4
No 159
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=5.7e-20 Score=186.53 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=117.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------------eeeeeehhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------------RSGAVEQLRT 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------------RigaveQl~~ 464 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.+++ +++++.|...
T Consensus 15 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 15 HQALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeeEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 358999999999999 99999999999999999999999999999999887641 3788888654
Q ss_pred hhhhccc----ce-eecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 465 HARRLQV----PI-FEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 465 ~~~~L~v----~l-~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
+...+.+ .. .....+... ...+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++|| |
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llil-D 166 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALM-----MEPQVLLF-D 166 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-c
Confidence 3322211 00 000011111 122334444443332 25567789999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+|+|+..+ ..+.+.+..+... +.+++++|.
T Consensus 167 EPt~~LD~~~~-~~l~~~l~~~~~~----~~tii~~sh 199 (242)
T PRK11124 167 EPTAALDPEIT-AQIVSIIRELAET----GITQVIVTH 199 (242)
T ss_pred CCCCcCCHHHH-HHHHHHHHHHHHc----CCEEEEEeC
Confidence 99999999876 4555777776532 556777664
No 160
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=6.4e-20 Score=188.03 Aligned_cols=160 Identities=21% Similarity=0.211 Sum_probs=116.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc--ccceeecC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--QVPIFEKG 477 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L--~v~l~~~~ 477 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. .++++++|...+...+ .+.-+...
T Consensus 17 ~~vl~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 17 RRVLSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDTTLPLTVNRFLRL 92 (251)
T ss_pred ceEEEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEeccccccccccChhHHHHHhc
Confidence 358999999999999 99999999999999999999999999999998763 3689999875432221 11000000
Q ss_pred CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
+.......+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+..+. .+.+.|..
T Consensus 93 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt~~LD~~~~~-~l~~~L~~ 165 (251)
T PRK09544 93 RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALL-----NRPQLLVL-DEPTQGVDVNGQV-ALYDLIDQ 165 (251)
T ss_pred cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHHH-HHHHHHHH
Confidence 11111223345555554433 25667889999999999999999 99999999 9999999998864 55577776
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
+... .+.++|++|.
T Consensus 166 ~~~~---~g~tiiivsH 179 (251)
T PRK09544 166 LRRE---LDCAVLMVSH 179 (251)
T ss_pred HHHh---cCCEEEEEec
Confidence 6542 1456666654
No 161
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=8.8e-20 Score=180.23 Aligned_cols=157 Identities=17% Similarity=0.111 Sum_probs=116.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHA----- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~----- 466 (621)
..+|++++|++.+|+ +++|+||||+||||+++.|+|++.|++|+|.+.+.++. ++++++|...+.
T Consensus 14 ~~il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 14 QPLLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred eeEEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 358999999999999 99999999999999999999999999999999987642 377887754322
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+++..... .... ...+.++++.+.... .+..+..+|||++|++.|+++|. .+|+++|+ ||||+|+|+.
T Consensus 92 ~~~~~~~~~---~~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~-----~~p~~lil-DEP~~~LD~~ 161 (200)
T PRK13540 92 RENCLYDIH---FSPG-AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWM-----SKAKLWLL-DEPLVALDEL 161 (200)
T ss_pred HHHHHHHHh---cCcc-hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcccCHH
Confidence 22211110 1111 123444555444332 25667789999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+ ..+.+.|..+.+. +.++|++|.
T Consensus 162 ~~-~~l~~~l~~~~~~----~~tiii~sh 185 (200)
T PRK13540 162 SL-LTIITKIQEHRAK----GGAVLLTSH 185 (200)
T ss_pred HH-HHHHHHHHHHHHc----CCEEEEEeC
Confidence 86 4566777776532 456666664
No 162
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.82 E-value=9.3e-20 Score=181.68 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=126.0
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhh------hh
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RR 468 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~------~~ 468 (621)
++.+++|++.+|+ +++|+||||+||||+++.|+|++.|++|+|.+.+.++. +++++.|...+. ++
T Consensus 13 ~~~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGE--IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3568999999999 99999999999999999999999999999999987752 388998875333 22
Q ss_pred cccceeecCC-CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 469 LQVPIFEKGY-EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 469 L~v~l~~~~~-~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+...+..... .......+.++++.++... .+..+..+||||+|++.|+++|. .+|+++|| ||||+|+|...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~~LD~~~~ 164 (213)
T TIGR01277 91 IGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLV-----RPNPILLL-DEPFSALDPLLR 164 (213)
T ss_pred HHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCccCCHHHH
Confidence 2222111100 1111223344555544433 25667789999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
. .+.+.|..+.+. .+.+.|++|.- ...+. ...--++.+..|+.+
T Consensus 165 ~-~~~~~l~~~~~~---~~~tii~vsh~------~~~~~----~~~d~v~~l~~g~i~ 208 (213)
T TIGR01277 165 E-EMLALVKQLCSE---RQRTLLMVTHH------LSDAR----AIASQIAVVSQGKIK 208 (213)
T ss_pred H-HHHHHHHHHHHh---cCCEEEEEeCC------HHHHH----hhcCeEEEEECCeEE
Confidence 4 555777776542 14566776642 22222 222356666666654
No 163
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=1.6e-19 Score=173.16 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=130.3
Q ss_pred cccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------e-eeeeehhhhhhhhc------ccc
Q 007024 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------R-SGAVEQLRTHARRL------QVP 472 (621)
Q Consensus 406 Is~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------R-igaveQl~~~~~~L------~v~ 472 (621)
+++.++.|+ +++|+||+|+||||+++.|||+..|.+|.|.|++.|.. | +..++|...+...| ++.
T Consensus 18 fdl~v~~ge--~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGE--IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCc--EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhccc
Confidence 566778999 99999999999999999999999999999999999862 2 77888877554444 222
Q ss_pred eeecCCCCC--HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 473 IFEKGYEKD--PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 473 l~~~~~~~d--~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+.. +..-+ ....+..+....++.++ +..+-.+|||++||++|||+|. .+-.++|| |||++.||+.-+.+.
T Consensus 96 l~P-~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclv-----R~~PilLL-DEPFsALdP~LR~eM 168 (231)
T COG3840 96 LSP-GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLV-----REQPILLL-DEPFSALDPALRAEM 168 (231)
T ss_pred CCc-ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHh-----ccCCeEEe-cCchhhcCHHHHHHH
Confidence 211 11112 22344556666677777 5777889999999999999999 66666666 999999999877544
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+ ..+.+++. ..+.|.+++|.- +--+. .....++|+.+|+-.
T Consensus 169 l-~Lv~~l~~---E~~~TllmVTH~------~~Da~----~ia~~~~fl~~Gri~ 209 (231)
T COG3840 169 L-ALVSQLCD---ERKMTLLMVTHH------PEDAA----RIADRVVFLDNGRIA 209 (231)
T ss_pred H-HHHHHHHH---hhCCEEEEEeCC------HHHHH----HhhhceEEEeCCEEE
Confidence 4 56666665 458899999863 22333 334488999988865
No 164
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.82 E-value=1e-19 Score=182.40 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=117.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc--cc--cc-------------ceeeeeehh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--AC--DT-------------FRSGAVEQL 462 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~--~~--Dt-------------~RigaveQl 462 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+. +. +. .++|+++|.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 468999999999999 999999999999999999999999999999997 31 32 138899987
Q ss_pred hhhhhhc------ccceeecCCCCC-HHHHHHHHHHHHhhcC-C-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 463 RTHARRL------QVPIFEKGYEKD-PAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 463 ~~~~~~L------~v~l~~~~~~~d-~~~ia~~al~~~~~~~-~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
..+...+ ...+...+.... ....+.++++.+.... + +..+.++|||++|++.|+++|. .+|+++||
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll 173 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFI-----ADYPILLL 173 (224)
T ss_pred cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 6433222 111111111111 1233444555554432 2 4567889999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|+|+..+ ..+.+.+..+... +.+++++|.
T Consensus 174 -DEPt~~LD~~~~-~~l~~~l~~~~~~----g~tii~vsH 207 (224)
T TIGR02324 174 -DEPTASLDAANR-QVVVELIAEAKAR----GAALIGIFH 207 (224)
T ss_pred -cCCcccCCHHHH-HHHHHHHHHHHhc----CCEEEEEeC
Confidence 999999999886 4555777776532 567777775
No 165
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.5e-20 Score=180.74 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=136.9
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARR 468 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~ 468 (621)
....+|+++|+.+++|+ +.+|||||||||||||.+++.+++.+.|+|.+.+.++. ++....|...+.-+
T Consensus 12 ~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 35678999999999999 99999999999999999999999999999999998872 24444444433333
Q ss_pred cc---------cceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 469 LQ---------VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 469 L~---------v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
+- .|+.......+....+.+|++++.+.+. |..+-.+|||++||.-+|..|+ .+.|.++| |||+
T Consensus 90 lTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla-----QdTdyvlL-DEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA-----QDTDYVLL-DEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee-----ccCcEEEe-cCcc
Confidence 31 2332222234456778899999988887 6667778999999999999999 89999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++||.....+ +.+.|+.+++.. +.+++++-. | ++++..+.--|+-+-+|+-+
T Consensus 164 NNLDmkHsv~-iMk~Lrrla~el---~KtiviVlH-D---------INfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 164 NNLDMKHSVQ-IMKILRRLADEL---GKTIVVVLH-D---------INFASCYSDHIVALKNGKVV 215 (252)
T ss_pred cccchHHHHH-HHHHHHHHHHHh---CCeEEEEEe-c---------ccHHHhhhhheeeecCCEEE
Confidence 9999987654 448888887654 444444321 1 13333444466667777665
No 166
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.82 E-value=6.7e-20 Score=187.25 Aligned_cols=183 Identities=19% Similarity=0.165 Sum_probs=127.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------------------eee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSG 457 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------------------Rig 457 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+.++. +++
T Consensus 13 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGE--KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 358999999999999 99999999999999999999999999999999886542 378
Q ss_pred eeehhhhhhhhcc----cceee-cCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 458 AVEQLRTHARRLQ----VPIFE-KGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 458 aveQl~~~~~~L~----v~l~~-~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
+++|...+...+. +.+.. ...+... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p 165 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA-----MRP 165 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHH-----cCC
Confidence 8888654332221 11100 0011111 123344444443322 24566789999999999999999 999
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+++|| ||||+|||+..+. .+.+.|..+... .+.++|++|.- ...+..+ .--+..+..|+-+
T Consensus 166 ~llll-DEP~~~LD~~~~~-~l~~~l~~~~~~---~~~tiiivsH~------~~~~~~~----~d~i~~l~~G~i~ 226 (252)
T TIGR03005 166 KVMLF-DEVTSALDPELVG-EVLNVIRRLASE---HDLTMLLVTHE------MGFAREF----ADRVCFFDKGRIV 226 (252)
T ss_pred CEEEE-eCCcccCCHHHHH-HHHHHHHHHHHh---cCcEEEEEeCC------HHHHHHh----cCEEEEEECCEEE
Confidence 99999 9999999998864 555777776542 25677777752 2222222 2366777777654
No 167
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3e-19 Score=182.11 Aligned_cols=181 Identities=21% Similarity=0.211 Sum_probs=126.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc---------eeeeeehhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF---------RSGAVEQLRTH 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~---------RigaveQl~~~ 465 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| ..|+|.+.+.++. ++|+++|...+
T Consensus 16 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~ 93 (250)
T PRK14247 16 VEVLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNP 93 (250)
T ss_pred eeeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCcc
Confidence 358999999999999 9999999999999999999999874 6999999987652 48899987543
Q ss_pred h------hhcccceeecCCCCCH---HHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 466 A------RRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 466 ~------~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
. +++.+........... ...+.++++.+... ..+..+.++|||++|++.|+++|+ .+|+++
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ll 168 (250)
T PRK14247 94 IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA-----FQPEVL 168 (250)
T ss_pred CCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 2 2222111101110111 12334455544432 235667889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|+|+..+ ..+.+.|..+.. +.+.+++|.- ...+. ...-.|+.+..|+-+
T Consensus 169 lL-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sH~------~~~~~----~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 169 LA-DEPTANLDPENT-AKIESLFLELKK-----DMTIVLVTHF------PQQAA----RISDYVAFLYKGQIV 224 (250)
T ss_pred EE-cCCCccCCHHHH-HHHHHHHHHHhc-----CCEEEEEeCC------HHHHH----HhcCEEEEEECCeEE
Confidence 99 999999999986 455567766642 4566776642 22222 222366777777654
No 168
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.81 E-value=1.2e-19 Score=182.79 Aligned_cols=181 Identities=19% Similarity=0.095 Sum_probs=123.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccccee--eeeehh-hhhhhhcccceee
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS--GAVEQL-RTHARRLQVPIFE 475 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri--gaveQl-~~~~~~L~v~l~~ 475 (621)
...+|++++|++.+|+ +++|+||||||||||++.|+|+++|..|+|.+.+.+.+.. +...+. .+..+++.....
T Consensus 34 ~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~~- 110 (224)
T cd03220 34 EFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGR- 110 (224)
T ss_pred CeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHHH-
Confidence 3569999999999999 9999999999999999999999999999999998775421 111111 122233222111
Q ss_pred cCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 476 KGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 476 ~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
.++.... ..+.++++.+.+.. .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+..+. .+.
T Consensus 111 -~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DEP~~gLD~~~~~-~~~ 182 (224)
T cd03220 111 -LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATA-----LEPDILLI-DEVLAVGDAAFQE-KCQ 182 (224)
T ss_pred -HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-HHH
Confidence 1111221 22334444444333 35677899999999999999999 99999999 9999999998864 555
Q ss_pred HHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+.+..+... +.++|++|.- ...+ ....-.|+.+..|+-+
T Consensus 183 ~~l~~~~~~----~~tiii~sH~------~~~~----~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 183 RRLRELLKQ----GKTVILVSHD------PSSI----KRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHHHhC----CCEEEEEeCC------HHHH----HHhCCEEEEEECCEEE
Confidence 677776542 4567776642 1122 2223367777777643
No 169
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=9.6e-20 Score=181.57 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=122.8
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhhhhcc-
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~~~L~- 470 (621)
+++|++.+ + +++|+||||+|||||++.|+|++.|++|+|.+.+.++. +++++.|...+...+.
T Consensus 16 ~vsl~i~~-e--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-E--VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-e--eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 89999999 9 99999999999999999999999999999999886541 3888888754332221
Q ss_pred ---cceeecCCCC-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 471 ---VPIFEKGYEK-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 471 ---v~l~~~~~~~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
+.+....+.. .....+.++++.+.... .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll-DEPt~~LD~~~ 166 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALA-----AQPELLLL-DEPFSALDRAL 166 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHHH
Confidence 1110011110 01123344455444332 25667889999999999999999 99999999 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
+ +.+.+.+..++.. .+.+++++|.-.. .+ ....-.+.++..|+-
T Consensus 167 ~-~~l~~~l~~~~~~---~~~tiii~sH~~~------~~----~~~~d~i~~l~~G~i 210 (214)
T cd03297 167 R-LQLLPELKQIKKN---LNIPVIFVTHDLS------EA----EYLADRIVVMEDGRL 210 (214)
T ss_pred H-HHHHHHHHHHHHH---cCcEEEEEecCHH------HH----HHhcCEEEEEECCEE
Confidence 6 4566777777543 1456777764221 12 222336777777764
No 170
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.81 E-value=1e-19 Score=186.58 Aligned_cols=182 Identities=18% Similarity=0.150 Sum_probs=128.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------------------eee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSG 457 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------------------Rig 457 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.|+.|+|.+.+.++. +++
T Consensus 18 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 18 HEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 458999999999999 99999999999999999999999999999999986541 378
Q ss_pred eeehhhhhhhhccc----ceee-cCCCCCH---HHHHHHHHHHHhhcCC--CccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 458 AVEQLRTHARRLQV----PIFE-KGYEKDP---AIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 458 aveQl~~~~~~L~v----~l~~-~~~~~d~---~~ia~~al~~~~~~~~--d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
++.|...+...+.+ .+.. ..+.... ...+.++++.++.... +..+..+|||++|++.|+++|. .+
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~-----~~ 170 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----ME 170 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHh-----cC
Confidence 88886543322211 1100 0011111 2233444554444332 4556789999999999999999 99
Q ss_pred CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 528 PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+++|| ||||+|||+..+. .+.+.|..+.+. +.+++++|.-- .. +....-.|+.+..|+.+
T Consensus 171 p~llll-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tiiivsH~~------~~----~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 171 PEVLLF-DEPTSALDPELVG-EVLRIMQQLAEE----GKTMVVVTHEM------GF----ARHVSSHVIFLHQGKIE 231 (257)
T ss_pred CCEEEE-eCCcccCCHHHHH-HHHHHHHHHHhc----CCEEEEEeCCH------HH----HHHhcCEEEEEECCEEE
Confidence 999999 9999999999874 555777776532 56777877521 11 22333467777777765
No 171
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=8.3e-20 Score=188.94 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=118.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh--h---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H--- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~--~--- 465 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|..|+|.+.+.++. ++|++.|... +
T Consensus 22 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 22 NNALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred ccceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 458999999999999 99999999999999999999999999999999987641 3889988752 1
Q ss_pred --hhhcccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 466 --ARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 466 --~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+++..... ....+.. ..+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+
T Consensus 100 tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL-DEP~~ 171 (271)
T PRK13632 100 TVEDDIAFGLE--NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLA-----LNPEIIIF-DESTS 171 (271)
T ss_pred cHHHHHHhHHH--HcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 222211111 1111222 23344455444332 35667889999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+ ..+.+.|..+.... +.++|++|.
T Consensus 172 gLD~~~~-~~l~~~l~~~~~~~---~~tiii~sH 201 (271)
T PRK13632 172 MLDPKGK-REIKKIMVDLRKTR---KKTLISITH 201 (271)
T ss_pred cCCHHHH-HHHHHHHHHHHHhc---CcEEEEEEe
Confidence 9999876 45557777775431 356667664
No 172
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=6.2e-20 Score=185.56 Aligned_cols=201 Identities=21% Similarity=0.233 Sum_probs=135.3
Q ss_pred HHHHHHHHHHcCCCC-ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce-------
Q 007024 384 AAMEEALVRILTPRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------- 455 (621)
Q Consensus 384 ~al~~~L~~il~p~~-~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R------- 455 (621)
..+...|..+..+.. ++.++.||||.+++|+ +++|+|||||||||||++|+|++.|++|+|.+.|.|+||
T Consensus 20 pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~ 97 (325)
T COG4586 20 PGLKGSLNHFFHRKERSIEAVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97 (325)
T ss_pred chhHHHHHhhcCchhhhhhhhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH
Confidence 346677777777665 6789999999999999 999999999999999999999999999999999999986
Q ss_pred -eeeeehhhh--hhh--hc-ccceeecCCCCCHH---HHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhc
Q 007024 456 -SGAVEQLRT--HAR--RL-QVPIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYL 525 (621)
Q Consensus 456 -igaveQl~~--~~~--~L-~v~l~~~~~~~d~~---~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~ 525 (621)
+++|.-.+. +-. .+ .+.+....|.-... +......+.+...++ ...+.-+|-|++.++.|+.+|.
T Consensus 98 ~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLL----- 172 (325)
T COG4586 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALL----- 172 (325)
T ss_pred HHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhc-----
Confidence 332221110 000 00 00011111222222 222233333333332 4566678999999999999999
Q ss_pred CCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 526 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 526 ~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
++|++++| ||||.|||...|. .+.+.++.+.+. ...+++..|. ..+.+. ...-.|+.|-.||-+.
T Consensus 173 h~p~VLfL-DEpTvgLDV~aq~-~ir~Flke~n~~---~~aTVllTTH------~~~di~----~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 173 HPPKVLFL-DEPTVGLDVNAQA-NIREFLKEYNEE---RQATVLLTTH------IFDDIA----TLCDRVLLIDQGQLVF 237 (325)
T ss_pred CCCcEEEe-cCCccCcchhHHH-HHHHHHHHHHHh---hCceEEEEec------chhhHH----HhhhheEEeeCCcEee
Confidence 99998888 9999999999885 444666666543 3445554443 122222 3334788888888875
Q ss_pred c
Q 007024 606 D 606 (621)
Q Consensus 606 D 606 (621)
|
T Consensus 238 d 238 (325)
T COG4586 238 D 238 (325)
T ss_pred c
Confidence 3
No 173
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.1e-19 Score=195.01 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=116.5
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhhhhccc
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~~~L~v 471 (621)
+++|++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+...+.+
T Consensus 16 ~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQG--ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 7999999999 99999999999999999999999999999999886531 38899887644333211
Q ss_pred c-eeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 472 P-IFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 472 ~-l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
. ....+........+.++++.++... .+..+..+||||+||+.|+|+|+ .+|+++|| ||||+|||+..+. .
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~-----~~p~llLL-DEPts~LD~~~~~-~ 166 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALL-----TAPELLLM-DEPLASLDLPRKR-E 166 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCCHHHHH-H
Confidence 0 0000001112233455566555443 36677889999999999999999 99999999 9999999998864 5
Q ss_pred HHHHHHHhhcCCCCCCceEEEecc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.|..+... .+.+.|++|.
T Consensus 167 l~~~L~~l~~~---~g~tii~vTH 187 (352)
T PRK11144 167 LLPYLERLARE---INIPILYVSH 187 (352)
T ss_pred HHHHHHHHHHh---cCCeEEEEec
Confidence 55777776543 2566777775
No 174
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.81 E-value=1.1e-19 Score=193.46 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcccccc-------------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF-------------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt~-------------RigaveQl~ 463 (621)
..+|++|||++.+|+ +++|+|+||||||||++.|+|++.|. +|+|.+.+.|+. ++++++|..
T Consensus 29 ~~~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 106 (330)
T PRK09473 29 VTAVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106 (330)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence 568999999999999 99999999999999999999999885 999999998762 489999986
Q ss_pred h--hhhhccc------ceeecCCCCCH---HHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 464 T--HARRLQV------PIFEKGYEKDP---AIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 464 ~--~~~~L~v------~l~~~~~~~d~---~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
. +...+.+ .+... .+... ...+.++++.+.+.+ .+..+..+||||+||+.||++|+ .+|
T Consensus 107 ~~~l~p~~~v~~~i~~~~~~~-~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~-----~~P 180 (330)
T PRK09473 107 MTSLNPYMRVGEQLMEVLMLH-KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL-----CRP 180 (330)
T ss_pred hhhcCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH-----cCC
Confidence 2 2221211 11100 01122 233444555444332 13467889999999999999999 999
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+++|+ ||||++||...+... .+.|..+.+. .+.+.+++|. ....+..+ .-.|+.+-.|+-+
T Consensus 181 ~llil-DEPts~LD~~~~~~i-~~lL~~l~~~---~g~til~iTH------dl~~~~~~----~Dri~vm~~G~iv 241 (330)
T PRK09473 181 KLLIA-DEPTTALDVTVQAQI-MTLLNELKRE---FNTAIIMITH------DLGVVAGI----CDKVLVMYAGRTM 241 (330)
T ss_pred CEEEE-eCCCccCCHHHHHHH-HHHHHHHHHH---cCCEEEEEEC------CHHHHHHh----CCEEEEEECCEEE
Confidence 99999 999999999998644 4677777543 3677888775 22222222 2366666666654
No 175
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.6e-19 Score=186.79 Aligned_cols=160 Identities=20% Similarity=0.280 Sum_probs=115.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. +++++.|..
T Consensus 26 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 26 FEAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 358999999999999 999999999999999999999987 58999999987642 388988865
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+ .+++................+.++++.+... ..+..+..+||||+|++.|+++|. .+|+++||
T Consensus 104 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL 178 (269)
T PRK14259 104 NPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA-----IEPEVILM 178 (269)
T ss_pred ccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 32 2222211111111111122334444444321 135566789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|||+..+. .+.+.|..+.. +.++|++|.
T Consensus 179 -DEPt~gLD~~~~~-~l~~~l~~~~~-----~~tiiivtH 211 (269)
T PRK14259 179 -DEPCSALDPISTL-KIEETMHELKK-----NFTIVIVTH 211 (269)
T ss_pred -cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999998864 55577777642 346677664
No 176
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.8e-19 Score=181.87 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=125.7
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhh------hhccc
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHA------RRLQV 471 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~------~~L~v 471 (621)
+++|++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. ++++++|...+. +++..
T Consensus 17 ~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGE--RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 7999999999 99999999999999999999999999999999987642 388988875333 22222
Q ss_pred ceeec-CCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 472 PIFEK-GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 472 ~l~~~-~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
++... .........+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+..+ ..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL-DEP~~gLD~~~~-~~ 167 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLV-----REQPILLL-DEPFSALDPALR-QE 167 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-HH
Confidence 22110 001111223444555544332 36677889999999999999999 99999999 999999999886 45
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+.+.|..+... .+.+.|++|.-.. . +....-.|+.+..|+-+
T Consensus 168 ~~~~l~~~~~~---~~~tiii~sH~~~------~----~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 168 MLTLVSQVCQE---RQLTLLMVSHSLE------D----AARIAPRSLVVADGRIA 209 (232)
T ss_pred HHHHHHHHHHh---cCCEEEEEECCHH------H----HHHhCCEEEEEECCEEE
Confidence 55777776542 2456677664221 1 22333367777777765
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.81 E-value=1.2e-19 Score=186.07 Aligned_cols=182 Identities=21% Similarity=0.203 Sum_probs=127.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc-----cc-------------eeeeeehh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TF-------------RSGAVEQL 462 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D-----t~-------------RigaveQl 462 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++.|+.|+|.+.+.+ +. +++++.|.
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 20 KGCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred eeeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 58999999999999 999999999999999999999999999999999876 31 37888887
Q ss_pred hhh--h------hhcccceeecCC-C-CCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 463 RTH--A------RRLQVPIFEKGY-E-KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 463 ~~~--~------~~L~v~l~~~~~-~-~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
..+ . +++...+..... . ......+.++++.+.... .+..+..+|||++|++.||++|+ .+|++
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~-----~~p~l 172 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLV-----THPRL 172 (258)
T ss_pred cccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 531 1 111111100000 0 011223344555554431 35667889999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|||+..+ ..+.+.+..+... .+.++|++|.-- ..+ ....-.|+++..|+-+
T Consensus 173 lll-DEPt~~LD~~~~-~~l~~~l~~~~~~---~~~tii~isH~~------~~~----~~~~d~i~~l~~g~i~ 231 (258)
T PRK11701 173 VFM-DEPTGGLDVSVQ-ARLLDLLRGLVRE---LGLAVVIVTHDL------AVA----RLLAHRLLVMKQGRVV 231 (258)
T ss_pred EEE-cCCcccCCHHHH-HHHHHHHHHHHHh---cCcEEEEEeCCH------HHH----HHhcCEEEEEECCEEE
Confidence 999 999999999886 4555777666542 256777777522 122 2222367777777765
No 178
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.81 E-value=1.4e-19 Score=194.30 Aligned_cols=157 Identities=18% Similarity=0.130 Sum_probs=115.9
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhhhhcc-
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~~~L~- 470 (621)
+++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|+++|...+...+.
T Consensus 15 ~isl~i~~Ge--i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQG--VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999 9999999999999999999999999999999988654 13889988754333221
Q ss_pred ---cceeecCCC-CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 471 ---VPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 471 ---v~l~~~~~~-~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
+.+...... .+....+.++++.+.+.. .+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~-----~~p~lllL-DEPts~LD~~~ 166 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALL-----SSPRLLLM-DEPLAALDDPR 166 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCCcCCCHHH
Confidence 111111111 111223445555554433 35677889999999999999999 99999999 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+ ..+.+.|..+... .+.++|++|.
T Consensus 167 ~-~~l~~~L~~l~~~---~g~tiiivtH 190 (354)
T TIGR02142 167 K-YEILPYLERLHAE---FGIPILYVSH 190 (354)
T ss_pred H-HHHHHHHHHHHHh---cCCEEEEEec
Confidence 6 4555777776543 2566777765
No 179
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.9e-19 Score=175.19 Aligned_cols=189 Identities=17% Similarity=0.153 Sum_probs=134.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|+++++++.+|+ +.+|+||||+||||||+.|+|.+.|.+|+|.+.+.+.- +-+...|...++
T Consensus 14 r~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 14 RRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred ceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 468899999999999 99999999999999999999999999999999998761 234444443221
Q ss_pred --hhc---ccceeecCCCCCHHHHHHHHHHHHhhcCCC-ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 467 --RRL---QVPIFEKGYEKDPAIVAKEAIQEATRNGSD-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 467 --~~L---~v~l~~~~~~~d~~~ia~~al~~~~~~~~d-~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
+.. .+|........+...++..+++.....++. ...-.+|||+|||+.++|.|++++....-.-+||+||||+.
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 111 112211111123445677777776666663 44456799999999999999998765433335555999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||...|...+ +..++++..+ +--..|+..+ |++..+.-.|+.+..|.-+.
T Consensus 172 LDi~HQ~~tl-~laR~la~~g---~~V~~VLHDL-----------NLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 172 LDIAHQHHTL-RLARQLAREG---GAVLAVLHDL-----------NLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred cchHHHHHHH-HHHHHHHhcC---CcEEEEEccc-----------hHHHHhhheeeeeeCCeEee
Confidence 9999998777 7888888765 2233444432 44556666788887777663
No 180
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=201.46 Aligned_cols=194 Identities=13% Similarity=0.109 Sum_probs=138.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhh---h--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRT---H-- 465 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~---~-- 465 (621)
.+++++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++.|.+. +
T Consensus 267 ~~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 47899999999999 9999999999999999999999999999999988654 13789998752 2
Q ss_pred ----hhhcccceeec----C--CCC-CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 466 ----ARRLQVPIFEK----G--YEK-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 466 ----~~~L~v~l~~~----~--~~~-d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+++....... + +.. .....+.++++.+... ..+..+.++||||+|++.||++|+ .+|+++|
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~-----~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS-----EDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc-----cCCCEEE
Confidence 22222211110 0 011 1112345556655552 246778899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKKL 610 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~ 610 (621)
| ||||+|||+..+. .+.+.+..+.+. +.++|++|.-- . .+....-.++++..|+-+. +...+
T Consensus 420 L-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tviivsHd~------~----~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 L-DEPTRGIDVGAKH-EIYNVIYELAAQ----GVAVLFVSSDL------P----EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred E-cCCCCCCCHhHHH-HHHHHHHHHHhC----CCEEEEECCCH------H----HHHhhCCEEEEEECCEEEEEEccccC
Confidence 9 9999999999874 555777777643 56778877521 1 1334445677787787553 45566
Q ss_pred CHHHHHH
Q 007024 611 NVKSIVK 617 (621)
Q Consensus 611 ~~~~~v~ 617 (621)
....++.
T Consensus 484 ~~~~~~~ 490 (501)
T PRK11288 484 TERQALS 490 (501)
T ss_pred CHHHHHH
Confidence 6666654
No 181
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.81 E-value=1.8e-19 Score=202.22 Aligned_cols=181 Identities=12% Similarity=0.088 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L 469 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+...+
T Consensus 24 ~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 24 VEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 458999999999999 99999999999999999999999999999999987641 388999975433222
Q ss_pred cc----ceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 QV----PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 ~v----~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
.+ .+... ........+.++++.++...+ +..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+.
T Consensus 102 tv~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~-----~~p~lllL-DEPt~~LD~~ 174 (510)
T PRK15439 102 SVKENILFGLP-KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLM-----RDSRILIL-DEPTASLTPA 174 (510)
T ss_pred cHHHHhhcccc-cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCCCCCHH
Confidence 11 11100 111122344555655555433 6677899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+ ..+.+.|..+.+. +.++|++|.- ...+. ...-.|+++..|+-+
T Consensus 175 ~~-~~l~~~l~~~~~~----g~tiiivtHd------~~~~~----~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 175 ET-ERLFSRIRELLAQ----GVGIVFISHK------LPEIR----QLADRISVMRDGTIA 219 (510)
T ss_pred HH-HHHHHHHHHHHHC----CCEEEEEeCC------HHHHH----HhCCEEEEEECCEEE
Confidence 86 4555777777542 5667777652 22222 223467777777654
No 182
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.1e-19 Score=176.03 Aligned_cols=162 Identities=23% Similarity=0.257 Sum_probs=124.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----eeeeeehhhhhhhhc----cc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----RSGAVEQLRTHARRL----QV 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----RigaveQl~~~~~~L----~v 471 (621)
..+|+++|+.+.+|+ .++++||+||||||+|+.+||+..|..|+|.+++..+. +-|.|+|...+..-+ |+
T Consensus 18 ~~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNv 95 (259)
T COG4525 18 RSALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNV 95 (259)
T ss_pred hhhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHH
Confidence 458999999999999 99999999999999999999999999999999987552 468899976443333 23
Q ss_pred ceeecCCCCCHH---HHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 472 PIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 472 ~l~~~~~~~d~~---~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.+-....+.+.+ .++.+.+...++.++ +..+..+||||+||+.+||+|+ .+|++++| |||+..+|+..+
T Consensus 96 afgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa-----~eP~~LlL-DEPfgAlDa~tR- 168 (259)
T COG4525 96 AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA-----VEPQLLLL-DEPFGALDALTR- 168 (259)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh-----cCcceEee-cCchhhHHHHHH-
Confidence 222222233333 445555666667777 5678899999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.+.|-++-+. .+...+++|.
T Consensus 169 e~mQelLldlw~~---tgk~~lliTH 191 (259)
T COG4525 169 EQMQELLLDLWQE---TGKQVLLITH 191 (259)
T ss_pred HHHHHHHHHHHHH---hCCeEEEEec
Confidence 4566666665443 3555666664
No 183
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=3.1e-19 Score=176.93 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=119.7
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh---hcCcEEEEcccccc--------eeeeeehhhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF--------RSGAVEQLRTHAR 467 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~---~~~GkV~I~~~Dt~--------RigaveQl~~~~~ 467 (621)
...+|++++|.+.+|+ +++|+||||||||||+++|+|++. |.+|+|.+.+.++. +++++.|...+..
T Consensus 19 ~~~il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~ 96 (202)
T cd03233 19 KIPILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFP 96 (202)
T ss_pred CceeeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCC
Confidence 4568999999999999 999999999999999999999998 88999999988752 2666666432222
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 468 ~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.+.+ .+.+.+......+..+.++|||++|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 97 ~~tv---------------~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~-----~~p~llll-DEPt~~LD~~~~- 154 (202)
T cd03233 97 TLTV---------------RETLDFALRCKGNEFVRGISGGERKRVSIAEALV-----SRASVLCW-DNSTRGLDSSTA- 154 (202)
T ss_pred CCcH---------------HHHHhhhhhhccccchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-cCCCccCCHHHH-
Confidence 1111 1111111001145567889999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+.+.+.+..+.+.. +.+.+|++.-+. .. +....-.++++..|+-+
T Consensus 155 ~~~~~~l~~~~~~~---~~t~ii~~~h~~-----~~----~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 155 LEILKCIRTMADVL---KTTTFVSLYQAS-----DE----IYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHHHHHHhC---CCEEEEEEcCCH-----HH----HHHhCCeEEEEECCEEE
Confidence 45667777775431 344455432211 11 22333477777777643
No 184
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.8e-19 Score=182.36 Aligned_cols=181 Identities=18% Similarity=0.128 Sum_probs=127.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhh-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARR- 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~- 468 (621)
..+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. +++++.|...+...
T Consensus 18 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 18 IQALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred ceeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 458999999999999 99999999999999999999999999999999987641 37888886543322
Q ss_pred -----cccceeecCCCCCHHHHHHHHHHHH-hhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 469 -----LQVPIFEKGYEKDPAIVAKEAIQEA-TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 469 -----L~v~l~~~~~~~d~~~ia~~al~~~-~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
+........ .......+.++++.+ .... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|+
T Consensus 96 tv~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~illl-DEPt~~L 168 (237)
T PRK11614 96 TVEENLAMGGFFAE-RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALM-----SQPRLLLL-DEPSLGL 168 (237)
T ss_pred cHHHHHHHhhhccC-hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-cCccccC
Confidence 211111000 011122233344443 1221 24566789999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+..+ ..+.+.+..+.+. +.++|++|.- ... +....-.+.++..|+-+
T Consensus 169 D~~~~-~~l~~~l~~~~~~----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 169 APIII-QQIFDTIEQLREQ----GMTIFLVEQN------ANQ----ALKLADRGYVLENGHVV 216 (237)
T ss_pred CHHHH-HHHHHHHHHHHHC----CCEEEEEeCc------HHH----HHhhCCEEEEEeCCEEE
Confidence 99876 4666777777542 5567777642 111 22333467777777754
No 185
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.1e-19 Score=188.55 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=118.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh--h---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT--H--- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~--~--- 465 (621)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 20 ~~~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 358999999999999 99999999999999999999999999999999987652 3899998752 1
Q ss_pred --hhhcccceeecCCCCCHH---HHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 466 --ARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 466 --~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+++..... ..+.... ..+.++++.+.+.++ +..+..+|||++|++.||++|+ .+|+++|| ||||+
T Consensus 98 tv~eni~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~-----~~p~llll-DEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGME--NQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA-----LRPEIIIL-DESTS 169 (277)
T ss_pred CHHHHHHhhHH--HcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 222211111 1111121 233444554433332 5567789999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+..+ ..|.+.+..+.+. .+.+++++|.
T Consensus 170 ~LD~~~~-~~l~~~l~~l~~~---~g~tiil~sH 199 (277)
T PRK13642 170 MLDPTGR-QEIMRVIHEIKEK---YQLTVLSITH 199 (277)
T ss_pred cCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 9999987 4555777777542 2567777764
No 186
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=2.1e-19 Score=201.15 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=130.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~~~L 469 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...+...+
T Consensus 17 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 17 VKALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred eEEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 458999999999999 9999999999999999999999999999999998764 1389999975333222
Q ss_pred ------ccceee-cCCC-CCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 470 ------QVPIFE-KGYE-KDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 470 ------~v~l~~-~~~~-~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
...... ..+. .+. ...+.++++.+..... +..+.++||||+|++.||++|+ .+|+++|| |||
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEP 168 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS-----FESKVIIM-DEP 168 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCC
Confidence 211110 0011 111 1234455555555433 5677899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|||+..+. .+.+.+..+... +.++|++|. |. -. +....-.|+++..|+-+
T Consensus 169 t~~LD~~~~~-~l~~~l~~l~~~----~~tvii~sH-d~-----~~----~~~~~d~i~~l~~G~i~ 220 (501)
T PRK10762 169 TDALTDTETE-SLFRVIRELKSQ----GRGIVYISH-RL-----KE----IFEICDDVTVFRDGQFI 220 (501)
T ss_pred cCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC-CH-----HH----HHHhCCEEEEEeCCEEE
Confidence 9999999874 555777777542 556777664 21 11 22333467777777654
No 187
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.81 E-value=2.1e-19 Score=184.10 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=128.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh----cCcEEEEccccc-------ceeeeeehhhh--hhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ----HKVSVMMAACDT-------FRSGAVEQLRT--HAR 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~----~~GkV~I~~~Dt-------~RigaveQl~~--~~~ 467 (621)
.+|+++||++.+|+ +++|+||||||||||++.|+|++.| ++|+|.+.+.++ .+++++.|... +..
T Consensus 17 ~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 17 PLVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred ceecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 57999999999999 9999999999999999999999998 899999988764 24889998753 221
Q ss_pred hcc----cceeecCCCCC-HHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 RLQ----VPIFEKGYEKD-PAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ~L~----v~l~~~~~~~d-~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+. +.......+.. ....+.++++.+.... .+..+.++|||++|++.|+++|+ .+|+++|| ||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~lLlL-DEPt 168 (254)
T PRK10418 95 LHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALL-----CEAPFIIA-DEPT 168 (254)
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHh-----cCCCEEEE-eCCC
Confidence 111 00000011111 1233455555555443 24567789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+ ..+.+.|..+.+. .+.+++++|.-.+ . +....-.|+++..|.-+
T Consensus 169 ~~LD~~~~-~~l~~~L~~~~~~---~g~til~~sH~~~------~----~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 169 TDLDVVAQ-ARILDLLESIVQK---RALGMLLVTHDMG------V----VARLADDVAVMSHGRIV 220 (254)
T ss_pred cccCHHHH-HHHHHHHHHHHHh---cCcEEEEEecCHH------H----HHHhCCEEEEEECCEEE
Confidence 99999876 4566777776542 2567777765221 1 22223366777777654
No 188
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3e-19 Score=182.47 Aligned_cols=180 Identities=19% Similarity=0.219 Sum_probs=123.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|++++|++.+|+ +++|+||||||||||++.|+|++. |++|+|.+.+.++. ++|++.|...
T Consensus 20 ~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 20 QALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred eeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 58999999999999 999999999999999999999864 57999999886641 3888888653
Q ss_pred h-----hhhcccceeecCCCCC--HHHHHHHHHHHHhhcC-----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 465 H-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 465 ~-----~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~~-----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+ .+++...+...+.... ....+.++++.++... .+..+..+|||++|++.|+++|+ .+|+++|
T Consensus 98 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lll 172 (253)
T PRK14242 98 PFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA-----VEPEVLL 172 (253)
T ss_pred CCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 2 2222211111111111 1223334444433211 24556789999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||+|||+..+ ..+.+.|..+.. +.+++++|.- ... +....-.|+.+..|+-+
T Consensus 173 l-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tvii~tH~------~~~----~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14242 173 M-DEPASALDPIAT-QKIEELIHELKA-----RYTIIIVTHN------MQQ----AARVSDVTAFFYMGKLI 227 (253)
T ss_pred E-eCCcccCCHHHH-HHHHHHHHHHhc-----CCeEEEEEec------HHH----HHHhCCEEEEEECCEEE
Confidence 9 999999999886 455577777742 3466666641 111 22333466777777654
No 189
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=2.5e-19 Score=171.85 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=107.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~ 480 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++.+... .....+. +.
T Consensus 14 ~vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~---~~~~~~~--i~-------- 78 (163)
T cd03216 14 KALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP---RDARRAG--IA-------- 78 (163)
T ss_pred EEEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH---HHHHhcC--eE--------
Confidence 58999999999999 999999999999999999999999999999998866422100 0000000 00
Q ss_pred CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 481 d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
.+.++||||+|++.++++|. .+|+++|+ ||||+|+|...+ +.+.+.++.+.+.
T Consensus 79 --------------------~~~qLS~G~~qrl~laral~-----~~p~illl-DEP~~~LD~~~~-~~l~~~l~~~~~~ 131 (163)
T cd03216 79 --------------------MVYQLSVGERQMVEIARALA-----RNARLLIL-DEPTAALTPAEV-ERLFKVIRRLRAQ 131 (163)
T ss_pred --------------------EEEecCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCcCCCHHHH-HHHHHHHHHHHHC
Confidence 11229999999999999999 99999999 999999999886 4666777777532
Q ss_pred CCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 561 PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 561 ~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
+.+++++|.--. . +....-.+.++..|+-
T Consensus 132 ----~~tiii~sh~~~------~----~~~~~d~~~~l~~g~i 160 (163)
T cd03216 132 ----GVAVIFISHRLD------E----VFEIADRVTVLRDGRV 160 (163)
T ss_pred ----CCEEEEEeCCHH------H----HHHhCCEEEEEECCEE
Confidence 556777664211 1 2222336666666653
No 190
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.5e-19 Score=199.64 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEccccc----------ceeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----------FRSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~Dt----------~RigaveQl~~~~~ 467 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.| ++|+|.+.+.++ .++|+++|...+..
T Consensus 18 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 95 (506)
T PRK13549 18 VKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVK 95 (506)
T ss_pred eEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCC
Confidence 458999999999999 9999999999999999999999986 799999998764 13899998754332
Q ss_pred ------hcccceeecCCC-CCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 468 ------RLQVPIFEKGYE-KDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 468 ------~L~v~l~~~~~~-~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
++........+. .+. ...+.++++.++... .+..+.++||||+|++.||++|+ .+|+++|| ||
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~-----~~p~lllL-DE 169 (506)
T PRK13549 96 ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALN-----KQARLLIL-DE 169 (506)
T ss_pred CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 222221111001 111 233455566555543 36677899999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|||+..+. .+.+.|..+... +.++|++|. | ... +....-.|+++..|+-+
T Consensus 170 Pt~~LD~~~~~-~l~~~l~~l~~~----~~tvi~~tH-~-----~~~----~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 170 PTASLTESETA-VLLDIIRDLKAH----GIACIYISH-K-----LNE----VKAISDTICVIRDGRHI 222 (506)
T ss_pred CCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC-c-----HHH----HHHhcCEEEEEECCEEe
Confidence 99999999874 455777777532 556777764 2 112 22333367777777654
No 191
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.5e-19 Score=200.96 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=130.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHA--- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~--- 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++ .++|+++|...+.
T Consensus 18 ~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 18 VHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred eEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 358999999999999 9999999999999999999999999999999998764 1389999875332
Q ss_pred ---hhcccceeec--CCCC---C---HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 ---RRLQVPIFEK--GYEK---D---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ---~~L~v~l~~~--~~~~---d---~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+++.+..... .++. + ....+.++++.++... .+..+..+||||+||+.||++|+ .+|+++||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~-----~~p~lllL- 169 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM-----LDAKVIIM- 169 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2222211100 0111 1 1223445555555443 36677899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.+. +.++|++|. | ...+. ...-.|+++..|+-+
T Consensus 170 DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tiiivsH-d-----~~~~~----~~~d~v~~l~~G~i~ 224 (510)
T PRK09700 170 DEPTSSLTNKEVD-YLFLIMNQLRKE----GTAIVYISH-K-----LAEIR----RICDRYTVMKDGSSV 224 (510)
T ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC-C-----HHHHH----HhCCEEEEEECCEEe
Confidence 9999999999874 555777777542 567777775 2 22222 223367777777653
No 192
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3.7e-19 Score=181.76 Aligned_cols=181 Identities=20% Similarity=0.202 Sum_probs=125.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.| ..|+|.+.+.++. +++++.|..
T Consensus 17 ~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (253)
T PRK14267 17 NHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP 94 (253)
T ss_pred eeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence 358999999999999 9999999999999999999999987 4899999887642 378888865
Q ss_pred hhhh------hcccceeecCCCCCHH---HHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 THAR------RLQVPIFEKGYEKDPA---IVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 ~~~~------~L~v~l~~~~~~~d~~---~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
.+.. ++.............. ..+.++++.+... ..+..+..+|||++|++.|+++|. .+|+
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 169 (253)
T PRK14267 95 NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA-----MKPK 169 (253)
T ss_pred ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh-----cCCC
Confidence 3322 2221111011111111 2233444443321 235567789999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|| ||||+|||+..+ ..+.+.|..+.. +.++|++|.- ...+. ...-.|+++..|+-+
T Consensus 170 llll-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sH~------~~~~~----~~~d~i~~l~~G~i~ 227 (253)
T PRK14267 170 ILLM-DEPTANIDPVGT-AKIEELLFELKK-----EYTIVLVTHS------PAQAA----RVSDYVAFLYLGKLI 227 (253)
T ss_pred EEEE-cCCCccCCHHHH-HHHHHHHHHHhh-----CCEEEEEECC------HHHHH----hhCCEEEEEECCEEE
Confidence 9999 999999999876 455577777643 3566776642 22222 223367777777754
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.6e-19 Score=200.72 Aligned_cols=195 Identities=14% Similarity=0.164 Sum_probs=136.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccc----------eeeeeehhhh---h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTF----------RSGAVEQLRT---H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~----------RigaveQl~~---~ 465 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++ |++|+|.+.+.++. ++|++.|... +
T Consensus 275 ~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 352 (506)
T PRK13549 275 IKRVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGI 352 (506)
T ss_pred cccccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCC
Confidence 458999999999999 999999999999999999999998 59999999886641 3899998742 2
Q ss_pred ------hhhcccceeecCCC---CC---HHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 466 ------ARRLQVPIFEKGYE---KD---PAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 466 ------~~~L~v~l~~~~~~---~d---~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+++.+......+. .+ ....+.++++.+... ..+..+.++||||+|++.||++|+ .+|+++
T Consensus 353 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~-----~~p~ll 427 (506)
T PRK13549 353 VPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL-----LNPKIL 427 (506)
T ss_pred cCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh-----hCCCEE
Confidence 22222211100000 01 123345566666553 246778899999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKK 609 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~ 609 (621)
|| ||||+|||+..+. .+.+.+..+++. +.++|++|.- . -. +....-.++++..|+-+. +...
T Consensus 428 lL-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tvi~~sHd-~-----~~----~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 428 IL-DEPTRGIDVGAKY-EIYKLINQLVQQ----GVAIIVISSE-L-----PE----VLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred EE-cCCCCCcCHhHHH-HHHHHHHHHHHC----CCEEEEECCC-H-----HH----HHHhCCEEEEEECCEEEEEecccc
Confidence 99 9999999999874 555777777642 5677887762 1 11 223334677888887653 2334
Q ss_pred CCHHHHHH
Q 007024 610 LNVKSIVK 617 (621)
Q Consensus 610 ~~~~~~v~ 617 (621)
+..+.+..
T Consensus 492 ~~~~~~~~ 499 (506)
T PRK13549 492 LTQEQVME 499 (506)
T ss_pred CCHHHHHH
Confidence 44455543
No 194
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.81 E-value=2.6e-19 Score=182.93 Aligned_cols=179 Identities=19% Similarity=0.170 Sum_probs=125.1
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh------h
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH------A 466 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~------~ 466 (621)
+|+++||++.+|+ +++|+||||||||||+++|+|++. .+|+|.+.+.++. ++|++.|...+ .
T Consensus 11 ~l~~vsl~i~~Ge--i~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE--ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6899999999999 999999999999999999999885 5899999987752 27888886422 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcC-------CCcEEEEEeCCc
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN-------NPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~-------~PdlILLVDEpt 538 (621)
+++.+..............+.++++.+++.. .+..+..+|||++|++.|+++|+ . +|+++|| ||||
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~~~~~~p~p~llll-DEPt 161 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL-----QVWPDINPAGQLLLL-DEPM 161 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh-----ccccccCCCCCEEEE-cCCc
Confidence 2222211100001111233445555554433 25677889999999999999999 6 6688888 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+ ..+.+.|..+... +.++|++|.- ...+ ....-.|.++..|+-+
T Consensus 162 ~~LD~~~~-~~l~~~L~~~~~~----~~tvi~~sH~------~~~~----~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 162 NSLDVAQQ-AALDRLLSELCQQ----GIAVVMSSHD------LNHT----LRHADRVWLLKQGKLL 212 (248)
T ss_pred ccCCHHHH-HHHHHHHHHHHhC----CCEEEEEecC------HHHH----HHhCCEEEEEECCEEE
Confidence 99999986 4666777777542 5667777642 1122 2233477778777754
No 195
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.81 E-value=2e-19 Score=184.27 Aligned_cols=182 Identities=20% Similarity=0.168 Sum_probs=129.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++++|.+.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+.+.++. +++++.|...+
T Consensus 14 ~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 14 RLIVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 358999999999999 99999999999999999999999999999999987642 37888886422
Q ss_pred -hhhcccceee--cCCC--C-CHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 466 -ARRLQVPIFE--KGYE--K-DPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 466 -~~~L~v~l~~--~~~~--~-d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+++...... ..+. . .....+.++++.+.... .+..+..+|||++|++.|+++|. .+|+++|| ||||
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~llll-DEPt 165 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALA-----QEPKLLLL-DEPT 165 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-cCcc
Confidence 2222111100 0011 1 11223445555544433 36677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+|+..+ ..+.+.|..+... +.+++++|.- ... +....-.|+++..|+.+
T Consensus 166 ~~LD~~~~-~~l~~~l~~~~~~----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 166 NHLDVRAQ-LETLALVRELAAT----GVTVVAALHD------LNL----AASYCDHVVVLDGGRVV 216 (256)
T ss_pred ccCCHHHH-HHHHHHHHHHHhc----CCEEEEEeCC------HHH----HHHhCCEEEEEeCCCEE
Confidence 99999876 4666777777532 4566776642 111 23334477888888765
No 196
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.81 E-value=1.2e-19 Score=181.47 Aligned_cols=175 Identities=22% Similarity=0.186 Sum_probs=121.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~---- 466 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|.+|+|.+.+.++ .+++++.|...+.
T Consensus 17 ~~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTL 94 (220)
T ss_pred cccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchH
Confidence 358999999999999 9999999999999999999999999999999988654 1488888875432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhcCC-Cc-----------cccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DV-----------VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~-----------vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++... .. .... ..+.++++.+...+. +. .+.++|||++|++.|+++|+ .+|+++||
T Consensus 95 ~e~l~~~--~~--~~~~-~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~-----~~p~llll 164 (220)
T cd03245 95 RDNITLG--AP--LADD-ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALL-----NDPPILLL 164 (220)
T ss_pred HHHhhcC--CC--CCCH-HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 222111 00 1111 122233333222111 11 23589999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.|..+.. ..++|++|.- ... +. ..-.|..+..|+-+
T Consensus 165 -DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sH~------~~~-~~----~~d~v~~l~~g~i~ 217 (220)
T cd03245 165 -DEPTSAMDMNSE-ERLKERLRQLLG-----DKTLIIITHR------PSL-LD----LVDRIIVMDSGRIV 217 (220)
T ss_pred -eCccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEeCC------HHH-HH----hCCEEEEEeCCeEe
Confidence 999999999987 455577776643 2466666642 111 12 23467777777643
No 197
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.5e-19 Score=188.28 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=118.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcC---cEEEEcccccc---------eeeeeehhhh----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---VSVMMAACDTF---------RSGAVEQLRT---- 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~---GkV~I~~~Dt~---------RigaveQl~~---- 464 (621)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.|.. |+|.+.+.++. ++|+++|...
T Consensus 21 ~~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 21 PALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred cceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 48999999999999 999999999999999999999999886 89999987652 4899988752
Q ss_pred ---hhhhcccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 465 ---HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 465 ---~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
..+++... ...++.... ..+.++++.+.+.. .+..+..+|||++|++.|+++|+ .+|+++|+ |||
T Consensus 99 ~~tv~enl~~~--~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~-----~~P~llll-DEP 170 (282)
T PRK13640 99 GATVGDDVAFG--LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA-----VEPKIIIL-DES 170 (282)
T ss_pred cCCHHHHHHhh--HHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECC
Confidence 12222111 111122222 23444455444433 25677899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+|||+..+. .+.+.|..+... .+.+++++|.
T Consensus 171 t~gLD~~~~~-~l~~~l~~l~~~---~g~tvli~tH 202 (282)
T PRK13640 171 TSMLDPAGKE-QILKLIRKLKKK---NNLTVISITH 202 (282)
T ss_pred cccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 9999999874 555777776542 2567777774
No 198
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.6e-19 Score=182.33 Aligned_cols=162 Identities=20% Similarity=0.177 Sum_probs=119.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhccc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV- 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~v- 471 (621)
..++++++|++.+|+ +++|+||||+|||||+++|+|+++|..|+|.+.+.++. ++|++.|.......+.+
T Consensus 13 ~~il~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGE--FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 358999999999999 99999999999999999999999999999999887652 48888887543322211
Q ss_pred ---ceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 472 ---PIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 472 ---~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
.+....++.+. ...+..+++.++... .+..+.++|||++|++.|+++|. .+|+++|| |||++|+|+.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p~llll-DEP~~gLD~~ 164 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV-----NEPKVLLL-DEPLGALDLK 164 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 10000111111 122334444444433 35667889999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+ ..|.+.+..+.+. .+.+++++|.
T Consensus 165 ~~-~~l~~~l~~~~~~---~~~tiii~sh 189 (232)
T cd03300 165 LR-KDMQLELKRLQKE---LGITFVFVTH 189 (232)
T ss_pred HH-HHHHHHHHHHHHH---cCCEEEEEeC
Confidence 86 5676788777642 1566777764
No 199
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.7e-19 Score=186.26 Aligned_cols=181 Identities=18% Similarity=0.095 Sum_probs=126.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-hhhhc-
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-HARRL- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~-~~~~L- 469 (621)
.+|+++||++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++|++.|... +....
T Consensus 23 ~~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 23 FTLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred cceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 48999999999999 99999999999999999999999999999999987651 3888888752 11111
Q ss_pred ---ccceeecCCCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 ---QVPIFEKGYEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 ---~v~l~~~~~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
++.+.......... ..+.++++.+.... .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||
T Consensus 101 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~lllL-DEPt~~LD 174 (269)
T PRK13648 101 VKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLA-----LNPSVIIL-DEATSMLD 174 (269)
T ss_pred HHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCC
Confidence 11110001111111 23334455444332 35677889999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+. .+.+.+..+... .+.++|++|.--+ . +.. .-.|+++..|+-+
T Consensus 175 ~~~~~-~l~~~L~~~~~~---~~~tiiivtH~~~------~----~~~-~d~i~~l~~G~i~ 221 (269)
T PRK13648 175 PDARQ-NLLDLVRKVKSE---HNITIISITHDLS------E----AME-ADHVIVMNKGTVY 221 (269)
T ss_pred HHHHH-HHHHHHHHHHHh---cCCEEEEEecCch------H----Hhc-CCEEEEEECCEEE
Confidence 99864 555777776542 2566777765221 1 111 3366666666654
No 200
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=200.53 Aligned_cols=193 Identities=13% Similarity=0.171 Sum_probs=136.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhh-------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLR------- 463 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~------- 463 (621)
.+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++ .++|+++|..
T Consensus 277 ~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 354 (510)
T PRK09700 277 KKVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFP 354 (510)
T ss_pred CcccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcC
Confidence 37999999999999 9999999999999999999999999999999988654 1389999852
Q ss_pred --hhhhhcccceee--cCC----C---C-CHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 --THARRLQVPIFE--KGY----E---K-DPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 --~~~~~L~v~l~~--~~~----~---~-d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
+..+++...... ..+ + . .....+.++++.+... + .+..+.++||||+|++.||++|+ .+|+
T Consensus 355 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~ 429 (510)
T PRK09700 355 NFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC-----CCPE 429 (510)
T ss_pred CCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh-----cCCC
Confidence 122222222110 000 1 0 1112345666666653 3 46778899999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcc--
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL-- 607 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL-- 607 (621)
++|| ||||+|||+..+ ..+.+.|..+... +.++|++|. | ... +....-.|+++..|+-+.+.
T Consensus 430 lLlL-DEPt~~LD~~~~-~~l~~~l~~l~~~----g~tvi~vsH-d-----~~~----~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 430 VIIF-DEPTRGIDVGAK-AEIYKVMRQLADD----GKVILMVSS-E-----LPE----IITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEE-CCCCCCcCHHHH-HHHHHHHHHHHHC----CCEEEEEcC-C-----HHH----HHhhCCEEEEEECCEEEEEecC
Confidence 9999 999999999986 4555777777542 567788775 2 112 33334467788888755322
Q ss_pred -cCCCHHHHH
Q 007024 608 -KKLNVKSIV 616 (621)
Q Consensus 608 -~~~~~~~~v 616 (621)
..++.+.+.
T Consensus 494 ~~~~~~~~~~ 503 (510)
T PRK09700 494 RDDMSEEEIM 503 (510)
T ss_pred cccCCHHHHH
Confidence 344455443
No 201
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.6e-19 Score=196.56 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=154.2
Q ss_pred HcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehh
Q 007024 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQL 462 (621)
Q Consensus 393 il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl 462 (621)
+-.....+.+|++|+|++.+|+ +++|+|.||||||||++.|+|.+.|++|+|.+.|.... -|+.|.|.
T Consensus 14 i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QE 91 (500)
T COG1129 14 ISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQE 91 (500)
T ss_pred ceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeec
Confidence 3334456789999999999999 99999999999999999999999999999999987652 28899998
Q ss_pred hhhhhhccc----ceeec----CCCCCHH---HHHHHHHHHHhh-cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 463 RTHARRLQV----PIFEK----GYEKDPA---IVAKEAIQEATR-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 463 ~~~~~~L~v----~l~~~----~~~~d~~---~ia~~al~~~~~-~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
-.++.+|.| -+... ..--|.. ..+.+++..+.. .+.+..+.++|++++|-++|||+|. .++.+
T Consensus 92 l~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~-----~~arl 166 (500)
T COG1129 92 LSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS-----FDARV 166 (500)
T ss_pred hhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh-----cCCCE
Confidence 766666532 11100 0112223 334444444333 2367788899999999999999999 89999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCCC--c-
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D- 606 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--D- 606 (621)
+|| ||||+.|+.......| +.++++... ++.+|++|+ +|+ +..++. .|..+-+|+.+. +
T Consensus 167 lIl-DEPTaaLt~~E~~~Lf-~~ir~Lk~~----Gv~ii~ISHrl~E-------i~~i~D----ritVlRDG~~v~~~~~ 229 (500)
T COG1129 167 LIL-DEPTAALTVKETERLF-DLIRRLKAQ----GVAIIYISHRLDE-------VFEIAD----RITVLRDGRVVGTRPT 229 (500)
T ss_pred EEE-cCCcccCCHHHHHHHH-HHHHHHHhC----CCEEEEEcCcHHH-------HHHhcC----EEEEEeCCEEeeeccc
Confidence 999 9999999998865555 788888764 677777663 444 344444 889999999985 5
Q ss_pred ccCCCHHHHHHHh
Q 007024 607 LKKLNVKSIVKTL 619 (621)
Q Consensus 607 L~~~~~~~~v~~L 619 (621)
+..++.+++|..+
T Consensus 230 ~~~~~~~~lv~~M 242 (500)
T COG1129 230 AAETSEDELVRLM 242 (500)
T ss_pred ccCCCHHHHHHHh
Confidence 6799999999865
No 202
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.81 E-value=1.8e-19 Score=180.47 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=119.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|+++||.+.+|+ +++|+||||+|||||++.|+|+++|++|+|.+.+.++. ++++++|...+..
T Consensus 18 ~~il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 458999999999999 99999999999999999999999999999999887642 3888888764433
Q ss_pred hcc----cceeecCCC-CCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 RLQ----VPIFEKGYE-KDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ~L~----v~l~~~~~~-~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
.+. +.+....+. ... ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| |||+
T Consensus 96 ~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~-----~~p~illl-DEP~ 169 (220)
T TIGR02982 96 FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALV-----HRPKLVLA-DEPT 169 (220)
T ss_pred CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCC
Confidence 221 111111111 111 123444555544433 25667889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|+|+..+. .+.+.|..+... .+.+++++|.
T Consensus 170 ~~LD~~~~~-~l~~~l~~~~~~---~~~tii~~sh 200 (220)
T TIGR02982 170 AALDSKSGR-DVVELMQKLARE---QGCTILIVTH 200 (220)
T ss_pred CcCCHHHHH-HHHHHHHHHHHH---cCCEEEEEeC
Confidence 999998864 555677766532 2567777775
No 203
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.2e-19 Score=182.07 Aligned_cols=181 Identities=18% Similarity=0.186 Sum_probs=125.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| ++|+|.+.+.++. ++|++.|..
T Consensus 32 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 32 KQALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 358999999999999 9999999999999999999999874 8999999986642 378888864
Q ss_pred hh-----hhhcccceeecCC--C-CCHHHHHHHHHHHHhhcC-----CCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 TH-----ARRLQVPIFEKGY--E-KDPAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~--~-~d~~~ia~~al~~~~~~~-----~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.. .+++.......+. . ......+.++++.++... .+..+..+|||++|++.|+++|+ .+|++
T Consensus 110 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~l 184 (267)
T PRK14235 110 NPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA-----VSPEV 184 (267)
T ss_pred CCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH-----cCCCE
Confidence 32 2222211110111 0 111223344444443321 24456789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|||+..+. .+.+.|..+.. +.++|++|. .... +....-.++++..|+-+
T Consensus 185 llL-DEPt~~LD~~~~~-~l~~~L~~l~~-----~~tiiivtH------~~~~----~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 185 ILM-DEPCSALDPIATA-KVEELIDELRQ-----NYTIVIVTH------SMQQ----AARVSQRTAFFHLGNLV 241 (267)
T ss_pred EEE-eCCCcCCCHHHHH-HHHHHHHHHhc-----CCeEEEEEc------CHHH----HHhhCCEEEEEECCEEE
Confidence 999 9999999998864 55577777643 346666664 1222 22333367777777654
No 204
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.80 E-value=2.6e-19 Score=174.46 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=102.7
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhccc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L~v 471 (621)
+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. +++++.|.....
T Consensus 15 ~l~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~----- 87 (182)
T cd03215 15 AVRDVSFEVRAGE--IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKRE----- 87 (182)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccC-----
Confidence 7899999999999 99999999999999999999999999999999987652 245555432100
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
.++. .. ...+.+..... +||||+|++.|+++|. .+|+++|| |||++|+|+..+ ..+.
T Consensus 88 ~~~~---~~----t~~e~l~~~~~---------LS~G~~qrl~la~al~-----~~p~llll-DEP~~~LD~~~~-~~l~ 144 (182)
T cd03215 88 GLVL---DL----SVAENIALSSL---------LSGGNQQKVVLARWLA-----RDPRVLIL-DEPTRGVDVGAK-AEIY 144 (182)
T ss_pred cccC---CC----cHHHHHHHHhh---------cCHHHHHHHHHHHHHc-----cCCCEEEE-CCCCcCCCHHHH-HHHH
Confidence 0000 00 01111111110 8999999999999999 99999999 999999999986 4566
Q ss_pred HHHHHhhcCCCCCCceEEEecc
Q 007024 552 QKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+..+... +.+.|++|.
