Query 007024
Match_columns 621
No_of_seqs 500 out of 3631
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fh5_A Signal recognition part 100.0 3.4E-43 1.2E-47 338.4 11.4 143 1-152 10-161 (185)
2 3e70_C DPA, signal recognition 100.0 7.5E-40 2.6E-44 345.8 21.5 282 325-620 42-323 (328)
3 3dm5_A SRP54, signal recogniti 100.0 2.7E-38 9.2E-43 344.8 26.2 287 315-620 8-294 (443)
4 2og2_A Putative signal recogni 100.0 4.3E-38 1.5E-42 335.8 26.3 262 333-621 84-359 (359)
5 3b9q_A Chloroplast SRP recepto 100.0 4.7E-38 1.6E-42 328.6 24.5 268 324-621 21-302 (302)
6 3kl4_A SRP54, signal recogniti 100.0 1.5E-37 5E-42 338.8 24.9 287 316-620 5-293 (433)
7 2yhs_A FTSY, cell division pro 100.0 1E-37 3.5E-42 343.2 20.7 283 313-621 192-494 (503)
8 2ffh_A Protein (FFH); SRP54, s 100.0 6.5E-36 2.2E-40 325.3 26.5 285 316-620 8-292 (425)
9 1j8m_F SRP54, signal recogniti 100.0 4.6E-36 1.6E-40 312.8 24.1 288 314-620 4-294 (297)
10 1rj9_A FTSY, signal recognitio 100.0 1.5E-36 5E-41 317.6 20.3 276 318-621 12-303 (304)
11 1zu4_A FTSY; GTPase, signal re 100.0 1.2E-35 4E-40 312.8 22.3 282 317-621 18-310 (320)
12 1vma_A Cell division protein F 100.0 2.1E-35 7.1E-40 309.1 22.4 267 319-621 32-305 (306)
13 1ls1_A Signal recognition part 100.0 8.6E-34 2.9E-38 295.3 24.9 284 317-620 9-292 (295)
14 2xxa_A Signal recognition part 100.0 6.8E-33 2.3E-37 302.8 26.3 287 316-620 8-295 (433)
15 2v3c_C SRP54, signal recogniti 100.0 1.1E-31 3.9E-36 293.0 24.6 286 315-620 6-293 (432)
16 2j37_W Signal recognition part 100.0 2.2E-31 7.7E-36 295.3 21.0 286 317-620 10-295 (504)
17 2px0_A Flagellar biosynthesis 100.0 1.3E-29 4.4E-34 264.1 19.6 259 332-621 35-296 (296)
18 3fvq_A Fe(3+) IONS import ATP- 99.9 9.3E-24 3.2E-28 225.0 15.1 184 399-604 16-218 (359)
19 3tui_C Methionine import ATP-b 99.9 5.5E-24 1.9E-28 227.1 12.1 181 400-604 41-243 (366)
20 3gfo_A Cobalt import ATP-bindi 99.9 9.5E-24 3.3E-28 217.6 12.4 180 401-605 22-224 (275)
21 4g1u_C Hemin import ATP-bindin 99.9 2.1E-23 7E-28 214.1 14.7 184 399-605 23-228 (266)
22 3tif_A Uncharacterized ABC tra 99.9 1.4E-23 4.8E-28 211.4 12.9 183 400-605 18-225 (235)
23 2pcj_A ABC transporter, lipopr 99.9 1.2E-23 4E-28 210.4 11.0 181 400-604 17-218 (224)
24 1b0u_A Histidine permease; ABC 99.9 2.9E-23 9.8E-28 212.5 13.4 182 400-604 19-232 (262)
25 3rlf_A Maltose/maltodextrin im 99.9 2.8E-23 9.7E-28 222.8 13.9 184 399-604 15-213 (381)
26 2olj_A Amino acid ABC transpor 99.9 3.9E-23 1.3E-27 211.7 14.0 182 400-604 37-238 (263)
27 1g6h_A High-affinity branched- 99.9 5.3E-23 1.8E-27 209.8 14.3 181 400-604 20-232 (257)
28 1ji0_A ABC transporter; ATP bi 99.9 6.9E-23 2.4E-27 206.9 14.5 181 400-604 19-218 (240)
29 1z47_A CYSA, putative ABC-tran 99.9 4.6E-23 1.6E-27 219.5 13.4 183 400-604 28-225 (355)
30 1vpl_A ABC transporter, ATP-bi 99.9 3.9E-23 1.3E-27 211.0 12.2 182 400-604 28-225 (256)
31 2yyz_A Sugar ABC transporter, 99.9 8.8E-23 3E-27 217.7 13.3 183 400-604 16-213 (359)
32 2it1_A 362AA long hypothetical 99.9 7.3E-23 2.5E-27 218.6 12.5 183 400-604 16-213 (362)
33 1oxx_K GLCV, glucose, ABC tran 99.9 4.3E-23 1.5E-27 219.8 10.6 181 402-604 20-220 (353)
34 1v43_A Sugar-binding transport 99.9 7.9E-23 2.7E-27 219.1 12.6 183 400-604 24-221 (372)
35 3d31_A Sulfate/molybdate ABC t 99.9 5.1E-23 1.7E-27 218.8 11.0 179 402-604 15-207 (348)
36 1sgw_A Putative ABC transporte 99.9 3.3E-23 1.1E-27 206.2 8.6 159 401-573 23-191 (214)
37 1g29_1 MALK, maltose transport 99.9 1.1E-22 3.9E-27 218.0 13.2 183 400-604 16-219 (372)
38 2yz2_A Putative ABC transporte 99.9 1.5E-22 5.2E-27 207.5 13.5 161 400-573 20-196 (266)
39 2ihy_A ABC transporter, ATP-bi 99.9 8.5E-23 2.9E-27 210.9 11.2 181 400-604 34-242 (279)
40 2onk_A Molybdate/tungstate ABC 99.9 8E-23 2.7E-27 206.7 10.6 180 402-604 14-206 (240)
41 2qi9_C Vitamin B12 import ATP- 99.9 4.4E-22 1.5E-26 202.4 13.0 178 401-604 14-212 (249)
42 2nq2_C Hypothetical ABC transp 99.9 6.6E-22 2.2E-26 201.4 12.8 178 400-604 18-207 (253)
43 2ff7_A Alpha-hemolysin translo 99.9 4.4E-22 1.5E-26 202.0 10.6 175 400-604 22-222 (247)
44 2ixe_A Antigen peptide transpo 99.9 1.8E-21 6.1E-26 200.1 12.3 179 400-604 32-235 (271)
45 2pjz_A Hypothetical protein ST 99.9 1.4E-21 4.6E-26 200.3 11.3 153 400-573 18-183 (263)
46 2d2e_A SUFC protein; ABC-ATPas 99.9 6.1E-22 2.1E-26 201.1 8.6 182 400-604 16-223 (250)
47 1mv5_A LMRA, multidrug resista 99.8 1E-21 3.4E-26 198.7 8.4 177 400-605 15-217 (243)
48 2zu0_C Probable ATP-dependent 99.8 3E-21 1E-25 198.0 10.9 161 400-573 33-222 (267)
49 3nh6_A ATP-binding cassette SU 99.8 1.8E-21 6.1E-26 203.6 8.5 176 400-605 67-268 (306)
50 2cbz_A Multidrug resistance-as 99.8 6.8E-21 2.3E-25 192.0 12.2 176 400-604 18-207 (237)
51 2ghi_A Transport protein; mult 99.8 4.1E-21 1.4E-25 196.3 10.6 174 400-604 33-232 (260)
52 3gd7_A Fusion complex of cysti 99.8 3.5E-21 1.2E-25 207.5 9.6 174 399-604 33-232 (390)
53 2pze_A Cystic fibrosis transme 99.8 6.6E-21 2.3E-25 191.1 10.9 171 400-604 21-208 (229)
54 2bbs_A Cystic fibrosis transme 99.8 4.4E-20 1.5E-24 191.6 9.7 170 400-604 51-237 (290)
55 3b5x_A Lipid A export ATP-bind 99.8 2E-19 6.7E-24 203.3 12.2 176 400-604 356-557 (582)
56 2yl4_A ATP-binding cassette SU 99.8 2E-19 6.7E-24 203.8 11.1 177 400-604 357-560 (595)
57 4a82_A Cystic fibrosis transme 99.8 1.7E-19 5.8E-24 203.7 9.3 176 400-605 354-555 (578)
58 3b60_A Lipid A export ATP-bind 99.8 2.1E-19 7.1E-24 203.1 9.7 176 400-604 356-557 (582)
59 3qf4_A ABC transporter, ATP-bi 99.8 3.2E-19 1.1E-23 201.8 10.4 176 400-605 356-557 (587)
60 3qf4_B Uncharacterized ABC tra 99.8 2.4E-19 8.3E-24 203.2 7.7 176 400-605 368-569 (598)
61 3ozx_A RNAse L inhibitor; ATP 99.7 1.5E-18 5E-23 194.4 10.0 154 403-573 284-444 (538)
62 3bk7_A ABC transporter ATP-bin 99.7 1.4E-18 4.9E-23 197.1 8.0 153 403-573 372-530 (607)
63 1yqt_A RNAse L inhibitor; ATP- 99.7 1.7E-18 5.8E-23 194.0 5.6 153 403-573 302-460 (538)
64 1yqt_A RNAse L inhibitor; ATP- 99.7 4.2E-18 1.4E-22 190.8 7.9 159 401-573 36-216 (538)
65 3bk7_A ABC transporter ATP-bin 99.7 7.4E-18 2.5E-22 191.2 7.6 159 401-573 106-286 (607)
66 4f4c_A Multidrug resistance pr 99.7 2.3E-17 8E-22 201.9 12.2 176 401-605 1093-1295(1321)
67 3j16_B RLI1P; ribosome recycli 99.7 2.7E-17 9.1E-22 186.6 10.5 153 402-573 362-526 (608)
68 3ux8_A Excinuclease ABC, A sub 99.7 6.2E-17 2.1E-21 185.7 11.5 162 399-573 30-262 (670)
69 3g5u_A MCG1178, multidrug resi 99.7 7.8E-17 2.7E-21 196.8 12.1 176 401-605 1047-1249(1284)
70 3g5u_A MCG1178, multidrug resi 99.7 5.2E-17 1.8E-21 198.4 10.5 155 400-573 403-583 (1284)
71 4f4c_A Multidrug resistance pr 99.7 6.6E-17 2.3E-21 197.9 11.5 155 400-573 431-611 (1321)
72 3j16_B RLI1P; ribosome recycli 99.7 8.8E-17 3E-21 182.3 8.8 156 403-573 94-279 (608)
73 2iw3_A Elongation factor 3A; a 99.6 1.9E-16 6.5E-21 186.7 10.6 59 401-463 687-745 (986)
74 3ozx_A RNAse L inhibitor; ATP 99.6 8E-17 2.7E-21 180.4 6.6 149 411-573 23-195 (538)
75 2iw3_A Elongation factor 3A; a 99.6 2.4E-15 8.2E-20 177.4 13.0 164 400-603 448-623 (986)
76 1tq4_A IIGP1, interferon-induc 99.6 3.2E-17 1.1E-21 177.8 -5.8 151 401-558 37-213 (413)
77 3ux8_A Excinuclease ABC, A sub 99.5 1.7E-14 5.9E-19 165.4 12.5 64 499-573 538-604 (670)
78 4gp7_A Metallophosphoesterase; 99.5 1.9E-15 6.5E-20 144.0 2.2 115 405-545 1-118 (171)
79 2npi_A Protein CLP1; CLP1-PCF1 99.5 4E-16 1.4E-20 171.6 -3.0 178 405-604 130-329 (460)
80 3b85_A Phosphate starvation-in 99.4 3E-15 1E-19 148.0 -2.4 133 411-577 20-161 (208)
81 4aby_A DNA repair protein RECN 99.4 8.2E-14 2.8E-18 149.8 8.2 86 505-613 296-387 (415)
82 3sop_A Neuronal-specific septi 99.4 1.1E-14 3.8E-19 149.4 1.4 142 416-578 3-154 (270)
83 1ye8_A Protein THEP1, hypothet 99.4 2.7E-13 9.4E-18 130.6 9.9 121 417-573 2-138 (178)
84 2vf7_A UVRA2, excinuclease ABC 99.4 3.2E-13 1.1E-17 157.7 10.0 75 488-573 712-791 (842)
85 2vx8_A Nucleoporin-like protei 99.4 6.6E-13 2.3E-17 127.1 7.6 113 1-123 44-159 (169)
86 2r6f_A Excinuclease ABC subuni 99.4 1.1E-12 3.7E-17 154.1 10.5 64 499-573 840-906 (972)
87 3pih_A Uvrabc system protein A 99.3 2.8E-12 9.6E-17 151.0 12.4 64 499-573 800-866 (916)
88 1z6g_A Guanylate kinase; struc 99.3 1.7E-14 5.9E-19 142.9 -6.5 170 401-589 11-206 (218)
89 2ygr_A Uvrabc system protein A 99.3 3.2E-12 1.1E-16 150.6 11.2 64 499-573 858-924 (993)
90 2qm8_A GTPase/ATPase; G protei 99.3 9.8E-12 3.3E-16 131.4 11.5 148 401-577 43-206 (337)
91 3aez_A Pantothenate kinase; tr 99.3 1.5E-12 5.2E-17 136.2 3.3 115 410-543 87-209 (312)
92 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 2E-11 6.7E-16 130.4 11.6 88 500-604 275-363 (365)
93 2pt7_A CAG-ALFA; ATPase, prote 99.2 4.1E-12 1.4E-16 133.9 6.0 92 402-539 160-251 (330)
94 1e69_A Chromosome segregation 99.1 1.1E-10 3.7E-15 122.2 10.1 67 500-574 215-281 (322)
95 2eyu_A Twitching motility prot 99.1 1.9E-10 6.6E-15 117.3 11.5 98 401-546 15-113 (261)
96 2v9p_A Replication protein E1; 99.1 8.2E-12 2.8E-16 130.3 1.0 115 401-546 114-229 (305)
97 1cr0_A DNA primase/helicase; R 99.1 7.2E-11 2.5E-15 121.3 7.5 53 399-453 21-74 (296)
98 1znw_A Guanylate kinase, GMP k 99.1 1.5E-11 5.2E-16 120.1 0.6 158 400-573 9-186 (207)
99 3thx_B DNA mismatch repair pro 99.0 2.8E-10 9.6E-15 134.2 9.7 138 400-577 660-798 (918)
100 2p67_A LAO/AO transport system 99.0 8.9E-10 3.1E-14 116.3 12.0 183 402-607 45-251 (341)
101 2w0m_A SSO2452; RECA, SSPF, un 99.0 8.2E-10 2.8E-14 107.6 10.5 52 400-453 9-61 (235)
102 1tf7_A KAIC; homohexamer, hexa 99.0 5.7E-10 2E-14 124.4 10.3 133 409-574 277-416 (525)
103 3thx_A DNA mismatch repair pro 99.0 5.8E-10 2E-14 131.8 10.6 137 401-577 650-787 (934)
104 1ewq_A DNA mismatch repair pro 99.0 3.9E-10 1.3E-14 130.9 8.9 128 401-575 567-698 (765)
105 1tf7_A KAIC; homohexamer, hexa 99.0 1.2E-09 4.1E-14 121.7 12.2 144 399-573 24-183 (525)
106 2ehv_A Hypothetical protein PH 99.0 7.2E-10 2.5E-14 109.7 8.3 43 409-453 26-70 (251)
107 2qnr_A Septin-2, protein NEDD5 99.0 6.4E-11 2.2E-15 123.1 0.5 175 400-606 11-203 (301)
108 3p32_A Probable GTPase RV1496/ 99.0 3.2E-09 1.1E-13 112.6 13.1 173 414-608 78-275 (355)
109 2jeo_A Uridine-cytidine kinase 99.0 1.1E-10 3.7E-15 117.1 1.3 128 399-543 11-148 (245)
110 2i3b_A HCR-ntpase, human cance 98.9 1.6E-10 5.6E-15 112.3 2.2 35 417-453 3-37 (189)
111 2o8b_B DNA mismatch repair pro 98.9 1.6E-09 5.5E-14 129.4 10.9 134 401-574 770-911 (1022)
112 1pzn_A RAD51, DNA repair and r 98.9 3.4E-09 1.2E-13 112.4 11.7 218 315-574 42-285 (349)
113 2www_A Methylmalonic aciduria 98.9 3.3E-09 1.1E-13 112.5 11.2 137 416-577 75-225 (349)
114 4a74_A DNA repair and recombin 98.9 2.7E-09 9.3E-14 104.2 8.5 42 410-453 22-70 (231)
115 3qkt_A DNA double-strand break 98.9 1E-08 3.5E-13 108.0 13.3 68 501-574 245-313 (339)
116 1nlf_A Regulatory protein REPA 98.9 9.3E-09 3.2E-13 104.8 11.5 141 409-575 26-181 (279)
117 1wb9_A DNA mismatch repair pro 98.8 4.4E-09 1.5E-13 122.7 9.9 136 401-577 596-732 (800)
118 3jvv_A Twitching mobility prot 98.8 1.1E-08 3.9E-13 108.7 10.5 40 409-450 119-159 (356)
119 1htw_A HI0065; nucleotide-bind 98.8 1.1E-09 3.7E-14 103.5 2.1 50 401-453 21-70 (158)
120 2obl_A ESCN; ATPase, hydrolase 98.8 5.1E-09 1.7E-13 111.1 7.3 51 399-452 58-108 (347)
121 2dpy_A FLII, flagellum-specifi 98.8 7.6E-09 2.6E-13 113.1 8.0 49 400-451 145-193 (438)
122 2qag_C Septin-7; cell cycle, c 98.8 2.1E-09 7.1E-14 116.8 3.5 168 400-599 24-207 (418)
123 2e87_A Hypothetical protein PH 98.7 7.5E-09 2.6E-13 109.7 6.8 147 414-608 166-327 (357)
124 3asz_A Uridine kinase; cytidin 98.7 2.8E-10 9.5E-15 110.7 -4.4 120 412-546 5-136 (211)
125 1lw7_A Transcriptional regulat 98.7 2.9E-09 1E-13 113.1 3.1 45 402-448 157-207 (365)
126 2ewv_A Twitching motility prot 98.7 4.1E-08 1.4E-12 105.0 11.1 41 410-452 133-174 (372)
127 2cvh_A DNA repair and recombin 98.6 3.9E-08 1.3E-12 95.3 7.3 130 409-574 16-155 (220)
128 1pui_A ENGB, probable GTP-bind 98.6 2.4E-08 8.3E-13 96.1 5.2 145 401-558 16-197 (210)
129 3ec2_A DNA replication protein 98.6 2.8E-07 9.6E-12 87.2 12.3 34 409-444 34-67 (180)
130 3szr_A Interferon-induced GTP- 98.6 1.3E-08 4.5E-13 115.5 3.6 37 417-453 47-84 (608)
131 2qag_B Septin-6, protein NEDD5 98.6 7.8E-08 2.7E-12 104.5 9.0 179 403-599 30-239 (427)
132 2gza_A Type IV secretion syste 98.5 5.2E-08 1.8E-12 103.7 5.8 50 401-452 163-212 (361)
133 1n0w_A DNA repair protein RAD5 98.5 2.8E-07 9.5E-12 90.6 10.2 42 410-453 21-69 (243)
134 2o5v_A DNA replication and rep 98.5 1.1E-06 3.8E-11 93.6 14.9 78 504-604 265-346 (359)
135 2kjq_A DNAA-related protein; s 98.5 7.1E-07 2.4E-11 83.1 11.0 30 412-443 35-64 (149)
136 3euj_A Chromosome partition pr 98.5 4.5E-08 1.5E-12 108.0 2.9 51 400-453 17-67 (483)
137 2f1r_A Molybdopterin-guanine d 98.4 9.4E-09 3.2E-13 98.4 -2.7 102 417-521 4-120 (171)
138 1yrb_A ATP(GTP)binding protein 98.4 1.2E-06 4.1E-11 87.4 10.2 155 415-577 14-184 (262)
139 2rcn_A Probable GTPase ENGC; Y 98.4 1E-07 3.5E-12 101.4 2.3 105 412-520 214-329 (358)
140 4dzz_A Plasmid partitioning pr 98.3 5.3E-06 1.8E-10 79.4 13.3 157 417-596 3-162 (206)
141 3izq_1 HBS1P, elongation facto 98.3 8.8E-07 3E-11 100.6 9.0 106 317-438 41-190 (611)
142 1odf_A YGR205W, hypothetical 3 98.3 8.9E-08 3.1E-12 99.0 0.7 119 413-544 29-168 (290)
143 1sq5_A Pantothenate kinase; P- 98.3 2.2E-07 7.6E-12 96.5 3.4 42 411-454 78-121 (308)
144 2wsm_A Hydrogenase expression/ 98.3 1.2E-06 4.1E-11 85.0 8.5 164 415-607 30-204 (221)
145 3lda_A DNA repair protein RAD5 98.3 2.6E-06 9E-11 91.9 11.8 220 314-574 89-327 (400)
146 3t34_A Dynamin-related protein 98.3 1.8E-06 6.1E-11 91.3 9.4 41 401-446 25-67 (360)
147 3tr0_A Guanylate kinase, GMP k 98.3 4.5E-07 1.5E-11 87.0 4.1 53 408-466 2-63 (205)
148 2bbw_A Adenylate kinase 4, AK4 98.2 2E-07 6.9E-12 93.0 1.1 36 416-451 28-66 (246)
149 2wji_A Ferrous iron transport 98.2 1.2E-06 4.2E-11 81.2 5.9 143 416-607 4-155 (165)
150 2dr3_A UPF0273 protein PH0284; 98.2 4.6E-06 1.6E-10 81.9 10.2 43 409-453 19-61 (247)
151 1sxj_E Activator 1 40 kDa subu 98.2 3.1E-06 1.1E-10 88.2 9.4 37 417-453 38-75 (354)
152 1s96_A Guanylate kinase, GMP k 98.2 5E-07 1.7E-11 89.6 2.7 55 409-465 12-73 (219)
153 3dz8_A RAS-related protein RAB 98.2 2.3E-05 7.8E-10 74.1 13.5 149 415-607 23-176 (191)
154 3lnc_A Guanylate kinase, GMP k 98.1 5.1E-07 1.7E-11 89.1 2.0 37 402-440 16-53 (231)
155 1oix_A RAS-related protein RAB 98.1 2.2E-06 7.6E-11 81.8 6.1 38 415-452 29-77 (191)
156 3lxx_A GTPase IMAP family memb 98.1 1.1E-05 3.9E-10 79.7 11.1 145 414-599 28-189 (239)
157 2yv5_A YJEQ protein; hydrolase 98.1 3.4E-07 1.2E-11 95.0 -0.1 49 412-463 164-224 (302)
158 2f9l_A RAB11B, member RAS onco 98.1 7.2E-06 2.5E-10 78.4 9.3 24 416-439 6-29 (199)
159 2dyk_A GTP-binding protein; GT 98.1 7E-06 2.4E-10 74.6 8.5 93 499-606 50-151 (161)
160 2r6a_A DNAB helicase, replicat 98.1 2.7E-05 9.2E-10 85.1 14.6 184 373-574 157-363 (454)
161 1ega_A Protein (GTP-binding pr 98.1 9.5E-06 3.2E-10 83.9 10.5 146 416-605 9-163 (301)
162 3vaa_A Shikimate kinase, SK; s 98.1 2.3E-06 7.8E-11 82.6 5.2 42 396-439 8-49 (199)
163 1udx_A The GTP-binding protein 98.1 4E-07 1.4E-11 98.7 -0.2 33 404-438 148-180 (416)
164 1mky_A Probable GTP-binding pr 98.1 7.1E-06 2.4E-10 89.2 9.4 26 414-439 179-204 (439)
165 3iev_A GTP-binding protein ERA 98.1 6.5E-06 2.2E-10 85.4 8.7 148 412-605 7-170 (308)
166 1z0f_A RAB14, member RAS oncog 98.1 6.4E-06 2.2E-10 76.1 7.6 149 415-607 15-168 (179)
167 1r2q_A RAS-related protein RAB 98.1 1.4E-05 4.8E-10 72.9 9.8 148 415-606 6-158 (170)
168 1zp6_A Hypothetical protein AT 98.1 2E-06 6.9E-11 81.6 4.2 40 410-453 6-45 (191)
169 4dhe_A Probable GTP-binding pr 98.1 9.7E-06 3.3E-10 78.4 9.0 149 415-607 29-201 (223)
170 2zr9_A Protein RECA, recombina 98.0 8.5E-06 2.9E-10 86.3 9.0 41 410-452 58-98 (349)
171 2wjg_A FEOB, ferrous iron tran 98.0 6.4E-06 2.2E-10 77.3 7.2 141 415-606 7-158 (188)
172 1ky3_A GTP-binding protein YPT 98.0 7.6E-06 2.6E-10 75.7 7.6 153 415-607 8-168 (182)
173 1hyq_A MIND, cell division inh 98.0 6.2E-05 2.1E-09 75.2 14.8 163 417-596 4-193 (263)
174 3tkl_A RAS-related protein RAB 98.0 1E-05 3.4E-10 76.3 8.5 149 415-607 16-169 (196)
175 2oap_1 GSPE-2, type II secreti 98.0 1.1E-06 3.8E-11 97.7 2.1 51 401-453 248-298 (511)
176 1z06_A RAS-related protein RAB 98.0 5.6E-06 1.9E-10 78.1 6.7 143 415-599 20-165 (189)
177 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 1.1E-05 3.8E-10 75.2 8.3 65 499-574 52-122 (148)
178 3iby_A Ferrous iron transport 98.0 1E-05 3.4E-10 81.8 8.5 138 417-606 3-156 (256)
179 3clv_A RAB5 protein, putative; 98.0 7.4E-06 2.5E-10 76.9 7.1 99 498-608 93-195 (208)
180 2a9k_A RAS-related protein RAL 98.0 2.1E-05 7.3E-10 73.0 10.1 149 415-607 18-171 (187)
181 1u8z_A RAS-related protein RAL 98.0 2.7E-05 9.1E-10 70.7 10.5 148 416-607 5-157 (168)
182 2g6b_A RAS-related protein RAB 98.0 7.6E-06 2.6E-10 75.9 6.8 150 415-607 10-164 (180)
183 1ek0_A Protein (GTP-binding pr 98.0 1.6E-05 5.6E-10 72.5 9.0 98 499-606 53-158 (170)
184 1u0l_A Probable GTPase ENGC; p 98.0 1.6E-06 5.3E-11 89.9 2.3 40 412-453 168-210 (301)
185 3q85_A GTP-binding protein REM 98.0 6.6E-06 2.3E-10 75.5 6.3 149 416-607 3-157 (169)
186 2dy1_A Elongation factor G; tr 98.0 1E-05 3.4E-10 92.8 9.1 132 410-577 6-139 (665)
187 3c8u_A Fructokinase; YP_612366 98.0 3.9E-06 1.4E-10 81.5 4.9 38 411-450 20-60 (208)
188 3ea0_A ATPase, para family; al 98.0 5.8E-05 2E-09 74.2 13.2 164 416-597 5-203 (245)
189 2efe_B Small GTP-binding prote 98.0 1.5E-05 5.2E-10 73.9 8.5 148 415-606 12-164 (181)
190 4dcu_A GTP-binding protein ENG 98.0 7E-06 2.4E-10 89.7 7.0 114 416-577 24-144 (456)
191 2oil_A CATX-8, RAS-related pro 98.0 1.3E-05 4.5E-10 75.7 8.0 149 415-607 25-178 (193)
192 2bov_A RAla, RAS-related prote 98.0 3.5E-05 1.2E-09 73.1 10.9 149 415-607 14-167 (206)
193 2y8e_A RAB-protein 6, GH09086P 98.0 1.4E-05 4.9E-10 73.6 7.9 98 499-606 64-166 (179)
194 1z2a_A RAS-related protein RAB 98.0 9.1E-06 3.1E-10 74.2 6.2 148 415-607 5-157 (168)
195 1svi_A GTP-binding protein YSX 98.0 4.9E-05 1.7E-09 71.6 11.5 24 414-437 22-45 (195)
196 1z0j_A RAB-22, RAS-related pro 97.9 1.6E-05 5.5E-10 72.7 7.8 147 416-606 7-158 (170)
197 3tqc_A Pantothenate kinase; bi 97.9 6.1E-06 2.1E-10 86.6 5.5 44 412-455 89-134 (321)
198 1p9r_A General secretion pathw 97.9 3.4E-06 1.2E-10 91.5 3.7 40 412-453 166-205 (418)