T Consensus 145 ~~l~~~~~~----~~tiii~sh 162 (182)
T cd03215 145 RLIRELADA----GKAVLLISS 162 (182)
T ss_pred HHHHHHHHC----CCEEEEEeC
Confidence 777777542 456677665
No 205
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.80 E-value=2.8e-19 Score=172.81 Aligned_cols=131 Identities=23% Similarity=0.254 Sum_probs=102.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhcc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~ 470 (621)
..++++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. +++++.|...+.
T Consensus 15 ~~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~---- 88 (173)
T cd03246 15 PPVLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELF---- 88 (173)
T ss_pred CcceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccc----
Confidence 358999999999999 99999999999999999999999999999999987652 244444432110
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 471 VPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 471 v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
. ..+ .+ . . +|||++|++.|+++|+ .+|+++|| ||||+|+|+..+. .+
T Consensus 89 --------~---~tv-~~---~-----l------LS~G~~qrv~la~al~-----~~p~~lll-DEPt~~LD~~~~~-~l 135 (173)
T cd03246 89 --------S---GSI-AE---N-----I------LSGGQRQRLGLARALY-----GNPRILVL-DEPNSHLDVEGER-AL 135 (173)
T ss_pred --------c---CcH-HH---H-----C------cCHHHHHHHHHHHHHh-----cCCCEEEE-ECCccccCHHHHH-HH
Confidence 0 001 11 0 0 8999999999999999 99999999 9999999999874 55
Q ss_pred HHHHHHhhcCCCCCCceEEEecc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+..+.+. +.+++++|.
T Consensus 136 ~~~l~~~~~~----~~tii~~sh 154 (173)
T cd03246 136 NQAIAALKAA----GATRIVIAH 154 (173)
T ss_pred HHHHHHHHhC----CCEEEEEeC
Confidence 5777777542 566777764
No 206
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.80 E-value=2.8e-19 Score=182.67 Aligned_cols=182 Identities=22% Similarity=0.203 Sum_probs=125.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc-----cc-------------eeeeeehh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-----TF-------------RSGAVEQL 462 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D-----t~-------------RigaveQl 462 (621)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.+ +. +++++.|.
T Consensus 17 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (253)
T TIGR02323 17 KGCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQN 94 (253)
T ss_pred eEeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeC
Confidence 57999999999999 999999999999999999999999999999998765 21 27888886
Q ss_pred hhhh--------hhcccceeecCCC--CCHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 463 RTHA--------RRLQVPIFEKGYE--KDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 463 ~~~~--------~~L~v~l~~~~~~--~d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
..+. +++...+...... ......+.+.++.+... ..+..+..+|||++|++.|+++|+ .+|++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~v 169 (253)
T TIGR02323 95 PRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV-----TRPRL 169 (253)
T ss_pred cccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh-----cCCCE
Confidence 4211 1110000000000 01122334445554442 235567789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|||+..+ +.+.+.+..+... .+.++|++|.-- ..+ ....-.++++..|+-+
T Consensus 170 lll-DEP~~~LD~~~~-~~l~~~l~~~~~~---~~~tii~vsH~~------~~~----~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 170 VFM-DEPTGGLDVSVQ-ARLLDLLRGLVRD---LGLAVIIVTHDL------GVA----RLLAQRLLVMQQGRVV 228 (253)
T ss_pred EEE-cCCCccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeCCH------HHH----HHhcCEEEEEECCEEE
Confidence 999 999999999986 4555677666432 256777777522 122 2222356667776654
No 207
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.80 E-value=1.9e-19 Score=181.96 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=124.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~---- 466 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.|.+|+|.+.+.++ .++|+++|...+.
T Consensus 15 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSI 92 (237)
T ss_pred ccceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchH
Confidence 458999999999999 9999999999999999999999999999999998764 1388998875432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHH------Hhhc--C----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQE------ATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~------~~~~--~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++.+. .. ......+ .++++. +... + .+..+.++||||+|++.|+++|+ .+|+++||
T Consensus 93 ~~nl~~~--~~--~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll 162 (237)
T cd03252 93 RDNIALA--DP--GMSMERV-IEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALI-----HNPRILIF 162 (237)
T ss_pred HHHhhcc--CC--CCCHHHH-HHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 222111 11 1111111 111111 1100 1 13456789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+|||+..+. .+.+.|..+.. +.+++++|.- .-. +.. .-.|+++..|+.+.
T Consensus 163 -DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH~------~~~----~~~-~d~v~~l~~G~i~~ 216 (237)
T cd03252 163 -DEATSALDYESEH-AIMRNMHDICA-----GRTVIIIAHR------LST----VKN-ADRIIVMEKGRIVE 216 (237)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEeCC------HHH----HHh-CCEEEEEECCEEEE
Confidence 9999999999874 55567766642 4567776642 111 122 34788888888763
No 208
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.80 E-value=1.9e-19 Score=182.40 Aligned_cols=161 Identities=15% Similarity=0.136 Sum_probs=115.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcCcEEEEcccccc--------e--eeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~GkV~I~~~Dt~--------R--igaveQl~~~~~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++ .|++|+|.+.+.++. + ++++.|...+..
T Consensus 13 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (243)
T TIGR01978 13 KEILKGVNLTVKKGE--IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIP 90 (243)
T ss_pred EEEEeccceEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccC
Confidence 358999999999999 99999999999999999999995 689999999987641 2 678888754322
Q ss_pred hc------ccceee-cCC----CCCH---HHHHHHHHHHHhhc-C-CCcccc-ccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 468 RL------QVPIFE-KGY----EKDP---AIVAKEAIQEATRN-G-SDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 468 ~L------~v~l~~-~~~----~~d~---~~ia~~al~~~~~~-~-~d~vli-DtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+ ...... ... ..+. ...+.++++.++.. . .+..+. ++|||++|++.|+++|+ .+|++
T Consensus 91 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~-----~~p~l 165 (243)
T TIGR01978 91 GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL-----LEPKL 165 (243)
T ss_pred CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh-----cCCCE
Confidence 21 111000 000 0011 12334445544443 2 244454 59999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|| ||||+|||+..+ ..+.+.|..+.+. +.++|++|.
T Consensus 166 lll-DEPt~~LD~~~~-~~l~~~l~~~~~~----~~tvi~vsH 202 (243)
T TIGR01978 166 AIL-DEIDSGLDIDAL-KIVAEGINRLREP----DRSFLIITH 202 (243)
T ss_pred EEe-cCCcccCCHHHH-HHHHHHHHHHHHC----CcEEEEEEe
Confidence 999 999999999886 4666777777542 456677664
No 209
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.3e-19 Score=181.11 Aligned_cols=179 Identities=16% Similarity=0.208 Sum_probs=126.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. ++++++|..
T Consensus 26 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 26 FHALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred eEEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 358999999999999 999999999999999999999986 47899999886641 388998875
Q ss_pred hhhh-----hcccceeecCC-CCCH---HHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 THAR-----RLQVPIFEKGY-EKDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 ~~~~-----~L~v~l~~~~~-~~d~---~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
.+.. ++.... ..+ .... ...+.++++.++.. ..+..+..+|||++|++.|+++|+ .+|+
T Consensus 104 ~~~~~tv~~nl~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ 176 (260)
T PRK10744 104 TPFPMSIYDNIAFGV--RLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA-----IRPE 176 (260)
T ss_pred ccCcCcHHHHHhhhH--hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH-----CCCC
Confidence 3322 221111 001 1111 12334455544321 124567789999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|| ||||+|||+..+ ..|.+.|..+.. +.++|++|.- ...+ ....-.|+++..|+-+
T Consensus 177 lllL-DEPt~~LD~~~~-~~l~~~L~~~~~-----~~tiii~sH~------~~~~----~~~~d~i~~l~~G~i~ 234 (260)
T PRK10744 177 VLLL-DEPCSALDPIST-GRIEELITELKQ-----DYTVVIVTHN------MQQA----ARCSDYTAFMYLGELI 234 (260)
T ss_pred EEEE-cCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeCC------HHHH----HHhCCEEEEEECCEEE
Confidence 9999 999999999876 456677777742 3467777642 2222 2333477788888765
No 210
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.5e-19 Score=172.17 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=103.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~v~ 472 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++. ++++++|...+...+
T Consensus 14 ~~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 88 (173)
T cd03230 14 TALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL--- 88 (173)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCC---
Confidence 58999999999999 99999999999999999999999999999999987652 255555542211000
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~ 552 (621)
.+ .+.+ .+|||++|++.|+++|+ .+|+++|+ ||||+|||+..+. .+.+
T Consensus 89 -----------tv-~~~~-------------~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~~~~-~l~~ 136 (173)
T cd03230 89 -----------TV-RENL-------------KLSGGMKQRLALAQALL-----HDPELLIL-DEPTSGLDPESRR-EFWE 136 (173)
T ss_pred -----------cH-HHHh-------------hcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCHHHHH-HHHH
Confidence 00 1111 09999999999999999 99999999 9999999998874 5557
Q ss_pred HHHHhhcCCCCCCceEEEecc
Q 007024 553 KLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK 573 (621)
.+..+.+. +.+.+++|.
T Consensus 137 ~l~~~~~~----g~tiii~th 153 (173)
T cd03230 137 LLRELKKE----GKTILLSSH 153 (173)
T ss_pred HHHHHHHC----CCEEEEECC
Confidence 77777542 456777764
No 211
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.80 E-value=2.5e-19 Score=184.22 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=118.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcccccc--------------eeeeeehh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF--------------RSGAVEQL 462 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt~--------------RigaveQl 462 (621)
..+|++++|.+.+|+ +++|+||||||||||++.|+|++.|+ +|+|.+.|.++. ++++++|.
T Consensus 17 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 17 HQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQ 94 (262)
T ss_pred eEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccc
Confidence 458999999999999 99999999999999999999999876 499999986642 37888886
Q ss_pred hhhhh------hcccceeec------CC---CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcC
Q 007024 463 RTHAR------RLQVPIFEK------GY---EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 463 ~~~~~------~L~v~l~~~------~~---~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~ 526 (621)
..+.. ++....... .. .......+.++++.++... .+..+.++|||++|++.|+++|. .
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~ 169 (262)
T PRK09984 95 FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALM-----Q 169 (262)
T ss_pred cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHh-----c
Confidence 53322 221111000 00 1111233445555554433 35677889999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|+++|| ||||+|||...+ ..+.+.|..+... .+.++|++|.
T Consensus 170 ~p~llll-DEPt~~LD~~~~-~~l~~~l~~~~~~---~g~tvii~tH 211 (262)
T PRK09984 170 QAKVILA-DEPIASLDPESA-RIVMDTLRDINQN---DGITVVVTLH 211 (262)
T ss_pred CCCEEEe-cCccccCCHHHH-HHHHHHHHHHHHh---cCCEEEEEeC
Confidence 9999999 999999999886 4666778777642 2567777764
No 212
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.80 E-value=3.6e-19 Score=199.32 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=136.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhh-------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLR------- 463 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~------- 463 (621)
.+|++++|++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++.|..
T Consensus 266 ~~l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 36899999999999 9999999999999999999999999999999988664 1389999874
Q ss_pred --hhhhhcccceeecC---CC-C---CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 464 --THARRLQVPIFEKG---YE-K---DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 464 --~~~~~L~v~l~~~~---~~-~---d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+..+++..+..... ++ . .....+.++++.+... ..+..+.++||||+|++.||++|+ .+|+++|
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~-----~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM-----TRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHh-----hCCCEEE
Confidence 12222222111000 01 1 1123345566666552 246778899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKKL 610 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~ 610 (621)
| ||||+|||+..+ ..+.+.|..+... +.++|++|. | ...+ ....-.|+++..|+-+. ....+
T Consensus 419 L-DEPt~~LD~~~~-~~l~~~l~~~~~~----g~tviivtH-d-----~~~~----~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 419 L-DEPTRGVDVGAK-KEIYQLINQFKAE----GLSIILVSS-E-----MPEV----LGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred E-cCCCCCCCHhHH-HHHHHHHHHHHHC----CCEEEEEcC-C-----HHHH----HhhCCEEEEEECCEEEEEeccccC
Confidence 9 999999999987 4555788777642 567778775 2 2222 23344788888887542 33444
Q ss_pred CHHHHH
Q 007024 611 NVKSIV 616 (621)
Q Consensus 611 ~~~~~v 616 (621)
....++
T Consensus 483 ~~~~~~ 488 (501)
T PRK10762 483 TQEKLM 488 (501)
T ss_pred CHHHHH
Confidence 444444
No 213
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.9e-19 Score=181.04 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=122.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL-- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L-- 469 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|.+|+|.+.+.++ .++++++|...+...-
T Consensus 17 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 94 (229)
T cd03254 17 PVLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIM 94 (229)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHH
Confidence 48999999999999 9999999999999999999999999999999988654 1388998876432210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHH------hhc--CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEA------TRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~------~~~--~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
++.++... .... .+.++++.. ... ++ +..+..+|||++|++.|+++|+ .+|+++|| ||
T Consensus 95 ~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~-----~~p~llll-DE 165 (229)
T cd03254 95 ENIRLGRPN--ATDE-EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML-----RDPKILIL-DE 165 (229)
T ss_pred HHHhccCCC--CCHH-HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 11111111 1111 112222211 110 11 2345789999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|||+..+. .+.+.+..+.. +.+++++|.-.. . +.. .-.|+.+..|+-+
T Consensus 166 P~~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sh~~~------~----~~~-~d~i~~l~~g~~~ 216 (229)
T cd03254 166 ATSNIDTETEK-LIQEALEKLMK-----GRTSIIIAHRLS------T----IKN-ADKILVLDDGKII 216 (229)
T ss_pred ccccCCHHHHH-HHHHHHHHhcC-----CCEEEEEecCHH------H----Hhh-CCEEEEEeCCeEE
Confidence 99999999864 55567766632 456777775221 1 111 3467778788754
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=3.7e-19 Score=199.09 Aligned_cols=196 Identities=14% Similarity=0.173 Sum_probs=137.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEEcccccc----------eeeeeehhhh---h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTF----------RSGAVEQLRT---H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I~~~Dt~----------RigaveQl~~---~ 465 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.| ++|+|.+.+.++. ++|++.|... +
T Consensus 273 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l 350 (500)
T TIGR02633 273 RKRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGI 350 (500)
T ss_pred ccccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCc
Confidence 358999999999999 9999999999999999999999985 8999999886541 3899998752 2
Q ss_pred h------hhcccceeecC---CCCC---HHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 466 A------RRLQVPIFEKG---YEKD---PAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 466 ~------~~L~v~l~~~~---~~~d---~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
. +++........ +... ....+.++++.+.... .+..+.++||||+|++.||++|+ .+|+++
T Consensus 351 ~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~-----~~p~ll 425 (500)
T TIGR02633 351 VPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL-----TNPRVL 425 (500)
T ss_pred CCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh-----hCCCEE
Confidence 2 22222111000 0111 1233455666665532 36778899999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKK 609 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~ 609 (621)
|| ||||+|||+..+. .+.+.+..+.+. +.++|++|. | ... +....-.|+++..|+-+. +-..
T Consensus 426 lL-DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tviivsH-d-----~~~----~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 426 IL-DEPTRGVDVGAKY-EIYKLINQLAQE----GVAIIVVSS-E-----LAE----VLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EE-cCCCCCcCHhHHH-HHHHHHHHHHhC----CCEEEEECC-C-----HHH----HHHhCCEEEEEECCEEEEEEcccc
Confidence 99 9999999999864 555677777542 566777775 2 222 223344677777777664 3345
Q ss_pred CCHHHHHHH
Q 007024 610 LNVKSIVKT 618 (621)
Q Consensus 610 ~~~~~~v~~ 618 (621)
++...++..
T Consensus 490 ~~~~~~~~~ 498 (500)
T TIGR02633 490 LTQEQVLAA 498 (500)
T ss_pred CCHHHHHHh
Confidence 555555543
No 215
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.8e-19 Score=206.80 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=129.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--------------------c---ee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--------------------F---RS 456 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--------------------~---Ri 456 (621)
..+|++|||++.+|+ +++|||+||||||||+++|+|++.|.+|+|.+.+.+. + ++
T Consensus 29 ~~~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i 106 (623)
T PRK10261 29 IAAVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM 106 (623)
T ss_pred eeEEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE
Confidence 468999999999999 9999999999999999999999999999998866311 1 48
Q ss_pred eeeehhh--------hhhhhcccceee-cCCCC-CHHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhh
Q 007024 457 GAVEQLR--------THARRLQVPIFE-KGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKL 522 (621)
Q Consensus 457 gaveQl~--------~~~~~L~v~l~~-~~~~~-d~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l 522 (621)
|+++|.. +..+++...+.. .+... +....+.++++.+++.. .+..+..+||||+||+.||++|+
T Consensus 107 g~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~-- 184 (623)
T PRK10261 107 AMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS-- 184 (623)
T ss_pred EEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh--
Confidence 9999964 122222222111 01111 11233445555555432 35677889999999999999999
Q ss_pred hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCC
Q 007024 523 IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQ 602 (621)
Q Consensus 523 ~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq 602 (621)
.+|+++|| ||||++||+..+. .+.+.++.+... .+.++|++|. ....+..+ .-.|+++-.|+
T Consensus 185 ---~~P~lLll-DEPt~~LD~~~~~-~l~~ll~~l~~~---~g~tvi~itH------dl~~~~~~----adri~vl~~G~ 246 (623)
T PRK10261 185 ---CRPAVLIA-DEPTTALDVTIQA-QILQLIKVLQKE---MSMGVIFITH------DMGVVAEI----ADRVLVMYQGE 246 (623)
T ss_pred ---CCCCEEEE-eCCCCccCHHHHH-HHHHHHHHHHHh---cCCEEEEEcC------CHHHHHHh----CCEEEEeeCCe
Confidence 99999999 9999999999875 444677777542 2667788774 23333333 33677777776
Q ss_pred CC
Q 007024 603 SY 604 (621)
Q Consensus 603 ~v 604 (621)
-+
T Consensus 247 i~ 248 (623)
T PRK10261 247 AV 248 (623)
T ss_pred ec
Confidence 54
No 216
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=6.2e-19 Score=174.47 Aligned_cols=151 Identities=21% Similarity=0.186 Sum_probs=109.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh-----hhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~-----~~L~v~l~~ 475 (621)
.+|+++||++++|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+ ++|++.|...+. +++....
T Consensus 19 ~il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~l~~~t~~enl~~~~-- 90 (204)
T cd03250 19 FTLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPWIQNGTIRENILFGK-- 90 (204)
T ss_pred ceeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCchhccCcHHHHhccCC--
Confidence 58999999999999 9999999999999999999999999999999988 899999876443 2221110
Q ss_pred cCCCCCHHHHHHHHHHH------Hhhc--C----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 476 KGYEKDPAIVAKEAIQE------ATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~------~~~~--~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
.. .... ..++.+. +... + .+.....+|||++|++.|+++|+ .+|+++|+ |||++++|+
T Consensus 91 -~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~-----~~p~llll-DEP~~~LD~ 160 (204)
T cd03250 91 -PF--DEER-YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY-----SDADIYLL-DDPLSAVDA 160 (204)
T ss_pred -Cc--CHHH-HHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCccccCCH
Confidence 11 1111 1121111 1111 1 23345789999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+...+..++..+... +.++|++|.
T Consensus 161 ~~~~~l~~~ll~~~~~~----~~tvi~~sh 186 (204)
T cd03250 161 HVGRHIFENCILGLLLN----NKTRILVTH 186 (204)
T ss_pred HHHHHHHHHHHHHhccC----CCEEEEEeC
Confidence 87643333344444322 567777765
No 217
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.5e-19 Score=198.00 Aligned_cols=182 Identities=14% Similarity=0.121 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHA--- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~--- 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+.
T Consensus 11 ~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHS--IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 458999999999999 99999999999999999999999999999999987641 489999875332
Q ss_pred ---hhcccceee-cCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 ---RRLQVPIFE-KGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ---~~L~v~l~~-~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
+++....+. .....+. ...+.++++.+.... .+..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~-----~~p~lllL-DEPt 162 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS-----YNAKIVIM-DEPT 162 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCC
Confidence 222221110 0100111 123344555444432 25667889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.+.|..++.. +.++|++|. | .-. +....-.|.++..|+-+
T Consensus 163 ~~LD~~~~~-~l~~~l~~l~~~----g~tvii~tH-~-----~~~----~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 163 SSLTEKEVN-HLFTIIRKLKER----GCGIVYISH-K-----MEE----IFQLCDEITILRDGQWI 213 (491)
T ss_pred CCCCHHHHH-HHHHHHHHHHhC----CCEEEEEec-C-----HHH----HHHhCCEEEEEECCEEE
Confidence 999999864 555677777542 566777774 2 111 22233467777777655
No 218
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.80 E-value=3.5e-19 Score=179.09 Aligned_cols=162 Identities=16% Similarity=0.145 Sum_probs=116.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh---hcCcEEEEccccc------ceeeeeehhhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDT------FRSGAVEQLRTHAR--- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~---~~~GkV~I~~~Dt------~RigaveQl~~~~~--- 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |++|+|.+.+.+. .+++++.|...+..
T Consensus 20 ~~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 20 ARILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred cccccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 568999999999999 999999999999999999999998 8999999998765 24888888653332
Q ss_pred ---hcccceeecCCC-CCHH---HHHHH-HHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 ---RLQVPIFEKGYE-KDPA---IVAKE-AIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ---~L~v~l~~~~~~-~d~~---~ia~~-al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
++.......... .... ..+.+ .++.+....+ +..+..+|||++|++.++++|+ .+|+++|+ ||||
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~illl-DEP~ 171 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL-----WDPKVLIL-DEPT 171 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH-----hCCCEEEE-eCCC
Confidence 222111001101 0111 11122 3333333222 4567789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
+|+|+..+ ..|.+.+..+.+. +.+.+++|.-
T Consensus 172 ~gLD~~~~-~~~~~~l~~~~~~----~~tiii~sh~ 202 (226)
T cd03234 172 SGLDSFTA-LNLVSTLSQLARR----NRIVILTIHQ 202 (226)
T ss_pred cCCCHHHH-HHHHHHHHHHHHC----CCEEEEEecC
Confidence 99999886 4566777777542 4566776653
No 219
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.8e-19 Score=180.14 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=128.5
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhccc---
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQV--- 471 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~v--- 471 (621)
+|++++|++.+|+ +++|+||||+||||+++.|+|++.|+.|+|.+.+.++. ++++++|...+...+.+
T Consensus 14 ~l~~is~~i~~Ge--~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGD--YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 6999999999999 99999999999999999999999999999999987763 48888887543322211
Q ss_pred -ceeecCCCCC---HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 472 -PIFEKGYEKD---PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 472 -~l~~~~~~~d---~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
.+........ ....+.++++.+.+.. .+..+.++|||++|++.|+++|. .+|+++++ ||||+|+|+..+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-DEPt~gLD~~~~ 165 (235)
T cd03299 92 IAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALV-----VNPKILLL-DEPFSALDVRTK 165 (235)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-CCCcccCCHHHH
Confidence 1100011111 1122334444443332 25667789999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
. .+.+.++.+... .+.+.+++|.- ... +....--|+.+..|+-+
T Consensus 166 ~-~l~~~l~~~~~~---~~~tili~tH~------~~~----~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 166 E-KLREELKKIRKE---FGVTVLHVTHD------FEE----AWALADKVAIMLNGKLI 209 (235)
T ss_pred H-HHHHHHHHHHHh---cCCEEEEEecC------HHH----HHHhCCEEEEEECCEEE
Confidence 4 555777776542 25677777751 111 22223367777777765
No 220
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2.3e-19 Score=184.10 Aligned_cols=160 Identities=21% Similarity=0.260 Sum_probs=115.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++.| ++|+|.+.+.++. .+|+++|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (258)
T PRK14241 17 FHAVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP 94 (258)
T ss_pred EeeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence 358999999999999 9999999999999999999999874 6999999886641 388888864
Q ss_pred hhh------hhcccceeecCC-CCC-HHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THA------RRLQVPIFEKGY-EKD-PAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~------~~L~v~l~~~~~-~~d-~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+. +++...+..... ... ....+.++++.+.. ...+..+.++|||++|++.|+++|. .+|++
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~l 169 (258)
T PRK14241 95 NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA-----VEPDV 169 (258)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 332 222211110010 111 11233444444432 1235667889999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|| ||||+|||+..+. .+.+.|..++. +.++|++|.
T Consensus 170 lll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tviivsH 205 (258)
T PRK14241 170 LLM-DEPCSALDPISTL-AIEDLINELKQ-----DYTIVIVTH 205 (258)
T ss_pred EEE-cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 999 9999999998864 55577777743 246677664
No 221
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.9e-19 Score=206.59 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=131.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~ 465 (621)
..+|++|||++.+|+ +++|+|+||||||||++.|+|++.|+.|+|.+.+.++. ++|+++|... +
T Consensus 337 ~~~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l 414 (623)
T PRK10261 337 VHAVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL 414 (623)
T ss_pred eEEEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc
Confidence 458999999999999 99999999999999999999999999999999987541 3899999752 2
Q ss_pred hhhc------ccceeecCC-CC-CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 466 ARRL------QVPIFEKGY-EK-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 466 ~~~L------~v~l~~~~~-~~-d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
...+ ..++...+. .. .....+.++++.+++. ..+..+..+||||+|++.||++|+ .+|+++|+ |
T Consensus 415 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~-----~~p~llll-D 488 (623)
T PRK10261 415 DPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA-----LNPKVIIA-D 488 (623)
T ss_pred CCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 2222 111111111 11 1123344555555542 235677899999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+|||+..+. .+.+.|.++.+. .+.++|++|. ....+. ...-.|+++-.|+-+
T Consensus 489 EPts~LD~~~~~-~i~~ll~~l~~~---~g~tvi~isH------dl~~v~----~~~dri~vl~~G~iv 543 (623)
T PRK10261 489 EAVSALDVSIRG-QIINLLLDLQRD---FGIAYLFISH------DMAVVE----RISHRVAVMYLGQIV 543 (623)
T ss_pred CCcccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEeC------CHHHHH----HhCCEEEEEECCEEE
Confidence 999999999885 444777777543 3677888875 222222 333467777777654
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.4e-19 Score=182.87 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=114.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. +++|+|.+.+.++. ++|++.|..
T Consensus 23 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 100 (264)
T PRK14243 23 FLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP 100 (264)
T ss_pred EEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence 358999999999999 999999999999999999999886 37899999886541 388888864
Q ss_pred h-----hhhhcccceeecCCCCCHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 T-----HARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~-----~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
. ..+++........+.......+.++++.+... ..+..+.++|||++|++.|+++|+ .+|+++||
T Consensus 101 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL 175 (264)
T PRK14243 101 NPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA-----VQPEVILM 175 (264)
T ss_pred ccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3 22333222111111111122233333333221 135567789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|||+..+. .+.+.|..+.. ..++|++|.
T Consensus 176 -DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tvi~vtH 208 (264)
T PRK14243 176 -DEPCSALDPISTL-RIEELMHELKE-----QYTIIIVTH 208 (264)
T ss_pred -eCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEec
Confidence 9999999999874 56677777753 246666664
No 223
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=7.4e-19 Score=165.63 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=146.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------------ceeeeeehhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------------FRSGAVEQLRT 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------------~RigaveQl~~ 464 (621)
..+|.||+++.++|+ .++++||+|+|||||++.|.-+..|.+|...|.+... ..+|.|+|...
T Consensus 15 ~q~lfdi~l~~~~ge--tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~ 92 (242)
T COG4161 15 HQALFDITLDCPEGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92 (242)
T ss_pred chheeeeeecCCCCC--EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence 457889999999999 9999999999999999999999999999999887532 12788887654
Q ss_pred hhhhc-------ccceeecCCCCCH-HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 465 HARRL-------QVPIFEKGYEKDP-AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 465 ~~~~L-------~v~l~~~~~~~d~-~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
+...+ ..|....+..++. ...+.+.+..+.+.++ |..+..+|||+|||++|+|+|. ++|+++|| |
T Consensus 93 lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralm-----mkpqvllf-d 166 (242)
T COG4161 93 LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALM-----MEPQVLLF-D 166 (242)
T ss_pred cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHh-----cCCcEEee-c
Confidence 33332 2233333333332 2345555666666555 7888999999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--c---ccCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D---LKKL 610 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--D---L~~~ 610 (621)
|||++||+.-..+.. .+++.++. .+|+-+|+|. .++ ++..+...|+|+-+|..|. | +...
T Consensus 167 eptaaldpeitaqvv-~iikel~~----tgitqvivth------ev~----va~k~as~vvyme~g~ive~g~a~~ft~p 231 (242)
T COG4161 167 EPTAALDPEITAQIV-SIIKELAE----TGITQVIVTH------EVE----VARKTASRVVYMENGHIVEQGDASCFTEP 231 (242)
T ss_pred CcccccCHHHHHHHH-HHHHHHHh----cCceEEEEEe------ehh----HHHhhhhheEeeecCeeEeecchhhccCc
Confidence 999999998765444 67777764 4888899884 233 3556666899999999885 3 5555
Q ss_pred CHHHHHHHh
Q 007024 611 NVKSIVKTL 619 (621)
Q Consensus 611 ~~~~~v~~L 619 (621)
..+.|.+.|
T Consensus 232 ~te~f~~yl 240 (242)
T COG4161 232 QTEAFKNYL 240 (242)
T ss_pred cHHHHHHHh
Confidence 666666554
No 224
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.1e-19 Score=185.32 Aligned_cols=185 Identities=17% Similarity=0.165 Sum_probs=137.9
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-h----cCcEEEEcccccc-------------eeeee
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-Q----HKVSVMMAACDTF-------------RSGAV 459 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~----~~GkV~I~~~Dt~-------------Rigav 459 (621)
..+.+++||||++.+|+ +++|||.+|||||||...|.+++. + .+|+|.+.+.|++ +|+++
T Consensus 16 g~v~av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mI 93 (316)
T COG0444 16 GVVKAVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93 (316)
T ss_pred ccEEEEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEE
Confidence 35789999999999999 999999999999999999999997 3 4689999998762 39999
Q ss_pred ehhhhh--------hhhcccceeecCC---CCCHHHHHHHHHHHHhhcCC----CccccccchhHHhHHHHHHHHHhhhh
Q 007024 460 EQLRTH--------ARRLQVPIFEKGY---EKDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIY 524 (621)
Q Consensus 460 eQl~~~--------~~~L~v~l~~~~~---~~d~~~ia~~al~~~~~~~~----d~vliDtSGg~qqr~~LaraL~~l~~ 524 (621)
+|.... ...+.-.+..... ..+....+.++++.++..+. +.....+||||+||+.||.+|+
T Consensus 94 fQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala---- 169 (316)
T COG0444 94 FQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA---- 169 (316)
T ss_pred EcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh----
Confidence 997522 1111111111111 11123445555655555443 5678899999999999999999
Q ss_pred cCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 525 ~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+|+++|. ||||++||...|.+.+ +.|+++.+ ..+.+.+++| +..|.+..++. .|..+=.|+-|
T Consensus 170 -~~P~LlIA-DEPTTALDvt~QaqIl-~Ll~~l~~---e~~~aiilIT------HDl~vva~~aD----ri~VMYaG~iV 233 (316)
T COG0444 170 -LNPKLLIA-DEPTTALDVTVQAQIL-DLLKELQR---EKGTALILIT------HDLGVVAEIAD----RVAVMYAGRIV 233 (316)
T ss_pred -CCCCEEEe-CCCcchhhHHHHHHHH-HHHHHHHH---hcCCEEEEEe------CCHHHHHHhcc----eEEEEECcEEE
Confidence 99999999 9999999999998666 67777765 3588899988 45677766665 55555566655
No 225
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=5.2e-19 Score=180.73 Aligned_cols=181 Identities=16% Similarity=0.196 Sum_probs=124.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh--h---cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~---~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. | ++|+|.+.+.++. ++++++|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14256 17 NHAVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94 (252)
T ss_pred eeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence 358999999999999 999999999999999999999986 3 5899999986642 288888875
Q ss_pred hhhh------hcccceeecC-CCC-CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THAR------RLQVPIFEKG-YEK-DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~~------~L~v~l~~~~-~~~-d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+.. ++...+.... ... +....+.++++.+... ..+..+.++|||++|++.|+++|. .+|++
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~-----~~p~l 169 (252)
T PRK14256 95 NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA-----VKPEV 169 (252)
T ss_pred CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh-----cCCCE
Confidence 3322 2221111111 111 1122334444443321 123457789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|+|+..+ ..+.+.|..+.. ..++|++|.-- .. +....-.+.++..|+-+
T Consensus 170 lll-DEP~~gLD~~~~-~~l~~~l~~~~~-----~~tiiivsH~~------~~----~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14256 170 ILM-DEPASALDPIST-LKIEELIEELKE-----KYTIIIVTHNM------QQ----AARVSDYTAFFYMGDLV 226 (252)
T ss_pred EEE-cCCcccCCHHHH-HHHHHHHHHHHh-----CCcEEEEECCH------HH----HHhhCCEEEEEECCEEE
Confidence 999 999999999886 455577777753 24567766421 11 22333467777777654
No 226
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.2e-19 Score=181.58 Aligned_cols=181 Identities=16% Similarity=0.192 Sum_probs=125.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++. ++|++.|..
T Consensus 20 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (254)
T PRK14273 20 FKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP 97 (254)
T ss_pred ceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence 358999999999999 9999999999999999999999986 4899999886531 388888865
Q ss_pred hhh-----hhcccceeecCC-CC-CHHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGY-EK-DPAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~-~~-d~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
... +++......... .. .....+.++++.+.. ...+..+.++|||++|++.|+++|. .+|+++
T Consensus 98 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~-----~~p~ll 172 (254)
T PRK14273 98 NPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA-----IEPNVI 172 (254)
T ss_pred ccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 332 222111100010 10 112233344443322 1235667889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+. .+.+.|..+.. +.++|++|. ....+ ....-.|+++..|+-+
T Consensus 173 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tvii~sH------~~~~~----~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 173 LM-DEPTSALDPISTG-KIEELIINLKE-----SYTIIIVTH------NMQQA----GRISDRTAFFLNGCIE 228 (254)
T ss_pred EE-eCCCcccCHHHHH-HHHHHHHHHhc-----CCEEEEEeC------CHHHH----HHhCCEEEEEECCEEE
Confidence 99 9999999999874 55577777742 356666664 12222 2333467788888765
No 227
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=5.1e-19 Score=171.81 Aligned_cols=136 Identities=27% Similarity=0.297 Sum_probs=101.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce-----------eeeeehhhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----------SGAVEQLRTHARR 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R-----------igaveQl~~~~~~ 468 (621)
..++++++|++.+|+ +++|+||||+|||||++.|+|+++++.|+|.+.+.+... ++++.|...+...
T Consensus 13 ~~~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGE--IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 358999999999999 999999999999999999999999999999998876422 3333332111000
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 469 L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
+ . ..+.+. .-+|||++|++.|+++|. .+|+++|| |||++|+|+..+.
T Consensus 91 ~-----------t----~~~~l~-----------~~lS~G~~qr~~la~al~-----~~p~llil-DEP~~~LD~~~~~- 137 (178)
T cd03229 91 L-----------T----VLENIA-----------LGLSGGQQQRVALARALA-----MDPDVLLL-DEPTSALDPITRR- 137 (178)
T ss_pred C-----------C----HHHhee-----------ecCCHHHHHHHHHHHHHH-----CCCCEEEE-eCCcccCCHHHHH-
Confidence 0 0 011000 008999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+.+..+.+. .+.+.+++|.
T Consensus 138 ~l~~~l~~~~~~---~~~tiii~sH 159 (178)
T cd03229 138 EVRALLKSLQAQ---LGITVVLVTH 159 (178)
T ss_pred HHHHHHHHHHHh---cCCEEEEEeC
Confidence 555777777643 1356666664
No 228
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=3e-19 Score=186.36 Aligned_cols=160 Identities=22% Similarity=0.273 Sum_probs=115.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |++|+|.+.+.++. ++++++|..
T Consensus 52 ~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 52 EQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 358999999999999 999999999999999999999986 58999999886641 378888875
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+ .+++.......+...+....+.++++.+... ..+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~-----~~p~lLLL 204 (285)
T PRK14254 130 NPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA-----PDPEVILM 204 (285)
T ss_pred ccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 32 2222211110111111122334444444321 124567789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|||+..+ ..+.+.|..+.+ ..++|++|.
T Consensus 205 -DEPts~LD~~~~-~~l~~~L~~~~~-----~~tiii~tH 237 (285)
T PRK14254 205 -DEPASALDPVAT-SKIEDLIEELAE-----EYTVVIVTH 237 (285)
T ss_pred -eCCCCCCCHHHH-HHHHHHHHHHhc-----CCEEEEEeC
Confidence 999999999886 456677777754 235666664
No 229
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.80 E-value=3.5e-19 Score=200.23 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=135.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc-ccc---c------------ceeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACD---T------------FRSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~-~~D---t------------~RigaveQl~ 463 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+. +.+ + .++|++.|..
T Consensus 297 ~~il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 374 (520)
T TIGR03269 297 VKAVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374 (520)
T ss_pred ceEEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence 358999999999999 999999999999999999999999999999995 421 1 1389999865
Q ss_pred hhhhhc------ccceeecCCCCC-HHHHHHHHHHHHhhcC------CCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THARRL------QVPIFEKGYEKD-PAIVAKEAIQEATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~~~L------~v~l~~~~~~~d-~~~ia~~al~~~~~~~------~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+...+ ...+. ...... ....+.++++.+.+.. .+..+..+||||+||+.||++|+ .+|++
T Consensus 375 ~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~l 448 (520)
T TIGR03269 375 DLYPHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI-----KEPRI 448 (520)
T ss_pred ccCCCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh-----cCCCE
Confidence 332222 11110 011111 1123445555555432 35677889999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKL 610 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~ 610 (621)
+|| ||||+|||+..+ +.+.+.|..+... .+.++|++|. ..-. +....-.|+++..|+-+.+ -
T Consensus 449 Lll-DEPt~~LD~~~~-~~l~~~l~~l~~~---~g~tvi~vsH------d~~~----~~~~~d~i~~l~~G~i~~~---g 510 (520)
T TIGR03269 449 VIL-DEPTGTMDPITK-VDVTHSILKAREE---MEQTFIIVSH------DMDF----VLDVCDRAALMRDGKIVKI---G 510 (520)
T ss_pred EEE-eCCcccCCHHHH-HHHHHHHHHHHHH---cCcEEEEEeC------CHHH----HHHhCCEEEEEECCEEEEE---C
Confidence 999 999999999986 4555777776542 2567788775 2222 2233457888888886532 2
Q ss_pred CHHHHHHHh
Q 007024 611 NVKSIVKTL 619 (621)
Q Consensus 611 ~~~~~v~~L 619 (621)
.++.+...|
T Consensus 511 ~~~~~~~~~ 519 (520)
T TIGR03269 511 DPEEIVEEL 519 (520)
T ss_pred CHHHHHhhc
Confidence 455555443
No 230
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.80 E-value=6.1e-19 Score=182.93 Aligned_cols=188 Identities=17% Similarity=0.142 Sum_probs=127.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc--------CcEEEEcccccc---------eeeeeehh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--------KVSVMMAACDTF---------RSGAVEQL 462 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~--------~GkV~I~~~Dt~---------RigaveQl 462 (621)
..+|+++||.+.+|+ +++|+||||||||||++.|+|++.|. .|+|.+.+.+.. ++++++|.
T Consensus 14 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 14 RAILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred EeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 358999999999999 99999999999999999999999987 899999987642 26888886
Q ss_pred hh------hhhhcccceeecC-----CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhh----hhcC
Q 007024 463 RT------HARRLQVPIFEKG-----YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKL----IYLN 526 (621)
Q Consensus 463 ~~------~~~~L~v~l~~~~-----~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l----~~~~ 526 (621)
.. ..+++....+... +.......+.++++.+.... .+..+.++|||++|++.|+++|+.. -+..
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 42 2222222111100 01111233445555544432 2566788999999999999999910 0012
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+++|| ||||+|||+..+. .+.+.+..+... .+.++|++|.- ... +....-.++++..|+-+
T Consensus 172 ~p~lllL-DEPt~~LD~~~~~-~l~~~l~~~~~~---~~~tviiisH~------~~~----~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 172 PPRYLLL-DEPTAALDLAHQH-RLLDTVRRLARD---WNLGVLAIVHD------PNL----AARHADRIAMLADGAIV 234 (272)
T ss_pred CCCEEEE-cCccccCCHHHHH-HHHHHHHHHHHh---cCCEEEEEECC------HHH----HHHhCCEEEEEECCeEE
Confidence 8999998 9999999999874 555777776543 14566776641 112 22233467777777754
No 231
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=4e-19 Score=179.82 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=122.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR--- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~--- 467 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|+++|.+|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTI 93 (238)
T ss_pred ccceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhH
Confidence 358999999999999 99999999999999999999999999999999986642 3888888754332
Q ss_pred --hcccceeecCCCCCHHHHHHHHHH------HHhhc--C----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 468 --RLQVPIFEKGYEKDPAIVAKEAIQ------EATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 468 --~L~v~l~~~~~~~d~~~ia~~al~------~~~~~--~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
++.... ... .... ..+.++ ..... + .+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 94 ~e~l~~~~--~~~--~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~llll 163 (238)
T cd03249 94 AENIRYGK--PDA--TDEE-VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL-----RNPKILLL 163 (238)
T ss_pred HHHhhccC--CCC--CHHH-HHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 221111 011 1111 111111 11100 1 23446789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..|.+.|..+. .+.+++++|. |. -. +. ..-.|+.+..|+-+
T Consensus 164 -DEP~~gLD~~~~-~~l~~~l~~~~-----~g~~vi~~sh-~~-----~~----~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 164 -DEATSALDAESE-KLVQEALDRAM-----KGRTTIVIAH-RL-----ST----IR-NADLIAVLQNGQVV 216 (238)
T ss_pred -eCccccCCHHHH-HHHHHHHHHhc-----CCCEEEEEeC-CH-----HH----Hh-hCCEEEEEECCEEE
Confidence 999999999987 45667776663 2556677664 21 11 12 23467888888764
No 232
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.5e-19 Score=179.97 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+|+||||||||+++|+|++.+ +.|+|.+.+.++. ++|+++|..
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 102 (258)
T PRK14268 25 KQALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP 102 (258)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence 358999999999999 9999999999999999999999875 7999999886531 278888865
Q ss_pred hhh-----hhcccceeecCCCCCH---HHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THA-----RRLQVPIFEKGYEKDP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
... +++.+... .++... ...+.++++.++.. ..+..+..+|||++|++.|+++|+ .+|++
T Consensus 103 ~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~-----~~p~l 175 (258)
T PRK14268 103 NPFPMSIYDNVAYGPR--IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA-----VKPKI 175 (258)
T ss_pred ccCcccHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH-----cCCCE
Confidence 322 22221111 111111 12234455544331 135567789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|+|+..+. .+.+.|..+.+ +.++|++|.- ... +....-.|+.+..|+-+
T Consensus 176 lll-DEPt~~LD~~~~~-~l~~~l~~l~~-----~~tiiivsH~------~~~----~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 176 ILF-DEPTSALDPISTA-RIEDLIMNLKK-----DYTIVIVTHN------MQQ----AARISDYTGFFLMGELI 232 (258)
T ss_pred EEE-eCCCcccCHHHHH-HHHHHHHHHhh-----CCEEEEEECC------HHH----HHHhCCEEEEEECCEEE
Confidence 999 9999999999874 55577776642 3566776642 112 22333467777777653
No 233
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.80 E-value=7.7e-19 Score=196.53 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEccccc----------ceeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----------FRSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~Dt----------~RigaveQl~~~~~ 467 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.| +.|+|.+.+.++ .++|+++|...+..
T Consensus 14 ~~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 14 VKALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred eEeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 358999999999999 9999999999999999999999986 799999988764 24899999754332
Q ss_pred hc------ccceeec--C--CCC-CHHHHHHHHHHHHhhcCC--CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 468 RL------QVPIFEK--G--YEK-DPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 468 ~L------~v~l~~~--~--~~~-d~~~ia~~al~~~~~~~~--d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+ ....... . ... .....+.++++.+..... +..+.++||||+|++.||++|+ .+|+++||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~-----~~p~lllL- 165 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN-----KQARLLIL- 165 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-
Confidence 22 2111100 0 110 112234455555554332 3457789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..++.. +.++|++|. | .-. +....-.|+++..|+-+
T Consensus 166 DEPt~~LD~~~~~-~l~~~l~~l~~~----g~tviiitH-d-----~~~----~~~~~d~i~~l~~G~i~ 220 (500)
T TIGR02633 166 DEPSSSLTEKETE-ILLDIIRDLKAH----GVACVYISH-K-----LNE----VKAVCDTICVIRDGQHV 220 (500)
T ss_pred eCCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC-c-----HHH----HHHhCCEEEEEeCCeEe
Confidence 9999999999874 555777777542 567777775 2 112 22333467777777754
No 234
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.80 E-value=3.8e-19 Score=177.87 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=121.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L-- 469 (621)
.+|++++|++.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.++. ++++++|...+...-
T Consensus 18 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~ 95 (221)
T cd03244 18 PVLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIR 95 (221)
T ss_pred ccccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHH
Confidence 58999999999999 99999999999999999999999999999999987641 388888876432210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHHhhc--------CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEATRN--------GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~~~~--------~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
++.++.. .... .+.++++.+... ++ +.....+|||++|++.|+++|+ .+|+++|| ||
T Consensus 96 enl~~~~~---~~~~-~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~-----~~p~llll-DE 165 (221)
T cd03244 96 SNLDPFGE---YSDE-ELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL-----RKSKILVL-DE 165 (221)
T ss_pred HHhCcCCC---CCHH-HHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 1111111 1111 122222222111 11 2356788999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|++|||+..+ ..+.+.|..+.. +.++|++|.-- ..+ .. .--+..+..|+-+
T Consensus 166 P~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh~~------~~~----~~-~d~i~~l~~g~~~ 216 (221)
T cd03244 166 ATASVDPETD-ALIQKTIREAFK-----DCTVLTIAHRL------DTI----ID-SDRILVLDKGRVV 216 (221)
T ss_pred ccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEeCCH------HHH----hh-CCEEEEEECCeEE
Confidence 9999999886 455677776642 34566666421 111 11 2466777777654
No 235
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.6e-19 Score=178.91 Aligned_cols=181 Identities=18% Similarity=0.224 Sum_probs=123.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh---Hhh--cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW---LLQ--HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~---L~~--~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|+ +++ ++|+|.+.+.++. ++++++|..
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 93 (250)
T PRK14245 16 FHALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP 93 (250)
T ss_pred EeEEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence 358999999999999 9999999999999999999997 344 4899999987642 288888865
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHHhhcC-----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~~-----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++...+........ ....+.++++.++... .+..+.++|||++|++.|+++|+ .+|+++
T Consensus 94 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 168 (250)
T PRK14245 94 NPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA-----VSPSVL 168 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2222111100111011 1123344455443321 24556789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+. .+.+.|..+.+ +.++|++|. ....+. ...-.|.++..|+-+
T Consensus 169 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiivtH------~~~~~~----~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 169 LM-DEPASALDPISTA-KVEELIHELKK-----DYTIVIVTH------NMQQAA----RVSDKTAFFYMGEMV 224 (250)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC------CHHHHH----hhCCEEEEEECCEEE
Confidence 99 9999999999874 55677777642 346666664 222222 333367777777764
No 236
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=4e-19 Score=200.22 Aligned_cols=183 Identities=14% Similarity=0.112 Sum_probs=129.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEccccc-------------ceeeeeeh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT-------------FRSGAVEQ 461 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt-------------~RigaveQ 461 (621)
..+|++|||++.+|+ +++|+||||||||||++.|+|+++| +.|+|.+.+.++ .++|+++|
T Consensus 22 ~~~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 22 RTVVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eeeeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 468999999999999 9999999999999999999999986 689999988664 13899999
Q ss_pred hhh--hhhhcc----c--cee-ecCCCC-CHHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 462 LRT--HARRLQ----V--PIF-EKGYEK-DPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 462 l~~--~~~~L~----v--~l~-~~~~~~-d~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
... +...+. + ... ..+... .....+.++++.+++.+ .+..+.++||||+||+.||++|+ .+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~-----~~ 174 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL-----TR 174 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh-----cC
Confidence 742 111111 1 110 001111 11234455566555533 25567899999999999999999 99
Q ss_pred CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 528 PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+++|| ||||++||+..+. .+.+.|.++... .+.++|++|.- ...+. ...-.|+++-.|+.+
T Consensus 175 p~llll-DEPt~~LD~~~~~-~l~~~l~~l~~~---~g~tvi~vtHd------~~~~~----~~~dri~~l~~G~i~ 236 (529)
T PRK15134 175 PELLIA-DEPTTALDVSVQA-QILQLLRELQQE---LNMGLLFITHN------LSIVR----KLADRVAVMQNGRCV 236 (529)
T ss_pred CCEEEE-cCCCCccCHHHHH-HHHHHHHHHHHh---cCCeEEEEcCc------HHHHH----HhcCEEEEEECCEEE
Confidence 999999 9999999999874 555777777543 25677777752 22222 233467777777643
No 237
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=5.3e-19 Score=182.47 Aligned_cols=181 Identities=17% Similarity=0.197 Sum_probs=123.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 34 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 111 (268)
T PRK14248 34 KRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111 (268)
T ss_pred ceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence 458999999999999 999999999999999999999864 68999999886641 388988875
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++...+........ ....+.+++..+... ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 112 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~-----~~p~ll 186 (268)
T PRK14248 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA-----MKPAVL 186 (268)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh-----CCCCEE
Confidence 322 222211100000000 112233333333221 124566789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+.. +.++|++|.-- -. +....-.|+++-.|.-+
T Consensus 187 lL-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiii~tH~~------~~----~~~~~d~v~~l~~G~i~ 242 (268)
T PRK14248 187 LL-DEPASALDPISN-AKIEELITELKE-----EYSIIIVTHNM------QQ----ALRVSDRTAFFLNGDLV 242 (268)
T ss_pred EE-cCCCcccCHHHH-HHHHHHHHHHhc-----CCEEEEEEeCH------HH----HHHhCCEEEEEECCEEE
Confidence 99 999999999986 456677777743 24566666421 11 22333467777777654
No 238
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=1.1e-18 Score=177.07 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=128.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|+++||++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. +++++.|...+...+.
T Consensus 13 ~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGS--LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 358999999999999 99999999999999999999999999999999887652 3788888764433221
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++.+. ...+.++++.+.... .+..+..+|||++|++.|+++|+ .+|+++|+ |||++|+|+.
T Consensus 91 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~-----~~p~llll-DEP~~~LD~~ 164 (237)
T TIGR00968 91 DNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALA-----VEPQVLLL-DEPFGALDAK 164 (237)
T ss_pred HHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCcccCCHH
Confidence 111111111111 122344444443322 25667789999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+ ..|.+.+..+... .+.+++++|.-.. . +....--|+.+..|+.+
T Consensus 165 ~~-~~~~~~l~~~~~~---~~~tvli~sH~~~------~----~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 165 VR-KELRSWLRKLHDE---VHVTTVFVTHDQE------E----AMEVADRIVVMSNGKIE 210 (237)
T ss_pred HH-HHHHHHHHHHHHh---cCCEEEEEeCCHH------H----HHhhcCEEEEEECCEEE
Confidence 86 4555777766542 2466777764221 1 22223366677777654
No 239
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.5e-18 Score=176.90 Aligned_cols=181 Identities=21% Similarity=0.191 Sum_probs=126.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh---hcCcEEEEcccccc---------eeeeeehhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDTF---------RSGAVEQLRTH-- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~---~~~GkV~I~~~Dt~---------RigaveQl~~~-- 465 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. |..|+|.+.+.++. ++|+++|...+
T Consensus 15 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~ 92 (246)
T PRK14269 15 KQALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92 (246)
T ss_pred EeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc
Confidence 358999999999999 999999999999999999999874 68999999987752 38899887533
Q ss_pred ---hhhcccceeecCC--CCC-HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ---ARRLQVPIFEKGY--EKD-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ---~~~L~v~l~~~~~--~~d-~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+++......... ... ....+.++++.+... ..+.....+|||++|++.|+++|+ .+|+++||
T Consensus 93 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lllL- 166 (246)
T PRK14269 93 KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA-----IKPKLLLL- 166 (246)
T ss_pred ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 2222111100011 001 112233444444331 124556789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|+|+..+ ..|.+.|..+.. +.+++++|.- ... +....-.|+++..|+-+
T Consensus 167 DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~tH~------~~~----~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 167 DEPTSALDPISS-GVIEELLKELSH-----NLSMIMVTHN------MQQ----GKRVADYTAFFHLGELI 220 (246)
T ss_pred cCCcccCCHHHH-HHHHHHHHHHhC-----CCEEEEEecC------HHH----HHhhCcEEEEEECCEEE
Confidence 999999999876 455677776642 4567776642 212 22333477888888765
No 240
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.7e-19 Score=197.18 Aligned_cols=182 Identities=14% Similarity=0.113 Sum_probs=130.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~-- 467 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.++. ++|+++|...+..
T Consensus 17 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 17 VKALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 358999999999999 99999999999999999999999999999999887642 3899998753322
Q ss_pred ----hcccceeecCCC-CCH---HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 468 ----RLQVPIFEKGYE-KDP---AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 468 ----~L~v~l~~~~~~-~d~---~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
++.........+ .+. ...+.++++.+.... .+..+.++||||+|++.||++|+ .+|+++|| ||||
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt 168 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA-----RNARVIAF-DEPT 168 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH-----hCCCEEEE-cCCC
Confidence 222211100111 111 223445555555433 35677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.+.|..+.+. +.++|++|.- ... +....-.|+++..|+-+
T Consensus 169 ~~LD~~~~~-~l~~~l~~~~~~----g~tiiiitHd------~~~----~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 169 SSLSAREIE-QLFRVIRELRAE----GRVILYVSHR------MEE----IFALCDAITVFKDGRYV 219 (501)
T ss_pred CCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 999999874 555777776542 5677777752 112 22333467777777654
No 241
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.2e-19 Score=179.06 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=121.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|++|+|.+.+.++. ++++++|...+ .
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 93 (234)
T cd03251 16 PVLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVA 93 (234)
T ss_pred cceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHH
Confidence 58999999999999 99999999999999999999999999999999886542 37888886533 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHH------HHHhhc--C----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAI------QEATRN--G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al------~~~~~~--~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+++.. ....+ .... ....+ +.+... + .+..+.++|||++|++.|+++|+ .+|+++||
T Consensus 94 enl~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~-----~~p~lllL- 162 (234)
T cd03251 94 ENIAY--GRPGA--TREE-VEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALL-----KDPPILIL- 162 (234)
T ss_pred HHhhc--cCCCC--CHHH-HHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 22211 11111 1111 11111 111110 1 23456789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+|||+..+ ..|.+.|..+.+ +.++|++|. |. -. +.. .-.|+++.+|+-+.
T Consensus 163 DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh-~~-----~~----~~~-~d~v~~l~~G~i~~ 216 (234)
T cd03251 163 DEATSALDTESE-RLVQAALERLMK-----NRTTFVIAH-RL-----ST----IEN-ADRIVVLEDGKIVE 216 (234)
T ss_pred eCccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEec-CH-----HH----Hhh-CCEEEEecCCeEee
Confidence 999999999986 455577766642 456666664 11 11 112 44778888887653
No 242
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=3.3e-19 Score=169.01 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=129.7
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ce--eeeeehhh-----
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLR----- 463 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~R--igaveQl~----- 463 (621)
....+|+++||.+..|+ .++|+||+||||||+++.+|-+..|+.|.+++-|.|. || ++|+-|-.
T Consensus 14 ~~a~il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 45678999999999999 9999999999999999999999999999999999886 33 66776655
Q ss_pred hhhhhcccceeecCCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 464 THARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 464 ~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
+..++|-.|...+....|+.. +.+.++.+.+.. .+..+-++|||++|+.+|+|.|. ..|+++|| ||+|++|
T Consensus 92 tVeDNlifP~~~r~rr~dr~a-a~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq-----~~P~ILLL-DE~TsAL 164 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAA-ALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ-----FMPKILLL-DEITSAL 164 (223)
T ss_pred chhhccccchHHhccCCChHH-HHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh-----cCCceEEe-cCchhhc
Confidence 456677777766655565543 334444444433 25677899999999999999999 99999998 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
|+.+. +.++..+..+.. ...+..+.+|.=
T Consensus 165 D~~nk-r~ie~mi~~~v~---~q~vAv~WiTHd 193 (223)
T COG4619 165 DESNK-RNIEEMIHRYVR---EQNVAVLWITHD 193 (223)
T ss_pred ChhhH-HHHHHHHHHHhh---hhceEEEEEecC
Confidence 99875 567777766653 336677888863
No 243
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.5e-19 Score=169.53 Aligned_cols=129 Identities=21% Similarity=0.252 Sum_probs=99.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---------eeeeehhhhhhhhccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRLQV 471 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---------igaveQl~~~~~~L~v 471 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|.+|+|.+.+.++.+ +++++|...+.
T Consensus 16 ~~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~----- 88 (171)
T cd03228 16 PVLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF----- 88 (171)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhc-----
Confidence 58999999999999 999999999999999999999999999999999876521 34443332110
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
...+ .+ . + +|||++|++.|+++|+ .+|+++|| ||||+|+|+..+ ..+.
T Consensus 89 ----------~~t~-~e---~--------l---LS~G~~~rl~la~al~-----~~p~llll-DEP~~gLD~~~~-~~l~ 136 (171)
T cd03228 89 ----------SGTI-RE---N--------I---LSGGQRQRIAIARALL-----RDPPILIL-DEATSALDPETE-ALIL 136 (171)
T ss_pred ----------cchH-HH---H--------h---hCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCcCCCHHHH-HHHH
Confidence 0001 00 0 0 9999999999999999 99999999 999999999886 4555
Q ss_pred HHHHHhhcCCCCCCceEEEecc
Q 007024 552 QKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+..+.. +.+.+++|.
T Consensus 137 ~~l~~~~~-----~~tii~~sh 153 (171)
T cd03228 137 EALRALAK-----GKTVIVIAH 153 (171)
T ss_pred HHHHHhcC-----CCEEEEEec
Confidence 66766632 355666664
No 244
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.9e-19 Score=196.07 Aligned_cols=192 Identities=14% Similarity=0.128 Sum_probs=135.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhh---hh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTH---AR 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~---~~ 467 (621)
.+|++++|.+.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. .+|+++|.+.. ..
T Consensus 262 ~~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 262 PSIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred cccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 48999999999999 99999999999999999999999999999999987752 17888887531 11
Q ss_pred hcc---------cceeecCCC---C-CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 468 RLQ---------VPIFEKGYE---K-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 468 ~L~---------v~l~~~~~~---~-d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+. +..+...++ . .....+.++++.+... ..+..+.++||||+|++.||++|+ .+|+++|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~ill 414 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL-----TQPEILM 414 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh-----cCCCEEE
Confidence 111 101100011 1 1122344555555442 247788899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC--cccCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--DLKKL 610 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--DL~~~ 610 (621)
| ||||+|+|+..+. .+.+.+..+... +.++|++|.-- .. +....-.++++..|+-+. +-+.+
T Consensus 415 L-DEPt~gLD~~~~~-~~~~~l~~l~~~----~~tvi~vsHd~------~~----~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 415 L-DEPTRGIDVGAKF-EIYQLIAELAKK----DKGIIIISSEM------PE----LLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred E-cCCCcccChhHHH-HHHHHHHHHHHC----CCEEEEECCCh------HH----HHhhCCEEEEEECCEEEEEEccccC
Confidence 9 9999999999874 455677776542 56788877621 12 223344777777777662 22455
Q ss_pred CHHHH
Q 007024 611 NVKSI 615 (621)
Q Consensus 611 ~~~~~ 615 (621)
+++.+
T Consensus 479 ~~~~~ 483 (491)
T PRK10982 479 TQNEI 483 (491)
T ss_pred CHHHH
Confidence 55544
No 245
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.79 E-value=7.9e-19 Score=174.09 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=112.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL-- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L-- 469 (621)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++ .+++++.|...+...-
T Consensus 22 ~~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~ 99 (207)
T cd03369 22 PVLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIR 99 (207)
T ss_pred ccccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHH
Confidence 58999999999999 9999999999999999999999999999999998764 1388998876332210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
++.++. . .... .+.++++ .+..+..+|||++|++.|+++|. .+|+++|| ||||+|+|+..+ .
T Consensus 100 ~~l~~~~-~--~~~~-~~~~~l~------~~~~~~~LS~G~~qrv~laral~-----~~p~llll-DEP~~~LD~~~~-~ 162 (207)
T cd03369 100 SNLDPFD-E--YSDE-EIYGALR------VSEGGLNLSQGQRQLLCLARALL-----KRPRVLVL-DEATASIDYATD-A 162 (207)
T ss_pred HHhcccC-C--CCHH-HHHHHhh------ccCCCCcCCHHHHHHHHHHHHHh-----hCCCEEEE-eCCcccCCHHHH-H
Confidence 111111 1 1111 1222222 34567789999999999999999 99999999 999999999886 4
Q ss_pred HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+.|..+.. +.+.|++|.
T Consensus 163 ~l~~~l~~~~~-----~~tiii~th 182 (207)
T cd03369 163 LIQKTIREEFT-----NSTILTIAH 182 (207)
T ss_pred HHHHHHHHhcC-----CCEEEEEeC
Confidence 55566666531 566777764
No 246
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8e-19 Score=179.07 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=124.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|+++||.+.+|+ +++|+||||+|||||+++|+|++.|+ .|+|.+.+.++. ++|+++|..
T Consensus 17 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (252)
T PRK14272 17 KQAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP 94 (252)
T ss_pred EEeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence 358999999999999 99999999999999999999998764 799999886641 488888875
Q ss_pred hhhh------hcccceeecCCCCCH--HHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THAR------RLQVPIFEKGYEKDP--AIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~~------~L~v~l~~~~~~~d~--~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+.. ++............. ...+.+.+..+.. ...+..+..+|||++|++.|+++|. .+|++
T Consensus 95 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~l 169 (252)
T PRK14272 95 NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALA-----VEPEI 169 (252)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCE
Confidence 3332 221111101100111 1222222222211 1235667889999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| |||++|+|+..+ ..+.+.|+.+.. +.+++++|.- ... +....-.|+++..|+-+
T Consensus 170 lll-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiii~sH~------~~~----~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14272 170 LLM-DEPTSALDPAST-ARIEDLMTDLKK-----VTTIIIVTHN------MHQ----AARVSDTTSFFLVGDLV 226 (252)
T ss_pred EEE-eCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 999 999999999876 456577777642 3566776642 222 23334478888888764
No 247
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=6.5e-19 Score=182.70 Aligned_cols=160 Identities=19% Similarity=0.242 Sum_probs=112.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|.+.+|+ +++|+||||+|||||+++|+|++.+ ..|+|.+.+.++. ++++++|..
T Consensus 33 ~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~ 110 (274)
T PRK14265 33 FLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP 110 (274)
T ss_pred eEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence 358999999999999 9999999999999999999999863 5899999887642 388888864
Q ss_pred hh-----hhhcccceeecCCCCCHHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKDPAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+ .+++........+.......+.++++.+.. ...+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 111 ~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p~lllL 185 (274)
T PRK14265 111 NPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA-----MKPDVLLM 185 (274)
T ss_pred ccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 32 222221111011111111222333333322 1134566789999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|||+..+. .+.+.|..+.+ +.++|++|.
T Consensus 186 -DEPt~~LD~~~~~-~l~~~L~~~~~-----~~tiii~sH 218 (274)
T PRK14265 186 -DEPCSALDPISTR-QVEELCLELKE-----QYTIIMVTH 218 (274)
T ss_pred -eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 9999999999874 55577777643 245666653
No 248
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.79 E-value=8.4e-19 Score=196.84 Aligned_cols=181 Identities=12% Similarity=0.167 Sum_probs=129.5
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhh-------
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRT------- 464 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~------- 464 (621)
+|++++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+.+.++. ++++++|.+.
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 5899999999999 99999999999999999999999999999999886541 3889988631
Q ss_pred --hhhhcccceee-cCC--CC-CHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 465 --HARRLQVPIFE-KGY--EK-DPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 465 --~~~~L~v~l~~-~~~--~~-d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
..+++....+. ... .. .....+.++++.+... ..+..+..+||||+|++.||++|+ .+|+++|| ||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~-----~~p~lLlL-DE 429 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE-----ASPQLLIV-DE 429 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh-----hCCCEEEE-CC
Confidence 12222111000 001 11 1122344556665553 246778899999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||+|||+..+ +.+.+.|..+... +.++|++|. | ... +....-.|+++..|+-+.
T Consensus 430 Pt~gLD~~~~-~~l~~~l~~l~~~----g~tiIivsH-d-----~~~----i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 430 PTRGVDVSAR-NDIYQLIRSIAAQ----NVAVLFISS-D-----LEE----IEQMADRVLVMHQGEISG 483 (510)
T ss_pred CCcCcChhHH-HHHHHHHHHHHhC----CCEEEEECC-C-----HHH----HHHhCCEEEEEECCEEEE
Confidence 9999999987 4555777777653 566777774 2 222 223334677777777663
No 249
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.3e-18 Score=177.64 Aligned_cols=181 Identities=17% Similarity=0.186 Sum_probs=126.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.|. .|+|.+.+.++. ++++++|..
T Consensus 17 ~~il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 17 HQVLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred eeEecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 358999999999999 99999999999999999999999886 599999886541 388998875
Q ss_pred hh-----hhhcccceeecCCCC--CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~--d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++.......+... .....+.+++..+... ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 169 (251)
T PRK14249 95 NPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA-----IEPEVI 169 (251)
T ss_pred ccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 222221111011110 1112233333333221 135567789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+. .+.+.|..+.. +.+++++|.- ... +....-.|.++..|+.+
T Consensus 170 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tilivsh~------~~~----~~~~~d~i~~l~~G~i~ 225 (251)
T PRK14249 170 LM-DEPCSALDPVSTM-RIEELMQELKQ-----NYTIAIVTHN------MQQ----AARASDWTGFLLTGDLV 225 (251)
T ss_pred EE-eCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeCC------HHH----HHhhCCEEEEEeCCeEE
Confidence 99 9999999998864 55577777632 4567777642 222 22333477888888764
No 250
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=5.3e-19 Score=174.03 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=110.9
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----eeeeeehhhhhhhhc----ccc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----RSGAVEQLRTHARRL----QVP 472 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----RigaveQl~~~~~~L----~v~ 472 (621)
++ +++|++.+|+ +++|+|+||+|||||+++|+|++.|+.|+|.+.+.++. +++++.|...+...+ ++.
T Consensus 16 l~-~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~ 92 (195)
T PRK13541 16 LF-DLSITFLPSA--ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92 (195)
T ss_pred EE-EEEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHHHH
Confidence 44 4999999999 99999999999999999999999999999999998752 367777643221111 111
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
+....+. ....+.++++.+.... .+....++|||++|++.++++|+ .+|+++|| ||||+|+|+..+ ..+.
T Consensus 93 ~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~-----~~p~~lll-DEP~~~LD~~~~-~~l~ 163 (195)
T PRK13541 93 FWSEIYN--SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIA-----CQSDLWLL-DEVETNLSKENR-DLLN 163 (195)
T ss_pred HHHHhcc--cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-HHHH
Confidence 1111111 1122334444443322 35567789999999999999999 99999999 999999999986 4555
Q ss_pred HHHHHhhcCCCCCCceEEEecc
Q 007024 552 QKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+..... .+.+.+++|.
T Consensus 164 ~~l~~~~~----~~~tiii~sh 181 (195)
T PRK13541 164 NLIVMKAN----SGGIVLLSSH 181 (195)
T ss_pred HHHHHHHh----CCCEEEEEeC
Confidence 66654433 2456666664
No 251
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.79 E-value=5e-19 Score=199.45 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=130.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~ 465 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++ .+|+|.+.+.++. ++|+++|... +
T Consensus 299 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 458999999999999 999999999999999999999984 8999999986541 3899999752 2
Q ss_pred ------hhhcccceeecC--CC-CCHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ------ARRLQVPIFEKG--YE-KDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ------~~~L~v~l~~~~--~~-~d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+++..++.... .. .+....+.++++.+... . .+..+.++||||+|++.||++|+ .+|+++||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~llll- 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI-----LKPSLIIL- 449 (529)
T ss_pred CCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh-----CCCCEEEe-
Confidence 222222111000 11 11123345556655543 2 35677899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+++. .+.++|++|. | ...+. ...-.|+++-.|+-+
T Consensus 450 DEPt~~LD~~~~~-~l~~~l~~~~~~---~~~tvi~vsH-d-----~~~~~----~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 450 DEPTSSLDKTVQA-QILALLKSLQQK---HQLAYLFISH-D-----LHVVR----ALCHQVIVLRQGEVV 505 (529)
T ss_pred eCCccccCHHHHH-HHHHHHHHHHHh---hCCEEEEEeC-C-----HHHHH----HhcCeEEEEECCEEE
Confidence 9999999999874 455777777543 2567777775 2 22222 334488888888765
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.79 E-value=8.5e-19 Score=168.68 Aligned_cols=132 Identities=19% Similarity=0.108 Sum_probs=103.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~ 480 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+. .++++++|...+. ..
T Consensus 15 ~~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~-~~----------- 78 (166)
T cd03223 15 VLLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP-LG----------- 78 (166)
T ss_pred eeeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-cc-----------
Confidence 58999999999999 99999999999999999999999999999999764 4688888864321 00
Q ss_pred CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 481 d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
. ..+.+.+. ....+|||++|++.++++|. .+|+++|| ||||+++|+..+. .+.+.+..+
T Consensus 79 ---t-v~~nl~~~-------~~~~LS~G~~~rv~laral~-----~~p~~lll-DEPt~~LD~~~~~-~l~~~l~~~--- 137 (166)
T cd03223 79 ---T-LREQLIYP-------WDDVLSGGEQQRLAFARLLL-----HKPKFVFL-DEATSALDEESED-RLYQLLKEL--- 137 (166)
T ss_pred ---c-HHHHhhcc-------CCCCCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCccccCHHHHH-HHHHHHHHh---
Confidence 0 11111110 35679999999999999999 99999999 9999999998864 444555543
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
+.+.+++|.
T Consensus 138 ----~~tiiivsh 146 (166)
T cd03223 138 ----GITVISVGH 146 (166)
T ss_pred ----CCEEEEEeC
Confidence 356777765
No 253
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.79 E-value=7.1e-19 Score=176.61 Aligned_cols=158 Identities=20% Similarity=0.195 Sum_probs=114.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 27 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSL 104 (226)
T ss_pred CccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhH
Confidence 358999999999999 99999999999999999999999999999999987641 388998875432
Q ss_pred -hhcccceeecCCCCCH-HHH-----HHHHHHHH--hhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 467 -RRLQVPIFEKGYEKDP-AIV-----AKEAIQEA--TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~-~~i-----a~~al~~~--~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
+++..... ...... ... +.+.++.+ +... .+..+..+|||++|++.|+++|. .+|+++|| ||
T Consensus 105 ~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~-----~~p~llll-DE 176 (226)
T cd03248 105 QDNIAYGLQ--SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI-----RNPQVLIL-DE 176 (226)
T ss_pred HHHhccccC--CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 22211111 000000 000 12223333 1222 24556789999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+|||+..+ ..+.+.+..+.. ..+++++|.
T Consensus 177 Pt~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh 207 (226)
T cd03248 177 ATSALDAESE-QQVQQALYDWPE-----RRTVLVIAH 207 (226)
T ss_pred CcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEEC
Confidence 9999999986 466677776643 256677664
No 254
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.2e-18 Score=177.80 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=124.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+|+||||||||++.|+|++. +..|+|.+.+.++. .++++.|..
T Consensus 17 ~~~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14251 17 YEALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94 (251)
T ss_pred eeeeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence 458999999999999 999999999999999999999987 47999999987641 278888764
Q ss_pred hh-----hhhcccceeecCCC-CC-HHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYE-KD-PAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~-~d-~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++.......+.. .+ ....+.++++.+.. ...+..+..+|||++|++.|+++|. .+|+++
T Consensus 95 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~-----~~p~ll 169 (251)
T PRK14251 95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA-----VRPKVV 169 (251)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 22222111000111 11 11223344444333 1135567889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| |||++|||+..+ ..+.+.+..+.. +.++|++|.- ...+. ...-.|+++-.|+-+
T Consensus 170 ll-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tiiiisH~------~~~~~----~~~d~i~~l~~G~i~ 225 (251)
T PRK14251 170 LL-DEPTSALDPISS-SEIEETLMELKH-----QYTFIMVTHN------LQQAG----RISDQTAFLMNGDLI 225 (251)
T ss_pred Ee-cCCCccCCHHHH-HHHHHHHHHHHc-----CCeEEEEECC------HHHHH----hhcCEEEEEECCEEE
Confidence 99 999999999886 456677777642 3567777642 22222 223367777777754
No 255
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.79 E-value=8.8e-19 Score=175.14 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=110.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~ 466 (621)
..++++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++ ..++++.|...+.
T Consensus 14 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 468999999999999 9999999999999999999999999999999987643 1278888875332
Q ss_pred -----hhcccceeecCCCCCHHHHHHHHHHHHhhc--------C----CCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 467 -----RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------G----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 467 -----~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--------~----~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
+++.... .+ ... ...++++.+... + .+..+..+|||++|++.|+++|. .+|+
T Consensus 92 ~~t~~~nl~~~~---~~--~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 160 (218)
T cd03290 92 NATVEENITFGS---PF--NKQ-RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY-----QNTN 160 (218)
T ss_pred cccHHHHHhhcC---cC--CHH-HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh-----hCCC
Confidence 2221111 01 111 112222222110 0 12356789999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHH-HHHHhhcCCCCCCceEEEecc
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQ-KLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~-~L~~l~~~~~~~~it~IIlTK 573 (621)
++|| ||||+|||+..+...++. .+..+.+ .+.+.|++|.
T Consensus 161 illl-DEPt~~LD~~~~~~l~~~~ll~~~~~----~~~tii~~sH 200 (218)
T cd03290 161 IVFL-DDPFSALDIHLSDHLMQEGILKFLQD----DKRTLVLVTH 200 (218)
T ss_pred EEEE-eCCccccCHHHHHHHHHHHHHHHHhc----CCCEEEEEeC
Confidence 9999 999999999886433321 4444433 2567777765
No 256
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.79 E-value=8.9e-19 Score=176.14 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=110.7
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhhhhh--------hhcccceee-
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHA--------RRLQVPIFE- 475 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~~~~--------~~L~v~l~~- 475 (621)
.+.+|+ +++|+|+||||||||+++|+|++.|++|+|.+.+.++ .++++++|...+. +++......
T Consensus 2 ~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 2 SADKGE--LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred ccCCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 456899 9999999999999999999999999999999999875 2489999865331 111111000
Q ss_pred -cCCC-CC--HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 476 -KGYE-KD--PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 476 -~~~~-~d--~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
.... .. ....+.++++.+.... .+..+.++|||++|++.|+++|. .+|+++|+ ||||+|||+..+ ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llil-DEP~~~LD~~~~-~~l 152 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALA-----TRPSVLLL-DEPFTGLDMPTQ-ELL 152 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHH-HHH
Confidence 0010 11 1123445555554433 25667889999999999999999 99999999 999999999987 456
Q ss_pred HHHHHHhhcCCCCCCceEEEecc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+..+... +.+.|++|.
T Consensus 153 ~~~l~~~~~~----~~tvii~sH 171 (223)
T TIGR03771 153 TELFIELAGA----GTAILMTTH 171 (223)
T ss_pred HHHHHHHHHc----CCEEEEEeC
Confidence 6777776532 567777775
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.79 E-value=6e-19 Score=179.45 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=112.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcCcEEEEcccccc----------eeeeeehhhhhhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF----------RSGAVEQLRTHARR 468 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~ 468 (621)
.+|++++|.+.+|+ +++|+||||+|||||+++|+|++ .|++|+|.+.+.++. +++++.|.......
T Consensus 15 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 15 AILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 58999999999999 99999999999999999999995 689999999987642 27888887532211
Q ss_pred cc-----------cceeecCCCCCH---HHHHHHHHHHHhhc-CC-Ccccc-ccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 469 LQ-----------VPIFEKGYEKDP---AIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 469 L~-----------v~l~~~~~~~d~---~~ia~~al~~~~~~-~~-d~vli-DtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
+. +..+......+. ...+.+.++.+... ++ +..+. ++||||+|++.||++|. .+|+++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~il 167 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEPELC 167 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 10 000000000011 12223333333331 11 23333 79999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|| ||||+|||+..+ ..+.+.+..+... +.++|++|.
T Consensus 168 lL-DEPt~~LD~~~~-~~l~~~l~~l~~~----~~tiii~sH 203 (248)
T PRK09580 168 IL-DESDSGLDIDAL-KIVADGVNSLRDG----KRSFIIVTH 203 (248)
T ss_pred EE-eCCCccCCHHHH-HHHHHHHHHHHhC----CCEEEEEeC
Confidence 99 999999999886 4566777777542 456777765
No 258
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=8.5e-19 Score=195.69 Aligned_cols=161 Identities=19% Similarity=0.093 Sum_probs=117.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh---h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---R 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---~ 467 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+.. ++|++.|..... .
T Consensus 16 ~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 16 TKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 358999999999999 99999999999999999999999999999998775531 267777753210 0
Q ss_pred ---hcccceeecC-CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 468 ---RLQVPIFEKG-YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 468 ---~L~v~l~~~~-~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
.++..+.... ........+.++++.+++.+ .+..+.++||||+|++.||++|+ .+|+++|| ||||+|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~~LD 167 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALM-----SEPDLLIL-DEPFDGLD 167 (490)
T ss_pred chhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCcccCC
Confidence 0111111100 01111233445555554433 36778899999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+ ..+.+.|..+++. +.++|++|.
T Consensus 168 ~~~~-~~l~~~l~~~~~~----g~tvii~tH 193 (490)
T PRK10938 168 VASR-QQLAELLASLHQS----GITLVLVLN 193 (490)
T ss_pred HHHH-HHHHHHHHHHHhc----CCeEEEEeC
Confidence 9986 4566788777643 566777764
No 259
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2e-18 Score=176.31 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=126.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.| ..|+|.+.+.++. ++|++.|..
T Consensus 17 ~~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 94 (251)
T PRK14270 17 KQALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP 94 (251)
T ss_pred eeeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence 358999999999999 9999999999999999999999875 7899999987652 388998875
Q ss_pred hhh-----hhcccceeecCCCC-CH---HHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 THA-----RRLQVPIFEKGYEK-DP---AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~-d~---~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
.+. +++... ...++. .. ...+.++++.+... ..+..+.++|||++|++.|+++|+ .+|+
T Consensus 95 ~~~~~tv~enl~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ 167 (251)
T PRK14270 95 NPFPMSIYDNVAYG--PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA-----VKPD 167 (251)
T ss_pred CcCCCcHHHHHHhH--HHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCC
Confidence 432 222111 111111 11 12233444444321 135567899999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|| ||||+|||+..+. .+.+.|..+.+ ..++|++|.- ... +....-.|+.+-.|+-+
T Consensus 168 llll-DEP~~~LD~~~~~-~l~~~L~~~~~-----~~tiiivsH~------~~~----~~~~~d~v~~l~~G~i~ 225 (251)
T PRK14270 168 VILM-DEPTSALDPISTL-KIEDLMVELKK-----EYTIVIVTHN------MQQ----ASRVSDYTAFFLMGDLI 225 (251)
T ss_pred EEEE-eCCcccCCHHHHH-HHHHHHHHHHh-----CCeEEEEEcC------HHH----HHHhcCEEEEEECCeEE
Confidence 9999 9999999998764 55577777753 2456676641 212 22333477888888765
No 260
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=182.13 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=123.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|.+.+|+ +++|+||||||||||++.|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 52 ~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 129 (286)
T PRK14275 52 FEAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129 (286)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence 358999999999999 999999999999999999999864 48999999886531 388888865
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++............ ....+.++++.+.. ...+..+..+|||++|++.|+++|+ .+|+++
T Consensus 130 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~-----~~p~ll 204 (286)
T PRK14275 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA-----VEPEIL 204 (286)
T ss_pred CCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2222221100011110 11223344444332 1235567889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+.. ..++|++|. ....+. ...-.|+++..|+-+
T Consensus 205 lL-DEPt~gLD~~~~-~~l~~~L~~~~~-----~~tvIivsH------~~~~~~----~~~d~i~~L~~G~i~ 260 (286)
T PRK14275 205 LL-DEPTSALDPKAT-AKIEDLIQELRG-----SYTIMIVTH------NMQQAS----RVSDYTMFFYEGVLV 260 (286)
T ss_pred EE-eCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEeC------CHHHHH----HhCCEEEEEECCEEE
Confidence 99 999999999886 455577777753 245666654 222222 223367777777654
No 261
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=177.95 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=123.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|++++|++.+|+ +++|+||||||||||+++|+|++.+ +.|+|.+.+.++. +++++.|...
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 17 QALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred eeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 58999999999999 9999999999999999999998763 6899999986642 3788888653
Q ss_pred hhh-----hcccceeecCCCC--CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 465 HAR-----RLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 465 ~~~-----~L~v~l~~~~~~~--d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+.. ++.......+... .....+.++++.+... ..+..+.++|||++|++.|+++|. .+|+++|
T Consensus 95 ~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lll 169 (250)
T PRK14240 95 PFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA-----VEPEVLL 169 (250)
T ss_pred cCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 322 1111110011100 1122333334333221 124556789999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+ ||||+|||+..+. .+.+.|..+.. +.+++++|. ....+. ...-.|+++..|+-+
T Consensus 170 l-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sH------~~~~~~----~~~d~v~~l~~G~i~ 224 (250)
T PRK14240 170 M-DEPTSALDPISTL-KIEELIQELKK-----DYTIVIVTH------NMQQAS----RISDKTAFFLNGEIV 224 (250)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEEe------CHHHHH----hhCCEEEEEECCEEE
Confidence 9 9999999999874 55577777642 346677664 222222 223367888888765
No 262
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4.3e-19 Score=179.22 Aligned_cols=176 Identities=21% Similarity=0.202 Sum_probs=120.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L-- 469 (621)
.+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.+.++. ++++++|...+...-
T Consensus 15 ~~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 15 PVLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 48899999999999 99999999999999999999999999999999887652 288888875433210
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHH------hhc--CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEA------TRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~------~~~--~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
++.+... ...... ....+... ... ++ +..+..+|||++|++.|+++|+ .+|+++|| ||
T Consensus 93 ~nl~~~~~--~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~-----~~p~llll-DE 163 (236)
T cd03253 93 YNIRYGRP--DATDEE-VIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL-----KNPPILLL-DE 163 (236)
T ss_pred HHHhhcCC--CCCHHH-HHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eC
Confidence 1111100 111111 11111111 100 11 2235689999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|||+..+. .+.+.|..+.+ +.++|++|.-.. .+ . . .-.++++..|+-+
T Consensus 164 P~~~LD~~~~~-~l~~~l~~~~~-----~~tiii~sh~~~------~~-~---~-~d~~~~l~~g~i~ 214 (236)
T cd03253 164 ATSALDTHTER-EIQAALRDVSK-----GRTTIVIAHRLS------TI-V---N-ADKIIVLKDGRIV 214 (236)
T ss_pred CcccCCHHHHH-HHHHHHHHhcC-----CCEEEEEcCCHH------HH-H---h-CCEEEEEECCEEE
Confidence 99999998864 45566665542 556777764221 11 1 1 3477888888765
No 263
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.78 E-value=9.1e-19 Score=169.92 Aligned_cols=132 Identities=18% Similarity=0.222 Sum_probs=103.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~v~ 472 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++.|..|+|.+.+.++. ++++++|...+
T Consensus 16 ~~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~------- 86 (178)
T cd03247 16 QVLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYL------- 86 (178)
T ss_pred cceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCee-------
Confidence 48999999999999 99999999999999999999999999999999987642 24555543211
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~ 552 (621)
+ +..+ .+ .++..+|||++|++.|+++|+ .+|+++|| ||||+|||+..+ ..+.+
T Consensus 87 -~-------~~tv-~~-----------~i~~~LS~G~~qrv~laral~-----~~p~~lll-DEP~~~LD~~~~-~~l~~ 139 (178)
T cd03247 87 -F-------DTTL-RN-----------NLGRRFSGGERQRLALARILL-----QDAPIVLL-DEPTVGLDPITE-RQLLS 139 (178)
T ss_pred -e-------cccH-HH-----------hhcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCcccCCHHHH-HHHHH
Confidence 0 0001 11 116689999999999999999 99999999 999999999876 45557
Q ss_pred HHHHhhcCCCCCCceEEEecc
Q 007024 553 KLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK 573 (621)
.+..+.+ +.+++++|.
T Consensus 140 ~l~~~~~-----~~tii~~sh 155 (178)
T cd03247 140 LIFEVLK-----DKTLIWITH 155 (178)
T ss_pred HHHHHcC-----CCEEEEEec
Confidence 7766631 456677664
No 264
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=2.1e-18 Score=186.55 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=146.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARR 468 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~~~ 468 (621)
.+.++++|||++.+|+ |.+|+|.||+|||||+++|.|+++|++|+|.+.|..+ ..||.|.|...+.++
T Consensus 16 ~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 5778999999999999 9999999999999999999999999999999999876 239999999877766
Q ss_pred cc----cceee---cCCCCCHHHHHHHHHHHHhhc----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 469 LQ----VPIFE---KGYEKDPAIVAKEAIQEATRN----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 469 L~----v~l~~---~~~~~d~~~ia~~al~~~~~~----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
+- +-+.. .....+......++.+..... +.+..+.|+|=|+||++.|.++|. .+++++|| |||
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy-----r~a~iLIL-DEP 167 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY-----RGARLLIL-DEP 167 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh-----cCCCEEEE-cCC
Confidence 62 22211 111123333333333333222 346788999999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec-cccccccchhHHHHhHHHhCCcEEEEecCCCCC--c-ccCCCHH
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT--D-LKKLNVK 613 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT-K~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~--D-L~~~~~~ 613 (621)
|+-|.|...- .|-+.++.+.+. +.++|++| |++| +..++. .+..+--|..+- | ....+.+
T Consensus 168 TaVLTP~E~~-~lf~~l~~l~~~----G~tIi~ITHKL~E-------v~~iaD----rvTVLR~Gkvvgt~~~~~~~t~~ 231 (501)
T COG3845 168 TAVLTPQEAD-ELFEILRRLAAE----GKTIIFITHKLKE-------VMAIAD----RVTVLRRGKVVGTVDPVAETTEE 231 (501)
T ss_pred cccCCHHHHH-HHHHHHHHHHHC----CCEEEEEeccHHH-------HHHhhC----eeEEEeCCeEEeeecCCCCCCHH
Confidence 9999998864 455888888876 45555554 4555 444444 667777776542 3 6677788
Q ss_pred HHHHHh
Q 007024 614 SIVKTL 619 (621)
Q Consensus 614 ~~v~~L 619 (621)
.++..+
T Consensus 232 ela~lM 237 (501)
T COG3845 232 ELAELM 237 (501)
T ss_pred HHHHHh
Confidence 877654
No 265
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=7.4e-19 Score=179.74 Aligned_cols=156 Identities=15% Similarity=0.152 Sum_probs=109.8
Q ss_pred cccccccccc-----cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcc----cc
Q 007024 402 ILRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ----VP 472 (621)
Q Consensus 402 iL~dIs~~i~-----~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~----v~ 472 (621)
.+.++++++. +|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. +++++.|.......+. +.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 9 TLGEFTLEVEGGSISESE--VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred ccCcEEEEEecCCcCCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHH
Confidence 4555666554 688 99999999999999999999999999999998875 6888888643211111 11
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
........ ....+.++++.+.... .+..+..+|||++|++.||++|+ .+|+++|| ||||++||+..+. .+.
T Consensus 84 ~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~-----~~p~llll-DEPt~~LD~~~~~-~l~ 155 (246)
T cd03237 84 SITKDFYT-HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLS-----KDADIYLL-DEPSAYLDVEQRL-MAS 155 (246)
T ss_pred HHhhhccc-cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCcccCCHHHHH-HHH
Confidence 11011111 1122334444443332 35667889999999999999999 99999999 9999999998864 555
Q ss_pred HHHHHhhcCCCCCCceEEEecc
Q 007024 552 QKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.|..+... .+.++|++|.
T Consensus 156 ~~l~~~~~~---~~~tiiivsH 174 (246)
T cd03237 156 KVIRRFAEN---NEKTAFVVEH 174 (246)
T ss_pred HHHHHHHHh---cCCEEEEEeC
Confidence 777776542 2566777775
No 266
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.78 E-value=7.8e-19 Score=181.47 Aligned_cols=182 Identities=21% Similarity=0.118 Sum_probs=127.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhh--h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRT--H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~--~ 465 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|++|+|.+.+.++. ++|++.|... +
T Consensus 25 ~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 468999999999999 99999999999999999999999999999999987641 3888888752 2
Q ss_pred hhhcc------cceeecCCCCCH---HHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ARRLQ------VPIFEKGYEKDP---AIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ~~~L~------v~l~~~~~~~d~---~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
..... .++. .....+. ...+.++++.++.. ..+..+..+|||++|++.|+++|+ .+|+++||
T Consensus 103 ~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~-----~~p~lllL- 175 (268)
T PRK10419 103 NPRKTVREIIREPLR-HLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA-----VEPKLLIL- 175 (268)
T ss_pred CCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 11111 1110 0011111 12344555554442 125567789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.... +.++|++|.- ... +....-.|+++..|+.+
T Consensus 176 DEPt~~LD~~~~~-~~~~~l~~~~~~~---~~tiiivsH~------~~~----i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 176 DEAVSNLDLVLQA-GVIRLLKKLQQQF---GTACLFITHD------LRL----VERFCQRVMVMDNGQIV 231 (268)
T ss_pred eCCCcccCHHHHH-HHHHHHHHHHHHc---CcEEEEEECC------HHH----HHHhCCEEEEEECCEEe
Confidence 9999999998764 5557777765432 5567776642 111 22223366777777643
No 267
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-18 Score=179.75 Aligned_cols=160 Identities=21% Similarity=0.233 Sum_probs=113.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|.+.+|+ +++|+|+||+|||||++.|+|++.| ..|+|.+.+.++. +++++.|..
T Consensus 21 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 21 FMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 458999999999999 9999999999999999999999976 6899999987652 278888875
Q ss_pred hhh-----hhcccceeecCCCCCHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 464 THA-----RRLQVPIFEKGYEKDPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+. +++...........+....+.++++.+... ..+.....+|||++|++.|+++|. .+|+++||
T Consensus 99 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~-----~~p~llll 173 (261)
T PRK14263 99 NPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA-----TEPEVLLL 173 (261)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 432 222111110011111112334444443321 112345678999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+|+|+..+. .+.+.+..+.+ +.+.|++|.
T Consensus 174 -DEPtsgLD~~~~~-~l~~~l~~~~~-----~~tii~isH 206 (261)
T PRK14263 174 -DEPCSALDPIATR-RVEELMVELKK-----DYTIALVTH 206 (261)
T ss_pred -eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC
Confidence 9999999999874 55577776642 345666553
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=175.22 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=124.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++. |..|+|.+.+.++. ++++++|..
T Consensus 18 ~~~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 95 (251)
T PRK14244 18 KQILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP 95 (251)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence 458999999999999 999999999999999999999986 46999999886541 388888865
Q ss_pred hhh-----hhcccceeecCCCCCH---HHHHHHHHHHHhhcC-----CCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THA-----RRLQVPIFEKGYEKDP---AIVAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~-----~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+. +++............. ...+.++++.++... .+..+..+|||++|++.|+++|. .+|++
T Consensus 96 ~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~l 170 (251)
T PRK14244 96 NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA-----VKPTM 170 (251)
T ss_pred ccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh-----cCCCE
Confidence 322 2221110001111111 122334444443321 23456789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|||+..+. .+.+.|..+.. +.+++++|. ..-.+. ...-.|+.+..|+-+
T Consensus 171 lll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiiiisH------~~~~~~----~~~d~i~~l~~G~i~ 227 (251)
T PRK14244 171 LLM-DEPCSALDPVATN-VIENLIQELKK-----NFTIIVVTH------SMKQAK----KVSDRVAFFQSGRIV 227 (251)
T ss_pred EEE-eCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEeC------CHHHHH----hhcCEEEEEECCEEE
Confidence 999 9999999998764 55577777642 466777764 222222 223367778777754
No 269
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.7e-18 Score=179.21 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=124.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+|+||+|||||+++|+|++. |+.|+|.+.+.++. ++|+++|..
T Consensus 37 ~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 37 DHALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 358999999999999 999999999999999999999987 58999999987642 388888875
Q ss_pred hh-----hhhcccceeecCCCCC-H-HHHHHHHHHHHh----h-cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKD-P-AIVAKEAIQEAT----R-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d-~-~~ia~~al~~~~----~-~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++............ . ...+.++++.+. . ...+..+..+|||++|++.|+++|+ .+|+++
T Consensus 115 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~-----~~p~ll 189 (271)
T PRK14238 115 NPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA-----IEPDVI 189 (271)
T ss_pred ccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 32 2222211100011110 0 112223332221 1 1124567789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|+|+..+ ..+.+.|..+.. +.++|++|. ....+ ....-.|+.+..|+.+
T Consensus 190 lL-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiiivsH------~~~~i----~~~~d~i~~l~~G~i~ 245 (271)
T PRK14238 190 LM-DEPTSALDPIST-LKVEELVQELKK-----DYSIIIVTH------NMQQA----ARISDKTAFFLNGYVN 245 (271)
T ss_pred EE-eCCCCcCCHHHH-HHHHHHHHHHHc-----CCEEEEEEc------CHHHH----HHhCCEEEEEECCEEE
Confidence 99 999999999987 455577777753 345666654 12222 2333477778877765
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.78 E-value=8.8e-19 Score=193.64 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=138.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc----CcEEEEccccc-------------ceeeeeeh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----KVSVMMAACDT-------------FRSGAVEQ 461 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~----~GkV~I~~~Dt-------------~RigaveQ 461 (621)
...+++||||++.+|| +++|||.+||||||+...|.|++.+. +|+|.+.+.|. -+|++++|
T Consensus 21 ~~~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 21 RVPAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred ceeeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 3578999999999999 99999999999999999999999877 79999999876 24999999
Q ss_pred hhh--hhhhccc-----ceeecCCCC---CHHHHHHHHHHHHhhcCC---CccccccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 462 LRT--HARRLQV-----PIFEKGYEK---DPAIVAKEAIQEATRNGS---DVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 462 l~~--~~~~L~v-----~l~~~~~~~---d~~~ia~~al~~~~~~~~---d~vliDtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
... +...+.+ ..+...+.. +....+.+.++..++.+. +..+..+||||+||+.||++|+ .+|
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa-----~~P 173 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA-----LKP 173 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh-----CCC
Confidence 752 1111111 111111211 222334444444444333 3478999999999999999999 999
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+++|+ ||||++||+..|.+.+ ++|+++.+ ..+++.+++|. ..|.+-.++. .|+.+=.|+-+.
T Consensus 174 ~LLIa-DEPTTaLDvt~q~qIL-~llk~l~~---e~g~a~l~ITH------Dl~Vva~~aD----rv~Vm~~G~iVE 235 (539)
T COG1123 174 KLLIA-DEPTTALDVTTQAQIL-DLLKDLQR---ELGMAVLFITH------DLGVVAELAD----RVVVMYKGEIVE 235 (539)
T ss_pred CEEEE-CCCccccCHHHHHHHH-HHHHHHHH---HcCcEEEEEcC------CHHHHHHhcC----eEEEEECCEEEE
Confidence 99999 9999999999997655 67777764 45889999884 4555555555 788888887763
No 271
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.9e-18 Score=176.07 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=124.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh--h---cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~---~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. | +.|+|.+.+.++. ++|+++|..
T Consensus 25 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 25 HHALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred eeeEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 358999999999999 999999999999999999999987 3 5899999887642 378888865
Q ss_pred hhh-----hhcccceeecCCC-CCHH---HHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 THA-----RRLQVPIFEKGYE-KDPA---IVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~-~d~~---~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
.+. +++... ....+ .... ..+.++++.+... ..+..+..+|||++|++.|+++|+ .+|+
T Consensus 103 ~~~~~tv~enl~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~-----~~p~ 175 (259)
T PRK14274 103 NPFPQSIFDNVAYG--PRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA-----TNPD 175 (259)
T ss_pred cccccCHHHHHHhH--HHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh-----cCCC
Confidence 322 222111 11111 1111 2233344443321 134567789999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|| ||||+|||+..+ ..+.+.|..+.. +.+.|++|.- ... +....-.|+++..|+.+
T Consensus 176 llll-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiiivtH~------~~~----~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 176 VLLM-DEPTSALDPVST-RKIEELILKLKE-----KYTIVIVTHN------MQQ----AARVSDQTAFFYMGELV 233 (259)
T ss_pred EEEE-cCCcccCCHHHH-HHHHHHHHHHhc-----CCEEEEEEcC------HHH----HHHhCCEEEEEECCEEE
Confidence 9999 999999999886 455677777643 3466776641 112 22333467778777765
No 272
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.3e-18 Score=177.41 Aligned_cols=181 Identities=18% Similarity=0.231 Sum_probs=123.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.+ .+|+|.+.+.++. ++++++|..
T Consensus 16 ~~~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14262 16 KKAVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93 (250)
T ss_pred ceeEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence 358999999999999 9999999999999999999999874 7899999986641 388888865
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++............ ....+.++++.+... ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~-----~~p~ll 168 (250)
T PRK14262 94 TPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA-----VEPEVI 168 (250)
T ss_pred ccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh-----CCCCEE
Confidence 432 222111110010111 112223334433321 134567889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+. .+.+.+..+.+ +.+.+++|. | .-.+. ...-.|..+..|+-+
T Consensus 169 ll-DEP~~~LD~~~~~-~l~~~l~~~~~-----~~tili~sH-~-----~~~~~----~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 169 LL-DEPTSALDPIATQ-RIEKLLEELSE-----NYTIVIVTH-N-----IGQAI----RIADYIAFMYRGELI 224 (250)
T ss_pred EE-eCCccccCHHHHH-HHHHHHHHHhc-----CcEEEEEeC-C-----HHHHH----HhCCEEEEEECCEEE
Confidence 99 9999999999864 56677777643 346667664 1 11222 222367777777654
No 273
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=1.7e-18 Score=170.61 Aligned_cols=140 Identities=21% Similarity=0.210 Sum_probs=105.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcCcEEEEcccccc------eeeeeehhhhhhhhccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDTF------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~GkV~I~~~Dt~------RigaveQl~~~~~~L~v 471 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++ .|..|+|.+.+.++. +++++.|...+...+
T Consensus 22 ~~~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~-- 97 (194)
T cd03213 22 KQLLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTL-- 97 (194)
T ss_pred ccceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCC--
Confidence 458999999999999 99999999999999999999999 999999999988752 255555542211110
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
.. .+.+.+... +..+|||++|++.|+++|+ .+|+++|+ |||++|||+..+ +.+.
T Consensus 98 ---------t~----~~~i~~~~~------~~~LS~G~~qrv~laral~-----~~p~illl-DEP~~~LD~~~~-~~l~ 151 (194)
T cd03213 98 ---------TV----RETLMFAAK------LRGLSGGERKRVSIALELV-----SNPSLLFL-DEPTSGLDSSSA-LQVM 151 (194)
T ss_pred ---------cH----HHHHHHHHH------hccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCCcCCCHHHH-HHHH
Confidence 11 111111110 1188999999999999999 99999999 999999999886 4555
Q ss_pred HHHHHhhcCCCCCCceEEEecc
Q 007024 552 QKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.|..+... +.+.|++|.
T Consensus 152 ~~l~~~~~~----~~tiii~sh 169 (194)
T cd03213 152 SLLRRLADT----GRTIICSIH 169 (194)
T ss_pred HHHHHHHhC----CCEEEEEec
Confidence 777776532 566777765
No 274
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.78 E-value=1.2e-18 Score=196.05 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=126.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcCcEEEEc-----------------------ccc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMA-----------------------ACD-- 452 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~GkV~I~-----------------------~~D-- 452 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++ .|+.|+|.+. +.+
T Consensus 13 ~~~l~~is~~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~ 90 (520)
T TIGR03269 13 KEVLKNISFTIEEGE--VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLE 90 (520)
T ss_pred eEeeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccc
Confidence 358999999999999 99999999999999999999997 6999999886 111
Q ss_pred -----c------------ceeeeeehh-hhhh------hhcccceeecCCCC-CHHHHHHHHHHHHhhcCC-Cccccccc
Q 007024 453 -----T------------FRSGAVEQL-RTHA------RRLQVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTA 506 (621)
Q Consensus 453 -----t------------~RigaveQl-~~~~------~~L~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtS 506 (621)
. .++|+++|. ..+. +++..++...++.. .....+.++++.++.... +..+.++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 170 (520)
T TIGR03269 91 PEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLS 170 (520)
T ss_pred ccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCC
Confidence 1 137888885 3222 22222211111111 112234445555544332 56678999
Q ss_pred hhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHH
Q 007024 507 GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALS 586 (621)
Q Consensus 507 Gg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls 586 (621)
|||+||+.||++|+ .+|+++|| ||||++||+..+. .+.+.|..+... .+.++|++|.- ...
T Consensus 171 gGq~qrv~iA~al~-----~~p~lllL-DEPt~~LD~~~~~-~l~~~l~~l~~~---~g~tviivtHd------~~~--- 231 (520)
T TIGR03269 171 GGEKQRVVLARQLA-----KEPFLFLA-DEPTGTLDPQTAK-LVHNALEEAVKA---SGISMVLTSHW------PEV--- 231 (520)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEe-eCCcccCCHHHHH-HHHHHHHHHHHh---cCcEEEEEeCC------HHH---
Confidence 99999999999999 99999999 9999999999874 555677777542 25677777751 222
Q ss_pred hHHHhCCcEEEEecCCCC
Q 007024 587 MVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 587 ~~~~~g~PI~fvg~Gq~v 604 (621)
+....-.|+++-.|+-+
T Consensus 232 -~~~~~d~i~~l~~G~i~ 248 (520)
T TIGR03269 232 -IEDLSDKAIWLENGEIK 248 (520)
T ss_pred -HHHhcCEEEEEeCCEEe
Confidence 22333367777777644
No 275
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=177.61 Aligned_cols=181 Identities=16% Similarity=0.217 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |++|+|.+.+.++. ++|+++|..
T Consensus 33 ~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 110 (267)
T PRK14237 33 KEAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110 (267)
T ss_pred eeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence 458999999999999 999999999999999999999986 47999999987641 388888864
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++.......+.... ....+.++++.+.+. ..+..+.++|||++|++.|+++|+ .+|+++
T Consensus 111 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~-----~~p~ll 185 (267)
T PRK14237 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA-----VKPDIL 185 (267)
T ss_pred ccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 2222221111111111 112233334443321 135567889999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+.. +.++|++|. | ... +....-.|.++..|+-+
T Consensus 186 lL-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiii~tH-~-----~~~----~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 186 LM-DEPASALDPIST-MQLEETMFELKK-----NYTIIIVTH-N-----MQQ----AARASDYTAFFYLGDLI 241 (267)
T ss_pred EE-eCCcccCCHHHH-HHHHHHHHHHhc-----CCEEEEEec-C-----HHH----HHHhcCEEEEEECCEEE
Confidence 99 999999999876 455577777742 346677664 1 112 22333467777777754
No 276
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=9.2e-19 Score=197.05 Aligned_cols=154 Identities=20% Similarity=0.162 Sum_probs=116.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhh-----hhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRT-----HAR 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~-----~~~ 467 (621)
.+|+|+||++++|+ .++|+||+||||||+++.|+|++.|++|+|.+++.|+. ++|+|+|... ..+
T Consensus 349 ~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~e 426 (529)
T TIGR02868 349 PVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRD 426 (529)
T ss_pred ceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHH
Confidence 58999999999999 99999999999999999999999999999999998874 5899999864 344
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 468 RLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 468 ~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
|+.. ... ..+. +...++++.+.. .++|..+. .+|||++||.+|||+|. .+|+++|| |
T Consensus 427 NI~~--g~~--~~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall-----~~~~iliL-D 495 (529)
T TIGR02868 427 NLRL--GRP--DATD-EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALL-----ADAPILLL-D 495 (529)
T ss_pred HHhc--cCC--CCCH-HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 4322 111 1122 223344443321 34565553 48999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+++|+.... .+.+.+..+. .+.+.|++|+
T Consensus 496 E~TSaLD~~te~-~I~~~l~~~~-----~~~TvIiItH 527 (529)
T TIGR02868 496 EPTEHLDAGTES-ELLEDLLAAL-----SGKTVVVITH 527 (529)
T ss_pred CCcccCCHHHHH-HHHHHHHHhc-----CCCEEEEEec
Confidence 999999998764 4445555442 2567777764
No 277
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.2e-18 Score=175.68 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=124.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc----------eeeeeehhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF----------RSGAVEQLRT 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~----------RigaveQl~~ 464 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.+ ..|+|.+.+.++. ++|++.|...
T Consensus 16 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 93 (249)
T PRK14253 16 NQALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN 93 (249)
T ss_pred eeeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC
Confidence 358999999999999 9999999999999999999999886 4899999886541 3888888753
Q ss_pred hh-----hhcccceeecCCCCCH--HHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 465 HA-----RRLQVPIFEKGYEKDP--AIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 465 ~~-----~~L~v~l~~~~~~~d~--~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+. +++............. ...+.++++.+.. ...+..+..+|||++|++.|+++|. .+|+++|
T Consensus 94 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~lll 168 (249)
T PRK14253 94 PFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA-----MEPDVIL 168 (249)
T ss_pred cCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 32 2221111000101111 1222333333322 1124556789999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||+|+|+..+ ..+.+.|..+.+ ..++|++|.- .-. +....-.++++..|+-+
T Consensus 169 l-DEP~~~LD~~~~-~~l~~~l~~~~~-----~~tii~~sh~------~~~----~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 169 M-DEPTSALDPIAT-HKIEELMEELKK-----NYTIVIVTHS------MQQ----ARRISDRTAFFLMGELV 223 (249)
T ss_pred E-eCCCccCCHHHH-HHHHHHHHHHhc-----CCeEEEEecC------HHH----HHHhCCEEEEEECCEEE
Confidence 9 999999999876 456677877753 2466776642 111 22333477777777754
No 278
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2e-18 Score=178.80 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=124.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.+ ..|+|.+.+.++. +++++.|..
T Consensus 38 ~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 38 KQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 358999999999999 9999999999999999999999873 7999999887642 378888864
Q ss_pred hh-----hhhcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++.......+.... ....+.++++.+... ..+.....+|||++|++.|+++|+ .+|+++
T Consensus 116 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 190 (272)
T PRK14236 116 NPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA-----IEPEVL 190 (272)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH-----CCCCEE
Confidence 32 2222211100010011 112233444443321 124566789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|+|+..+ ..+.+.+..+.+ +.++|++|.-. .. +....-.|+.+..|+-+
T Consensus 191 lL-DEPt~gLD~~~~-~~l~~~L~~~~~-----~~tiiivtH~~------~~----~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 191 LL-DEPTSALDPIST-LKIEELITELKS-----KYTIVIVTHNM------QQ----AARVSDYTAFMYMGKLV 246 (272)
T ss_pred EE-eCCcccCCHHHH-HHHHHHHHHHHh-----CCeEEEEeCCH------HH----HHhhCCEEEEEECCEEE
Confidence 99 999999999886 456677777753 34666666422 12 22233367777777654
No 279
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2e-18 Score=169.69 Aligned_cols=140 Identities=17% Similarity=0.181 Sum_probs=104.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcCcEEEEccccc-----ceeeeeehhhhhhhhcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~GkV~I~~~Dt-----~RigaveQl~~~~~~L~v~ 472 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++ .++.|+|.+.+.++ .+++++.|...+...+.
T Consensus 20 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~t-- 95 (192)
T cd03232 20 RQLLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLT-- 95 (192)
T ss_pred eEeEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCc--
Confidence 458999999999999 99999999999999999999975 47899999998775 23666666432211111
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~ 552 (621)
. .+.+.+.... + .+|||++|++.|+++|+ .+|+++|+ |||++|+|+..+. .+.+
T Consensus 96 ---------v----~~~l~~~~~~--~----~LSgGe~qrv~la~al~-----~~p~vlll-DEP~~~LD~~~~~-~l~~ 149 (192)
T cd03232 96 ---------V----REALRFSALL--R----GLSVEQRKRLTIGVELA-----AKPSILFL-DEPTSGLDSQAAY-NIVR 149 (192)
T ss_pred ---------H----HHHHHHHHHH--h----cCCHHHhHHHHHHHHHh-----cCCcEEEE-eCCCcCCCHHHHH-HHHH
Confidence 1 1111111000 1 89999999999999999 99999999 9999999998874 5557
Q ss_pred HHHHhhcCCCCCCceEEEecc
Q 007024 553 KLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK 573 (621)
.+..+... +.+.+++|.
T Consensus 150 ~l~~~~~~----~~tiiivtH 166 (192)
T cd03232 150 FLKKLADS----GQAILCTIH 166 (192)
T ss_pred HHHHHHHc----CCEEEEEEc
Confidence 77776542 556777764
No 280
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.6e-18 Score=177.94 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=113.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|++.+ ..|+|.+.+.++. +++++.|..
T Consensus 20 ~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 97 (259)
T PRK14260 20 SKAIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP 97 (259)
T ss_pred eEeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence 358999999999999 9999999999999999999999885 4799999887642 388888875
Q ss_pred hhh-----hhcccceeecC-CC-CCHHHHHHHHHHHHhh-----cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKG-YE-KDPAIVAKEAIQEATR-----NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~-~~-~d~~~ia~~al~~~~~-----~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++........ +. ......+.++++.+.. ...+.....+|||++|++.|+++|+ .+|+++
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 172 (259)
T PRK14260 98 NPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA-----IKPKVL 172 (259)
T ss_pred ccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 332 22211110000 11 1111233344443332 1235567789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|| ||||+|+|+..+. .+.+.|..+.. ..+++++|.
T Consensus 173 lL-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tiii~tH 207 (259)
T PRK14260 173 LM-DEPCSALDPIATM-KVEELIHSLRS-----ELTIAIVTH 207 (259)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC
Confidence 99 9999999998864 55577776643 246667664
No 281
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.1e-18 Score=174.91 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=123.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh--h---cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~---~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++. | +.|+|.+.+.++. ++|++.|..
T Consensus 18 ~~~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 95 (252)
T PRK14255 18 FEALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP 95 (252)
T ss_pred eeEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence 358999999999999 999999999999999999999865 4 4899999887541 388888864
Q ss_pred hh-----hhhcccceeecCCCC-CH-HHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 TH-----ARRLQVPIFEKGYEK-DP-AIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~-----~~~L~v~l~~~~~~~-d~-~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+ .+++...+....... +. ...+.++++.+... ..+..+..+||||+|++.|+++|+ .+|+++
T Consensus 96 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 170 (252)
T PRK14255 96 NPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA-----VKPDVI 170 (252)
T ss_pred ccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 32 222221111011111 11 11222333333221 124567789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+ ..+.+.|..+.. ..++|++|.- .. .+....-.|+.+..|+-+
T Consensus 171 ll-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tii~vsH~------~~----~~~~~~d~i~~l~~G~i~ 226 (252)
T PRK14255 171 LL-DEPTSALDPISS-TQIENMLLELRD-----QYTIILVTHS------MH----QASRISDKTAFFLTGNLI 226 (252)
T ss_pred EE-cCCCccCCHHHH-HHHHHHHHHHHh-----CCEEEEEECC------HH----HHHHhCCEEEEEECCEEE
Confidence 99 999999999886 456677777753 2466776642 11 233334477788777764
No 282
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.77 E-value=1.4e-18 Score=177.34 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=112.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccc----------eeeeeehhhhhhh-
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR- 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~- 467 (621)
.+|++++|++.+|+ +++|+|+||||||||+++|+|+ +.|++|+|.+.+.++. .++++.|...+..
T Consensus 21 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 98 (252)
T CHL00131 21 EILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPG 98 (252)
T ss_pred EeeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccccccc
Confidence 58999999999999 9999999999999999999997 5789999999887642 1556666543221
Q ss_pred -----hcccceeec----CCC-CCH---HHHHHHHHHHHhhc--CCCcccc-ccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 468 -----RLQVPIFEK----GYE-KDP---AIVAKEAIQEATRN--GSDVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 468 -----~L~v~l~~~----~~~-~d~---~~ia~~al~~~~~~--~~d~vli-DtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
++....... ... .+. ...+.++++.++.. ..+..+. .+|||++|++.|+++|+ .+|+++
T Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~ll 173 (252)
T CHL00131 99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL-----LDSELA 173 (252)
T ss_pred ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 111111000 000 011 12233444444433 1244555 59999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|| ||||+|||+..+ ..|.+.|..+... +.++|++|.
T Consensus 174 ll-DEPt~~LD~~~~-~~l~~~l~~~~~~----g~tii~~tH 209 (252)
T CHL00131 174 IL-DETDSGLDIDAL-KIIAEGINKLMTS----ENSIILITH 209 (252)
T ss_pred EE-cCCcccCCHHHH-HHHHHHHHHHHhC----CCEEEEEec
Confidence 99 999999999986 4555777776532 566777775
No 283
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.77 E-value=2e-18 Score=162.42 Aligned_cols=112 Identities=26% Similarity=0.268 Sum_probs=95.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~ 480 (621)
.+|++++|.+.+|+ +++|+||||+||||+++.|+|+++|+.|+|.+.+. .++++++|
T Consensus 14 ~~l~~~~~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~------------------- 70 (144)
T cd03221 14 LLLKDISLTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ------------------- 70 (144)
T ss_pred eEEEeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc-------------------
Confidence 48999999999999 99999999999999999999999999999999874 34666655
Q ss_pred CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 481 d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
+|+|++|++.|+++|. .+|+++|+ |||++|+|+..+. .+.+.++.+
T Consensus 71 ------------------------lS~G~~~rv~laral~-----~~p~illl-DEP~~~LD~~~~~-~l~~~l~~~--- 116 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLL-----ENPNLLLL-DEPTNHLDLESIE-ALEEALKEY--- 116 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHHH-HHHHHHHHc---
Confidence 9999999999999999 99999999 9999999998864 444566544
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
..+.+++|.
T Consensus 117 ----~~til~~th 125 (144)
T cd03221 117 ----PGTVILVSH 125 (144)
T ss_pred ----CCEEEEEEC
Confidence 235666664
No 284
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.77 E-value=1.8e-18 Score=171.18 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=116.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccc----------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~ 467 (621)
..+|++++|++.+|+ +++|+|+||+|||||++.|+|+ +.|+.|+|.+.+.++. ++++++|......
T Consensus 13 ~~~l~~is~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (200)
T cd03217 13 KEILKGVNLTIKKGE--VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIP 90 (200)
T ss_pred EEeeeccceEECCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhcc
Confidence 358999999999999 9999999999999999999999 4789999999987652 1556665433211
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 468 ~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.+ ...+.+ +.....+||||+|++.|+++|+ .+|+++|| ||||+|+|+..+
T Consensus 91 ~~---------------~~~~~l--------~~~~~~LS~G~~qrv~laral~-----~~p~illl-DEPt~~LD~~~~- 140 (200)
T cd03217 91 GV---------------KNADFL--------RYVNEGFSGGEKKRNEILQLLL-----LEPDLAIL-DEPDSGLDIDAL- 140 (200)
T ss_pred Cc---------------cHHHHH--------hhccccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCccCCHHHH-
Confidence 10 011111 1122479999999999999999 99999999 999999999886
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHH-hCCcEEEEecCCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV-SGAPVMFVGCGQSYT 605 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~-~g~PI~fvg~Gq~v~ 605 (621)
..|.+.|..+.+. +.+++++|.- .. .+.. ..-.++.+..|+-+.
T Consensus 141 ~~l~~~L~~~~~~----~~tiii~sh~------~~----~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 141 RLVAEVINKLREE----GKSVLIITHY------QR----LLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred HHHHHHHHHHHHC----CCEEEEEecC------HH----HHHHhhCCEEEEEECCEEEE
Confidence 4566777777542 4567776641 11 1222 344777777777653
No 285
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=2.4e-18 Score=167.75 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=95.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
..++.++ +.+++|+ +++|+||||||||||+++|+|++.|++|+|.+.+.+ ++++.|...
T Consensus 13 ~~~l~~~-~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~~--------------- 71 (177)
T cd03222 13 FFLLVEL-GVVKEGE--VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYID--------------- 71 (177)
T ss_pred EEEEccC-cEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccCC---------------
Confidence 3567774 8899999 999999999999999999999999999999998753 444444210
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
+||||+|++.++++|+ .+|+++|+ ||||+++|+..+. .+.+.+..+..
T Consensus 72 -------------------------LSgGq~qrv~laral~-----~~p~lllL-DEPts~LD~~~~~-~l~~~l~~~~~ 119 (177)
T cd03222 72 -------------------------LSGGELQRVAIAAALL-----RNATFYLF-DEPSAYLDIEQRL-NAARAIRRLSE 119 (177)
T ss_pred -------------------------CCHHHHHHHHHHHHHh-----cCCCEEEE-ECCcccCCHHHHH-HHHHHHHHHHH
Confidence 8999999999999999 99999999 9999999998864 55567766653
Q ss_pred CCCCCCceEEEecc
Q 007024 560 SPNPQLIDGILLTK 573 (621)
Q Consensus 560 ~~~~~~it~IIlTK 573 (621)
.. +.+++++|.
T Consensus 120 ~~---~~tiiivsH 130 (177)
T cd03222 120 EG---KKTALVVEH 130 (177)
T ss_pred cC---CCEEEEEEC
Confidence 21 256677665
No 286
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.77 E-value=5.1e-18 Score=175.33 Aligned_cols=178 Identities=16% Similarity=0.114 Sum_probs=120.6
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh------hhhhhccc
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR------THARRLQV 471 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~------~~~~~L~v 471 (621)
....+|++++|.+.+|+ +++|+||||+|||||+++|+|++.|..|+|.+.+.. +++.|.. +..+++..
T Consensus 35 ~~~~il~~is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~----~~~~~~~~~~~~~tv~enl~~ 108 (264)
T PRK13546 35 KTFFALDDISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV----SVIAISAGLSGQLTGIENIEF 108 (264)
T ss_pred CceEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE----eEEecccCCCCCCcHHHHHHH
Confidence 34578999999999999 999999999999999999999999999999988742 2222211 22222211
Q ss_pred ceeecCCCCCHHH---HHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 472 PIFEKGYEKDPAI---VAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 472 ~l~~~~~~~d~~~---ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.... .+.+... .+..++..+.... .+..+..+||||++++.|+++|+ .+|+++|| |||++|+|+..+.
T Consensus 109 ~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~-----~~p~iLlL-DEPt~gLD~~~~~ 180 (264)
T PRK13546 109 KMLC--MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINIT-----VNPDILVI-DEALSVGDQTFAQ 180 (264)
T ss_pred HHHH--cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHh-----hCCCEEEE-eCccccCCHHHHH
Confidence 1110 1112221 1223333333222 24567789999999999999999 99999999 9999999998764
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.+..+.. .+.++|++|.-. ..+ ....-.|+++..|+-+
T Consensus 181 -~l~~~L~~~~~----~g~tiIiisH~~------~~i----~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 181 -KCLDKIYEFKE----QNKTIFFVSHNL------GQV----RQFCTKIAWIEGGKLK 222 (264)
T ss_pred -HHHHHHHHHHH----CCCEEEEEcCCH------HHH----HHHcCEEEEEECCEEE
Confidence 45577777643 256777777521 122 2223357777777765
No 287
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3e-18 Score=174.88 Aligned_cols=181 Identities=18% Similarity=0.168 Sum_probs=122.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hh---cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQ---HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~---~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++ .| .+|+|.+.+.++. .++++.|..
T Consensus 18 ~~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 95 (252)
T PRK14239 18 KKALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP 95 (252)
T ss_pred eeeeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence 358999999999999 99999999999999999999985 36 4899999987641 388888875
Q ss_pred hhh-----hhcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++.......+.... ....+.++++.+... ..+..+.++|||++|++.|+++|. .+|+++
T Consensus 96 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 170 (252)
T PRK14239 96 NPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA-----TSPKII 170 (252)
T ss_pred ccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 332 222111100011111 112223333333221 135567789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|||+..+. .+.+.|..+.. +.+++++|.- ...+ ....-.|+.+..|+.+
T Consensus 171 ll-DEPt~~LD~~~~~-~l~~~l~~~~~-----~~tii~~sH~------~~~~----~~~~d~i~~l~~G~i~ 226 (252)
T PRK14239 171 LL-DEPTSALDPISAG-KIEETLLGLKD-----DYTMLLVTRS------MQQA----SRISDRTGFFLDGDLI 226 (252)
T ss_pred EE-cCCccccCHHHHH-HHHHHHHHHhh-----CCeEEEEECC------HHHH----HHhCCEEEEEECCEEE
Confidence 99 9999999999864 55577776643 2456666641 1122 2223367777777654
No 288
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.77 E-value=2.6e-18 Score=171.81 Aligned_cols=176 Identities=14% Similarity=0.012 Sum_probs=113.9
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-Ecccccceeeeeehhh---hhhhhcccceeecC
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDTFRSGAVEQLR---THARRLQVPIFEKG 477 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-I~~~Dt~RigaveQl~---~~~~~L~v~l~~~~ 477 (621)
+|++|||.+++|+ +++|+||||||||||+++|+|++.|.+|+|. +.+... .++...++. +..+++.+.. ..
T Consensus 2 vl~~vs~~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~--~~ 76 (213)
T PRK15177 2 VLDKTDFVMGYHE--HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMA--SL 76 (213)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHH--HH
Confidence 6889999999999 9999999999999999999999999999997 655332 222211111 2223332211 11
Q ss_pred CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
++.+.......+.....+.. .+..+.++||||+|++.|+++|+ .+|+++|+ |||++++|+..+.. +.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~-----~~p~llll-DEP~~~lD~~~~~~-~~~~l~~ 149 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLL-----LPCRLYIA-DGKLYTGDNATQLR-MQAALAC 149 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHh-----cCCCEEEE-CCCCccCCHHHHHH-HHHHHHH
Confidence 22223222222222222222 35677889999999999999999 99999999 99999999988653 3344433
Q ss_pred hhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 557 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
... ..+.+++|. ....+ ....-.|+.+..|+-+
T Consensus 150 ~~~-----~~~ii~vsH------~~~~~----~~~~d~i~~l~~G~i~ 182 (213)
T PRK15177 150 QLQ-----QKGLIVLTH------NPRLI----KEHCHAFGVLLHGKIT 182 (213)
T ss_pred Hhh-----CCcEEEEEC------CHHHH----HHhcCeeEEEECCeEE
Confidence 222 123455543 22222 2233367788888865
No 289
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.6e-18 Score=175.67 Aligned_cols=178 Identities=19% Similarity=0.197 Sum_probs=122.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|+++||.+.+|+ +++|+|+||+|||||++.|+|++.+. .|+|.+.+.++. .+++++|...
T Consensus 21 ~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 21 KILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eEeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 58999999999999 99999999999999999999999885 799999887641 2778887643
Q ss_pred hh-----hhcccceeecCCCC--CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 465 HA-----RRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 465 ~~-----~~L~v~l~~~~~~~--d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+. +++.......+... +....+.++++.+... ..+..+..+|||++|++.|+++|+ .+|+++|
T Consensus 99 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~-----~~p~vll 173 (261)
T PRK14258 99 LFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALA-----VKPKVLL 173 (261)
T ss_pred cCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 22 22211110001101 1122334444444321 124566789999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEec
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGC 600 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~ 600 (621)
| ||||+|+|+..+. .+.+.|..++.. .+.++|++|.- ... +....-.|+++-.
T Consensus 174 L-DEP~~~LD~~~~~-~l~~~l~~l~~~---~~~tiiivsH~------~~~----i~~~~d~i~~l~~ 226 (261)
T PRK14258 174 M-DEPCFGLDPIASM-KVESLIQSLRLR---SELTMVIVSHN------LHQ----VSRLSDFTAFFKG 226 (261)
T ss_pred E-eCCCccCCHHHHH-HHHHHHHHHHHh---CCCEEEEEECC------HHH----HHHhcCEEEEEcc
Confidence 9 9999999998864 555777766532 24567776642 222 2333346777776
No 290
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=189.99 Aligned_cols=185 Identities=19% Similarity=0.166 Sum_probs=137.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------ceeeeeehhhh---
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRT--- 464 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------~RigaveQl~~--- 464 (621)
.+.++++|||++.+|+ +++|||++||||||+.+.|+|++.|++|.|.+.+.|+ .++-.++|.+.
T Consensus 303 ~~~Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL 380 (539)
T COG1123 303 EVKAVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL 380 (539)
T ss_pred ceeeeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc
Confidence 4678999999999999 9999999999999999999999999999999999772 13666777652
Q ss_pred -----hhhhcccceeecCCC--CCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 465 -----HARRLQVPIFEKGYE--KDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 465 -----~~~~L~v~l~~~~~~--~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
..+++.-|+...... ....+.+.+.++...+.. .+..+..+|||++||++|||+|+ .+|.++++ |
T Consensus 381 nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa-----~~P~lli~-D 454 (539)
T COG1123 381 NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA-----LEPKLLIL-D 454 (539)
T ss_pred CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh-----cCCCEEEe-c
Confidence 222222233211111 112233444555544432 46788999999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||++.||+..|.+.+ +.|.++.+ ..+++.+++|. ....+-.+ .-.|+.+-.|+-|.
T Consensus 455 Ep~SaLDvsvqa~Vl-nLl~~lq~---e~g~t~lfISH------Dl~vV~~i----~drv~vm~~G~iVE 510 (539)
T COG1123 455 EPVSALDVSVQAQVL-NLLKDLQE---ELGLTYLFISH------DLAVVRYI----ADRVAVMYDGRIVE 510 (539)
T ss_pred CCccccCHHHHHHHH-HHHHHHHH---HhCCEEEEEeC------CHHHHHhh----CceEEEEECCeEEE
Confidence 999999999998666 56666654 45899999885 23344444 44888888888773
No 291
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.3e-18 Score=181.19 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=127.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. |..|+|.+.|.++. ++++++|.+
T Consensus 95 ~~~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 95 KHVLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 358999999999999 999999999999999999999885 46899999988752 489999876
Q ss_pred hhh-----hhcccceeecCCCCCHH----HHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCc
Q 007024 464 THA-----RRLQVPIFEKGYEKDPA----IVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD 529 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~d~~----~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd 529 (621)
.+. +++... ....+.... ..+..+++.+.+. ..+.....+|||++|++.|||+|. .+|+
T Consensus 173 ~~~~~ti~eNi~~~--~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~-----~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYG--PRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIA-----LEPE 245 (329)
T ss_pred ccCCCcHHHHHHhH--HHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHH-----hCCC
Confidence 432 222211 000111111 1123334433221 124567789999999999999999 9999
Q ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 530 LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 530 lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++|| ||||+++|+.... .+.+.|..+.+ ..++|++|. ....+..+ .-.|+++..|+.+
T Consensus 246 IlLL-DEPts~LD~~~~~-~i~~~i~~l~~-----~~Tii~iTH------~l~~i~~~----~Driivl~~G~i~ 303 (329)
T PRK14257 246 VLLM-DEPTSALDPIATA-KIEELILELKK-----KYSIIIVTH------SMAQAQRI----SDETVFFYQGWIE 303 (329)
T ss_pred EEEE-eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEeC------CHHHHHHh----CCEEEEEECCEEE
Confidence 9999 9999999998864 47788877753 356777764 22222222 3377888888765
No 292
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.76 E-value=2.4e-18 Score=190.83 Aligned_cols=178 Identities=18% Similarity=0.159 Sum_probs=122.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---eeeeehhhhhhhhcccceeecC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRLQVPIFEKG 477 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---igaveQl~~~~~~L~v~l~~~~ 477 (621)
.+|++++|.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+.+.+. .+...++ +..+++..... .
T Consensus 38 ~IL~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l-TV~EnL~l~~~--~ 112 (549)
T PRK13545 38 YALNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL-TGIENIELKGL--M 112 (549)
T ss_pred eEEeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC-cHHHHHHhhhh--h
Confidence 58999999999999 999999999999999999999999999999998866321 1111111 22333221110 0
Q ss_pred CCCCHH---HHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 478 YEKDPA---IVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 478 ~~~d~~---~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
.+.+.. ..+.++++.+.... .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||+..+. .+.+.
T Consensus 113 ~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~-----~~P~LLLL-DEPTsgLD~~sr~-~Llel 185 (549)
T PRK13545 113 MGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVH-----INPDILVI-DEALSVGDQTFTK-KCLDK 185 (549)
T ss_pred cCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCcccCCHHHHH-HHHHH
Confidence 111121 22334455444433 25677899999999999999999 99999999 9999999998764 55577
Q ss_pred HHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|..+... +.++|++|.- ...+. ...-.|.++..|+-+
T Consensus 186 L~el~~~----G~TIIIVSHd------l~~i~----~l~DrIivL~~GkIv 222 (549)
T PRK13545 186 MNEFKEQ----GKTIFFISHS------LSQVK----SFCTKALWLHYGQVK 222 (549)
T ss_pred HHHHHhC----CCEEEEEECC------HHHHH----HhCCEEEEEECCEEE
Confidence 7776532 5567776642 22222 223367777777654
No 293
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4e-18 Score=177.05 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=122.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEccccc----------ceeeeeehhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT----------FRSGAVEQLRT 464 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt----------~RigaveQl~~ 464 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++.| ..|+|.+.+.++ .+++++.|...
T Consensus 34 ~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 111 (276)
T PRK14271 34 KTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111 (276)
T ss_pred EEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc
Confidence 468999999999999 9999999999999999999999985 699999988654 13788888653
Q ss_pred hh-----hhcccceeecCCCCCHHH---HHHHHHHHHhhcC-----CCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 465 HA-----RRLQVPIFEKGYEKDPAI---VAKEAIQEATRNG-----SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 465 ~~-----~~L~v~l~~~~~~~d~~~---ia~~al~~~~~~~-----~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
+. +++........ ...... .+.++++.++... .+..+..+|||++|++.||++|+ .+|+++
T Consensus 112 l~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~-----~~p~ll 185 (276)
T PRK14271 112 PFPMSIMDNVLAGVRAHK-LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA-----VNPEVL 185 (276)
T ss_pred cCCccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 22 22221111000 011111 2223333333221 23446789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| ||||+|+|+..+ +.+.+.|..+.. ..++|++|. ....+..+ .-.|+.+..|+-+
T Consensus 186 lL-DEPt~~LD~~~~-~~l~~~L~~~~~-----~~tiiivsH------~~~~~~~~----~dri~~l~~G~i~ 241 (276)
T PRK14271 186 LL-DEPTSALDPTTT-EKIEEFIRSLAD-----RLTVIIVTH------NLAQAARI----SDRAALFFDGRLV 241 (276)
T ss_pred EE-cCCcccCCHHHH-HHHHHHHHHHhc-----CCEEEEEeC------CHHHHHHh----CCEEEEEECCEEE
Confidence 99 999999999886 455577777653 246677664 22222222 2367777777654
No 294
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.9e-18 Score=175.27 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=122.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc------ccc---------ceeeeeehhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA------CDT---------FRSGAVEQLR 463 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~------~Dt---------~RigaveQl~ 463 (621)
...+|++++|.+.+|+ +++|+||||+|||||++.|+|++.|+.|+|.+.| .++ .++++++|..