199 2ce2_X GTPase HRAS; signaling 97.9 1.8E-05 6.2E-10 71.6 8.0 148 416-607 4-155 (166)
200 2fg5_A RAB-22B, RAS-related pr 97.9 1.5E-05 5.3E-10 75.5 7.8 148 415-606 23-175 (192)
201 1rz3_A Hypothetical protein rb 97.9 6.5E-06 2.2E-10 79.6 5.2 40 416-455 23-62 (201)
202 1cp2_A CP2, nitrogenase iron p 97.9 6.3E-05 2.2E-09 75.3 12.6 171 417-596 3-205 (269)
203 2nzj_A GTP-binding protein REM 97.9 1.3E-05 4.4E-10 73.8 7.0 149 415-607 4-159 (175)
204 2fn4_A P23, RAS-related protei 97.9 1.7E-05 5.7E-10 73.4 7.7 149 415-607 9-162 (181)
205 1kao_A RAP2A; GTP-binding prot 97.9 8.5E-06 2.9E-10 74.0 5.5 99 499-606 52-155 (167)
206 3a1s_A Iron(II) transport prot 97.9 8.1E-06 2.8E-10 82.6 5.7 140 416-606 6-156 (258)
207 3pih_A Uvrabc system protein A 97.9 3.5E-06 1.2E-10 99.5 3.4 64 499-573 459-524 (916)
208 2hxs_A RAB-26, RAS-related pro 97.9 1.5E-05 5E-10 73.8 7.0 153 415-607 6-163 (178)
209 1lvg_A Guanylate kinase, GMP k 97.9 4.5E-06 1.5E-10 80.9 3.4 27 412-440 3-29 (198)
210 1nij_A Hypothetical protein YJ 97.9 3.4E-05 1.2E-09 80.4 10.3 37 417-453 6-50 (318)
211 3la6_A Tyrosine-protein kinase 97.9 5.5E-05 1.9E-09 77.8 11.7 148 415-577 92-267 (286)
212 2bcg_Y Protein YP2, GTP-bindin 97.9 8.6E-06 3E-10 77.9 5.1 150 415-608 8-162 (206)
213 3a00_A Guanylate kinase, GMP k 97.9 3.1E-06 1.1E-10 80.8 1.9 29 416-444 2-30 (186)
214 1zbd_A Rabphilin-3A; G protein 97.9 2.5E-05 8.5E-10 74.4 8.1 100 498-607 57-161 (203)
215 4dsu_A GTPase KRAS, isoform 2B 97.9 1.4E-05 4.7E-10 74.6 6.1 149 415-607 4-156 (189)
216 2erx_A GTP-binding protein DI- 97.9 4.2E-05 1.4E-09 69.9 9.3 101 498-606 51-156 (172)
217 3b1v_A Ferrous iron uptake tra 97.9 1.7E-05 5.9E-10 81.0 7.3 141 415-606 3-153 (272)
218 3i8s_A Ferrous iron transport 97.9 1.7E-05 5.7E-10 80.9 7.1 138 416-605 4-157 (274)
219 2o52_A RAS-related protein RAB 97.9 2.8E-05 9.7E-10 74.4 8.4 149 415-607 25-178 (200)
220 3pqc_A Probable GTP-binding pr 97.9 5.2E-05 1.8E-09 71.0 10.0 23 416-438 24-46 (195)
221 2f7s_A C25KG, RAS-related prot 97.9 0.0001 3.5E-09 70.9 12.3 100 498-607 84-189 (217)
222 1g3q_A MIND ATPase, cell divis 97.9 8.6E-05 2.9E-09 72.7 11.9 162 416-596 3-194 (237)
223 1z08_A RAS-related protein RAB 97.9 1.1E-05 3.7E-10 74.0 5.1 148 415-606 6-158 (170)
224 4eun_A Thermoresistant glucoki 97.9 8.3E-06 2.8E-10 78.7 4.5 37 411-453 27-63 (200)
225 2a5j_A RAS-related protein RAB 97.9 2.6E-05 8.9E-10 73.7 7.8 150 415-608 21-175 (191)
226 3con_A GTPase NRAS; structural 97.9 3.7E-05 1.3E-09 72.2 8.8 149 415-607 21-173 (190)
227 2qtf_A Protein HFLX, GTP-bindi 97.9 4.8E-05 1.6E-09 81.0 10.6 23 417-439 181-203 (364)
228 1g16_A RAS-related protein SEC 97.9 1.8E-05 6.1E-10 72.4 6.3 99 499-607 53-155 (170)
229 2hjg_A GTP-binding protein ENG 97.8 1.1E-05 3.6E-10 87.8 5.5 118 417-577 5-124 (436)
230 2hf9_A Probable hydrogenase ni 97.8 1.8E-05 6.2E-10 76.9 6.5 166 415-607 38-214 (226)
231 3bc1_A RAS-related protein RAB 97.8 2.3E-05 7.8E-10 73.2 6.9 100 498-607 70-175 (195)
232 2hjg_A GTP-binding protein ENG 97.8 6.2E-05 2.1E-09 81.7 11.3 149 414-608 174-340 (436)
233 2x8a_A Nuclear valosin-contain 97.8 6.6E-06 2.2E-10 84.1 3.3 51 397-453 30-80 (274)
234 3t1o_A Gliding protein MGLA; G 97.8 4.6E-05 1.6E-09 71.4 8.9 160 415-607 14-182 (198)
235 1m2o_B GTP-binding protein SAR 97.8 1.4E-05 4.9E-10 75.9 5.4 33 402-437 13-45 (190)
236 3cph_A RAS-related protein SEC 97.8 2.5E-05 8.4E-10 74.7 7.1 101 498-608 69-173 (213)
237 2bme_A RAB4A, RAS-related prot 97.8 2.9E-05 9.9E-10 72.4 7.4 149 415-607 10-163 (186)
238 3bfv_A CAPA1, CAPB2, membrane 97.8 0.00015 5.1E-09 73.9 13.2 147 415-577 82-257 (271)
239 2ged_A SR-beta, signal recogni 97.8 2.1E-05 7.2E-10 74.1 6.4 24 415-438 48-71 (193)
240 1t9h_A YLOQ, probable GTPase E 97.8 3.5E-06 1.2E-10 87.9 0.9 42 410-453 170-214 (307)
241 3end_A Light-independent proto 97.8 6.6E-05 2.3E-09 77.1 10.5 167 415-597 41-242 (307)
242 3tw8_B RAS-related protein RAB 97.8 6.4E-06 2.2E-10 76.2 2.6 99 498-607 58-161 (181)
243 4dcu_A GTP-binding protein ENG 97.8 7.2E-05 2.5E-09 81.6 11.4 149 414-608 194-360 (456)
244 3k53_A Ferrous iron transport 97.8 1E-05 3.4E-10 82.0 4.2 142 416-606 4-155 (271)
245 2p5s_A RAS and EF-hand domain 97.8 4.3E-05 1.5E-09 72.8 8.4 149 414-606 27-186 (199)
246 1h65_A Chloroplast outer envel 97.8 7.9E-05 2.7E-09 75.3 10.7 150 375-577 14-167 (270)
247 3uie_A Adenylyl-sulfate kinase 97.8 5.9E-06 2E-10 79.7 2.2 49 402-453 14-64 (200)
248 1qhl_A Protein (cell division 97.8 7.8E-07 2.7E-11 88.9 -4.3 37 417-453 29-65 (227)
249 2gf0_A GTP-binding protein DI- 97.8 5.1E-05 1.8E-09 71.5 8.6 149 415-606 8-160 (199)
250 2hup_A RAS-related protein RAB 97.8 9.4E-05 3.2E-09 70.9 10.5 100 498-607 78-183 (201)
251 3kkq_A RAS-related protein M-R 97.8 7.3E-05 2.5E-09 69.6 9.5 99 500-607 68-172 (183)
252 2gf9_A RAS-related protein RAB 97.8 8.1E-06 2.8E-10 77.0 2.9 149 415-607 22-175 (189)
253 2afh_E Nitrogenase iron protei 97.8 0.00022 7.5E-09 72.5 13.8 172 416-596 3-208 (289)
254 1c1y_A RAS-related protein RAP 97.8 3.4E-05 1.2E-09 70.3 6.9 148 416-607 4-157 (167)
255 1nrj_B SR-beta, signal recogni 97.8 5.8E-05 2E-09 72.8 8.8 123 414-578 11-134 (218)
256 3cio_A ETK, tyrosine-protein k 97.8 6.9E-05 2.4E-09 77.4 9.9 147 415-577 104-279 (299)
257 3geh_A MNME, tRNA modification 97.8 5.7E-05 1.9E-09 83.0 9.6 143 416-607 225-374 (462)
258 1f6b_A SAR1; gtpases, N-termin 97.8 1E-05 3.5E-10 77.6 3.3 33 402-437 15-47 (198)
259 2bdt_A BH3686; alpha-beta prot 97.8 1.2E-05 4E-10 76.5 3.5 34 417-453 4-37 (189)
260 1wms_A RAB-9, RAB9, RAS-relate 97.7 6.2E-05 2.1E-09 69.5 8.3 103 498-607 56-164 (177)
261 3lxw_A GTPase IMAP family memb 97.7 0.00013 4.6E-09 72.9 11.3 147 414-599 20-183 (247)
262 2ew1_A RAS-related protein RAB 97.7 5E-05 1.7E-09 73.3 7.6 149 415-607 26-179 (201)
263 2atv_A RERG, RAS-like estrogen 97.7 4.4E-05 1.5E-09 72.5 7.0 148 415-607 28-181 (196)
264 4a1f_A DNAB helicase, replicat 97.7 0.00022 7.7E-09 75.1 13.0 41 410-452 43-83 (338)
265 1x3s_A RAS-related protein RAB 97.7 6.3E-05 2.2E-09 70.5 7.8 148 415-606 15-167 (195)
266 2il1_A RAB12; G-protein, GDP, 97.7 3.6E-05 1.2E-09 73.0 6.1 100 498-607 75-180 (192)
267 3ihw_A Centg3; RAS, centaurin, 97.7 0.00015 5.1E-09 68.5 10.4 143 414-607 19-170 (184)
268 3q9l_A Septum site-determining 97.7 0.00023 7.8E-09 70.5 12.2 168 416-596 3-208 (260)
269 1vg8_A RAS-related protein RAB 97.7 1.2E-05 4E-10 76.7 2.5 152 415-607 8-165 (207)
270 3q72_A GTP-binding protein RAD 97.7 4.3E-05 1.5E-09 69.8 6.2 99 499-607 50-154 (166)
271 3kta_A Chromosome segregation 97.7 2.5E-05 8.4E-10 73.7 4.6 38 404-444 18-55 (182)
272 3reg_A RHO-like small GTPase; 97.7 3.7E-05 1.3E-09 72.7 5.8 148 415-607 23-178 (194)
273 2qu8_A Putative nucleolar GTP- 97.7 8.4E-05 2.9E-09 72.6 8.5 148 415-608 29-196 (228)
274 4djt_A GTP-binding nuclear pro 97.7 8.8E-06 3E-10 78.6 1.4 100 498-607 61-165 (218)
275 2j41_A Guanylate kinase; GMP, 97.7 1.7E-05 5.8E-10 75.9 3.3 33 410-444 3-35 (207)
276 2fu5_C RAS-related protein RAB 97.7 5.5E-05 1.9E-09 70.5 6.7 100 498-607 57-161 (183)
277 1upt_A ARL1, ADP-ribosylation 97.7 0.0001 3.5E-09 67.4 8.4 115 415-578 7-122 (171)
278 1nrj_A Signal recognition part 97.7 5.7E-05 2E-09 68.8 6.3 77 1-77 1-93 (158)
279 3cbq_A GTP-binding protein REM 97.7 4.9E-05 1.7E-09 72.7 6.4 99 499-606 73-177 (195)
280 3gee_A MNME, tRNA modification 97.6 8.1E-05 2.8E-09 82.0 8.6 151 416-607 234-388 (476)
281 1kgd_A CASK, peripheral plasma 97.6 1.8E-05 6.2E-10 75.1 2.9 35 412-448 4-39 (180)
282 1mky_A Probable GTP-binding pr 97.6 0.0001 3.5E-09 80.1 9.1 142 417-607 3-156 (439)
283 3p26_A Elongation factor 1 alp 97.6 0.00024 8.2E-09 78.2 12.2 100 497-609 110-230 (483)
284 4bas_A ADP-ribosylation factor 97.6 4.2E-05 1.4E-09 72.2 5.3 23 415-437 17-39 (199)
285 2lkc_A Translation initiation 97.6 1.5E-05 5.1E-10 73.8 2.1 23 415-437 8-30 (178)
286 2cxx_A Probable GTP-binding pr 97.6 0.00015 5.2E-09 67.6 9.1 21 417-437 3-23 (190)
287 1mh1_A RAC1; GTP-binding, GTPa 97.6 3.6E-05 1.2E-09 71.5 4.6 99 499-607 54-170 (186)
288 2fv8_A H6, RHO-related GTP-bin 97.6 4.5E-05 1.5E-09 73.2 5.3 23 415-437 25-47 (207)
289 1wf3_A GTP-binding protein; GT 97.6 0.00012 4.1E-09 75.7 8.7 118 417-577 9-130 (301)
290 3t5g_A GTP-binding protein RHE 97.6 1.7E-05 5.9E-10 73.8 2.0 99 498-606 54-158 (181)
291 2yc2_C IFT27, small RAB-relate 97.6 7.1E-05 2.4E-09 70.9 6.3 101 498-608 73-183 (208)
292 3bwd_D RAC-like GTP-binding pr 97.6 4.4E-05 1.5E-09 70.8 4.7 146 415-606 8-170 (182)
293 3cwq_A Para family chromosome 97.6 0.00039 1.3E-08 67.7 11.4 147 417-596 2-153 (209)
294 3k9g_A PF-32 protein; ssgcid, 97.6 0.00029 9.9E-09 70.6 10.7 39 415-454 27-66 (267)
295 3hr8_A Protein RECA; alpha and 97.6 0.00042 1.4E-08 73.6 12.4 40 410-451 58-97 (356)
296 1fzq_A ADP-ribosylation factor 97.6 0.00011 3.8E-09 69.0 7.1 23 415-437 16-38 (181)
297 2h57_A ADP-ribosylation factor 97.6 4.5E-05 1.6E-09 71.9 4.3 24 415-438 21-44 (190)
298 3cpj_B GTP-binding protein YPT 97.6 9E-05 3.1E-09 72.1 6.6 148 415-606 13-165 (223)
299 1ixz_A ATP-dependent metallopr 97.6 2.5E-05 8.5E-10 77.9 2.6 48 400-453 38-85 (254)
300 1jwy_B Dynamin A GTPase domain 97.6 0.00012 4E-09 75.1 7.7 22 417-438 26-47 (315)
301 2iwr_A Centaurin gamma 1; ANK 97.5 0.00012 4.1E-09 67.8 7.1 145 415-607 7-159 (178)
302 3kjh_A CO dehydrogenase/acetyl 97.5 0.0002 6.8E-09 70.1 9.0 37 417-453 2-38 (254)
303 4gzl_A RAS-related C3 botulinu 97.5 7.8E-05 2.7E-09 71.6 5.9 24 414-437 29-52 (204)
304 2vp4_A Deoxynucleoside kinase; 97.5 2.9E-05 9.8E-10 76.8 2.9 38 410-453 17-54 (230)
305 2oze_A ORF delta'; para, walke 97.5 0.00011 3.9E-09 74.8 7.4 166 417-593 36-242 (298)
306 2j1l_A RHO-related GTP-binding 97.5 7.8E-05 2.7E-09 72.2 5.8 23 415-437 34-56 (214)
307 1wcv_1 SOJ, segregation protei 97.5 0.00013 4.6E-09 72.9 7.8 167 416-595 7-201 (257)
308 1byi_A Dethiobiotin synthase; 97.5 0.00067 2.3E-08 65.8 12.6 34 416-449 2-36 (224)
309 1iy2_A ATP-dependent metallopr 97.5 2.8E-05 9.4E-10 78.9 2.6 47 401-453 63-109 (278)
310 3t5d_A Septin-7; GTP-binding p 97.5 0.00023 7.7E-09 72.2 9.2 25 413-437 6-30 (274)
311 2ph1_A Nucleotide-binding prot 97.5 0.00049 1.7E-08 69.1 11.5 167 417-596 20-223 (262)
312 2h5e_A Peptide chain release f 97.5 0.00019 6.5E-09 80.1 9.3 86 497-596 81-167 (529)
313 2xtp_A GTPase IMAP family memb 97.5 0.00014 4.8E-09 72.6 7.4 23 415-437 22-44 (260)
314 3oes_A GTPase rhebl1; small GT 97.5 1.5E-05 5.1E-10 76.2 0.2 147 415-606 24-176 (201)
315 3bh0_A DNAB-like replicative h 97.5 0.0012 3.9E-08 68.6 14.5 51 400-452 55-105 (315)
316 3sjy_A Translation initiation 97.5 0.00016 5.5E-09 77.6 7.9 96 498-606 75-181 (403)
317 2gj8_A MNME, tRNA modification 97.5 9.5E-05 3.3E-09 69.1 5.2 23 416-438 5-27 (172)
318 2zej_A Dardarin, leucine-rich 97.5 9.9E-05 3.4E-09 69.5 5.2 24 416-439 3-26 (184)
319 1knq_A Gluconate kinase; ALFA/ 97.5 8.5E-05 2.9E-09 69.5 4.7 36 412-453 7-42 (175)
320 2fh5_B SR-beta, signal recogni 97.4 0.00013 4.5E-09 70.0 6.1 119 415-578 7-129 (214)
321 1in4_A RUVB, holliday junction 97.4 1.4E-05 4.7E-10 83.7 -1.0 37 416-452 52-92 (334)
322 2ygr_A Uvrabc system protein A 97.4 0.0003 1E-08 83.3 10.1 65 498-573 515-581 (993)
323 3tau_A Guanylate kinase, GMP k 97.4 6.1E-05 2.1E-09 73.2 3.5 28 412-441 7-34 (208)
324 2gco_A H9, RHO-related GTP-bin 97.4 9.4E-05 3.2E-09 70.7 4.6 23 415-437 25-47 (201)
325 2q3h_A RAS homolog gene family 97.4 0.00016 5.4E-09 68.6 6.2 23 415-437 20-42 (201)
326 3j2k_7 ERF3, eukaryotic polype 97.4 0.00034 1.2E-08 76.1 9.5 100 497-609 94-217 (439)
327 3nwj_A ATSK2; P loop, shikimat 97.4 3.9E-05 1.3E-09 77.5 1.9 40 399-440 31-73 (250)
328 3q3j_B RHO-related GTP-binding 97.4 0.00015 5E-09 70.4 6.0 146 416-606 28-192 (214)
329 1r8s_A ADP-ribosylation factor 97.4 0.00044 1.5E-08 62.8 8.8 112 417-577 2-114 (164)
330 3c5c_A RAS-like protein 12; GD 97.4 0.00018 6.2E-09 67.9 6.4 149 415-606 21-175 (187)
331 3kta_B Chromosome segregation 97.4 0.00027 9.2E-09 67.5 7.6 66 500-573 60-125 (173)
332 2g3y_A GTP-binding protein GEM 97.4 0.00044 1.5E-08 67.6 9.2 22 416-437 38-59 (211)
333 1zd9_A ADP-ribosylation factor 97.4 0.00022 7.6E-09 67.1 6.9 115 415-577 22-137 (188)
334 1zj6_A ADP-ribosylation factor 97.4 0.0003 1E-08 65.9 7.7 114 415-577 16-130 (187)
335 2ius_A DNA translocase FTSK; n 97.4 0.00028 9.7E-09 78.3 8.7 47 406-454 160-208 (512)
336 2atx_A Small GTP binding prote 97.4 0.00012 4E-09 69.1 4.9 147 415-607 18-183 (194)
337 1xzp_A Probable tRNA modificat 97.4 6.2E-05 2.1E-09 83.1 3.3 141 416-608 244-396 (482)
338 1svm_A Large T antigen; AAA+ f 97.4 7E-05 2.4E-09 80.2 3.6 43 401-448 157-199 (377)
339 3t61_A Gluconokinase; PSI-biol 97.4 0.0002 6.7E-09 68.8 6.4 25 415-439 18-42 (202)
340 2r6f_A Excinuclease ABC subuni 97.4 0.00029 9.8E-09 83.3 8.9 65 498-573 498-564 (972)
341 3gj0_A GTP-binding nuclear pro 97.4 5.2E-05 1.8E-09 73.4 2.2 99 498-607 64-165 (221)
342 4e22_A Cytidylate kinase; P-lo 97.4 2.3E-05 7.8E-10 78.8 -0.4 35 411-447 25-62 (252)
343 1wb1_A Translation elongation 97.4 0.00049 1.7E-08 75.8 10.2 97 497-607 72-179 (482)
344 2yvu_A Probable adenylyl-sulfa 97.4 9.8E-05 3.4E-09 69.9 4.0 39 416-454 14-52 (186)
345 2j0v_A RAC-like GTP-binding pr 97.3 8.4E-05 2.9E-09 71.3 3.3 98 498-606 57-169 (212)
346 1lnz_A SPO0B-associated GTP-bi 97.3 0.00025 8.4E-09 74.9 7.1 106 498-607 206-320 (342)
347 3def_A T7I23.11 protein; chlor 97.3 0.00018 6.1E-09 72.4 5.7 125 415-577 36-164 (262)
348 4ad8_A DNA repair protein RECN 97.3 0.00033 1.1E-08 77.6 8.3 92 500-614 392-490 (517)
349 3th5_A RAS-related C3 botulinu 96.4 3.2E-05 1.1E-09 73.9 0.0 24 414-437 29-52 (204)
350 3cr8_A Sulfate adenylyltranfer 97.3 8.5E-05 2.9E-09 83.3 3.2 42 410-453 366-408 (552)
351 1zun_B Sulfate adenylate trans 97.3 0.0014 4.7E-08 71.0 12.6 97 498-607 104-214 (434)
352 3ney_A 55 kDa erythrocyte memb 97.3 0.00013 4.4E-09 71.2 3.8 27 412-440 18-44 (197)
353 2r8r_A Sensor protein; KDPD, P 97.3 0.00032 1.1E-08 69.9 6.6 41 412-453 4-44 (228)
354 2vf7_A UVRA2, excinuclease ABC 97.3 0.0004 1.4E-08 81.4 8.2 64 499-573 374-439 (842)
355 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00043 1.5E-08 64.8 7.0 24 415-438 7-30 (184)
356 4eaq_A DTMP kinase, thymidylat 97.2 0.00019 6.5E-09 71.2 4.6 44 403-449 13-59 (229)
357 3o47_A ADP-ribosylation factor 97.2 0.00023 8E-09 74.3 5.5 117 414-578 164-280 (329)
358 3zq6_A Putative arsenical pump 97.2 0.0031 1.1E-07 65.6 13.8 38 416-453 15-52 (324)
359 2aka_B Dynamin-1; fusion prote 97.2 0.00083 2.8E-08 68.0 9.1 23 416-438 27-49 (299)
360 2x2e_A Dynamin-1; nitration, h 97.2 0.00054 1.8E-08 72.1 8.0 22 417-438 33-54 (353)
361 2h17_A ADP-ribosylation factor 97.2 0.00059 2E-08 63.7 7.3 114 415-577 21-135 (181)
362 2xau_A PRE-mRNA-splicing facto 97.2 0.00013 4.3E-09 85.1 3.1 116 412-547 108-228 (773)
363 2cjw_A GTP-binding protein GEM 97.2 0.00018 6.3E-09 68.5 3.6 23 416-438 7-29 (192)
364 4dkx_A RAS-related protein RAB 97.2 0.00096 3.3E-08 65.5 8.8 98 499-606 63-165 (216)
365 3m6a_A ATP-dependent protease 97.2 0.0002 6.7E-09 80.1 4.3 46 402-450 98-143 (543)
366 1d2e_A Elongation factor TU (E 97.2 0.0012 4.2E-08 70.6 10.3 149 416-599 4-165 (397)
367 2ce7_A Cell division protein F 97.2 0.00075 2.6E-08 74.3 8.8 34 402-439 40-73 (476)
368 3iqw_A Tail-anchored protein t 97.2 0.0035 1.2E-07 65.8 13.4 39 415-453 16-54 (334)
369 1gvn_B Zeta; postsegregational 97.1 0.00047 1.6E-08 70.7 6.5 61 380-455 10-70 (287)
370 1gwn_A RHO-related GTP-binding 97.1 0.00059 2E-08 65.8 6.9 24 415-438 28-51 (205)
371 1kag_A SKI, shikimate kinase I 97.1 0.00019 6.4E-09 66.7 3.2 24 417-440 6-29 (173)
372 1xjc_A MOBB protein homolog; s 97.1 0.00034 1.1E-08 66.7 4.8 37 416-452 5-41 (169)
373 3r7w_A Gtpase1, GTP-binding pr 97.1 0.0011 3.8E-08 68.4 9.2 137 416-593 4-153 (307)
374 3dpu_A RAB family protein; roc 97.1 0.00055 1.9E-08 76.1 7.3 98 497-608 97-199 (535)
375 2q6t_A DNAB replication FORK h 97.1 0.0029 9.9E-08 68.7 12.6 51 401-453 188-239 (444)
376 1moz_A ARL1, ADP-ribosylation 97.1 0.00022 7.5E-09 66.2 3.2 115 414-577 17-132 (183)
377 1ksh_A ARF-like protein 2; sma 97.1 0.00034 1.1E-08 65.3 4.4 23 415-437 18-40 (186)
378 2p5t_B PEZT; postsegregational 97.1 0.0011 3.8E-08 66.2 8.5 39 414-455 31-69 (253)
379 2z43_A DNA repair and recombin 97.1 0.0011 3.7E-08 69.0 8.6 42 409-452 103-150 (324)
380 3l0i_B RAS-related protein RAB 97.1 6.6E-06 2.3E-10 78.5 -7.7 92 498-599 82-176 (199)
381 2b6h_A ADP-ribosylation factor 97.1 0.0021 7.3E-08 60.8 9.9 23 414-436 28-50 (192)
382 1np6_A Molybdopterin-guanine d 97.1 0.0004 1.4E-08 66.3 4.7 36 417-452 8-43 (174)
383 2pez_A Bifunctional 3'-phospho 97.1 0.00031 1.1E-08 66.0 3.9 37 412-450 4-41 (179)
384 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.00031 1.1E-08 75.5 4.3 38 411-450 18-67 (392)
385 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00076 2.6E-08 67.8 6.9 41 415-455 4-44 (260)
386 3ez9_A Para; DNA binding, wing 97.0 0.00086 2.9E-08 71.7 7.6 41 414-454 110-157 (403)
387 2c78_A Elongation factor TU-A; 97.0 0.0016 5.4E-08 69.8 9.7 155 416-603 12-180 (405)
388 1fnn_A CDC6P, cell division co 97.0 0.003 1E-07 65.8 11.6 34 417-450 46-80 (389)
389 4afi_A AP-3 complex subunit de 97.0 0.0071 2.4E-07 57.7 13.0 103 4-120 57-166 (173)
390 3lvq_E ARF-GAP with SH3 domain 97.0 0.00066 2.2E-08 74.5 6.5 142 415-607 322-474 (497)
391 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00034 1.2E-08 64.7 3.6 24 416-439 24-47 (149)
392 2qpt_A EH domain-containing pr 97.0 0.0013 4.4E-08 73.7 8.9 24 415-438 65-88 (550)
393 1v5w_A DMC1, meiotic recombina 97.0 0.0019 6.4E-08 67.9 9.5 94 347-451 64-164 (343)
394 3ez2_A Plasmid partition prote 97.0 0.0021 7.3E-08 68.4 10.1 41 414-454 107-154 (398)
395 3qq5_A Small GTP-binding prote 97.0 0.00031 1E-08 76.3 3.2 94 499-607 84-186 (423)
396 1dar_A EF-G, elongation factor 97.0 0.0026 8.8E-08 73.2 11.0 76 497-586 76-151 (691)
397 2xex_A Elongation factor G; GT 97.0 0.0018 6E-08 74.6 9.6 71 497-581 74-144 (693)
398 1cke_A CK, MSSA, protein (cyti 96.9 0.0002 6.9E-09 69.5 1.3 31 417-447 7-40 (227)
399 2wkq_A NPH1-1, RAS-related C3 96.9 0.00066 2.3E-08 69.4 5.3 99 499-607 204-320 (332)
400 1jjv_A Dephospho-COA kinase; P 96.9 0.0003 1E-08 67.6 2.3 22 416-437 3-24 (206)