T Consensus 22 ~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~ 99 (257)
T PRK14246 22 DKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99 (257)
T ss_pred CceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence 3468999999999999 9999999999999999999999999886665554 443 2378888875
Q ss_pred hhhh------hcccceeecCCCCC--HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 464 THAR------RLQVPIFEKGYEKD--PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 464 ~~~~------~L~v~l~~~~~~~d--~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+.. ++.......+.... ....+.++++.+... ..+..+.++|||++|++.|+++|. .+|++
T Consensus 100 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~-----~~P~l 174 (257)
T PRK14246 100 NPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA-----LKPKV 174 (257)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH-----cCCCE
Confidence 4322 22221111111111 112234444444432 124567889999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|+ ||||+|||...+ ..+.+.+..+.. ..++|++|. ....+..++ --++.+..|+.+
T Consensus 175 lll-DEPt~~LD~~~~-~~l~~~l~~~~~-----~~tiilvsh------~~~~~~~~~----d~v~~l~~g~i~ 231 (257)
T PRK14246 175 LLM-DEPTSMIDIVNS-QAIEKLITELKN-----EIAIVIVSH------NPQQVARVA----DYVAFLYNGELV 231 (257)
T ss_pred EEE-cCCCccCCHHHH-HHHHHHHHHHhc-----CcEEEEEEC------CHHHHHHhC----CEEEEEECCEEE
Confidence 999 999999999886 456677776642 346666664 222222222 255666666543
No 295
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.76 E-value=4.5e-18 Score=174.59 Aligned_cols=177 Identities=14% Similarity=0.028 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L- 469 (621)
..+|++++|.+.+|+ +++|+|+||+|||||+++|+|++.|..|+|.+.+.++. ++++++|...+...-
T Consensus 34 ~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSI 111 (257)
T ss_pred CcceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHH
Confidence 358999999999999 99999999999999999999999999999999987652 388888876432210
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHH------hhc--CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 470 --QVPIFEKGYEKDPAIVAKEAIQEA------TRN--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 470 --~v~l~~~~~~~d~~~ia~~al~~~------~~~--~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
++... ...... ...+++... ... ++ +.....+|||++|++.|+++|+ .+|+++|| |
T Consensus 112 ~~nl~~~---~~~~~~-~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~-----~~p~llll-D 181 (257)
T cd03288 112 RFNLDPE---CKCTDD-RLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV-----RKSSILIM-D 181 (257)
T ss_pred HHhcCcC---CCCCHH-HHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-e
Confidence 11110 001111 112222211 111 22 2234678999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|||+|+|+..+ ..|.+.+..+.. +.++|++|.-.. .+ .. .-.|+++..|+-+.
T Consensus 182 EPt~gLD~~~~-~~l~~~l~~~~~-----~~tiii~sh~~~------~~----~~-~dri~~l~~G~i~~ 234 (257)
T cd03288 182 EATASIDMATE-NILQKVVMTAFA-----DRTVVTIAHRVS------TI----LD-ADLVLVLSRGILVE 234 (257)
T ss_pred CCccCCCHHHH-HHHHHHHHHhcC-----CCEEEEEecChH------HH----Hh-CCEEEEEECCEEEE
Confidence 99999999876 455566665432 456777664222 11 11 45788888888653
No 296
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.5e-18 Score=173.26 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=123.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh--h---cCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--Q---HKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~---~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||||||||++.|+|++. | +.|+|.+.+.++. +++++.|..
T Consensus 19 ~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 96 (253)
T PRK14261 19 KHALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96 (253)
T ss_pred eeeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence 358999999999999 999999999999999999999875 3 4899999886642 278888865
Q ss_pred hhh-----hhcccceeecCCCC--CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~--d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++........... .....+.++++.+... ..+..+..+|||++|++.|+++|+ .+|+++
T Consensus 97 ~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~ll 171 (253)
T PRK14261 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA-----VNPEVI 171 (253)
T ss_pred ccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh-----cCCCEE
Confidence 432 22211110001000 1112233344433221 135667789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| |||++|+|+..+. .+.+.+..+.. ..+++++|.- ...+ ....-.|+.+..|+.+
T Consensus 172 lL-DEP~~gLD~~~~~-~l~~~l~~~~~-----~~tvii~sh~------~~~~----~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 172 LM-DEPCSALDPIATA-KIEDLIEDLKK-----EYTVIIVTHN------MQQA----ARVSDYTGFMYLGKLI 227 (253)
T ss_pred EE-eCCcccCCHHHHH-HHHHHHHHHhh-----CceEEEEEcC------HHHH----HhhCCEEEEEECCEEE
Confidence 99 9999999999874 55677777653 2466776641 1122 2223367777777754
No 297
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.76 E-value=3.1e-18 Score=195.18 Aligned_cols=174 Identities=17% Similarity=0.141 Sum_probs=124.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|+||++++|+ .++|+||+||||||+++.|+|++ |+.|+|.+++.|+. .++++.|...+
T Consensus 363 ~~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI 439 (588)
T PRK11174 363 KTLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTL 439 (588)
T ss_pred CeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCH
Confidence 468999999999999 99999999999999999999999 99999999998762 49999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+|+. +... ..+.. ...++++.+.. .++|..+. .+|||++||++|||+|. .+|+++||
T Consensus 440 ~eNI~--~g~~--~~~~e-ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll-----~~~~IliL 509 (588)
T PRK11174 440 RDNVL--LGNP--DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALL-----QPCQLLLL 509 (588)
T ss_pred HHHhh--cCCC--CCCHH-HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 34432 2111 11222 22333333221 25565553 48999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|..... .+.+.+..+.+ +.+.|++|. +.-. . ..---|+.+..|+-+
T Consensus 510 -DE~TSaLD~~te~-~i~~~l~~~~~-----~~TvIiItH------rl~~----i-~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 510 -DEPTASLDAHSEQ-LVMQALNAASR-----RQTTLMVTH------QLED----L-AQWDQIWVMQDGQIV 562 (588)
T ss_pred -eCCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEec------ChHH----H-HhCCEEEEEeCCeEe
Confidence 9999999998864 44466666542 456777764 2211 1 112356677777655
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=7.4e-18 Score=164.11 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=112.2
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-c---eeeeeehhhhhhhhcccce
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F---RSGAVEQLRTHARRLQVPI 473 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-~---RigaveQl~~~~~~L~v~l 473 (621)
..+.+|+++||++.+|+ +++|+|||||||||||+.|. +..|+|.+.+... + +++++.|
T Consensus 6 ~~~~~l~~isl~i~~G~--~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNV--LVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeeecceEEEEcCCC--EEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH------------
Confidence 45678999999999999 99999999999999999884 3688888876532 1 2444444
Q ss_pred eecCCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCC--CcEEEEEeCCcCCCCHHHHHHH
Q 007024 474 FEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN--PDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 474 ~~~~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~--PdlILLVDEpt~GlD~~~q~~~ 549 (621)
.++++.+.+.. .+..+..+|||++|++.|+++|. .+ |+++|+ |||++++|+... ..
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~-----~~~~p~llLl-DEPt~~LD~~~~-~~ 127 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELF-----SEPPGTLFIL-DEPSTGLHQQDI-NQ 127 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHh-----hCCCCCEEEE-eCCcccCCHHHH-HH
Confidence 12333333322 35667889999999999999999 99 999999 999999999876 45
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|.+.+..+.+ .+.++|++|.-- .. +. ..-.|+.+..|+..
T Consensus 128 l~~~l~~~~~----~g~tvIivSH~~------~~-~~----~~d~i~~l~~g~~~ 167 (176)
T cd03238 128 LLEVIKGLID----LGNTVILIEHNL------DV-LS----SADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHh----CCCEEEEEeCCH------HH-HH----hCCEEEEECCCCCC
Confidence 5567776643 266778877522 11 12 23467778776653
No 299
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.4e-18 Score=172.35 Aligned_cols=181 Identities=18% Similarity=0.222 Sum_probs=122.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLR 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~ 463 (621)
..+|++++|++.+|+ +++|+||||+|||||++.|+|++. ++.|+|.+.+.++. +++++.|..
T Consensus 16 ~~~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 93 (250)
T PRK14266 16 AHILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93 (250)
T ss_pred eEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence 358999999999999 999999999999999999999874 37899999987642 388888865
Q ss_pred hhh-----hhcccceeecCCCC-C-HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 464 THA-----RRLQVPIFEKGYEK-D-PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 464 ~~~-----~~L~v~l~~~~~~~-d-~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
.+. +++...+....... . ....+.++++.+... ..+.....+|||++|++.|+++|+ .+|+++
T Consensus 94 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~-----~~p~ll 168 (250)
T PRK14266 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA-----VSPEVI 168 (250)
T ss_pred ccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCEE
Confidence 322 22211110001000 1 112233334333221 124556789999999999999999 999999
Q ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 532 LFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 532 LLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|| |||++|+|+..+. .+.+.|..+.. +.+++++|.- ... +....--|.++..|+-+
T Consensus 169 ll-DEP~~gLD~~~~~-~l~~~l~~~~~-----~~tiii~sh~------~~~----~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 169 LM-DEPCSALDPISTT-KIEDLIHKLKE-----DYTIVIVTHN------MQQ----ATRVSKYTSFFLNGEII 224 (250)
T ss_pred EE-cCCCccCCHHHHH-HHHHHHHHHhc-----CCeEEEEECC------HHH----HHhhcCEEEEEECCeEE
Confidence 99 9999999998864 55677777642 3566776642 222 22333456667777654
No 300
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.76 E-value=3.2e-18 Score=197.23 Aligned_cols=178 Identities=20% Similarity=0.168 Sum_probs=127.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L- 469 (621)
..+|+|+|+++++|+ .++|||+||||||||++.|+|++.|+.|+|.+++.|. ..+|+|.|...+...-
T Consensus 486 ~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSI 563 (709)
T ss_pred cchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcH
Confidence 479999999999999 9999999999999999999999999999999999987 2399999986442211
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHHh--------hcCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 470 --QVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 470 --~v~l~~~~~~~d~~~ia~~al~~~~--------~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
|+.+.... .+. +.+.+|...+. -.+|+..+. .+|||++|+++|||+|. .+|.++|| |
T Consensus 564 ~eNi~l~~p~--~~~-e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl-----~~P~ILlL-D 634 (709)
T COG2274 564 RENIALGNPE--ATD-EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL-----SKPKILLL-D 634 (709)
T ss_pred HHHHhcCCCC--CCH-HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc-----cCCCEEEE-e
Confidence 22221111 111 22223332221 134565554 47999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|||++||+......+ +.|..+.. +.|.|++|+=+.+ ....-.|+.+-.|+-+.
T Consensus 635 EaTSaLD~~sE~~I~-~~L~~~~~-----~~T~I~IaHRl~t-----------i~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 635 EATSALDPETEAIIL-QNLLQILQ-----GRTVIIIAHRLST-----------IRSADRIIVLDQGKIVE 687 (709)
T ss_pred CcccccCHhHHHHHH-HHHHHHhc-----CCeEEEEEccchH-----------hhhccEEEEccCCceec
Confidence 999999999875333 55555432 5677887764433 12233566667776653
No 301
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.1e-18 Score=179.48 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=113.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-----hcCcEEEEcccccc-----------eeeeeehhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-----QHKVSVMMAACDTF-----------RSGAVEQLRT 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-----~~~GkV~I~~~Dt~-----------RigaveQl~~ 464 (621)
.+|++++|++.+|+ +++|+||||+|||||++.|+|++. |+.|+|.+.+.++. +++++.|...
T Consensus 59 ~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 136 (305)
T PRK14264 59 HALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN 136 (305)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence 47899999999999 999999999999999999999986 58999999987642 3788888653
Q ss_pred h-----hhhcccceeec----------CCCCC----HHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHH
Q 007024 465 H-----ARRLQVPIFEK----------GYEKD----PAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALS 520 (621)
Q Consensus 465 ~-----~~~L~v~l~~~----------~~~~d----~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~ 520 (621)
+ .+++....... .+... ....+.++++.+... ..+..+..+|||++|++.|+++|+
T Consensus 137 l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~ 216 (305)
T PRK14264 137 PFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216 (305)
T ss_pred cccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence 2 22222111000 00111 112233444433221 124557789999999999999999
Q ss_pred hhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 521 KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 521 ~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+|+++|| |||++|||+..+. .+.+.|..+.. ..++|++|.
T Consensus 217 -----~~p~lLLL-DEPtsgLD~~~~~-~l~~~L~~~~~-----~~tiiivtH 257 (305)
T PRK14264 217 -----VDPEVILM-DEPASALDPIATS-KIEDLIEELAE-----EYTVVVVTH 257 (305)
T ss_pred -----cCCCEEEE-eCCcccCCHHHHH-HHHHHHHHHhc-----CCEEEEEEc
Confidence 99999999 9999999998874 55677777754 245666653
No 302
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.76 E-value=2.3e-18 Score=192.26 Aligned_cols=183 Identities=20% Similarity=0.186 Sum_probs=127.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEEccccc----------ceeeeeehhhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT----------FRSGAVEQLRTHARR 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I~~~Dt----------~RigaveQl~~~~~~ 468 (621)
..+|+++||.+.+|+ +++|+||||||||||+++|+|++.+ +.|+|.+.+.+. .++|++.|.......
T Consensus 273 ~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 350 (490)
T PRK10938 273 RPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYR 350 (490)
T ss_pred eeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcc
Confidence 358999999999999 9999999999999999999998765 689999988643 138899886432111
Q ss_pred c-----cc---ceee--cCCC-CCH--HHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 469 L-----QV---PIFE--KGYE-KDP--AIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 469 L-----~v---~l~~--~~~~-~d~--~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+ ++ .++. ..+. ... ...+.++++.+.... .+..+.++||||+|++.||++|+ .+|+++||
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~lllL 425 (490)
T PRK10938 351 VSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV-----KHPTLLIL 425 (490)
T ss_pred cCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 0 11 1111 0011 111 234455666665543 36677899999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.|..+++.+ ..++|++|. ++.+ .. ...-.+.++..|+-+
T Consensus 426 -DEPt~gLD~~~~-~~l~~~L~~l~~~~---~~tviivsHd~~~~-------~~---~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 426 -DEPLQGLDPLNR-QLVRRFVDVLISEG---ETQLLFVSHHAEDA-------PA---CITHRLEFVPDGDIY 482 (490)
T ss_pred -cCccccCCHHHH-HHHHHHHHHHHhcC---CcEEEEEecchhhh-------hh---hhheeEEEecCCceE
Confidence 999999999986 45667887776532 334566664 2222 11 123367777777754
No 303
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.76 E-value=5.1e-19 Score=220.50 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=122.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhcc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L~- 470 (621)
..+|++|+|.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.|.++. ++|++.|...+...+.
T Consensus 1952 ~~aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 458999999999999 99999999999999999999999999999999998762 3899999764443331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.++...++... ...+.++++.+++..+ +..+..+||||+|++.+|++|+ .+|+++|| ||||+|+|+
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi-----~~P~VLLL-DEPTsGLDp 2103 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI-----GCPPLVLL-DEPTTGMDP 2103 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCH
Confidence 112211122111 2334445555544333 6677899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+ +.+.+.+..+.+. +.++|+.|.
T Consensus 2104 ~sr-~~l~~lL~~l~~~----g~TIILtTH 2128 (2272)
T TIGR01257 2104 QAR-RMLWNTIVSIIRE----GRAVVLTSH 2128 (2272)
T ss_pred HHH-HHHHHHHHHHHhC----CCEEEEEeC
Confidence 987 4555777777543 455666655
No 304
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.8e-18 Score=191.56 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=125.2
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L 469 (621)
...+|+|+||++++|+ ++|||||+|+||||.++.|-.+|.|++|+|+++|.|+ ..||.|.|.+.+...-
T Consensus 480 ~~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~s 557 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGS 557 (716)
T ss_pred CchhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeeccc
Confidence 4679999999999999 9999999999999999999999999999999999998 2499999988553321
Q ss_pred ---ccceeecCCCCCHHHHHHHHHHHHh--------hcCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 470 ---QVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 470 ---~v~l~~~~~~~d~~~ia~~al~~~~--------~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
||.+- .. ..+..+ +..+.+.+. ..+|+..+. .+|||++||.+|||||. .+|.++||
T Consensus 558 I~eNI~YG-~~-~~t~e~-i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl-----r~P~VLIL- 628 (716)
T KOG0058|consen 558 IRENIAYG-LD-NATDEE-IEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL-----RNPRVLIL- 628 (716)
T ss_pred HHHHHhcC-CC-CCCHHH-HHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh-----cCCCEEEE-
Confidence 22111 00 111211 122222211 135665553 57999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec-cccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT-K~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+|++||+.+. ...+++|..+.+. .|++++. .+-++ +.---|+++..|..+
T Consensus 629 DEATSALDaeSE-~lVq~aL~~~~~~-----rTVlvIAHRLSTV------------~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 629 DEATSALDAESE-YLVQEALDRLMQG-----RTVLVIAHRLSTV------------RHADQIVVIDKGRVV 681 (716)
T ss_pred echhhhcchhhH-HHHHHHHHHhhcC-----CeEEEEehhhhHh------------hhccEEEEEcCCeEE
Confidence 999999999875 4566777665542 4455433 33322 112267777777654
No 305
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=5.8e-18 Score=174.45 Aligned_cols=180 Identities=16% Similarity=0.222 Sum_probs=122.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-----cCcEEEEccccc-------------ceeeeeehh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-----HKVSVMMAACDT-------------FRSGAVEQL 462 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-----~~GkV~I~~~Dt-------------~RigaveQl 462 (621)
.+|++++|++.+|+ +++|+|+||+|||||++.|+|++.| ++|+|.+.+.+. .++|++.|.
T Consensus 30 ~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 30 QALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred eeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 58999999999999 9999999999999999999999875 689999976432 137888886
Q ss_pred hh-----hhhhcccceeecCCCC--CHHHHHHHHHHHHhhc-----CCCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 463 RT-----HARRLQVPIFEKGYEK--DPAIVAKEAIQEATRN-----GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 463 ~~-----~~~~L~v~l~~~~~~~--d~~~ia~~al~~~~~~-----~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.. ..+++...+...+... .....+.++++.+... ..+.....+|||++|++.|+++|. .+|++
T Consensus 108 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~-----~~p~l 182 (265)
T PRK14252 108 PNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA-----TDPEI 182 (265)
T ss_pred CcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH-----cCCCE
Confidence 42 2233322111001111 1112333444443321 124556789999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|| ||||+|+|+..+ ..|.+.|..+.. ..+++++|. | .- .+....-.|+.+..|+.+
T Consensus 183 lll-DEPt~gLD~~~~-~~l~~~l~~l~~-----~~tiiivth-~-----~~----~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 183 LLF-DEPTSALDPIAT-ASIEELISDLKN-----KVTILIVTH-N-----MQ----QAARVSDYTAYMYMGELI 239 (265)
T ss_pred EEE-eCCCccCCHHHH-HHHHHHHHHHHh-----CCEEEEEec-C-----HH----HHHHhCCEEEEEECCEEE
Confidence 999 999999999886 456677777753 346666664 1 11 122333467777777754
No 306
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=4.9e-18 Score=176.49 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=121.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|+++||.+.+|+ +++|+|+||+|||||++.|+|++. ..|+|.+.+.++. ++++++|...+.
T Consensus 17 ~~~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv 93 (275)
T cd03289 17 NAVLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTF 93 (275)
T ss_pred CcceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhH
Confidence 348999999999999 999999999999999999999997 7899999998752 489999876433
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhcCC-Ccccc-----------ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLV-----------DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vli-----------DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++. .+. . ... ..+.++++.+++..+ +..+. .+||||+|++.|+|+|. .+|+++||
T Consensus 94 ~~nl~--~~~-~--~~~-~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall-----~~p~illl 162 (275)
T cd03289 94 RKNLD--PYG-K--WSD-EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKAKILLL 162 (275)
T ss_pred HHHhh--hcc-C--CCH-HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 2221 111 0 112 223333433322211 11111 28999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+... ..+.+.|..+. .+.++|++|. +...+ .. .-.|+.+..|+-+
T Consensus 163 -DEpts~LD~~~~-~~l~~~l~~~~-----~~~tii~isH------~~~~i----~~-~dri~vl~~G~i~ 215 (275)
T cd03289 163 -DEPSAHLDPITY-QVIRKTLKQAF-----ADCTVILSEH------RIEAM----LE-CQRFLVIEENKVR 215 (275)
T ss_pred -ECccccCCHHHH-HHHHHHHHHhc-----CCCEEEEEEC------CHHHH----Hh-CCEEEEecCCeEe
Confidence 999999999876 45666666542 1466677664 22121 12 4577788778775
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=5e-18 Score=192.55 Aligned_cols=176 Identities=20% Similarity=0.152 Sum_probs=121.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh------hcccce
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR------RLQVPI 473 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~------~L~v~l 473 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+... .++|+++|...+.. ++...+
T Consensus 20 ~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~l~~~~ 95 (556)
T PRK11819 20 KQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQLDPEKTVRENVEEGV 95 (556)
T ss_pred CeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCCCCcHHHHHHHhh
Confidence 458999999999999 99999999999999999999999999999998642 47999999753322 221111
Q ss_pred ee---------c---CCC-C------------------------CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHH
Q 007024 474 FE---------K---GYE-K------------------------DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516 (621)
Q Consensus 474 ~~---------~---~~~-~------------------------d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~La 516 (621)
.. . .+. . +....+.++++.++....+..+.++||||+|++.||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la 175 (556)
T PRK11819 96 AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALC 175 (556)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHH
Confidence 00 0 000 0 001122333343333334667789999999999999
Q ss_pred HHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 517 raL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
++|. .+|+++|| ||||++||+..+. .+.+.|..+. .++|++|. | ...+. ...-.|+
T Consensus 176 ~al~-----~~p~vlLL-DEPt~~LD~~~~~-~l~~~L~~~~-------~tviiisH-d-----~~~~~----~~~d~i~ 231 (556)
T PRK11819 176 RLLL-----EKPDMLLL-DEPTNHLDAESVA-WLEQFLHDYP-------GTVVAVTH-D-----RYFLD----NVAGWIL 231 (556)
T ss_pred HHHh-----CCCCEEEE-cCCCCcCChHHHH-HHHHHHHhCC-------CeEEEEeC-C-----HHHHH----hhcCeEE
Confidence 9999 99999999 9999999999864 4445665441 35666664 2 22222 2233677
Q ss_pred EEecCCC
Q 007024 597 FVGCGQS 603 (621)
Q Consensus 597 fvg~Gq~ 603 (621)
++..|+-
T Consensus 232 ~l~~g~i 238 (556)
T PRK11819 232 ELDRGRG 238 (556)
T ss_pred EEeCCEE
Confidence 7777764
No 308
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=8.1e-18 Score=175.42 Aligned_cols=171 Identities=17% Similarity=0.188 Sum_probs=116.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh-----hccccee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-----RLQVPIF 474 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~-----~L~v~l~ 474 (621)
..+|++++|.+.+|+ +++|+||||||||||+++|+|++.|..|+|.+.+ +++++.|...+.. ++....
T Consensus 50 ~~vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~~l~~~tv~enl~~~~- 122 (282)
T cd03291 50 APVLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFSWIMPGTIKENIIFGV- 122 (282)
T ss_pred ccceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCcccccccCHHHHhhccc-
Confidence 358999999999999 9999999999999999999999999999999877 6889988764322 221110
Q ss_pred ecCCCCCHHHHHHHHHHHHhh------c--CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 475 EKGYEKDPAIVAKEAIQEATR------N--GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~------~--~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
.+ ... ...+++..+.. . .. +.....+|||++|++.|+++|. .+|+++|| ||||+|||
T Consensus 123 --~~--~~~-~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~iLiL-DEPt~gLD 191 (282)
T cd03291 123 --SY--DEY-RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLD 191 (282)
T ss_pred --cc--CHH-HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCccCC
Confidence 01 111 11111111110 0 01 1123578999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+...+..++..+.. +.+++++|.--. .+ .. .-.|.++..|+.+
T Consensus 192 ~~~~~~l~~~ll~~~~~-----~~tIiiisH~~~------~~-~~----~d~i~~l~~G~i~ 237 (282)
T cd03291 192 VFTEKEIFESCVCKLMA-----NKTRILVTSKME------HL-KK----ADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHHHHhhC-----CCEEEEEeCChH------HH-Hh----CCEEEEEECCEEE
Confidence 98764333223344432 456677664211 11 21 3368888888754
No 309
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.75 E-value=4.8e-18 Score=200.12 Aligned_cols=178 Identities=24% Similarity=0.316 Sum_probs=130.1
Q ss_pred CCC-ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh
Q 007024 396 PRR-SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH 465 (621)
Q Consensus 396 p~~-~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~ 465 (621)
|.+ .+.+|+++||.+++|+ .++||||+||||||++..|++++.|+.|+|+|+|.|+. ++|.|.|.+.+
T Consensus 361 PsRpdv~Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 444 4789999999999999 99999999999999999999999999999999999983 49999998744
Q ss_pred -----hhhcccceeecCCCC-CH-HHHHHHHHHHH--------hhcCCCcccc----ccchhHHhHHHHHHHHHhhhhcC
Q 007024 466 -----ARRLQVPIFEKGYEK-DP-AIVAKEAIQEA--------TRNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 466 -----~~~L~v~l~~~~~~~-d~-~~ia~~al~~~--------~~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~ 526 (621)
.+++. |+. ++ .....++.+.+ ...+++..+. .+||||+||++|||+|. .
T Consensus 439 F~~tI~eNI~-------~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv-----~ 506 (1228)
T KOG0055|consen 439 FATTIRENIR-------YGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV-----R 506 (1228)
T ss_pred hcccHHHHHh-------cCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH-----h
Confidence 33321 122 11 11122222211 1124454433 37999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+|+++|| ||||++||+.+. +..+++|...+. +.|.|++++ +.-.+-+ -=-|+++-+|+-+.
T Consensus 507 ~P~ILLL-DEaTSaLD~~se-~~Vq~ALd~~~~-----grTTivVaH------RLStIrn-----aD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 507 NPKILLL-DEATSALDAESE-RVVQEALDKASK-----GRTTIVVAH------RLSTIRN-----ADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCEEEe-cCcccccCHHHH-HHHHHHHHHhhc-----CCeEEEEee------ehhhhhc-----cCEEEEEECCEEEE
Confidence 9999999 999999999985 566677776654 445666553 3333333 23688888888774
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=7.9e-18 Score=189.77 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=125.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhh--hhhhcc----cce
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQ----VPI 473 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~--~~~~L~----v~l 473 (621)
..+|++++|++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+.+. .++|++.|... +...+. +.+
T Consensus 332 ~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~~~t~~~~~~~ 407 (530)
T PRK15064 332 GPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAYDFENDLTLFDWMSQ 407 (530)
T ss_pred ceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccccCCCCCcHHHHHHH
Confidence 358999999999999 99999999999999999999999999999998764 46899998642 222121 111
Q ss_pred eecCCCCCHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 474 FEKGYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 474 ~~~~~~~d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
+. . .......+.++++.+... ..+..+..+||||+|++.|+++|+ .+|+++|| ||||+|||+..+. .+.
T Consensus 408 ~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~~-~l~ 478 (530)
T PRK15064 408 WR-Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM-----QKPNVLVM-DEPTNHMDMESIE-SLN 478 (530)
T ss_pred hc-c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-HHH
Confidence 11 0 111223345556555442 236678899999999999999999 99999999 9999999999864 444
Q ss_pred HHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+.+..+ ..++|++|.- ... +....-.|+++..|+-+
T Consensus 479 ~~l~~~-------~~tvi~vsHd------~~~----~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 479 MALEKY-------EGTLIFVSHD------REF----VSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHC-------CCEEEEEeCC------HHH----HHHhCCEEEEEECCeEE
Confidence 555543 2366776642 222 23334477888888754
No 311
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.75 E-value=3.7e-18 Score=157.57 Aligned_cols=123 Identities=28% Similarity=0.290 Sum_probs=97.8
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhcccce
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQVPI 473 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~v~l 473 (621)
|++|++.+.+|+ +++|+|+||+||||+++.|+|.+.+..|.|.+.+.++. +++++.|...+...+.+.-
T Consensus 1 L~~v~~~i~~g~--~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGE--IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTS--EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCC--EEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999 99999999999999999999999999999999987762 3788888765555443211
Q ss_pred eecCCCCCHHHHHHHHHHHHhhcCC-Cccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 474 FEKGYEKDPAIVAKEAIQEATRNGS-DVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 474 ~~~~~~~d~~~ia~~al~~~~~~~~-d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
. .....+.++++.+...++ +..+ ..+|||+++++.|+++|. .+|+++|| ||||+
T Consensus 79 ~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~-----~~~~llll-DEPt~ 137 (137)
T PF00005_consen 79 N------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALL-----KNPKLLLL-DEPTN 137 (137)
T ss_dssp H------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHH-----TTSSEEEE-ESTTT
T ss_pred c------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHH-----cCCCEEEE-eCCCC
Confidence 1 122345556666555442 3444 899999999999999999 99999999 99985
No 312
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=188.85 Aligned_cols=176 Identities=16% Similarity=0.078 Sum_probs=121.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh------hcccce
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR------RLQVPI 473 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~------~L~v~l 473 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+. .++|++.|...... ++..+.
T Consensus 14 ~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~~~~tv~e~l~~~~ 89 (530)
T PRK15064 14 KPLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAFEEFTVLDTVIMGH 89 (530)
T ss_pred cEeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcCCCCcHHHHHHHhh
Confidence 358999999999999 99999999999999999999999999999998763 36889888642221 111100
Q ss_pred ---e----------e-c-------------------CCCCCHHHHHHHHHHHHhhcCC--CccccccchhHHhHHHHHHH
Q 007024 474 ---F----------E-K-------------------GYEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRA 518 (621)
Q Consensus 474 ---~----------~-~-------------------~~~~d~~~ia~~al~~~~~~~~--d~vliDtSGg~qqr~~Lara 518 (621)
+ . . ..+.+....+.++++.++.... +..+.++||||+|++.||++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~a 169 (530)
T PRK15064 90 TELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169 (530)
T ss_pred HHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHH
Confidence 0 0 0 0000111223344444444321 34567899999999999999
Q ss_pred HHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEE
Q 007024 519 LSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFV 598 (621)
Q Consensus 519 L~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fv 598 (621)
|+ .+|+++|| ||||++||+..+. .+.+.|. + .+.++|++|. | ...+. ...-.|+++
T Consensus 170 L~-----~~p~lLlL-DEPt~~LD~~~~~-~l~~~l~---~----~~~tiiivsH-d-----~~~~~----~~~d~i~~l 225 (530)
T PRK15064 170 LF-----SNPDILLL-DEPTNNLDINTIR-WLEDVLN---E----RNSTMIIISH-D-----RHFLN----SVCTHMADL 225 (530)
T ss_pred Hh-----cCCCEEEE-cCCCcccCHHHHH-HHHHHHH---h----CCCeEEEEeC-C-----HHHHH----hhcceEEEE
Confidence 99 99999999 9999999999874 4444443 1 2567777774 2 22222 233367888
Q ss_pred ecCCC
Q 007024 599 GCGQS 603 (621)
Q Consensus 599 g~Gq~ 603 (621)
-.|+-
T Consensus 226 ~~g~i 230 (530)
T PRK15064 226 DYGEL 230 (530)
T ss_pred eCCEE
Confidence 88875
No 313
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=9.5e-18 Score=193.07 Aligned_cols=156 Identities=19% Similarity=0.069 Sum_probs=110.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh-----hhhhhc-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THARRL----- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~-----~~~~~L----- 469 (621)
..+|++|||.+.+|+ +++|||||||||||||++|+|.+.|++|+|.+.+.. ++|++.|.. +....+
T Consensus 14 ~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--~i~~~~q~~~~~~~~~~~~v~~~~~ 89 (638)
T PRK10636 14 RVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--QLAWVNQETPALPQPALEYVIDGDR 89 (638)
T ss_pred ceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC--EEEEEecCCCCCCCCHHHHHHHhhH
Confidence 458999999999999 999999999999999999999999999999997743 567776631 100000
Q ss_pred -----ccc-----------eee---c----CCCCCHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhh
Q 007024 470 -----QVP-----------IFE---K----GYEKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIY 524 (621)
Q Consensus 470 -----~v~-----------l~~---~----~~~~d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~ 524 (621)
... .+. . ..+.+....+..++..++.. ..+..+.++|||+++|+.||++|+
T Consensus 90 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~---- 165 (638)
T PRK10636 90 EYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI---- 165 (638)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc----
Confidence 000 000 0 00011123344455555543 236677889999999999999999
Q ss_pred cCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 525 LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 525 ~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+|+++|| ||||++||+..+ ..+.+.|..+ +.++|++|.
T Consensus 166 -~~P~lLLL-DEPtn~LD~~~~-~~L~~~L~~~-------~~tviivsH 204 (638)
T PRK10636 166 -CRSDLLLL-DEPTNHLDLDAV-IWLEKWLKSY-------QGTLILISH 204 (638)
T ss_pred -cCCCEEEE-cCCCCcCCHHHH-HHHHHHHHhC-------CCeEEEEeC
Confidence 99999999 999999999876 4455555443 345666664
No 314
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.74 E-value=7.9e-18 Score=189.50 Aligned_cols=155 Identities=22% Similarity=0.224 Sum_probs=115.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+++++++++|+ .++|+||||+||||+++.|+|++.|++|+|.+++.|+. ++|++.|...+
T Consensus 335 ~~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI 412 (529)
T ss_pred cccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCH
Confidence 358999999999999 99999999999999999999999999999999998762 38999998633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++... ... .+. +...++++.+.. .++|..+ ..+|||++||..+||+|. .+|+++||
T Consensus 413 ~~Ni~~~--~~~--~~~-~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~-----~~~~ilil 482 (529)
T TIGR02857 413 AENIRLA--RPD--ASD-AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL-----RDAPLLLL 482 (529)
T ss_pred HHHHhcc--CCC--CCH-HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 3333221 111 112 222334433322 2345444 458999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+++|+.... .+.+.+..+. .+.+.|++|.
T Consensus 483 -DE~ts~lD~~~~~-~i~~~l~~~~-----~~~t~i~itH 515 (529)
T TIGR02857 483 -DEPTAHLDAETEA-LVTEALRALA-----QGRTVLLVTH 515 (529)
T ss_pred -eCcccccCHHHHH-HHHHHHHHhc-----CCCEEEEEec
Confidence 9999999999875 4446665553 2467777775
No 315
>PRK13409 putative ATPase RIL; Provisional
Probab=99.74 E-value=6.2e-18 Score=192.65 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=115.3
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc----ceeecC
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PIFEKG 477 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v----~l~~~~ 477 (621)
.|+++++++.+|+ +++|+||||+|||||++.|+|+++|+.|+|.+. .++|++.|.......+.+ .+....
T Consensus 354 ~l~~~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~ 427 (590)
T PRK13409 354 SLEVEGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIKPDYDGTVEDLLRSITDD 427 (590)
T ss_pred EEEecceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecccccCCCCCcHHHHHHHHhhh
Confidence 3788899999999 999999999999999999999999999999885 378999986532222211 110011
Q ss_pred CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
+. ....+.++++.+.... .+..+.++|||++|++.||++|+ .+|+++|| ||||+|||+..+. .+.+.|+.
T Consensus 428 ~~--~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~-----~~p~llLL-DEPt~~LD~~~~~-~l~~~l~~ 498 (590)
T PRK13409 428 LG--SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLS-----RDADLYLL-DEPSAHLDVEQRL-AVAKAIRR 498 (590)
T ss_pred cC--hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCccCCCHHHHH-HHHHHHHH
Confidence 11 1223445565554433 36778899999999999999999 99999999 9999999998764 55577877
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
++.. .+.+++++|.
T Consensus 499 l~~~---~g~tviivsH 512 (590)
T PRK13409 499 IAEE---REATALVVDH 512 (590)
T ss_pred HHHh---CCCEEEEEeC
Confidence 7643 2566777775
No 316
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.74 E-value=8.7e-18 Score=195.60 Aligned_cols=174 Identities=18% Similarity=0.204 Sum_probs=125.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|+||++++|+ .++|+|+||||||||++.|+|++.|++|+|.++|.|+. ++|++.|...+
T Consensus 492 ~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 492 PPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred CCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 468999999999999 99999999999999999999999999999999998862 49999998743
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +... ..+.. ...++++.+.. .+++..+. .+|||++||+.|||+|. .+|+++||
T Consensus 570 ~eNi~--l~~~--~~~~~-~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall-----~~p~iliL 639 (710)
T TIGR03796 570 RDNLT--LWDP--TIPDA-DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV-----RNPSILIL 639 (710)
T ss_pred HHHhh--CCCC--CCCHH-HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 33332 2111 11222 22334433221 24555553 48999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||++||..... .+.+.+.. .+.+.|++|+= ... +.. -=.|+.+..|+-+.
T Consensus 640 -DEptS~LD~~te~-~i~~~l~~-------~~~T~IiitHr------l~~----i~~-~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 640 -DEATSALDPETEK-IIDDNLRR-------RGCTCIIVAHR------LST----IRD-CDEIIVLERGKVVQ 691 (710)
T ss_pred -ECccccCCHHHHH-HHHHHHHh-------cCCEEEEEecC------HHH----HHh-CCEEEEEeCCEEEE
Confidence 9999999998864 33344432 25677777752 211 211 23677788887763
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.74 E-value=1.2e-17 Score=208.48 Aligned_cols=160 Identities=17% Similarity=0.187 Sum_probs=121.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L-- 469 (621)
..+|++++|.+.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.|+. ++|++.|...+...+
T Consensus 943 k~aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 943 RPAVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred ceEEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence 458999999999999 99999999999999999999999999999999998762 389999875443333
Q ss_pred --ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 470 --QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 470 --~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
++.++...++... ...+.++++.+++.+. +..+..+||||+|++.||++|+ .+|+++|| ||||+|+|+
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi-----~~PkVLLL-DEPTSGLDp 1094 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV-----GDAKVVVL-DEPTSGVDP 1094 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcCCCH
Confidence 1222211122211 2234455555554433 6677899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+. .+.+.|.++.+ +.++|++|.
T Consensus 1095 ~sr~-~l~~lL~~l~~-----g~TIIltTH 1118 (2272)
T TIGR01257 1095 YSRR-SIWDLLLKYRS-----GRTIIMSTH 1118 (2272)
T ss_pred HHHH-HHHHHHHHHhC-----CCEEEEEEC
Confidence 9874 55577777632 456666665
No 318
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.74 E-value=9.8e-18 Score=194.51 Aligned_cols=174 Identities=24% Similarity=0.217 Sum_probs=125.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh----
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~---- 465 (621)
...+|+|+||++++|+ .++|+|+|||||||+++.|+|++.|++|+|.++|.|+. ++|++.|...+
T Consensus 465 ~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gT 542 (686)
T TIGR03797 465 GPLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGS 542 (686)
T ss_pred CccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCccc
Confidence 3468999999999999 99999999999999999999999999999999998862 49999998744
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 466 -~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+++.. ... .+.. ...++++.+.. .++|..+ ..+|||++||+.|||+|. .+|+++|
T Consensus 543 I~eNi~~--~~~---~~~e-~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll-----~~p~iLi 611 (686)
T TIGR03797 543 IFENIAG--GAP---LTLD-EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV-----RKPRILL 611 (686)
T ss_pred HHHHHhc--CCC---CCHH-HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 444322 111 1222 22344443221 2445544 347999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
| ||||+++|+.... .+.+.+..+ +.+.|++|.= ... .. .-=.|+.+..|+-+.
T Consensus 612 L-DEpTS~LD~~te~-~i~~~L~~~-------~~T~IiItHr------~~~----i~-~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 612 F-DEATSALDNRTQA-IVSESLERL-------KVTRIVIAHR------LST----IR-NADRIYVLDAGRVVQ 664 (686)
T ss_pred E-eCCccCCCHHHHH-HHHHHHHHh-------CCeEEEEecC------hHH----HH-cCCEEEEEECCEEEE
Confidence 9 9999999998864 444555443 2466777652 211 11 123567777777663
No 319
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=8.6e-18 Score=170.52 Aligned_cols=176 Identities=17% Similarity=0.121 Sum_probs=125.8
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------------ceeeeeehhhhhhhhccc
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------------FRSGAVEQLRTHARRLQV 471 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------------~RigaveQl~~~~~~L~v 471 (621)
+++|..+... +++|.|++|+||||++++|+|+++|+.|.|.+++.-. .|+|||+|...++..+.|
T Consensus 16 ~a~~~~p~~G--vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARG--ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCc--eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 4566654423 9999999999999999999999999999999987532 479999998877766643
Q ss_pred ceeecCCCCCH--HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 472 PIFEKGYEKDP--AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 472 ~l~~~~~~~d~--~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
.-. ..|+... ......++..++.... +..+..+|||++||++|.|||. ..|+++|| |||++.||.....+
T Consensus 94 rgN-L~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL-----t~P~LLLm-DEPLaSLD~~RK~E 166 (352)
T COG4148 94 RGN-LRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL-----TAPELLLM-DEPLASLDLPRKRE 166 (352)
T ss_pred ecc-hhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh-----cCCCeeee-cCchhhcccchhhH
Confidence 110 0122111 1223345555554443 7888999999999999999999 99999999 99999999876643
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+ -.+..+.+. ..|-++.+|. ++-.++.++. .|+.+.+|+-
T Consensus 167 il-pylERL~~e---~~IPIlYVSH------S~~Ev~RLAd----~vV~le~GkV 207 (352)
T COG4148 167 IL-PYLERLRDE---INIPILYVSH------SLDEVLRLAD----RVVVLENGKV 207 (352)
T ss_pred HH-HHHHHHHHh---cCCCEEEEec------CHHHHHhhhh----eEEEecCCeE
Confidence 33 555555543 4666777764 3444455555 6777777764
No 320
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=192.74 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhh--hhhhccc-ceeec
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT--HARRLQV-PIFEK 476 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~--~~~~L~v-~l~~~ 476 (621)
..+|++++|.+.+|+ +++|+|||||||||||++|+|++.|++|+|.+... .++|++.|... +.....+ .....
T Consensus 325 ~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~~~l~~~~~~~~~~~~ 400 (638)
T PRK10636 325 RIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQLEFLRADESPLQHLAR 400 (638)
T ss_pred eeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcchhhCCccchHHHHHHH
Confidence 458999999999999 99999999999999999999999999999998642 47999999531 1111111 00000
Q ss_pred CCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 477 GYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
.........+..++..+.... .+..+..+|||+++++.|+++|. .+|+++|| ||||+|||+..+ ..+.++|
T Consensus 401 ~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~-----~~p~lLlL-DEPt~~LD~~~~-~~l~~~L 473 (638)
T PRK10636 401 LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW-----QRPNLLLL-DEPTNHLDLDMR-QALTEAL 473 (638)
T ss_pred hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHH-HHHHHHH
Confidence 011112233445555554432 35667889999999999999999 99999999 999999999986 4555666
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
..+ ..++|++|. | ...+ ....-.|+++..|+-
T Consensus 474 ~~~-------~gtvi~vSH-d-----~~~~----~~~~d~i~~l~~G~i 505 (638)
T PRK10636 474 IDF-------EGALVVVSH-D-----RHLL----RSTTDDLYLVHDGKV 505 (638)
T ss_pred HHc-------CCeEEEEeC-C-----HHHH----HHhCCEEEEEECCEE
Confidence 554 126677664 2 1122 222335666666664
No 321
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=190.20 Aligned_cols=176 Identities=19% Similarity=0.217 Sum_probs=126.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhh-----h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRT-----H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~-----~ 465 (621)
..+|+++++++++|+ .++|+|+||+|||||++.|+|++.|++|+|.++|.|+ -++++++|... .
T Consensus 356 ~~il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti 433 (582)
T PRK11176 356 VPALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433 (582)
T ss_pred CccccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchH
Confidence 468999999999999 9999999999999999999999999999999999875 24899999863 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHh--------hcCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~--------~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.... ....+..+ ..++++.+. ..++|..+. .+|||++||..|||+|. .+|+++||
T Consensus 434 ~~Ni~~~~---~~~~~~~~-i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall-----~~~~ilil 504 (582)
T PRK11176 434 ANNIAYAR---TEQYSREQ-IEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL-----RDSPILIL 504 (582)
T ss_pred HHHHhcCC---CCCCCHHH-HHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 44432211 00112222 233333322 123455553 47999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+.+..+.+ ..+.|++|.=-. .+. .--.|+.+..|+-+
T Consensus 505 -DEptsaLD~~t~~-~i~~~l~~~~~-----~~tvI~VtHr~~-------~~~----~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 505 -DEATSALDTESER-AIQAALDELQK-----NRTSLVIAHRLS-------TIE----KADEILVVEDGEIV 557 (582)
T ss_pred -ECccccCCHHHHH-HHHHHHHHHhC-----CCEEEEEecchH-------HHH----hCCEEEEEECCEEE
Confidence 9999999999865 44466665532 467788775211 111 23367778888765
No 322
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=1.4e-17 Score=169.80 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=115.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCC
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~ 478 (621)
.+.++++|||++.+|+ +++|||.+||||||+-+.|.+++.|++|+|.+.|.|.....
T Consensus 25 ~v~avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--------------------- 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--------------------- 81 (268)
T ss_pred ceEEecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---------------------
Confidence 3678999999999999 99999999999999999999999999999999999864332
Q ss_pred CCCHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 479 EKDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 479 ~~d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
.....+.+.+.++.++.. .+......+|||++||+.|||+|+ .+|+++++ |||++.||...|++.+ .+|.+
T Consensus 82 ~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa-----l~P~liV~-DEpvSaLDvSiqaqIl-nLL~d 154 (268)
T COG4608 82 KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA-----LNPKLIVA-DEPVSALDVSVQAQIL-NLLKD 154 (268)
T ss_pred hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh-----hCCcEEEe-cCchhhcchhHHHHHH-HHHHH
Confidence 111223344445444332 235778899999999999999999 99999999 9999999999887666 56666
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
+.. ..+++.+++|.
T Consensus 155 lq~---~~~lt~lFIsH 168 (268)
T COG4608 155 LQE---ELGLTYLFISH 168 (268)
T ss_pred HHH---HhCCeEEEEEE
Confidence 654 35888888885
No 323
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=1.5e-17 Score=188.60 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=120.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh-hhhhhc------ccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-THARRL------QVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~-~~~~~L------~v~ 472 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|+.|+|.+ +.+ .++|++.|.. .+...+ ...
T Consensus 337 ~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~~ 412 (556)
T PRK11819 337 RLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISGG 412 (556)
T ss_pred eeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CCc-eEEEEEeCchhhcCCCCCHHHHHHhh
Confidence 358999999999999 99999999999999999999999999999998 333 4899999964 222222 111
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
......... ...+..+++.+.... .+..+..+|||++|++.|+++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 413 ~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~~-~l 484 (556)
T PRK11819 413 LDIIKVGNR-EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK-----QGGNVLLL-DEPTNDLDVETLR-AL 484 (556)
T ss_pred ccccccccc-HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-HH
Confidence 110111111 122334555555432 35677899999999999999999 99999999 9999999999873 44
Q ss_pred HHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEec
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGC 600 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~ 600 (621)
.+.|..+. + ++|++|. .... +....-.|+++..
T Consensus 485 ~~~l~~~~------~-tvi~vtH------d~~~----~~~~~d~i~~l~~ 517 (556)
T PRK11819 485 EEALLEFP------G-CAVVISH------DRWF----LDRIATHILAFEG 517 (556)
T ss_pred HHHHHhCC------C-eEEEEEC------CHHH----HHHhCCEEEEEEC
Confidence 45665441 2 4566664 2222 2233336777765
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.74 E-value=1.7e-17 Score=188.12 Aligned_cols=176 Identities=19% Similarity=0.134 Sum_probs=120.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhh------cccce
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARR------LQVPI 473 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~------L~v~l 473 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+. .++|++.|...+... +...+
T Consensus 18 ~~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~~~~~tv~e~i~~~~ 93 (552)
T TIGR03719 18 KEILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQLDPTKTVRENVEEGV 93 (552)
T ss_pred CeeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCCCCCCcHHHHHHHhh
Confidence 358999999999999 99999999999999999999999999999998642 469999997543322 21111
Q ss_pred ee-c-------------CCCCCH-----------------------HHHHHHHHHHHhhcCCCccccccchhHHhHHHHH
Q 007024 474 FE-K-------------GYEKDP-----------------------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLM 516 (621)
Q Consensus 474 ~~-~-------------~~~~d~-----------------------~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~La 516 (621)
.. . ...... ...+.+++..++....+..+.++||||++++.|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la 173 (552)
T TIGR03719 94 AEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALC 173 (552)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHH
Confidence 00 0 000010 0111222333222223566788999999999999
Q ss_pred HHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 517 RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 517 raL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
++|+ .+|+++|| ||||++||+..+. .+.+.|..+ ..++|++|. | ...+.. ..-.|+
T Consensus 174 ~al~-----~~p~lLLL-DEPt~~LD~~~~~-~l~~~L~~~-------~~tvIiisH-d-----~~~~~~----~~d~v~ 229 (552)
T TIGR03719 174 RLLL-----SKPDMLLL-DEPTNHLDAESVA-WLEQHLQEY-------PGTVVAVTH-D-----RYFLDN----VAGWIL 229 (552)
T ss_pred HHHh-----cCCCEEEE-cCCCCCCChHHHH-HHHHHHHhC-------CCeEEEEeC-C-----HHHHHh----hcCeEE
Confidence 9999 99999999 9999999999864 444555443 135666664 2 222222 233677
Q ss_pred EEecCCC
Q 007024 597 FVGCGQS 603 (621)
Q Consensus 597 fvg~Gq~ 603 (621)
++..|+-
T Consensus 230 ~l~~g~i 236 (552)
T TIGR03719 230 ELDRGRG 236 (552)
T ss_pred EEECCEE
Confidence 7777764
No 325
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.73 E-value=1.5e-17 Score=193.30 Aligned_cols=188 Identities=20% Similarity=0.199 Sum_probs=132.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++++|++++|+ .++|+|+|||||||+++.|+|++.|++|+|.+++.|+. .+|++.|...+
T Consensus 478 ~~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI 555 (694)
T TIGR03375 478 TPALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTL 555 (694)
T ss_pred ccceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhH
Confidence 458999999999999 99999999999999999999999999999999998762 48999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.. ... ..+..+ ..++++.+.. .++|..+ ..+|||++||..|||+|. .+|+++||
T Consensus 556 ~eNi~~--~~~--~~~~~~-i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall-----~~p~iliL 625 (694)
T TIGR03375 556 RDNIAL--GAP--YADDEE-ILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL-----RDPPILLL 625 (694)
T ss_pred HHHHhC--CCC--CCCHHH-HHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 444422 111 112222 2333333211 2455444 358999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHH
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVK 613 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~ 613 (621)
||||+++|+.... .+.+.+..+.+ +.+.|++|. +... . ...-.|+.+-.|+-+.. =+.+
T Consensus 626 -DE~Ts~LD~~te~-~i~~~l~~~~~-----~~T~iiItH------rl~~----~-~~~D~iivl~~G~i~e~---G~~~ 684 (694)
T TIGR03375 626 -DEPTSAMDNRSEE-RFKDRLKRWLA-----GKTLVLVTH------RTSL----L-DLVDRIIVMDNGRIVAD---GPKD 684 (694)
T ss_pred -eCCCCCCCHHHHH-HHHHHHHHHhC-----CCEEEEEec------CHHH----H-HhCCEEEEEeCCEEEee---CCHH
Confidence 9999999998864 45566665542 456777664 2211 1 22336778888887642 2445
Q ss_pred HHHHHhh
Q 007024 614 SIVKTLL 620 (621)
Q Consensus 614 ~~v~~Ll 620 (621)
.++..++
T Consensus 685 eLl~~~~ 691 (694)
T TIGR03375 685 QVLEALR 691 (694)
T ss_pred HHHHHhh
Confidence 5555543
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1.5e-17 Score=188.47 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=112.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhh-hhh------hcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-HAR------RLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~-~~~------~L~v~ 472 (621)
..+|+++||.+.+|+ +++|+||||||||||+++|+|++.|+.|+|.+ +.+ .++|++.|... +.. ++...
T Consensus 335 ~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~-~~~-~~i~~v~q~~~~~~~~~tv~e~l~~~ 410 (552)
T TIGR03719 335 KLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GET-VKLAYVDQSRDALDPNKTVWEEISGG 410 (552)
T ss_pred eeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE-CCc-eEEEEEeCCccccCCCCcHHHHHHhh
Confidence 358999999999999 99999999999999999999999999999998 333 37999999642 222 22111
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
......... ...+.+++..+.... .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||+..+ ..+
T Consensus 411 ~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~-----~~p~lllL-DEPt~~LD~~~~-~~l 482 (552)
T TIGR03719 411 LDIIQLGKR-EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK-----SGGNVLLL-DEPTNDLDVETL-RAL 482 (552)
T ss_pred ccccccCcc-hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh-----hCCCEEEE-eCCCCCCCHHHH-HHH
Confidence 100011111 122344555555432 35667889999999999999999 99999999 999999999886 344
Q ss_pred HHHHHHhhcCCCCCCceEEEecc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.|..+. + ++|++|.
T Consensus 483 ~~~l~~~~------~-~viivsH 498 (552)
T TIGR03719 483 EEALLEFA------G-CAVVISH 498 (552)
T ss_pred HHHHHHCC------C-eEEEEeC
Confidence 46665541 2 4666664
No 327
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.73 E-value=1.3e-17 Score=189.81 Aligned_cols=175 Identities=19% Similarity=0.156 Sum_probs=125.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++++|++++|+ +++|+||||+||||+++.|+|++.|++|+|.+++.|+. .+++++|...+
T Consensus 353 ~~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430 (574)
T ss_pred CcceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccH
Confidence 358999999999999 99999999999999999999999999999999998762 38999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh-------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR-------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~-------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+++.. ... ..+. +.+.++++.+.. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 431 ~~Ni~~--~~~--~~~~-~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall-----~~~~ilil- 499 (574)
T PRK11160 431 RDNLLL--AAP--NASD-EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL-----HDAPLLLL- 499 (574)
T ss_pred HHHhhc--CCC--ccCH-HHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 333322 110 1122 223344444322 2344433 348999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+... ..+.+.+..+.+ +.+.|++|+-..+ ... .-.|+.+..|+-+
T Consensus 500 DE~ts~lD~~t~-~~i~~~l~~~~~-----~~tviiitHr~~~----------~~~-~d~i~~l~~G~i~ 552 (574)
T PRK11160 500 DEPTEGLDAETE-RQILELLAEHAQ-----NKTVLMITHRLTG----------LEQ-FDRICVMDNGQII 552 (574)
T ss_pred eCCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEecChhH----------HHh-CCEEEEEeCCeEE
Confidence 999999999886 455566666532 4567777653221 111 2356677777665
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.73 E-value=1.5e-17 Score=171.08 Aligned_cols=157 Identities=17% Similarity=0.116 Sum_probs=108.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-----------Ecccccc-----------eeee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTF-----------RSGA 458 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-----------I~~~Dt~-----------Riga 458 (621)
.+|+++++ +.+|+ +++|+||||||||||++.|+|+++|+.|+|. +.+.++. ++++
T Consensus 15 ~~l~~i~~-i~~Ge--~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLPV-PREGQ--VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCCC-CCCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 47889985 88999 9999999999999999999999999999996 5565541 1344
Q ss_pred eehhhhhhhhc---ccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 459 VEQLRTHARRL---QVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 459 veQl~~~~~~L---~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+.|........ .+... .........+.++++.+.... .+.....+|||++|++.|+++|. .+|+++||
T Consensus 92 ~~~~~~~~~~~~~~~i~~~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~-----~~p~illl- 163 (255)
T cd03236 92 KPQYVDLIPKAVKGKVGEL--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALA-----RDADFYFF- 163 (255)
T ss_pred ecchhccCchHHHHHHHHH--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 44432111100 00000 011122233445555554433 25667789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+++|+..+ ..+.+.+..+.+. +.++|++|.
T Consensus 164 DEPts~LD~~~~-~~l~~~l~~l~~~----~~tIIiiSH 197 (255)
T cd03236 164 DEPSSYLDIKQR-LNAARLIRELAED----DNYVLVVEH 197 (255)
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHHhc----CCEEEEEEC
Confidence 999999999876 4455777777643 455666654
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.73 E-value=2.3e-17 Score=189.90 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=112.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhh-h------hhhcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT-H------ARRLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~-~------~~~L~v~ 472 (621)
..+|++++|.+.+|+ +++|+|||||||||||++|+|++.|+.|+|.+ +.+ .++|++.|... + .+++...
T Consensus 332 ~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~-~~i~y~~q~~~~l~~~~tv~e~l~~~ 407 (635)
T PRK11147 332 KQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK-LEVAYFDQHRAELDPEKTVMDNLAEG 407 (635)
T ss_pred eEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-cEEEEEeCcccccCCCCCHHHHHHhh
Confidence 358999999999999 99999999999999999999999999999988 544 47999998641 2 2222211
Q ss_pred eeecCCC-CCHHHHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 473 IFEKGYE-KDPAIVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 473 l~~~~~~-~d~~~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
.. ... ......+...+..+... ..+..+..+|||+++|+.|+++|. .+|+++|| ||||++||.... ..
T Consensus 408 ~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~-----~~p~lLlL-DEPt~~LD~~~~-~~ 478 (635)
T PRK11147 408 KQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL-----KPSNLLIL-DEPTNDLDVETL-EL 478 (635)
T ss_pred cc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHH-HH
Confidence 11 110 11122233444443332 135667889999999999999999 99999999 999999999885 45
Q ss_pred HHHHHHHhhcCCCCCCceEEEecc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+++..+ ..++|++|.
T Consensus 479 l~~~l~~~-------~~tvi~vSH 495 (635)
T PRK11147 479 LEELLDSY-------QGTVLLVSH 495 (635)
T ss_pred HHHHHHhC-------CCeEEEEEC
Confidence 55565543 236777765
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=99.73 E-value=1.4e-17 Score=191.86 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=117.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc--CcEEEEccccc-----ceeeeeehhhhhhhhccc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAACDT-----FRSGAVEQLRTHARRLQV- 471 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~--~GkV~I~~~Dt-----~RigaveQl~~~~~~L~v- 471 (621)
..+|+++|+.+.+|+ +++|+||||||||||++.|+|.+.+. +|+|.++|.+. .++|++.|...+...+.+
T Consensus 81 ~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 158 (659)
T PLN03211 81 RTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVR 158 (659)
T ss_pred CeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHH
Confidence 468999999999999 99999999999999999999999875 89999999764 248999997644333211
Q ss_pred ---ceee--c-CCCCCH---HHHHHHHHHHHhhcCC-C-----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 472 ---PIFE--K-GYEKDP---AIVAKEAIQEATRNGS-D-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 472 ---~l~~--~-~~~~d~---~~ia~~al~~~~~~~~-d-----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
.+.. . ...... ...+.+.++.+++.+. + .....+|||++||+.|+++|. .+|++++| ||
T Consensus 159 E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~-----~~P~iLlL-DE 232 (659)
T PLN03211 159 ETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEML-----INPSLLIL-DE 232 (659)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHH-----hCCCEEEE-eC
Confidence 1111 0 001112 1234445555444332 2 234568999999999999999 99999998 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||+|||+..+. .+.+.|+.+++. +.++|++|.
T Consensus 233 PtsgLD~~~~~-~l~~~L~~l~~~----g~TvI~~sH 264 (659)
T PLN03211 233 PTSGLDATAAY-RLVLTLGSLAQK----GKTIVTSMH 264 (659)
T ss_pred CCCCcCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 99999999874 555788777653 455566554
No 331
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=160.13 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=114.2
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceee--e------------eehhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG--A------------VEQLRT 464 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Rig--a------------veQl~~ 464 (621)
...++.+++|.+..|+ ++.|.||||+||||||++|||++.|..|+|.+.++.+.... + +.+.-+
T Consensus 14 e~~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLT 91 (209)
T COG4133 14 ERTLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELT 91 (209)
T ss_pred cceeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhh
Confidence 3467899999999999 99999999999999999999999999999999987652211 1 011112
Q ss_pred hhhhcccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 465 HARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 465 ~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
..++ +.|+...++.-....+.++++.+++.++ |..+..+|.|+|+|++|||-+. ..+++.|| |||++++|.
T Consensus 92 a~EN--L~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l-----s~~pLWiL-DEP~taLDk 163 (209)
T COG4133 92 ALEN--LHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL-----SPAPLWIL-DEPFTALDK 163 (209)
T ss_pred HHHH--HHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc-----CCCCceee-cCcccccCH
Confidence 2222 3333333332233456778888888887 7778889999999999999999 88899998 999999998
Q ss_pred HHHHHHHHHHHHHhhcC
Q 007024 544 VDQLSKFNQKLADLSSS 560 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~ 560 (621)
... ..|+..+..-+..
T Consensus 164 ~g~-a~l~~l~~~H~~~ 179 (209)
T COG4133 164 EGV-ALLTALMAAHAAQ 179 (209)
T ss_pred HHH-HHHHHHHHHHhcC
Confidence 764 5666666655544
No 332
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=2.5e-17 Score=187.88 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=125.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|++|++++|+ .++|+|+||||||||++.|+|++.|++|+|.+++.|.. ++++++|....
T Consensus 354 ~~il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti 431 (592)
T PRK10790 354 NLVLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTF 431 (592)
T ss_pred CceeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchH
Confidence 458999999999999 99999999999999999999999999999999998762 49999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +.. ..+..+ +.++++.++. .++|..+ ..+|||++||..|||+|. .+|+++||
T Consensus 432 ~~NI~--~~~---~~~d~~-i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl-----~~~~illl 500 (592)
T PRK10790 432 LANVT--LGR---DISEEQ-VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLV-----QTPQILIL 500 (592)
T ss_pred HHHHH--hCC---CCCHHH-HHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 34432 221 112222 2334333221 2445444 358999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+... +.+.+.+..+.. ..+.|++|.=-. ... ..--|+.+..|+-+
T Consensus 501 -DEpts~LD~~t~-~~i~~~l~~~~~-----~~tvIivtHr~~----------~l~-~~D~ii~l~~G~i~ 553 (592)
T PRK10790 501 -DEATANIDSGTE-QAIQQALAAVRE-----HTTLVVIAHRLS----------TIV-EADTILVLHRGQAV 553 (592)
T ss_pred -eCCcccCCHHHH-HHHHHHHHHHhC-----CCEEEEEecchH----------HHH-hCCEEEEEECCEEE
Confidence 999999999875 455566666543 356777764211 111 12356667777765
No 333
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.72 E-value=2.4e-17 Score=188.05 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=124.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-----h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~-----~ 465 (621)
..+|+++++.+++|+ .++|+|+||+|||||++.|+|++.|++|.|.+++.|+. ++++++|... .