401 1m7g_A Adenylylsulfate kinase; 96.9 0.0005 1.7E-08 66.6 3.8 36 412-449 24-61 (211)
402 2qt1_A Nicotinamide riboside k 96.9 0.00051 1.7E-08 66.1 3.9 29 410-440 18-46 (207)
403 2i1q_A DNA repair and recombin 96.9 0.0033 1.1E-07 64.9 10.3 80 348-438 41-121 (322)
404 3tr5_A RF-3, peptide chain rel 96.9 0.0029 9.9E-08 70.5 10.3 86 497-596 81-167 (528)
405 2j69_A Bacterial dynamin-like 96.9 0.004 1.4E-07 71.6 11.8 68 498-578 174-244 (695)
406 3llu_A RAS-related GTP-binding 96.9 0.00069 2.4E-08 64.3 4.5 121 415-577 20-142 (196)
407 3zvr_A Dynamin-1; hydrolase, D 96.9 0.0024 8.3E-08 74.0 9.7 101 499-608 151-269 (772)
408 2xj4_A MIPZ; replication, cell 96.9 0.0016 5.6E-08 66.2 7.4 38 416-453 5-43 (286)
409 1jny_A EF-1-alpha, elongation 96.8 0.0043 1.5E-07 67.2 11.1 98 497-607 83-203 (435)
410 1u94_A RECA protein, recombina 96.8 0.0044 1.5E-07 65.7 10.8 41 410-452 60-100 (356)
411 1w1w_A Structural maintenance 96.8 0.00054 1.8E-08 74.0 3.8 63 504-573 333-395 (430)
412 2elf_A Protein translation elo 96.8 0.0023 7.8E-08 68.1 8.5 102 417-576 23-125 (370)
413 2x77_A ADP-ribosylation factor 96.8 0.00031 1E-08 65.9 1.4 71 498-578 66-137 (189)
414 3ug7_A Arsenical pump-driving 96.8 0.013 4.3E-07 61.7 14.0 38 416-453 27-64 (349)
415 1ukz_A Uridylate kinase; trans 96.8 0.0016 5.6E-08 62.1 6.6 28 412-439 12-39 (203)
416 2qag_A Septin-2, protein NEDD5 96.8 0.0017 5.8E-08 68.8 7.1 24 416-439 38-61 (361)
417 2rdo_7 EF-G, elongation factor 96.8 0.0054 1.9E-07 70.6 11.8 75 497-585 81-155 (704)
418 1g7s_A Translation initiation 96.8 0.0012 4.2E-08 74.5 6.3 65 499-577 71-135 (594)
419 1xp8_A RECA protein, recombina 96.8 0.0074 2.5E-07 64.1 12.0 42 410-453 71-112 (366)
420 1ihu_A Arsenical pump-driving 96.8 0.0074 2.5E-07 67.7 12.4 39 415-453 8-46 (589)
421 3pg5_A Uncharacterized protein 96.7 0.0021 7E-08 68.0 7.3 38 417-454 3-41 (361)
422 3bgw_A DNAB-like replicative h 96.7 0.0068 2.3E-07 66.0 11.5 50 402-453 186-235 (444)
423 1gtv_A TMK, thymidylate kinase 96.7 0.00053 1.8E-08 65.8 2.4 34 417-450 2-35 (214)
424 4fcw_A Chaperone protein CLPB; 96.7 0.0033 1.1E-07 63.8 8.3 37 417-453 49-85 (311)
425 3k1j_A LON protease, ATP-depen 96.7 0.00051 1.8E-08 77.6 2.4 49 401-451 48-97 (604)
426 3izy_P Translation initiation 96.7 0.00018 6.2E-09 80.3 -1.3 114 415-577 4-117 (537)
427 2zts_A Putative uncharacterize 96.7 0.008 2.7E-07 58.5 10.7 42 410-453 27-69 (251)
428 1sxj_C Activator 1 40 kDa subu 96.7 0.00031 1.1E-08 73.2 0.4 42 404-445 35-76 (340)
429 1kk1_A EIF2gamma; initiation o 96.7 0.0022 7.6E-08 68.8 6.9 96 498-606 83-189 (410)
430 3qks_A DNA double-strand break 96.6 0.00095 3.2E-08 64.8 3.6 25 416-440 24-48 (203)
431 2ywe_A GTP-binding protein LEP 96.6 0.0047 1.6E-07 69.9 9.6 95 498-606 73-173 (600)
432 3mca_A HBS1, elongation factor 96.6 0.00063 2.2E-08 76.9 2.4 25 415-439 177-201 (592)
433 3cb4_D GTP-binding protein LEP 96.6 0.0032 1.1E-07 71.2 8.2 95 498-606 71-171 (599)
434 3fkq_A NTRC-like two-domain pr 96.6 0.0071 2.4E-07 64.0 10.4 41 413-453 141-182 (373)
435 1f60_A Elongation factor EEF1A 96.6 0.0032 1.1E-07 68.8 7.8 101 497-608 84-203 (458)
436 2dhr_A FTSH; AAA+ protein, hex 96.6 0.0014 4.9E-08 72.5 4.9 47 401-453 54-100 (499)
437 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4E-08 63.2 3.5 21 417-437 3-23 (204)
438 3io3_A DEHA2D07832P; chaperone 96.5 0.0093 3.2E-07 62.9 10.7 38 416-453 19-58 (348)
439 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.8E-08 63.8 3.2 27 412-440 11-37 (204)
440 4a9a_A Ribosome-interacting GT 96.5 0.0015 5.2E-08 69.8 4.4 31 407-437 64-94 (376)
441 1zo1_I IF2, translation initia 96.5 0.00036 1.2E-08 77.3 -0.5 143 415-607 4-157 (501)
442 2w58_A DNAI, primosome compone 96.5 0.002 6.9E-08 61.4 4.5 35 416-450 55-89 (202)
443 1y63_A LMAJ004144AAA protein; 96.4 0.0016 5.5E-08 61.7 3.7 32 405-438 2-33 (184)
444 3io5_A Recombination and repai 96.4 0.0073 2.5E-07 63.2 8.9 35 417-451 30-66 (333)
445 2z4s_A Chromosomal replication 96.4 0.012 4E-07 64.0 10.9 27 416-442 131-157 (440)
446 1s0u_A EIF-2-gamma, translatio 96.4 0.0054 1.9E-07 65.7 8.1 96 498-606 81-187 (408)
447 2woj_A ATPase GET3; tail-ancho 96.4 0.021 7.1E-07 60.3 12.4 38 416-453 19-58 (354)
448 3of5_A Dethiobiotin synthetase 96.4 0.026 8.8E-07 55.8 12.4 33 417-449 6-39 (228)
449 1nks_A Adenylate kinase; therm 96.4 0.0027 9.2E-08 59.4 4.6 33 417-449 3-35 (194)
450 3cmw_A Protein RECA, recombina 96.4 0.054 1.9E-06 67.7 17.4 42 410-453 729-770 (1706)
451 1ly1_A Polynucleotide kinase; 96.3 0.0019 6.5E-08 59.8 3.5 37 415-455 2-38 (181)
452 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0018 6.2E-08 68.6 3.3 36 405-440 14-49 (359)
453 3kb2_A SPBC2 prophage-derived 96.3 0.0023 7.7E-08 58.9 3.6 24 417-440 3-26 (173)
454 3avx_A Elongation factor TS, e 96.3 0.0099 3.4E-07 71.6 9.9 150 415-599 296-458 (1289)
455 1kht_A Adenylate kinase; phosp 96.3 0.0025 8.7E-08 59.6 3.8 28 416-443 4-31 (192)
456 3auy_A DNA double-strand break 96.2 0.0078 2.7E-07 63.7 8.1 61 502-574 278-345 (371)
457 1r5b_A Eukaryotic peptide chai 96.2 0.0058 2E-07 66.9 7.1 23 415-437 43-65 (467)
458 1q57_A DNA primase/helicase; d 96.2 0.032 1.1E-06 61.3 13.1 51 401-453 230-281 (503)
459 3bos_A Putative DNA replicatio 96.2 0.0036 1.2E-07 60.3 4.8 37 417-453 54-90 (242)
460 2rhm_A Putative kinase; P-loop 96.2 0.003 1E-07 59.3 4.1 25 415-439 5-29 (193)
461 3cm0_A Adenylate kinase; ATP-b 96.2 0.0028 9.6E-08 59.4 3.7 24 416-439 5-28 (186)
462 1w1w_A Structural maintenance 96.2 0.009 3.1E-07 64.4 8.2 12 496-507 354-365 (430)
463 1uf9_A TT1252 protein; P-loop, 96.2 0.0022 7.5E-08 60.8 3.0 26 413-438 6-31 (203)
464 2b8t_A Thymidine kinase; deoxy 96.1 0.0088 3E-07 59.3 6.9 36 412-449 11-46 (223)
465 3umf_A Adenylate kinase; rossm 96.1 0.0032 1.1E-07 62.2 3.6 38 414-455 28-65 (217)
466 3cmu_A Protein RECA, recombina 96.0 0.013 4.6E-07 74.0 9.9 41 410-452 1424-1464(2050)
467 1tev_A UMP-CMP kinase; ploop, 96.0 0.0039 1.3E-07 58.4 3.9 25 415-439 3-27 (196)
468 3vqt_A RF-3, peptide chain rel 96.0 0.009 3.1E-07 66.8 7.5 85 497-595 99-184 (548)
469 1qhx_A CPT, protein (chloramph 96.0 0.0034 1.2E-07 58.3 3.4 25 416-440 4-28 (178)
470 2plr_A DTMP kinase, probable t 96.0 0.0052 1.8E-07 58.4 4.7 30 416-446 5-34 (213)
471 2z0h_A DTMP kinase, thymidylat 96.0 0.0055 1.9E-07 57.7 4.8 31 417-447 2-32 (197)
472 2jaq_A Deoxyguanosine kinase; 96.0 0.0039 1.3E-07 59.0 3.7 24 417-440 2-25 (205)
473 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0047 1.6E-07 65.6 4.5 34 417-450 37-70 (392)
474 1nn5_A Similar to deoxythymidy 95.9 0.006 2.1E-07 58.3 4.8 31 416-446 10-40 (215)
475 2vhj_A Ntpase P4, P4; non- hyd 95.9 0.012 4.1E-07 61.6 7.3 26 411-438 121-146 (331)
476 3igf_A ALL4481 protein; two-do 95.9 0.013 4.4E-07 62.6 7.6 36 416-451 3-38 (374)
477 4ad8_A DNA repair protein RECN 95.9 0.0018 6E-08 71.8 0.9 36 400-438 48-83 (517)
478 2c95_A Adenylate kinase 1; tra 95.9 0.0048 1.6E-07 58.0 3.9 24 416-439 10-33 (196)
479 1uj2_A Uridine-cytidine kinase 95.9 0.0061 2.1E-07 60.7 4.7 42 412-453 19-65 (252)
480 2bwj_A Adenylate kinase 5; pho 95.8 0.0051 1.7E-07 58.0 3.9 24 416-439 13-36 (199)
481 1sky_E F1-ATPase, F1-ATP synth 95.8 0.028 9.4E-07 61.7 10.1 32 411-444 149-180 (473)
482 2orw_A Thymidine kinase; TMTK, 95.8 0.0089 3E-07 57.1 5.5 162 413-605 3-170 (184)
483 1qf9_A UMP/CMP kinase, protein 95.8 0.0056 1.9E-07 57.1 4.1 25 415-439 6-30 (194)
484 3lw7_A Adenylate kinase relate 95.8 0.0043 1.5E-07 56.6 3.1 19 417-435 3-21 (179)
485 2wwf_A Thymidilate kinase, put 95.8 0.0074 2.5E-07 57.6 4.8 31 416-446 11-41 (212)
486 3llm_A ATP-dependent RNA helic 95.8 0.012 4E-07 57.9 6.3 24 412-437 75-98 (235)
487 1vht_A Dephospho-COA kinase; s 95.8 0.0052 1.8E-07 59.4 3.7 23 415-437 4-26 (218)
488 3trf_A Shikimate kinase, SK; a 95.8 0.0055 1.9E-07 57.4 3.7 23 417-439 7-29 (185)
489 3ice_A Transcription terminati 95.8 0.0042 1.5E-07 66.6 3.2 36 405-442 166-201 (422)
490 1a7j_A Phosphoribulokinase; tr 95.8 0.0036 1.2E-07 64.3 2.6 40 415-454 5-44 (290)
491 2ze6_A Isopentenyl transferase 95.7 0.0055 1.9E-07 61.4 3.8 23 417-439 3-25 (253)
492 3auy_A DNA double-strand break 95.7 0.0051 1.7E-07 65.1 3.5 22 416-437 26-47 (371)
493 3r20_A Cytidylate kinase; stru 95.7 0.0061 2.1E-07 60.9 3.7 25 415-439 9-33 (233)
494 2qby_A CDC6 homolog 1, cell di 95.7 0.0077 2.6E-07 62.3 4.7 28 415-442 45-72 (386)
495 1via_A Shikimate kinase; struc 95.6 0.0054 1.8E-07 57.2 3.1 23 417-439 6-28 (175)
496 1q3t_A Cytidylate kinase; nucl 95.6 0.0072 2.5E-07 59.4 4.1 25 415-439 16-40 (236)
497 3j25_A Tetracycline resistance 95.6 0.013 4.3E-07 66.8 6.6 144 417-598 4-154 (638)
498 2pbr_A DTMP kinase, thymidylat 95.6 0.0087 3E-07 56.0 4.4 30 417-446 2-31 (195)
499 1jbk_A CLPB protein; beta barr 95.6 0.011 3.9E-07 54.2 5.1 26 416-441 44-69 (195)
500 2v54_A DTMP kinase, thymidylat 95.6 0.0059 2E-07 57.9 3.2 24 416-439 5-28 (204)
No 1
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=100.00 E-value=3.4e-43 Score=338.38 Aligned_cols=143 Identities=32% Similarity=0.525 Sum_probs=103.7
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHHhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007024 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (621)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~~~~~l~w~~~n~~~lvfv~vyq~~l~ 80 (621)
|.|+|+|||||||||||++ ++++++++|||+||++||||||+++++|.+| +|+|||+|+||||||||||||+|||
T Consensus 10 ~~D~~~IfTkGGvVLWs~~-~~~~~~~~~IN~LIr~VlLEER~~~~~y~~d----~ytlkW~l~NEl~LVFVvVYQ~iL~ 84 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQ-GVSDSCTGPVNALIRSVLLQERGGNNSFTHE----ALTLKYKLDNQFELVFVVGFQKILT 84 (185)
T ss_dssp SCSEEEEEETTSBEEEEEB-TTTBSCCCHHHHHHHHTGGGC-------CCC----CCEEEEEEETTTTEEEEEEESCGGG
T ss_pred ceeEEEEEeCCeEEEEeec-CCcccccchHHHHHHHhhhccccCCCceeEc----CeEEEEEEeccCCEEEEEEEccccc
Confidence 8999999999999999953 4456899999999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcCC---------CccchHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCcCCC
Q 007024 81 LLYVDDLLAMMKQSFSEIYDPKRT---------DYSDFDEMFRQLRKEAEARAEELKKSKQVTKPMNNLKKQGGQLQKGG 151 (621)
Q Consensus 81 l~y~d~ll~~~~~~f~~~y~~~~~---------~~~~f~~~f~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (621)
|+|||+||++|++.|+++|++.+. .+.+||++|+++|+++|..++.++ ++.|+ +|++++++++...+
T Consensus 85 L~YiD~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~-~k~mr---~fees~ks~k~~~~ 160 (185)
T 2fh5_A 85 LTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRA-PTTMK---KFEDSEKAKKPVRS 160 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC--------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhh-HHhhc---cHhhhhhhhhhhhh
Confidence 999999999999999999977632 233799999999999998876544 55564 68888887764334
Q ss_pred C
Q 007024 152 F 152 (621)
Q Consensus 152 ~ 152 (621)
+
T Consensus 161 ~ 161 (185)
T 2fh5_A 161 M 161 (185)
T ss_dssp -
T ss_pred h
Confidence 3
No 2
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=100.00 E-value=7.5e-40 Score=345.84 Aligned_cols=282 Identities=43% Similarity=0.679 Sum_probs=246.6
Q ss_pred ccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccc
Q 007024 325 AGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILR 404 (621)
Q Consensus 325 ~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~ 404 (621)
.+...++++++++.+++++++|+++||+.+++.+|++.|++.+.++++..+.++...+..++.+.|.+++.+....+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 121 (328)
T 3e70_C 42 ILTVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIE 121 (328)
T ss_dssp CCEEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 35678999999999999999999999999999999999999999888777777778899999999999998765333211
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHH
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ 484 (621)
......+|+ +++|+||||||||||+++|++++.+++|+|.+.++|+||.++.+|++.+++.++++++...++.++..
T Consensus 122 -~~~~~~~g~--vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 122 -EIRKAEKPY--VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp -HHHSSCSSE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred -hcccCCCCe--EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 111223444 99999999999999999999999999999999999999999999999999999999888788888888
Q ss_pred HHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 485 VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 485 ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
.+.+.+......+++++++||+|+.+++..++.+|..+.+...|+..++|.+++++.|...+++.|++. .
T Consensus 199 ~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~----------~ 268 (328)
T 3e70_C 199 VAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEA----------V 268 (328)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHH----------S
T ss_pred HHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHh----------c
Confidence 888888777777889999999999988888889998887777899988888899999988887666543 3
Q ss_pred CceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 565 LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 565 ~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+++++|+||+|++ .++|.++++++.+++||.|+|+||.|+||+.|+|++++++||
T Consensus 269 ~it~iilTKlD~~-a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~ll 323 (328)
T 3e70_C 269 KIDGIILTKLDAD-ARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERIF 323 (328)
T ss_dssp CCCEEEEECGGGC-SCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred CCCEEEEeCcCCc-cchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHHh
Confidence 7899999999997 799999999999999999999999999999999999999997
No 3
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-38 Score=344.83 Aligned_cols=287 Identities=26% Similarity=0.447 Sum_probs=256.8
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
..|++.|+++.|...|+++++++.+++|+++|++++|+.+++..+++.+++.+.+..+....+....+..++.++|.+++
T Consensus 8 ~~l~~~~~~l~~~~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~L 87 (443)
T 3dm5_A 8 KALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKFL 87 (443)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999988777665544566778889999999999
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
.+... . +.+ .+.|++++|+|++||||||++++||.++...+.+|.++++|+||.++++|++.+++..+++++
T Consensus 88 ~~~~~-~----~~~---~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 88 GTEAK-P----IEI---KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp TSSCC-C----CCC---CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred cCccc-c----ccc---CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 76321 1 111 235789999999999999999999999998899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
......++..++.++++.+...++|++++||+|+.+....++.+|.++.....|+.++||.+++.|.++..++..|++.
T Consensus 160 ~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~- 238 (443)
T 3dm5_A 160 GNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEA- 238 (443)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHS-
T ss_pred ecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhh-
Confidence 8777888999988999888888899999999999998889999999888888999999999999999998887666543
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
..++++|+||+|+. .+.|.++++.+.+++||.|+|+||+++||+.|+|++++++||
T Consensus 239 ---------~~i~gVIlTKlD~~-~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~ll 294 (443)
T 3dm5_A 239 ---------TPIGSIIVTKLDGS-AKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLL 294 (443)
T ss_dssp ---------CTTEEEEEECCSSC-SSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred ---------CCCeEEEEECCCCc-ccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHc
Confidence 37899999999997 799999999999999999999999999999999999999997
No 4
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-38 Score=335.84 Aligned_cols=262 Identities=30% Similarity=0.485 Sum_probs=222.7
Q ss_pred cchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccccc
Q 007024 333 ADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQ 412 (621)
Q Consensus 333 ~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~ 412 (621)
.++++.+++++++|+++||+.+++.+|++.+++...+..+.. ...++.++.+.|.+++.+... ...++|.+.+
T Consensus 84 ~~~~~~~~~l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~---~~~l~l~~~~ 156 (359)
T 2og2_A 84 AETDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS---KTELQLGFRK 156 (359)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCCC------CSCCCCSSS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---CCCcceecCC
Confidence 457899999999999999999999999999999988776533 456888899999999976532 1356787778
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC-CCHHHHHHHHHH
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDPAIVAKEAIQ 491 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~-~d~~~ia~~al~ 491 (621)
|+ +++|+||||||||||+++|||++.+++|+|.+.++|+||.++++|+..++++.+++++..... .++...+.+.+.
T Consensus 157 g~--vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 157 PA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred Ce--EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 87 999999999999999999999999999999999999999999999999988888887766555 677777778777
Q ss_pred HHhhcCCCccccccchhHH-----------hHHHHHHHHHhhhhcCCCc--EEEEEeCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 492 EATRNGSDVVLVDTAGRMQ-----------DNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 492 ~~~~~~~d~vliDtSGg~q-----------qr~~LaraL~~l~~~~~Pd--lILLVDEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
++...+++.+++|++|+.+ +++.++++|. .+|+ ++++ | ||+|+|+..+...|++.
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~-----~~P~e~lLvL-D-pttglD~~~~~~~~~~~----- 302 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-----GAPNEILLVL-D-GNTGLNMLPQAREFNEV----- 302 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHST-----TCCSEEEEEE-E-GGGGGGGHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHh-----cCCCceEEEE-c-CCCCCCHHHHHHHHHHh-----
Confidence 6655667888999999754 4566666666 8899 5555 7 99999999887655432
Q ss_pred cCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 559 SSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 559 ~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
.+++++|+||+|++ .++|.++++++.++.||.|+|+||.++||++|++++++++||.
T Consensus 303 -----~g~t~iiiThlD~~-~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~ll~ 359 (359)
T 2og2_A 303 -----VGITGLILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 359 (359)
T ss_dssp -----TCCCEEEEESCTTC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred -----cCCeEEEEecCccc-ccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHHhC
Confidence 37899999999998 8999999999999999999999999999999999999999973
No 5
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=100.00 E-value=4.7e-38 Score=328.57 Aligned_cols=268 Identities=29% Similarity=0.456 Sum_probs=221.7
Q ss_pred hccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccc
Q 007024 324 IAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDIL 403 (621)
Q Consensus 324 ~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL 403 (621)
+.|.+.++ +++.+++++++|+++||+.+++.+|++.+++.+.+..+.. ...++..+.+.|.+++.+... +
T Consensus 21 ~~~~~~~~---~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~---~ 90 (302)
T 3b9q_A 21 LLFWNLAE---TDRVLDELEEALLVSDFGPKITVRIVERLREDIMSGKLKS----GSEIKDALKESVLEMLAKKNS---K 90 (302)
T ss_dssp HTTCCGGG---HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCCS----HHHHHHHHHHHHHHHHCC--C---C
T ss_pred HcCCCcCC---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHHHhCCccc---c
Confidence 33555555 6789999999999999999999999999999887766533 456788899999999976432 3
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC-CCH
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE-KDP 482 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~-~d~ 482 (621)
.+++|.+.+|+ +++|+||||||||||+++|||++.+++|+|.+.++|+||.++++|++.+++..++++...... .++
T Consensus 91 ~~l~~~~~~g~--vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPA--VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCc--EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 45788888888 999999999999999999999999999999999999999999999999988777877665555 677
Q ss_pred HHHHHHHHHHHhhcCCCccccccchhHH-----------hHHHHHHHHHhhhhcCCCc--EEEEEeCCcCCCCHHHHHHH
Q 007024 483 AIVAKEAIQEATRNGSDVVLVDTAGRMQ-----------DNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 483 ~~ia~~al~~~~~~~~d~vliDtSGg~q-----------qr~~LaraL~~l~~~~~Pd--lILLVDEpt~GlD~~~q~~~ 549 (621)
...+.+.+.++...+++.+++|++|+.+ |++.++++|. .+|+ ++++ | ||+|+|+..+...
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~-----~~P~e~lLvL-D-ptsglD~~~~~~~ 241 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-----GAPNEILLVL-D-GNTGLNMLPQARE 241 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTST-----TCCSEEEEEE-E-GGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhc-----cCCCeeEEEE-e-CCCCcCHHHHHHH
Confidence 7777777776555567888999999854 3445555555 7898 5555 7 9999999988655
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
|++. .+++++|+||+|++ .++|.++++++.++.||.|+++||.++||+.|+++++|++||.
T Consensus 242 ~~~~----------~g~t~iiiThlD~~-~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~llg 302 (302)
T 3b9q_A 242 FNEV----------VGITGLILTKLDGS-ARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAIFS 302 (302)
T ss_dssp HHHH----------TCCCEEEEECCSSC-SCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHC
T ss_pred HHHh----------cCCCEEEEeCCCCC-CccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 5432 37899999999998 8999999999999999999999999999999999999999873
No 6
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=100.00 E-value=1.5e-37 Score=338.79 Aligned_cols=287 Identities=25% Similarity=0.437 Sum_probs=255.4
Q ss_pred hHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
.|++.|+++.|...|+++++++.+++++++|++.+|+.+++..+++.+++.+.+..+....+....+...+.++|.+++.
T Consensus 5 ~l~~~~~~l~~~~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~L~ 84 (433)
T 3kl4_A 5 NIRDAVRKFLTGSTPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKLFG 84 (433)
T ss_dssp THHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999999999999999999999999999999988776654445567788899999999998
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~ 475 (621)
+.....+ .. .+.|.+++|+|||||||||++++||+++.+.+++|+++++|+||.++++|+..+++..+++++.
T Consensus 85 ~~~~~~~----~~---~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~ 157 (433)
T 3kl4_A 85 GDKEPNV----NP---TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG 157 (433)
T ss_dssp SSSCCCC----SC---CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC
T ss_pred ccccccc----cc---cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceee
Confidence 6432111 11 2346799999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCCCccccccchhHH--hHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~q--qr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
.....++..++..++..+...++|++++||+|+.+ .+..++.++..+.+..+|+.++||.+++.|.++..+++.|++.
T Consensus 158 ~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~ 237 (433)
T 3kl4_A 158 EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA 237 (433)
T ss_dssp CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc
Confidence 77777888888888888777789999999999988 8888899999888888899999999999999998888777654
Q ss_pred HHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 554 LADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
+ +++++|+||+|.. .+.|.++++.+.+++||.|+|+||++.||+.|+|++++++||
T Consensus 238 ~----------~~~gVIlTKlD~~-a~~G~als~~~~~g~Pi~fig~Ge~v~dL~~f~p~~~~~~ll 293 (433)
T 3kl4_A 238 S----------PIGSVIITKMDGT-AKGGGALSAVVATGATIKFIGTGEKIDELETFNAKRFVSRIL 293 (433)
T ss_dssp C----------SSEEEEEECGGGC-SCHHHHHHHHHHHTCEEEEEECCSSSSCEEECCHHHHHHHHH
T ss_pred c----------CCcEEEEeccccc-ccchHHHHHHHHHCCCEEEEECCCChHhCccCCHHHHHHHhc
Confidence 3 7899999999997 899999999999999999999999999999999999999987
No 7
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=100.00 E-value=1e-37 Score=343.19 Aligned_cols=283 Identities=31% Similarity=0.488 Sum_probs=238.4
Q ss_pred ccchHHHHHHHhc--------------cCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccch
Q 007024 313 KTGWFSSMFQSIA--------------GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRI 378 (621)
Q Consensus 313 ~~~~~~~~~~~~~--------------~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~ 378 (621)
..|||.++.+.|. +.+.+++ +.+++|+++|+++||+.+++.+|++.|++.+.++.+...
T Consensus 192 ~~~~~~~l~~~l~kt~~~l~~~l~~~~~~~~ide----~~l~el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~--- 264 (503)
T 2yhs_A 192 KEGFFARLKRSLLKTKENLGSGFISLFRGKKIDD----DLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDA--- 264 (503)
T ss_dssp HHHHHHHHHHHTHHHHTTSTTHHHHHHTTCBCSH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBG---
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCH---
Confidence 4578776654432 2344554 588999999999999999999999999988766544332
Q ss_pred HHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeee
Q 007024 379 SSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA 458 (621)
Q Consensus 379 ~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Riga 458 (621)
..++..|.+.|.+++.+. .++++|.+..|+ +++|+||||||||||+++|+|++.+++|+|.|.++|+||.++
T Consensus 265 -~~~~~~l~~~l~~~l~~~-----~~~Isl~i~~Ge--VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa 336 (503)
T 2yhs_A 265 -EALYGLLKEEMGEILAKV-----DEPLNVEGKAPF--VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAA 336 (503)
T ss_dssp -GGHHHHHHHHHHHHHHTT-----BCCCCCCSCTTE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHH
T ss_pred -HHHHHHHHHHHHHHhCCC-----CCCceeeccCCe--EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhh
Confidence 346677888888888653 357888888888 999999999999999999999999999999999999999999
Q ss_pred eehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhc------CCCcEEE
Q 007024 459 VEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVL 532 (621)
Q Consensus 459 veQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~------~~PdlIL 532 (621)
++|++.+..+.+++++......++...+.+.+.++...++|++++||+|+.+.+..+|..|.++... ..|+.+|
T Consensus 337 ~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evL 416 (503)
T 2yhs_A 337 VEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVM 416 (503)
T ss_dssp HHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEE
T ss_pred HHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeE
Confidence 9999988777778777666666777778888888777889999999999998888888887776443 3588888
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCH
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNV 612 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~ 612 (621)
||.+|++|+++..+++.|++.+ +++++|+||+|++ .++|.++++++.+++||+|+|+||.+.||+.|++
T Consensus 417 LvLDattGq~al~~ak~f~~~~----------~itgvIlTKLD~t-akgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~ 485 (503)
T 2yhs_A 417 LTIDASTGQNAVSQAKLFHEAV----------GLTGITLTKLDGT-AKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKA 485 (503)
T ss_dssp EEEEGGGTHHHHHHHHHHHHHT----------CCSEEEEECGGGC-SCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCH
T ss_pred EEecCcccHHHHHHHHHHHhhc----------CCCEEEEEcCCCc-ccccHHHHHHHHHCCCEEEEecCCChhhcccCCH
Confidence 8899999999998887776543 7899999999997 8999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 007024 613 KSIVKTLLK 621 (621)
Q Consensus 613 ~~~v~~Ll~ 621 (621)
++|+++||.
T Consensus 486 ~~~v~~llg 494 (503)
T 2yhs_A 486 DDFIEALFA 494 (503)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999983
No 8
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=100.00 E-value=6.5e-36 Score=325.29 Aligned_cols=285 Identities=29% Similarity=0.445 Sum_probs=252.0
Q ss_pred hHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
-|++.|+++.|...++++++++.+++++.+|+++||+.+++.+|++.|++...|..+.........+...+.+.|..++.
T Consensus 8 ~l~~~~~~l~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~ 87 (425)
T 2ffh_A 8 RLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEALG 87 (425)
T ss_dssp HHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHhC
Confidence 36788999999999999999999999999999999999999999999999988887765556677888899999999997
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE 475 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~ 475 (621)
+.. .++++. ++ .+++|+|+|||||||++.+||+++.+.+++|+++++|++|.++++|+..+++..+++++.
T Consensus 88 ~~~-----~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 88 GEA-----RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp SSC-----CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCc-----ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 543 456775 44 499999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 476 KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 476 ~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
.+...++..++.++++.+...++|++++||+|+.+....++.+|..+.....|+.++||.++++|.|...+++.|+..
T Consensus 159 ~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~-- 236 (425)
T 2ffh_A 159 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK-- 236 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHH--
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhc--
Confidence 766678888877888877667899999999999987778888888777777899998888899999888777666543
Q ss_pred HhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 556 DLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 556 ~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
..++++|+||+|.. .+.|.++++.+.+|+||.|+|+||.++||+.|++++++++|+
T Consensus 237 --------l~i~GVIlTKlD~~-~~~g~alsi~~~~g~PI~flg~Ge~~~dl~~f~~~~~a~~il 292 (425)
T 2ffh_A 237 --------VGVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292 (425)
T ss_dssp --------TCCCEEEEESGGGC-SSCHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHH
T ss_pred --------CCceEEEEeCcCCc-ccHHHHHHHHHHHCCCEEEEeCCCChhhccccCHHHHHHHHh
Confidence 26789999999997 799999999999999999999999999999999999999987
No 9
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=100.00 E-value=4.6e-36 Score=312.84 Aligned_cols=288 Identities=27% Similarity=0.425 Sum_probs=247.7
Q ss_pred cchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007024 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (621)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~i 393 (621)
+..|+++|+++.|.+.++++++++.+++++++|+++||+.+++++|++.+++...+.++.........+...+.+.|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (297)
T 1j8m_F 4 LDNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL 83 (297)
T ss_dssp HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999998887776544455667788899999999
Q ss_pred cCCCCccccccc-cccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccc
Q 007024 394 LTPRRSIDILRD-VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 394 l~p~~~~~iL~d-Is~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~ 472 (621)
+.+.. .+ +++... + .+++|+|+||+||||++++||+++.+.+++|.+.++|++|.++.+|+..+++..+++
T Consensus 84 ~~~~~-----~~~i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~ 155 (297)
T 1j8m_F 84 FGGDK-----EPKVIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 155 (297)
T ss_dssp TTCSC-----CCCCSCSSS-S--EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCC
T ss_pred hcccc-----ccccccCCC-C--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeE
Confidence 97543 34 666543 4 499999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHH--hHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQ--DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~q--qr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
++......++..++.++++.+...++|++++||+|+.+ ....++.+|.++.....|+.+++|.+++.|.+...+.+.|
T Consensus 156 v~~~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 235 (297)
T 1j8m_F 156 VYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF 235 (297)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHH
Confidence 87765567788887788887766789999999999988 6667887777666667899999989999888777665444
Q ss_pred HHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 551 NQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
++ ...+.++|+||+|.. .+.|.++++++.+++||.|+|+||+++||+.|+|++++++||
T Consensus 236 ~~----------~~~i~gvVlnk~D~~-~~~g~~~~~~~~~~~pi~~i~~Ge~v~dl~~f~~~~~~~~ll 294 (297)
T 1j8m_F 236 NQ----------ASKIGTIIITKMDGT-AKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLH 294 (297)
T ss_dssp HH----------TCTTEEEEEECGGGC-TTHHHHHHHHHTTTCCEEEEECSSSTTCEEECCHHHHHHTTC
T ss_pred Hh----------hCCCCEEEEeCCCCC-cchHHHHHHHHHHCcCEEEEeCCCChhhcccCCHHHHHHHHh
Confidence 32 136789999999997 789999999999999999999999999999999999999987
No 10
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=100.00 E-value=1.5e-36 Score=317.59 Aligned_cols=276 Identities=30% Similarity=0.468 Sum_probs=213.0
Q ss_pred HHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCC
Q 007024 318 SSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPR 397 (621)
Q Consensus 318 ~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~ 397 (621)
++.++++.+...+++ ++++.+++++++|+++||+.+++.+|++.+++... ..++.++.+.|.+++.+.
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~l~~~ 79 (304)
T 1rj9_A 12 AKTRERLLKAIPWGG-NLEEVLEELEMALLAADVGLSATEEILQEVRASGR-----------KDLKEAVKEKLVGMLEPD 79 (304)
T ss_dssp ----------------CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC-----------SSTTHHHHHHHTTTTCTT
T ss_pred HHHHHHhhcccccch-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhCcc
Confidence 344555555555676 78999999999999999999999999999987643 235567888899998765
Q ss_pred Ccccccccccccc-----ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccc
Q 007024 398 RSIDILRDVHAAK-----EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 398 ~~~~iL~dIs~~i-----~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~ 472 (621)
...+.+..+++.- ..+++.+++|+||||||||||+++|++++.|++|+|.+.++|+||.++++|+..+.+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~ 159 (304)
T 1rj9_A 80 ERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 159 (304)
T ss_dssp CHHHHHHHTTCCCCCCCCCCCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCC
T ss_pred cccccccccccccccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCce
Confidence 4210000112210 11233499999999999999999999999999999999999999999999999988877888
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHh-----------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQD-----------NEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qq-----------r~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++...++.++...+.+.+..+...+++.+++||+|+.+. +..++|+|. .+|+.++|+.+|+++.
T Consensus 160 ~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~-----~~P~~~lLvLDa~t~~ 234 (304)
T 1rj9_A 160 VIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP-----EEPKEVWLVLDAVTGQ 234 (304)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCT-----TCCSEEEEEEETTBCT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhc-----CCCCeEEEEEcHHHHH
Confidence 776666677777777777766556788889999997543 444555555 7899888888899999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
+...++..|++.. +++++|+||.|++ .+.|.++++++.+++||.|+|+||.++||++|+|+++|++||.
T Consensus 235 ~~~~~~~~~~~~~----------~~t~iivTh~d~~-a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~ll~ 303 (304)
T 1rj9_A 235 NGLEQAKKFHEAV----------GLTGVIVTKLDGT-AKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEALLE 303 (304)
T ss_dssp HHHHHHHHHHHHH----------CCSEEEEECTTSS-CCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc----------CCcEEEEECCccc-ccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 9888876665443 7899999999997 7999999999999999999999999999999999999999983
No 11
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=100.00 E-value=1.2e-35 Score=312.83 Aligned_cols=282 Identities=28% Similarity=0.441 Sum_probs=229.4
Q ss_pred HHHHHHHhccC-cccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 317 FSSMFQSIAGK-ANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 317 ~~~~~~~~~~~-~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
|++.++++.+. +.++++ .+++++++|+++||+.+++.+|++.+++.+.+.++.. .++.++.+.|.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~ 87 (320)
T 1zu4_A 18 FSKDIKKLSKKYKQADDE----FFEELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFE------NIKDALVESLYQAYT 87 (320)
T ss_dssp HHHHHHHHHHTCCCCSHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHH------HHHHHHHHHHHHHhC
Confidence 45566666554 667764 7899999999999999999999999999887754432 288889999999997
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh---hcccc
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR---RLQVP 472 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~---~L~v~ 472 (621)
+....+++.+++|...+++ +++|+|+||+||||++++||+++.+.+++|+++++|+||.++++|+..+.+ ..+++
T Consensus 88 ~~~~~~~~~~l~~~~~~~~--vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~ 165 (320)
T 1zu4_A 88 DNDWTNKKYRIDFKENRLN--IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVD 165 (320)
T ss_dssp CSCC----CCCCCCTTSCE--EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEE
T ss_pred cccccccccCccccCCCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCce
Confidence 6654445568888876666 999999999999999999999999999999999999999999999988876 66777
Q ss_pred ee-ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhc------CCCcEEEEEeCCcCCCCHHH
Q 007024 473 IF-EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 473 l~-~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~------~~PdlILLVDEpt~GlD~~~ 545 (621)
++ ......++...+.+.+......+||++++||+|+.+....++.+|.++... ..|+.++||.+++.+.+...
T Consensus 166 vip~~~~~~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~ 245 (320)
T 1zu4_A 166 LVKANKLNADPASVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVI 245 (320)
T ss_dssp EECCSSTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHH
Confidence 76 444556777666777766666789999999999999877777777654333 34888888888988866665
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
+.+.|+ ....++++|+||+|.. .+.|.++++.+.+++||.|+|+||.++||+.|++++++++||.
T Consensus 246 ~~~~~~----------~~~~i~GvVltk~d~~-~~~g~~~~~~~~~~~Pi~~i~~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 246 QAEEFS----------KVADVSGIILTKMDST-SKGGIGLAIKELLNIPIKMIGVGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp HHHHHT----------TTSCCCEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHHTG
T ss_pred HHHHHh----------hcCCCcEEEEeCCCCC-CchhHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHhC
Confidence 543332 1247899999999997 7899999999999999999999999999999999999999973
No 12
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=100.00 E-value=2.1e-35 Score=309.08 Aligned_cols=267 Identities=31% Similarity=0.488 Sum_probs=221.4
Q ss_pred HHHHHhc-cCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCC
Q 007024 319 SMFQSIA-GKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPR 397 (621)
Q Consensus 319 ~~~~~~~-~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~ 397 (621)
+.++++. |. .+++ +.+++++++|+++||+.+++++|++.+++ . +. . ++.++.+.|.+++.+.
T Consensus 32 ~~~~~~~~~~-~~~~----~~~~~l~~~L~~~dv~~~~~~~~~~~~~~------~----~~-~-~~~~~~~~l~~~l~~~ 94 (306)
T 1vma_A 32 GRVVKLLKGK-KLDD----ETREELEELLIQADVGVETTEYILERLEE------K----DG-D-ALESLKEIILEILNFD 94 (306)
T ss_dssp HHHHHHHTTC-CCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHTT------C----CS-C-HHHHHHHHHHHHTCSC
T ss_pred HHHHHHhcCC-CCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHh------c----CH-H-HHHHHHHHHHHHhCCC
Confidence 3444444 44 6775 58999999999999999999999999865 1 11 2 6778899999999754
Q ss_pred CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecC
Q 007024 398 RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKG 477 (621)
Q Consensus 398 ~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~ 477 (621)
. .+++...+++ +++|+|||||||||++++||+++.+.+++|.++++|+||.++++|+..+.+.++++++...
T Consensus 95 ~------~~~~~~~~~~--vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 95 T------KLNVPPEPPF--VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp C------CCCCCSSSCE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred C------CCcccCCCCe--EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 3 2344434444 9999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhc------CCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYL------NNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~------~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
.+.++..++.+++..+...++|++++||+|+.+....++..|.++... ..|+.++||.+++++.+...+.+.|+
T Consensus 167 s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a~~~~ 246 (306)
T 1vma_A 167 EGADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFK 246 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 677888777777777667789999999999987777777777665443 35898888888888877766655554
Q ss_pred HHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhhC
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK 621 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll~ 621 (621)
+. .+++++|+||+|++ .++|.++++++.+++||.|+|+||.++||++|++++++++||.
T Consensus 247 ~~----------~~i~gvVlTk~D~~-~~gG~~l~~~~~~~~Pi~~i~~Ge~~~dl~~f~~~~~~~~ll~ 305 (306)
T 1vma_A 247 EA----------VNVTGIILTKLDGT-AKGGITLAIARELGIPIKFIGVGEKAEDLRPFDPEAFVEVLLS 305 (306)
T ss_dssp HH----------SCCCEEEEECGGGC-SCTTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHTC
T ss_pred hc----------CCCCEEEEeCCCCc-cchHHHHHHHHHHCCCEEEEeCCCChhhcccCCHHHHHHHHhC
Confidence 32 37899999999997 8999999999999999999999999999999999999999983
No 13
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=100.00 E-value=8.6e-34 Score=295.31 Aligned_cols=284 Identities=30% Similarity=0.453 Sum_probs=234.0
Q ss_pred HHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007024 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (621)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p 396 (621)
|++.++++.+.+.++++++.+.+++++..|+..++..+++..|++++.....|+.+....+....+...+.+.|...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 88 (295)
T 1ls1_A 9 LQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKEALGG 88 (295)
T ss_dssp HHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHHHCC
Confidence 56788999999999999999999999999999999999999999999887777655432233455666777788887754
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeec
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~ 476 (621)
.. +++++. +|+ +++|+|+||+||||++.+||+++.+.+++|.+.++|++|.++++|+..+.+..+++++..
T Consensus 89 ~~-----~~i~~~--~~~--~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~ 159 (295)
T 1ls1_A 89 EA-----RLPVLK--DRN--LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEV 159 (295)
T ss_dssp SC-----CCCCCC--SSE--EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CC-----ceeecC--CCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEc
Confidence 31 467776 555 999999999999999999999999999999999999999999999998888888888765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
+...++..+...+++.+...++|++++||+|+...+..++.++..+.....|+.+++|.+++.+.+...+.+.|+..
T Consensus 160 ~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~--- 236 (295)
T 1ls1_A 160 MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK--- 236 (295)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHH---
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhc---
Confidence 55667877777777776657899999999998877777788887777767899998888888887766655444432
Q ss_pred hhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 557 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
..+.++|+||+|.. .+.|.++++++.+|+||.|+|+||+++||++|+|++++++||
T Consensus 237 -------~~i~givlnk~d~~-~~~g~~~~~~~~~~~pi~~i~~g~~~~dl~~f~~~~~~~~ll 292 (295)
T 1ls1_A 237 -------VGVTGLVLTKLDGD-ARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRIL 292 (295)
T ss_dssp -------TCCCEEEEECGGGC-SSCHHHHHHHHHHCCCEEEEC------CCEECCHHHHHHHHT
T ss_pred -------CCCCEEEEECCCCC-ccHHHHHHHHHHHCcCEEEEeCCCCccccccCCHHHHHHHHh
Confidence 26789999999997 799999999999999999999999999999999999999997
No 14
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=100.00 E-value=6.8e-33 Score=302.78 Aligned_cols=287 Identities=27% Similarity=0.456 Sum_probs=248.2
Q ss_pred hHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcC
Q 007024 316 WFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILT 395 (621)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~ 395 (621)
.|++.|+++.|...++++++++.+++++.+|+++||+.+++.+|++.+++...|..+....+....+..++.++|.+++.
T Consensus 8 ~l~~~~~~~~~~~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (433)
T 2xxa_A 8 RLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMG 87 (433)
T ss_dssp HHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999999999999998887755445556677889999999997
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
+... .+.+ ..+.|++++|+|++||||||++.+||.++... +.+|+++++|+||.++++|+.++.+..+++++
T Consensus 88 ~~~~-----~~~~--~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~ 160 (433)
T 2xxa_A 88 EENQ-----TLNL--AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF 160 (433)
T ss_dssp SSSC-----CCCC--CSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEEC
T ss_pred cccc-----cccc--cCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEE
Confidence 5431 1222 34567899999999999999999999999888 88999999999999999999999999999988
Q ss_pred ecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHH
Q 007024 475 EKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKL 554 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L 554 (621)
..+.+.++..++.+++..+...++|++++||+|+.+....++.+|..+.....|+.+++|.+++.|.|...+.+.|+..