T Consensus 348 ~~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425 (588)
T ss_pred CceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccH
Confidence 358999999999999 99999999999999999999999999999999998752 4899999873 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHh--------hcCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~--------~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +... ..+..+ ...+++.+. ..++|..+. .+|||++||..|||+|. .+|+++||
T Consensus 426 ~~Ni~--~~~~--~~~d~~-i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall-----~~~~iliL 495 (588)
T PRK13657 426 EDNIR--VGRP--DATDEE-MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALL-----KDPPILIL 495 (588)
T ss_pred HHHHh--cCCC--CCCHHH-HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 33332 2111 112222 223333321 124565544 48999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+.+..+.. ..+.|++|.=.. . ... -=.|+.+.+|+.+
T Consensus 496 -DEpts~LD~~t~~-~i~~~l~~~~~-----~~tvIiitHr~~-------~---~~~-~D~ii~l~~G~i~ 548 (588)
T PRK13657 496 -DEATSALDVETEA-KVKAALDELMK-----GRTTFIIAHRLS-------T---VRN-ADRILVFDNGRVV 548 (588)
T ss_pred -eCCccCCCHHHHH-HHHHHHHHHhc-----CCEEEEEEecHH-------H---HHh-CCEEEEEECCEEE
Confidence 9999999998764 44455555432 467788775221 1 111 2256777777655
No 334
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.72 E-value=3e-17 Score=186.15 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=116.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+++++.+++|+ .++|+|+||+|||||++.|+|++.|++|+|.+++.|+- .++++.|...+
T Consensus 345 ~~il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti 422 (571)
T TIGR02203 345 RPALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTI 422 (571)
T ss_pred CccccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccH
Confidence 458999999999999 99999999999999999999999999999999997751 38999998743
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +... ...+.. ...++++.+.. .++|..+. .+|||++||.+|||++. .+|+++||
T Consensus 423 ~~Ni~--~~~~-~~~~~~-~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall-----~~~~illL 493 (571)
T TIGR02203 423 ANNIA--YGRT-EQADRA-EIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL-----KDAPILIL 493 (571)
T ss_pred HHHHh--cCCC-CCCCHH-HHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 33332 2110 011222 22333333221 24555543 37999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+++|..... .+.+.|..+.+ +.+.|++|+
T Consensus 494 -DEpts~LD~~~~~-~i~~~L~~~~~-----~~tiIiitH 526 (571)
T TIGR02203 494 -DEATSALDNESER-LVQAALERLMQ-----GRTTLVIAH 526 (571)
T ss_pred -eCccccCCHHHHH-HHHHHHHHHhC-----CCEEEEEeh
Confidence 9999999999864 44566665532 457788776
No 335
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.72 E-value=2.8e-17 Score=191.38 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=124.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~----- 465 (621)
..+|+|+++++++|+ .++|+|+|||||||+++.|+|++.|++|+|.++|.|+ -++|++.|...+
T Consensus 487 ~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI 564 (708)
T TIGR01193 487 SNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSI 564 (708)
T ss_pred CcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHH
Confidence 468999999999999 9999999999999999999999999999999999886 149999998643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.. ... ...+..+ ..++++.+.. .++|..+. .+|||++||+.|||+|. .+|+++||
T Consensus 565 ~eNi~l--~~~-~~~~~~~-i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall-----~~p~iliL 635 (708)
T TIGR01193 565 LENLLL--GAK-ENVSQDE-IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALL-----TDSKVLIL 635 (708)
T ss_pred HHHHhc--cCC-CCCCHHH-HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHh-----hCCCEEEE
Confidence 344322 100 1112222 2333333221 24555543 47999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+.+..+ .+.+.|++|.=-.+ . ...-.|+.+..|+-+
T Consensus 636 -DE~Ts~LD~~te~-~i~~~L~~~------~~~T~IiitHr~~~----------~-~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 636 -DESTSNLDTITEK-KIVNNLLNL------QDKTIIFVAHRLSV----------A-KQSDKIIVLDHGKII 687 (708)
T ss_pred -eCccccCCHHHHH-HHHHHHHHh------cCCEEEEEecchHH----------H-HcCCEEEEEECCEEE
Confidence 9999999998764 444555543 14566776642111 1 112356677777765
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.7e-17 Score=154.50 Aligned_cols=126 Identities=27% Similarity=0.349 Sum_probs=96.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEK 480 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~ 480 (621)
.+|+++++.+.+|+ +++|+|+||+||||+++.|+|.+.+..|+|.+.+.+.... .. ..+...+.
T Consensus 13 ~~l~~~~~~i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~---~~-~~~~~~i~---------- 76 (157)
T cd00267 13 TALDNVSLTLKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL---PL-EELRRRIG---------- 76 (157)
T ss_pred eeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC---CH-HHHHhceE----------
Confidence 58999999999999 9999999999999999999999999999999988754210 00 00000000
Q ss_pred CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 481 d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
++.++|||+++++.++++|+ .+|+++++ |||++|+|...+ ..+.+.+..+...
T Consensus 77 --------------------~~~qlS~G~~~r~~l~~~l~-----~~~~i~il-DEp~~~lD~~~~-~~l~~~l~~~~~~ 129 (157)
T cd00267 77 --------------------YVPQLSGGQRQRVALARALL-----LNPDLLLL-DEPTSGLDPASR-ERLLELLRELAEE 129 (157)
T ss_pred --------------------EEeeCCHHHHHHHHHHHHHh-----cCCCEEEE-eCCCcCCCHHHH-HHHHHHHHHHHHC
Confidence 01119999999999999999 99999999 999999999875 4566777766542
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
+.+.+++|.
T Consensus 130 ----~~tii~~sh 138 (157)
T cd00267 130 ----GRTVIIVTH 138 (157)
T ss_pred ----CCEEEEEeC
Confidence 345566553
No 337
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.72 E-value=2.3e-17 Score=192.16 Aligned_cols=173 Identities=18% Similarity=0.218 Sum_probs=122.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|+||++++|+ .++|+||||+||||+++.|+|++.|++|+|.++|.|+. +++++.|...+
T Consensus 494 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTI 571 (711)
T TIGR00958 494 VPVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSV 571 (711)
T ss_pred CccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCH
Confidence 468999999999999 99999999999999999999999999999999998862 48999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+|+.... .. .+. +...++++.+.. .++|..+. .+|||++||++|||+|. .+|+++||
T Consensus 572 reNI~~g~--~~--~~~-e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl-----~~p~ILIL 641 (711)
T TIGR00958 572 RENIAYGL--TD--TPD-EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV-----RKPRVLIL 641 (711)
T ss_pred HHHHhcCC--CC--CCH-HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 34432211 11 112 223334433221 24555543 48999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+ ... ..+.+.|++|. +... .. .---|+++..|+-+
T Consensus 642 -DEpTSaLD~~te~-~i~~----~~~---~~~~TvIiItH------rl~~----i~-~aD~IivL~~G~iv 692 (711)
T TIGR00958 642 -DEATSALDAECEQ-LLQE----SRS---RASRTVLLIAH------RLST----VE-RADQILVLKKGSVV 692 (711)
T ss_pred -EccccccCHHHHH-HHHH----hhc---cCCCeEEEEec------cHHH----HH-hCCEEEEEECCEEE
Confidence 9999999997653 2322 111 12567777774 2211 11 12366777777765
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=4.4e-17 Score=187.61 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=117.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh------hhhc----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH------ARRL---- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~------~~~L---- 469 (621)
..+|++|||.+.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+. .+++++.|.... .+.+
T Consensus 16 ~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 16 APLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred ceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 458999999999999 99999999999999999999999999999998762 234444442110 0000
Q ss_pred -------------c-----------ccee-------ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHH
Q 007024 470 -------------Q-----------VPIF-------EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRA 518 (621)
Q Consensus 470 -------------~-----------v~l~-------~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~Lara 518 (621)
. +..+ ...........+.+++..++.. .+..+.++|||+++++.||++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGekqRv~LAra 170 (635)
T PRK11147 92 EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGWLRKAALGRA 170 (635)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHHHHHHHHHHH
Confidence 0 0000 0000011122334444444432 366778999999999999999
Q ss_pred HHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEE
Q 007024 519 LSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFV 598 (621)
Q Consensus 519 L~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fv 598 (621)
|+ .+|+++|| ||||++||+..+ ..+.+.|..+ ..++|++|. | ...+ ....-.|+.+
T Consensus 171 L~-----~~P~lLLL-DEPt~~LD~~~~-~~L~~~L~~~-------~~tvlivsH-d-----~~~l----~~~~d~i~~L 226 (635)
T PRK11147 171 LV-----SNPDVLLL-DEPTNHLDIETI-EWLEGFLKTF-------QGSIIFISH-D-----RSFI----RNMATRIVDL 226 (635)
T ss_pred Hh-----cCCCEEEE-cCCCCccCHHHH-HHHHHHHHhC-------CCEEEEEeC-C-----HHHH----HHhcCeEEEE
Confidence 99 99999999 999999999886 4555666544 235666664 2 2222 2223367777
Q ss_pred ecCCCC
Q 007024 599 GCGQSY 604 (621)
Q Consensus 599 g~Gq~v 604 (621)
..|+-+
T Consensus 227 ~~G~i~ 232 (635)
T PRK11147 227 DRGKLV 232 (635)
T ss_pred ECCEEE
Confidence 777653
No 339
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.72 E-value=4.6e-17 Score=163.28 Aligned_cols=168 Identities=21% Similarity=0.224 Sum_probs=119.1
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeeh-hh-hh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQ-LR-TH 465 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQ-l~-~~ 465 (621)
....+|.+|++.+++|+ -.+|+|||||||||||+.|++.+.|.+|.|.+.|.-. .+||+|-- +. .+
T Consensus 42 ~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~ 119 (257)
T COG1119 42 NGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERF 119 (257)
T ss_pred CCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhc
Confidence 44679999999999999 9999999999999999999999999999999887532 13555531 11 11
Q ss_pred hhhc---cc---------ceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 466 ARRL---QV---------PIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 466 ~~~L---~v---------~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.... .+ .+|...+.......+...++.++.... |..+..+|-|+++++-|||||+ .+|.++|
T Consensus 120 ~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv-----~~P~LLi 194 (257)
T COG1119 120 RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV-----KDPELLI 194 (257)
T ss_pred ccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh-----cCCCEEE
Confidence 1111 11 111111111222444555666555444 7788899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
| |||+.|+|...+. .+.+.+.+++.. .-..+.+++|...+
T Consensus 195 L-DEP~~GLDl~~re-~ll~~l~~~~~~--~~~~~ll~VtHh~e 234 (257)
T COG1119 195 L-DEPAQGLDLIARE-QLLNRLEELAAS--PGAPALLFVTHHAE 234 (257)
T ss_pred e-cCccccCChHHHH-HHHHHHHHHhcC--CCCceEEEEEcchh
Confidence 9 9999999999864 444666666543 23566778877544
No 340
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.72 E-value=4.6e-17 Score=173.01 Aligned_cols=144 Identities=22% Similarity=0.170 Sum_probs=104.1
Q ss_pred EEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc----cceeecCCCCCH---HHH
Q 007024 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ----VPIFEKGYEKDP---AIV 485 (621)
Q Consensus 420 LVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~----v~l~~~~~~~d~---~~i 485 (621)
|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+. +.+....++... ...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999987752 3899998754333221 111111111121 223
Q ss_pred HHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 486 AKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 486 a~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
+.++++.+.+.. .+..+..+||||+|++.|+|+|+ .+|+++|| ||||+|||+..+. .+.+.|..+.+. .
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~-----~~p~lllL-DEP~s~LD~~~~~-~l~~~l~~l~~~---~ 150 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV-----FKPKILLL-DEPLSALDKKLRD-QMQLELKTIQEQ---L 150 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCCccCCHHHHH-HHHHHHHHHHHh---c
Confidence 445555554443 36677889999999999999999 99999999 9999999999864 555677666542 2
Q ss_pred CceEEEecc
Q 007024 565 LIDGILLTK 573 (621)
Q Consensus 565 ~it~IIlTK 573 (621)
+.++|++|.
T Consensus 151 g~tiiivTH 159 (325)
T TIGR01187 151 GITFVFVTH 159 (325)
T ss_pred CCEEEEEeC
Confidence 567777775
No 341
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.72 E-value=4.4e-17 Score=184.25 Aligned_cols=177 Identities=22% Similarity=0.241 Sum_probs=124.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++++|++++|+ .++|+|||||||||+++.|+|++.|+.|+|.+++.++. ++++++|...+
T Consensus 331 ~~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTV 408 (544)
T ss_pred ccccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccH
Confidence 468999999999999 99999999999999999999999999999999988752 38999997643
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHh------h--cCCCcc----ccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEAT------R--NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~------~--~~~d~v----liDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. ++.. ..+..+ ..++++.+. . .+++.. -..+|||++||+.|||+|. .+|+++||
T Consensus 409 ~~Ni~--~~~~--~~~~~~-~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall-----~~~~ilil 478 (544)
T TIGR01842 409 AENIA--RFGE--NADPEK-IIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY-----GDPKLVVL 478 (544)
T ss_pred HHHHh--ccCC--CCCHHH-HHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 23321 1111 111222 122222211 1 133433 3568999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+... ..+.+.+..+.. .+.+.|++|.- ... +. ..--|+.+..|+-+.
T Consensus 479 -DEpts~LD~~~~-~~i~~~l~~~~~----~~~tvi~ith~------~~~-~~----~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 479 -DEPNSNLDEEGE-QALANAIKALKA----RGITVVVITHR------PSL-LG----CVDKILVLQDGRIAR 533 (544)
T ss_pred -eCCccccCHHHH-HHHHHHHHHHhh----CCCEEEEEeCC------HHH-HH----hCCEEEEEECCEEEe
Confidence 999999999875 455566766542 24567776642 211 11 223577777777653
No 342
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.71 E-value=6.1e-17 Score=183.28 Aligned_cols=178 Identities=13% Similarity=0.072 Sum_probs=124.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~v 471 (621)
.+|++++|++++|+ .++|+||||||||||++.|+|++.|+.|+|.+++.|+. +++++.|...+....-
T Consensus 337 ~~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti- 413 (547)
T PRK10522 337 FSVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL- 413 (547)
T ss_pred eEEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhh-
Confidence 58999999999999 99999999999999999999999999999999998762 3889999775443321
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcCC-Cc---c--ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNGS-DV---V--LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~~-d~---v--liDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
...+. ....+.+.++++.+..... +. . =..+|||++||+.|||+|. .+|+++|| ||||+++|+..
T Consensus 414 --~~n~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~-----~~~~ilil-DE~ts~LD~~~ 484 (547)
T PRK10522 414 --GPEGK-PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALA-----EERDILLL-DEWAADQDPHF 484 (547)
T ss_pred --ccccC-chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCHHH
Confidence 01110 1112233444444322211 10 0 1368999999999999999 99999999 99999999987
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
.. .+.+.+...... .+.+.|++|.- . +... ..-.|+.+..|+-+.
T Consensus 485 ~~-~i~~~l~~~~~~---~~~tvi~itH~------~----~~~~-~~d~i~~l~~G~i~e 529 (547)
T PRK10522 485 RR-EFYQVLLPLLQE---MGKTIFAISHD------D----HYFI-HADRLLEMRNGQLSE 529 (547)
T ss_pred HH-HHHHHHHHHHHh---CCCEEEEEEec------h----HHHH-hCCEEEEEECCEEEE
Confidence 64 444555433211 25677887752 1 1122 233678888888663
No 343
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.71 E-value=5.6e-17 Score=183.95 Aligned_cols=180 Identities=18% Similarity=0.117 Sum_probs=125.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQV 471 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~v 471 (621)
.+|+++||++++|+ +++|+||||+||||+++.|+|++.|++|+|.++|.|+. .++++.|...+....-.
T Consensus 356 ~~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 433 (555)
T TIGR01194 356 FALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIG 433 (555)
T ss_pred ceeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhh
Confidence 48999999999999 99999999999999999999999999999999998762 37888887644322100
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcC--------CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNG--------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~--------~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+ ........+.+.++++.+...+ ++. ...+|||++||++|||+|. .+|+++|| ||||+++|+
T Consensus 434 ~---n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall-----~~~~ilil-DE~ts~LD~ 503 (555)
T TIGR01194 434 P---DEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWL-----EDRPILLF-DEWAADQDP 503 (555)
T ss_pred c---ccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCH
Confidence 0 0011111222344454443221 222 2568999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDL 607 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL 607 (621)
......++..+..+.. .+.+.|++|.-.. .+ ...-.|+.+-.|+-+.++
T Consensus 504 ~~~~~i~~~l~~~~~~----~~~tiiiisH~~~-------~~----~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 504 AFKRFFYEELLPDLKR----QGKTIIIISHDDQ-------YF----ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHHHHHHHHh----CCCEEEEEeccHH-------HH----HhCCEEEEEECCEEEEec
Confidence 8864333333333322 2567788775211 11 233467788888877665
No 344
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=7.3e-17 Score=161.86 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=135.8
Q ss_pred HHHHHHHHcCC---CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc--c--eeee
Q 007024 386 MEEALVRILTP---RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT--F--RSGA 458 (621)
Q Consensus 386 l~~~L~~il~p---~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt--~--Riga 458 (621)
+...+.....+ .....+|+||||++.+|+ .++|||+||||||||++.|+|.++|++|+|.+.+.=. + -.|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf 100 (249)
T COG1134 23 LKKRLKGLAKGGRKVAEFWALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGF 100 (249)
T ss_pred HHHHHHHHhcCCCCcceEEEecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCC
Confidence 34444444433 234679999999999999 9999999999999999999999999999999988433 2 2333
Q ss_pred eehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 459 VEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 459 veQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
-.++.-.-++.-..++......+......++++++++.+| +..+-..|.||+-|++++-+.. .+||++|+ ||.
T Consensus 101 ~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~-----~~pdILll-DEv 174 (249)
T COG1134 101 DPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATH-----VEPDILLL-DEV 174 (249)
T ss_pred CcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhh-----cCCCEEEE-ehh
Confidence 3333211111111111111123445677888888888777 6666677999999999999998 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++--|+.=+.+-. +.+..+... ..+++++|. ..+.+- ..+-.++++-.||-.
T Consensus 175 lavGD~~F~~K~~-~rl~e~~~~----~~tiv~VSH------d~~~I~----~~Cd~~i~l~~G~i~ 226 (249)
T COG1134 175 LAVGDAAFQEKCL-ERLNELVEK----NKTIVLVSH------DLGAIK----QYCDRAIWLEHGQIR 226 (249)
T ss_pred hhcCCHHHHHHHH-HHHHHHHHc----CCEEEEEEC------CHHHHH----HhcCeeEEEeCCEEE
Confidence 9999987654333 444444332 356677663 344444 444589999999865
No 345
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.71 E-value=3.3e-17 Score=186.33 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=113.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~----- 465 (621)
..+|+++++.+++|+ +++|+|||||||||+++.|+|++.|++|+|.+++.++ .+++++.|...+
T Consensus 328 ~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti 405 (569)
T PRK10789 328 HPALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405 (569)
T ss_pred CccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccH
Confidence 458999999999999 9999999999999999999999999999999998775 238999987633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +.... ..... ..++++.+.. .+++..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 406 ~~Ni~--~~~~~--~~~~~-~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall-----~~~~illl 475 (569)
T PRK10789 406 ANNIA--LGRPD--ATQQE-IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL-----LNAEILIL 475 (569)
T ss_pred HHHHh--cCCCC--CCHHH-HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 33332 21111 11222 2233332211 2334332 458999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+++|+.... .+.+.+..+.. +.+.|++|.
T Consensus 476 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~tii~itH 508 (569)
T PRK10789 476 -DDALSAVDGRTEH-QILHNLRQWGE-----GRTVIISAH 508 (569)
T ss_pred -ECccccCCHHHHH-HHHHHHHHHhC-----CCEEEEEec
Confidence 9999999998864 44466665532 456777765
No 346
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.71 E-value=4.8e-17 Score=189.02 Aligned_cols=176 Identities=17% Similarity=0.197 Sum_probs=125.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-----h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~-----~ 465 (621)
..+|+++||.+++|+ .++|+|+|||||||+++.|+|++.|++|+|.++|.|+. ++|++.|... .
T Consensus 470 ~~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti 547 (694)
T TIGR01846 470 PEVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSI 547 (694)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhH
Confidence 458999999999999 99999999999999999999999999999999998862 3899999763 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.+ ... ..+.. ...++++.+.. .+++..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 548 ~eNi~~--~~~--~~~~~-~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall-----~~~~ilil 617 (694)
T TIGR01846 548 RDNIAL--CNP--GAPFE-HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV-----GNPRILIF 617 (694)
T ss_pred HHHHhc--CCC--CCCHH-HHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 444322 111 11122 22233332211 2455443 358999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+.... .+.+.+..+.. +.+.|++|.--. .... .-.|+.+.+|+-+.
T Consensus 618 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~t~i~itH~~~----------~~~~-~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 618 -DEATSALDYESEA-LIMRNMREICR-----GRTVIIIAHRLS----------TVRA-CDRIIVLEKGQIAE 671 (694)
T ss_pred -ECCCcCCCHHHHH-HHHHHHHHHhC-----CCEEEEEeCChH----------HHHh-CCEEEEEeCCEEEE
Confidence 9999999998864 45566665532 456777775221 1222 33577777787653
No 347
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.4e-17 Score=179.84 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=130.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------c--eeeeeehhhhhhhhc--
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------F--RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~--RigaveQl~~~~~~L-- 469 (621)
.++.+++|++++|+ .++|||++||||||+++.|+|+++|+.|+|.+++.+. + .+++|.|.+.+...-
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 78999999999999 9999999999999999999999999999999999876 1 388888877432211
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHHhh-------cCCCccccc----cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEATR-------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~~~-------~~~d~vliD----tSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
|+.+... ... .+.+.++++.+.. .+.|.++.| +|||+.||+++||+|. .+++++|| |||
T Consensus 413 eNi~l~~~--~~s-~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll-----~~~~l~ll-DEp 483 (559)
T COG4988 413 ENILLARP--DAS-DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALL-----SPASLLLL-DEP 483 (559)
T ss_pred HHhhccCC--cCC-HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhc-----CCCCEEEe-cCC
Confidence 2322211 111 2223344443322 356778888 8999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|+++|..+- +.+.+.|.++++ .-+.+++|+=.. .+ ...-.|+++-+|+-+.
T Consensus 484 TA~LD~etE-~~i~~~l~~l~~-----~ktvl~itHrl~------~~-----~~~D~I~vld~G~l~~ 534 (559)
T COG4988 484 TAHLDAETE-QIILQALQELAK-----QKTVLVITHRLE------DA-----ADADRIVVLDNGRLVE 534 (559)
T ss_pred ccCCCHhHH-HHHHHHHHHHHh-----CCeEEEEEcChH------HH-----hcCCEEEEecCCceec
Confidence 999999875 455577777765 356777775222 22 2233677788887764
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.1e-16 Score=152.76 Aligned_cols=206 Identities=24% Similarity=0.260 Sum_probs=141.5
Q ss_pred HHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc-----ccce--------
Q 007024 389 ALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC-----DTFR-------- 455 (621)
Q Consensus 389 ~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~-----Dt~R-------- 455 (621)
.|++.+.|.. -.++|||.+.+|+ +.+|||.+|+||||||++|++.+.|+.|.|.+... |+|+
T Consensus 11 ~lsk~Yg~~~---gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~ 85 (258)
T COG4107 11 GLSKLYGPGK---GCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRR 85 (258)
T ss_pred hhhhhhCCCc---CccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHH
Confidence 4667776543 4578999999999 99999999999999999999999999999998763 3331
Q ss_pred -----eeeeehhhhhhhhcccc-----------eeecCCCCCHHHHHHHHHHHHhh--cCCCccccccchhHHhHHHHHH
Q 007024 456 -----SGAVEQLRTHARRLQVP-----------IFEKGYEKDPAIVAKEAIQEATR--NGSDVVLVDTAGRMQDNEPLMR 517 (621)
Q Consensus 456 -----igaveQl~~~~~~L~v~-----------l~~~~~~~d~~~ia~~al~~~~~--~~~d~vliDtSGg~qqr~~Lar 517 (621)
.|+|.|.+.-.-++.+. .-.+.|+. ....+.+.++..+. ...|-.+-..||||+|+..|||
T Consensus 86 L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~-iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 86 LLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGN-IRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred HhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhh-HHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 78888876443333221 11122332 22233334443322 2234455567999999999999
Q ss_pred HHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEE
Q 007024 518 ALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597 (621)
Q Consensus 518 aL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~f 597 (621)
.|. ..|.++++ ||||-|||...|++.+ +.++.+.. ..++..+|+|. | .+.+--+++ ....
T Consensus 165 nLV-----t~PrLvfM-DEPTGGLDVSVQARLL-DllrgLv~---~l~la~viVTH-D-----l~VarLla~----rlmv 224 (258)
T COG4107 165 NLV-----TRPRLVFM-DEPTGGLDVSVQARLL-DLLRGLVR---ELGLAVVIVTH-D-----LAVARLLAD----RLMV 224 (258)
T ss_pred Hhc-----cCCceEEe-cCCCCCcchhhHHHHH-HHHHHHHH---hcCceEEEEec-h-----hHHHHHhhh----ccee
Confidence 999 99999999 9999999999887555 56666654 45888999885 2 333322222 3333
Q ss_pred EecCC---------CCCcccCCCHHHHHHHhh
Q 007024 598 VGCGQ---------SYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 598 vg~Gq---------~v~DL~~~~~~~~v~~Ll 620 (621)
+-.|| ..+|-+..+..-+|+..|
T Consensus 225 mk~g~vve~GLTDrvLDDP~hPYTQLLVSsvL 256 (258)
T COG4107 225 MKQGQVVESGLTDRVLDDPHHPYTQLLVSSVL 256 (258)
T ss_pred ecCCCEeccccccccccCCCCchHHHHHHHhc
Confidence 33343 345677777787887765
No 349
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.70 E-value=6.9e-17 Score=183.53 Aligned_cols=176 Identities=18% Similarity=0.209 Sum_probs=125.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-----h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~-----~ 465 (621)
..+|++++|++++|+ .++|+|+||+||||+++.|+|++.|..|+|.+++.++. .+++++|... .
T Consensus 353 ~~iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASV 430 (576)
T ss_pred CccccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccH
Confidence 458999999999999 99999999999999999999999999999999997651 3899999874 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+|+... .. ..+. +...++++.+.. .+++..+ ..+|||++||+.|||++. .+|+++||
T Consensus 431 ~~Ni~~~--~~--~~~~-~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~-----~~~~ilil 500 (576)
T TIGR02204 431 MENIRYG--RP--DATD-EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL-----KDAPILLL 500 (576)
T ss_pred HHHHhcC--CC--CCCH-HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH-----hCCCeEEE
Confidence 4443221 10 1112 222333333211 2344333 348999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|.... +.+.+.+..+.+ +.+.|++|.-.+. +. ..-.|+.+..|+-+.
T Consensus 501 -DEpts~lD~~~~-~~i~~~l~~~~~-----~~t~IiitH~~~~-------~~----~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 501 -DEATSALDAESE-QLVQQALETLMK-----GRTTLIIAHRLAT-------VL----KADRIVVMDQGRIVA 554 (576)
T ss_pred -eCcccccCHHHH-HHHHHHHHHHhC-----CCEEEEEecchHH-------HH----hCCEEEEEECCEEEe
Confidence 999999999875 455566666532 4677887763321 11 123567777887663
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=8.9e-17 Score=186.65 Aligned_cols=175 Identities=16% Similarity=0.166 Sum_probs=122.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh----hhcccceeec
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA----RRLQVPIFEK 476 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~----~~L~v~l~~~ 476 (621)
.+|+++||.+.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+. .++|++.|..... ......+. .
T Consensus 523 ~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~~~l~~~~~~~~~~~-~ 597 (718)
T PLN03073 523 LLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHVDGLDLSSNPLLYMM-R 597 (718)
T ss_pred eeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEeccccccCCcchhHHHHHH-H
Confidence 37999999999999 99999999999999999999999999999988653 4799999864111 11001110 0
Q ss_pred CCCCCHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 477 GYEKDPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
.+.......+..++..+...+ .+..+..+|||++|++.|+++|. .+|+++|| ||||+|||+.... .+.+.+
T Consensus 598 ~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~-----~~p~lLLL-DEPT~~LD~~s~~-~l~~~L 670 (718)
T PLN03073 598 CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-----KKPHILLL-DEPSNHLDLDAVE-ALIQGL 670 (718)
T ss_pred hcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCCCCCHHHHH-HHHHHH
Confidence 111111233455565555432 25567889999999999999999 99999999 9999999998764 333444
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+ .+ ++|++|. |. . .+....-.|+++..|+-+
T Consensus 671 ~~~------~g-tvIivSH-d~-----~----~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 671 VLF------QG-GVLMVSH-DE-----H----LISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHc------CC-EEEEEEC-CH-----H----HHHHhCCEEEEEECCEEE
Confidence 332 13 6677664 21 1 233334578888888754
No 351
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.70 E-value=7.9e-17 Score=183.01 Aligned_cols=176 Identities=19% Similarity=0.254 Sum_probs=124.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhh----
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH---- 465 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~---- 465 (621)
...+|+|+||.+++|+ .++||||+||||||+++.|++++.|+.|+|.++|.|+ .++|+|+|...+
T Consensus 341 ~~~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGT 418 (567)
T ss_pred CCccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeeccc
Confidence 3468999999999999 9999999999999999999999999999999998887 249999997743
Q ss_pred -hhhcccceeecCCCCCHHHHHHHHHHHH------h--hcCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 466 -ARRLQVPIFEKGYEKDPAIVAKEAIQEA------T--RNGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 466 -~~~L~v~l~~~~~~~d~~~ia~~al~~~------~--~~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+++ .+.... ... +.+.++++.+ . -.++|..+. .+|||++||++|||+|. .+|++++
T Consensus 419 I~~NI--~~g~~~--at~-eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall-----~~~~ILI 488 (567)
T COG1132 419 IRENI--ALGRPD--ATD-EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL-----RNPPILI 488 (567)
T ss_pred HHHHH--hcCCCC--CCH-HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 3333 221111 111 1222333322 1 125676664 68999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||+++|+.... .+.+.+..+.+ +.+.++++ ++...+.. .-.|+++-.|+-+
T Consensus 489 L-DEaTSalD~~tE~-~I~~~l~~l~~-----~rT~iiIa------HRlsti~~-----aD~IiVl~~G~i~ 542 (567)
T COG1132 489 L-DEATSALDTETEA-LIQDALKKLLK-----GRTTLIIA------HRLSTIKN-----ADRIIVLDNGRIV 542 (567)
T ss_pred E-eccccccCHHhHH-HHHHHHHHHhc-----CCEEEEEe------ccHhHHHh-----CCEEEEEECCEEE
Confidence 9 9999999998864 44466665542 12444433 23322222 3368888888743
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=99.70 E-value=2.1e-17 Score=188.37 Aligned_cols=171 Identities=16% Similarity=0.113 Sum_probs=114.2
Q ss_pred HHHHHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-----------Ecccccc
Q 007024 386 MEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTF 454 (621)
Q Consensus 386 l~~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-----------I~~~Dt~ 454 (621)
|.+.++.-+.+ ...+|++++ .+.+|+ +++|+||||+||||++++|+|+++|+.|+|. +.|.++.
T Consensus 75 ~~~~~~~~yg~--~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 75 LEEEPVHRYGV--NGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred hccCceEEecC--CceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHH
Confidence 34444444432 124789998 899999 9999999999999999999999999999997 7676541
Q ss_pred -----------eeeeeehhhhhhhhc-ccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHh
Q 007024 455 -----------RSGAVEQLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSK 521 (621)
Q Consensus 455 -----------RigaveQl~~~~~~L-~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~ 521 (621)
++++..|.......+ ...+.......+....+.++++.+.+.. .+..+.++|||++|++.||++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~- 228 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALL- 228 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh-
Confidence 123333321111100 0000000000112233445555554443 36778899999999999999999
Q ss_pred hhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 522 LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 522 l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+|+++|| ||||++||+..+. .+.+.++.+.+ +.++|++|.
T Consensus 229 ----~~p~lllL-DEPts~LD~~~~~-~l~~~i~~l~~-----g~tvIivsH 269 (590)
T PRK13409 229 ----RDADFYFF-DEPTSYLDIRQRL-NVARLIRELAE-----GKYVLVVEH 269 (590)
T ss_pred ----cCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHC-----CCEEEEEeC
Confidence 99999999 9999999998764 55577777754 445566554
No 353
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.70 E-value=8.7e-17 Score=183.48 Aligned_cols=174 Identities=19% Similarity=0.206 Sum_probs=121.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|++++|.+++|+ +++|+||||+||||+++.|+|++.|++|+|.+++.+.. .++++.|...+ .
T Consensus 349 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 349 QGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 57999999999999 99999999999999999999999999999999988752 38899997643 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHH-------hh-cCCCcc----ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEA-------TR-NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~-------~~-~~~d~v----liDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+++ .+.... .+..++ .++++.+ .. .+++.. ...+|||++||+.|||+|. .+|+++||
T Consensus 427 ~Ni--~~~~~~--~~~~~~-~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall-----~~p~ilil- 495 (585)
T TIGR01192 427 ENI--RLGREG--ATDEEV-YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL-----KNAPILVL- 495 (585)
T ss_pred HHH--hcCCCC--CCHHHH-HHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 222 121111 112111 2222211 11 233322 3458999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+... +.+.+.+..+.. +.+.|++|.--+ ... ..--|+.+..|+-+
T Consensus 496 DEpts~LD~~~~-~~i~~~l~~~~~-----~~tvI~isH~~~----------~~~-~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 496 DEATSALDVETE-ARVKNAIDALRK-----NRTTFIIAHRLS----------TVR-NADLVLFLDQGRLI 548 (585)
T ss_pred ECCccCCCHHHH-HHHHHHHHHHhC-----CCEEEEEEcChH----------HHH-cCCEEEEEECCEEE
Confidence 999999999886 455566665532 456777665211 111 13366777777654
No 354
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.3e-16 Score=174.32 Aligned_cols=161 Identities=21% Similarity=0.245 Sum_probs=112.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------e--eeeeehhhhhhhhc-
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------R--SGAVEQLRTHARRL- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------R--igaveQl~~~~~~L- 469 (621)
..+|+++||+++.|+ .++|+|+|||||||.|+.|.+++. ++|+|+|+|.|+. | ||+|+|...+.+.-
T Consensus 365 ~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 365 RKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI 441 (591)
T ss_pred CceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence 358999999999999 999999999999999999999999 9999999999982 3 99999987544322
Q ss_pred --ccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 470 --QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 470 --~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
|+.+ ... .....++ .++.+.+.. .+|+..+ .-+|||++|++.+||++. -+|++++| |
T Consensus 442 l~NI~Y-Gn~-sas~eeV-~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l-----Kda~Il~~-D 512 (591)
T KOG0057|consen 442 LYNIKY-GNP-SASDEEV-VEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL-----KDAPILLL-D 512 (591)
T ss_pred HHHhhc-CCC-CcCHHHH-HHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh-----cCCCeEEe-c
Confidence 2211 000 1112222 222222211 1333323 246999999999999999 89999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
|||+.||...-...+. .+.+... ....+.|+..+|++
T Consensus 513 EaTS~LD~~TE~~i~~-~i~~~~~----~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 513 EATSALDSETEREILD-MIMDVMS----GRTVIMIVHRLDLL 549 (591)
T ss_pred CcccccchhhHHHHHH-HHHHhcC----CCeEEEEEecchhH
Confidence 9999999988765553 3333111 12335566666665
No 355
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.69 E-value=1.6e-16 Score=183.27 Aligned_cols=161 Identities=22% Similarity=0.217 Sum_probs=119.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|++++|++.+|+ +++|+||||+|||||+++|+|++.|+.|+|.+.+.++. ++++++|...+.
T Consensus 21 ~~il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~ 98 (648)
T PRK10535 21 VEVLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLL 98 (648)
T ss_pred eeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccC
Confidence 458999999999999 99999999999999999999999999999999987742 378999876543
Q ss_pred hhcc------cceeecCCC-CCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRLQ------VPIFEKGYE-KDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L~------v~l~~~~~~-~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+. ......+.. ......+.++++.++... .+..+..+|||++|++.|+|+|+ .+|+++|+ |||+
T Consensus 99 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~-----~~P~lLll-DEP~ 172 (648)
T PRK10535 99 SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALM-----NGGQVILA-DEPT 172 (648)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCC
Confidence 3221 111101111 111223344444443332 25667789999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.|||+..+ +.+.+.+..+.+. +.+.+++|+
T Consensus 173 ~gLD~~s~-~~l~~ll~~l~~~----g~tilivsH 202 (648)
T PRK10535 173 GALDSHSG-EEVMAILHQLRDR----GHTVIIVTH 202 (648)
T ss_pred CCCCHHHH-HHHHHHHHHHHhc----CCEEEEECC
Confidence 99999987 4555777776532 566777775
No 356
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.68 E-value=1.3e-16 Score=183.19 Aligned_cols=162 Identities=18% Similarity=0.178 Sum_probs=118.0
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcccccc------eeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTF------RSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt~------RigaveQl~~~~~~L 469 (621)
...+|+|+++.+++|+ +++|+|||||||||||+.|+|...+. .|+|.++|.+.. ++|++.|...+...+
T Consensus 37 ~~~iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 3568999999999999 99999999999999999999988764 799999998752 489999987554433
Q ss_pred cc----ceee--c-CCC---CCHHHHHHHHHHHHhhcCC-Ccccc------ccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 470 QV----PIFE--K-GYE---KDPAIVAKEAIQEATRNGS-DVVLV------DTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 470 ~v----~l~~--~-~~~---~d~~~ia~~al~~~~~~~~-d~vli------DtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+ .+.. . ... ......+.+.++.+++.+. |..+. .+|||+++|+.|+++|. .+|++++
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~-----~~p~vll 189 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL-----TDPPLLF 189 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHH-----cCCCEEE
Confidence 21 1110 0 001 1112334555555544333 44444 48999999999999999 9999998
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+ ||||+|||+.... .+.+.++.++.. +.++|+.+.
T Consensus 190 l-DEPtsgLD~~~~~-~l~~~L~~l~~~----g~tvi~~~h 224 (617)
T TIGR00955 190 C-DEPTSGLDSFMAY-SVVQVLKGLAQK----GKTIICTIH 224 (617)
T ss_pred e-eCCCcchhHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 8 9999999999875 455777777643 455555543
No 357
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.68 E-value=1.8e-16 Score=196.20 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=116.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh---------------------------------------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--------------------------------------- 441 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--------------------------------------- 441 (621)
.+|+++||++++|+ .++||||+||||||+++.|++++.|
T Consensus 1182 ~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1182 PIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred ccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999 9999999999999999999999998
Q ss_pred ---------------cCcEEEEcccccc---------eeeeeehhhhh-----hhhcccceeecCCCCCHHHHHHHHHHH
Q 007024 442 ---------------HKVSVMMAACDTF---------RSGAVEQLRTH-----ARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (621)
Q Consensus 442 ---------------~~GkV~I~~~Dt~---------RigaveQl~~~-----~~~L~v~l~~~~~~~d~~~ia~~al~~ 492 (621)
+.|+|.|+|.|+. ++|+|.|...+ .+++. +... ..... .+.+|++.
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~--~g~~--~at~e-eI~~A~k~ 1334 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKE--DATRE-DVKRACKF 1334 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHh--cCCC--CCCHH-HHHHHHHH
Confidence 5999999999872 39999998744 34432 2111 11222 23334433
Q ss_pred Hhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 493 ATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 493 ~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
+.. .++|..+. .+|||++||++|||||. .+|+++|| ||||++||+... +.+.+.|..+..
T Consensus 1335 A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALl-----r~p~ILLL-DEaTSaLD~~sE-~~I~~~L~~~~~- 1406 (1466)
T PTZ00265 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL-----REPKILLL-DEATSSLDSNSE-KLIEKTIVDIKD- 1406 (1466)
T ss_pred cCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHHH-HHHHHHHHHHhc-
Confidence 221 35665554 48999999999999999 99999999 999999999875 456677766632
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
..+.+.|++|+
T Consensus 1407 --~~~~TvIiIaH 1417 (1466)
T PTZ00265 1407 --KADKTIITIAH 1417 (1466)
T ss_pred --cCCCEEEEEec
Confidence 12466777664
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=8.4e-16 Score=147.75 Aligned_cols=183 Identities=20% Similarity=0.204 Sum_probs=133.9
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------c---eeeeeehhhh-----
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------F---RSGAVEQLRT----- 464 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------~---RigaveQl~~----- 464 (621)
.+.+++.|||.++.|+ .++|||.||||||||.++|+|++.|++|+|++++... | +|-.++|.+.
T Consensus 25 ~~~AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP 102 (267)
T COG4167 25 TVEAVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP 102 (267)
T ss_pred hhhcccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh
Confidence 3567788999999999 9999999999999999999999999999999998765 2 4888888762
Q ss_pred ---hhhhcccceeecCCCCCHH---HHHHHHHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 465 ---HARRLQVPIFEKGYEKDPA---IVAKEAIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 465 ---~~~~L~v~l~~~~~~~d~~---~ia~~al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
...++.-|+.. ...-++. ..+.+.+...++. ...+.+.-+|.+++||++|||+|. .+|.+||. ||
T Consensus 103 Rl~iGqiLd~PL~l-~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALI-----L~P~iIIa-De 175 (267)
T COG4167 103 RLRIGQILDFPLRL-NTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALI-----LRPKIIIA-DE 175 (267)
T ss_pred hhhhhhHhcchhhh-cccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHh-----cCCcEEEe-hh
Confidence 23344445432 2223333 3344445544432 124667778999999999999999 99999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++.+||...+.+.+|-.| .+.+ ..+|+-|.++ .+.|.+--++. .|+.+--|.-|
T Consensus 176 Al~~LD~smrsQl~NL~L-eLQe---k~GiSyiYV~------QhlG~iKHi~D----~viVM~EG~vv 229 (267)
T COG4167 176 ALASLDMSMRSQLINLML-ELQE---KQGISYIYVT------QHIGMIKHISD----QVLVMHEGEVV 229 (267)
T ss_pred hhhhccHHHHHHHHHHHH-HHHH---HhCceEEEEe------chhhHhhhhcc----cEEEEecCcee
Confidence 999999988776664333 3433 4588888876 46777665554 55555555544
No 359
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.67 E-value=2.8e-16 Score=181.54 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=109.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~~ 475 (621)
.+|++++|++++|+ +++|+|||||||||+++.|+|++++.+|+|.+.+. .+++++.|...+ .+++..+...
T Consensus 466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~--~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC--CcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 58999999999999 99999999999999999999999999999987542 358999997532 2333222110
Q ss_pred cC--CCCCHHHHHHHHHHHHhhcCC-------Cc---cccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 476 KG--YEKDPAIVAKEAIQEATRNGS-------DV---VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 476 ~~--~~~d~~~ia~~al~~~~~~~~-------d~---vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
.. ........+.++++.+...++ |. ....+|||++||+.|||+|. .+|+++|| ||||+++|+
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~-----~~p~illL-DEpts~LD~ 615 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFY-----HKPQFAIL-DECTSAVSV 615 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCH
Confidence 00 000111223444444333221 11 12468999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.... .+.+.+.. .+.+.|++|.
T Consensus 616 ~~~~-~l~~~l~~-------~~~tvI~isH 637 (659)
T TIGR00954 616 DVEG-YMYRLCRE-------FGITLFSVSH 637 (659)
T ss_pred HHHH-HHHHHHHH-------cCCEEEEEeC
Confidence 8763 34344432 2567777775
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.66 E-value=3e-16 Score=194.33 Aligned_cols=162 Identities=16% Similarity=0.264 Sum_probs=114.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc-cccc-------c--eeeeeehhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA-ACDT-------F--RSGAVEQLRTH---- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~-~~Dt-------~--RigaveQl~~~---- 465 (621)
..+|++++|.+++|+ +++|+|||||||||+++.|+|++.|+.|+|.+. +.|+ . ++|+|.|...+
T Consensus 398 ~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~T 475 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNS 475 (1466)
T ss_pred CceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhcc
Confidence 469999999999999 999999999999999999999999999999994 4554 1 38999997533
Q ss_pred -hhhcccceeec-C-------C--------------------------------------------CCCHHHHHHHHHHH
Q 007024 466 -ARRLQVPIFEK-G-------Y--------------------------------------------EKDPAIVAKEAIQE 492 (621)
Q Consensus 466 -~~~L~v~l~~~-~-------~--------------------------------------------~~d~~~ia~~al~~ 492 (621)
.+++....+.. . + .....+.+.++++.
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 33332211000 0 0 00001223334333
Q ss_pred Hhh--------cCCC----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 493 ATR--------NGSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 493 ~~~--------~~~d----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
+.. .+++ .....+||||+||+.|||+|. .+|+++|| ||||++||+... ..+.+.|..+...
T Consensus 556 ~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll-----~~P~ILlL-DEpTSaLD~~se-~~i~~~L~~~~~~ 628 (1466)
T PTZ00265 556 VLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII-----RNPKILIL-DEATSSLDNKSE-YLVQKTINNLKGN 628 (1466)
T ss_pred hCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHHH-HHHHHHHHHHhhc
Confidence 322 1222 234578999999999999999 99999999 999999999886 4555777766431
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
.+.+.|++|.
T Consensus 629 ---~g~TvIiIsH 638 (1466)
T PTZ00265 629 ---ENRITIIIAH 638 (1466)
T ss_pred ---CCCEEEEEeC
Confidence 2456777764
No 361
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=3.4e-16 Score=184.67 Aligned_cols=179 Identities=18% Similarity=0.221 Sum_probs=129.7
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L 469 (621)
.+.||+|+++++..|+ .+|||||+||||||.+..|-.+|.|..|.|.|++.|+. .+|.|.|.+++...-
T Consensus 1002 ~~~Il~~l~l~i~~Gq--TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQ--TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGT 1079 (1228)
T ss_pred CchhhcCCcEEecCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhccc
Confidence 4568999999999999 99999999999999999999999999999999999872 399999988654322
Q ss_pred ---ccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 470 ---QVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 470 ---~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
|+.+ . .......+ +.+|.+.+.. .+||..+. .+||||+||.+|||||. .+|.++||
T Consensus 1080 IrENI~Y-G-~~~vs~~e-Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil-----RnPkILLL- 1150 (1228)
T KOG0055|consen 1080 IRENIAY-G-SEEVSEEE-IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL-----RNPKILLL- 1150 (1228)
T ss_pred HHHHHhc-c-CCCCCHHH-HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH-----cCCCeeee-
Confidence 2221 1 01112222 3344443322 46776664 57999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||+|++||..+- +...++|..... +.|.|++. ++.-.+- ..=-|.++-+|.-++
T Consensus 1151 DEATSALDseSE-rvVQeALd~a~~-----gRT~IvIA------HRLSTIq-----naD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1151 DEATSALDSESE-RVVQEALDRAME-----GRTTIVIA------HRLSTIQ-----NADVIAVLKNGKVVE 1204 (1228)
T ss_pred eccchhhhhhhH-HHHHHHHHHhhc-----CCcEEEEe------cchhhhh-----cCCEEEEEECCEEEe
Confidence 999999999874 677788877654 34444443 2222222 222567777777653
No 362
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=9.6e-17 Score=157.84 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=130.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---------eeeeehhh-------
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLR------- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---------igaveQl~------- 463 (621)
..+|+++++++.+|+ ++.++|.|||||||+++.|+|.+.+++|+|.|++.|+.| ++-|+|.+
T Consensus 19 k~~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 19 KRALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred HHHHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 468899999999999 999999999999999999999999999999999999843 55567765
Q ss_pred -hhhhhcccceee---cCCCC--CH--HHHHHHHHHHHh--h-cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 464 -THARRLQVPIFE---KGYEK--DP--AIVAKEAIQEAT--R-NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 464 -~~~~~L~v~l~~---~~~~~--d~--~~ia~~al~~~~--~-~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+..+++-+.... +++.. .. .....+-+..+. + ...+..+.=+|||++|-+.|+.+.. ..|++++
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl-----~~pkiLL 171 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATL-----HPPKILL 171 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhc-----CCCcEEE
Confidence 444554332211 11111 10 111111122211 1 1123445556999999999988888 8888888
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCccc
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLK 608 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~ 608 (621)
| ||-|++|||......+ +.-..+. ....++.+++|.--+- +..+|...+.+-.|+.|-|+.
T Consensus 172 L-DEHTAALDPkta~~vm-~lT~kiV---~~~klTtlMVTHnm~~----------Al~yG~RlImLh~G~IvlDv~ 232 (263)
T COG1101 172 L-DEHTAALDPKTAEFVM-ELTAKIV---EEHKLTTLMVTHNMED----------ALDYGNRLIMLHSGKIVLDVT 232 (263)
T ss_pred e-cchhhcCCcchHHHHH-HHHHHHH---HhcCCceEEEeccHHH----------HHhhCCeEEEEeCCeEEEEcc
Confidence 8 9999999998764333 3334443 3458899999864332 556788999999999886643
No 363
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4e-16 Score=170.26 Aligned_cols=181 Identities=20% Similarity=0.176 Sum_probs=124.8
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhh--
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLR-- 463 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~-- 463 (621)
-|..+..+|+|+||++.+|| .++|+|++||||||++..|+|.+.|++|+|.+.+.++. .++.+.|-.
T Consensus 346 y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 346 YPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred cCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 36667789999999999999 99999999999999999999999999999999998873 245555543
Q ss_pred ---hhhhhcccceeecCCCCCHHHHHHHHHHHHhhc--------CCCcccc----ccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 464 ---THARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 464 ---~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--------~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
++.+|+.+. ... ... +...++++.+++. +++..+. -+|||++||.+|||+|. ++.
T Consensus 424 F~~Tlr~NL~lA---~~~-AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL-----~da 493 (573)
T COG4987 424 FSGTLRDNLRLA---NPD-ASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL-----HDA 493 (573)
T ss_pred HHHHHHHHHhhc---CCC-CCH-HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH-----cCC
Confidence 333343221 111 111 2223444443322 2233333 36999999999999999 899
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+++|| ||||.|||+....+.+ ..+.+.. .+.+.+++|.-=. | + +.--.|.++-+|+.+.
T Consensus 494 pl~lL-DEPTegLD~~TE~~vL----~ll~~~~--~~kTll~vTHrL~-----~--l----e~~drIivl~~Gkiie 552 (573)
T COG4987 494 PLWLL-DEPTEGLDPITERQVL----ALLFEHA--EGKTLLMVTHRLR-----G--L----ERMDRIIVLDNGKIIE 552 (573)
T ss_pred CeEEe-cCCcccCChhhHHHHH----HHHHHHh--cCCeEEEEecccc-----c--H----hhcCEEEEEECCeeee
Confidence 99999 9999999999875444 3332221 2667888875211 1 1 1222678888887764
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=174.59 Aligned_cols=157 Identities=24% Similarity=0.201 Sum_probs=111.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc-------
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV------- 471 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v------- 471 (621)
...+|+++++.+.+|+ .|+|||+||+||||||++|+|.+.|+.|+|..... .|+|++.|.........+
T Consensus 15 ~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~~~tv~~~v~~~ 90 (530)
T COG0488 15 DRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDPEKTVLDYVIEG 90 (530)
T ss_pred CceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCCCccHHHHHHhh
Confidence 4568999999999999 99999999999999999999999999999998764 589999997644322100
Q ss_pred --ceee------cCC----------------------CCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHh
Q 007024 472 --PIFE------KGY----------------------EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK 521 (621)
Q Consensus 472 --~l~~------~~~----------------------~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~ 521 (621)
++.. ..+ +-+....+..++.-++....+..+-++|||++.|+.||++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~- 169 (530)
T COG0488 91 FGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL- 169 (530)
T ss_pred hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHh-
Confidence 0000 000 000011112222212222225677889999999999999999
Q ss_pred hhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 522 LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 522 l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+||++|| ||||+.||.... ..+...|..+ .+ +.||+|.
T Consensus 170 ----~~pDlLLL-DEPTNHLD~~~i-~WLe~~L~~~------~g-tviiVSH 208 (530)
T COG0488 170 ----EEPDLLLL-DEPTNHLDLESI-EWLEDYLKRY------PG-TVIVVSH 208 (530)
T ss_pred ----cCCCEEEE-cCCCcccCHHHH-HHHHHHHHhC------CC-cEEEEeC
Confidence 99999999 999999998764 4555555433 24 6788775
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.66 E-value=6.1e-16 Score=161.35 Aligned_cols=150 Identities=34% Similarity=0.485 Sum_probs=113.6
Q ss_pred chHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccccccccC
Q 007024 334 DLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQR 413 (621)
Q Consensus 334 ~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~G 413 (621)
...|.+..++++|++.||+.+++++|++.+.... + ...+...+.+.|.+.+..... ...+ ...
T Consensus 131 ~~~~~l~~l~~~L~~~gv~~~la~~L~~~l~~~~---------~-~~~~~~~~~~~l~~~l~~~~~-----~~~~-~~~- 193 (282)
T TIGR03499 131 QRDPEGAKLLERLLRAGVSPELARELLEKLPERA---------D-AEDAWRWLREALEKMLPVKPE-----EDEI-LEQ- 193 (282)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHHHHHHHHhhccC---------C-HHHHHHHHHHHHHHHhccCCc-----cccc-cCC-
Confidence 4567899999999999999999999999986421 1 233456677778777741110 0111 123
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhc-C-cEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQH-K-VSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~-~-GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~ 491 (621)
+++++|+||+|||||||+.+||.++... + .+|.++++|+||+|+++|+..|++.+++++... .++..+ .+++.
T Consensus 194 -~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~---~~~~~l-~~~l~ 268 (282)
T TIGR03499 194 -GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVA---RDPKEL-RKALD 268 (282)
T ss_pred -CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceecc---CCHHHH-HHHHH
Confidence 3499999999999999999999988765 4 699999999999999999999999999988643 233333 34444
Q ss_pred HHhhcCCCccccccch
Q 007024 492 EATRNGSDVVLVDTAG 507 (621)
Q Consensus 492 ~~~~~~~d~vliDtSG 507 (621)
.+ .++|+++|||+|
T Consensus 269 ~~--~~~d~vliDt~G 282 (282)
T TIGR03499 269 RL--RDKDLILIDTAG 282 (282)
T ss_pred Hc--cCCCEEEEeCCC
Confidence 33 468999999987
No 366
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=3.1e-16 Score=179.38 Aligned_cols=156 Identities=20% Similarity=0.228 Sum_probs=119.8
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh---cCcEEEEccccc------ceeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ---HKVSVMMAACDT------FRSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~---~~GkV~I~~~Dt------~RigaveQl~~~~~~L 469 (621)
...+|++|+....+|+ +.||+||+||||||||+.|||.... .+|+|+++|... ..+|+|.|...+...+
T Consensus 42 ~k~iL~~vsg~~~~Ge--l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE--LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred cceeeeCcEEEEecCe--EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 4679999999999999 9999999999999999999998864 689999999322 2499999988655555
Q ss_pred ccc----eeec---C---CCCCHHHHHHHHHHHHhhcCCC-ccccc-----cchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 470 QVP----IFEK---G---YEKDPAIVAKEAIQEATRNGSD-VVLVD-----TAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 470 ~v~----l~~~---~---~~~d~~~ia~~al~~~~~~~~d-~vliD-----tSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
-|. +... . .......++.+.+..+++.... .++.+ .|||+++|+.+|.+|. .+|.++++
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell-----~~P~iLfl 194 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELL-----TDPSILFL 194 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHH-----cCCCEEEe
Confidence 221 1111 1 1122335566777776666553 34433 8999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNP 563 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~ 563 (621)
||||+|||.....+.+ +.|+.+++.++.
T Consensus 195 -DEPTSGLDS~sA~~vv-~~Lk~lA~~grt 222 (613)
T KOG0061|consen 195 -DEPTSGLDSFSALQVV-QLLKRLARSGRT 222 (613)
T ss_pred -cCCCCCcchhhHHHHH-HHHHHHHhCCCE
Confidence 9999999999876555 889999876543
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.65 E-value=2.8e-16 Score=194.08 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=116.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh---hcCcEEEEccccc---c--eeeeeehhhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL---QHKVSVMMAACDT---F--RSGAVEQLRTHA----- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~---~~~GkV~I~~~Dt---~--RigaveQl~~~~----- 466 (621)
..+|++||+.+.+|+ +++|+|||||||||||+.|+|++. +.+|+|.++|.++ + ++|+++|...+.
T Consensus 776 ~~iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 776 RVILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred cEeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCH
Confidence 468999999999999 999999999999999999999987 6789999999775 2 489999975332
Q ss_pred -hhcccceeec-CCCCCH---HHHHHHHHHHHhhcCC-Ccccc----ccchhHHhHHHHHHHHHhhhhcCCCc-EEEEEe
Q 007024 467 -RRLQVPIFEK-GYEKDP---AIVAKEAIQEATRNGS-DVVLV----DTAGRMQDNEPLMRALSKLIYLNNPD-LVLFVG 535 (621)
Q Consensus 467 -~~L~v~l~~~-~~~~d~---~~ia~~al~~~~~~~~-d~vli----DtSGg~qqr~~LaraL~~l~~~~~Pd-lILLVD 535 (621)
+++......+ ...... ...+.++++.+++.++ |..+. .+||||+||+.|+++|+ .+|+ +++| |
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~-----~~P~~iLlL-D 927 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV-----AKPKLLLFL-D 927 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH-----cCCCeEEEE-c
Confidence 2222111001 001111 2334556666555443 44444 69999999999999999 9998 5666 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+|||+.... .+.+.|+.++.. +.++|+++.
T Consensus 928 EPTsgLD~~~~~-~i~~~L~~la~~----g~tvI~t~H 960 (1394)
T TIGR00956 928 EPTSGLDSQTAW-SICKLMRKLADH----GQAILCTIH 960 (1394)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHc----CCEEEEEec
Confidence 999999998864 555788887654 445555543
No 368
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.65 E-value=1.5e-15 Score=160.61 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=135.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------------ceeeeeehhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------------FRSGAVEQLR---- 463 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------------~RigaveQl~---- 463 (621)
..++++||+++..|+ .++|||.+||||||+-..|.+++.+. |.|.+.|.++ .|+-.|+|.+
T Consensus 300 ~~AVd~isl~L~~gq--TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQ--TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCC--eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 567899999999999 99999999999999999999998877 9999999887 2478888876
Q ss_pred ----hhhhhcccceeecCCCCCHHH---HHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 464 ----THARRLQVPIFEKGYEKDPAI---VAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 464 ----~~~~~L~v~l~~~~~~~d~~~---ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+..++..-.+.........++ .+.+++..+++.. .+..+...|||++||.+|||+|. .+|.+|+|
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli-----LkP~~i~L- 450 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI-----LKPELILL- 450 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh-----cCCcEEEe-
Confidence 223333212222222223333 3344444443322 24778999999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||++||-.-|.+.+ +.|+++.+ .++++-++++. |. ..+- ...--|+.+-+|+.|+
T Consensus 451 DEPTSALD~SVQaQvv-~LLr~LQ~---k~~LsYLFISH-DL-----~Vvr----Al~~~viVm~~GkiVE 507 (534)
T COG4172 451 DEPTSALDRSVQAQVL-DLLRDLQQ---KHGLSYLFISH-DL-----AVVR----ALCHRVIVMRDGKIVE 507 (534)
T ss_pred cCCchHhhHHHHHHHH-HHHHHHHH---HhCCeEEEEec-cH-----HHHH----HhhceEEEEeCCEEee
Confidence 9999999999887666 67777764 46888888875 32 2333 3344788888998874
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.65 E-value=5.8e-16 Score=167.80 Aligned_cols=162 Identities=22% Similarity=0.236 Sum_probs=123.0
Q ss_pred cCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhh-
Q 007024 394 LTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLR- 463 (621)
Q Consensus 394 l~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~- 463 (621)
..|....++|++|+|.+..|+ .++||||+|||||||.+.|.|..+|.+|.|.+++.|.+ .+||.+|.-
T Consensus 343 ~PPg~~~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 343 APPGQKKPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred cCCCCCCcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 357777899999999999999 99999999999999999999999999999999999984 389998864
Q ss_pred ----hhhhhcccceeecCCCCCHHHHHHHH-----HHHH--hhcCCCccccc----cchhHHhHHHHHHHHHhhhhcCCC
Q 007024 464 ----THARRLQVPIFEKGYEKDPAIVAKEA-----IQEA--TRNGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 464 ----~~~~~L~v~l~~~~~~~d~~~ia~~a-----l~~~--~~~~~d~vliD----tSGg~qqr~~LaraL~~l~~~~~P 528 (621)
+.++|. .-| ....|+..+...+ -+.. .-.+||..+.| +|||++||..|||+|- .+|
T Consensus 421 LF~GTIaeNI--aRf--~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY-----G~P 491 (580)
T COG4618 421 LFDGTIAENI--ARF--GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY-----GDP 491 (580)
T ss_pred ecCCcHHHHH--Hhc--cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc-----CCC
Confidence 334332 111 1123443332221 1111 12478877765 5999999999999999 999
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
.+++| |||-++||..-. ..+.+++..+.. .+.+.|++|
T Consensus 492 ~lvVL-DEPNsNLD~~GE-~AL~~Ai~~~k~----rG~~vvvia 529 (580)
T COG4618 492 FLVVL-DEPNSNLDSEGE-AALAAAILAAKA----RGGTVVVIA 529 (580)
T ss_pred cEEEe-cCCCCCcchhHH-HHHHHHHHHHHH----cCCEEEEEe
Confidence 99999 999999998764 455566666654 466777766
No 370
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.65 E-value=7.4e-16 Score=192.15 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=128.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|+||||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++++|...+ .
T Consensus 1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 48999999999999 99999999999999999999999999999999999972 49999998744 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+|+. .+. ..+..+ ..++++.+.. .++|..+. .+|||++|++.|||+|. .+|+++||
T Consensus 1378 ~NLd--p~~---~~sdee-i~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL-----r~~~ILiL- 1445 (1522)
T TIGR00957 1378 MNLD--PFS---QYSDEE-VWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL-----RKTKILVL- 1445 (1522)
T ss_pred HHcC--ccc---CCCHHH-HHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 3432 111 112222 3344444322 35666664 38999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|.... ..+.+.++...+ +.|+|+++. +...+.. -=.|+.+..|+-++
T Consensus 1446 DEaTSalD~~Te-~~Iq~~l~~~~~-----~~TvI~IAH------Rl~ti~~-----~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1446 DEATAAVDLETD-NLIQSTIRTQFE-----DCTVLTIAH------RLNTIMD-----YTRVIVLDKGEVAE 1499 (1522)
T ss_pred ECCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEec------CHHHHHh-----CCEEEEEECCEEEE
Confidence 999999999875 455566665432 456666553 3322222 23677788888763
No 371
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.65 E-value=1.2e-15 Score=161.36 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=138.4
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEccccc-------------ceee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDT-------------FRSG 457 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt-------------~Rig 457 (621)
+.....++++|||.+..|| .++|||.+|||||-+...|.++|... +|+|.+.|.|+ -||+
T Consensus 19 ~~~~~~aVk~isf~i~~GE--tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~ 96 (534)
T COG4172 19 EGGTVEAVKGISFDIEAGE--TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIG 96 (534)
T ss_pred CCcceEeeccceeeecCCC--EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceE
Confidence 4456789999999999999 99999999999999999999998752 68999999997 2599
Q ss_pred eeehhh--------hhhhhcc--cceeecCCCCCHHHHHHHHHHHHhhcC----CCccccccchhHHhHHHHHHHHHhhh
Q 007024 458 AVEQLR--------THARRLQ--VPIFEKGYEKDPAIVAKEAIQEATRNG----SDVVLVDTAGRMQDNEPLMRALSKLI 523 (621)
Q Consensus 458 aveQl~--------~~~~~L~--v~l~~~~~~~d~~~ia~~al~~~~~~~----~d~vliDtSGg~qqr~~LaraL~~l~ 523 (621)
.++|.+ +..+.+. +.++.......+...+.+.++..+... ++..+..+|||++||+.||.||+
T Consensus 97 MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa--- 173 (534)
T COG4172 97 MIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA--- 173 (534)
T ss_pred EEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc---
Confidence 999975 2222221 112111112222233333444433322 35678899999999999999999
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
++|+++|. ||||++||..-|++.+ +.|+++.. ..++..+++|. ..|.+-.++. .|..+..|+-
T Consensus 174 --n~P~lLIA-DEPTTALDVtvQaQIL-~Ll~~Lq~---~~gMa~lfITH------DL~iVr~~AD----rV~VM~~G~i 236 (534)
T COG4172 174 --NEPDLLIA-DEPTTALDVTVQAQIL-DLLKELQA---ELGMAILFITH------DLGIVRKFAD----RVYVMQHGEI 236 (534)
T ss_pred --CCCCeEee-cCCcchhhhhhHHHHH-HHHHHHHH---HhCcEEEEEec------cHHHHHHhhh----hEEEEeccEE
Confidence 99999999 9999999999998666 66777765 45888999884 3444444444 7888888887
Q ss_pred CC
Q 007024 604 YT 605 (621)
Q Consensus 604 v~ 605 (621)
++
T Consensus 237 vE 238 (534)
T COG4172 237 VE 238 (534)
T ss_pred ee
Confidence 64
No 372
>PLN03232 ABC transporter C family member; Provisional
Probab=99.65 E-value=7e-16 Score=192.07 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=126.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|+|+||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++++++|...+ .
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 48999999999999 99999999999999999999999999999999999872 48999998743 4
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+|+. .+. . .+.. .+.++++.+.. .++|..+. .+|||++|++.|||+|. .+|+++||
T Consensus 1328 ~NL~--~~~-~--~sde-ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL-----r~~~ILIL- 1395 (1495)
T PLN03232 1328 FNID--PFS-E--HNDA-DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL-----RRSKILVL- 1395 (1495)
T ss_pred HHcC--CCC-C--CCHH-HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 4442 221 1 1222 23344443322 24554443 58999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|.... +.+.+.++...+ +.|.|++++ +.-.+.. .=.|+.+..|+-++
T Consensus 1396 DEATSaLD~~Te-~~Iq~~L~~~~~-----~~TvI~IAH------Rl~ti~~-----~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1396 DEATASVDVRTD-SLIQRTIREEFK-----SCTMLVIAH------RLNTIID-----CDKILVLSSGQVLE 1449 (1495)
T ss_pred ECCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEeC------CHHHHHh-----CCEEEEEECCEEEE
Confidence 999999999875 455666665432 456666553 3322222 23677777887663
No 373
>PLN03130 ABC transporter C family member; Provisional
Probab=99.64 E-value=7.7e-16 Score=192.34 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=126.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|+|+||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. +++++.|...+ .
T Consensus 1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999999872 49999998744 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+++. .+. . .+..+ +.++++.+.. .++|..+. .+|||++|++.|||+|. .+|+++||
T Consensus 1331 eNLd--~~~-~--~tdee-i~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL-----r~p~ILIL- 1398 (1622)
T PLN03130 1331 FNLD--PFN-E--HNDAD-LWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL-----RRSKILVL- 1398 (1622)
T ss_pred HHhC--cCC-C--CCHHH-HHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 3432 221 1 12222 3344443322 35565553 58999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|.... ..+.+.++...+ +.+.|++++ +.-.+.. .=.|+.+..|+-+.