T Consensus 161 ~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~- 239 (433)
T 2xxa_A 161 PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEA- 239 (433)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHH-
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhcc-
Confidence 7666677888877788777667899999999999887677888887776678899999988899999988776555432
Q ss_pred HHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 555 ADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 555 ~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
..+.++|+||+|.. .+.|.++++...+++||.|+|+||.+.||..|+++.++++|+
T Consensus 240 ---------l~i~gvVlnK~D~~-~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~ 295 (433)
T 2xxa_A 240 ---------LPLTGVVLTKVDGD-ARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRIL 295 (433)
T ss_dssp ---------SCCCCEEEECTTSS-SCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHH
T ss_pred ---------CCCeEEEEecCCCC-ccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHh
Confidence 36788999999997 788999999999999999999999999999999999999886
No 15
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=100.00 E-value=1.1e-31 Score=293.03 Aligned_cols=286 Identities=27% Similarity=0.439 Sum_probs=239.4
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
..|++.|+++.|.+.++++++++.+++++.+|++.+|+..++.++++.+++...+.++...-.....+...+.+.|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~e~~~~~~~~e~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 85 (432)
T 2v3c_C 6 ENLNKALNKLKAAAFVDKKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKLL 85 (432)
T ss_dssp HHHHHHHHHCCSSSCCCSSTTHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHHh
Confidence 44778999999999999999999999999999999999999999999999988776544333445557788899999999
Q ss_pred CCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccccee
Q 007024 395 TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 395 ~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~ 474 (621)
.+... .+.+..++|++++|+|++||||||++++||+++...+.+|+++++|+||.++++|++.+++..+++++
T Consensus 86 ~~~~~-------~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~ 158 (432)
T 2v3c_C 86 GEEAK-------KLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 158 (432)
T ss_dssp CCSCC-------CCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEE
T ss_pred CCCCc-------CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceE
Confidence 75422 12233466779999999999999999999999998889999999999999999999999999999887
Q ss_pred ecC-CCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHH
Q 007024 475 EKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQK 553 (621)
Q Consensus 475 ~~~-~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~ 553 (621)
... ...++..++.+++..+ .++|++++||+|+.+....++.+|..+.....|+.++||.+++.|.|...+.+.|+
T Consensus 159 ~~~~~~~dp~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~-- 234 (432)
T 2v3c_C 159 GDETRTKSPVDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFK-- 234 (432)
T ss_dssp CCSSSCCSSSTTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHH--
T ss_pred ecCCCCCCHHHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHh--
Confidence 654 4445544445555554 67899999999999877888888887777778999999999999988766543332
Q ss_pred HHHhhcCCCCC-CceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 554 LADLSSSPNPQ-LIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 554 L~~l~~~~~~~-~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
... .++++|+||+|.. .+.|.++++.+.++.||.|+|+||.+.||..|++..++++++
T Consensus 235 --------~~~~~i~gvVlnK~D~~-~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~ 293 (432)
T 2v3c_C 235 --------EAVGEIGSIIVTKLDGS-AKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLL 293 (432)
T ss_dssp --------TTSCSCEEEEEECSSSC-STTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHT
T ss_pred --------hcccCCeEEEEeCCCCc-cchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHc
Confidence 123 5689999999997 788999999999999999999999999999999999999886
No 16
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.97 E-value=2.2e-31 Score=295.26 Aligned_cols=286 Identities=26% Similarity=0.489 Sum_probs=240.7
Q ss_pred HHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCC
Q 007024 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTP 396 (621)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p 396 (621)
|++.|+++.+...++++++++++++++.+|++.+|+.+++.++++.|++...+..+....+....+...+.++|.+++.+
T Consensus 10 l~~~~~~l~~~~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~ll~~ 89 (504)
T 2j37_W 10 ITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDP 89 (504)
T ss_dssp TTTTTTCCCSCSSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHHhcc
Confidence 44567888888899999999999999999999999999999999999988887776544455667888999999999976
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeec
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK 476 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~ 476 (621)
... . +.+..++|++|+|+|++|||||||+++|+.++...+.+|+++++|+||.++++|+..+....+++++..
T Consensus 90 ~~~-----~--~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~ 162 (504)
T 2j37_W 90 GVK-----A--WTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGS 162 (504)
T ss_dssp CCC-----C--CCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEEC
T ss_pred ccc-----h--hccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEcc
Confidence 432 1 122234577999999999999999999999998888899999999999999999999998889998876
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 477 GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
....++..++.+++..+...++|++++||+|+.+....++.++..+.....|+.++||.+++.|.+...+...|++.+
T Consensus 163 ~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~~~~~~-- 240 (504)
T 2j37_W 163 YTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKV-- 240 (504)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHHHHHHH--
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHHHHhhc--
Confidence 666788888777887776678999999999998766667777665555558999999999999998777665554432
Q ss_pred hhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCCcccCCCHHHHHHHhh
Q 007024 557 LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYTDLKKLNVKSIVKTLL 620 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~DL~~~~~~~~v~~Ll 620 (621)
.++++|+||+|.. .+.|.++++.+.+|+||.|+|+|+.+.||..|++..++++++
T Consensus 241 --------~i~gvVlNK~D~~-~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~ 295 (504)
T 2j37_W 241 --------DVASVIVTKLDGH-AKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLL 295 (504)
T ss_dssp --------CCCCEEEECTTSC-CCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCC
T ss_pred --------CceEEEEeCCccc-cchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhc
Confidence 5678999999997 788999999999999999999999999999999999998765
No 17
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.97 E-value=1.3e-29 Score=264.07 Aligned_cols=259 Identities=24% Similarity=0.296 Sum_probs=201.0
Q ss_pred ccchHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCcccccccccccc
Q 007024 332 KADLEPALKALKDRLMTKNVAEEIAEKLCESV-AASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAK 410 (621)
Q Consensus 332 ~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v-~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i 410 (621)
..++++.+++++++|++.||+.+++.+|++.+ +..+.+... . ...++..+.+.|.+++.+... +.+.
T Consensus 35 ~~~~~~~~~~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~l~~~l~~~~~------~~~~- 102 (296)
T 2px0_A 35 QSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGL---T--EENVVGKLQEILCDMLPSADK------WQEP- 102 (296)
T ss_dssp ----CCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHSSSCC---C--TTTHHHHHHHHHHTTSCCGGG------SCCC-
T ss_pred ccccHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhcccCC---C--HHHHHHHHHHHHHHHhCCccc------cccc-
Confidence 44667799999999999999999999999999 565544322 1 145777888899998865432 1221
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-EEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-kV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
.+|+ +++|+|||||||||++++||+++.+..| +|.+.++|+||.++.+|+..+++.++++++.. .++.. ...+
T Consensus 103 ~~g~--vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~---~~~~~-l~~a 176 (296)
T 2px0_A 103 IHSK--YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC---YTKEE-FQQA 176 (296)
T ss_dssp CCSS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC---SSHHH-HHHH
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec---CCHHH-HHHH
Confidence 2455 9999999999999999999999998545 99999999999999999999999988887542 23333 3444
Q ss_pred HHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 490 IQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+..+ .++|++++||+|+......++..|.+++....|+.+++|.+++.+.+.. ..+........++++
T Consensus 177 l~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~----------~~~~~~~~~l~~~gi 244 (296)
T 2px0_A 177 KELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDM----------KHIVKRFSSVPVNQY 244 (296)
T ss_dssp HHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH----------HHHTTTTSSSCCCEE
T ss_pred HHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH----------HHHHHHHhcCCCCEE
Confidence 5433 6789999999999987777787777776655677777777777664322 222233334578899
Q ss_pred EeccccccccchhHHHHhHHHhCCcEEEEecCCCCC-cccCCCHHHHHHHhhC
Q 007024 570 LLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT-DLKKLNVKSIVKTLLK 621 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~-DL~~~~~~~~v~~Ll~ 621 (621)
|+||+|.. .+.|.++++++.+|+||.|+++||+|| ||+.|++++++++||.
T Consensus 245 Vltk~D~~-~~~g~~~~~~~~~~~pi~~i~~ge~vp~dl~~f~~~~~~~~llg 296 (296)
T 2px0_A 245 IFTKIDET-TSLGSVFNILAESKIGVGFMTNGQNVPEDIQTVSPLGFVRMLCR 296 (296)
T ss_dssp EEECTTTC-SCCHHHHHHHHTCSCCCSEECCSSCTTTSCBCCCHHHHHHHHTC
T ss_pred EEeCCCcc-cchhHHHHHHHHHCcCEEEEECCCCChHHHhcCCHHHHHHHHcC
Confidence 99999998 799999999999999999999999995 9999999999999973
No 18
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=9.3e-24 Score=225.03 Aligned_cols=184 Identities=15% Similarity=0.164 Sum_probs=136.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----------ceeeeeehhhhhhh
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----------FRSGAVEQLRTHAR 467 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----------~RigaveQl~~~~~ 467 (621)
...+|++|||++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++ .++|+++|...+..
T Consensus 16 ~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp TEEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred CEEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 3568999999999999 9999999999999999999999999999999999875 24999999764443
Q ss_pred hc------ccceeecCCCC-CHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 468 RL------QVPIFEKGYEK-DPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 468 ~L------~v~l~~~~~~~-d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
.+ ..++....... .....+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||+
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~-----~~P~lLLL-DEPts 167 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA-----PDPELILL-DEPFS 167 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTT
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcc
Confidence 33 22221111111 123455667777766554 6788899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+||+..+...+ +.+..+.+ ..++++|++|. | ...+. ...-.|+++-.|+-+
T Consensus 168 ~LD~~~r~~l~-~~l~~~~~---~~g~tvi~vTH-d-----~~ea~----~~aDri~vl~~G~i~ 218 (359)
T 3fvq_A 168 ALDEQLRRQIR-EDMIAALR---ANGKSAVFVSH-D-----REEAL----QYADRIAVMKQGRIL 218 (359)
T ss_dssp TSCHHHHHHHH-HHHHHHHH---HTTCEEEEECC-C-----HHHHH----HHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHH-HHHHHHHH---hCCCEEEEEeC-C-----HHHHH----HHCCEEEEEECCEEE
Confidence 99999875444 44444432 23788888886 2 22233 334477777777765
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=5.5e-24 Score=227.09 Aligned_cols=181 Identities=19% Similarity=0.191 Sum_probs=139.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~ 467 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.|.|+. ++|+++|...+..
T Consensus 41 ~~aL~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 41 IQALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred eEEEEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 568999999999999 99999999999999999999999999999999998762 3999999764333
Q ss_pred ------hcccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 468 ------RLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 468 ------~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
++..++.. ++... ...+.++++.+++.++ +..+..+||||+||+.|||+|+ .+|+++|| |||
T Consensus 119 ~~TV~env~~~~~~--~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~-----~~P~lLLl-DEP 190 (366)
T 3tui_C 119 SRTVFGNVALPLEL--DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA-----SNPKVLLC-DQA 190 (366)
T ss_dssp TSCHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT-----TCCSEEEE-EST
T ss_pred CCCHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECC
Confidence 33222211 12222 2345566766665543 6778899999999999999999 99999999 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+|||+..+.. +.+.|+.+.+. .+++++++|. .... +....-.|+++-.|+-+
T Consensus 191 Ts~LD~~~~~~-i~~lL~~l~~~---~g~Tii~vTH------dl~~----~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 191 TSALDPATTRS-ILELLKDINRR---LGLTILLITH------EMDV----VKRICDCVAVISNGELI 243 (366)
T ss_dssp TTTSCHHHHHH-HHHHHHHHHHH---SCCEEEEEES------CHHH----HHHHCSEEEEEETTEEE
T ss_pred CccCCHHHHHH-HHHHHHHHHHh---CCCEEEEEec------CHHH----HHHhCCEEEEEECCEEE
Confidence 99999998754 44777777542 3778888885 2222 33445578888888765
No 20
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.90 E-value=9.5e-24 Score=217.64 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=134.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhh-----
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRT----- 464 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~----- 464 (621)
.+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++. ++|+++|...
T Consensus 22 ~~L~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred eEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 48999999999999 99999999999999999999999999999999998761 4999999652
Q ss_pred --hhhhcccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 465 --HARRLQVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 465 --~~~~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+++.... ..++... ...+.++++.+.+..+ +..+..+||||+||+.||++|+ .+|+++|| ||||
T Consensus 100 ~tv~e~l~~~~--~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~-----~~P~lLlL-DEPt 171 (275)
T 3gfo_A 100 ASVYQDVSFGA--VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLV-----MEPKVLIL-DEPT 171 (275)
T ss_dssp SBHHHHHHHHH--HTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ECTT
T ss_pred CcHHHHHHHHH--HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-ECcc
Confidence 122222211 1122222 2345556666555443 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc-cccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF-DTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~-De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
+|||+..+. .+.+.+..+.+. .+.++|++|.- +. +....-.|+++..|+-+.
T Consensus 172 s~LD~~~~~-~i~~~l~~l~~~---~g~tvi~vtHdl~~-----------~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 172 AGLDPMGVS-EIMKLLVEMQKE---LGITIIIATHDIDI-----------VPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp TTCCHHHHH-HHHHHHHHHHHH---HCCEEEEEESCCSS-----------GGGGCSEEEEEETTEEEE
T ss_pred ccCCHHHHH-HHHHHHHHHHhh---CCCEEEEEecCHHH-----------HHHhCCEEEEEECCEEEE
Confidence 999999875 455777777521 15677777762 22 223345778888887653
No 21
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.90 E-value=2.1e-23 Score=214.09 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=138.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh----
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH---- 465 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~---- 465 (621)
...+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.|.++. ++|+++|...+
T Consensus 23 ~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 23 QQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp TEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred CeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 3568999999999999 99999999999999999999999999999999998762 38899886533
Q ss_pred --hhhcccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcC------CCcEEEEEeC
Q 007024 466 --ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLN------NPDLVLFVGE 536 (621)
Q Consensus 466 --~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~------~PdlILLVDE 536 (621)
.+++...... .........+.++++.+...++ +..+..+||||+||+.|||+|+ . +|+++|| ||
T Consensus 101 tv~e~l~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~-----~~~~~~~~p~lLll-DE 173 (266)
T 4g1u_C 101 SVSEVIQMGRAP-YGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA-----QLWQPQPTPRWLFL-DE 173 (266)
T ss_dssp BHHHHHHGGGTT-SCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH-----HTCCSSCCCEEEEE-CC
T ss_pred CHHHHHHhhhhh-cCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh-----cccccCCCCCEEEE-eC
Confidence 2222221111 1122344556677777666554 6677889999999999999999 7 9999999 99
Q ss_pred CcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 537 ALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 537 pt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||+|||+..+. .+.+.|..+.+. .+.++|++|. | .. .+....-.|+++..|+-+.
T Consensus 174 Pts~LD~~~~~-~i~~~l~~l~~~---~~~tvi~vtH-d-----l~----~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 174 PTSALDLYHQQ-HTLRLLRQLTRQ---EPLAVCCVLH-D-----LN----LAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp CCSSCCHHHHH-HHHHHHHHHHHH---SSEEEEEECS-C-----HH----HHHHHCSEEEEEETTEEEE
T ss_pred ccccCCHHHHH-HHHHHHHHHHHc---CCCEEEEEEc-C-----HH----HHHHhCCEEEEEECCEEEE
Confidence 99999999875 455777777643 2567888775 2 22 2334455788888888763
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.90 E-value=1.4e-23 Score=211.42 Aligned_cols=183 Identities=21% Similarity=0.208 Sum_probs=135.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+.
T Consensus 18 ~~~L~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 458999999999999 99999999999999999999999999999999997751 399999976443
Q ss_pred hh------cccceeecC-CCCCHH---HHHHHHHHHHhhcC-C-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RR------LQVPIFEKG-YEKDPA---IVAKEAIQEATRNG-S-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~------L~v~l~~~~-~~~d~~---~ia~~al~~~~~~~-~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.. +..+..... ...... ..+.++++.+...+ . +..+..+||||+||+.|||+|+ .+|+++||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~-----~~p~llll- 169 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA-----NNPPIILA- 169 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 33 222211110 112222 23444555544433 2 5668899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+|||+..+. .+.+.+..+... .+.++|++|. | .. + + ...-.|+++..|+-+.
T Consensus 170 DEPts~LD~~~~~-~i~~~l~~l~~~---~g~tvi~vtH-d-----~~-~---~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 170 DQPTWALDSKTGE-KIMQLLKKLNEE---DGKTVVVVTH-D-----IN-V---A-RFGERIIYLKDGEVER 225 (235)
T ss_dssp ESTTTTSCHHHHH-HHHHHHHHHHHH---HCCEEEEECS-C-----HH-H---H-TTSSEEEEEETTEEEE
T ss_pred eCCcccCCHHHHH-HHHHHHHHHHHH---cCCEEEEEcC-C-----HH-H---H-HhCCEEEEEECCEEEE
Confidence 9999999999875 444777777532 2677888875 2 22 1 2 3455889999998764
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=1.2e-23 Score=210.44 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=132.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|+++||++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+.
T Consensus 17 ~~~l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 17 YEILKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp EEEEEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred EeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 458999999999999 99999999999999999999999999999999987751 389999965333
Q ss_pred hhc----ccceeecCCCCC---HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRL----QVPIFEKGYEKD---PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L----~v~l~~~~~~~d---~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+ ++.+....++.. ....+.++++.+...++ +..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~-----~~p~lllL-DEPt 168 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALA-----NEPILLFA-DEPT 168 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTT-----TCCSEEEE-ESTT
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCC
Confidence 222 111111111111 12344556666655443 6677899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+|||+..+. .+.+.+..+.+. +.++|++|.- ... + ...-.|+++..|+-+
T Consensus 169 ~~LD~~~~~-~~~~~l~~l~~~----g~tvi~vtHd------~~~----~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 169 GNLDSANTK-RVMDIFLKINEG----GTSIVMVTHE------REL----A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp TTCCHHHHH-HHHHHHHHHHHT----TCEEEEECSC------HHH----H-TTSSEEEEEETTEEE
T ss_pred CCCCHHHHH-HHHHHHHHHHHC----CCEEEEEcCC------HHH----H-HhCCEEEEEECCEEE
Confidence 999998874 455777777543 5678887752 111 2 234467777777654
No 24
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=2.9e-23 Score=212.47 Aligned_cols=182 Identities=18% Similarity=0.166 Sum_probs=134.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------------------eee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------------------RSG 457 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------------------Rig 457 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|
T Consensus 19 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 19 HEVLKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred EEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 458999999999999 99999999999999999999999999999999987652 389
Q ss_pred eeehhhhhhhhc----ccceee-cCCCCCH---HHHHHHHHHHHhhcCC--CccccccchhHHhHHHHHHHHHhhhhcCC
Q 007024 458 AVEQLRTHARRL----QVPIFE-KGYEKDP---AIVAKEAIQEATRNGS--DVVLVDTAGRMQDNEPLMRALSKLIYLNN 527 (621)
Q Consensus 458 aveQl~~~~~~L----~v~l~~-~~~~~d~---~~ia~~al~~~~~~~~--d~vliDtSGg~qqr~~LaraL~~l~~~~~ 527 (621)
+++|...+...+ ++.+.. ..++... ...+.++++.+.+.++ +..+..+||||+||+.||++|+ .+
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~-----~~ 171 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA-----ME 171 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHH-----TC
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHh-----cC
Confidence 999975333222 111110 1112222 2344556666554432 5667889999999999999999 99
Q ss_pred CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 528 PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 528 PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+++|| ||||+|||+..+. .+.+.|..+.+. +.++|++|.- ... +....-.|+++..|+-+
T Consensus 172 p~lllL-DEPts~LD~~~~~-~~~~~l~~l~~~----g~tvi~vtHd------~~~----~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 172 PDVLLF-DEPTSALDPELVG-EVLRIMQQLAEE----GKTMVVVTHE------MGF----ARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp CSEEEE-ESTTTTSCHHHHH-HHHHHHHHHHHT----TCCEEEECSC------HHH----HHHHCSEEEEEETTEEE
T ss_pred CCEEEE-eCCCccCCHHHHH-HHHHHHHHHHhC----CCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 999999 9999999999874 555777777543 5677887751 222 33344578888888765
No 25
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.89 E-value=2.8e-23 Score=222.81 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=137.8
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc-
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~- 470 (621)
...+|++|||++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 15 ~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp TEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred CEEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 3568999999999999 99999999999999999999999999999999998762 4999999764443331
Q ss_pred ---cceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 471 ---VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 471 ---v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~-----~~P~lLLL-DEPts~LD~ 166 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV-----AEPSVFLL-DEPLSNLDA 166 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----HCCSEEEE-ESTTTTSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCCcCCCH
Confidence 111111122222 2345566666655443 6778899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+. .+.+.|..+.+. .++++|++|. | ...+. ...-.|+++-.|+-+
T Consensus 167 ~~~~-~l~~~l~~l~~~---~g~tii~vTH-d-----~~ea~----~~aDri~vl~~G~i~ 213 (381)
T 3rlf_A 167 ALRV-QMRIEISRLHKR---LGRTMIYVTH-D-----QVEAM----TLADKIVVLDAGRVA 213 (381)
T ss_dssp HHHH-HHHHHHHHHHHH---HCCEEEEECS-C-----HHHHH----HHCSEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHHHHh---CCCEEEEEEC-C-----HHHHH----HhCCEEEEEECCEEE
Confidence 9875 444667666532 3678888886 2 22233 334478888888765
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.89 E-value=3.9e-23 Score=211.74 Aligned_cols=182 Identities=18% Similarity=0.200 Sum_probs=134.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTHARR 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~~~~~ 468 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++. ++|+++|...+...
T Consensus 37 ~~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~ 114 (263)
T 2olj_A 37 LEVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114 (263)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCC
Confidence 458999999999999 99999999999999999999999999999999997651 38999997543332
Q ss_pred c----ccceee-cCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 469 L----QVPIFE-KGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 469 L----~v~l~~-~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
+ ++.+.. ..++... ...+.++++.+.+.++ +..+..+||||+||+.||++|+ .+|+++|| ||||+
T Consensus 115 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~-----~~p~lllL-DEPts 188 (263)
T 2olj_A 115 MTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALA-----MEPKIMLF-DEPTS 188 (263)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----CCCCEEEE-eCCcc
Confidence 2 111110 1112222 2344556666655443 6677899999999999999999 99999999 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+..+. .+.+.|..+.+. +.++|++|.- . ..+....-.|+++..|+-+
T Consensus 189 ~LD~~~~~-~~~~~l~~l~~~----g~tvi~vtHd------~----~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 189 ALDPEMVG-EVLSVMKQLANE----GMTMVVVTHE------M----GFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp TSCHHHHH-HHHHHHHHHHHT----TCEEEEECSC------H----HHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHH-HHHHHHHHHHhC----CCEEEEEcCC------H----HHHHHhCCEEEEEECCEEE
Confidence 99999874 555777777542 5678887751 1 1233445578888888765
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.89 E-value=5.3e-23 Score=209.76 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=133.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~~L 469 (621)
..+|++|||++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+
T Consensus 20 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 20 FKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp EEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred EeeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 458999999999999 99999999999999999999999999999999987651 389999976443332
Q ss_pred c----cceeecC--CC------------CC--HHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCC
Q 007024 470 Q----VPIFEKG--YE------------KD--PAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP 528 (621)
Q Consensus 470 ~----v~l~~~~--~~------------~d--~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~P 528 (621)
. +.+.... ++ .. ....+.++++.+...+ .+..+..+||||+|++.||++|+ .+|
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~-----~~p 172 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM-----TNP 172 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TCC
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH-----cCC
Confidence 1 1111111 11 11 1234556666665543 36678899999999999999999 999
Q ss_pred cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 529 DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 529 dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+++|| ||||+|||+..+. .+.+.+..+.+. +.++|++|. ++.+ ....-.|+++..|+-+
T Consensus 173 ~lllL-DEPts~LD~~~~~-~l~~~l~~l~~~----g~tvi~vtHd~~~~-----------~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 173 KMIVM-DEPIAGVAPGLAH-DIFNHVLELKAK----GITFLIIEHRLDIV-----------LNYIDHLYVMFNGQII 232 (257)
T ss_dssp SEEEE-ESTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECSCCSTT-----------GGGCSEEEEEETTEEE
T ss_pred CEEEE-eCCccCCCHHHHH-HHHHHHHHHHHC----CCEEEEEecCHHHH-----------HHhCCEEEEEECCEEE
Confidence 99999 9999999999874 455777777542 567788776 2322 2334467777777765
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=6.9e-23 Score=206.90 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=134.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc----------eeeeeehhhhhhh--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF----------RSGAVEQLRTHAR-- 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~-- 467 (621)
..+|+++||++++|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+..
T Consensus 19 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred eeEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 458999999999999 99999999999999999999999999999999987651 2899999754333
Q ss_pred ----hcccceeecCCCCC-HHHHHHHHHHHHh-hcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 468 ----RLQVPIFEKGYEKD-PAIVAKEAIQEAT-RNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 468 ----~L~v~l~~~~~~~d-~~~ia~~al~~~~-~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
++..... ...... ....+.++++.+. ... .+..+..+||||+||+.||++|+ .+|+++|| ||||+|
T Consensus 97 tv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~lllL-DEPts~ 169 (240)
T 1ji0_A 97 TVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM-----SRPKLLMM-DEPSLG 169 (240)
T ss_dssp BHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT-----TCCSEEEE-ECTTTT
T ss_pred cHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCCccc
Confidence 2222110 011112 2234455666553 444 36678899999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||+..+. .+.+.|..+.+. +.++|++|.- ... +....-.|+++..|+-+
T Consensus 170 LD~~~~~-~l~~~l~~~~~~----g~tvi~vtHd------~~~----~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 170 LAPILVS-EVFEVIQKINQE----GTTILLVEQN------ALG----ALKVAHYGYVLETGQIV 218 (240)
T ss_dssp CCHHHHH-HHHHHHHHHHHT----TCCEEEEESC------HHH----HHHHCSEEEEEETTEEE
T ss_pred CCHHHHH-HHHHHHHHHHHC----CCEEEEEecC------HHH----HHHhCCEEEEEECCEEE
Confidence 9999874 555777777542 5677887752 112 23334478888888765
No 29
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=4.6e-23 Score=219.54 Aligned_cols=183 Identities=18% Similarity=0.174 Sum_probs=136.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|++|||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 28 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 105 (355)
T 1z47_A 28 ARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVY 105 (355)
T ss_dssp TTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHH
T ss_pred CEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHH
Confidence 468999999999999 99999999999999999999999999999999998752 499999976443333
Q ss_pred -ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 -QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 -~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
++.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+.