T Consensus 1399 DEATSaLD~~Te-~~Iq~~I~~~~~-----~~TvI~IAH------RL~tI~~-----~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1399 DEATAAVDVRTD-ALIQKTIREEFK-----SCTMLIIAH------RLNTIID-----CDRILVLDAGRVVE 1452 (1622)
T ss_pred ECCCCCCCHHHH-HHHHHHHHHHCC-----CCEEEEEeC------ChHHHHh-----CCEEEEEECCEEEE
Confidence 999999999875 455666665532 455666553 3322222 23677777777653
No 374
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=9.7e-16 Score=143.23 Aligned_cols=161 Identities=20% Similarity=0.190 Sum_probs=116.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEccccc-------ceeeeeehhhhhhhhcc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT-------FRSGAVEQLRTHARRLQ 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt-------~RigaveQl~~~~~~L~ 470 (621)
-+|-+|++++.+|+ |+.|+||+||||||++.-++|.+.+. .|++.+++.++ ..+|..+|..-+...++
T Consensus 16 cLLa~~n~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphls 93 (213)
T COG4136 16 CLLANVNFTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLS 93 (213)
T ss_pred eEEEeeeEEecCCc--EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeecccccccccc
Confidence 46788999999999 99999999999999999999999875 79999998876 24999999886666664
Q ss_pred cc---eeec---CCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 VP---IFEK---GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 v~---l~~~---~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
|. ++.. ..+......+..+++...+.++ +.-+-.+|||++-|++|+|+|. ..|..+++ |||++.||.
T Consensus 94 Vg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Ll-----a~Pk~lLL-DEPFS~LD~ 167 (213)
T COG4136 94 VGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALL-----AQPKALLL-DEPFSRLDV 167 (213)
T ss_pred cccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHH-----hCcceeee-CCchhHHHH
Confidence 31 1111 1122222445566666655554 5666677999999999999999 99999999 999999997
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.-+ ..|++.+-.-. +..+|-.+.+|.
T Consensus 168 ALR-~qfR~wVFs~~---r~agiPtv~VTH 193 (213)
T COG4136 168 ALR-DQFRQWVFSEV---RAAGIPTVQVTH 193 (213)
T ss_pred HHH-HHHHHHHHHHH---HhcCCCeEEEec
Confidence 643 44444331111 223555555554
No 375
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.64 E-value=1.4e-15 Score=188.01 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=116.3
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH----hhcCcEEEEccccc------ce--eeeeehhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACDT------FR--SGAVEQLRTHA 466 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L----~~~~GkV~I~~~Dt------~R--igaveQl~~~~ 466 (621)
...+|+|+|+.+++|+ +++|+|||||||||||+.|+|.+ .+..|+|.+.|.+. +| ++++.|...+.
T Consensus 73 ~~~iL~~vs~~i~~Ge--~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGE--LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred cceeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 4569999999999999 99999999999999999999986 46899999998764 33 89999976444
Q ss_pred hhc------ccceeecC---C--CCCHHH----HHHHHHHHHhhcCC-Ccc-----ccccchhHHhHHHHHHHHHhhhhc
Q 007024 467 RRL------QVPIFEKG---Y--EKDPAI----VAKEAIQEATRNGS-DVV-----LVDTAGRMQDNEPLMRALSKLIYL 525 (621)
Q Consensus 467 ~~L------~v~l~~~~---~--~~d~~~----ia~~al~~~~~~~~-d~v-----liDtSGg~qqr~~LaraL~~l~~~ 525 (621)
..+ ......+. . .....+ +...+++.+++.+. +.. +..+||||+||+.|+++|.
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~----- 225 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASL----- 225 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHH-----
Confidence 333 21111000 0 111211 12334555554433 333 3468999999999999999
Q ss_pred CCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 526 NNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 526 ~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
.+|+++++ ||||+|||+..+. .+.+.|+.+++. .+.++++.+
T Consensus 226 ~~p~vlll-DEPTsgLD~~~~~-~i~~~L~~la~~---~g~tvii~~ 267 (1394)
T TIGR00956 226 GGAKIQCW-DNATRGLDSATAL-EFIRALKTSANI---LDTTPLVAI 267 (1394)
T ss_pred hCCCEEEE-eCCCCCcCHHHHH-HHHHHHHHHHHh---cCCEEEEEe
Confidence 99999998 9999999999875 455788888753 244555554
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.63 E-value=6.7e-16 Score=190.70 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=116.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEccccc----c--eeeeeehhhhhhhhc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDT----F--RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~Dt----~--RigaveQl~~~~~~L-- 469 (621)
..+|++||+.+.+|+ +++|+|||||||||||+.|+|...+ ..|+|.+.|.+. + ++|+++|...+...+
T Consensus 893 ~~iL~~vs~~i~~Ge--l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 893 LQLLREVTGAFRPGV--LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred ceEeeCcEEEEECCe--EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 468999999999999 9999999999999999999998753 579999998654 2 379999976443332
Q ss_pred ----ccceeecC-CCCCHH---HHHHHHHHHHhhcCC-Cccc-----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 470 ----QVPIFEKG-YEKDPA---IVAKEAIQEATRNGS-DVVL-----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 470 ----~v~l~~~~-~~~d~~---~ia~~al~~~~~~~~-d~vl-----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
......+. ...+.. ..+.+.++.+++.++ +..+ -.+||||+||+.|+++|+ .+|++++| |
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~-----~~P~lL~L-D 1044 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELV-----ANPSIIFM-D 1044 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHh-----hCCCEEEE-e
Confidence 21111110 011111 234556665555443 3333 368999999999999999 99999888 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|||+|||+..+. .+.+.|+.+++. +.++|+++.
T Consensus 1045 EPTsgLD~~~a~-~v~~~L~~l~~~----g~tVI~t~H 1077 (1470)
T PLN03140 1045 EPTSGLDARAAA-IVMRTVRNTVDT----GRTVVCTIH 1077 (1470)
T ss_pred CCCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 999999998864 555788888754 445555553
No 377
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-15 Score=150.42 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=124.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccc--------e--eeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF--------R--SGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~--------R--igaveQl~~~~~ 467 (621)
..||++|+++++.|+ +.+|+||||||||||...|+|. |..++|+|++.|.|+. | +...+|.+.-..
T Consensus 17 keILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 17 KEILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred hhhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence 478999999999999 9999999999999999999995 5789999999999972 2 444556542111
Q ss_pred ------hcccceeecCCC----CCHHHHHHHHHHHHhhcC-C-C-ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 468 ------RLQVPIFEKGYE----KDPAIVAKEAIQEATRNG-S-D-VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 468 ------~L~v~l~~~~~~----~d~~~ia~~al~~~~~~~-~-d-~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.|.......... .+....++++++.+.+.. + + .+=.-.|||+++|..|++.+. .+|+++||
T Consensus 95 GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~-----lePkl~IL- 168 (251)
T COG0396 95 GVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL-----LEPKLAIL- 168 (251)
T ss_pred CeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh-----cCCCEEEe-
Confidence 111100000000 112233344444433322 1 1 233456999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|||-+|+|..+ ++...+.+..+... +.+.+|+|....+ +.. ..---+..+..|+-+.
T Consensus 169 DE~DSGLDIda-lk~V~~~i~~lr~~----~~~~liITHy~rl-------l~~--i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 169 DEPDSGLDIDA-LKIVAEGINALREE----GRGVLIITHYQRL-------LDY--IKPDKVHVLYDGRIVK 225 (251)
T ss_pred cCCCcCccHHH-HHHHHHHHHHHhcC----CCeEEEEecHHHH-------Hhh--cCCCEEEEEECCEEEe
Confidence 99999999765 56666777777654 6778998875544 222 2223466667777663
No 378
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.62 E-value=2.9e-16 Score=186.58 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=128.1
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhc--
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L-- 469 (621)
+++++++.+++|+ ++++.|||||||||++++|.|..+|++|++.+.|.|.- .+|+.+|...+.+.+
T Consensus 580 Av~~ls~~V~~ge--cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~ 657 (885)
T KOG0059|consen 580 AVRGLSFAVPPGE--CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTG 657 (885)
T ss_pred hhcceEEEecCCc--eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccH
Confidence 7899999999999 99999999999999999999999999999999888762 289999986554444
Q ss_pred --ccceeecCCC---CCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 470 --QVPIFEKGYE---KDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 470 --~v~l~~~~~~---~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
.+.++.+..+ .|....+...++.+++.++ +....-+|||++++..++-+|. .+|.+|+| |||++|+||
T Consensus 658 rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aiali-----g~p~vi~L-DEPstGmDP 731 (885)
T KOG0059|consen 658 REHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALI-----GDPSVILL-DEPSTGLDP 731 (885)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHh-----cCCCEEEe-cCCCCCCCH
Confidence 2233332222 3444555555555555444 5556677999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhH
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGA 583 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~ 583 (621)
..+ +.+..++..+.+.++.+.+|.|-++.++-.|++++.
T Consensus 732 ~ar-r~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aI 770 (885)
T KOG0059|consen 732 KAR-RHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAI 770 (885)
T ss_pred HHH-HHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhhe
Confidence 887 455678888776543333344444444444444433
No 379
>PLN03140 ABC transporter G family member; Provisional
Probab=99.62 E-value=7.5e-16 Score=190.30 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=117.8
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEccccc------ceeeeeehhhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT------FRSGAVEQLRTHARR 468 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt------~RigaveQl~~~~~~ 468 (621)
....+|+|+|+.+++|+ +++|+|||||||||||+.|+|.+.++ .|+|.++|.+. .++|++.|...+...
T Consensus 176 ~~~~IL~~vs~~i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 176 TKLTILKDASGIIKPSR--MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred ccceeccCCeEEEeCCe--EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 35679999999999999 99999999999999999999999887 89999998764 248999997644333
Q ss_pred c------ccceeecCCC-----------C--------CHH----------------HHHHHHHHHHhhcCC------Ccc
Q 007024 469 L------QVPIFEKGYE-----------K--------DPA----------------IVAKEAIQEATRNGS------DVV 501 (621)
Q Consensus 469 L------~v~l~~~~~~-----------~--------d~~----------------~ia~~al~~~~~~~~------d~v 501 (621)
+ .......+.+ . +.. ..+..+++.+++.+. +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 2 1111000000 0 000 112334555544432 223
Q ss_pred ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 502 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 502 liDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+-.+||||+||+.++++|. .+|+++++ ||||+|||+.... .+.+.|+.+++. .+.++++.+.
T Consensus 334 ~rglSGGerkRVsia~aL~-----~~p~vlll-DEPTsGLDs~t~~-~i~~~Lr~la~~---~g~Tviis~H 395 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIV-----GPTKTLFM-DEISTGLDSSTTY-QIVKCLQQIVHL---TEATVLMSLL 395 (1470)
T ss_pred ccCCCcccceeeeehhhhc-----CCCcEEEE-eCCCcCccHHHHH-HHHHHHHHHHHh---cCCEEEEEec
Confidence 4578999999999999999 99999999 9999999999875 444778777653 2456666553
No 380
>PTZ00243 ABC transporter; Provisional
Probab=99.62 E-value=2.1e-15 Score=188.05 Aligned_cols=173 Identities=17% Similarity=0.129 Sum_probs=125.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|+||||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+. ++|+++|...+ .
T Consensus 1324 ~vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1324 LVLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred ceeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999999872 48999998744 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCC-CcEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNN-PDLVLF 533 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~-PdlILL 533 (621)
+|+ ..+. . .+.. .+.++++.+.+ .++|..+. .+|||++|++.|||+|. .+ |+++||
T Consensus 1402 eNI--dp~~-~--~sde-eI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL-----~~~~~ILlL 1470 (1560)
T PTZ00243 1402 QNV--DPFL-E--ASSA-EVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALL-----KKGSGFILM 1470 (1560)
T ss_pred HHh--Cccc-C--CCHH-HHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHh-----cCCCCEEEE
Confidence 443 2221 1 1222 23444444322 24565553 48999999999999999 75 788888
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|.... ..+.+.|....+ +.|+|+++. +...+.. -=.|+.+..|+-+
T Consensus 1471 -DEATSaLD~~te-~~Iq~~L~~~~~-----~~TvI~IAH------Rl~ti~~-----~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1471 -DEATANIDPALD-RQIQATVMSAFS-----AYTVITIAH------RLHTVAQ-----YDKIIVMDHGAVA 1523 (1560)
T ss_pred -eCCCccCCHHHH-HHHHHHHHHHCC-----CCEEEEEec------cHHHHHh-----CCEEEEEECCEEE
Confidence 999999999875 345566655432 456666553 3322221 2367778888765
No 381
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=3e-15 Score=173.95 Aligned_cols=177 Identities=18% Similarity=0.141 Sum_probs=110.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH---hhcCcEEEEcccccc----------------e-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVMMAACDTF----------------R----- 455 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L---~~~~GkV~I~~~Dt~----------------R----- 455 (621)
..+|+++||++.+|+ +++|||||||||||||++|+|.. .|.+|+|.+...+.. +
T Consensus 190 ~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~ 267 (718)
T PLN03073 190 RDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLE 267 (718)
T ss_pred CEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHH
Confidence 358999999999999 99999999999999999999854 578889986544321 0
Q ss_pred --eeeeehhhhhhh-----hcccceeecCCCCC--------------------HHHHHHHHHHHHhhc--CCCccccccc
Q 007024 456 --SGAVEQLRTHAR-----RLQVPIFEKGYEKD--------------------PAIVAKEAIQEATRN--GSDVVLVDTA 506 (621)
Q Consensus 456 --igaveQl~~~~~-----~L~v~l~~~~~~~d--------------------~~~ia~~al~~~~~~--~~d~vliDtS 506 (621)
+++++|...... ....+.. .+...+ ....+..++..++.. ..+..+.++|
T Consensus 268 ~~~~~~~q~~~l~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LS 346 (718)
T PLN03073 268 EEAQLVAQQRELEFETETGKGKGANK-DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFS 346 (718)
T ss_pred HHHHHHHHHHHhhhcccccccccccc-cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCC
Confidence 122222211000 0000000 000111 111122222222221 1245567899
Q ss_pred hhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHH
Q 007024 507 GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALS 586 (621)
Q Consensus 507 Gg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls 586 (621)
||+++++.|+++|. .+|+++|| ||||++||+... ..+.+.|..+ +.++||+|. |. .
T Consensus 347 gG~k~rv~LA~aL~-----~~p~lLlL-DEPt~~LD~~~~-~~l~~~L~~~-------~~tviivsH-d~-----~---- 402 (718)
T PLN03073 347 GGWRMRIALARALF-----IEPDLLLL-DEPTNHLDLHAV-LWLETYLLKW-------PKTFIVVSH-AR-----E---- 402 (718)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEE-ECCCCCCCHHHH-HHHHHHHHHc-------CCEEEEEEC-CH-----H----
Confidence 99999999999999 99999999 999999999886 3444555543 456777664 21 1
Q ss_pred hHHHhCCcEEEEecCCC
Q 007024 587 MVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 587 ~~~~~g~PI~fvg~Gq~ 603 (621)
.+....-.|+.+-.|+-
T Consensus 403 ~l~~~~d~i~~l~~g~i 419 (718)
T PLN03073 403 FLNTVVTDILHLHGQKL 419 (718)
T ss_pred HHHHhCCEEEEEECCEE
Confidence 13333446677776664
No 382
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.61 E-value=2.7e-15 Score=161.30 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=112.2
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L 469 (621)
..++|+||||.+.+|+ .++||||+|+||||.++.|-.++..++|.|.|+|.|+. .||.|+|..++.+.-
T Consensus 550 ~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdT 627 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDT 627 (790)
T ss_pred CCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecce
Confidence 3568999999999999 99999999999999999999999999999999999982 399999988765543
Q ss_pred ---ccceeecCCCCCHH-HHHHHH--HHH-Hh-hcCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 470 ---QVPIFEKGYEKDPA-IVAKEA--IQE-AT-RNGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 470 ---~v~l~~~~~~~d~~-~ia~~a--l~~-~~-~~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
++.+-....+.+.. +.++.| -+. +. -++|...+ ..+|||++||+++||++. ..|.+|+| ||+
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL-----K~P~iIlL-DEA 701 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL-----KAPSIILL-DEA 701 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh-----cCCcEEEE-cch
Confidence 33321111111111 111111 111 00 12333222 457999999999999999 88998888 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
|++||... .+.+..+|..++..
T Consensus 702 TSALDT~t-ER~IQaaL~rlca~ 723 (790)
T KOG0056|consen 702 TSALDTNT-ERAIQAALARLCAN 723 (790)
T ss_pred hhhcCCcc-HHHHHHHHHHHhcC
Confidence 99999876 46677888888763
No 383
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=3.8e-15 Score=147.48 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=98.9
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcC---------cEEEEccccc------ceeeeeehhhhhhhh
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK---------VSVMMAACDT------FRSGAVEQLRTHARR 468 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~---------GkV~I~~~Dt------~RigaveQl~~~~~~ 468 (621)
+++++++.+| +++|+|||||||||++..|++++.+.. +.+.+.+.+. .++|+++|.....
T Consensus 14 ~~~~l~~~~g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-- 88 (197)
T cd03278 14 DKTTIPFPPG---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-- 88 (197)
T ss_pred CCeeeecCCC---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc--
Confidence 3466776665 899999999999999999999886542 3465656553 4688888876443
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 469 LQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 469 L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
+. . . ....+.++++. ....+..+.++|||++|++.++++|+... ...|+++|| |||++|+|+..+.
T Consensus 89 ~~--~---~----~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~-~~~~~illl-DEP~~~LD~~~~~- 154 (197)
T cd03278 89 YS--I---I----SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFR-VRPSPFCVL-DEVDAALDDANVE- 154 (197)
T ss_pred ee--E---E----ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhc-cCCCCEEEE-eCCcccCCHHHHH-
Confidence 11 1 0 11233444444 22236677899999999999999986110 134577777 9999999999864
Q ss_pred HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+.+..+.+ +.++|++|.
T Consensus 155 ~l~~~l~~~~~-----~~tiIiitH 174 (197)
T cd03278 155 RFARLLKEFSK-----ETQFIVITH 174 (197)
T ss_pred HHHHHHHHhcc-----CCEEEEEEC
Confidence 44466666643 356777765
No 384
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=6.6e-15 Score=183.30 Aligned_cols=173 Identities=20% Similarity=0.154 Sum_probs=125.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+||||.+++|+ .++|||++|||||||++.|++++. .+|+|.|+|.|+. ++++++|...+
T Consensus 1232 ~~vL~~is~~I~~Ge--kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTI 1308 (1490)
T TIGR01271 1232 RAVLQDLSFSVEGGQ--RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTF 1308 (1490)
T ss_pred cceeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCH
Confidence 358999999999999 999999999999999999999986 7999999999872 49999998744
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+|+ ..+. . .+. +.+.++++.+.+ .++|..+. .+|||++|++.|||+|. .+|+++||
T Consensus 1309 R~NL--dp~~-~--~td-eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL-----r~~~ILlL 1377 (1490)
T TIGR01271 1309 RKNL--DPYE-Q--WSD-EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL-----SKAKILLL 1377 (1490)
T ss_pred HHHh--Cccc-C--CCH-HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh-----CCCCEEEE
Confidence 3343 2211 1 122 233445554322 24555554 47999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|.... ..+.+.|+.... +.++|++++ +...+. . -=.|+.+..|+-+
T Consensus 1378 -DEaTS~lD~~Te-~~I~~~L~~~~~-----~~TvI~IaH------Rl~ti~----~-~DrIlvL~~G~iv 1430 (1490)
T TIGR01271 1378 -DEPSAHLDPVTL-QIIRKTLKQSFS-----NCTVILSEH------RVEALL----E-CQQFLVIEGSSVK 1430 (1490)
T ss_pred -eCCcccCCHHHH-HHHHHHHHHHcC-----CCEEEEEec------CHHHHH----h-CCEEEEEECCEEE
Confidence 999999999875 445566655432 456777663 322222 1 2267777888765
No 385
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=4.2e-15 Score=185.01 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=109.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~~ 475 (621)
.+|+|++|.+++|+ +++|+|||||||||||+.|+|++.|..|+|.+.+ +++++.|...+ .+++- +.
T Consensus 440 ~~l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~Ti~eNI~--~g- 510 (1490)
T TIGR01271 440 PVLKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPGTIKDNII--FG- 510 (1490)
T ss_pred cceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCccHHHHHH--hc-
Confidence 58999999999999 9999999999999999999999999999999887 68999997533 22221 11
Q ss_pred cCCCCC-HHHHHH--HHHHHHhh-c-CC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 476 KGYEKD-PAIVAK--EAIQEATR-N-GS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 476 ~~~~~d-~~~ia~--~al~~~~~-~-~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
..+... ...+.. .....+.. . +. ......+||||+||+.|||+|. .+|+++|| |||++++|+...
T Consensus 511 ~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~-----~~~~illL-Dep~saLD~~~~ 584 (1490)
T TIGR01271 511 LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFTHLDVVTE 584 (1490)
T ss_pred cccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHH
Confidence 111111 111111 01111111 1 11 1234679999999999999999 99999999 999999999998
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+..++..+.+ +.+.|++|.
T Consensus 585 ~~i~~~~l~~~~~-----~~tvilvtH 606 (1490)
T TIGR01271 585 KEIFESCLCKLMS-----NKTRILVTS 606 (1490)
T ss_pred HHHHHHHHHHHhc-----CCeEEEEeC
Confidence 7666555554432 456677664
No 386
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=1.9e-15 Score=146.83 Aligned_cols=184 Identities=16% Similarity=0.195 Sum_probs=133.1
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc-cccce----------eeeeehhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA-CDTFR----------SGAVEQLRTHA 466 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~-~Dt~R----------igaveQl~~~~ 466 (621)
....+|+++||.+.+|+ .-+||||||+||||++-.|+|..+|+.|+|++.+ .|+.+ ||--+|-++..
T Consensus 16 ~GF~Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVf 93 (249)
T COG4674 16 GGFKALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVF 93 (249)
T ss_pred cceeeeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeeh
Confidence 45678999999999999 9999999999999999999999999999999999 77632 66677777655
Q ss_pred hhcc------cc------eeec---CCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 467 RRLQ------VP------IFEK---GYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 467 ~~L~------v~------l~~~---~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
+.+. +. ++.. ....+....+.+.++..++.+. +....-+|.|++|++.|..-|+ .+|.+
T Consensus 94 e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~-----Q~P~l 168 (249)
T COG4674 94 ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA-----QDPKL 168 (249)
T ss_pred hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec-----cCCcE
Confidence 5542 11 1111 1122334456677776666544 5556677999999999998888 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+|+ |||.+|+...... ..-+++..++. ..+++++. +..|.+-.++ .+|-.+.-|+-.+
T Consensus 169 LLl-DEPvAGMTd~Et~-~taeLl~~la~-----~hsilVVE------HDM~Fvr~~A----~~VTVlh~G~VL~ 226 (249)
T COG4674 169 LLL-DEPVAGMTDAETE-KTAELLKSLAG-----KHSILVVE------HDMGFVREIA----DKVTVLHEGSVLA 226 (249)
T ss_pred EEe-cCccCCCcHHHHH-HHHHHHHHHhc-----CceEEEEe------ccHHHHHHhh----heeEEEeccceee
Confidence 988 9999999776543 34467777764 23344433 3445555444 4888888888764
No 387
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=5.7e-15 Score=149.16 Aligned_cols=164 Identities=14% Similarity=0.067 Sum_probs=93.4
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHH-HHHHHhHhh--------cCc-EEEEc-ccc---cc--eeeee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL-AKVAYWLLQ--------HKV-SVMMA-ACD---TF--RSGAV 459 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlL-akLAg~L~~--------~~G-kV~I~-~~D---t~--Rigav 459 (621)
+.....+|++|||++.+|+ +++|+||||||||||+ ..|...-.+ ..+ .+... ..+ .. ..+..
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge--~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNK--LVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred ccchhhccccceeecCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 3455678999999999999 9999999999999996 433310000 000 00000 000 00 01111
Q ss_pred ehhhhhh--hhccc-------ceeecCCCC-CHHHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 460 EQLRTHA--RRLQV-------PIFEKGYEK-DPAIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 460 eQl~~~~--~~L~v-------~l~~~~~~~-d~~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
.|..... ....+ .++...+.. ..... .+.++.+.+.. .+..+..+||||+|++.|+++|+ .+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~-----~~ 155 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIG-----SG 155 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHH-----hC
Confidence 1100000 00000 000000111 11111 23444444332 36677889999999999999999 88
Q ss_pred Cc--EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 528 PD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 528 Pd--lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+ ++|| ||||+|+|+..+. .+.+.+..+... +.++|++|.
T Consensus 156 p~~~llll-DEPt~gLD~~~~~-~l~~~l~~~~~~----g~tii~itH 197 (226)
T cd03270 156 LTGVLYVL-DEPSIGLHPRDND-RLIETLKRLRDL----GNTVLVVEH 197 (226)
T ss_pred CCCCEEEE-eCCccCCCHHHHH-HHHHHHHHHHhC----CCEEEEEEe
Confidence 74 7777 9999999998864 455677766532 567777775
No 388
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.59 E-value=6.7e-15 Score=164.99 Aligned_cols=156 Identities=20% Similarity=0.205 Sum_probs=113.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh-hccc-ceeecC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RLQV-PIFEKG 477 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~-~L~v-~l~~~~ 477 (621)
..++++++|.+..|+ .|+||||||+||||||+.|+|.+.|..|.|.+... -++|++.|...... ...+ ......
T Consensus 335 ~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~--v~igyf~Q~~~~l~~~~t~~d~l~~~ 410 (530)
T COG0488 335 RLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET--VKIGYFDQHRDELDPDKTVLEELSEG 410 (530)
T ss_pred ceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--eEEEEEEehhhhcCccCcHHHHHHhh
Confidence 468899999999999 99999999999999999999999999999988664 58999999873322 1111 111111
Q ss_pred CCCCHHHHHHHHHHHHhhcCC--CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~~--d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
+.......+...+..+...+- ...+..+|||++.|+.||+.+. .+|.++|| ||||+.||.... +.+.++|.
T Consensus 411 ~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~-----~~pNvLiL-DEPTNhLDi~s~-~aLe~aL~ 483 (530)
T COG0488 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL-----QPPNLLLL-DEPTNHLDIESL-EALEEALL 483 (530)
T ss_pred CccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc-----cCCCEEEE-cCCCccCCHHHH-HHHHHHHH
Confidence 111113334444544443322 3566789999999999999999 89999999 999999998774 56667776
Q ss_pred HhhcCCCCCCceEEEecc
Q 007024 556 DLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 556 ~l~~~~~~~~it~IIlTK 573 (621)
.+ .-++|++|.
T Consensus 484 ~f-------~Gtvl~VSH 494 (530)
T COG0488 484 DF-------EGTVLLVSH 494 (530)
T ss_pred hC-------CCeEEEEeC
Confidence 55 334566664
No 389
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.5e-15 Score=144.54 Aligned_cols=154 Identities=18% Similarity=0.226 Sum_probs=108.9
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------------ceeeee
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------------FRSGAV 459 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------------~Rigav 459 (621)
....++|+++||++..|+ ++++-||+|+||||+|++|-+-|.|++|+|.+.-.+- .-+|+|
T Consensus 21 Gi~LpV~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyV 98 (235)
T COG4778 21 GVRLPVLRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYV 98 (235)
T ss_pred CEEeeeeeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHH
Confidence 344678999999999999 9999999999999999999999999999999865432 128888
Q ss_pred ehhhhhhhhc------ccceeecCCCCCH-HHHHHHHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 460 EQLRTHARRL------QVPIFEKGYEKDP-AIVAKEAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 460 eQl~~~~~~L------~v~l~~~~~~~d~-~~ia~~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.|.-....+. .-|+...+...+. ...+...+..+.... ...-+...|||+|||+.|+|.+. .+..+
T Consensus 99 SQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfi-----vd~pI 173 (235)
T COG4778 99 SQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFI-----VDYPI 173 (235)
T ss_pred HHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhh-----ccCce
Confidence 8854332222 2244444433322 233333343332211 13455667999999999999999 88888
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
+|| ||||+.||+.+....+ +.+..-+.
T Consensus 174 LLL-DEPTasLDa~Nr~vVv-eli~e~Ka 200 (235)
T COG4778 174 LLL-DEPTASLDATNRAVVV-ELIREAKA 200 (235)
T ss_pred EEe-cCCcccccccchHHHH-HHHHHHHh
Confidence 888 9999999998875333 44444433
No 390
>PLN03130 ABC transporter C family member; Provisional
Probab=99.57 E-value=1.6e-14 Score=180.53 Aligned_cols=150 Identities=21% Similarity=0.253 Sum_probs=111.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcC-cEEEEcccccceeeeeehhhhh-----hhhccccee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~-GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~ 474 (621)
.+|+|+++.+++|+ .++|+||+|||||||++.|+|.+.+.+ |+|.+.+ +++++.|...+ .+|+ -+.
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~LfngTIreNI--~fg 702 (1622)
T PLN03130 631 PTLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSWIFNATVRDNI--LFG 702 (1622)
T ss_pred ceeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccccCCCCHHHHH--hCC
Confidence 47999999999999 999999999999999999999999998 8998643 68999998643 3333 221
Q ss_pred ecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 475 EKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
..+ +. +...++++.+.+ .+.+..+ +.+|||++||++|||||. .+|+++|| ||||+++|
T Consensus 703 -~~~--d~-e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly-----~~~~IlLL-DEptSALD 772 (1622)
T PLN03130 703 -SPF--DP-ERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDVYIF-DDPLSALD 772 (1622)
T ss_pred -Ccc--cH-HHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHh-----CCCCEEEE-CCCccccC
Confidence 111 22 223334433221 1233333 358999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+......|++++..+. .+.+.|++|.
T Consensus 773 ~~~~~~I~~~~l~~~l-----~~kTvIlVTH 798 (1622)
T PLN03130 773 AHVGRQVFDKCIKDEL-----RGKTRVLVTN 798 (1622)
T ss_pred HHHHHHHHHHHhhHHh-----cCCEEEEEEC
Confidence 9887667777765443 2456677664
No 391
>PTZ00243 ABC transporter; Provisional
Probab=99.56 E-value=1.4e-14 Score=180.83 Aligned_cols=153 Identities=23% Similarity=0.210 Sum_probs=108.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc---ccceeec
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEK 476 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L---~v~l~~~ 476 (621)
..+|++++|.+++|+ +++|+|||||||||||+.|+|.+.|+.|+|.+. .++|++.|...+...- ++.+..
T Consensus 673 ~~iL~~isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~~Tv~enI~~~~- 745 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMNATVRGNILFFD- 745 (1560)
T ss_pred ceeEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCCCcHHHHHHcCC-
Confidence 358999999999999 999999999999999999999999999999874 3699999975332100 121211
Q ss_pred CCCCCHHHHHHHHHHHH------hh--cCC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 477 GYEKDPAIVAKEAIQEA------TR--NGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~------~~--~~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
..+.. ...++++.+ .. .+. +.....+||||+||+.|||+|. .+|+++|| |||+++||+.
T Consensus 746 --~~~~~-~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~-----~~p~illL-DEP~saLD~~ 816 (1560)
T PTZ00243 746 --EEDAA-RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY-----ANRDVYLL-DDPLSALDAH 816 (1560)
T ss_pred --hhhHH-HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-cCccccCCHH
Confidence 11111 111222111 00 011 3456789999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.....+..++.... .+.+.|++|.
T Consensus 817 ~~~~i~~~~~~~~~-----~~~TvIlvTH 840 (1560)
T PTZ00243 817 VGERVVEECFLGAL-----AGKTRVLATH 840 (1560)
T ss_pred HHHHHHHHHHHHhh-----CCCEEEEEeC
Confidence 77656655443221 2567777775
No 392
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.56 E-value=1.7e-14 Score=180.13 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=108.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~~ 475 (621)
.+|+|++|.+++|+ +++|+|||||||||+++.|+|++.|..|+|.+.+ ++|++.|...+ .+++. +.
T Consensus 652 ~~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~~~Ti~eNI~--~g- 722 (1522)
T TIGR00957 652 PTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQNDSLRENIL--FG- 722 (1522)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCccccCCcHHHHhh--cC-
Confidence 47999999999999 9999999999999999999999999999999976 68999997533 22221 11
Q ss_pred cCCCCCHHHHHHHHHHH------Hhh--cCC----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 476 KGYEKDPAIVAKEAIQE------ATR--NGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~------~~~--~~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
..+ +.. ...++++. +.. .+. +.....+||||+||+.|||+|. .+|+++|| ||||+++|+
T Consensus 723 ~~~--~~~-~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~-----~~~~illL-DEp~saLD~ 793 (1522)
T TIGR00957 723 KAL--NEK-YYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNADIYLF-DDPLSAVDA 793 (1522)
T ss_pred Ccc--CHH-HHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccccCH
Confidence 111 221 11222221 111 111 2335678999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
......++.++. .... ..+.+.|++|.
T Consensus 794 ~~~~~i~~~l~~-~~~~--~~~~tvIlvTH 820 (1522)
T TIGR00957 794 HVGKHIFEHVIG-PEGV--LKNKTRILVTH 820 (1522)
T ss_pred HHHHHHHHHHhh-hhhh--hcCCEEEEEeC
Confidence 987655544332 1110 12456777765
No 393
>PLN03232 ABC transporter C family member; Provisional
Probab=99.54 E-value=3.3e-14 Score=177.31 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=108.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~~ 475 (621)
.+|+|+||.+++|+ .++|+||+||||||+++.|+|.+.|.+|.+.... -+++++.|...+ .+|+ -+.
T Consensus 631 ~vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~---~~Iayv~Q~p~Lf~gTIreNI--~fg- 702 (1495)
T PLN03232 631 PTLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR---GSVAYVPQVSWIFNATVRENI--LFG- 702 (1495)
T ss_pred ceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEec---CcEEEEcCccccccccHHHHh--hcC-
Confidence 47999999999999 9999999999999999999999999887653211 258999998633 3333 221
Q ss_pred cCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 476 KGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
..+ +. +...++++.+.+ .+++..+ +.+||||+||++|||||. .+|+++|| ||||+++|+
T Consensus 703 ~~~--~~-e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly-----~~~~IlLL-DEptSaLD~ 773 (1495)
T PLN03232 703 SDF--ES-ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY-----SNSDIYIF-DDPLSALDA 773 (1495)
T ss_pred Ccc--CH-HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh-----cCCCEEEE-cCCccccCH
Confidence 111 22 223334333221 2233344 348999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
......|++++.... .+.+.|++|.
T Consensus 774 ~t~~~I~~~~l~~~l-----~~kT~IlvTH 798 (1495)
T PLN03232 774 HVAHQVFDSCMKDEL-----KGKTRVLVTN 798 (1495)
T ss_pred HHHHHHHHHHhhhhh-----cCCEEEEEEC
Confidence 887667766665432 2456677764
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=1.1e-14 Score=172.26 Aligned_cols=188 Identities=21% Similarity=0.272 Sum_probs=135.6
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEcccc----cc--eeeeeehhhhhhhhcc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACD----TF--RSGAVEQLRTHARRLQ 470 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~D----t~--RigaveQl~~~~~~L~ 470 (621)
...+|+||+=.+.+|. ..||+|++||||||||+.|||...- -.|.|+|.|.. +| ++|+++|...|...+-
T Consensus 803 ~~qLL~~V~G~~kPG~--LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGV--LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ceEhhhcCceEecCCc--eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 3467888888888998 9999999999999999999987532 36899998853 34 5999999887765553
Q ss_pred cc----ee--ec-CC--CC-CHHHHHHHHHHHHhhcCC-Cccccc----cchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 471 VP----IF--EK-GY--EK-DPAIVAKEAIQEATRNGS-DVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 471 v~----l~--~~-~~--~~-d~~~ia~~al~~~~~~~~-d~vliD----tSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
|. +. .+ .. .. +..+.++++++.+++..+ |.++.+ ++..+++|+.|+-+|+ .+|+.|||+|
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv-----A~P~~ilFLD 955 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV-----ANPSSILFLD 955 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe-----cCCceeEEec
Confidence 21 00 00 01 11 122456777888777766 566666 7888999999999999 9998888889
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE-----EeccccccccchhHHHHhHHHhCCcEEEEe-cCCC
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI-----LLTKFDTIDDKVGAALSMVYVSGAPVMFVG-CGQS 603 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I-----IlTK~De~~~~vG~~ls~~~~~g~PI~fvg-~Gq~ 603 (621)
|||+|||+.+....+ +.++.++..++.+.+|+| |+.-+|+. + ++.. |-..+|.| -||+
T Consensus 956 EPTSGLDsqaA~~i~-~~lrkla~tGqtIlCTIHQPS~~ife~FD~L-------L-LLkr-GGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVM-RFLRKLADTGQTILCTIHQPSIDIFEAFDEL-------L-LLKR-GGQTVYFGPLGEN 1019 (1391)
T ss_pred CCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEecCCcHHHHHHHhHH-------H-HHhc-CCeEEEecCcccc
Confidence 999999999876555 899999998876665554 44445554 2 3344 44455554 5655
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-13 Score=146.90 Aligned_cols=151 Identities=22% Similarity=0.253 Sum_probs=109.7
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------e-eeeeehhhhhhhh
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------R-SGAVEQLRTHARR 468 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------R-igaveQl~~~~~~ 468 (621)
....+|++++|.++.|+ .+++||++|+||||+++.|-.++.++.|.|.+++.|+. | ||.|+|...+...
T Consensus 274 ~~r~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFND 351 (497)
T COG5265 274 PRRPILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351 (497)
T ss_pred ccchhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhh
Confidence 44578999999999999 99999999999999999999999999999999999982 2 8999997654432
Q ss_pred cccceeecCCCCCH--HHHHHHHHHHHh--------hcCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 469 LQVPIFEKGYEKDP--AIVAKEAIQEAT--------RNGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 469 L~v~l~~~~~~~d~--~~ia~~al~~~~--------~~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
-- ++...|+... .+....+.+.+. -.+++..+ .-+|||++||+++||.+. .+|.+++|
T Consensus 352 ti--~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~il-----k~p~il~~- 423 (497)
T COG5265 352 TI--AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL-----KNPPILIL- 423 (497)
T ss_pred hH--HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHh-----cCCCEEEE-
Confidence 20 0111121111 011111111111 12344322 357999999999999999 89999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
||+|++||.... +.+...|+.++.
T Consensus 424 deatsaldt~te-~~iq~~l~~~~~ 447 (497)
T COG5265 424 DEATSALDTHTE-QAIQAALREVSA 447 (497)
T ss_pred ehhhhHhhhhHH-HHHHHHHHHHhC
Confidence 999999998764 566677777764
No 396
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.45 E-value=3.4e-13 Score=138.08 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=96.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEccc-c-----------cceeeeeehhhh---------------hhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAAC-D-----------TFRSGAVEQLRT---------------HAR 467 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~-D-----------t~RigaveQl~~---------------~~~ 467 (621)
.+++|||||||||||++..|++.+.+. ++++.+.+. | -.+++++.|... ..+
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 399999999999999999999998765 456665443 2 125777777531 111
Q ss_pred hcccceeecC-C-CC-CHHHHHHHHHHHHhhc--C-------------------CCccccccchhHHhHHHHHHHHHhhh
Q 007024 468 RLQVPIFEKG-Y-EK-DPAIVAKEAIQEATRN--G-------------------SDVVLVDTAGRMQDNEPLMRALSKLI 523 (621)
Q Consensus 468 ~L~v~l~~~~-~-~~-d~~~ia~~al~~~~~~--~-------------------~d~vliDtSGg~qqr~~LaraL~~l~ 523 (621)
++........ . +. .....+.++++.+... . .+..+.++|||++|++.++++|+.+.
T Consensus 106 ~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~ 185 (251)
T cd03273 106 QIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLL 185 (251)
T ss_pred EEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhh
Confidence 1111100000 0 11 1223444555554432 1 12456789999999999999987211
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
..+|+++|+ ||||+++|+..+. .+.+.|..+.+ +.++|++|.-+++
T Consensus 186 -~~~~~illl-DEPt~~ld~~~~~-~~~~~l~~~~~-----g~~ii~iSH~~~~ 231 (251)
T cd03273 186 -FKPAPMYIL-DEVDAALDLSHTQ-NIGRMIKTHFK-----GSQFIVVSLKEGM 231 (251)
T ss_pred -ccCCCEEEE-eCCCcCCCHHHHH-HHHHHHHHHcC-----CCEEEEEECCHHH
Confidence 125688887 9999999998864 44466666532 5677888875443
No 397
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.39 E-value=3.3e-12 Score=129.65 Aligned_cols=87 Identities=15% Similarity=0.012 Sum_probs=57.4
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccccc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 579 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~ 579 (621)
.....+||||+|++.|+++|+.. ...+|+++|+ ||||+|+|+.... .+.+.+..+.+ +.+.++.|..++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~-~~~~~~illl-DEp~~~ld~~~~~-~~~~~l~~~~~-----~~~ii~~~h~~~--- 222 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQ-KCDPAPFYLF-DEIDAALDAQYRT-AVANMIKELSD-----GAQFITTTFRPE--- 222 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHh-ccCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEecCHH---
Confidence 45667899999999999999710 0125788888 9999999999864 44466666543 344555554322
Q ss_pred chhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 580 KVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 580 ~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+. ...-.|+.+.+-|.+.
T Consensus 223 ----~~----~~~d~i~~l~~~~~~~ 240 (243)
T cd03272 223 ----LL----EVADKFYGVKFRNKVS 240 (243)
T ss_pred ----HH----hhCCEEEEEEEECCEE
Confidence 12 2334677777666553
No 398
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=1.7e-12 Score=156.70 Aligned_cols=150 Identities=22% Similarity=0.245 Sum_probs=114.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh-----hhhhhcccceee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THARRLQVPIFE 475 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~-----~~~~~L~v~l~~ 475 (621)
+.|+||+|.+++|+ .+++||+.|||||+||..|.|.+...+|+|.+.|. ++|+.|.. +.-+|. +|.
T Consensus 535 ~tL~dIn~~i~~G~--lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~pWI~ngTvreNI---LFG 605 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQ--LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQPWIQNGTVRENI---LFG 605 (1381)
T ss_pred ccccceeEEecCCC--EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccccHhhCCcHHHhh---hcC
Confidence 48999999999999 99999999999999999999999999999999885 89999976 333332 112
Q ss_pred cCCCCCHHHHHHHHHHHHhh-------cCCCc-----cccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 476 KGYEKDPAIVAKEAIQEATR-------NGSDV-----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~-------~~~d~-----vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
..|. .+..+++++.+.+ ..-|. .=+.+||||+||+.||||+- .+.|+.|| |+|++++|+
T Consensus 606 ~~~d---~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY-----~~adIYLL-DDplSAVDa 676 (1381)
T KOG0054|consen 606 SPYD---EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVY-----QDADIYLL-DDPLSAVDA 676 (1381)
T ss_pred cccc---HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHh-----ccCCEEEE-cCcchhhhH
Confidence 1121 1223333333211 11121 22568999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
......|++.+..+.+ +.+.|++|.
T Consensus 677 hvg~~if~~ci~~~L~-----~KT~ILVTH 701 (1381)
T KOG0054|consen 677 HVGKHIFEECIRGLLR-----GKTVILVTH 701 (1381)
T ss_pred hhhHHHHHHHHHhhhc-----CCEEEEEeC
Confidence 9988889888855543 556777776
No 399
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.39 E-value=4.7e-12 Score=126.60 Aligned_cols=156 Identities=15% Similarity=0.039 Sum_probs=91.6
Q ss_pred ccccccc-cCCceEEEEEecCCCCHHHHHHHHHHhH-hhcCcEEEEc--------ccccceeeeeehhhhhhhhccccee
Q 007024 405 DVHAAKE-QRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMA--------ACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 405 dIs~~i~-~Gep~iiaLVGpNGvGKTTlLakLAg~L-~~~~GkV~I~--------~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
+|+|... +|+ +++|+||||+||||++..|++.+ -+..+..... .....+++.++|.... .+.+
T Consensus 19 ~i~~~~~~~~~--~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~--~~~~--- 91 (213)
T cd03279 19 VIDFTGLDNNG--LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGK--KYRV--- 91 (213)
T ss_pred EEeCCCCCccC--EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCe--EEEE---
Confidence 3455433 366 99999999999999999999643 2332222211 0111246666665411 1111
Q ss_pred ecCCCCCHHHHHHHH-HHHHhhcC-CCccccccchhHHhHHHHHHHHHhhh-----hcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 475 EKGYEKDPAIVAKEA-IQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLI-----YLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 475 ~~~~~~d~~~ia~~a-l~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~-----~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
....+.+........ +....... .+..+..+|||+++++.++++|+.-- ...+|+++|| |||++++|+....
T Consensus 92 ~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lll-DEp~~~lD~~~~~ 170 (213)
T cd03279 92 ERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFI-DEGFGTLDPEALE 170 (213)
T ss_pred EEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEE-eCCcccCCHHHHH
Confidence 011133333222111 11111111 25567789999999999999997210 0135778888 9999999998764
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+.+..+.+. +.+++++|.
T Consensus 171 -~~~~~l~~~~~~----~~tii~itH 191 (213)
T cd03279 171 -AVATALELIRTE----NRMVGVISH 191 (213)
T ss_pred -HHHHHHHHHHhC----CCEEEEEEC
Confidence 555677766532 567788776
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.8e-12 Score=138.17 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=102.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcc-----cceeecCCCCCHHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ-----VPIFEKGYEKDPAIVAKEAIQ 491 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~-----v~l~~~~~~~d~~~ia~~al~ 491 (621)
.|+|||||||||||+|..|.|-+.|+.|...-.- ..|||...|... +.|+ +.+..+.+.. +...++..+-
T Consensus 615 RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh--rL~iG~FdQh~~--E~L~~Eetp~EyLqr~FNl-pyq~ARK~LG 689 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH--RLRIGWFDQHAN--EALNGEETPVEYLQRKFNL-PYQEARKQLG 689 (807)
T ss_pred eeEEECCCCccHHHHHHHHhcCCCCCcchhhccc--eeeeechhhhhH--HhhccccCHHHHHHHhcCC-ChHHHHHHhh
Confidence 7999999999999999999999999988764322 357888877531 1111 1111111111 1122333444
Q ss_pred HHhhc-CC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 492 EATRN-GS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 492 ~~~~~-~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
.+++. +. -+.+-|+|||++.|+.++..-. ..||++|| ||||++||..+. ..+.+++..+. -.+|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal-----~~PDvlIL-DEPTNNLDIESI-DALaEAIney~-------GgVi 755 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELAL-----GGPDVLIL-DEPTNNLDIESI-DALAEAINEYN-------GGVI 755 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhc-----CCCCEEEe-cCCCCCcchhhH-HHHHHHHHhcc-------CcEE
Confidence 33332 22 3567899999999999987666 89999999 999999998764 44555555442 2356
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
|+|. |+- ++..|++-+. |---|.+.
T Consensus 756 ~VsH-DeR---------Li~eT~C~Lw-VvE~Q~i~ 780 (807)
T KOG0066|consen 756 MVSH-DER---------LIVETDCNLW-VVENQGID 780 (807)
T ss_pred EEec-ccc---------eeeecCceEE-EEccCChh
Confidence 6665 432 3556777654 44445553
No 401
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.36 E-value=6e-12 Score=129.99 Aligned_cols=64 Identities=17% Similarity=0.146 Sum_probs=50.8
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCC---CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNN---PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~---PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.|+++|. .+ |+++|| ||||+|||+.+.. .+.+.+..+.+. +.++|++|.
T Consensus 164 ~~~~~~LSgGe~QRl~LAraL~-----~~~~~p~lllL-DEPtsgLD~~~~~-~l~~~L~~l~~~----g~tvIiitH 230 (261)
T cd03271 164 GQPATTLSGGEAQRIKLAKELS-----KRSTGKTLYIL-DEPTTGLHFHDVK-KLLEVLQRLVDK----GNTVVVIEH 230 (261)
T ss_pred cCccccCCHHHHHHHHHHHHHh-----cCCCCCcEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 5567789999999999999999 64 788888 9999999999864 555677777543 556777665
No 402
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.36 E-value=5.8e-13 Score=133.47 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=50.0
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcC----CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLN----NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~----~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
+..+..+|+|+++++.++++++ . .|+++++ |||++|+|+... ..+.+.+..+.. ..+.|++|..
T Consensus 122 ~~~~~~lS~G~~~r~~la~al~-----~~~~~~p~ilil-DEPt~gLD~~~~-~~l~~~l~~~~~-----~~~~iivs~~ 189 (212)
T cd03274 122 WKNISNLSGGEKTLSSLALVFA-----LHHYKPTPLYVM-DEIDAALDFRNV-SIVANYIKERTK-----NAQFIVISLR 189 (212)
T ss_pred ccchhhcCHHHHHHHHHHHHHH-----hcccCCCCEEEE-cCCCcCCCHHHH-HHHHHHHHHHcC-----CCEEEEEECc
Confidence 4556789999999999999997 4 3688877 999999999886 466677776643 3467777754
Q ss_pred c
Q 007024 575 D 575 (621)
Q Consensus 575 D 575 (621)
+
T Consensus 190 ~ 190 (212)
T cd03274 190 N 190 (212)
T ss_pred H
Confidence 3
No 403
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.35 E-value=6.9e-12 Score=138.47 Aligned_cols=266 Identities=13% Similarity=0.165 Sum_probs=175.1
Q ss_pred ccCccchHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHhcCCCCCCc-----cchHHHHHHHHHHHHHHHcCC
Q 007024 329 NLDKADLEPALKALKDRLMTKNVAEEI-------AEKLCESVAASLEGKKLASF-----TRISSIVQAAMEEALVRILTP 396 (621)
Q Consensus 329 ~l~~~~l~~~l~~l~~~L~~~~V~~~i-------a~~L~~~v~~~l~g~~~~~~-----~~~~~~v~~al~~~L~~il~p 396 (621)
.|+..+.+.+++-+++ |.+.||+-=+ +.++|+++.-.-.|+.+++. .+....++.-+-..+...+.+
T Consensus 175 aLt~~E~~~Lf~~ir~-Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~~lv~~MvGr~~~~~~~~ 253 (500)
T COG1129 175 ALTVKETERLFDLIRR-LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFPE 253 (500)
T ss_pred cCCHHHHHHHHHHHHH-HHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHHHHHHHhhCcchhhhccc
Confidence 5677777776666654 8888886433 34555544222223333322 233333333332344444431
Q ss_pred -CC--------------ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------
Q 007024 397 -RR--------------SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------- 454 (621)
Q Consensus 397 -~~--------------~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------- 454 (621)
.. ....++|+||++..|| |++|.|--|+|+|-++..|.|+..+.+|+|.+.|....
T Consensus 254 ~~~~~~~~~~l~v~~l~~~~~~~dvSf~vr~GE--IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 254 PPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGE--ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred ccccCCCCcEEEEecCCCCCceeCceeEEeCCc--EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 00 0113678999999999 99999999999999999999988889999999998651
Q ss_pred ---eeeeeehhh---------hhhhhcccceeecCC---CCC---HHHHHHHHHHHHhh--cCCCccccccchhHHhHHH
Q 007024 455 ---RSGAVEQLR---------THARRLQVPIFEKGY---EKD---PAIVAKEAIQEATR--NGSDVVLVDTAGRMQDNEP 514 (621)
Q Consensus 455 ---RigaveQl~---------~~~~~L~v~l~~~~~---~~d---~~~ia~~al~~~~~--~~~d~vliDtSGg~qqr~~ 514 (621)
-++++...| ...+|+.++...... --+ ....+.+.+..+.. .+.+..+..+|||+||++.
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVv 411 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVV 411 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHH
Confidence 267777665 345555444211110 011 12344444444433 3445677889999999999
Q ss_pred HHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE-eccccccccchhHHHHhHHHhCC
Q 007024 515 LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL-LTKFDTIDDKVGAALSMVYVSGA 593 (621)
Q Consensus 515 LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II-lTK~De~~~~vG~~ls~~~~~g~ 593 (621)
|+|.|. .+|+++|| ||||.|.|.-+..+. .++++.++.. +..+++ .+.++|+ +.++.
T Consensus 412 larwL~-----~~p~vLil-DEPTRGIDVGAK~eI-y~li~~lA~~----G~ail~iSSElpEl-------l~~~D---- 469 (500)
T COG1129 412 LARWLA-----TDPKVLIL-DEPTRGIDVGAKAEI-YRLIRELAAE----GKAILMISSELPEL-------LGLSD---- 469 (500)
T ss_pred HHHHHh-----cCCCEEEE-CCCCcCcccchHHHH-HHHHHHHHHC----CCEEEEEeCChHHH-------HhhCC----
Confidence 999999 99999999 999999999887544 4899999876 444544 4445543 44444
Q ss_pred cEEEEecCCCCCcc--cCCCHHHHHHHh
Q 007024 594 PVMFVGCGQSYTDL--KKLNVKSIVKTL 619 (621)
Q Consensus 594 PI~fvg~Gq~v~DL--~~~~~~~~v~~L 619 (621)
.|+.+..|+-+..+ ..++.+.+....
T Consensus 470 RIlVm~~Gri~~e~~~~~~tee~im~~a 497 (500)
T COG1129 470 RILVMREGRIVGELDREEATEEAIMAAA 497 (500)
T ss_pred EEEEEECCEEEEEeccccCCHHHHHHHh
Confidence 88889999988643 337888877654
No 404
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.35 E-value=6.5e-13 Score=127.26 Aligned_cols=163 Identities=19% Similarity=0.160 Sum_probs=104.3
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeee--hhhhhhhhc-----ccceee--
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVE--QLRTHARRL-----QVPIFE-- 475 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Rigave--Ql~~~~~~L-----~v~l~~-- 475 (621)
.+|..+..|+ ++-+||||||||||+++.|||++ |-+|+|.+.|.+.......+ +.|.|...- .+|++.
T Consensus 17 plS~qv~aGe--~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL 93 (248)
T COG4138 17 PLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYL 93 (248)
T ss_pred ccccccccce--EEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhh
Confidence 4667777899 99999999999999999999976 47899999999873222111 111111111 122221
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCC----CccccccchhHHhHHHHHHHHHhhhhcCCCcE-EEEEeCCcCCCCHHHHHHHH
Q 007024 476 KGYEKDPAIVAKEAIQEATRNGS----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL-VLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~~~~----d~vliDtSGg~qqr~~LaraL~~l~~~~~Pdl-ILLVDEpt~GlD~~~q~~~f 550 (621)
.-+-++ ..++..+-..+...+. ...+..+|||+.||+.+|....++.-..+|+- ++++|||.++||.. |...+
T Consensus 94 ~L~qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvA-Q~~aL 171 (248)
T COG4138 94 TLHQPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVA-QQSAL 171 (248)
T ss_pred hhcCch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHH-HHHHH
Confidence 112222 2222222222222222 45677899999999999988887777677753 34459999999975 45677
Q ss_pred HHHHHHhhcCCCCCCceEEEecccccc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
.+.+..++.. ++++|+ +--|..
T Consensus 172 drll~~~c~~----G~~vim-s~HDLN 193 (248)
T COG4138 172 DRLLSALCQQ----GLAIVM-SSHDLN 193 (248)
T ss_pred HHHHHHHHhC----CcEEEE-eccchh
Confidence 7888888765 455444 444553
No 405
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.33 E-value=3.2e-12 Score=126.72 Aligned_cols=139 Identities=16% Similarity=0.054 Sum_probs=81.8
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-----E----EEEcccccceeeeeehhhhhhhhccccee
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-----S----VMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-----k----V~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
+++.+.+.+| +.+|+||||+||||++..|...+..... . +.-.+.+..++.+..|...... +
T Consensus 13 ~~~~l~f~~g---l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--~---- 83 (198)
T cd03276 13 RHLQIEFGPR---VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--N---- 83 (198)
T ss_pred eeeEEecCCC---eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC--C----
Confidence 3445555454 8899999999999999999765432211 0 0001111123333333221111 0
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
.........+.++++. ....+..+..+|+|+++++.++++|+. ....+|+++|| |||++|+|..... .+.+.|
T Consensus 84 --~~~~~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~-~~~~~p~illl-DEP~~glD~~~~~-~~~~~l 156 (198)
T cd03276 84 --PLCVLSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSL-WEVMESPFRCL-DEFDVFMDMVNRK-ISTDLL 156 (198)
T ss_pred --cCCHHHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHH-hcccCCCEEEe-cCcccccCHHHHH-HHHHHH
Confidence 0000112334444443 222356778899999999999999831 01179999999 9999999998764 444666
Q ss_pred HHhh
Q 007024 555 ADLS 558 (621)
Q Consensus 555 ~~l~ 558 (621)
..+.
T Consensus 157 ~~~~ 160 (198)
T cd03276 157 VKEA 160 (198)
T ss_pred HHHH
Confidence 6654
No 406
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.33 E-value=4.2e-12 Score=126.45 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=85.7
Q ss_pred EEEEEecCCCCHHHHHHHHH----HhHhhcCcEEEEc------ccccceeeeeehhhhhhhhccc----ceeecCCCCCH
Q 007024 417 VVVFVGVNGVGKSTNLAKVA----YWLLQHKVSVMMA------ACDTFRSGAVEQLRTHARRLQV----PIFEKGYEKDP 482 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLA----g~L~~~~GkV~I~------~~Dt~RigaveQl~~~~~~L~v----~l~~~~~~~d~ 482 (621)
+++|+||||+||||++..|+ |...+..+.+... +..-.++++++|... .+.+.+ .++...... +
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~~~~-~ 101 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENVIFC-H 101 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhceeee-c
Confidence 99999999999999999996 5555656544311 111135777777652 111111 111110000 1
Q ss_pred HHHHHHHHHHHhhcCCCccccccchhHHhH------HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQDN------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 483 ~~ia~~al~~~~~~~~d~vliDtSGg~qqr------~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
.....+. .+..+.++|+|++++ +.++++|. .+|+++++ |||++++|+....+.+.+.+..
T Consensus 102 ~~~~~~~--------~~~~~~~LS~G~~~~~~la~rlala~al~-----~~p~illl-DEP~~~LD~~~~~~~l~~~l~~ 167 (204)
T cd03240 102 QGESNWP--------LLDMRGRCSGGEKVLASLIIRLALAETFG-----SNCGILAL-DEPTTNLDEENIEESLAEIIEE 167 (204)
T ss_pred hHHHHHH--------HhcCccccCccHHHHHHHHHHHHHHHHhc-----cCCCEEEE-cCCccccCHHHHHHHHHHHHHH
Confidence 1111111 144567899999996 56778887 89999999 9999999998764256677776
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
+... .+.+++++|.
T Consensus 168 ~~~~---~~~~iiiitH 181 (204)
T cd03240 168 RKSQ---KNFQLIVITH 181 (204)
T ss_pred HHhc---cCCEEEEEEe
Confidence 6542 1456777775
No 407
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.31 E-value=5.7e-12 Score=133.42 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=119.6
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-------ce--eeeeehhhhhhhhc-cc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-------FR--SGAVEQLRTHARRL-QV 471 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-------~R--igaveQl~~~~~~L-~v 471 (621)
-+..|++++.+|+ ++.|+|.|||||||++..|.|+++|++|+|+++|..+ || +.+|+-...+...+ +.
T Consensus 338 hvgPiNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~ 415 (546)
T COG4615 338 HVGPINLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGP 415 (546)
T ss_pred eecceeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence 3567899999999 9999999999999999999999999999999999755 33 22333222222211 11
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhh------cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATR------NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~------~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
. + ...+. .+...++.+.+ .+-.....++|.|+++|+++.-++. .+-|+++| ||=.+-+||.-
T Consensus 416 e----~-~as~q-~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~All-----EeR~Ilv~-DEWAADQDPaF 483 (546)
T COG4615 416 E----G-KASPQ-LIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALL-----EERDILVL-DEWAADQDPAF 483 (546)
T ss_pred c----c-CCChH-HHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHH-----hhCCeEEe-ehhhccCChHH
Confidence 0 0 02222 22333333322 2334667889999999999999999 78888888 99999999998
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCc
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAP 594 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~P 594 (621)
+...+...+-.+.++ |.+++.+|.=| ...+.+=.+.+..+-.
T Consensus 484 RR~FY~~lLp~LK~q----GKTI~aIsHDd---~YF~~ADrll~~~~G~ 525 (546)
T COG4615 484 RREFYQVLLPLLKEQ----GKTIFAISHDD---HYFIHADRLLEMRNGQ 525 (546)
T ss_pred HHHHHHHHhHHHHHh----CCeEEEEecCc---hhhhhHHHHHHHhcCc
Confidence 765566666666655 67788999744 3566666666544433
No 408
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.29 E-value=4.4e-12 Score=138.78 Aligned_cols=142 Identities=15% Similarity=0.137 Sum_probs=94.6
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc---ccceeecCCC
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL---QVPIFEKGYE 479 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L---~v~l~~~~~~ 479 (621)
+++++|.+..+. .+++||||||||||+|+.|.|.+.|+.|.|.-...- +++...|.....--+ -+.++...+.
T Consensus 406 y~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~--~~~~y~Qh~~e~ldl~~s~le~~~~~~~ 481 (614)
T KOG0927|consen 406 YKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN--KLPRYNQHLAEQLDLDKSSLEFMMPKFP 481 (614)
T ss_pred hhhhhcccCccc--ceeEecCCCCchhhhHHHHhhccccccccccccccc--cchhhhhhhHhhcCcchhHHHHHHHhcc
Confidence 344445566666 899999999999999999999999999988654332 233333322111111 1111111222
Q ss_pred -CCHHHHHHHHHHHHhhcC-C-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 480 -KDPAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 480 -~d~~~ia~~al~~~~~~~-~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
....+....++.++++.+ . ++.+-.+|+|++.++.+++.+. ..|.+++| ||||+|||.... ..+.++|.
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~-----kqP~lLlL-DEPtnhLDi~ti-d~laeaiN 553 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAV-----KQPHLLLL-DEPTNHLDIETI-DALAEAIN 553 (614)
T ss_pred ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHh-----cCCcEEEe-cCCCcCCCchhH-HHHHHHHh
Confidence 234455566677766653 3 3555677999999999999999 89999998 999999997653 34445554
No 409
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.29 E-value=2.7e-11 Score=123.87 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=48.0
Q ss_pred ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 502 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 502 liDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.++|||+++++.|+++++.- ....|+++|| |||++|+|+.... .+.+.+..+... +.++|++|.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~-~~~~p~~lll-DEPt~~LD~~~~~-~l~~~i~~~~~~----g~~vi~isH 217 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIH-SYQPAPFFVL-DEVDAALDNTNVG-KVASYIREQAGP----NFQFIVISL 217 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHh-ccCCCCEEEE-ecccccCCHHHHH-HHHHHHHHhccC----CcEEEEEEC
Confidence 378899999999999999810 0023788888 9999999998763 455667666432 567788775
No 410
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.28 E-value=1e-11 Score=135.90 Aligned_cols=188 Identities=20% Similarity=0.237 Sum_probs=111.7
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE--EEcccccc-e------ee--eeehhh---
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDTF-R------SG--AVEQLR--- 463 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV--~I~~~Dt~-R------ig--aveQl~--- 463 (621)
..+.+++|++|++..|+ .++|+||||+||||+|++|++-..|..-.+ ++.....- + .. ..++.+
T Consensus 86 ~g~~l~kd~~~El~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rl 163 (614)
T KOG0927|consen 86 HGVELIKDVTLELNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRL 163 (614)
T ss_pred CCceeeeeeeEEecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHH
Confidence 45678999999999999 999999999999999999999877654333 32222110 0 00 011111
Q ss_pred -hhhhhcc-----------cceeecCCCCCHHHHHHHHHHHHhhcCC-----CccccccchhHHhHHHHHHHHHhhhhcC
Q 007024 464 -THARRLQ-----------VPIFEKGYEKDPAIVAKEAIQEATRNGS-----DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 464 -~~~~~L~-----------v~l~~~~~~~d~~~ia~~al~~~~~~~~-----d~vliDtSGg~qqr~~LaraL~~l~~~~ 526 (621)
.+.+.+. ..++......+......++...+...++ +..+.|+|||.+.|++|||+|. .
T Consensus 164 e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf-----~ 238 (614)
T KOG0927|consen 164 EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALF-----Q 238 (614)
T ss_pred HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHh-----c
Confidence 1122211 1111111112222222222222222222 4678899999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCc-EEEEecCCC
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAP-VMFVGCGQS 603 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~P-I~fvg~Gq~ 603 (621)
+|+++|| ||||++||..+. ..+.+.|..+.. . ..+|++. =|.+ -|..-++++....- +.|-|+=..
T Consensus 239 kP~LLLL-DEPtnhLDleA~-~wLee~L~k~d~-----~-~lVi~sh~QDfl---n~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 239 KPDLLLL-DEPTNHLDLEAI-VWLEEYLAKYDR-----I-ILVIVSHSQDFL---NGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred CCCEEEe-cCCccCCCHHHH-HHHHHHHHhccC-----c-eEEEEecchhhh---hhHhhhhheecccceeeecCCHHH
Confidence 9999999 999999999875 466666655432 1 2333333 3333 23444555555554 556554433
No 411
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.26 E-value=1.8e-11 Score=120.06 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=121.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce------eeeeehhh-hhhhhc----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------SGAVEQLR-THARRL---- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R------igaveQl~-~~~~~L---- 469 (621)
+++-|+++.++.|. ...+||.||+||||+|++|+|-....+|.|.+.+.+.|+ .|..-.|- .+....
T Consensus 28 P~~~Dfnldlp~gs--RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag 105 (291)
T KOG2355|consen 28 PIFFDFNLDLPAGS--RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG 105 (291)
T ss_pred ceEEEEeeccCCCc--eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCceeEecccccccccccc
Confidence 67789999999998 899999999999999999999777777999999999887 12111111 111111
Q ss_pred ccceee---------cCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 470 QVPIFE---------KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 470 ~v~l~~---------~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
.+|+.. ...+.++ ......+..+. -+....+.-.|-|+++|+.|+.-|. . |=.+||+||-|+-
T Consensus 106 evplq~D~sae~mifgV~g~dp-~Rre~LI~iLD-Idl~WRmHkvSDGqrRRVQicMGLL-----~-PfkVLLLDEVTVD 177 (291)
T KOG2355|consen 106 EVPLQGDISAEHMIFGVGGDDP-ERREKLIDILD-IDLRWRMHKVSDGQRRRVQICMGLL-----K-PFKVLLLDEVTVD 177 (291)
T ss_pred cccccccccHHHHHhhccCCCh-hHhhhhhhhee-ccceEEEeeccccchhhhHHHHhcc-----c-ceeEEEeeeeEee
Confidence 122211 0112333 22233333322 2345677888999999999998887 4 4444555999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||..+++ +.|.-+......++.+++..|. ||.. ...---++|+..|.-+.
T Consensus 178 LDVlARa----dLLeFlkeEce~RgatIVYATHIFDGL-----------e~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 178 LDVLARA----DLLEFLKEECEQRGATIVYATHIFDGL-----------ETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hHHHHHH----HHHHHHHHHHhhcCcEEEEEeeeccch-----------hhcchhEEEecCCeeee
Confidence 9999886 4444455555567888888887 4543 34445688999998764
No 412
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.25 E-value=3.8e-11 Score=145.35 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=122.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhh---h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHAR---R 468 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~---~ 468 (621)
.+|++|||.+++|+ .|+|||.+||||||++..|-.+..|.+|+|.|+|.|+. |++.++|.+.+.. +
T Consensus 1154 ~VLk~is~~I~p~e--KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1154 LVLKGISFTIKPGE--KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred chhcCceEEEcCCc--eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 58999999999999 99999999999999999999999999999999999983 6888888876533 2
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccccc----cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeC
Q 007024 469 LQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGE 536 (621)
Q Consensus 469 L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vliD----tSGg~qqr~~LaraL~~l~~~~~PdlILLVDE 536 (621)
.|+.-+. .|. .+..-+|++.+.+ .+.|..+.+ .|-|++|-+.|||||. .+..+++| ||
T Consensus 1232 ~NLDPf~-e~s---D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL-----r~skILvL-DE 1301 (1381)
T KOG0054|consen 1232 FNLDPFD-EYS---DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL-----RKSKILVL-DE 1301 (1381)
T ss_pred cccCccc-ccC---HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh-----ccCCEEEE-ec
Confidence 2442221 111 1223344444322 234555544 5889999999999999 88898888 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||++.|+..- ..+++.++.--+ ..|++. +.++...+++. -.|+-+-.|+-++
T Consensus 1302 ATAsVD~~TD-~lIQ~tIR~~F~-----dcTVlt------IAHRl~TVmd~-----DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1302 ATASVDPETD-ALIQKTIREEFK-----DCTVLT------IAHRLNTVMDS-----DRVLVLDAGRVVE 1353 (1381)
T ss_pred ccccCChHHH-HHHHHHHHHHhc-----CCeEEE------Eeeccchhhhc-----CeEEEeeCCeEee
Confidence 9999998763 345555544322 223332 12333333332 2577777777764
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=136.57 Aligned_cols=146 Identities=19% Similarity=0.110 Sum_probs=98.6
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh-----hhhhhc
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR-----THARRL 469 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~-----~~~~~L 469 (621)
+|... ..|++.++.+++|+ -+.|.|+|||||||+++.|||+-+--.|+|.+-.. -++-+++|.+ ++.+.+
T Consensus 402 ~p~~~-~ll~~l~~~v~~G~--~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~--~~~lflpQ~PY~p~GtLre~l 476 (604)
T COG4178 402 TPDGQ-TLLSELNFEVRPGE--RLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD--SALLFLPQRPYLPQGTLREAL 476 (604)
T ss_pred CCCCC-eeeccceeeeCCCC--EEEEECCCCCCHHHHHHHHhccCccCCCceecCCC--CceEEecCCCCCCCccHHHHH
Confidence 44443 67899999999999 99999999999999999999998888898887622 1334555544 333333
Q ss_pred ccceeecCCCCCHHHHHHHHHHHHhhcCC-------CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 470 QVPIFEKGYEKDPAIVAKEAIQEATRNGS-------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 470 ~v~l~~~~~~~d~~~ia~~al~~~~~~~~-------d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
-.|--... ...+ ...+++..+++.++ +.==.-+|+|+|||+++||.|. ++|+.++| ||+|+++|
T Consensus 477 ~YP~~~~~--~~d~-~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL-----~kP~~v~L-DEATsALD 547 (604)
T COG4178 477 CYPNAAPD--FSDA-ELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL-----HKPKWVFL-DEATSALD 547 (604)
T ss_pred hCCCCCCC--CChH-HHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH-----cCCCEEEE-ecchhccC
Confidence 33322111 1122 22233333322111 1000126999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHH
Q 007024 543 AVDQLSKFNQKLA 555 (621)
Q Consensus 543 ~~~q~~~f~~~L~ 555 (621)
...+... .+.++
T Consensus 548 e~~e~~l-~q~l~ 559 (604)
T COG4178 548 EETEDRL-YQLLK 559 (604)
T ss_pred hHHHHHH-HHHHH
Confidence 9887533 34443
No 414
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.24 E-value=6.7e-11 Score=125.97 Aligned_cols=174 Identities=24% Similarity=0.307 Sum_probs=111.1
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---eeeeeehhhhhhhhc----cc---ceeecCCCCC
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---RSGAVEQLRTHARRL----QV---PIFEKGYEKD 481 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---RigaveQl~~~~~~L----~v---~l~~~~~~~d 481 (621)
.|.+.+++|+|++||||||++..|...+...+.+|.+.+.|+. .-|++-..+...+.+ ++ .....+....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 3567899999999999999999999999988889999999982 223332222222211 11 1111122233
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
.+....+++..+...++|++++||+|..+....+ . ...|++++|..|-.|.|..... .-+..
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i----~-----~~aD~vlvv~~p~~gd~iq~~k----~gi~E----- 194 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETAV----A-----GMVDFFLLLQLPGAGDELQGIK----KGIME----- 194 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhHH----H-----HhCCEEEEEecCCchHHHHHHH----hhhhh-----
Confidence 4566777888888889999999999988655443 2 3468988877777776654321 10111
Q ss_pred CCCCceEEEeccccccccchhH------HHHhHHH-------hCCcEEEEe--cCCCCCcc
Q 007024 562 NPQLIDGILLTKFDTIDDKVGA------ALSMVYV-------SGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 562 ~~~~it~IIlTK~De~~~~vG~------~ls~~~~-------~g~PI~fvg--~Gq~v~DL 607 (621)
..+.+++||+|.. ...+. +-.+... ...||++++ +|++++.|
T Consensus 195 ---~aDIiVVNKaDl~-~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL 251 (332)
T PRK09435 195 ---LADLIVINKADGD-NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEI 251 (332)
T ss_pred ---hhheEEeehhccc-chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHH
Confidence 2358999999976 33221 1111111 236888887 66666543
No 415
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.21 E-value=2.2e-10 Score=120.78 Aligned_cols=184 Identities=23% Similarity=0.223 Sum_probs=111.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---eeeeehhhh----hhhhcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRT----HARRLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---igaveQl~~----~~~~L~v~ 472 (621)
..+|+++++....+. +++|+|++||||||++..|+..+...+.+|.+.+.|+.. .|++...+. ....-++.
T Consensus 21 ~~~~~~~~~~~~~~~--~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (300)
T TIGR00750 21 KQLLDRIMPYTGNAH--RVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAF 98 (300)
T ss_pred HHHHHhCCcccCCce--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCce
Confidence 356777777665555 999999999999999999999999889999999999743 222221111 11111221
Q ss_pred eeec---CCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 473 IFEK---GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 473 l~~~---~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+... +..........+++..+...++|++++||+|..+....+ . ...|.++++.-|..+.+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e~~i----~-----~~aD~i~vv~~~~~~~el~~~--- 166 (300)
T TIGR00750 99 IRSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSEVDI----A-----NMADTFVVVTIPGTGDDLQGI--- 166 (300)
T ss_pred eeecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhhhHH----H-----HhhceEEEEecCCccHHHHHH---
Confidence 1111 111122334556677777789999999999987655543 2 345777776666666543322
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHH-----H--HhH---H---HhCCcEEEEe--cCCCCCcc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA-----L--SMV---Y---VSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~-----l--s~~---~---~~g~PI~fvg--~Gq~v~DL 607 (621)
...+ .. ..+.+++||+|.. ...... + .+. . ....|+++++ +|+++.+|
T Consensus 167 -~~~l---~~-----~~~ivv~NK~Dl~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L 229 (300)
T TIGR00750 167 -KAGL---ME-----IADIYVVNKADGE-GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDEL 229 (300)
T ss_pred -HHHH---hh-----hccEEEEEccccc-chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHH
Confidence 2222 11 2358999999986 333211 0 111 1 1224677776 77777654
No 416
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=3.8e-11 Score=130.87 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=89.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE--EEcccccceeeeeehhhhhhhhcccceeecC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDTFRSGAVEQLRTHARRLQVPIFEKG 477 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV--~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~ 477 (621)
..+|.+-++.+..|+ .++|||+||+||||||+.|+.- .-.+..| -+.|+|+.- ..| -..++.--..+....
T Consensus 93 k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~---~~~-~l~~D~~~~dfl~~e 165 (582)
T KOG0062|consen 93 KILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEA---LQS-VLESDTERLDFLAEE 165 (582)
T ss_pred hhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHH---Hhh-hhhccHHHHHHHHhh
Confidence 456777788888998 9999999999999999999971 0011111 133444311 000 000000000010000
Q ss_pred ----CCCCHHHHHHHHHHHHhhcCCC-----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 478 ----YEKDPAIVAKEAIQEATRNGSD-----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 478 ----~~~d~~~ia~~al~~~~~~~~d-----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
.+....++...++. -.+|. ...-++|||-+=+++|||||. .+||++|| ||||+.||..+. .
T Consensus 166 ~~l~~~~~l~ei~~~~L~---glGFt~emq~~pt~slSGGWrMrlaLARAlf-----~~pDlLLL-DEPTNhLDv~av-~ 235 (582)
T KOG0062|consen 166 KELLAGLTLEEIYDKILA---GLGFTPEMQLQPTKSLSGGWRMRLALARALF-----AKPDLLLL-DEPTNHLDVVAV-A 235 (582)
T ss_pred hhhhccchHHHHHHHHHH---hCCCCHHHHhccccccCcchhhHHHHHHHHh-----cCCCEEee-cCCcccchhHHH-H
Confidence 00011222222222 23342 345678999999999999999 99999999 999999998875 3
Q ss_pred HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+...|. ...++++|++.
T Consensus 236 WLe~yL~-------t~~~T~liVSH 253 (582)
T KOG0062|consen 236 WLENYLQ-------TWKITSLIVSH 253 (582)
T ss_pred HHHHHHh-------hCCceEEEEec
Confidence 4444442 34688899886
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=125.46 Aligned_cols=168 Identities=19% Similarity=0.219 Sum_probs=104.7
Q ss_pred ccccccccc-----cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh------hhhhhccc
Q 007024 403 LRDVHAAKE-----QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR------THARRLQV 471 (621)
Q Consensus 403 L~dIs~~i~-----~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~------~~~~~L~v 471 (621)
+.++.+++. .|+ +++++||||-||||+++.|||.++|+.|. ..++ ++++-+|-- +..+.+.-
T Consensus 352 ~g~F~L~V~~G~i~~gE--vigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 352 YGDFKLEVEEGEIYDGE--VIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-KVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred cCceEEEecCCeeecce--EEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-eEeecceeecCCCCCcHHHHHHH
Confidence 345555554 566 99999999999999999999999999886 2232 444444421 11111100
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 472 PIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 472 ~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
.. ...+.. .....+++.-+.+.. ++..+-++|||+.||+++|.+|. .+.|+.|| |||++-||...+ -..
T Consensus 425 ~~-~~~~~~--s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~-----reADlYll-DEPSA~LDvEqR-~~v 494 (591)
T COG1245 425 AI-RSAFGS--SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALS-----READLYLL-DEPSAYLDVEQR-IIV 494 (591)
T ss_pred hh-hhhccc--chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhc-----cccCEEEe-cCchhhccHHHH-HHH
Confidence 00 000000 011112222122222 36778899999999999999999 99999999 999999998654 455
Q ss_pred HHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEe
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg 599 (621)
.++++.+.... ..+.+|+.. |-. -+-|.+..-|+|-|
T Consensus 495 akvIRR~~e~~---~kta~vVdH-Di~--------~~dyvsDr~ivF~G 531 (591)
T COG1245 495 AKVIRRFIENN---EKTALVVDH-DIY--------MIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHhhc---CceEEEEec-cee--------hhhhhhceEEEEec
Confidence 67888877643 444555432 221 23455566777766
No 418
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.15 E-value=1.3e-10 Score=115.11 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=83.7
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHH-HhHhhcCc-EEEEcccccceeeeeehhhhhhhhcccceeecCCCCC
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLA-g~L~~~~G-kV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d 481 (621)
-++++.+..|+ ++++|+||||+||||+++.|+ ..+.++.| -|-. .....++++.|.... + +.
T Consensus 18 ~~~~~~i~~~~-~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~~~~~~~~~~~~~~---l---------g~- 81 (200)
T cd03280 18 VPLDIQLGENK-RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AEGSSLPVFENIFAD---I---------GD- 81 (200)
T ss_pred EcceEEECCCc-eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cccccCcCccEEEEe---c---------Cc-
Confidence 35788888873 389999999999999999998 44444443 2221 111123333332110 0 00
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
. ...+..+...|++|++...+++++ .+|+++|+ |||+.|+|+..........+..+.+
T Consensus 82 ~-------------~~l~~~~s~fs~g~~~~~~i~~~~------~~p~llll-DEp~~glD~~~~~~i~~~~l~~l~~-- 139 (200)
T cd03280 82 E-------------QSIEQSLSTFSSHMKNIARILQHA------DPDSLVLL-DELGSGTDPVEGAALAIAILEELLE-- 139 (200)
T ss_pred h-------------hhhhcCcchHHHHHHHHHHHHHhC------CCCcEEEE-cCCCCCCCHHHHHHHHHHHHHHHHh--
Confidence 0 011223446799999988877653 57888888 9999999998875444455665543
Q ss_pred CCCCceEEEecccc
Q 007024 562 NPQLIDGILLTKFD 575 (621)
Q Consensus 562 ~~~~it~IIlTK~D 575 (621)
.+.+.+++|...
T Consensus 140 --~~~~vi~~tH~~ 151 (200)
T cd03280 140 --RGALVIATTHYG 151 (200)
T ss_pred --cCCEEEEECCHH
Confidence 256788888743
No 419
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.11 E-value=8.5e-10 Score=120.32 Aligned_cols=265 Identities=19% Similarity=0.236 Sum_probs=169.2
Q ss_pred CcccCccchHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHH-----H-
Q 007024 327 KANLDKADLEPALKALKDRLMTKNVAE-------EIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVR-----I- 393 (621)
Q Consensus 327 ~~~l~~~~l~~~l~~l~~~L~~~~V~~-------~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~-----i- 393 (621)
...||..+++..+.-++ +|.+.|-+- .=+.++|+++.-.-.|+.+++...+...-...|.+.+.. -
T Consensus 168 TaVLTP~E~~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~t~~ela~lMvG~~v~~~~ 246 (501)
T COG3845 168 TAVLTPQEADELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVVLRV 246 (501)
T ss_pred cccCCHHHHHHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecCCCCCCHHHHHHHhcCCcccccc
Confidence 34678888888887777 588777643 224556665533334554554442222111112221111 0
Q ss_pred ----cCCC--------------CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-c
Q 007024 394 ----LTPR--------------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-F 454 (621)
Q Consensus 394 ----l~p~--------------~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-~ 454 (621)
.+|. +..+.+++|||++..|| |++|.|+.|-|-+-|+..|+|+.++.+|+|.+.++|. -
T Consensus 247 ~~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GE--IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~ 324 (501)
T COG3845 247 VKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGE--IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324 (501)
T ss_pred ccCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCc--EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccc
Confidence 0111 12356899999999999 9999999999999999999999998889999999995 1
Q ss_pred ----------eeeeeehhh---------hhhhhccc------ceeecCCCCCHHH---HHHHHHHHHhh--cCCCccccc
Q 007024 455 ----------RSGAVEQLR---------THARRLQV------PIFEKGYEKDPAI---VAKEAIQEATR--NGSDVVLVD 504 (621)
Q Consensus 455 ----------RigaveQl~---------~~~~~L~v------~l~~~~~~~d~~~---ia~~al~~~~~--~~~d~vliD 504 (621)
-+|+++..| +.++++-+ |++..+ --+... .+.+.++.+.. .+.+...-.
T Consensus 325 ~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g-~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGG-FLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred cCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccccccccc-ccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 167777665 22333311 122211 122222 23333333222 122344567
Q ss_pred cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHH
Q 007024 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584 (621)
Q Consensus 505 tSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ 584 (621)
+|||++|++-++|+|. .+|+++++ ..||-|+|.-.. +.+++.|.+.++.+..+ .+|.+.+|++
T Consensus 404 LSGGNqQK~IlaREl~-----~~p~lLI~-~qPTrGLDvgA~-~~I~~~l~e~r~~G~AV---LLiS~dLDEi------- 466 (501)
T COG3845 404 LSGGNQQKLILARELA-----RRPDLLIA-AQPTRGLDVGAI-EFIHERLLELRDAGKAV---LLISEDLDEI------- 466 (501)
T ss_pred cCCcceehhhhhhhhc-----cCCCEEEE-cCCCccccHHHH-HHHHHHHHHHHhcCCEE---EEEehhHHHH-------
Confidence 8999999999999999 99999999 999999998764 67778887777664322 4555666665
Q ss_pred HHhHHHhCCcEEEEecCCCCC--cccCCCHHHHH
Q 007024 585 LSMVYVSGAPVMFVGCGQSYT--DLKKLNVKSIV 616 (621)
Q Consensus 585 ls~~~~~g~PI~fvg~Gq~v~--DL~~~~~~~~v 616 (621)
++++. .|.-+..|+-+. +-..++.+.+-
T Consensus 467 l~lsD----rIaVi~~Gri~~~~~~~~~t~~~iG 496 (501)
T COG3845 467 LELSD----RIAVIYEGRIVGIVPPEEATREEIG 496 (501)
T ss_pred HHhhh----eeeeeeCCceecccccccCCHHHHH
Confidence 44554 667777777764 55556666654
No 420
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.09 E-value=5.2e-10 Score=112.27 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=57.8
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc-ccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF-DTI 577 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~-De~ 577 (621)
+..+.++|||++|+..++.+|+. ....+|+++|+ |||++|+|+.... .+.+.+..+.... -..+.+++|.- +..
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~-~~~~~p~llll-DEP~~~LD~~~~~-~i~~~l~~~~~~~--g~~~viiith~~~~~ 195 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSL-QELTRCPFRVV-DEINQGMDPTNER-KVFDMLVETACKE--GTSQYFLITPKLLPG 195 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHH-HhccCCCEEEE-ecccccCCHHHHH-HHHHHHHHHhhcC--CCceEEEEchhhccC
Confidence 45567899999998766654431 11278999888 9999999999874 4446666664320 12345666632 221
Q ss_pred ccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 578 DDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 578 ~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+ -.+-|+++..|+++
T Consensus 196 -------~~~~--~~~~v~~l~~g~~~ 213 (213)
T cd03277 196 -------LNYH--EKMTVLCVYNGPHI 213 (213)
T ss_pred -------Cccc--CceEEEEEecCccC
Confidence 1111 23378888888864
No 421
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.06 E-value=1.1e-10 Score=125.74 Aligned_cols=138 Identities=23% Similarity=0.248 Sum_probs=90.5
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE----Ecc-cccceeeeeehhhhhhhhc---------------c
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM----MAA-CDTFRSGAVEQLRTHARRL---------------Q 470 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~----I~~-~Dt~RigaveQl~~~~~~L---------------~ 470 (621)
.+|+ +++|+|+||.||||.+++|+|.+.|+=|+.- +.. .+-|| -.+|..|...+ .
T Consensus 98 r~G~--V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~Fr---GtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 98 RPGK--VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFR---GTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCc--EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhh---hhHHHHHHHHHHcCCcceecchHHHHH
Confidence 3677 9999999999999999999999999855431 110 00133 11223333222 0
Q ss_pred cceeecCC------CCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 VPIFEKGY------EKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 v~l~~~~~------~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+|-+.++. ..+......+.++.+.+.+ .+.-+-++|||+.|+++||.++. .+.|+.+| |||++-||.
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~-----rdADvY~F-DEpsSyLDi 246 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALL-----RDADVYFF-DEPSSYLDI 246 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHh-----ccCCEEEE-cCCcccccH
Confidence 11111110 0111123344555555444 36778899999999999999999 99999999 999999998
Q ss_pred HHHHHHHHHHHHHhhcC
Q 007024 544 VDQLSKFNQKLADLSSS 560 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~ 560 (621)
..++ ...++++.+++.
T Consensus 247 ~qRl-~~ar~Irel~~~ 262 (591)
T COG1245 247 RQRL-NAARVIRELAED 262 (591)
T ss_pred HHHH-HHHHHHHHHhcc
Confidence 7665 444778888764
No 422
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.06 E-value=2e-10 Score=122.52 Aligned_cols=177 Identities=21% Similarity=0.234 Sum_probs=115.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH--------hhcCcEEEEccccc--ceeeeee-hhh--hhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACDT--FRSGAVE-QLR--THA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--------~~~~GkV~I~~~Dt--~Rigave-Ql~--~~~ 466 (621)
..+|+|+++.+.+|+ +++++|++|+||||+|++|+|.. +|++|.|-+-..-. .+.|-.+ ++. ++.
T Consensus 396 ryvlr~vNL~ikpGd--vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEIKPGD--VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEecCCC--eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHH
Confidence 358999999999999 99999999999999999999843 57788887654221 1111111 111 111
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhhcC---CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG---SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~---~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.+.- ...|. ..+-+++..+++.+ +...+-++|.|++.|..||+.|+ ..|.+++. ||..+.||.
T Consensus 474 ehl~s------~tGD~-~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla-----erpn~~~i-DEF~AhLD~ 540 (593)
T COG2401 474 EHLRS------KTGDL-NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA-----ERPNVLLI-DEFAAHLDE 540 (593)
T ss_pred HHHhh------ccCch-hHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh-----cCCCcEEh-hhhhhhcCH
Confidence 11100 01121 22334455444433 34667899999999999999999 99998888 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.... ...+++++..+..+++.+++|.=-+ ++.+|. ---+.|+|.|...
T Consensus 541 ~TA~----rVArkiselaRe~giTlivvThrpE----v~~AL~-----PD~li~vgYg~v~ 588 (593)
T COG2401 541 LTAV----RVARKISELAREAGITLIVVTHRPE----VGNALR-----PDTLILVGYGKVP 588 (593)
T ss_pred HHHH----HHHHHHHHHHHHhCCeEEEEecCHH----HHhccC-----CceeEEeeccccc
Confidence 8764 3334444433456899999986433 333331 1246677776543
No 423
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.05 E-value=7.3e-10 Score=110.12 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=30.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.+++++++. .|+ +++|+||||+||||+++.|++...
T Consensus 15 ~v~n~i~l~--~g~--~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 15 RVANDIDME--KKN--GILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred eecceEEEc--CCc--EEEEECCCCCChHHHHHHHHHHHH
Confidence 467778776 467 999999999999999999998653
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.04 E-value=7.2e-10 Score=109.92 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=73.9
Q ss_pred cccccCCceEEEEEecCCCCHHHHHHHHHH-hHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHH
Q 007024 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVA 486 (621)
Q Consensus 408 ~~i~~Gep~iiaLVGpNGvGKTTlLakLAg-~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia 486 (621)
+.+..|+ +++|+||||+||||+++.|++ .+..+.|... -+...+++...|+..+... .
T Consensus 24 ~~l~~~~--~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~--~~~~~~i~~~dqi~~~~~~----------~------- 82 (202)
T cd03243 24 INLGSGR--LLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV--PAESASIPLVDRIFTRIGA----------E------- 82 (202)
T ss_pred EEEcCCe--EEEEECCCCCccHHHHHHHHHHHHHHHcCCCc--cccccccCCcCEEEEEecC----------c-------
Confidence 3344677 999999999999999999995 4434333211 1122334443332211100 0
Q ss_pred HHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007024 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (621)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (621)
.....-+...++++++ ...+.++. .+|+++|+ |||++|+|+......+...+..+.. .+.
T Consensus 83 ---------d~i~~~~s~~~~e~~~-l~~i~~~~-----~~~~llll-DEp~~gld~~~~~~l~~~ll~~l~~----~~~ 142 (202)
T cd03243 83 ---------DSISDGRSTFMAELLE-LKEILSLA-----TPRSLVLI-DELGRGTSTAEGLAIAYAVLEHLLE----KGC 142 (202)
T ss_pred ---------ccccCCceeHHHHHHH-HHHHHHhc-----cCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHh----cCC
Confidence 0011112233555554 33333444 68888888 9999999998775444444555543 256
Q ss_pred eEEEecccccc
Q 007024 567 DGILLTKFDTI 577 (621)
Q Consensus 567 t~IIlTK~De~ 577 (621)
.++++|...+.
T Consensus 143 ~vi~~tH~~~~ 153 (202)
T cd03243 143 RTLFATHFHEL 153 (202)
T ss_pred eEEEECChHHH
Confidence 78888875443
No 425
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.99 E-value=2.9e-09 Score=104.05 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=46.8
Q ss_pred cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 505 tSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|||+++++.++++|+.. ...+|+++++ |||++++|+..+. .+.+.+..+... +.+.+++|.
T Consensus 95 LS~Ge~~r~~Laral~~~-~~~~p~llil-DEp~~~LD~~~~~-~i~~~L~~~~~~----g~tiIiiSH 156 (178)
T cd03239 95 LSGGEKSLSALALIFALQ-EIKPSPFYVL-DEIDAALDPTNRR-RVSDMIKEMAKH----TSQFIVITL 156 (178)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEEC
Confidence 899999999999998611 1257899988 9999999999874 444667666532 456777775
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.99 E-value=1.9e-09 Score=134.06 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=52.3
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.||++|+. ...+|+++|| ||||+|||+.+.. .+.+.|..+.+. +.++|++|.
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~--~~~~P~LLIL-DEPTsGLD~~~~~-~Ll~lL~~L~~~----G~TVIiIsH 870 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLA--PSKKPTLYVL-DEPTTGLHTHDIK-ALIYVLQSLTHQ----GHTVVIIEH 870 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-eCCCCCCCHHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 55677899999999999999971 1258999999 9999999999864 555777777643 566777665
No 427
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.99 E-value=3.4e-09 Score=117.22 Aligned_cols=144 Identities=12% Similarity=0.085 Sum_probs=96.3
Q ss_pred HcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc-cceeeeeehhh-----hhh
Q 007024 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD-TFRSGAVEQLR-----THA 466 (621)
Q Consensus 393 il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D-t~RigaveQl~-----~~~ 466 (621)
+.+|.....+++++||.+.+|+ -+.|+||||||||+|++.|+|+-+-.+|++.--..- +.-+=+++|-+ ++.
T Consensus 441 l~tPt~g~~lie~Ls~~V~~g~--~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 441 LSTPTNGDLLIENLSLEVPSGQ--NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred ecCCCCCceeeeeeeeEecCCC--eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchh
Confidence 4456655567788999999999 999999999999999999999988889988654322 11133566644 222
Q ss_pred hhcccceeec---CCCCCHHHHHHHHHHHHhh-------cCCC----ccccc-cchhHHhHHHHHHHHHhhhhcCCCcEE
Q 007024 467 RRLQVPIFEK---GYEKDPAIVAKEAIQEATR-------NGSD----VVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 467 ~~L~v~l~~~---~~~~d~~~ia~~al~~~~~-------~~~d----~vliD-tSGg~qqr~~LaraL~~l~~~~~PdlI 531 (621)
+.+-.|+... ....+. ..+.+.++.+.+ .+.| .--.| +|+|++||.++||-+- ++|.+.
T Consensus 519 dQvIYP~~~~~~~~~~~~d-~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy-----~kPk~A 592 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASD-EDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY-----HKPKFA 592 (659)
T ss_pred heeeccCccccccccCCCH-HHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh-----cCCceE
Confidence 3322232111 011111 122333333322 2333 12234 5999999999999999 999999
Q ss_pred EEEeCCcCCCCHHH
Q 007024 532 LFVGEALVGNDAVD 545 (621)
Q Consensus 532 LLVDEpt~GlD~~~ 545 (621)
+| ||.|++++...
T Consensus 593 iL-DE~TSAv~~dv 605 (659)
T KOG0060|consen 593 IL-DECTSAVTEDV 605 (659)
T ss_pred Ee-echhhhccHHH
Confidence 99 99999998654
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.97 E-value=2.5e-09 Score=105.44 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=116.3
Q ss_pred HcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccccee----------------
Q 007024 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------------- 456 (621)
Q Consensus 393 il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri---------------- 456 (621)
+.++...+.+++++|+++.+|+ +-++||.+|+|||-..+.|+|..+.+ .+++.|-||.
T Consensus 13 ~~TsqG~vK~VD~v~ltlnEGE--i~GLVGESGSGKSLiAK~Ic~v~kdn----W~vTADR~Rf~~idLL~L~Pr~RRk~ 86 (330)
T COG4170 13 FKTSQGWVKAVDRVSMTLNEGE--IRGLVGESGSGKSLIAKAICGVNKDN----WRVTADRMRFDDIDLLRLSPRERRKL 86 (330)
T ss_pred EecCCCceEeeeeeeeeeccce--eeeeeccCCCchhHHHHHHhcccccc----eEEEhhhcccccchhhcCChHHhhhh
Confidence 4456677889999999999999 99999999999999999999977643 2233444443
Q ss_pred -----eeeehhh--------hhhhhc--ccceeec--CCCCCHHHHHHHHHHHHhhcCC----C---ccccccchhHHhH
Q 007024 457 -----GAVEQLR--------THARRL--QVPIFEK--GYEKDPAIVAKEAIQEATRNGS----D---VVLVDTAGRMQDN 512 (621)
Q Consensus 457 -----gaveQl~--------~~~~~L--~v~l~~~--~~~~d~~~ia~~al~~~~~~~~----d---~vliDtSGg~qqr 512 (621)
+.++|.+ .....+ ++|...- ..=......-++|++.+..-+. | -....+.-|+-|+
T Consensus 87 ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QK 166 (330)
T COG4170 87 VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQK 166 (330)
T ss_pred hccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCccee
Confidence 3344432 111111 3333211 0000011122334444432222 1 3455677888899
Q ss_pred HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhC
Q 007024 513 EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG 592 (621)
Q Consensus 513 ~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g 592 (621)
+.+|.+++ ++|.++|. ||||+.+++..+++.| +.|..+.+. .+ +.|+++--|.. . .-...
T Consensus 167 VMIA~A~A-----nqPrLLIA-DEPTN~~e~~Tq~Qif-RLLs~mNQn---~~-TtILL~s~Dl~-----~----is~W~ 226 (330)
T COG4170 167 VMIAIALA-----NQPRLLIA-DEPTNSMEPTTQAQIF-RLLSRLNQN---SN-TTILLISHDLQ-----M----ISQWA 226 (330)
T ss_pred eeeehhhc-----cCCceEec-cCCCcccCccHHHHHH-HHHHHhhcc---CC-ceEEEEcccHH-----H----HHHHh
Confidence 99999999 99999999 9999999999998777 455555432 23 44555544543 2 22333
Q ss_pred CcEEEEecCCCCC
Q 007024 593 APVMFVGCGQSYT 605 (621)
Q Consensus 593 ~PI~fvg~Gq~v~ 605 (621)
-.|..+=+||++.
T Consensus 227 d~i~VlYCGQ~~E 239 (330)
T COG4170 227 DKINVLYCGQTVE 239 (330)
T ss_pred hheEEEEeccccc
Confidence 3455555777763
No 429
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.96 E-value=4.9e-09 Score=100.52 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=76.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
++++|+||||+||||+++.|+..+-...+++.- ..+. +.|. .++......
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~-~~~~-~~g~-----------~~~~~~~~~----------------- 71 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRR-RSGV-KAGC-----------IVAAVSAEL----------------- 71 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhc-cCcc-cCCC-----------cceeeEEEE-----------------
Confidence 499999999999999999998776655444333 1111 1110 010000000
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
-...+.+|+|++++..++++|.. ....+|+++|+ |||+.|+|+.+... +.+.+..+... +.+.+++|...
T Consensus 72 ---i~~~~~lS~G~~~~~~la~~L~~-~~~~~~~llll-DEp~~gld~~~~~~-l~~~l~~~~~~----~~~vii~TH~~ 141 (162)
T cd03227 72 ---IFTRLQLSGGEKELSALALILAL-ASLKPRPLYIL-DEIDRGLDPRDGQA-LAEAILEHLVK----GAQVIVITHLP 141 (162)
T ss_pred ---ehheeeccccHHHHHHHHHHHHh-cCCCCCCEEEE-eCCCCCCCHHHHHH-HHHHHHHHHhc----CCEEEEEcCCH
Confidence 01123489999999999999981 11127788888 99999999998753 44555555432 45678877654
Q ss_pred c
Q 007024 576 T 576 (621)
Q Consensus 576 e 576 (621)
+
T Consensus 142 ~ 142 (162)
T cd03227 142 E 142 (162)
T ss_pred H
Confidence 4
No 430
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.96 E-value=3e-09 Score=126.74 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=50.9
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCC---cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~P---dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.|+++|. .+| +++|| |||++|||+.++. .+.+.|..+.+. +.++|++|.
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~-----~~p~~~~llIL-DEPtsGLD~~~~~-~L~~~L~~l~~~----G~TVIiitH 891 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELS-----KRSTGKTLYIL-DEPTTGLHFEDIR-KLLEVLHRLVDK----GNTVVVIEH 891 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHh-----cCCCCCeEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 4456788999999999999999 888 77777 9999999999874 555677777543 556777765
No 431
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.93 E-value=6e-09 Score=123.95 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=50.6
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.|+++|.. ...+|+++|| ||||+|||+.+.. .+.+.|..+.+. +.++|++|.
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~--~~~~p~llIL-DEPtsgLD~~~~~-~L~~~L~~l~~~----G~TVIvi~H 889 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSK--RSTGRTLYIL-DEPTTGLHFDDIK-KLLEVLQRLVDQ----GNTVVVIEH 889 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhh--cCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 44567889999999999999981 0125888888 9999999999874 555777777543 556777664
No 432
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.92 E-value=1.2e-08 Score=105.60 Aligned_cols=145 Identities=28% Similarity=0.318 Sum_probs=103.5
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---ceeeeeehhhhhhhhc----cccee---ecCCCCC
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIF---EKGYEKD 481 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---~RigaveQl~~~~~~L----~v~l~---~~~~~~d 481 (621)
.|.+.+++|.|++||||||++-.|...+...+.+|.+.+.|+ |--|++--.++-++.+ ++.+. .++.-..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 567779999999999999999999999998999999999997 4456666666555444 23222 1222233
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
......+++..+...+||+++|.|.|--|..+.++ .-.|.+++|.=|-.|=|.. .+..=+-+
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~---------~~aDt~~~v~~pg~GD~~Q----~iK~GimE----- 189 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA---------NMADTFLVVMIPGAGDDLQ----GIKAGIME----- 189 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh---------hhcceEEEEecCCCCcHHH----HHHhhhhh-----
Confidence 44556778888888999999999999888877665 3347777777776664432 22222222
Q ss_pred CCCCceEEEecccccc
Q 007024 562 NPQLIDGILLTKFDTI 577 (621)
Q Consensus 562 ~~~~it~IIlTK~De~ 577 (621)
.-|.++++|+|.-
T Consensus 190 ---iaDi~vINKaD~~ 202 (323)
T COG1703 190 ---IADIIVINKADRK 202 (323)
T ss_pred ---hhheeeEeccChh
Confidence 3468999999964
No 433
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.89 E-value=9.7e-09 Score=97.40 Aligned_cols=138 Identities=24% Similarity=0.244 Sum_probs=82.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---eeeeeehhhhhhhh----cccceeecC---CCCCHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---RSGAVEQLRTHARR----LQVPIFEKG---YEKDPAIVA 486 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---RigaveQl~~~~~~----L~v~l~~~~---~~~d~~~ia 486 (621)
+++++|++||||||++..|+.++.+.+++|.+..+|.. +.+.+...+...+. -++.+.... .........
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRAT 80 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhH
Confidence 37899999999999999999999999999999999973 22222211111101 111111111 111222334
Q ss_pred HHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007024 487 KEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (621)
Q Consensus 487 ~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (621)
.++++.+...++|++++||+|..+.... +. ...|.+++|--|. -.|..... +.. .....
T Consensus 81 ~~~~~~~~~~~~D~iiIDtaG~~~~~~~----~~-----~~Ad~~ivv~tpe-~~D~y~~~----k~~-------~~~~~ 139 (148)
T cd03114 81 PEVIRVLDAAGFDVIIVETVGVGQSEVD----IA-----SMADTTVVVMAPG-AGDDIQAI----KAG-------IMEIA 139 (148)
T ss_pred HHHHHHHHhcCCCEEEEECCccChhhhh----HH-----HhCCEEEEEECCC-chhHHHHh----hhh-------Hhhhc
Confidence 4555666666899999999887654332 22 3447777767676 33444321 110 12356
Q ss_pred eEEEecccc
Q 007024 567 DGILLTKFD 575 (621)
Q Consensus 567 t~IIlTK~D 575 (621)
+.++++|+|
T Consensus 140 ~~~~~~k~~ 148 (148)
T cd03114 140 DIVVVNKAD 148 (148)
T ss_pred CEEEEeCCC
Confidence 789999987
No 434
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.88 E-value=1.3e-08 Score=103.96 Aligned_cols=159 Identities=19% Similarity=0.113 Sum_probs=91.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
.+++||++||||||+|+.|+|. +....|.|. ..++++.+..+...++..+.++.. .-.+..++.. .++.+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t---~~p~~i~l~~~~~~~~~~~~~~~~---~~~~~~~v~~-~i~~~~ 100 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT---RRPLILQLINSSTEYAEFLHCKGK---KFTDFDEVRN-EIEAET 100 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCccc---ccceEEEccCCCCcceEEEecCCc---ccCCHHHHHH-HHHHHH
Confidence 7999999999999999999997 444445443 455677777776666665544321 1123333222 222111
Q ss_pred h---------------------cCCCccccccchhHHh--------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 495 R---------------------NGSDVVLVDTAGRMQD--------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 495 ~---------------------~~~d~vliDtSGg~qq--------r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
. .-.+..++||+|-... ....++.+....-....+++|+|.++..++...+
T Consensus 101 ~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d 180 (240)
T smart00053 101 DRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD 180 (240)
T ss_pred HHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh
Confidence 0 1146889999998531 1223333332111123458888888877765544
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHH
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYV 590 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~ 590 (621)
.. +..+.+... ...+.+++||+|.. ++...+++++..
T Consensus 181 ~l----~ia~~ld~~---~~rti~ViTK~D~~-~~~~~~~~~~~~ 217 (240)
T smart00053 181 AL----KLAKEVDPQ---GERTIGVITKLDLM-DEGTDARDILEN 217 (240)
T ss_pred HH----HHHHHHHHc---CCcEEEEEECCCCC-CccHHHHHHHhC
Confidence 22 222333222 24567899999998 455556666543
No 435
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.4e-09 Score=113.31 Aligned_cols=141 Identities=19% Similarity=0.163 Sum_probs=97.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcc---cceeecCCCCCHHHHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQ---VPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~---v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.++++|+||+||||+++++.+-+.|..|-+.+... .|+++..|...-.-.++ +.+....+..-..+.+.+.+..+
T Consensus 392 Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~ 469 (582)
T KOG0062|consen 392 RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSF 469 (582)
T ss_pred hhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhc
Confidence 68999999999999999999999999988877664 57888888542211111 22222223222333344444444
Q ss_pred hhcCC--CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 007024 494 TRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (621)
Q Consensus 494 ~~~~~--d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (621)
+..+- ...+..+|||++-++.+|.... ++|.+++| ||||+-||... +..+-++|+.+. -.+|++
T Consensus 470 Gl~g~la~~si~~LSGGQKsrvafA~~~~-----~~PhlLVL-DEPTNhLD~ds-l~AL~~Al~~F~-------GGVv~V 535 (582)
T KOG0062|consen 470 GLSGELALQSIASLSGGQKSRVAFAACTW-----NNPHLLVL-DEPTNHLDRDS-LGALAKALKNFN-------GGVVLV 535 (582)
T ss_pred CCCchhhhccccccCCcchhHHHHHHHhc-----CCCcEEEe-cCCCccccHHH-HHHHHHHHHhcC-------CcEEEE
Confidence 44321 2335668999999999999888 99999999 99999999765 455666666553 235666
Q ss_pred cc
Q 007024 572 TK 573 (621)
Q Consensus 572 TK 573 (621)
|.
T Consensus 536 SH 537 (582)
T KOG0062|consen 536 SH 537 (582)
T ss_pred EC
Confidence 64
No 436
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=8.8e-09 Score=102.84 Aligned_cols=136 Identities=19% Similarity=0.199 Sum_probs=81.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEEcccccceeeeeehhhhhhhhcccceeecCC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~ 478 (621)
..+.+++++....|+ +++|+||||+||||+++.|+++..- +-| ..+ .+.-.+++.. +++
T Consensus 16 ~~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~la~~G-~~v-pa~~~~l~~~-------d~I--------- 75 (204)
T cd03282 16 NFIPNDIYLTRGSSR--FHIITGPNMSGKSTYLKQIALLAIMAQIG-CFV-PAEYATLPIF-------NRL--------- 75 (204)
T ss_pred cEEEeeeEEeeCCCc--EEEEECCCCCCHHHHHHHHHHHHHHHHcC-CCc-chhhcCccCh-------hhe---------
Confidence 357889999998888 9999999999999999999986421 111 000 0000011111 111
Q ss_pred CCCHHHHHHHHHHHHhhc-CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHh
Q 007024 479 EKDPAIVAKEAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADL 557 (621)
Q Consensus 479 ~~d~~~ia~~al~~~~~~-~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l 557 (621)
...+... ....-....++++++.. .+-.++ .+|+++|+ |||+.|+|+.+.......++..+
T Consensus 76 -----------~~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~-----~~~~lvll-DE~~~gt~~~~~~~l~~~il~~l 137 (204)
T cd03282 76 -----------LSRLSNDDSMERNLSTFASEMSETA-YILDYA-----DGDSLVLI-DELGRGTSSADGFAISLAILECL 137 (204)
T ss_pred -----------eEecCCccccchhhhHHHHHHHHHH-HHHHhc-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHH
Confidence 0000010 11122233466676543 223334 67888887 99999999988765555666666
Q ss_pred hcCCCCCCceEEEecccccc
Q 007024 558 SSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 558 ~~~~~~~~it~IIlTK~De~ 577 (621)
... +..+++.|...+.
T Consensus 138 ~~~----~~~~i~~TH~~~l 153 (204)
T cd03282 138 IKK----ESTVFFATHFRDI 153 (204)
T ss_pred Hhc----CCEEEEECChHHH
Confidence 543 6678888875554
No 437
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=4.8e-08 Score=98.10 Aligned_cols=132 Identities=25% Similarity=0.256 Sum_probs=79.5
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHH--hHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCC
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg--~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d 481 (621)
.|+.+. .+.+++++|+||||+||||+|+.|+. ++ .+.|.+... +..++++.+|+.+....
T Consensus 20 nd~~l~--~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a--~~~~~~~~d~i~~~l~~------------- 81 (213)
T cd03281 20 NDTEIG--GGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPA--DSATIGLVDKIFTRMSS------------- 81 (213)
T ss_pred ceEEec--CCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEc--CCcEEeeeeeeeeeeCC-------------
Confidence 344443 44345999999999999999999994 44 455544432 34677777775321100
Q ss_pred HHHHHHHHHHHHhhcCCCccccccc--hhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTA--GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtS--Gg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
.+.+.-..| ..+-+++.++.+++ .+|.++|+ |||+.|+|+.+....+...+..+.+
T Consensus 82 ----------------~~si~~~~S~f~~el~~l~~~l~~~-----~~~slvll-DE~~~gtd~~~~~~~~~ail~~l~~ 139 (213)
T cd03281 82 ----------------RESVSSGQSAFMIDLYQVSKALRLA-----TRRSLVLI-DEFGKGTDTEDGAGLLIATIEHLLK 139 (213)
T ss_pred ----------------ccChhhccchHHHHHHHHHHHHHhC-----CCCcEEEe-ccccCCCCHHHHHHHHHHHHHHHHh
Confidence 000111111 22335566666666 78888888 9999999998765566667777654
Q ss_pred CCCCCCceEEEeccccc
Q 007024 560 SPNPQLIDGILLTKFDT 576 (621)
Q Consensus 560 ~~~~~~it~IIlTK~De 576 (621)
.. .....+++.|..-+
T Consensus 140 ~~-~~~~~vli~TH~~~ 155 (213)
T cd03281 140 RG-PECPRVIVSTHFHE 155 (213)
T ss_pred cC-CCCcEEEEEcChHH
Confidence 21 11345677776433
No 438
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.81 E-value=2e-08 Score=102.60 Aligned_cols=145 Identities=22% Similarity=0.263 Sum_probs=90.2
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---ceeeeeehhhhhhhhc----ccceeecCCCCCH--
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFEKGYEKDP-- 482 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---~RigaveQl~~~~~~L----~v~l~~~~~~~d~-- 482 (621)
.|+.++++|.||+|||||||+..|...+...+.+|.+.+.|+ |--|++--.|+-...+ ++.+.........
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 355679999999999999999999999888889999999998 3455665555443333 4433333222222
Q ss_pred -HHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 483 -AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 483 -~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
.....+++..+...+||++++.|.|--|....++ .-.|.+++|.-|-.|-+.... +.=+-.
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~---------~~aD~~v~v~~Pg~GD~iQ~~----KaGimE----- 167 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIA---------DMADTVVLVLVPGLGDEIQAI----KAGIME----- 167 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHH---------TTSSEEEEEEESSTCCCCCTB-----TTHHH-----
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHH---------HhcCeEEEEecCCCccHHHHH----hhhhhh-----
Confidence 3455677788888899999999999666666553 445888888889888664321 111111
Q ss_pred CCCCceEEEecccccc
Q 007024 562 NPQLIDGILLTKFDTI 577 (621)
Q Consensus 562 ~~~~it~IIlTK~De~ 577 (621)
..|+++++|+|.-
T Consensus 168 ---iaDi~vVNKaD~~ 180 (266)
T PF03308_consen 168 ---IADIFVVNKADRP 180 (266)
T ss_dssp ---H-SEEEEE--SHH
T ss_pred ---hccEEEEeCCChH
Confidence 2478999999953
No 439
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.78 E-value=1.7e-08 Score=99.02 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=74.5
Q ss_pred EEEEEecCCCCHHHHHHHHH-HhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 417 VVVFVGVNGVGKSTNLAKVA-YWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLA-g~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
+++|.||||+||||+++.|+ ..+..+.|.... ++.++++.+.++.... +. .
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~--a~~~~~~~~d~il~~~---~~-------~---------------- 52 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVP--AESAELPVFDRIFTRI---GA-------S---------------- 52 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCee--ehheEecccceEEEEe---CC-------C----------------
Confidence 47899999999999999999 455555553222 2335555555432111 10 0
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
...+.-+...++++++ +++++.. ..+|+++|+ |||++|+|+.+....+...+..+.+. .+..+++.|...
T Consensus 53 d~~~~~~s~fs~~~~~---l~~~l~~---~~~~~llll-DEp~~g~d~~~~~~~~~~~l~~l~~~---~~~~iii~TH~~ 122 (185)
T smart00534 53 DSLAQGLSTFMVEMKE---TANILKN---ATENSLVLL-DELGRGTSTYDGVAIAAAVLEYLLEK---IGALTLFATHYH 122 (185)
T ss_pred CchhccccHHHHHHHH---HHHHHHh---CCCCeEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhc---CCCeEEEEecHH
Confidence 0112223345666665 4444441 147888888 99999999988765555666655532 255678888765
Q ss_pred cc
Q 007024 576 TI 577 (621)
Q Consensus 576 e~ 577 (621)
+.
T Consensus 123 ~l 124 (185)
T smart00534 123 EL 124 (185)
T ss_pred HH
Confidence 44
No 440
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.78 E-value=1.7e-08 Score=110.52 Aligned_cols=164 Identities=16% Similarity=0.177 Sum_probs=102.2
Q ss_pred HcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh-----h
Q 007024 393 ILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----R 467 (621)
Q Consensus 393 il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~-----~ 467 (621)
+.+|...+ ++..++|.+++|- -+.|+||||||||+++++|+|+-+..+|...+-..+ ++-+++|-+... +
T Consensus 489 vItP~~~v-vv~~Ltf~i~~G~--hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~--~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 489 VITPAGDV-LVPKLTFQIEPGM--HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPN--NIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred eeccCcce-eecceeEEecCCc--eEEEECCCCccHHHHHHHHhccCcccCCeeecCCCc--ceEeccCCCccCcCcccc
Confidence 34555443 5678999999998 999999999999999999999888777766554332 455666654221 1
Q ss_pred hc-----ccceeecCCCCCH-HHHHHHH-HHHH-hh-cCCCccc--cc-cchhHHhHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 468 RL-----QVPIFEKGYEKDP-AIVAKEA-IQEA-TR-NGSDVVL--VD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 468 ~L-----~v~l~~~~~~~d~-~~ia~~a-l~~~-~~-~~~d~vl--iD-tSGg~qqr~~LaraL~~l~~~~~PdlILLVD 535 (621)
.. -..+..+++.... ..+.... +++. .. .++|.+. .| +|||++||..+||.+- +.|...+| |
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y-----HrPkyalL-D 637 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY-----HRPKYALL-D 637 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh-----cCcchhhh-h
Confidence 11 1123333443222 1111110 1111 11 2233221 23 5999999999999999 99999999 9
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
|.|++......-..| ++.+ ..+|+-+-+|.=-
T Consensus 638 EcTsAvsidvE~~i~-~~ak-------~~gi~llsithrp 669 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIF-QAAK-------DAGISLLSITHRP 669 (728)
T ss_pred hhhcccccchHHHHH-HHHH-------hcCceEEEeecCc
Confidence 999976543332233 4433 3477777777543
No 441
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.77 E-value=2.1e-08 Score=101.30 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=81.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH-hhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+.+++++...+++ +++|.||||+||||+++.|+-.. ..+-| ..+.++-.+++.++
T Consensus 18 ~v~~~~~~~~~~~~--~~~l~G~n~~GKstll~~i~~~~~la~~g--~~vpa~~~~~~~~~------------------- 74 (222)
T cd03285 18 FIPNDVTLTRGKSR--FLIITGPNMGGKSTYIRQIGVIVLMAQIG--CFVPCDSADIPIVD------------------- 74 (222)
T ss_pred eEEeeEEEeecCCe--EEEEECCCCCChHHHHHHHHHHHHHHHhC--CCcCcccEEEeccc-------------------
Confidence 46788999887777 99999999999999999998321 11111 01111111111110
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC---cCCCCHHHHHHHHHHHHHH
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp---t~GlD~~~q~~~f~~~L~~ 556 (621)
+++..+... +....+.|.+++++..+++.+.. ..+|+++|+ ||| |+++|+...... .+..
T Consensus 75 --------~il~~~~l~--d~~~~~lS~~~~e~~~~a~il~~---~~~~sLvLL-DEp~~gT~~lD~~~~~~~---il~~ 137 (222)
T cd03285 75 --------CILARVGAS--DSQLKGVSTFMAEMLETAAILKS---ATENSLIII-DELGRGTSTYDGFGLAWA---IAEY 137 (222)
T ss_pred --------eeEeeeccc--cchhcCcChHHHHHHHHHHHHHh---CCCCeEEEE-ecCcCCCChHHHHHHHHH---HHHH
Confidence 111111111 22345678999999988888842 267888888 999 888888776432 3344
Q ss_pred hhcCCCCCCceEEEecccccc
Q 007024 557 LSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+. .+..+++.|.+.++
T Consensus 138 l~~~---~~~~vlisTH~~el 155 (222)
T cd03285 138 IATQ---IKCFCLFATHFHEL 155 (222)
T ss_pred HHhc---CCCeEEEEechHHH
Confidence 4331 25668888885443
No 442
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.69 E-value=1e-07 Score=99.30 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=58.9
Q ss_pred cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHH
Q 007024 505 TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAA 584 (621)
Q Consensus 505 tSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ 584 (621)
+|||+++++.+++++... ...+|+++++ |||++++|+..+. .+.+.+..+.. +.+.|++|. ... +
T Consensus 171 lS~G~~~r~~la~~~~~~-~~~~p~vlll-DEp~~~Ld~~~~~-~l~~~l~~~~~-----~~tii~isH------~~~-~ 235 (276)
T cd03241 171 ASGGELSRLMLALKAILA-RKDAVPTLIF-DEIDTGISGEVAQ-AVGKKLKELSR-----SHQVLCITH------LPQ-V 235 (276)
T ss_pred cChhHHHHHHHHHHHHHh-cCCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHhC-----CCEEEEEec------hHH-H
Confidence 799999999999876510 0128999998 9999999998864 44466666543 356677664 121 1
Q ss_pred HHhHHHhCCcEEEEecC-CCC---CcccCCCHHHHHH
Q 007024 585 LSMVYVSGAPVMFVGCG-QSY---TDLKKLNVKSIVK 617 (621)
Q Consensus 585 ls~~~~~g~PI~fvg~G-q~v---~DL~~~~~~~~v~ 617 (621)
.. ..--++.+..| +.+ ..+.+++.+.-|.
T Consensus 236 ~~----~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 268 (276)
T cd03241 236 AA----MADNHFLVEKEVEGGRTVTKVRELDKEERVE 268 (276)
T ss_pred HH----hcCcEEEEEEecCCCeEEEEhhhcChhHHHH
Confidence 12 12245555543 332 3677777555544
No 443
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.68 E-value=1e-07 Score=94.81 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=89.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---------eeeeehhhhhhhhc-ccceeecCCCCCHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---------SGAVEQLRTHARRL-QVPIFEKGYEKDPAI 484 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---------igaveQl~~~~~~L-~v~l~~~~~~~d~~~ 484 (621)
|..++|+||+||||||+++.|.+.+.+.. .+.+...|.+. .|++.|.+...-.. +.+... ...+...
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~ 77 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKY-QLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTA--IREDASM 77 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCC-cEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccce--eccCHHH
Confidence 56899999999999999999999887654 47777777643 22222211110000 011000 0112211
Q ss_pred HHHHHHHHH--hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC
Q 007024 485 VAKEAIQEA--TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (621)
Q Consensus 485 ia~~al~~~--~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (621)
. ..++... ....+|.++|+++|.. +...+... . .+.+++|-+++.+.+... ....++
T Consensus 78 ~-~~~L~~l~~~~~~~D~iiIEt~G~~-----l~~~~~~~---l-~~~~i~vvD~~~~~~~~~------~~~~qi----- 136 (199)
T TIGR00101 78 N-LEAVAEMEARFPPLEMVFIESGGDN-----LSATFSPE---L-ADLTIFVIDVAAGDKIPR------KGGPGI----- 136 (199)
T ss_pred H-HHHHHHHHhcCCCCCEEEEECCCCC-----cccccchh---h-hCcEEEEEEcchhhhhhh------hhHhHh-----
Confidence 1 2222222 2236899999999942 22111100 1 133555566776655221 101111
Q ss_pred CCCceEEEeccccccc---cchhHHHHhHH--HhCCcEEEEe--cCCCCCccc
Q 007024 563 PQLIDGILLTKFDTID---DKVGAALSMVY--VSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 563 ~~~it~IIlTK~De~~---~~vG~~ls~~~--~~g~PI~fvg--~Gq~v~DL~ 608 (621)
..-+.+++||.|..+ +..-.+...+. ..+.|+.+++ +|+++.++.
T Consensus 137 -~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 137 -TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred -hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 245789999999972 22223333333 3567887776 888876543
No 444
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.68 E-value=6.2e-08 Score=96.52 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=39.3
Q ss_pred cccccchh-----HHhHHHHHHHHHhhhhcCCCcEEEEEeCCc-----CCCCHHHHHHHHHHHHHHhhc
Q 007024 501 VLVDTAGR-----MQDNEPLMRALSKLIYLNNPDLVLFVGEAL-----VGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 501 vliDtSGg-----~qqr~~LaraL~~l~~~~~PdlILLVDEpt-----~GlD~~~q~~~f~~~L~~l~~ 559 (621)
.++.+|.. ++....|++++. .+|+++++ |||| ++||+.... .+.+.+..++.
T Consensus 144 ~~~e~Sa~~~~~v~~~f~~ia~~l~-----~~p~~~~l-dEp~~~~~~~~ld~~~~~-~~~~~~~~~~~ 205 (215)
T PTZ00132 144 QYYDISAKSNYNFEKPFLWLARRLT-----NDPNLVFV-GAPALAPEEIQIDPELVA-QAEKELQAAAN 205 (215)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHh-----hcccceec-CCcccCCCccccCHHHHH-HHHHHHHHHhh
Confidence 34455543 666788999998 89999998 9999 999999864 55567766654
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.66 E-value=2.3e-07 Score=93.88 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=84.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHH-hHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg-~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+..++++.+..|+ +++|+||||+||||+++.|++ .+.++.|...... ..++++++|+.+...
T Consensus 19 ~v~n~i~~~~~~g~--~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~--~~~~~~~~~i~~~~~------------ 82 (222)
T cd03287 19 FVPNDIHLSAEGGY--CQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS--SATLSIFDSVLTRMG------------ 82 (222)
T ss_pred EEEEeEEEEecCCc--EEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC--ceEEeccceEEEEec------------
Confidence 46788999988888 999999999999999999998 6677877655443 355666555422110
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
..|.+..+.|--+..-..+...|. ...++.++|+ |||..|.++.+........+..+.+
T Consensus 83 -----------------~~d~~~~~~StF~~e~~~~~~il~---~~~~~sLvll-DE~~~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 83 -----------------ASDSIQHGMSTFMVELSETSHILS---NCTSRSLVIL-DELGRGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred -----------------CccccccccchHHHHHHHHHHHHH---hCCCCeEEEE-ccCCCCCChhhHHHHHHHHHHHHHh
Confidence 001111122222221111222222 1245677776 9999998877765545566666654
Q ss_pred CCCCCCceEEEecccccc
Q 007024 560 SPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 560 ~~~~~~it~IIlTK~De~ 577 (621)
. .+..+++.|..-+.
T Consensus 142 ~---~~~~~i~~TH~~~l 156 (222)
T cd03287 142 E---KKCLVLFVTHYPSL 156 (222)
T ss_pred c---cCCeEEEEcccHHH
Confidence 3 35678888875443
No 446
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.59 E-value=3.5e-07 Score=91.15 Aligned_cols=168 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC---CCHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE---KDPAIVAKE 488 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~---~d~~~ia~~ 488 (621)
.+.+++++|+|+.|||||||+..|+..+. ...+|.+...|.......++++. .+.++.....+ .-......+
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~----~~~~~~~l~~gcic~~~~~~~~~ 93 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRK----YGAPAIQINTGKECHLDAHMVAH 93 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHH----cCCcEEEEcCCCcccCChHHHHH
Confidence 34577999999999999999999987654 33577777777643111122221 12222211111 001111224
Q ss_pred HHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceE
Q 007024 489 AIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (621)
Q Consensus 489 al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (621)
++..+...++|.++++|+|....... +. ......+.|.+++.+.+.... +...+ ...+.
T Consensus 94 ~l~~~~~~~~d~IiIEt~G~l~~~~~----~~-----~~~~~~i~Vvd~~~~d~~~~~---~~~~~---------~~a~i 152 (207)
T TIGR00073 94 ALEDLPLDDIDLLFIENVGNLVCPAD----FD-----LGEHMRVVLLSVTEGDDKPLK---YPGMF---------KEADL 152 (207)
T ss_pred HHHHhccCCCCEEEEecCCCcCCCcc----cc-----cccCeEEEEEecCcccchhhh---hHhHH---------hhCCE
Confidence 44444444679999999993221110 11 123333444555555432211 11111 13458
Q ss_pred EEecccccccc---chhHHHHhHHHhC--CcEEEEe--cCCCCC
Q 007024 569 ILLTKFDTIDD---KVGAALSMVYVSG--APVMFVG--CGQSYT 605 (621)
Q Consensus 569 IIlTK~De~~~---~vG~~ls~~~~~g--~PI~fvg--~Gq~v~ 605 (621)
+++||.|.... ..-.+...+...+ .||..++ +|+++.
T Consensus 153 iv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~ 196 (207)
T TIGR00073 153 IVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLD 196 (207)
T ss_pred EEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHH
Confidence 99999998732 1223333344433 7888877 565554
No 447
>PRK13768 GTPase; Provisional
Probab=98.59 E-value=4.6e-07 Score=93.37 Aligned_cols=160 Identities=23% Similarity=0.258 Sum_probs=87.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce--eeeee--hhhhhhhhcccceeecCCCCCH--------
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR--SGAVE--QLRTHARRLQVPIFEKGYEKDP-------- 482 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R--igave--Ql~~~~~~L~v~l~~~~~~~d~-------- 482 (621)
++++++.|+.||||||++..++.++...+.+|.++..|+.. +++.. .++.+...-.+ +...+.+++.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v-~~~~~l~p~~~~~~~~~~ 80 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREI-MKKYGLGPNGALIASVDL 80 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHH-HHHcCCCCchHHHHHHHH
Confidence 46899999999999999999999998888899999888631 00100 01111000000 0000011111
Q ss_pred -HHHHHHHHHHHhhcCCCccccccchhHHhH--HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 483 -AIVAKEAIQEATRNGSDVVLVDTAGRMQDN--EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 483 -~~ia~~al~~~~~~~~d~vliDtSGg~qqr--~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
..........+...+.+++++|++|...-- ..+.+.+.+.+....++++++|.++..+.++.+......-.+.....
T Consensus 81 ~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~ 160 (253)
T PRK13768 81 LLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR 160 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH
Confidence 111223333444455689999999986521 22333333333223388998888887777665532111111111011
Q ss_pred CCCCCCceEEEeccccccc
Q 007024 560 SPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 560 ~~~~~~it~IIlTK~De~~ 578 (621)
. .....+++||+|...
T Consensus 161 ~---~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 161 L---GLPQIPVLNKADLLS 176 (253)
T ss_pred c---CCCEEEEEEhHhhcC
Confidence 1 134578999999873
No 448
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=1.1e-07 Score=113.85 Aligned_cols=154 Identities=17% Similarity=0.232 Sum_probs=106.7
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEccccc--c----eeeeeehhhhhhhhc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDT--F----RSGAVEQLRTHARRL 469 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt--~----RigaveQl~~~~~~L 469 (621)
.+.+|+|++.-+++|+ .+.++||+|+||||+|+.|+|-+... .|+|..+|.|. + -+++..|...|...|
T Consensus 127 ~~~il~~~sg~~~pg~--m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGE--MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred cceeecCcceeEcCCc--eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 3568999999999999 99999999999999999999865432 45899998875 1 267777776665555
Q ss_pred cc----ceeec------CCC-CCHH----HHHHHHHHHHhhcCC-Ccccc-----ccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 470 QV----PIFEK------GYE-KDPA----IVAKEAIQEATRNGS-DVVLV-----DTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 470 ~v----~l~~~------~~~-~d~~----~ia~~al~~~~~~~~-d~vli-----DtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
-| .+..+ .+. .... .+.+.+++.+++... |..+. -.|||+++|+.++..++ .++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v-----~~~ 279 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV-----GPA 279 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee-----cCc
Confidence 22 11000 011 1111 133445555555433 33332 35999999999999888 777
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
.+... ||+|.|||.....+.. ++++.+++..
T Consensus 280 ~~~~~-De~t~GLDSsTal~ii-k~lr~~a~~~ 310 (1391)
T KOG0065|consen 280 SILFW-DEITRGLDSSTAFQII-KALRQLAHIT 310 (1391)
T ss_pred ceeee-ecccccccHHHHHHHH-HHHHHHHhhh
Confidence 76666 9999999999877555 6777776543
No 449
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2e-08 Score=107.74 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=94.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHH--hHhhcCcEEEEccccc----------------ceeeeeeh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSVMMAACDT----------------FRSGAVEQ 461 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg--~L~~~~GkV~I~~~Dt----------------~RigaveQ 461 (621)
..++.+.++.|-.|+ .++||||||-||||||+.|+. +..|-.-.|++....+ .|....+.