T Consensus 106 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~~ 179 (355)
T 1z47_A 106 DNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA-----PRPQVLLF-DEPFAAIDTQ 179 (355)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTCCSSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHH
Confidence 1111111112222 2345566666655443 6778899999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|..+.+. .++++|++|. | ...+ ....-.|+++..|+-+
T Consensus 180 ~r~-~l~~~l~~l~~~---~g~tvi~vTH-d-----~~~a----~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 180 IRR-ELRTFVRQVHDE---MGVTSVFVTH-D-----QEEA----LEVADRVLVLHEGNVE 225 (355)
T ss_dssp HHH-HHHHHHHHHHHH---HTCEEEEECS-C-----HHHH----HHHCSEEEEEETTEEE
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEECC-C-----HHHH----HHhCCEEEEEECCEEE
Confidence 874 455667666532 2678888885 2 2222 2334477888887754
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=3.9e-23 Score=210.95 Aligned_cols=182 Identities=16% Similarity=0.157 Sum_probs=133.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc--------eeeeeehhhhhhhhc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF--------RSGAVEQLRTHARRL-- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~--------RigaveQl~~~~~~L-- 469 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|...+...+
T Consensus 28 ~~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 105 (256)
T 1vpl_A 28 KEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 105 (256)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcH
Confidence 468999999999999 99999999999999999999999999999999997752 489999975433322
Q ss_pred --ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 470 --QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 470 --~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
++.+....++... ...+.++++.+.+.++ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~lllL-DEPts~LD~ 179 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM-----VNPRLAIL-DEPTSGLDV 179 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTCCH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccccCH
Confidence 1111111112222 2344556666555443 5667889999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..+. .+.+.|..+.+. +.++|++|.- .. .+....-.|+++..|+-+
T Consensus 180 ~~~~-~l~~~l~~l~~~----g~tiiivtHd------~~----~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 180 LNAR-EVRKILKQASQE----GLTILVSSHN------ML----EVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp HHHH-HHHHHHHHHHHT----TCEEEEEECC------HH----HHTTTCSEEEEEETTEEE
T ss_pred HHHH-HHHHHHHHHHhC----CCEEEEEcCC------HH----HHHHHCCEEEEEECCEEE
Confidence 9874 555777777542 5677777752 11 122334467777777654
No 31
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=8.8e-23 Score=217.74 Aligned_cols=183 Identities=18% Similarity=0.192 Sum_probs=135.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL--- 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L--- 469 (621)
..+|+++||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVF 93 (359)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHH
T ss_pred EEEEeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 458999999999999 99999999999999999999999999999999998752 499999976443333
Q ss_pred -ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 470 -QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 470 -~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
++.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~~ 167 (359)
T 2yyz_A 94 ENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALV-----KQPKVLLF-DEPLSNLDAN 167 (359)
T ss_dssp HHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCcccCCHH
Confidence 1211111111111 1345566666665543 6778899999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|..+.+. .++++|++|. | ...+ ....-.|+++..|+-+
T Consensus 168 ~r~-~l~~~l~~l~~~---~g~tvi~vTH-d-----~~~~----~~~adri~vl~~G~i~ 213 (359)
T 2yyz_A 168 LRM-IMRAEIKHLQQE---LGITSVYVTH-D-----QAEA----MTMASRIAVFNQGKLV 213 (359)
T ss_dssp HHH-HHHHHHHHHHHH---HCCEEEEEES-C-----HHHH----HHHCSEEEEEETTEEE
T ss_pred HHH-HHHHHHHHHHHh---cCCEEEEEcC-C-----HHHH----HHhCCEEEEEECCEEE
Confidence 874 455667666532 2677888885 2 2222 2334477888877654
No 32
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=7.3e-23 Score=218.59 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=135.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|++|||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 93 (362)
T 2it1_A 16 FTALNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVY 93 (362)
T ss_dssp SEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHH
T ss_pred EEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHH
Confidence 458999999999999 99999999999999999999999999999999998762 4999999754433331
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~~ 167 (362)
T 2it1_A 94 KNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV-----KEPEVLLL-DEPLSNLDAL 167 (362)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESGGGGSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECccccCCHH
Confidence 111111112222 2345566776666554 6778899999999999999999 99999999 9999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|+.+.+. .++++|++|. | ... +....-.|+++-.|+-+
T Consensus 168 ~r~-~l~~~l~~l~~~---~g~tvi~vTH-d-----~~~----a~~~adri~vl~~G~i~ 213 (362)
T 2it1_A 168 LRL-EVRAELKRLQKE---LGITTVYVTH-D-----QAE----ALAMADRIAVIREGEIL 213 (362)
T ss_dssp HHH-HHHHHHHHHHHH---HTCEEEEEES-C-----HHH----HHHHCSEEEEEETTEEE
T ss_pred HHH-HHHHHHHHHHHh---CCCEEEEECC-C-----HHH----HHHhCCEEEEEECCEEE
Confidence 874 455667666432 2677888875 2 112 22334467777777654
No 33
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=4.3e-23 Score=219.82 Aligned_cols=181 Identities=17% Similarity=0.145 Sum_probs=134.2
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------------eeeeeehhhhhhhhc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------------RSGAVEQLRTHARRL 469 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------------RigaveQl~~~~~~L 469 (621)
+|++|||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 20 vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 97 (353)
T 1oxx_K 20 ALDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL 97 (353)
T ss_dssp EEEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS
T ss_pred eEeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCC
Confidence 8999999999999 99999999999999999999999999999999986642 389999976443333
Q ss_pred ----ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 470 ----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 470 ----~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++|
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~-----~~P~lLLL-DEP~s~L 171 (353)
T 1oxx_K 98 TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALV-----KDPSLLLL-DEPFSNL 171 (353)
T ss_dssp CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTS
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCcccC
Confidence 1212111122222 2345566666665543 6778899999999999999999 99999999 9999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|+..+. .+.+.|..+.+. .++++|++|. | ... +....-.|+++..|+-+
T Consensus 172 D~~~r~-~l~~~l~~l~~~---~g~tvi~vTH-d-----~~~----~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 172 DARMRD-SARALVKEVQSR---LGVTLLVVSH-D-----PAD----IFAIADRVGVLVKGKLV 220 (353)
T ss_dssp CGGGHH-HHHHHHHHHHHH---HCCEEEEEES-C-----HHH----HHHHCSEEEEEETTEEE
T ss_pred CHHHHH-HHHHHHHHHHHh---cCCEEEEEeC-C-----HHH----HHHhCCEEEEEECCEEE
Confidence 998864 455666666432 2677888875 2 222 22334477788877654
No 34
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=7.9e-23 Score=219.09 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=132.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc--
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ-- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~-- 470 (621)
..+|+++||++.+|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 24 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~ 101 (372)
T 1v43_A 24 FTAVNKLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVY 101 (372)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHH
T ss_pred EEEEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHH
Confidence 458999999999999 99999999999999999999999999999999998752 4999999764443331
Q ss_pred --cceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 471 --VPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 471 --v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
+.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+.
T Consensus 102 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~s~LD~~ 175 (372)
T 1v43_A 102 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV-----VEPDVLLM-DEPLSNLDAK 175 (372)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHT-----TCCSEEEE-ESTTTTSCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-cCCCccCCHH
Confidence 211111112222 2345566666655443 6778899999999999999999 99999999 9999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+. .+.+.|..+.+. .++++|++|. | ... +....-.|+++-.|+-+
T Consensus 176 ~r~-~l~~~l~~l~~~---~g~tvi~vTH-d-----~~~----a~~~adri~vl~~G~i~ 221 (372)
T 1v43_A 176 LRV-AMRAEIKKLQQK---LKVTTIYVTH-D-----QVE----AMTMGDRIAVMNRGQLL 221 (372)
T ss_dssp HHH-HHHHHHHHHHHH---HTCEEEEEES-C-----HHH----HHHHCSEEEEEETTEEE
T ss_pred HHH-HHHHHHHHHHHh---CCCEEEEEeC-C-----HHH----HHHhCCEEEEEECCEEE
Confidence 874 455666666532 2677888875 2 122 22334467777777654
No 35
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.88 E-value=5.1e-23 Score=218.78 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=135.7
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhc-----
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRL----- 469 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L----- 469 (621)
+|+++||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+...+
T Consensus 15 ~l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGE--YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTC--EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCC--EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHH
Confidence 8999999999999 99999999999999999999999999999999998762 499999975443332
Q ss_pred -ccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 470 -QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 470 -~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
...+...+.. .. ..+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||++||+..+.
T Consensus 93 l~~~~~~~~~~-~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~-----~~P~lLLL-DEP~s~LD~~~~~ 164 (348)
T 3d31_A 93 LEFGMRMKKIK-DP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV-----TNPKILLL-DEPLSALDPRTQE 164 (348)
T ss_dssp HHHHHHHHCCC-CH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT-----SCCSEEEE-ESSSTTSCHHHHH
T ss_pred HHHHHHHcCCC-HH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECccccCCHHHHH
Confidence 2221111111 22 455677777766554 6778899999999999999999 99999999 9999999998874
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.|+.+.+. .++++|++|. | ... +....-.|+++..|+-+
T Consensus 165 -~l~~~l~~l~~~---~g~tii~vTH-d-----~~~----~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 165 -NAREMLSVLHKK---NKLTVLHITH-D-----QTE----ARIMADRIAVVMDGKLI 207 (348)
T ss_dssp -HHHHHHHHHHHH---TTCEEEEEES-C-----HHH----HHHHCSEEEEESSSCEE
T ss_pred -HHHHHHHHHHHh---cCCEEEEEeC-C-----HHH----HHHhCCEEEEEECCEEE
Confidence 455677776542 3678888885 2 112 22334467777777654
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.88 E-value=3.3e-23 Score=206.17 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=121.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----ceeeeeehhhhhhhhc----ccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----FRSGAVEQLRTHARRL----QVP 472 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----~RigaveQl~~~~~~L----~v~ 472 (621)
.+|+++||++.+|+ +++|+||||||||||+++|+|+++|+.|+|.+.+.++ .++|+++|...+...+ ++.
T Consensus 23 ~il~~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~ 100 (214)
T 1sgw_A 23 PVLERITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLK 100 (214)
T ss_dssp EEEEEEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred eEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHH
Confidence 68999999999999 9999999999999999999999999999999999775 3589999975433222 111
Q ss_pred eeec--CCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHH
Q 007024 473 IFEK--GYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKF 550 (621)
Q Consensus 473 l~~~--~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f 550 (621)
+... +...+ ...+.++++.+....++..+..+||||+|++.||++|+ .+|+++|| ||||+|||+..+. .+
T Consensus 101 ~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~-----~~p~lllL-DEPts~LD~~~~~-~l 172 (214)
T 1sgw_A 101 AVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLL-----VNAEIYVL-DDPVVAIDEDSKH-KV 172 (214)
T ss_dssp HHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTT-----SCCSEEEE-ESTTTTSCTTTHH-HH
T ss_pred HHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCCcCCCHHHHH-HH
Confidence 1111 11123 34456667766554435667789999999999999999 99999999 9999999998864 45
Q ss_pred HHHHHHhhcCCCCCCceEEEecc
Q 007024 551 NQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 551 ~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+.+..+.+. +.++|++|.
T Consensus 173 ~~~l~~~~~~----g~tiiivtH 191 (214)
T 1sgw_A 173 LKSILEILKE----KGIVIISSR 191 (214)
T ss_dssp HHHHHHHHHH----HSEEEEEES
T ss_pred HHHHHHHHhC----CCEEEEEeC
Confidence 5677776532 456676665
No 37
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=1.1e-22 Score=217.96 Aligned_cols=183 Identities=16% Similarity=0.147 Sum_probs=134.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------------eeeeeehhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------------RSGAVEQLRTHA 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------------RigaveQl~~~~ 466 (621)
..+|++|||++++|+ +++|+|||||||||||++|+|++.|++|+|.+.+.++. ++|+++|...+.
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~ 93 (372)
T 1g29_1 16 VTAVREMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93 (372)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCC
T ss_pred EEEEeeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccC
Confidence 458999999999999 99999999999999999999999999999999987642 389999975443
Q ss_pred hhc----ccceeecCCCCCH---HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 467 RRL----QVPIFEKGYEKDP---AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 467 ~~L----~v~l~~~~~~~d~---~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
..+ ++.+....++... ...+.++++.+.+.++ +..+..+||||+||++|||+|+ .+|+++|| ||||
T Consensus 94 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~-----~~P~lLLL-DEP~ 167 (372)
T 1g29_1 94 PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV-----RKPQVFLM-DEPL 167 (372)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH-----TCCSEEEE-ECTT
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-CCCC
Confidence 333 1111111112222 2345566776665544 6778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
++||+..+. .+.+.|+.+.+. .++++|++|.- ...+ ....-.|+++-.|+-+
T Consensus 168 s~LD~~~r~-~l~~~l~~l~~~---~g~tvi~vTHd------~~~a----~~~adri~vl~~G~i~ 219 (372)
T 1g29_1 168 SNLDAKLRV-RMRAELKKLQRQ---LGVTTIYVTHD------QVEA----MTMGDRIAVMNRGVLQ 219 (372)
T ss_dssp TTSCHHHHH-HHHHHHHHHHHH---HTCEEEEEESC------HHHH----HHHCSEEEEEETTEEE
T ss_pred ccCCHHHHH-HHHHHHHHHHHh---cCCEEEEECCC------HHHH----HHhCCEEEEEeCCEEE
Confidence 999998874 444666666532 26778888852 1122 2333467777777654
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.88 E-value=1.5e-22 Score=207.48 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=122.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------ceeeeeehhh-hh------h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLR-TH------A 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------~RigaveQl~-~~------~ 466 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|+++|.. .. .
T Consensus 20 ~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 458999999999999 9999999999999999999999999999999999875 2489999974 22 2
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhhc--C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
+++................+.++++.+++. + .+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+
T Consensus 98 enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~-----~~p~lllL-DEPts~LD~ 171 (266)
T 2yz2_A 98 DEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV-----HEPDILIL-DEPLVGLDR 171 (266)
T ss_dssp HHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-ESTTTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-cCccccCCH
Confidence 222211100001112234456677766654 3 36677899999999999999999 99999999 999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 544 VDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 544 ~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+. .+.+.|..+.+. +.++|++|.
T Consensus 172 ~~~~-~l~~~l~~l~~~----g~tii~vtH 196 (266)
T 2yz2_A 172 EGKT-DLLRIVEKWKTL----GKTVILISH 196 (266)
T ss_dssp HHHH-HHHHHHHHHHHT----TCEEEEECS
T ss_pred HHHH-HHHHHHHHHHHc----CCEEEEEeC
Confidence 8874 455777777542 567788776
No 39
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.88 E-value=8.5e-23 Score=210.92 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=128.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-----------eeeeeehhhhh---
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-----------RSGAVEQLRTH--- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-----------RigaveQl~~~--- 465 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+.++. ++|+++|....
T Consensus 34 ~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (279)
T 2ihy_A 34 KTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ 111 (279)
T ss_dssp EEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC
T ss_pred EEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC
Confidence 458999999999999 99999999999999999999999999999999987653 38999997532
Q ss_pred -----hhhcccceee--cCCC-CCH--HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 -----ARRLQVPIFE--KGYE-KDP--AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 -----~~~L~v~l~~--~~~~-~d~--~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+++...... ..++ ... ...+.++++.+...+ .+..+..+||||+||+.||++|+ .+|+++||
T Consensus 112 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lLlL- 185 (279)
T 2ihy_A 112 EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM-----GQPQVLIL- 185 (279)
T ss_dssp TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TCCSEEEE-
T ss_pred CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh-----CCCCEEEE-
Confidence 2222221110 0011 111 233455566555443 36678899999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceE--EEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG--ILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~--IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.+. +.++ |++|. ++.+ ....-.|+++..|+-+
T Consensus 186 DEPts~LD~~~~~-~l~~~l~~l~~~----g~tv~~iivtHd~~~~-----------~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 186 DEPAAGLDFIARE-SLLSILDSLSDS----YPTLAMIYVTHFIEEI-----------TANFSKILLLKDGQSI 242 (279)
T ss_dssp ESTTTTCCHHHHH-HHHHHHHHHHHH----CTTCEEEEEESCGGGC-----------CTTCCEEEEEETTEEE
T ss_pred eCCccccCHHHHH-HHHHHHHHHHHC----CCEEEEEEEecCHHHH-----------HHhCCEEEEEECCEEE
Confidence 9999999999874 555777777543 3445 66665 2332 1222356666666654
No 40
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.88 E-value=8e-23 Score=206.69 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=130.7
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc-------eeeeeehhhhhhhhcc----
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF-------RSGAVEQLRTHARRLQ---- 470 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~-------RigaveQl~~~~~~L~---- 470 (621)
+|++|||++++ + +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+...+.
T Consensus 14 ~l~~isl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-D--YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-S--EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-E--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 48999999999 9 99999999999999999999999999999999997752 4899999754333221
Q ss_pred cceeecCCCCC-HHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 471 VPIFEKGYEKD-PAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 471 v~l~~~~~~~d-~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
+.+....++.. ....+.++++.+...++ +..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-----~~p~lllL-DEPts~LD~~~~~- 163 (240)
T 2onk_A 91 IAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALV-----IQPRLLLL-DEPLSAVDLKTKG- 163 (240)
T ss_dssp HHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHT-----TCCSSBEE-ESTTSSCCHHHHH-
T ss_pred HHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHHH-
Confidence 11111111111 12334555665555443 6677899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.+..+.+. .+.++|++|.- ... +....-.|+++..|+-+
T Consensus 164 ~~~~~l~~l~~~---~g~tvi~vtHd------~~~----~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 164 VLMEELRFVQRE---FDVPILHVTHD------LIE----AAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHHHHHHHH---HTCCEEEEESC------HHH----HHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHh---cCCEEEEEeCC------HHH----HHHhCCEEEEEECCEEE
Confidence 455777777532 25667887752 112 23334477888888754
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.87 E-value=4.4e-22 Score=202.36 Aligned_cols=178 Identities=16% Similarity=0.145 Sum_probs=131.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhhhhcc-
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHARRLQ- 470 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~~~L~- 470 (621)
.+|+++||++.+|+ +++|+||||||||||++.|+|+++|+ |+|.+.+.++. ++|+++|...+...+.
T Consensus 14 ~vl~~vsl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE--ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47999999999999 99999999999999999999999999 99999997752 3899999654332221
Q ss_pred ---cceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCc-------EEEEEeCCcC
Q 007024 471 ---VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD-------LVLFVGEALV 539 (621)
Q Consensus 471 ---v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd-------lILLVDEpt~ 539 (621)
+.+.. ..... ...+.++++.+...++ +..+..+||||+||+.||++|+ .+|+ ++|| ||||+
T Consensus 91 ~e~l~~~~-~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~~~~~~~~lllL-DEPts 162 (249)
T 2qi9_C 91 WHYLTLHQ-HDKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL-----QITPQANPAGQLLLL-DEPMN 162 (249)
T ss_dssp HHHHHTTC-SSTTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----HHCTTTCTTCCEEEE-SSTTT
T ss_pred HHHHHHhh-ccCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH-----cCCCcCCCCCeEEEE-ECCcc
Confidence 11111 11112 3445566666655443 6677889999999999999999 8999 9998 99999
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 540 GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 540 GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
|||+..+. .+.+.|..+.+. +.++|++|. | .. .+....-.|+++..|+-+
T Consensus 163 ~LD~~~~~-~l~~~l~~l~~~----g~tviivtH-d-----~~----~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 163 SLDVAQQS-ALDKILSALSQQ----GLAIVMSSH-D-----LN----HTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TCCHHHHH-HHHHHHHHHHHT----TCEEEEECS-C-----HH----HHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC-C-----HH----HHHHhCCEEEEEECCEEE
Confidence 99999874 555777777542 567788775 1 11 233344577888888765
No 42
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=6.6e-22 Score=201.44 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=129.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh------hhcccce
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA------RRLQVPI 473 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~------~~L~v~l 473 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|+++|++|+|.+. .++|+++|...+. +++....
T Consensus 18 ~~vl~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp TEEEEEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred CeEEEEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 458999999999999 999999999999999999999999999999832 3589999965433 2222211
Q ss_pred eec-C-C-CCCH--HHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 474 FEK-G-Y-EKDP--AIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 474 ~~~-~-~-~~d~--~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
... + + .... ...+.++++.+...+ .+..+..+||||+|++.||++|+ .+|+++|| ||||+|||+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~-----~~p~lllL-DEPts~LD~~~~~ 165 (253)
T 2nq2_C 92 STHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA-----SECKLILL-DEPTSALDLANQD 165 (253)
T ss_dssp GGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH-----TTCSEEEE-SSSSTTSCHHHHH
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCcccCCHHHHH
Confidence 100 1 0 0111 234556666655443 35677899999999999999999 99999999 9999999999874
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
.+.+.+..+.+. .+.++|++|. | ... +....-.|+++..|+ +
T Consensus 166 -~l~~~l~~l~~~---~g~tvi~vtH-d-----~~~----~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 166 -IVLSLLIDLAQS---QNMTVVFTTH-Q-----PNQ----VVAIANKTLLLNKQN-F 207 (253)
T ss_dssp -HHHHHHHHHHHT---SCCEEEEEES-C-----HHH----HHHHCSEEEEEETTE-E
T ss_pred -HHHHHHHHHHHh---cCCEEEEEec-C-----HHH----HHHhCCEEEEEeCCe-E
Confidence 555777777543 2567777775 1 212 333345788888888 6
No 43
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.86 E-value=4.4e-22 Score=201.97 Aligned_cols=175 Identities=18% Similarity=0.191 Sum_probs=126.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|++|||++++|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+.
T Consensus 22 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 99 (247)
T 2ff7_A 22 PVILDNINLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSI 99 (247)
T ss_dssp CEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBH
T ss_pred cceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccH
Confidence 468999999999999 99999999999999999999999999999999997752 389999975432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhcC------------CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRNG------------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~------------~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++... .. .... ..+.++++.+.... .+.....+||||+||+.|||+|+ .+|+++||
T Consensus 100 ~enl~~~--~~--~~~~-~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~-----~~p~lllL 169 (247)
T 2ff7_A 100 IDNISLA--NP--GMSV-EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV-----NNPKILIF 169 (247)
T ss_dssp HHHHTTT--CT--TCCH-HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT-----TCCSEEEE
T ss_pred HHHHhcc--CC--CCCH-HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 222211 11 1122 22334444332211 12234689999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.. +.++|++|. |.. .+.. .-.|+++..|+-+
T Consensus 170 -DEPts~LD~~~~~-~i~~~l~~~~~-----g~tviivtH-~~~---------~~~~-~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 170 -DEATSALDYESEH-VIMRNMHKICK-----GRTVIIIAH-RLS---------TVKN-ADRIIVMEKGKIV 222 (247)
T ss_dssp -CCCCSCCCHHHHH-HHHHHHHHHHT-----TSEEEEECS-SGG---------GGTT-SSEEEEEETTEEE
T ss_pred -eCCcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEeC-CHH---------HHHh-CCEEEEEECCEEE
Confidence 9999999999874 45577777632 567888886 211 1111 3467788888765
No 44
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.85 E-value=1.8e-21 Score=200.13 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=126.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+
T Consensus 32 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109 (271)
T ss_dssp SCCEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBH
T ss_pred ceeeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccH
Confidence 468999999999999 99999999999999999999999999999999997752 38999996533
Q ss_pred hhhcccceeecCCCCCHHHH--------HHHHHHHH--hhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIV--------AKEAIQEA--TRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~i--------a~~al~~~--~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
.+++.... ..+. ....+ +.+.++.+ .... .+..+..+||||+||+.|||+|+ .+|+++||
T Consensus 110 ~enl~~~~--~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p~lllL- 180 (271)
T 2ixe_A 110 RENIAYGL--TRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI-----RKPRLLIL- 180 (271)
T ss_dssp HHHHHTTC--SSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT-----TCCSEEEE-
T ss_pred HHHHhhhc--ccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh-----cCCCEEEE-
Confidence 22322211 1111 11111 11122222 1222 25567789999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.. ..+.++|++|.- .. .+.. .-.|+++..|+-+
T Consensus 181 DEPts~LD~~~~~-~i~~~l~~~~~---~~g~tviivtHd------~~----~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 181 DNATSALDAGNQL-RVQRLLYESPE---WASRTVLLITQQ------LS----LAER-AHHILFLKEGSVC 235 (271)
T ss_dssp ESTTTTCCHHHHH-HHHHHHHHCTT---TTTSEEEEECSC------HH----HHTT-CSEEEEEETTEEE
T ss_pred ECCccCCCHHHHH-HHHHHHHHHHh---hcCCEEEEEeCC------HH----HHHh-CCEEEEEECCEEE
Confidence 9999999999874 44466665543 236778888752 11 1222 4468888888765
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.4e-21 Score=200.30 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc------eee-eeehhhhh----hhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF------RSG-AVEQLRTH----ARR 468 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~------Rig-aveQl~~~----~~~ 468 (621)
..+|+++||++. |+ +++|+||||||||||+++|+|++ |++|+|.+.+.++. ++| +++|...+ .++
T Consensus 18 ~~il~~vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~en 93 (263)
T 2pjz_A 18 RFSLENINLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDI 93 (263)
T ss_dssp EEEEEEEEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHH
T ss_pred ceeEEeeeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHH
Confidence 458999999999 99 99999999999999999999999 99999999997653 588 99997644 222
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 469 LQVPIFEKGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 469 L~v~l~~~~~~~d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+. +....+... ...+.++++.+... . .+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+
T Consensus 94 l~--~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL-DEPts~LD~~~~ 164 (263)
T 2pjz_A 94 VY--LYEELKGLD-RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA-----SQPEIVGL-DEPFENVDAARR 164 (263)
T ss_dssp HH--HHHHHTCCC-HHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH-----TCCSEEEE-ECTTTTCCHHHH
T ss_pred HH--HhhhhcchH-HHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCccccCHHHH
Confidence 21 111111122 23455666666554 3 25667889999999999999999 99999999 999999999887
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
. .+.+.|..+.. ++|++|.
T Consensus 165 ~-~l~~~L~~~~~-------tviivtH 183 (263)
T 2pjz_A 165 H-VISRYIKEYGK-------EGILVTH 183 (263)
T ss_dssp H-HHHHHHHHSCS-------EEEEEES
T ss_pred H-HHHHHHHHhcC-------cEEEEEc
Confidence 4 44456655532 6777775
No 46
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.85 E-value=6.1e-22 Score=201.11 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=124.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccc----------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~ 467 (621)
..+|++|||++.+|+ +++|+||||||||||++.|+|+ +.|++|+|.+.+.++. ++++++|...+..