T Consensus 277 k~LFvnA~L~Iv~GR--RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 277 KLLFVNASLTIVYGR--RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ceeeeccceEEEecc--eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 456777888888998 999999999999999999995 3445555666543322 23222221
Q ss_pred hh-----------hhhhhccccee-ecCCCCC-HHHHHHHHHHHHhhcC-C-CccccccchhHHhHHHHHHHHHhhhhcC
Q 007024 462 LR-----------THARRLQVPIF-EKGYEKD-PAIVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLN 526 (621)
Q Consensus 462 l~-----------~~~~~L~v~l~-~~~~~~d-~~~ia~~al~~~~~~~-~-d~vliDtSGg~qqr~~LaraL~~l~~~~ 526 (621)
.. +.+++|.-.+- .+..+.+ +...+++++.-++... + +...-+.|||-+-|+.|||+|- .
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALf-----l 429 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALF-----L 429 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHh-----c
Confidence 11 11222211000 0011111 1223334433222111 1 3455678999999999999999 9
Q ss_pred CCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 527 NPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 527 ~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.|.+++| ||||+.||.... ..++..|..+ ..+.+|++.
T Consensus 430 EPTLLML-DEPTNHLDLNAV-IWLdNYLQgW-------kKTLLIVSH 467 (807)
T KOG0066|consen 430 EPTLLML-DEPTNHLDLNAV-IWLDNYLQGW-------KKTLLIVSH 467 (807)
T ss_pred Cceeeee-cCCcccccccee-eehhhHHhhh-------hheeEEEec
Confidence 9999888 999999997543 3455555444 334566654
No 450
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.58 E-value=4.2e-07 Score=91.51 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=29.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
-+.+++++.... + +++|+||||+||||+++.|++..
T Consensus 19 ~v~n~~~l~~~~-~--~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 19 FVPNDTELDPER-Q--ILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eEeeeEEecCCc-e--EEEEECCCCCChHHHHHHHHHHH
Confidence 366788887654 4 99999999999999999998743
No 451
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.52 E-value=2.1e-07 Score=109.60 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=79.1
Q ss_pred cccccccCCceEEEEEecCCCCHHHHHHHHHHh-HhhcCc-EEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHH
Q 007024 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPA 483 (621)
Q Consensus 406 Is~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~-L~~~~G-kV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~ 483 (621)
+++.+..+ ..+++|+||||+||||+|+.|++. +.+..| -|-.. ...+++++.|... .+ + +..
T Consensus 314 ~di~l~~~-~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~--~~~~~~~~d~i~~-------~i-----~-~~~ 377 (771)
T TIGR01069 314 FTLNLKFE-KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN--EHSEIPYFEEIFA-------DI-----G-DEQ 377 (771)
T ss_pred ceeEeCCC-ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC--ccccccchhheee-------ec-----C-hHh
Confidence 45555555 139999999999999999999987 555555 22221 1122333222210 00 0 000
Q ss_pred HHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007024 484 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563 (621)
Q Consensus 484 ~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~ 563 (621)
. ....+...|++|.+...+++.+ ..|.++|+ |||++|+|+.+.......++..+..
T Consensus 378 s-------------i~~~LStfS~~m~~~~~il~~~------~~~sLvLl-DE~g~GtD~~eg~ala~aiLe~l~~---- 433 (771)
T TIGR01069 378 S-------------IEQNLSTFSGHMKNISAILSKT------TENSLVLF-DELGAGTDPDEGSALAISILEYLLK---- 433 (771)
T ss_pred H-------------HhhhhhHHHHHHHHHHHHHHhc------CCCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHh----
Confidence 0 1112344688888765554332 46777777 9999999999876554456666553
Q ss_pred CCceEEEecccccc
Q 007024 564 QLIDGILLTKFDTI 577 (621)
Q Consensus 564 ~~it~IIlTK~De~ 577 (621)
.+..+++.|...+.
T Consensus 434 ~g~~viitTH~~eL 447 (771)
T TIGR01069 434 QNAQVLITTHYKEL 447 (771)
T ss_pred cCCEEEEECChHHH
Confidence 25667888876554
No 452
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.41 E-value=1.4e-06 Score=89.02 Aligned_cols=146 Identities=23% Similarity=0.298 Sum_probs=68.7
Q ss_pred EEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehh--------h---hhhhhcccceeecCCCCCHHHHHHH
Q 007024 420 FVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL--------R---THARRLQVPIFEKGYEKDPAIVAKE 488 (621)
Q Consensus 420 LVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl--------~---~~~~~L~v~l~~~~~~~d~~~ia~~ 488 (621)
++||.||||||+++.+..|+...+..+.+++.|+ |++.+ | ++.+.+ ..++-.|......
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP----a~~~~~y~~~iDird~i~~~evm------~~~~LGPNGal~~ 70 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP----AVENLPYPPDIDIRDLISVEEVM------EEYGLGPNGALIY 70 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T----T-S--SS--SEEGGGT--HHHHH------TT-T--HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch----HhcccccCchHHHHhhhhhhhhh------hhcCcCCcHHHHH
Confidence 6899999999999999999999999999999998 22221 1 111111 0111112111111
Q ss_pred HHH-----------HHhhcCCCccccccchhHHh--HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 489 AIQ-----------EATRNGSDVVLVDTAGRMQD--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 489 al~-----------~~~~~~~d~vliDtSGg~qq--r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
+++ .......+++++||+|...- ....++.+.+.+....+-.++++.++..-.|+..-...+--++.
T Consensus 71 ~me~l~~~~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s 150 (238)
T PF03029_consen 71 CMEYLEENIDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLS 150 (238)
T ss_dssp HHHHHGGGHHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHH
Confidence 111 11111238899999998752 22233333333322333344444666666776654433222222
Q ss_pred HhhcCCCCCCceEEEeccccccc
Q 007024 556 DLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~De~~ 578 (621)
-+.+ .....+.++||+|.+.
T Consensus 151 ~~~~---~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 151 IMLR---LELPHVNVLSKIDLLS 170 (238)
T ss_dssp HHHH---HTSEEEEEE--GGGS-
T ss_pred HHhh---CCCCEEEeeeccCccc
Confidence 2222 2367799999999984
No 453
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=98.39 E-value=7.1e-06 Score=83.05 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=88.4
Q ss_pred ecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc--------ccceeecCCCCCHHHHHHHHHHHH
Q 007024 422 GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL--------QVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 422 GpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L--------~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.--|+||||++..||+.+..+|++|.++.+|..|. +..|.++- .+.++ ..+......++++.+
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p-----l~~W~~~a~~~~~~~~~~~V~----~~~e~~~l~~~~e~a 79 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQP-----LAKWAENAQRPGAWPDRIEVY----EADELTILEDAYEAA 79 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc-----HHHHHHhccccCCCCCCeeEE----eccchhhHHHHHHHH
Confidence 34589999999999999999999999999998652 22332221 12222 222334556666666
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC--CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV--GNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~--GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (621)
...++|++++||.|+.......+- ...|+||. |+. .+|.....+.|+...+.. ..........+++
T Consensus 80 ~~~~~d~VlvDleG~as~~~~~ai--------a~sDlVlI---P~~~s~lD~~eA~~t~~~v~~~~-~~~~~~ip~~Vl~ 147 (231)
T PF07015_consen 80 EASGFDFVLVDLEGGASELNDYAI--------ARSDLVLI---PMQPSQLDADEAAKTFKWVRRLE-KAERRDIPAAVLF 147 (231)
T ss_pred HhcCCCEEEEeCCCCCchhHHHHH--------HHCCEEEE---CCCCChHHHHHHHHHHHHHHHHH-HhhCCCCCeeEEE
Confidence 667799999999998765444432 23588888 554 458777776674444433 3223334567999
Q ss_pred ccccc
Q 007024 572 TKFDT 576 (621)
Q Consensus 572 TK~De 576 (621)
|++.-
T Consensus 148 Tr~~~ 152 (231)
T PF07015_consen 148 TRVPA 152 (231)
T ss_pred ecCCc
Confidence 99874
No 454
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.36 E-value=6.6e-07 Score=87.47 Aligned_cols=160 Identities=17% Similarity=0.207 Sum_probs=86.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..|+++|+.|+|||||+..|.+........-.......+ .....+.+....-..+...... ...
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~ti~~~~~~~~---------------~~~ 67 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAF-LDKHPEERERGITIDLSFISFE---------------KNE 67 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCH-HHSSHHHHHCTSSSSSEEEEEE---------------BTE
T ss_pred EEEEEECCCCCCcEeechhhhhhcccccccccccccccc-ccccchhhhccccccccccccc---------------ccc
Confidence 389999999999999999999766422110000000000 0000000100000111111000 012
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
......++||+|...-.....+++ ..+|.+++|.++..|...... +.+..+.... ..-.+++||+|
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~------~~~D~ailvVda~~g~~~~~~-----~~l~~~~~~~---~p~ivvlNK~D 133 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGL------RQADIAILVVDANDGIQPQTE-----EHLKILRELG---IPIIVVLNKMD 133 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHH------TTSSEEEEEEETTTBSTHHHH-----HHHHHHHHTT----SEEEEEETCT
T ss_pred cccceeecccccccceeeccccee------cccccceeeeecccccccccc-----cccccccccc---cceEEeeeecc
Confidence 345678999999765433333432 578999999999999887653 3343343332 22689999999
Q ss_pred ccccchhHHHHhHH-Hh----------CCcEEEEe--cCCCCC
Q 007024 576 TIDDKVGAALSMVY-VS----------GAPVMFVG--CGQSYT 605 (621)
Q Consensus 576 e~~~~vG~~ls~~~-~~----------g~PI~fvg--~Gq~v~ 605 (621)
....+.-..+.-.+ .. ..||++++ +|.++.
T Consensus 134 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~ 176 (188)
T PF00009_consen 134 LIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID 176 (188)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred chhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence 98434433333322 12 35888887 566554
No 455
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.35 E-value=3.7e-07 Score=82.00 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=41.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+|++++|.+.+|+ +++|+||+|||||||++.|. .|.|.+.+.|+
T Consensus 3 ~aL~~vsl~i~~ge--~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di 47 (107)
T cd00820 3 TSLHGVLVDVYGKV--GVLITGDSGIGKTELALELI------KRKHRLVGDDN 47 (107)
T ss_pred eEEEeeEEEEcCCE--EEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeH
Confidence 57899999999999 99999999999999999986 78899999876
No 456
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.34 E-value=2.3e-06 Score=89.65 Aligned_cols=165 Identities=15% Similarity=0.210 Sum_probs=91.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC---CCHHHHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE---KDPAIVAKEAIQEA 493 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~---~d~~~ia~~al~~~ 493 (621)
++.|+|+|||||||||..|++.+....+ +.+...|..... + ....+..+++......+ .-.+....+++..+
T Consensus 106 ~v~l~G~pGsGKTTLl~~l~~~l~~~~~-~~VI~gD~~t~~--D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 106 VLNLVSSPGSGKTTLLTETLMRLKDSVP-CAVIEGDQQTVN--D--AARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCC-EEEECCCcCcHH--H--HHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 9999999999999999999998876654 444444432111 1 11122334444333221 11234455667766
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+.|+++|++.|..--...+ .|. ....++++ ..+.|.|... ++-.. ....+.+++||
T Consensus 181 ~~~~~d~liIEnvGnLvcPa~f--dlg-----e~~~v~vl--sV~eg~dkpl---Kyp~~---------f~~ADIVVLNK 239 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPASF--DLG-----EKHKVAVL--SVTEGEDKPL---KYPHM---------FAAASLMLLNK 239 (290)
T ss_pred hhcCCcEEEEECCCCccCCCcc--chh-----hceeEEEE--ECccccccch---hccch---------hhcCcEEEEEh
Confidence 6677899999999952111110 122 22233333 3445544211 11111 12567999999
Q ss_pred cccccc---chhHHHHhHHHh--CCcEEEEe--cCCCCCcc
Q 007024 574 FDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~---~vG~~ls~~~~~--g~PI~fvg--~Gq~v~DL 607 (621)
+|.... .+-.++..+... ..||+.++ +|+.+..|
T Consensus 240 iDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 240 VDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQW 280 (290)
T ss_pred HHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHH
Confidence 999731 233344444443 56888776 67666544
No 457
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.33 E-value=2.4e-06 Score=82.68 Aligned_cols=136 Identities=15% Similarity=0.042 Sum_probs=78.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
++.|.||+|+||||+...++......+.+|.+.+.+.. .+++...+..+++++ ... .......
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~----~~~~~~~~~~~g~~~---------~~l----~~~g~l~ 63 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES----PEELIENAESLGWDL---------ERL----EDEGLLA 63 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC----HHHHHHHHHHcCCCh---------HHH----HhcCCeE
Confidence 37899999999999999998766667778888776541 233333344443322 110 0000001
Q ss_pred CCCccccccchhHHh-HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC---HHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 497 GSDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGND---AVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 497 ~~d~vliDtSGg~qq-r~~LaraL~~l~~~~~PdlILLVDEpt~GlD---~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
-.+.....+++++.+ ...+...+...+...+|+++++ |||++.+| .. ....+.+.+..+.. .+++.++++
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lvi-D~~~~~~~~~~~~-~~~~i~~l~~~l~~----~g~tvi~v~ 137 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVI-DSVSGLLLMEQST-ARLEIRRLLFALKR----FGVTTLLTS 137 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEE-eCcHHHhhcChHH-HHHHHHHHHHHHHH----CCCEEEEEe
Confidence 113333344666554 2234444444444578998888 99999887 33 23344455555543 267777777
Q ss_pred ccc
Q 007024 573 KFD 575 (621)
Q Consensus 573 K~D 575 (621)
...
T Consensus 138 ~~~ 140 (187)
T cd01124 138 EQS 140 (187)
T ss_pred ccc
Confidence 543
No 458
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.31 E-value=3e-06 Score=106.18 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=60.2
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTID 578 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~ 578 (621)
...-.+|||+.||+.||..|.+ ....+.+.+| ||||.||++.+. +.+..+|..+... +-++|++.. .|-+
T Consensus 1695 q~~~tLSGGE~qRikLa~~l~~--~~~~~~lyil-DEPt~GLh~~d~-~~Ll~~l~~L~~~----g~tvivieH~~~~i- 1765 (1809)
T PRK00635 1695 QNLSSLSLSEKIAIKIAKFLYL--PPKHPTLFLL-DEIATSLDNQQK-SALLVQLRTLVSL----GHSVIYIDHDPALL- 1765 (1809)
T ss_pred CcCCccCchHHHHHHHHHHHhc--CCCCCcEEEE-cCCCCCCCHHHH-HHHHHHHHHHHhc----CCeEEEEeCCHHHH-
Confidence 3455679999999999999972 1123566677 999999999986 4555777777765 455666655 3333
Q ss_pred cchhHHHHh---HHHhCCcEEEEecCCCC
Q 007024 579 DKVGAALSM---VYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 579 ~~vG~~ls~---~~~~g~PI~fvg~Gq~v 604 (621)
...--++.+ .-..|--|+|-|+-+.+
T Consensus 1766 ~~aD~iidlgp~gG~~GG~iva~Gtp~~i 1794 (1809)
T PRK00635 1766 KQADYLIEMGPGSGKTGGKILFSGPPKDI 1794 (1809)
T ss_pred HhCCEEEEcCCCcccCCCEEEEEeCHHHH
Confidence 111112222 22334467777765544
No 459
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.29 E-value=1.9e-06 Score=87.26 Aligned_cols=71 Identities=20% Similarity=0.168 Sum_probs=43.1
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..+..+.++||+|-....-...+++. ...+|++++|.++..|....+. +.+..+..... .-++++||+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~----~~~~D~~llVvda~~g~~~~d~-----~~l~~l~~~~i---p~ivvvNK~ 148 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLT----GYAPDYAMLVVAANAGIIGMTK-----EHLGLALALNI---PVFVVVTKI 148 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhc----ccCCCEEEEEEECCCCCcHHHH-----HHHHHHHHcCC---CEEEEEECc
Confidence 34566789999996543222223332 1368898888888777765443 23333333332 247999999
Q ss_pred ccc
Q 007024 575 DTI 577 (621)
Q Consensus 575 De~ 577 (621)
|..
T Consensus 149 D~~ 151 (224)
T cd04165 149 DLA 151 (224)
T ss_pred ccc
Confidence 986
No 460
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.27 E-value=5.3e-06 Score=86.43 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=35.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+.++|+||||+||||+++.|++.+.+..|+|.+.+.++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEe
Confidence 37999999999999999999999999999999998775
No 461
>PHA02518 ParA-like protein; Provisional
Probab=98.26 E-value=1.6e-05 Score=78.36 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=90.7
Q ss_pred EEEEEecCC-CCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc-----ccceeecCCCCCHHHHHHHHH
Q 007024 417 VVVFVGVNG-VGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL-----QVPIFEKGYEKDPAIVAKEAI 490 (621)
Q Consensus 417 iiaLVGpNG-vGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L-----~v~l~~~~~~~d~~~ia~~al 490 (621)
+|+|++.-| |||||+...||.++...+.+|+++.+|..+-.. .+.... .++... .. ....+.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~-----~~~~~~~~~~~~i~~~~--~~----~~~~~~l 70 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-----DWAEAREEGEPLIPVVR--MG----KSIRADL 70 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChH-----HHHHhcccCCCCCchhh--cc----HHHHHHH
Confidence 678887765 999999999999999889999999999854211 111110 111110 00 1112223
Q ss_pred HHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
..+ ...||++++||+|+... +.+... ...|.+|++.+|.. .+.. ....+.+.+..+..........+++
T Consensus 71 ~~~-~~~~d~viiD~p~~~~~---~~~~~l-----~~aD~viip~~ps~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~iv 139 (211)
T PHA02518 71 PKV-ASGYDYVVVDGAPQDSE---LARAAL-----RIADMVLIPVQPSP-FDIW-AAPDLVELIKARQEVTDGLPKFAFI 139 (211)
T ss_pred HHH-hccCCEEEEeCCCCccH---HHHHHH-----HHCCEEEEEeCCCh-hhHH-HHHHHHHHHHHHHhhCCCCceEEEE
Confidence 322 35689999999998542 233333 35688888777753 2221 1222334444433222233455788
Q ss_pred eccccccccchhHHHHhHHHhCCcEE
Q 007024 571 LTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 571 lTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
.++++........+.......+.|+.
T Consensus 140 ~n~~~~~~~~~~~~~~~l~~~~~~~~ 165 (211)
T PHA02518 140 ISRAIKNTQLYREARKALAGYGLPIL 165 (211)
T ss_pred EeccCCcchHHHHHHHHHHHcCchhh
Confidence 88876542222356666666676654
No 462
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.26 E-value=6.9e-06 Score=83.54 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=68.6
Q ss_pred cccCCceEEEEEecCCCCHHHHH-HHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHH
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNL-AKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKE 488 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlL-akLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~ 488 (621)
+++|+ +++|+|+||+||||++ ..+++.+++ +.++.+...+-.. +|+...+..++..+ ..
T Consensus 21 i~~g~--~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~----~~~~~~~~~~g~~~---------~~---- 80 (230)
T PRK08533 21 IPAGS--LILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTT----TEFIKQMMSLGYDI---------NK---- 80 (230)
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCH----HHHHHHHHHhCCch---------HH----
Confidence 45788 9999999999999995 555565554 4444444433221 22222222333211 00
Q ss_pred HHHHHhhcCCCccccc----cchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC----CHHHHHHHHHHHHHHhhcC
Q 007024 489 AIQEATRNGSDVVLVD----TAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN----DAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 489 al~~~~~~~~d~vliD----tSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl----D~~~q~~~f~~~L~~l~~~ 560 (621)
... .. ...+++ .++...++..+.+ +.......+|+++++ |||++++ |+... +.+.+.++.+.+.
T Consensus 81 ~~~---~~--~l~~~~~~~~~~~~~~~~~~l~~-il~~~~~~~~~~lVI-De~t~~l~~~~d~~~~-~~l~~~l~~l~~~ 152 (230)
T PRK08533 81 KLI---SG--KLLYIPVYPLLSGNSEKRKFLKK-LMNTRRFYEKDVIII-DSLSSLISNDASEVAV-NDLMAFFKRISSL 152 (230)
T ss_pred Hhh---cC--cEEEEEecccccChHHHHHHHHH-HHHHHHhcCCCEEEE-ECccHHhcCCcchHHH-HHHHHHHHHHHhC
Confidence 000 00 111111 2333333333333 333333467898888 9999988 55433 3445666666543
Q ss_pred CCCCCceEEEecccc
Q 007024 561 PNPQLIDGILLTKFD 575 (621)
Q Consensus 561 ~~~~~it~IIlTK~D 575 (621)
+.+.++.+...
T Consensus 153 ----g~tvi~t~~~~ 163 (230)
T PRK08533 153 ----NKVIILTANPK 163 (230)
T ss_pred ----CCEEEEEeccc
Confidence 44555555443
No 463
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.25 E-value=9.9e-06 Score=80.99 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=40.4
Q ss_pred ccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 504 DtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
-+|||++..+.|+-.|+ +.......+++| ||+.++||...+ ..+...|..+.. ..-.||+|.-
T Consensus 136 ~lSgGEk~~~~Lal~lA-~~~~~~~p~~il-DEvd~~LD~~~~-~~l~~~l~~~~~-----~~Q~ii~Th~ 198 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLA-LQRYKPSPFLIL-DEVDAALDEQNR-KRLADLLKELSK-----QSQFIITTHN 198 (220)
T ss_dssp GS-HHHHHHHHHHHHHH-HHTCS--SEEEE-ESTTTTS-HHHH-HHHHHHHHHHTT-----TSEEEEE-S-
T ss_pred ccccccccccccccccc-cccccccccccc-cccccccccccc-cccccccccccc-----cccccccccc
Confidence 67999999988887776 444445555566 999999999986 455567766653 2446676643
No 464
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.25 E-value=4.2e-06 Score=96.31 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=64.9
Q ss_pred ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccch
Q 007024 502 LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKV 581 (621)
Q Consensus 502 liDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~v 581 (621)
.-.+|||+.||+.||..|.+ +.....+.+| ||||+||=..+.. .+.+.|..+...++++ ++|=..+|-+ ...
T Consensus 820 atTLSGGEaQRvKLA~EL~k--~~tg~TlYiL-DEPTTGLH~~Di~-kLl~VL~rLvd~GnTV---iVIEHNLdVI-k~A 891 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSK--RSTGKTLYIL-DEPTTGLHFDDIK-KLLEVLHRLVDKGNTV---IVIEHNLDVI-KTA 891 (935)
T ss_pred cccccchHHHHHHHHHHHhh--ccCCCeEEEe-CCCCCCCCHHHHH-HHHHHHHHHHhCCCEE---EEEecccceE-eec
Confidence 34579999999999999993 2244467777 9999999888864 4457888887765432 3444456654 222
Q ss_pred hHHHHhHH---HhCCcEEEEecCCCCCcccCCCHHHHHH
Q 007024 582 GAALSMVY---VSGAPVMFVGCGQSYTDLKKLNVKSIVK 617 (621)
Q Consensus 582 G~~ls~~~---~~g~PI~fvg~Gq~v~DL~~~~~~~~v~ 617 (621)
--++.+-- ..|--|++.||-+.|.....-....+++
T Consensus 892 D~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 892 DWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred CEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 22222211 2344566666665554333333333333
No 465
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.24 E-value=2.5e-06 Score=80.45 Aligned_cols=131 Identities=22% Similarity=0.243 Sum_probs=83.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.++|||+.|||||||+..|.+....... | -.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~K--------T---------------q~i------------------------- 34 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKK--------T---------------QAI------------------------- 34 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCc--------c---------------cee-------------------------
Confidence 6899999999999999998662211100 0 000
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
.+.-..|||+|---.+..+.++|. ....+.|+|++|-+++........ .|... +. ...+=|+||+|.
T Consensus 35 ~~~~~~IDTPGEyiE~~~~y~aLi--~ta~dad~V~ll~dat~~~~~~pP--~fa~~-------f~--~pvIGVITK~Dl 101 (143)
T PF10662_consen 35 EYYDNTIDTPGEYIENPRFYHALI--VTAQDADVVLLLQDATEPRSVFPP--GFASM-------FN--KPVIGVITKIDL 101 (143)
T ss_pred EecccEEECChhheeCHHHHHHHH--HHHhhCCEEEEEecCCCCCccCCc--hhhcc-------cC--CCEEEEEECccC
Confidence 122245899998776667777776 233678999998888765433221 12111 11 234567899999
Q ss_pred c--ccchhHHHHhHHHhCC-cEEEEe--cCCCCCccc
Q 007024 577 I--DDKVGAALSMVYVSGA-PVMFVG--CGQSYTDLK 608 (621)
Q Consensus 577 ~--~~~vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL~ 608 (621)
. +..+-.+...+...|. +|.+++ +|+.+..|.
T Consensus 102 ~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 102 PSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred ccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence 8 5567777777777777 454454 777776654
No 466
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.24 E-value=5.9e-07 Score=99.12 Aligned_cols=49 Identities=22% Similarity=0.256 Sum_probs=43.2
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-EEEEcccccc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTF 454 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-kV~I~~~Dt~ 454 (621)
+|++|++.+.+|+ +++||||+||||||+|+ +++..|..| +|.+.|.+++
T Consensus 21 vL~~Vsl~i~~GE--iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 21 ILVKFNKELPSSS--LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHhCCceeecCCC--EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 4678999999999 99999999999999999 677777666 8999999885
No 467
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.24 E-value=8.3e-06 Score=80.97 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.++|+|++|+|||||+..|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998863
No 468
>COG1159 Era GTPase [General function prediction only]
Probab=98.23 E-value=9.5e-06 Score=84.41 Aligned_cols=120 Identities=26% Similarity=0.315 Sum_probs=83.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc--cceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--TFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D--t~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+++|||.+-||||||++.|.| -+|.|...- |.| ....++-.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G------~KisIvS~k~QTTR----------~~I~GI~t-------------------- 50 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVG------QKISIVSPKPQTTR----------NRIRGIVT-------------------- 50 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhc------CceEeecCCcchhh----------hheeEEEE--------------------
Confidence 3899999999999999999876 356665432 222 12222211
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhh--hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLI--YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~--~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (621)
..+...+++||+|-...+-.|.+.|.+.. ...+.|++|||.+++-+..+.+. ..+..+... .....+++
T Consensus 51 -~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~-----~il~~lk~~---~~pvil~i 121 (298)
T COG1159 51 -TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDE-----FILEQLKKT---KTPVILVV 121 (298)
T ss_pred -cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHH-----HHHHHHhhc---CCCeEEEE
Confidence 23567899999999888888888887643 45789999999998887777664 233333331 23568999
Q ss_pred ccccccccc
Q 007024 572 TKFDTIDDK 580 (621)
Q Consensus 572 TK~De~~~~ 580 (621)
+|+|.+..+
T Consensus 122 NKID~~~~~ 130 (298)
T COG1159 122 NKIDKVKPK 130 (298)
T ss_pred EccccCCcH
Confidence 999988433
No 469
>PRK15494 era GTPase Era; Provisional
Probab=98.22 E-value=1.1e-05 Score=86.83 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=87.1
Q ss_pred cccccccccccccCC-----ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc--ccceeeeeehhhhhhhhcccc
Q 007024 400 IDILRDVHAAKEQRK-----PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Ge-----p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~--Dt~RigaveQl~~~~~~L~v~ 472 (621)
...+..+++.+..|+ ...++|+|.+|||||||++.|.+- ++.+... .+.| ....++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~------k~~ivs~k~~tTr----------~~~~~~- 94 (339)
T PRK15494 32 TGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE------KLSIVTPKVQTTR----------SIITGI- 94 (339)
T ss_pred cccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC------ceeeccCCCCCcc----------CcEEEE-
Confidence 345666677665554 347999999999999999998652 2222111 1111 000011
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHh--hhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSK--LIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~--l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
+ ...+...+++||+|-......+...+.+ +....+.|++++|.++..+.+....
T Consensus 95 -~-------------------~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~---- 150 (339)
T PRK15494 95 -I-------------------TLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITH---- 150 (339)
T ss_pred -E-------------------EeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHH----
Confidence 0 0123456889999974322222222211 1123578899888777766665432
Q ss_pred HHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhC--CcEEEEe--cCCCCCcc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSG--APVMFVG--CGQSYTDL 607 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g--~PI~fvg--~Gq~v~DL 607 (621)
..+..+.... ....+++||+|......-.+...+...+ .++..++ +|+++.+|
T Consensus 151 -~il~~l~~~~---~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 151 -NILDKLRSLN---IVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred -HHHHHHHhcC---CCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence 2233332222 2346899999986332333444443333 4566665 47765443
No 470
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.21 E-value=4.2e-06 Score=80.22 Aligned_cols=140 Identities=24% Similarity=0.295 Sum_probs=82.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-Ecccccc-eeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDTF-RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-I~~~Dt~-RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
.|+|+|.+.|||||+++.|+|.... |. +-|.-+- ..|.+.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~----v~n~pG~Tv~~~~g~~~---------------------------------- 43 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK----VGNWPGTTVEKKEGIFK---------------------------------- 43 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE----EEESTTSSSEEEEEEEE----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce----ecCCCCCCeeeeeEEEE----------------------------------
Confidence 4899999999999999999886421 11 1111110 111111
Q ss_pred hcCCCccccccchhH-----HhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 495 RNGSDVVLVDTAGRM-----QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 495 ~~~~d~vliDtSGg~-----qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
..+..+.++||+|-- .....+++... ...+||++++|.+++. + . +.+ ..+.++.+.+ ...++
T Consensus 44 ~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l---~~~~~D~ii~VvDa~~-l---~--r~l-~l~~ql~e~g---~P~vv 110 (156)
T PF02421_consen 44 LGDQQVELVDLPGIYSLSSKSEEERVARDYL---LSEKPDLIIVVVDATN-L---E--RNL-YLTLQLLELG---IPVVV 110 (156)
T ss_dssp ETTEEEEEEE----SSSSSSSHHHHHHHHHH---HHTSSSEEEEEEEGGG-H---H--HHH-HHHHHHHHTT---SSEEE
T ss_pred ecCceEEEEECCCcccCCCCCcHHHHHHHHH---hhcCCCEEEEECCCCC-H---H--HHH-HHHHHHHHcC---CCEEE
Confidence 122356677777731 12333333322 2478999999998876 2 1 122 3344555544 45689
Q ss_pred EeccccccccchhH---HHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 570 LLTKFDTIDDKVGA---ALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 570 IlTK~De~~~~vG~---~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
++||+|++ .+-|. .-.+....|+||+.+. +|+.+.+|.
T Consensus 111 vlN~~D~a-~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 111 VLNKMDEA-ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp EEETHHHH-HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred EEeCHHHH-HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence 99999998 56664 4456778899999987 777776654
No 471
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.21 E-value=3.5e-06 Score=92.99 Aligned_cols=108 Identities=22% Similarity=0.349 Sum_probs=72.5
Q ss_pred HHHH--HHHHHHHCCCCHHHHHHHHHHHHHHhc--CCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccccc-
Q 007024 338 ALKA--LKDRLMTKNVAEEIAEKLCESVAASLE--GKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ- 412 (621)
Q Consensus 338 ~l~~--l~~~L~~~~V~~~ia~~L~~~v~~~l~--g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~- 412 (621)
.+.+ |.+.|+..||++++|.+|++.+++.+. |..... ...++..+.+.|...+.+..... + ++...+..
T Consensus 179 PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~----ra~VR~~V~~~L~~~l~~~~a~~-y-~la~~i~~~ 252 (475)
T PRK12337 179 PFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVR----RDQLRRKVEALLLEEAGEEVARR-Y-RLLRSIRRP 252 (475)
T ss_pred CCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccccccc----HHHHHHHHHHHHHhhhhhhHHHH-H-HHHHHhhcc
Confidence 3444 788999999999999999999998884 443333 34455666666655543210000 0 01001122
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
.+|.+++|+|+||+||||+..+||..+-. ..++..|+.|
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~----~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGI----TRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC----cEEeehhHHH
Confidence 46899999999999999999999987643 3366778755
No 472
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.18 E-value=1.3e-05 Score=76.71 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=66.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhcC
Q 007024 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497 (621)
Q Consensus 418 iaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~ 497 (621)
++|+|..||||||+++.|++...+.............+ .+.. ...++..... ........
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~-------------~~~~~~~~ 61 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDV----LKEE---RERGITIKSG-------------VATFEWPD 61 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccC----CHHH---HHcCCCeecc-------------eEEEeeCC
Confidence 78999999999999999998755443322222211100 0000 0001100000 00001114
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
.+..++||+|-..-.......+ ...|.+++|.++..+...... +.+..+.. ......+++||+|..
T Consensus 62 ~~~~liDtpG~~~~~~~~~~~~------~~~d~~i~v~d~~~~~~~~~~-----~~~~~~~~---~~~~i~iv~nK~D~~ 127 (189)
T cd00881 62 RRVNFIDTPGHEDFSSEVIRGL------SVSDGAILVVDANEGVQPQTR-----EHLRIARE---GGLPIIVAINKIDRV 127 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHH------HhcCEEEEEEECCCCCcHHHH-----HHHHHHHH---CCCCeEEEEECCCCc
Confidence 5678999999554222222222 467888887777776654432 22222222 124558999999987
No 473
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.18 E-value=3.7e-06 Score=90.69 Aligned_cols=127 Identities=19% Similarity=0.219 Sum_probs=80.8
Q ss_pred ccccccccccCC---ceEEEEEecCCCCHHHHHHHHHHhHhhcCc-EEEEccccc-------ceeeeeehhhh---hhhh
Q 007024 403 LRDVHAAKEQRK---PYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDT-------FRSGAVEQLRT---HARR 468 (621)
Q Consensus 403 L~dIs~~i~~Ge---p~iiaLVGpNGvGKTTlLakLAg~L~~~~G-kV~I~~~Dt-------~RigaveQl~~---~~~~ 468 (621)
+.++.+.+..|+ .-+++++|.||-||||++++|||.++|+.| +|-...... -+-|.|.|+-. ....
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay 431 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAY 431 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhh
Confidence 445555555443 239999999999999999999999998765 443322211 23344444321 1111
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhhc-CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 469 LQVPIFEKGYEKDPAIVAKEAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 469 L~v~l~~~~~~~d~~~ia~~al~~~~~~-~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
+ ++ ..+.+.++-+... -+|..+..+|||++||++++..|- ...|+.+. |||.+-||...+.
T Consensus 432 ~-----------~p-qF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGG-----KpAdvYli-DEpsAylDSeQRi 493 (592)
T KOG0063|consen 432 M-----------HP-QFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLG-----KPADVYLI-DEPSAYLDSEQRI 493 (592)
T ss_pred c-----------CH-HHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcC-----CCCceEEe-cCchhhcChHHHH
Confidence 1 11 1112222222222 246677889999999999999888 66677776 9999999987654
No 474
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.17 E-value=1.4e-05 Score=80.65 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=76.3
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+.+++++...+++ +++|.||||+||||+++.|+.... .+-|- .+-++-++++.+.++.+..
T Consensus 18 ~v~ndi~l~~~~~~--~~~itG~n~~gKs~~l~~i~~~~~la~~G~--~vpa~~~~i~~~~~i~~~~------------- 80 (218)
T cd03286 18 FVPNDVDLGATSPR--ILVLTGPNMGGKSTLLRTVCLAVIMAQMGM--DVPAKSMRLSLVDRIFTRI------------- 80 (218)
T ss_pred eEEeeeEEeecCCc--EEEEECCCCCchHHHHHHHHHHHHHHHcCC--ccCccccEeccccEEEEec-------------
Confidence 45678999887788 999999999999999999997432 22221 1112223333332221100
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhh-cCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY-LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~-~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
...|.+..+.|.-+..- +.+..+++ ..+|.++|+ |||..|.++.+........+..+.
T Consensus 81 ----------------~~~d~~~~~~StF~~e~----~~~~~il~~~~~~sLvLl-DE~~~Gt~~~dg~~la~ail~~L~ 139 (218)
T cd03286 81 ----------------GARDDIMKGESTFMVEL----SETANILRHATPDSLVIL-DELGRGTSTHDGYAIAHAVLEYLV 139 (218)
T ss_pred ----------------CcccccccCcchHHHHH----HHHHHHHHhCCCCeEEEE-ecccCCCCchHHHHHHHHHHHHHH
Confidence 00111111222222211 12222222 256677776 999999999887666655566665
Q ss_pred cCCCCCCceEEEeccccc
Q 007024 559 SSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 559 ~~~~~~~it~IIlTK~De 576 (621)
+. .+..+++.|..-+
T Consensus 140 ~~---~~~~~i~~TH~~e 154 (218)
T cd03286 140 KK---VKCLTLFSTHYHS 154 (218)
T ss_pred Hh---cCCcEEEEeccHH
Confidence 42 2566788776433
No 475
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.17 E-value=6.6e-06 Score=80.90 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=104.9
Q ss_pred CCc-eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC---CCHHHHHHH
Q 007024 413 RKP-YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE---KDPAIVAKE 488 (621)
Q Consensus 413 Gep-~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~---~d~~~ia~~ 488 (621)
++| ..+.+.||.|||||||+-+++..++.. .++.++..|++.- +.-..+.+..+.+......+ ..++.....
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~---~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ 85 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTK---EDADRLRKLPGEPIIGVETGKGCHLDASMNLE 85 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeech---hhHHHHHhCCCCeeEEeccCCccCCcHHHHHH
Confidence 345 689999999999999999999988866 8999999998531 11112222244544433222 235556666
Q ss_pred HHHHHhhc--CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCc
Q 007024 489 AIQEATRN--GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLI 566 (621)
Q Consensus 489 al~~~~~~--~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~i 566 (621)
+++.+... ..|.+++...| ..- ....-.|. -.+-++|.+.+.|-|..... ......-
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~-~~~sp~L~-------d~~~v~VidvteGe~~P~K~------------gP~i~~a 144 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLV-CPFSPDLG-------DHLRVVVIDVTEGEDIPRKG------------GPGIFKA 144 (202)
T ss_pred HHHHHhhcCCcCCEEEEecCc-cee-cccCcchh-------hceEEEEEECCCCCCCcccC------------CCceeEe
Confidence 77766443 25888888877 210 01111111 12445557788887654210 0001236
Q ss_pred eEEEeccccccccchhHHHHhHH------HhCCcEEEEe--cCCCCCcc
Q 007024 567 DGILLTKFDTIDDKVGAALSMVY------VSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 567 t~IIlTK~De~~~~vG~~ls~~~------~~g~PI~fvg--~Gq~v~DL 607 (621)
+.+++||.|.+ ..+|.=+.... .-+.||+|+. +||...++
T Consensus 145 DllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 145 DLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred eEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence 78999999998 78887333322 2367999987 99998776
No 476
>PRK00089 era GTPase Era; Reviewed
Probab=98.16 E-value=1.7e-05 Score=82.87 Aligned_cols=119 Identities=29% Similarity=0.318 Sum_probs=65.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
.+++|+|++|||||||++.|.|. ++.+....+ |- +.....++ . ..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~------~~~~vs~~~-------~t-t~~~i~~i--~-------------------~~ 50 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ------KISIVSPKP-------QT-TRHRIRGI--V-------------------TE 50 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC------ceeecCCCC-------Cc-ccccEEEE--E-------------------Ec
Confidence 38999999999999999998752 333322111 00 00000011 0 01
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhh--hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKL--IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l--~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+...+++||+|-......+-..+... ....+.|++++|.+++.++..... ..+..+... .....+++||
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~-----~i~~~l~~~---~~pvilVlNK 122 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDE-----FILEKLKKV---KTPVILVLNK 122 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHH-----HHHHHHhhc---CCCEEEEEEC
Confidence 235678999999644332222222111 123678999888877765543321 223323221 2356899999
Q ss_pred cccc
Q 007024 574 FDTI 577 (621)
Q Consensus 574 ~De~ 577 (621)
+|..
T Consensus 123 iDl~ 126 (292)
T PRK00089 123 IDLV 126 (292)
T ss_pred CcCC
Confidence 9997
No 477
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.16 E-value=9.8e-06 Score=75.39 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+++|+|+||+||||++..|++...+.++.|.+...+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 4789999999999999999999988888998887764
No 478
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.15 E-value=1.2e-05 Score=76.94 Aligned_cols=145 Identities=21% Similarity=0.217 Sum_probs=74.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCC-------CCCHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY-------EKDPAIVAKEA 489 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~-------~~d~~~ia~~a 489 (621)
++.|+|++|+||||+++.+..... +.++.+...+...+++-.+. ...-+.++.+... ..+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~--~~~~~~i~~~~G~~~~d~~~---~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l 76 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQH--GRKIAVIENEFGEVGIDNQL---VVDTDEEIIEMNNGCICCTVRGDLIRALLDL 76 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhccc--CCcEEEEecCCCccchhHHH---HhCCCceEEEeCCCEeEeeCchhHHHHHHHH
Confidence 789999999999999999887542 44555554443222211111 1111222222211 11222222222
Q ss_pred HHHH--hhcCCCccccccchhHHhHHHHHHHHH---hhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 490 IQEA--TRNGSDVVLVDTAGRMQDNEPLMRALS---KLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 490 l~~~--~~~~~d~vliDtSGg~qqr~~LaraL~---~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
+... ....+|.+++||+|-..- ..++..+. .+......+.+++|.++....+.... ......++.
T Consensus 77 ~~~~~~~~~~~d~I~IEt~G~~~p-~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~---~~~~~~Qi~------ 146 (158)
T cd03112 77 LERLDAGKIAFDRIVIETTGLADP-GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQ---QTEAQSQIA------ 146 (158)
T ss_pred HHHHHhccCCCCEEEEECCCcCCH-HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhc---cHHHHHHHH------
Confidence 2221 234679999999997532 23343331 11223445666666667655443322 122223332
Q ss_pred CceEEEeccccc
Q 007024 565 LIDGILLTKFDT 576 (621)
Q Consensus 565 ~it~IIlTK~De 576 (621)
.-+.||+||.|.
T Consensus 147 ~ad~ivlnk~dl 158 (158)
T cd03112 147 FADRILLNKTDL 158 (158)
T ss_pred HCCEEEEecccC
Confidence 457899999984
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.15 E-value=4.7e-06 Score=98.53 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=74.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh-HhhcCc-EEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW-LLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~-L~~~~G-kV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+++|.|||++||||+|+.++.. +..+.| -|-.. ...+++.++++.+ ..+ +
T Consensus 328 ~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~--~~~~i~~~~~i~~----------~ig---~------------ 380 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAN--EPSEIPVFKEIFA----------DIG---D------------ 380 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccC--CCccccccceEEE----------ecC---C------------
Confidence 48999999999999999999853 333333 22211 1112333222210 000 0
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.......+...|++|++...+++++ ..|.++|+ |||+.|+|+.+.......++..+.. .+..+++.|.
T Consensus 381 -~~si~~~lStfS~~m~~~~~Il~~~------~~~sLvLl-DE~~~GtDp~eg~ala~aile~l~~----~~~~vIitTH 448 (782)
T PRK00409 381 -EQSIEQSLSTFSGHMTNIVRILEKA------DKNSLVLF-DELGAGTDPDEGAALAISILEYLRK----RGAKIIATTH 448 (782)
T ss_pred -ccchhhchhHHHHHHHHHHHHHHhC------CcCcEEEe-cCCCCCCCHHHHHHHHHHHHHHHHH----CCCEEEEECC
Confidence 0112233456689999887777655 46777777 9999999998875544445555543 2567888887
Q ss_pred cccc
Q 007024 574 FDTI 577 (621)
Q Consensus 574 ~De~ 577 (621)
..+.
T Consensus 449 ~~el 452 (782)
T PRK00409 449 YKEL 452 (782)
T ss_pred hHHH
Confidence 6443
No 480
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.14 E-value=1.7e-05 Score=73.47 Aligned_cols=23 Identities=39% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
..++|+|++||||||+++.|++.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999753
No 481
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.14 E-value=4.4e-05 Score=77.10 Aligned_cols=161 Identities=20% Similarity=0.190 Sum_probs=99.9
Q ss_pred EEEEEecCCCCHHHHHHHHHH-hHhhcCcEEEEcccccceeeeeehhh------hh------------------------
Q 007024 417 VVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDTFRSGAVEQLR------TH------------------------ 465 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg-~L~~~~GkV~I~~~Dt~RigaveQl~------~~------------------------ 465 (621)
+|+|+|--|+||||+.+.|+. ++...+.+|+.+.+|. .++...||- ++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Confidence 699999999999999999665 5555558999999987 222111110 00
Q ss_pred -------------hhhcccceeecCCC--------CCHHHHHHHHHHHHhhcCCCcccccc-chhHHhHHHHHHHHHhhh
Q 007024 466 -------------ARRLQVPIFEKGYE--------KDPAIVAKEAIQEATRNGSDVVLVDT-AGRMQDNEPLMRALSKLI 523 (621)
Q Consensus 466 -------------~~~L~v~l~~~~~~--------~d~~~ia~~al~~~~~~~~d~vliDt-SGg~qqr~~LaraL~~l~ 523 (621)
.++-++.+...+.. -.....+++.++.+....++++++|| +|-+| +.|-..
T Consensus 81 ~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEH----fgRg~~--- 153 (255)
T COG3640 81 ENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEH----FGRGTI--- 153 (255)
T ss_pred cCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEecccchhh----hccccc---
Confidence 00001112111111 12346777888888888899999999 77766 455556
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEE
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~f 597 (621)
...|++|+|.||+. .....++.+ ..++.... +..-.+|++|+|+. -..+...+...+.+|.-
T Consensus 154 --~~vD~vivVvDpS~--~sl~taeri----~~L~~elg-~k~i~~V~NKv~e~---e~~~~~~~~~~~~~vlg 215 (255)
T COG3640 154 --EGVDLVIVVVDPSY--KSLRTAERI----KELAEELG-IKRIFVVLNKVDEE---EELLRELAEELGLEVLG 215 (255)
T ss_pred --cCCCEEEEEeCCcH--HHHHHHHHH----HHHHHHhC-CceEEEEEeeccch---hHHHHhhhhccCCeEEE
Confidence 78899999999954 233333333 33433221 34457999999974 34455556666776543
No 482
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.14 E-value=2e-05 Score=74.94 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
+..++|+|++||||||+++.|++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 457999999999999999999875
No 483
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.09 E-value=1.7e-05 Score=72.23 Aligned_cols=89 Identities=28% Similarity=0.325 Sum_probs=51.2
Q ss_pred CCCccccccchhHHh---H---HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 497 GSDVVLVDTAGRMQD---N---EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 497 ~~d~vliDtSGg~qq---r---~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
..+..++||+|.... + ..++..+. ..++.+++|-++.......... .+..... ......++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~-----~~~d~il~v~~~~~~~~~~~~~-----~~~~~~~---~~~~~ivv 110 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVL-----ERADLILFVVDADLRADEEEEK-----LLELLRE---RGKPVLLV 110 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHH-----HhCCEEEEEEeCCCCCCHHHHH-----HHHHHHh---cCCeEEEE
Confidence 457788999984321 1 13455555 7789998887777766554431 1112211 22446899
Q ss_pred eccccccccchhHHH-------HhHHHhCCcEEEEe
Q 007024 571 LTKFDTIDDKVGAAL-------SMVYVSGAPVMFVG 599 (621)
Q Consensus 571 lTK~De~~~~vG~~l-------s~~~~~g~PI~fvg 599 (621)
+||+|... ...... ......+.|+..++
T Consensus 111 ~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 111 LNKIDLLP-EEEEEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred EEccccCC-hhhHHHHHHHHHhhcccccCCceEEEe
Confidence 99999873 222211 22334456776665
No 484
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.09 E-value=3.9e-06 Score=82.31 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=36.1
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
.+..|+ .++|+|||||||||+++.|++++.++.+.|.+.+..
T Consensus 21 ~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~ 62 (186)
T cd01130 21 AVEARK--NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTA 62 (186)
T ss_pred HHhCCC--EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCcc
Confidence 344677 999999999999999999999999988888886543
No 485
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.08 E-value=1.4e-05 Score=75.69 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=17.4
Q ss_pred EEecCCCCHHHHHHHHHHh
Q 007024 420 FVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 420 LVGpNGvGKTTlLakLAg~ 438 (621)
|+|++||||||++++|++.
T Consensus 1 iiG~~~~GKStll~~l~~~ 19 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNA 19 (176)
T ss_pred CCCCCCCcHHHHHHHHhcC
Confidence 6899999999999999874
No 486
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.08 E-value=3.6e-05 Score=70.64 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
.++.++|++|..... .+...+. .+.+.+++|-++.. .+.. ..+...+..+...........+++||+|..
T Consensus 49 ~~~~l~D~~g~~~~~-~~~~~~~-----~~~d~ii~v~d~~~-~~~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 49 VKLQIWDTAGQERFR-SITPSYY-----RGAHGAILVYDITN-RESF---ENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEEecCChHHHH-HHHHHHh-----cCCCEEEEEEECCC-HHHH---HHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 466788999976533 2444444 56788888766644 1112 222223333333221234568999999985
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCC
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYT 605 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~ 605 (621)
... .-.+..+....+.|+++++ +|+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 119 DQRQVSTEEAQQFAKENGLLFFETSAKTGENVE 151 (159)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 111 2334445555678888776 454443
No 487
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.07 E-value=5.9e-05 Score=73.92 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=61.7
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
+..+.++||+|...-.. ++.... .+.|.+++|-+++.+...... ..+..+.... ....+++||+|.
T Consensus 64 ~~~~~l~DtpG~~~~~~-~~~~~~-----~~~d~~ilV~d~~~~~~~~~~-----~~~~~~~~~~---~p~iiv~NK~Dl 129 (194)
T cd01891 64 DTKINIVDTPGHADFGG-EVERVL-----SMVDGVLLLVDASEGPMPQTR-----FVLKKALELG---LKPIVVINKIDR 129 (194)
T ss_pred CEEEEEEECCCcHHHHH-HHHHHH-----HhcCEEEEEEECCCCccHHHH-----HHHHHHHHcC---CCEEEEEECCCC
Confidence 34567899999754322 333333 567888888788776533221 2222222221 235789999998
Q ss_pred cccchhHH----HHhH-------HHhCCcEEEEe--cCCCCCcccCC--CHHHHHHHh
Q 007024 577 IDDKVGAA----LSMV-------YVSGAPVMFVG--CGQSYTDLKKL--NVKSIVKTL 619 (621)
Q Consensus 577 ~~~~vG~~----ls~~-------~~~g~PI~fvg--~Gq~v~DL~~~--~~~~~v~~L 619 (621)
.....-.. .... ...+.|+++++ +|+++.+++.. ..+++.+.|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~ 187 (194)
T cd01891 130 PDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTI 187 (194)
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHH
Confidence 63333222 2222 12367888888 89888766544 334454444
No 488
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.07 E-value=2.7e-05 Score=74.35 Aligned_cols=133 Identities=23% Similarity=0.241 Sum_probs=75.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.|+|+|++|||||||+++|+|..... ..+ ..+.+. .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--------~~~---------------~~v~~~-----~---------------- 38 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--------RKT---------------QAVEFN-----D---------------- 38 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--------ccc---------------eEEEEC-----C----------------
Confidence 69999999999999999998642110 000 001110 0
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
. -++||+|--.-+..+.+++.. ...++|.+++|-+++.+..... ..+..+. . ...-.++++|.|.
T Consensus 39 -~--~~iDtpG~~~~~~~~~~~~~~--~~~~ad~il~v~d~~~~~s~~~------~~~~~~~-~---~~~ii~v~nK~Dl 103 (158)
T PRK15467 39 -K--GDIDTPGEYFSHPRWYHALIT--TLQDVDMLIYVHGANDPESRLP------AGLLDIG-V---SKRQIAVISKTDM 103 (158)
T ss_pred -C--CcccCCccccCCHHHHHHHHH--HHhcCCEEEEEEeCCCcccccC------HHHHhcc-C---CCCeEEEEEcccc
Confidence 0 147888852111112222211 1257899999877776532211 1111111 1 1234799999998
Q ss_pred cccchhHHHHhHHHhCC--cEEEEe--cCCCCCccc
Q 007024 577 IDDKVGAALSMVYVSGA--PVMFVG--CGQSYTDLK 608 (621)
Q Consensus 577 ~~~~vG~~ls~~~~~g~--PI~fvg--~Gq~v~DL~ 608 (621)
.....-.+...+...+. |+.+++ +|+++.+|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 104 PDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred CcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 64344445566667774 999988 888887654
No 489
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.06 E-value=4.4e-05 Score=71.30 Aligned_cols=96 Identities=23% Similarity=0.236 Sum_probs=50.8
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
....++||+|....... +.... .+.|.+++|.+++.+...... ..+ ..+... . ...-.+++||+|..
T Consensus 51 ~~~~~~DtpG~~~~~~~-~~~~~-----~~ad~ii~V~d~~~~~~~~~~-~~~-~~~~~~---~--~~~~ilv~NK~Dl~ 117 (164)
T cd04171 51 KRLGFIDVPGHEKFIKN-MLAGA-----GGIDLVLLVVAADEGIMPQTR-EHL-EILELL---G--IKRGLVVLTKADLV 117 (164)
T ss_pred cEEEEEECCChHHHHHH-HHhhh-----hcCCEEEEEEECCCCccHhHH-HHH-HHHHHh---C--CCcEEEEEECcccc
Confidence 45678999997543322 22222 578898888777665433322 111 122111 1 12457899999986
Q ss_pred ccc-h----hHHHHhHHH---hCCcEEEEe--cCCCCCc
Q 007024 578 DDK-V----GAALSMVYV---SGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 578 ~~~-v----G~~ls~~~~---~g~PI~fvg--~Gq~v~D 606 (621)
... . ..+...... .+.|++.++ +|+++.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 118 DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 321 1 122222322 356887776 5555544
No 490
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=1.9e-05 Score=82.11 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=33.7
Q ss_pred cchhHHhHHHHHHHHHhh--h--hcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 505 TAGRMQDNEPLMRALSKL--I--YLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 505 tSGg~qqr~~LaraL~~l--~--~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
+|+|+++++.++++|+.. + ...+|+++|+ |||++++|+..+.
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illl-DEp~a~LD~~~~~ 229 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLL-DDVLAELDLGRQA 229 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-cCcchhcCHHHHH
Confidence 499999999999988632 1 1257888887 9999999998864
No 491
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.04 E-value=5.4e-05 Score=81.04 Aligned_cols=169 Identities=22% Similarity=0.307 Sum_probs=94.8
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce------eeeeehhhhh----------hhhc--------
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR------SGAVEQLRTH----------ARRL-------- 469 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R------igaveQl~~~----------~~~L-------- 469 (621)
+.++++|+|..|+||||+...||..+...+.+|+++++|+++ .|... ..+. .+.+
T Consensus 30 ~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~-~~~i~d~~~~~~l~~~~~~~~dv~~~ 108 (329)
T cd02033 30 KTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKA-CPTIIETSAKKKLAGEEVQIGDVCFK 108 (329)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccC-CCcccccccccccCcccceeeceEEE
Confidence 345999999999999999999999998888899999999853 11110 0110 0001
Q ss_pred --ccceeecC-------CCCCHHHHHHHHHHHHh--hcCCCccccccchhHH---hHHHHHHHHHhhhhcCCCcEEEEEe
Q 007024 470 --QVPIFEKG-------YEKDPAIVAKEAIQEAT--RNGSDVVLVDTAGRMQ---DNEPLMRALSKLIYLNNPDLVLFVG 535 (621)
Q Consensus 470 --~v~l~~~~-------~~~d~~~ia~~al~~~~--~~~~d~vliDtSGg~q---qr~~LaraL~~l~~~~~PdlILLVD 535 (621)
++.+...+ ..........+.++.+. ..++|++++|+.|+.. -...+++.+. +.+|+|-
T Consensus 109 ~~gv~~~~~g~p~~~~G~~~~~~i~~~~~l~~l~~~~w~~DyVliD~~gdv~~ggf~l~i~~~~a--------d~VIVVt 180 (329)
T cd02033 109 RDGVFAMELGGPEVGRGCGGRGIIHGFELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIARDMA--------QKVIVVG 180 (329)
T ss_pred eCCEEEecCCCCeecccccchHHHHHHHHHHHccCccccCCEEEEecCCcceeccccchhhhcCC--------ceEEEeC
Confidence 11111111 11111111223343321 1268999999988664 1123333332 4566655
Q ss_pred CCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEE
Q 007024 536 EALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597 (621)
Q Consensus 536 Ept~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~f 597 (621)
+|.. ....-...+.+.+..+...+....+.++|+++.|.. +.+-.++...++|++-
T Consensus 181 ~pe~--~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~----~~ie~~ae~lgi~vLg 236 (329)
T cd02033 181 SNDL--QSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT----GEAQAFAAHAGIPILA 236 (329)
T ss_pred CchH--HHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCc----chHHHHHHHhCCCEEE
Confidence 5522 111111223344544544433456789999998863 2356677788998744
No 492
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.04 E-value=2.8e-05 Score=73.39 Aligned_cols=119 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred EEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhcC
Q 007024 418 VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNG 497 (621)
Q Consensus 418 iaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~ 497 (621)
++|+|++|||||||++.|.+...+..+.. .+. +....++.+.. ....+
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~----~~~-----------~~~t~~~~~~~-----------------~~~~~ 49 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLP----PSK-----------ITPTVGLNIGT-----------------IEVGN 49 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCc----ccc-----------cCCccccceEE-----------------EEECC
Confidence 78999999999999999987543311110 000 00000110000 01124
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
....+.||+|....+ .+.+... ..++.+++|-+++...........+...+.... .....-.++++|+|..
T Consensus 50 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 50 ARLKFWDLGGQESLR-SLWDKYY-----AECHAIIYVIDSTDRERFEESKSALEKVLRNEA---LEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEECCCChhhH-HHHHHHh-----CCCCEEEEEEECchHHHHHHHHHHHHHHHhChh---hcCCCEEEEEEccccc
Confidence 567789999865432 2333444 677888887666543211111122222222111 1123467899999975
No 493
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.04 E-value=2.4e-05 Score=86.30 Aligned_cols=145 Identities=13% Similarity=0.081 Sum_probs=87.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
+.+++. .+.+..|+ .++|+|++|+||||+++.|++...++.+.|.+.+.... ...
T Consensus 144 iraID~-ll~I~~Gq--ri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~---------ev~------------- 198 (432)
T PRK06793 144 IKSIDS-MLTIGIGQ--KIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR---------EVK------------- 198 (432)
T ss_pred CEEEec-cceecCCc--EEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc---------cHH-------------
Confidence 456665 48888999 99999999999999999999998887777766554321 000
Q ss_pred CCHHHHHHHHHHHHhhcCCC--ccc---cccchhHHhHHHHH-HHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 480 KDPAIVAKEAIQEATRNGSD--VVL---VDTAGRMQDNEPLM-RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d--~vl---iDtSGg~qqr~~La-raL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
+..... +...+.+ +++ .|-|.+++.+.+.+ .++++..+..+-+++|++|++|...|+.. .+..+
T Consensus 199 ----e~~~~~---l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~r---eisl~ 268 (432)
T PRK06793 199 ----DFIRKE---LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARR---SVDIA 268 (432)
T ss_pred ----HHHHHH---hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHH---HHHHH
Confidence 010100 1111111 222 35578888887764 44555555556677777799999888752 22222
Q ss_pred HHHhhcCCCCCCceEEEeccccccccchhH
Q 007024 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGA 583 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~De~~~~vG~ 583 (621)
+ ......+....+.+.+-.+..+.|.
T Consensus 269 ~----~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 269 V----KELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred h----cCCCCCCeeeeeeccchhHHHHhcc
Confidence 2 2222225555665655444344443
No 494
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.03 E-value=2e-05 Score=76.47 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=23.5
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHH
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
+++++....+ .++|+|++||||||+++.|.+
T Consensus 11 ~~~~~~~~~~---ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 11 SSLGLYNKEA---KILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHhhcccCCC---EEEEECCCCCCHHHHHHHHhc
Confidence 3444443333 579999999999999999875
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.03 E-value=8.3e-06 Score=80.38 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=32.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
+++|+||+||||||+++.|++++ .++.+.+.+.|-|.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 58999999999999999999988 56788888888753
No 496
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.02 E-value=5.5e-05 Score=71.45 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=51.7
Q ss_pred CccccccchhHH---hHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 499 DVVLVDTAGRMQ---DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 499 d~vliDtSGg~q---qr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
.+.++||+|-.. ....+...+.. .....+.+++|-+++...+.......+.+.+....... ....-.+++||+|
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~-~~~p~ivv~NK~D 125 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLR--HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL-LEKPRIVVLNKID 125 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHH--HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc-cccccEEEEEchh
Confidence 567889999421 11112222211 11346788887777765344444433333343332110 1233478999999
Q ss_pred ccccch-hHHH-HhHHH-hCCcEEEEe--cCCCCCcc
Q 007024 576 TIDDKV-GAAL-SMVYV-SGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 576 e~~~~v-G~~l-s~~~~-~g~PI~fvg--~Gq~v~DL 607 (621)
...... -..+ ..... .+.|+..++ +|+++.++
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 162 (170)
T cd01898 126 LLDEEELFELLKELLKELWGKPVFPISALTGEGLDEL 162 (170)
T ss_pred cCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHH
Confidence 863221 1222 22223 256766665 56555443
No 497
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.02 E-value=2.8e-05 Score=71.78 Aligned_cols=92 Identities=27% Similarity=0.359 Sum_probs=48.9
Q ss_pred CCccccccchhHHhHH-----HHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 498 SDVVLVDTAGRMQDNE-----PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~-----~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
..+.++||+|...... ...+... ...+++++++|.+++........ +.+.. .......+++|
T Consensus 49 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~---~~~~~~~~v~v~d~~~~~~~~~~-----~~~~~-----~~~~~vi~v~n 115 (157)
T cd04164 49 IPVRLIDTAGIRETEDEIEKIGIERARE---AIEEADLVLFVIDASRGLDEEDL-----EILEL-----PADKPIIVVLN 115 (157)
T ss_pred EEEEEEECCCcCCCcchHHHHHHHHHHH---HHhhCCEEEEEEECCCCCCHHHH-----HHHHh-----hcCCCEEEEEE
Confidence 3567889988432211 1111111 12577888888888765444332 12211 12245689999
Q ss_pred cccccccchhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 573 KFDTIDDKVGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 573 K~De~~~~vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|+|... .... .....+.|+..++ +|..+++
T Consensus 116 K~D~~~-~~~~---~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 116 KSDLLP-DSEL---LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred chhcCC-cccc---ccccCCCceEEEECCCCCCHHH
Confidence 999873 2222 2334456777776 4444444
No 498
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.98 E-value=6.3e-05 Score=83.39 Aligned_cols=52 Identities=15% Similarity=0.123 Sum_probs=45.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+.+++++ +.+.+|+ +++|+|+||+||||+++.|+++..++.|.|.+.|...
T Consensus 145 g~~vid~l-~~i~~Gq--~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg 196 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQ--RVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERG 196 (438)
T ss_pred chhhhhee-eeecCCc--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCC
Confidence 35677888 8899999 9999999999999999999999999988888876543
No 499
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.98 E-value=0.00011 Score=69.23 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=39.0
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
+.+..++||+|...... +..... ...|.+++|.++..+...... ..+..+.... ..-.+++||+|.
T Consensus 49 ~~~~~iiDtpG~~~~~~-~~~~~~-----~~~d~il~v~d~~~~~~~~~~-----~~~~~~~~~~---~p~ivv~NK~Dl 114 (168)
T cd01887 49 IPGITFIDTPGHEAFTN-MRARGA-----SLTDIAILVVAADDGVMPQTI-----EAIKLAKAAN---VPFIVALNKIDK 114 (168)
T ss_pred cceEEEEeCCCcHHHHH-HHHHHH-----hhcCEEEEEEECCCCccHHHH-----HHHHHHHHcC---CCEEEEEEceec
Confidence 45788999999654322 112122 467888888888766533221 2222222222 235889999997
Q ss_pred c
Q 007024 577 I 577 (621)
Q Consensus 577 ~ 577 (621)
.
T Consensus 115 ~ 115 (168)
T cd01887 115 P 115 (168)
T ss_pred c
Confidence 6
No 500
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.98 E-value=4.8e-05 Score=78.95 Aligned_cols=144 Identities=22% Similarity=0.213 Sum_probs=74.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc--ccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~--Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
.++|+|++|||||||++.|++. ++.+... .|.|- ...++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~------~~~~vs~~~~TTr~----------~i~~i~~--------------------- 44 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ------KISITSPKAQTTRN----------RISGIHT--------------------- 44 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------cEeecCCCCCcccC----------cEEEEEE---------------------
Confidence 6999999999999999999763 2322221 11110 0001100
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHh--hhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSK--LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~--l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
..+...+++||+|-......+.+.+.+ .....+.|++++|.+++...... .. .+..+.... ....+++|
T Consensus 45 ~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~---i~~~l~~~~---~p~ilV~N 115 (270)
T TIGR00436 45 TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EF---VLTKLQNLK---RPVVLTRN 115 (270)
T ss_pred cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HH---HHHHHHhcC---CCEEEEEE
Confidence 012346789999854321122222211 01225789999888887654332 12 222222221 34579999
Q ss_pred cccccccchhHH--H-HhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 573 KFDTIDDKVGAA--L-SMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 573 K~De~~~~vG~~--l-s~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
|+|.. .+-... + .+....+. ++..++ +|+++++|
T Consensus 116 K~Dl~-~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L 155 (270)
T TIGR00436 116 KLDNK-FKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL 155 (270)
T ss_pred CeeCC-CHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence 99986 332221 1 11112222 677776 67666543
Done!