T Consensus 16 ~~vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 16 ETILKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred EEEEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 468999999999999 9999999999999999999998 7899999999998752 2678888654332
Q ss_pred h------cccceee-cCCCCCH---HHHHHHHHHHHhh-cC-CCccccc-cchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 468 R------LQVPIFE-KGYEKDP---AIVAKEAIQEATR-NG-SDVVLVD-TAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 468 ~------L~v~l~~-~~~~~d~---~~ia~~al~~~~~-~~-~d~vliD-tSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
. +...... ....... ...+.++++.+.. .+ .+..+.. +||||+||+.||++|+ .+|+++||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~-----~~p~lllL- 167 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV-----LEPTYAVL- 167 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH-----HCCSEEEE-
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 2 2111100 0111111 2334555665555 23 2556667 9999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHh-CCcEEEEecCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVS-GAPVMFVGCGQSY 604 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~-g~PI~fvg~Gq~v 604 (621)
||||+|||+..+. .+.+.|..+.+ .+.++|++|. |.. .+... .-.|+++..|+-+
T Consensus 168 DEPts~LD~~~~~-~l~~~l~~l~~----~g~tvi~vtH-d~~---------~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 168 DETDSGLDIDALK-VVARGVNAMRG----PNFGALVITH-YQR---------ILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp ECGGGTTCHHHHH-HHHHHHHHHCS----TTCEEEEECS-SSG---------GGGTSCCSEEEEEETTEEE
T ss_pred eCCCcCCCHHHHH-HHHHHHHHHHh----cCCEEEEEec-CHH---------HHHHhcCCEEEEEECCEEE
Confidence 9999999999874 44467777643 2677888886 211 11222 2367777777765
No 47
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.85 E-value=1e-21 Score=198.67 Aligned_cols=177 Identities=17% Similarity=0.210 Sum_probs=129.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++|||++++|+ +++|+||||||||||+++|+|++.|++|+|.+.+.++. ++|+++|...+
T Consensus 15 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv 92 (243)
T 1mv5_A 15 EQILRDISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTI 92 (243)
T ss_dssp SCSEEEEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEH
T ss_pred CceEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccH
Confidence 458999999999999 99999999999999999999999999999999987651 38999986533
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhhcCC-C-----------ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-D-----------VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d-----------~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.... . ..... ..+.++++.+...++ + .....+||||+||+.|||+|+ .+|+++||
T Consensus 93 ~enl~~~~--~-~~~~~-~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~-----~~p~lllL 163 (243)
T 1mv5_A 93 RENLTYGL--E-GDYTD-EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL-----RNPKILML 163 (243)
T ss_dssp HHHTTSCT--T-SCSCH-HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhhhc--c-CCCCH-HHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 22222210 0 11122 234455555544332 1 224579999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+|||+..+. .+.+.|..+. . +.++|++|. | ... +. ..-.|+++..|+-+.
T Consensus 164 -DEPts~LD~~~~~-~i~~~l~~~~-~----~~tvi~vtH-~-----~~~----~~-~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 164 -DEATASLDSESES-MVQKALDSLM-K----GRTTLVIAH-R-----LST----IV-DADKIYFIEKGQITG 217 (243)
T ss_dssp -ECCSCSSCSSSCC-HHHHHHHHHH-T----TSEEEEECC-S-----HHH----HH-HCSEEEEEETTEECC
T ss_pred -ECCcccCCHHHHH-HHHHHHHHhc-C----CCEEEEEeC-C-----hHH----HH-hCCEEEEEECCEEEE
Confidence 9999999998764 4456776664 2 567888875 2 111 22 245788899998663
No 48
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.84 E-value=3e-21 Score=198.02 Aligned_cols=161 Identities=19% Similarity=0.139 Sum_probs=117.1
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh--HhhcCcEEEEcccccc----------eeeeeehhhhhhh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQHKVSVMMAACDTF----------RSGAVEQLRTHAR 467 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~~~GkV~I~~~Dt~----------RigaveQl~~~~~ 467 (621)
..+|++|||++.+|+ +++|+||||||||||+++|+|+ +.|+.|+|.+.+.++. ++|+++|...+..
T Consensus 33 ~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~ 110 (267)
T 2zu0_C 33 KAILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIP 110 (267)
T ss_dssp EEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccc
Confidence 468999999999999 9999999999999999999998 4689999999998752 2789998754322
Q ss_pred hc------ccce--ee--cCC-CCCH---HHHHHHHHHHHhhc-CC-Ccccc-ccchhHHhHHHHHHHHHhhhhcCCCcE
Q 007024 468 RL------QVPI--FE--KGY-EKDP---AIVAKEAIQEATRN-GS-DVVLV-DTAGRMQDNEPLMRALSKLIYLNNPDL 530 (621)
Q Consensus 468 ~L------~v~l--~~--~~~-~~d~---~~ia~~al~~~~~~-~~-d~vli-DtSGg~qqr~~LaraL~~l~~~~~Pdl 530 (621)
.+ .... .. .+. .... ...+.++++.+... .+ +..+. .+||||+||+.||++|+ .+|++
T Consensus 111 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~-----~~p~l 185 (267)
T 2zu0_C 111 GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV-----LEPEL 185 (267)
T ss_dssp TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH-----HCCSE
T ss_pred cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH-----hCCCE
Confidence 21 1111 00 010 1111 23445566665553 22 44554 59999999999999999 99999
Q ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 531 VLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 531 ILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+|| ||||+|||+..+. .+.+.|..+.+ .+.++|++|.
T Consensus 186 LlL-DEPts~LD~~~~~-~l~~~l~~l~~----~g~tviivtH 222 (267)
T 2zu0_C 186 CIL-DESDSGLDIDALK-VVADGVNSLRD----GKRSFIIVTH 222 (267)
T ss_dssp EEE-ESTTTTCCHHHHH-HHHHHHHTTCC----SSCEEEEECS
T ss_pred EEE-eCCCCCCCHHHHH-HHHHHHHHHHh----cCCEEEEEee
Confidence 999 9999999999874 44456655532 2677888886
No 49
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.84 E-value=1.8e-21 Score=203.57 Aligned_cols=176 Identities=18% Similarity=0.197 Sum_probs=126.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|++|||.+++|+ +++||||||||||||+++|+|++.|+.|+|.+.|.|+. ++|+++|...+
T Consensus 67 ~~vL~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv 144 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144 (306)
T ss_dssp CEEEEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEH
T ss_pred CceeeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccH
Confidence 468999999999999 99999999999999999999999999999999998862 39999997633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhhc--------CCC----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--------~~d----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.+.. . .... ..+.++++.+... +++ .....+|||++||+.|||+|. .+|+++||
T Consensus 145 ~eNi~~~~--~--~~~~-~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~-----~~p~iLlL 214 (306)
T 3nh6_A 145 ADNIRYGR--V--TAGN-DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL-----KAPGIILL 214 (306)
T ss_dssp HHHHHTTS--T--TCCH-HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHHhhc--c--cCCH-HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 22222111 0 1111 1222333322111 222 223578999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||++||+.... .+.+.|..+.. +.++|++|. .... +.. .-.|+++-.|+-+.
T Consensus 215 -DEPts~LD~~~~~-~i~~~l~~l~~-----~~Tvi~itH------~l~~----~~~-aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 215 -DEATSALDTSNER-AIQASLAKVCA-----NRTTIVVAH------RLST----VVN-ADQILVIKDGCIVE 268 (306)
T ss_dssp -ECCSSCCCHHHHH-HHHHHHHHHHT-----TSEEEEECC------SHHH----HHT-CSEEEEEETTEEEE
T ss_pred -ECCcccCCHHHHH-HHHHHHHHHcC-----CCEEEEEEc------ChHH----HHc-CCEEEEEECCEEEE
Confidence 9999999999875 44467776653 357777774 2222 222 45788888888763
No 50
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=192.00 Aligned_cols=176 Identities=18% Similarity=0.108 Sum_probs=119.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhccccee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~ 474 (621)
..+|+++||++.+|+ +++|+||||||||||++.|+|++.|++|+|.+.+ ++|+++|...+ .+++....
T Consensus 18 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~~~~tv~enl~~~~- 90 (237)
T 2cbz_A 18 PPTLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWIQNDSLRENILFGC- 90 (237)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCCCSEEHHHHHHTTS-
T ss_pred CceeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcCCCcCHHHHhhCcc-
Confidence 468999999999999 9999999999999999999999999999999988 58999997532 22222111
Q ss_pred ecCCCCCHHHHHHHHHH---HHhhcC------CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 475 EKGYEKDPAIVAKEAIQ---EATRNG------SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~---~~~~~~------~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
.+.......+.++.. .+.... .+.....+||||+||+.|||+|+ .+|+++|| ||||+|||+..
T Consensus 91 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL-DEPts~LD~~~ 162 (237)
T 2cbz_A 91 --QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY-----SNADIYLF-DDPLSAVDAHV 162 (237)
T ss_dssp --CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH-----HCCSEEEE-ESTTTTSCHHH
T ss_pred --ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE-eCcccccCHHH
Confidence 111222111112111 111111 23456789999999999999999 99999999 99999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+...+ +.+..+... . .+.++|++|.- .. . +. ..-.|+++..|+-+
T Consensus 163 ~~~i~-~~l~~~~~~-~-~~~tviivtH~-~~-----~----~~-~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 163 GKHIF-ENVIGPKGM-L-KNKTRILVTHS-MS-----Y----LP-QVDVIIVMSGGKIS 207 (237)
T ss_dssp HHHHH-HHTTSTTST-T-TTSEEEEECSC-ST-----T----GG-GSSEEEEEETTEEE
T ss_pred HHHHH-HHHHHHHhh-c-CCCEEEEEecC-hH-----H----HH-hCCEEEEEeCCEEE
Confidence 64222 333111111 1 26778888862 11 1 11 13367778777654
No 51
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.84 E-value=4.1e-21 Score=196.29 Aligned_cols=174 Identities=16% Similarity=0.154 Sum_probs=123.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|++|||++++|+ +++|+||||||||||+++|+|++.+ .|+|.+.+.++. ++|+++|...+.
T Consensus 33 ~~vl~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 109 (260)
T 2ghi_A 33 HRTLKSINFFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109 (260)
T ss_dssp SCSEEEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEH
T ss_pred CceeEeeEEEECCCC--EEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCH
Confidence 358999999999999 9999999999999999999999987 799999997752 389999975332
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhc----C----C----CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRN----G----S----DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~----~----~----d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++.... ..... ..+.++++.+... . + +.....+||||+||+.|||+|+ .+|+++||
T Consensus 110 ~enl~~~~----~~~~~-~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~-----~~p~lllL 179 (260)
T 2ghi_A 110 KYNILYGK----LDATD-EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL-----KDPKIVIF 179 (260)
T ss_dssp HHHHHTTC----TTCCH-HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhccC----CCCCH-HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 2222111 11122 2223333332211 0 1 1235689999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+|||+..+ ..+.+.|..+.. +.++|++|.--. . +. ..-.|+++..|+-+
T Consensus 180 -DEPts~LD~~~~-~~i~~~l~~l~~-----~~tviivtH~~~------~----~~-~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 180 -DEATSSLDSKTE-YLFQKAVEDLRK-----NRTLIIIAHRLS------T----IS-SAESIILLNKGKIV 232 (260)
T ss_dssp -ECCCCTTCHHHH-HHHHHHHHHHTT-----TSEEEEECSSGG------G----ST-TCSEEEEEETTEEE
T ss_pred -ECccccCCHHHH-HHHHHHHHHhcC-----CCEEEEEcCCHH------H----HH-hCCEEEEEECCEEE
Confidence 999999999986 455577777642 467788776211 1 11 13367778888765
No 52
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=207.49 Aligned_cols=174 Identities=14% Similarity=0.050 Sum_probs=124.4
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh---
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA--- 466 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~--- 466 (621)
...+|++|||++.+|+ +++|+|||||||||||++|+|++. ++|+|.+.+.|+. ++|+++|...+.
T Consensus 33 ~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~t 109 (390)
T 3gd7_A 33 GNAILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGT 109 (390)
T ss_dssp SCCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEE
T ss_pred CeEEeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccC
Confidence 4568999999999999 999999999999999999999988 8999999998762 389999976432
Q ss_pred --hhcccceeecCCCCCHHHHHHHHHHHHhhcCC-Cccccc-----------cchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 467 --RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVD-----------TAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 467 --~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliD-----------tSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
+++. ++ .......+.++++.+.+.++ +..+.. +||||+||++|||+|+ .+|+++|
T Consensus 110 v~enl~--~~----~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~-----~~P~lLL 178 (390)
T 3gd7_A 110 FRKNLD--PN----AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL-----SKAKILL 178 (390)
T ss_dssp HHHHHC--TT----CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH-----TTCCEEE
T ss_pred HHHHhh--hc----cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh-----cCCCEEE
Confidence 2221 11 11122334455555443322 333333 8999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||++||+..+. .+.+.|..+. .+.+.|++|.-.+. +. ..-.|+.+-.|+-+
T Consensus 179 L-DEPts~LD~~~~~-~l~~~l~~~~-----~~~tvi~vtHd~e~-------~~----~aDri~vl~~G~i~ 232 (390)
T 3gd7_A 179 L-DEPSAHLDPVTYQ-IIRRTLKQAF-----ADCTVILCEARIEA-------ML----ECDQFLVIEENKVR 232 (390)
T ss_dssp E-ESHHHHSCHHHHH-HHHHHHHTTT-----TTSCEEEECSSSGG-------GT----TCSEEEEEETTEEE
T ss_pred E-eCCccCCCHHHHH-HHHHHHHHHh-----CCCEEEEEEcCHHH-------HH----hCCEEEEEECCEEE
Confidence 9 9999999998764 3445554432 25678888863221 11 13466666666654
No 53
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=6.6e-21 Score=191.08 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=117.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhccccee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIF 474 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~ 474 (621)
..+|+++||++++|+ +++|+||||||||||++.|+|+++|++|+|.+.+ ++|+++|...+ .+++....
T Consensus 21 ~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~~~~~tv~enl~~~~- 93 (229)
T 2pze_A 21 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSWIMPGTIKENIIFGV- 93 (229)
T ss_dssp CCSEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCCCCSBCHHHHHHTTS-
T ss_pred ceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCcccCCCHHHHhhccC-
Confidence 468999999999999 9999999999999999999999999999999987 68999986533 22222111
Q ss_pred ecCCCCCHHHHHHHHHHHHhh----cCC--------CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 475 EKGYEKDPAIVAKEAIQEATR----NGS--------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~----~~~--------d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
..... ...++++.... ..+ +.....+||||+||+.|||+|+ .+|+++|| ||||+|||
T Consensus 94 ----~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~-----~~p~lllL-DEPts~LD 162 (229)
T 2pze_A 94 ----SYDEY-RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLD 162 (229)
T ss_dssp ----CCCHH-HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTSC
T ss_pred ----CcChH-HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh-----cCCCEEEE-ECcccCCC
Confidence 11111 11122221111 001 1123689999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+... +..+..... .+.++|++|.- ... +.. .-.|+++..|+-+
T Consensus 163 ~~~~~~i----~~~l~~~~~-~~~tvi~vtH~------~~~----~~~-~d~v~~l~~G~i~ 208 (229)
T 2pze_A 163 VLTEKEI----FESCVCKLM-ANKTRILVTSK------MEH----LKK-ADKILILHEGSSY 208 (229)
T ss_dssp HHHHHHH----HHHCCCCCT-TTSEEEEECCC------HHH----HHH-CSEEEEEETTEEE
T ss_pred HHHHHHH----HHHHHHHhh-CCCEEEEEcCC------hHH----HHh-CCEEEEEECCEEE
Confidence 9887422 222221112 25678887751 111 222 4468888888765
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.80 E-value=4.4e-20 Score=191.63 Aligned_cols=170 Identities=17% Similarity=0.170 Sum_probs=116.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh-----hhccccee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA-----RRLQVPIF 474 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~-----~~L~v~l~ 474 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+|++.|++|+|.+.+ ++|+++|...+. +++.
T Consensus 51 ~~vl~~isl~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~~~tv~enl~---- 120 (290)
T 2bbs_A 51 TPVLKDINFKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWIMPGTIKENII---- 120 (290)
T ss_dssp CCSEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCCCSSBHHHHHH----
T ss_pred ceEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCccCcccHHHHhh----
Confidence 458999999999999 9999999999999999999999999999999987 689999965332 2221
Q ss_pred ecCCCCCHHHHHHHHHHHHhh----cCC--------CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC
Q 007024 475 EKGYEKDPAIVAKEAIQEATR----NGS--------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND 542 (621)
Q Consensus 475 ~~~~~~d~~~ia~~al~~~~~----~~~--------d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD 542 (621)
+...... ...++++.... ..+ +.....+||||+||+.|||+|+ .+|+++|| ||||+|||
T Consensus 121 --~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~-----~~p~lllL-DEPts~LD 191 (290)
T 2bbs_A 121 --GVSYDEY-RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY-----KDADLYLL-DSPFGYLD 191 (290)
T ss_dssp --TTCCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCC
T ss_pred --CcccchH-HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHH-----CCCCEEEE-ECCcccCC
Confidence 1111111 11122221111 011 1123589999999999999999 99999999 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
+..+...+ ..+..... .+.++|++|.- ... +.. .-.|+++..|+-+
T Consensus 192 ~~~~~~i~----~~ll~~~~-~~~tviivtHd------~~~----~~~-~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 192 VLTEKEIF----ESCVCKLM-ANKTRILVTSK------MEH----LKK-ADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHH----HHCCCCCT-TTSEEEEECCC------HHH----HHH-SSEEEEEETTEEE
T ss_pred HHHHHHHH----HHHHHHhh-CCCEEEEEecC------HHH----HHc-CCEEEEEECCeEE
Confidence 98874222 22221112 26778887751 211 122 4468888888765
No 55
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.79 E-value=2e-19 Score=203.30 Aligned_cols=176 Identities=18% Similarity=0.168 Sum_probs=127.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA---- 466 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~---- 466 (621)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+.
T Consensus 356 ~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433 (582)
T ss_pred ccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccH
Confidence 468999999999999 99999999999999999999999999999999998752 499999976432
Q ss_pred -hhcccceeecCCCCCHHHHHHHHHHHHhhc--------CCCc----cccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 467 -RRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 467 -~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--------~~d~----vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
+++. +... ...+ .+.+.++++.+... +++. ....+||||+||+.|||+|. .+|+++||
T Consensus 434 ~eni~--~~~~-~~~~-~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~-----~~p~illl 504 (582)
T 3b5x_A 434 ANNIA--YAAE-GEYT-REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL-----RDAPVLIL 504 (582)
T ss_pred HHHHh--ccCC-CCCC-HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 3322 2110 1112 22234444443221 2222 23578999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+.+..+.+ +.+.|++|.- ... +. ..-.|+++..|+-+
T Consensus 505 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~tvi~itH~------~~~----~~-~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 505 -DEATSALDTESER-AIQAALDELQK-----NKTVLVIAHR------LST----IE-QADEILVVDEGEII 557 (582)
T ss_pred -ECccccCCHHHHH-HHHHHHHHHcC-----CCEEEEEecC------HHH----HH-hCCEEEEEECCEEE
Confidence 9999999999864 45566666542 5677887751 111 11 23467888888765
No 56
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.78 E-value=2e-19 Score=203.79 Aligned_cols=177 Identities=20% Similarity=0.233 Sum_probs=127.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+
T Consensus 357 ~~vl~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv 434 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSI 434 (595)
T ss_dssp SEEEEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBH
T ss_pred CccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCH
Confidence 358999999999999 99999999999999999999999999999999998762 48999997633
Q ss_pred hhhcccceeecCC-CCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 466 ARRLQVPIFEKGY-EKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 466 ~~~L~v~l~~~~~-~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
.+++.... ..+ ..+. +.+.++++.+.. .+++..+ ..+||||+||+.|||+|. .+|+++|
T Consensus 435 ~eni~~~~--~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~-----~~p~ill 506 (595)
T 2yl4_A 435 AENIAYGA--DDPSSVTA-EEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL-----KNPKILL 506 (595)
T ss_dssp HHHHHTTS--SSTTTSCH-HHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH-----HCCSEEE
T ss_pred HHHHhhcC--CCccccCH-HHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH-----cCCCEEE
Confidence 33332211 110 1222 333445544322 1233333 689999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
| ||||++||+... ..+.+.+..+.+ +.+.|++|. +... +. ..-.|+++..|+-+
T Consensus 507 l-DEpts~LD~~~~-~~i~~~l~~~~~-----~~tvi~itH------~~~~----~~-~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 507 L-DEATSALDAENE-YLVQEALDRLMD-----GRTVLVIAH------RLST----IK-NANMVAVLDQGKIT 560 (595)
T ss_dssp E-ECCCSSCCHHHH-HHHHHHHHHHHT-----TSEEEEECC------CHHH----HH-HSSEEEEEETTEEE
T ss_pred E-ECcccCCCHHHH-HHHHHHHHHHhc-----CCEEEEEec------CHHH----HH-cCCEEEEEECCEEE
Confidence 9 999999999976 455577777653 457788775 2211 11 23467777777654
No 57
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.78 E-value=1.7e-19 Score=203.67 Aligned_cols=176 Identities=20% Similarity=0.258 Sum_probs=126.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|+||++++|+ +++|+|||||||||+++.|+|++.|++|+|.+.|.|+. ++|+++|...+
T Consensus 354 ~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv 431 (578)
T 4a82_A 354 APILKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431 (578)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CcceeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccH
Confidence 458999999999999 99999999999999999999999999999999998863 49999997533
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCc----cccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~----vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++... . ...... ...++++.+.. .+++. ....+||||+||+.|||+|. .+|+++||
T Consensus 432 ~eni~~~--~--~~~~~~-~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~-----~~p~illl 501 (578)
T 4a82_A 432 KENILLG--R--PTATDE-EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL-----NNPPILIL 501 (578)
T ss_dssp HHHHGGG--C--SSCCHH-HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhcC--C--CCCCHH-HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 3333221 1 111222 22333333211 12222 23468999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+... ..+.+.+..+.+ +.+.+++|+--. . + ...-.|+.+..|+-+.
T Consensus 502 -DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~itH~l~------~----~-~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 502 -DEATSALDLESE-SIIQEALDVLSK-----DRTTLIVAHRLS------T----I-THADKIVVIENGHIVE 555 (578)
T ss_dssp -ESTTTTCCHHHH-HHHHHHHHHHTT-----TSEEEEECSSGG------G----T-TTCSEEEEEETTEEEE
T ss_pred -ECccccCCHHHH-HHHHHHHHHHcC-----CCEEEEEecCHH------H----H-HcCCEEEEEECCEEEE
Confidence 999999999875 455577766643 456777775211 1 1 1244778888887653
No 58
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.78 E-value=2.1e-19 Score=203.08 Aligned_cols=176 Identities=19% Similarity=0.194 Sum_probs=126.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+
T Consensus 356 ~~~l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433 (582)
T ss_dssp CCSEEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBH
T ss_pred CccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCH
Confidence 468999999999999 99999999999999999999999999999999998762 48999997633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhhc--------CCC----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRN--------GSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~--------~~d----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++... .. ...+. +.+.++++.+... +++ .....+||||+||+.|||+|. .+|+++||
T Consensus 434 ~eni~~~--~~-~~~~~-~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~-----~~p~illl 504 (582)
T 3b60_A 434 ANNIAYA--RT-EEYSR-EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL-----RDSPILIL 504 (582)
T ss_dssp HHHHHTT--TT-SCCCH-HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhcc--CC-CCCCH-HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH-----hCCCEEEE
Confidence 2333221 10 11122 2233444432211 222 223578999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
||||+++|+.... .+.+.+..+.+ +.+.|++|.--. . + ...-.|+++..|+-+
T Consensus 505 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~tvi~itH~~~------~----~-~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 505 -DEATSALDTESER-AIQAALDELQK-----NRTSLVIAHRLS------T----I-EQADEIVVVEDGIIV 557 (582)
T ss_dssp -ETTTSSCCHHHHH-HHHHHHHHHHT-----TSEEEEECSCGG------G----T-TTCSEEEEEETTEEE
T ss_pred -ECccccCCHHHHH-HHHHHHHHHhC-----CCEEEEEeccHH------H----H-HhCCEEEEEECCEEE
Confidence 9999999999874 45577777653 567788775211 1 1 123467788888765
No 59
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=3.2e-19 Score=201.80 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=126.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+++||++++|+ +++|+|||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+
T Consensus 356 ~~~l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 433 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTI 433 (587)
T ss_dssp CCSEEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CcceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccH
Confidence 468999999999999 99999999999999999999999999999999998872 49999997633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCC----ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSD----VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d----~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++... .. ..+... ..++++.+.. .+++ .....+||||+||+.|||+|. .+|+++||
T Consensus 434 ~eni~~~--~~--~~~~~~-~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~-----~~p~illl 503 (587)
T 3qf4_A 434 KENLKWG--RE--DATDDE-IVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV-----KKPKVLIL 503 (587)
T ss_dssp HHHHTTT--CS--SCCHHH-HHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH-----TCCSEEEE
T ss_pred HHHHhcc--CC--CCCHHH-HHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 3333211 10 112222 2223322211 1222 234578999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+.... .+.+.+..+.+ +.+.|++|+ +...+ ...-.|+++-.|+-+.
T Consensus 504 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~tvi~itH------~l~~~-----~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 504 -DDCTSSVDPITEK-RILDGLKRYTK-----GCTTFIITQ------KIPTA-----LLADKILVLHEGKVAG 557 (587)
T ss_dssp -ESCCTTSCHHHHH-HHHHHHHHHST-----TCEEEEEES------CHHHH-----TTSSEEEEEETTEEEE
T ss_pred -ECCcccCCHHHHH-HHHHHHHHhCC-----CCEEEEEec------ChHHH-----HhCCEEEEEECCEEEE
Confidence 9999999999875 44466666532 567788775 22221 1344788888887663
No 60
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=2.4e-19 Score=203.23 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=126.2
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+|+||++++|+ +++|+|||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+
T Consensus 368 ~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 445 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTV 445 (598)
T ss_dssp SCSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBH
T ss_pred CccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccH
Confidence 458999999999999 99999999999999999999999999999999998872 49999997633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcc----ccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVV----LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~v----liDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++. +.......+ . ..++++.+.. .+++.. -..+||||+||+.|||+|. .+|+++||
T Consensus 446 ~eni~--~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~-----~~p~illl 515 (598)
T 3qf4_B 446 KENLK--YGNPGATDE--E-IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL-----ANPKILIL 515 (598)
T ss_dssp HHHHH--SSSTTCCTT--H-HHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH-----TCCSEEEE
T ss_pred HHHHh--cCCCCCCHH--H-HHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 23321 111111111 1 2222221111 122222 2468999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+.... .+.+.+..+.+ +.+.|++|+= ...+ ...-.|+.+..|+-+.
T Consensus 516 -DEpts~LD~~~~~-~i~~~l~~~~~-----~~t~i~itH~------l~~~-----~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 516 -DEATSNVDTKTEK-SIQAAMWKLME-----GKTSIIIAHR------LNTI-----KNADLIIVLRDGEIVE 569 (598)
T ss_dssp -CCCCTTCCHHHHH-HHHHHHHHHHT-----TSEEEEESCC------TTHH-----HHCSEEEEECSSSEEE
T ss_pred -ECCccCCCHHHHH-HHHHHHHHHcC-----CCEEEEEecC------HHHH-----HcCCEEEEEECCEEEE
Confidence 9999999998875 44567766642 5678887752 2121 1245788888888653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.75 E-value=1.5e-18 Score=194.41 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=110.4
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhh------hhhhcccceeec
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRT------HARRLQVPIFEK 476 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~------~~~~L~v~l~~~ 476 (621)
|..+++++.+|+ +++|+||||||||||+++|+|+++|++|+|.+.+. +++++.|... ..+++.. ...
T Consensus 284 l~~~~~~i~~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~~~~tv~~~l~~--~~~ 356 (538)
T 3ozx_A 284 LVVDNGEAKEGE--IIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPNYDGTVQQYLEN--ASK 356 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCCCSSBHHHHHHH--HCS
T ss_pred EEeccceECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccccCCCHHHHHHH--hhh
Confidence 444566788999 99999999999999999999999999999997654 4677776431 1122111 111
Q ss_pred CCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHH
Q 007024 477 GYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLA 555 (621)
Q Consensus 477 ~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~ 555 (621)
.+.......+.++++.+.... .+..+..+||||+||+.||++|+ .+|+++|| ||||+|||+..+. .+.+.|.
T Consensus 357 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~-----~~p~lLlL-DEPT~gLD~~~~~-~i~~~l~ 429 (538)
T 3ozx_A 357 DALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLA-----KEADLYVL-DQPSSYLDVEERY-IVAKAIK 429 (538)
T ss_dssp STTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCCHHHHH-HHHHHHH
T ss_pred hccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-eCCccCCCHHHHH-HHHHHHH
Confidence 111111123344444444433 36778899999999999999999 99999999 9999999999875 4447777
Q ss_pred HhhcCCCCCCceEEEecc
Q 007024 556 DLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 556 ~l~~~~~~~~it~IIlTK 573 (621)
.+... .+.+++++|.
T Consensus 430 ~l~~~---~g~tvi~vsH 444 (538)
T 3ozx_A 430 RVTRE---RKAVTFIIDH 444 (538)
T ss_dssp HHHHH---TTCEEEEECS
T ss_pred HHHHh---CCCEEEEEeC
Confidence 77542 2567777774
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.74 E-value=1.4e-18 Score=197.07 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=111.3
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc----cee-ecC
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PIF-EKG 477 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v----~l~-~~~ 477 (621)
|+.++|++.+|+ +++|+||||||||||++.|+|++.|++|+|.+ ..++|+++|.......+.+ ... ...
T Consensus 372 l~~~~~~v~~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 372 LEVEPGEIRKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK 445 (607)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEecccccCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE----eeEEEEEecCccCCCCCcHHHHHHhhhccC
Confidence 444555578999 99999999999999999999999999999987 2468999997533211111 000 000
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
+ .+ ...+.++++.+...++ +..+..+|||++||+.||++|+ .+|+++|| ||||+|||+..+. .+.+.|+.
T Consensus 446 ~-~~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~-----~~p~lLlL-DEPt~~LD~~~~~-~l~~~l~~ 516 (607)
T 3bk7_A 446 L-NS-NFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLL-----RDADIYLL-DEPSAYLDVEQRL-AVSRAIRH 516 (607)
T ss_dssp H-HC-HHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHT-----SCCSEEEE-ECTTTTCCHHHHH-HHHHHHHH
T ss_pred C-CH-HHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCccCCCHHHHH-HHHHHHHH
Confidence 0 01 1334556666655443 6778899999999999999999 99999999 9999999999875 45577777
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
+... .+.++|++|.
T Consensus 517 l~~~---~g~tvi~vsH 530 (607)
T 3bk7_A 517 LMEK---NEKTALVVEH 530 (607)
T ss_dssp HHHH---TTCEEEEECS
T ss_pred HHHh---CCCEEEEEeC
Confidence 7532 2567777775
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=1.7e-18 Score=194.00 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=107.9
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc----cee-ecC
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PIF-EKG 477 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v----~l~-~~~ 477 (621)
|+.++|++.+|+ +++|+||||||||||++.|+|+++|++|+|.+ ..++|++.|.......+.+ ... ...
T Consensus 302 l~~~~~~i~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 302 LEVEPGEIKKGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----DLTVAYKPQYIKADYEGTVYELLSKIDASK 375 (538)
T ss_dssp EEECCEEEETTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH
T ss_pred EEeCccccCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE----CceEEEEecCCcCCCCCcHHHHHHhhhccC
Confidence 444555568999 99999999999999999999999999999986 2468999997533211111 000 000
Q ss_pred CCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH
Q 007024 478 YEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 478 ~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~ 556 (621)
+ .+ ...+.++++.+.... .+..+..+|||++|++.||++|+ .+|+++|| ||||+|||+..+. .+.+.|..
T Consensus 376 ~-~~-~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~-----~~p~lLlL-DEPt~~LD~~~~~-~i~~~l~~ 446 (538)
T 1yqt_A 376 L-NS-NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLL-----RDADIYLL-DEPSAYLDVEQRL-AVSRAIRH 446 (538)
T ss_dssp H-TC-HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHT-----SCCSEEEE-ECTTTTCCHHHHH-HHHHHHHH
T ss_pred C-CH-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-eCCcccCCHHHHH-HHHHHHHH
Confidence 0 01 122333333333322 35667889999999999999999 99999999 9999999999875 44477777
Q ss_pred hhcCCCCCCceEEEecc
Q 007024 557 LSSSPNPQLIDGILLTK 573 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK 573 (621)
+... .+.++|++|.
T Consensus 447 l~~~---~g~tvi~vsH 460 (538)
T 1yqt_A 447 LMEK---NEKTALVVEH 460 (538)
T ss_dssp HHHH---HTCEEEEECS
T ss_pred HHHh---CCCEEEEEeC
Confidence 6531 2566777775
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.72 E-value=4.2e-18 Score=190.85 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=109.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE---------EEccccc-----------ceeeeee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 460 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV---------~I~~~Dt-----------~Rigave 460 (621)
.+|.+++ .+.+|+ +++|+||||||||||+++|+|++.|+.|++ .+.+.+. .+++++.
T Consensus 36 ~~l~~vs-~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 112 (538)
T 1yqt_A 36 FVLYRLP-VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKP 112 (538)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEEC
T ss_pred ccccCcC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhh
Confidence 4789999 899999 999999999999999999999999999884 2333321 1245555
Q ss_pred hhhhhhhhcc-cceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 461 QLRTHARRLQ-VPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 461 Ql~~~~~~L~-v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
|.......+. ..+.......+....+.++++.++... .+..+.++||||+|++.||++|+ .+|+++|| ||||
T Consensus 113 q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~-----~~P~lLlL-DEPT 186 (538)
T 1yqt_A 113 QYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL-----RNATFYFF-DEPS 186 (538)
T ss_dssp SCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTT
T ss_pred hhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCc
Confidence 5321111100 000000000000012345555555543 36778899999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
++||+..+. .+.+.|+.+.+. +.++|++|.
T Consensus 187 s~LD~~~~~-~l~~~L~~l~~~----g~tvi~vsH 216 (538)
T 1yqt_A 187 SYLDIRQRL-NAARAIRRLSEE----GKSVLVVEH 216 (538)
T ss_dssp TTCCHHHHH-HHHHHHHHHHHT----TCEEEEECS
T ss_pred ccCCHHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 999999874 445778777642 667888775
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.70 E-value=7.4e-18 Score=191.18 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=109.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE---------EEccccc-----------ceeeeee
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV---------MMAACDT-----------FRSGAVE 460 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV---------~I~~~Dt-----------~Rigave 460 (621)
.+|.+++ .+.+|+ +++|+||||||||||++.|+|++.|+.|++ .+.+.++ .+++++.
T Consensus 106 ~~l~~vs-~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 3788999 899999 999999999999999999999999999885 2333322 1244444
Q ss_pred hhhhhhhhc-ccceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCc
Q 007024 461 QLRTHARRL-QVPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEAL 538 (621)
Q Consensus 461 Ql~~~~~~L-~v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt 538 (621)
|.......+ ...+.......+....+.++++.+++... +..+..+||||+|++.||++|+ .+|+++|| ||||
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~-----~~P~lLlL-DEPT 256 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL-----RKAHFYFF-DEPS 256 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ECTT
T ss_pred chhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCc
Confidence 432111100 00000000000001123455666555443 6677889999999999999999 99999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 539 VGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 539 ~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
++||+..+. .+.+.|+.+.+. +.++|++|.
T Consensus 257 s~LD~~~~~-~l~~~L~~l~~~----g~tvIivsH 286 (607)
T 3bk7_A 257 SYLDIRQRL-KVARVIRRLANE----GKAVLVVEH 286 (607)
T ss_dssp TTCCHHHHH-HHHHHHHHHHHT----TCEEEEECS
T ss_pred ccCCHHHHH-HHHHHHHHHHhc----CCEEEEEec
Confidence 999999874 455778877642 677888875
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=2.3e-17 Score=201.91 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=127.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~-----~ 466 (621)
++|+||||++++|+ .++|||++||||||+++.|.+++.|++|+|.|+|.|+ .++++|+|...+ .
T Consensus 1093 ~VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp CSEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred ccccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 58999999999999 9999999999999999999999999999999999997 249999998743 4
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCcccc----ccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVLV----DTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vli----DtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+|+...+ .....+.. .+.++++.+.. .++|..+. .+|||++|+++|||||. .+|+++||
T Consensus 1171 eNI~~gl--d~~~~sd~-ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll-----r~~~ILiL- 1241 (1321)
T 4f4c_A 1171 ENIIYGL--DPSSVTMA-QVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV-----RNPKILLL- 1241 (1321)
T ss_dssp HHHSSSS--CTTTSCHH-HHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH-----SCCSEEEE-
T ss_pred HHHhccC--CCCCCCHH-HHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH-----hCCCEEEE-
Confidence 4432111 00111222 23444444322 35676664 48999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+... ..+.+.|+.+. .+.|.|++++ +.++ ...=.|+.+-.|+-++
T Consensus 1242 DEaTSaLD~~tE-~~Iq~~l~~~~-----~~~TvI~IAHRLsTi------------~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1242 DEATSALDTESE-KVVQEALDRAR-----EGRTCIVIAHRLNTV------------MNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp ESCCCSTTSHHH-HHHHHHHTTTS-----SSSEEEEECSSSSTT------------TTCSEEEEESSSSEEE
T ss_pred eCccccCCHHHH-HHHHHHHHHHc-----CCCEEEEeccCHHHH------------HhCCEEEEEECCEEEE
Confidence 999999999875 34445554332 2556666654 4433 1122677777777663
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-17 Score=186.55 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=110.6
Q ss_pred cccccccccccC-----CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh------hhhcc
Q 007024 402 ILRDVHAAKEQR-----KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH------ARRLQ 470 (621)
Q Consensus 402 iL~dIs~~i~~G-----ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~------~~~L~ 470 (621)
++++++|++.+| + +++|+||||||||||++.|+|+++|++|+.. ...+++++.|.... .+.+.
T Consensus 362 ~l~~vsl~v~~G~~~~GE--iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----~~~~i~~~~q~~~~~~~~tv~e~~~ 435 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSE--ILVMMGENGTGKTTLIKLLAGALKPDEGQDI----PKLNVSMKPQKIAPKFPGTVRQLFF 435 (608)
T ss_dssp ECSSCEEEECCEECCTTC--EEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----CSCCEEEECSSCCCCCCSBHHHHHH
T ss_pred ccCceEEEEecCccccce--EEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----cCCcEEEecccccccCCccHHHHHH
Confidence 577899999887 6 8999999999999999999999999998631 12357777775311 11111
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 471 VPIFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 471 v~l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
..+ .....+ ...+.++++.+...++ +..+..+|||++||+.||++|+ .+|+++|| ||||+|||+..+. .
T Consensus 436 ~~~--~~~~~~-~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~-----~~p~lLlL-DEPT~gLD~~~~~-~ 505 (608)
T 3j16_B 436 KKI--RGQFLN-PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALG-----IPADIYLI-DEPSAYLDSEQRI-I 505 (608)
T ss_dssp HHC--SSTTTS-HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTT-----SCCSEEEE-CCTTTTCCHHHHH-H
T ss_pred HHh--hccccc-HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHH-----hCCCEEEE-ECCCCCCCHHHHH-H
Confidence 111 011112 2344556666665554 6778899999999999999999 99999999 9999999998874 4
Q ss_pred HHHHHHHhhcCCCCCCceEEEecc
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.+.|..+... .+.+++++|.
T Consensus 506 i~~ll~~l~~~---~g~tviivtH 526 (608)
T 3j16_B 506 CSKVIRRFILH---NKKTAFIVEH 526 (608)
T ss_dssp HHHHHHHHHHH---HTCEEEEECS
T ss_pred HHHHHHHHHHh---CCCEEEEEeC
Confidence 44677776432 2667888775
No 68
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.68 E-value=6.2e-17 Score=185.70 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=98.1
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHH---------------------HHHHHhHhhc-------CcEEEEcc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL---------------------AKVAYWLLQH-------KVSVMMAA 450 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlL---------------------akLAg~L~~~-------~GkV~I~~ 450 (621)
...+|++|||++++|+ +++|+||||||||||+ +.+++++.|+ .+.|.+.+
T Consensus 30 ~~~~L~~vsl~i~~Ge--~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGK--LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp CSTTCCSEEEEEETTS--EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred CccceeccEEEECCCC--EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 4568999999999999 9999999999999998 7777888887 44555555
Q ss_pred ccc-----ceeeeeehhhhhhhhc-----------------------ccceeecC-CCCCHH----HHHH------HHHH
Q 007024 451 CDT-----FRSGAVEQLRTHARRL-----------------------QVPIFEKG-YEKDPA----IVAK------EAIQ 491 (621)
Q Consensus 451 ~Dt-----~RigaveQl~~~~~~L-----------------------~v~l~~~~-~~~d~~----~ia~------~al~ 491 (621)
.+. .++|++.|...+...+ ++.++... ...... .... ..++
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 443 1255555543221110 01110000 000000 0000 1122
Q ss_pred HHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCCCc--EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCce
Q 007024 492 EATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (621)
Q Consensus 492 ~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd--lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (621)
.+.+.. .+..+..+||||+||+.|||+|+ .+|+ ++|| ||||+|||+..+. .+.+.|..+... +.+
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~-----~~p~~~lLlL-DEPtsgLD~~~~~-~l~~~l~~l~~~----g~t 256 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIG-----SRLTGVLYVL-DEPSIGLHQRDND-RLIATLKSMRDL----GNT 256 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHH-----TCCCSCEEEE-ECTTTTCCGGGHH-HHHHHHHHHHHT----TCE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHh-----hCCCCCEEEE-ECCccCCCHHHHH-HHHHHHHHHHHc----CCE
Confidence 233322 35677889999999999999999 9988 8888 9999999998874 455777777643 678
Q ss_pred EEEecc
Q 007024 568 GILLTK 573 (621)
Q Consensus 568 ~IIlTK 573 (621)
+|++|.
T Consensus 257 vi~vtH 262 (670)
T 3ux8_A 257 LIVVEH 262 (670)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 888886
No 69
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.67 E-value=7.8e-17 Score=196.81 Aligned_cols=176 Identities=18% Similarity=0.208 Sum_probs=125.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----h
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH-----A 466 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~-----~ 466 (621)
.+|+++||++++|+ +++|||||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|.+.+ .
T Consensus 1047 ~~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 1124 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124 (1284)
T ss_dssp CSBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHH
T ss_pred eeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHH
Confidence 48999999999999 99999999999999999999999999999999998862 49999998733 3
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhh--------cCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEEE
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATR--------NGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFV 534 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~--------~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILLV 534 (621)
+++.... ......... +.++++.+.. .++|..+ ..+|||++||+.|||+|. .+|+++||
T Consensus 1125 eNi~~~~--~~~~~~~~~-i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~-----~~p~iLiL- 1195 (1284)
T 3g5u_A 1125 ENIAYGD--NSRVVSYEE-IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV-----RQPHILLL- 1195 (1284)
T ss_dssp HHHTCCC--SSCCCCHHH-HHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH-----HCCSSEEE-
T ss_pred HHHhccC--CCCCCCHHH-HHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH-----cCCCEEEE-
Confidence 3332211 111112222 2233332211 1233333 368999999999999999 99999999
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc-ccccccchhHHHHhHHHhCCcEEEEecCCCCC
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK-FDTIDDKVGAALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK-~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
||||+++|+... ..+.+.++.+.. +.++|++|. ++++ ...-.|+.+..|+-+.
T Consensus 1196 DEpTs~lD~~~~-~~i~~~l~~~~~-----~~tvi~isH~l~~i------------~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1196 DEATSALDTESE-KVVQEALDKARE-----GRTCIVIAHRLSTI------------QNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp ESCSSSCCHHHH-HHHHHHHHHHSS-----SSCEEEECSCTTGG------------GSCSEEEEEETBEEEE
T ss_pred eCCcccCCHHHH-HHHHHHHHHhCC-----CCEEEEEecCHHHH------------HcCCEEEEEECCEEEE
Confidence 999999999876 455567765432 567777775 2222 1133677777777653
No 70
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.67 E-value=5.2e-17 Score=198.39 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=114.6
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhh-----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTH----- 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~----- 465 (621)
..+|+||||++++|+ +++|||||||||||+++.|+|++.|++|+|.++|.|+. ++|+++|...+
T Consensus 403 ~~vL~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti 480 (1284)
T 3g5u_A 403 VQILKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTI 480 (1284)
T ss_dssp CCSEEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCH
T ss_pred CcceecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccH
Confidence 468999999999999 99999999999999999999999999999999998862 39999997633
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHh-------h-cCCCc----cccccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEAT-------R-NGSDV----VLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~-------~-~~~d~----vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+++.... . ..+... ..++++.+. . .+++. ....+|||++||++|||+|. .+|+++||
T Consensus 481 ~eNi~~g~--~--~~~~~~-~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~-----~~p~iliL 550 (1284)
T 3g5u_A 481 AENIRYGR--E--DVTMDE-IEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV-----RNPKILLL 550 (1284)
T ss_dssp HHHHHHHC--S--SCCHHH-HHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH-----HCCSEEEE
T ss_pred HHHHhcCC--C--CCCHHH-HHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh-----cCCCEEEE
Confidence 33332111 0 112222 222222211 1 12332 23478999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||++||+... ..+.+.+..+.. +.+.|++|+
T Consensus 551 -DEpts~LD~~~~-~~i~~~l~~~~~-----~~t~i~itH 583 (1284)
T 3g5u_A 551 -DEATSALDTESE-AVVQAALDKARE-----GRTTIVIAH 583 (1284)
T ss_dssp -ESTTCSSCHHHH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred -ECCCCCCCHHHH-HHHHHHHHHHcC-----CCEEEEEec
Confidence 999999999875 466667766543 556777764
No 71
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.67 E-value=6.6e-17 Score=197.90 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=118.8
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhh-----h
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRT-----H 465 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~-----~ 465 (621)
..+|+||||++++|+ .++||||+||||||+++.|.|++.|++|+|.++|.|+. ++|+|.|... .
T Consensus 431 ~~vL~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI 508 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508 (1321)
T ss_dssp SCSEEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEH
T ss_pred CceeeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCch
Confidence 468999999999999 99999999999999999999999999999999998872 4999999873 3
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHh--------hcCCCccc----cccchhHHhHHHHHHHHHhhhhcCCCcEEEE
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEAT--------RNGSDVVL----VDTAGRMQDNEPLMRALSKLIYLNNPDLVLF 533 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~--------~~~~d~vl----iDtSGg~qqr~~LaraL~~l~~~~~PdlILL 533 (621)
.+|+. +.. . ..+. +...++++.+. -.+++..+ +.+|||++||++|||+|. .+|+++||
T Consensus 509 ~eNI~--~g~-~-~~~~-~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~-----~~~~IliL 578 (1321)
T 4f4c_A 509 EENIS--LGK-E-GITR-EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV-----RNPKILLL 578 (1321)
T ss_dssp HHHHH--TTC-T-TCCH-HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT-----TCCSEEEE
T ss_pred hHHHh--hhc-c-cchH-HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc-----cCCCEEEE
Confidence 44432 110 0 1122 22334443321 13556555 458999999999999999 99999999
Q ss_pred EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 534 VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 534 VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
||||+++|+... ..+.+++..+.+ +.|.|++|+
T Consensus 579 -DE~tSaLD~~te-~~i~~~l~~~~~-----~~T~iiiaH 611 (1321)
T 4f4c_A 579 -DEATSALDAESE-GIVQQALDKAAK-----GRTTIIIAH 611 (1321)
T ss_dssp -ESTTTTSCTTTH-HHHHHHHHHHHT-----TSEEEEECS
T ss_pred -ecccccCCHHHH-HHHHHHHHHHhC-----CCEEEEEcc
Confidence 999999999864 567788877754 556677664
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.8e-17 Score=182.32 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=100.9
Q ss_pred ccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-----------Ecccccce---------ee--eee
Q 007024 403 LRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-----------MAACDTFR---------SG--AVE 460 (621)
Q Consensus 403 L~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-----------I~~~Dt~R---------ig--ave 460 (621)
|++++ .+.+|+ +++|+||||||||||+++|+|++.|+.|+|. +.+.+... +. ...
T Consensus 94 l~~l~-~~~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 94 LHRLP-TPRPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp EECCC-CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred ecCCC-CCCCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 44443 467899 9999999999999999999999999999873 22221100 00 000
Q ss_pred hhhhh-hhhc-c----cc-eeecCCCCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 461 QLRTH-ARRL-Q----VP-IFEKGYEKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 461 Ql~~~-~~~L-~----v~-l~~~~~~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
|.... .... + +. +... ........+.++++.+.+... +..+.++|||++|++.||++|+ .+|+++|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~-----~~p~lll 244 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCV-----QEADVYM 244 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHH-----SCCSEEE
T ss_pred hhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHH-----hCCCEEE
Confidence 00000 0000 0 00 0000 001112345556666655433 6678899999999999999999 9999999
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
| ||||++||+..+. .+.+.++.+... +.++|++|.
T Consensus 245 l-DEPts~LD~~~~~-~l~~~l~~l~~~----g~tvi~vtH 279 (608)
T 3j16_B 245 F-DEPSSYLDVKQRL-NAAQIIRSLLAP----TKYVICVEH 279 (608)
T ss_dssp E-ECTTTTCCHHHHH-HHHHHHHGGGTT----TCEEEEECS
T ss_pred E-ECcccCCCHHHHH-HHHHHHHHHHhC----CCEEEEEeC
Confidence 9 9999999998864 444777777643 567777765
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.65 E-value=1.9e-16 Score=186.72 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=53.2
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLR 463 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~ 463 (621)
.+|+++||.+..|+ +++|+||||||||||++.|+|++.|++|+|.+.+. .|+|++.|..
T Consensus 687 ~iL~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~ 745 (986)
T 2iw3_A 687 PQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHA 745 (986)
T ss_dssp CSEEEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHH
T ss_pred eeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccch
Confidence 57999999999999 99999999999999999999999999999999752 3788888754
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.64 E-value=8e-17 Score=180.40 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=96.7
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE-----------EEcccccce-----------eeeeehhhhhhhh
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-----------MMAACDTFR-----------SGAVEQLRTHARR 468 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV-----------~I~~~Dt~R-----------igaveQl~~~~~~ 468 (621)
.+|+ +++|+||||||||||+++|+|++.|+.|+| .+.+.++.. +....|.......
T Consensus 23 ~~Ge--i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 23 KNNT--ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CTTE--EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 4788 999999999999999999999999999988 344433310 1111111100000
Q ss_pred c-ccceeecCCCCCHHHHHHHHHHHHhhcC-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 469 L-QVPIFEKGYEKDPAIVAKEAIQEATRNG-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 469 L-~v~l~~~~~~~d~~~ia~~al~~~~~~~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+ ...+.......+....+.++++.+.... .+..+.++|||++|++.||++|+ .+|+++|| ||||++||+..+
T Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~-----~~p~illl-DEPts~LD~~~~ 174 (538)
T 3ozx_A 101 FLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLL-----READVYIF-DQPSSYLDVRER 174 (538)
T ss_dssp TCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH-----SCCSEEEE-ESTTTTCCHHHH
T ss_pred hccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH-----cCCCEEEE-ECCcccCCHHHH
Confidence 0 0000000000000012344555554433 36778899999999999999999 99999999 999999999987
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
. .+.+.|+.+.. +.++|++|.
T Consensus 175 ~-~l~~~l~~l~~-----g~tii~vsH 195 (538)
T 3ozx_A 175 M-NMAKAIRELLK-----NKYVIVVDH 195 (538)
T ss_dssp H-HHHHHHHHHCT-----TSEEEEECS
T ss_pred H-HHHHHHHHHhC-----CCEEEEEEe
Confidence 5 44477777743 567777765
No 75
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.60 E-value=2.4e-15 Score=177.39 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=110.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc---cceeeeeehhh-------hhhhhc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD---TFRSGAVEQLR-------THARRL 469 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D---t~RigaveQl~-------~~~~~L 469 (621)
..+|+++||++.+|+ +++|+||||||||||+++|+| |.| .+.+ ..|+++++|.. +..+++
T Consensus 448 ~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l 517 (986)
T 2iw3_A 448 KILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDIDGTHSDTSVLDFV 517 (986)
T ss_dssp EEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCCCCCTTSBHHHHH
T ss_pred EEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccccccccCCcHHHHH
Confidence 458999999999999 999999999999999999995 222 1211 13456666532 111211
Q ss_pred ccceeecCCCCCHHHHHHHHHHHHhhc-C-CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH
Q 007024 470 QVPIFEKGYEKDPAIVAKEAIQEATRN-G-SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL 547 (621)
Q Consensus 470 ~v~l~~~~~~~d~~~ia~~al~~~~~~-~-~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~ 547 (621)
.. ..++. ...+.++++.++.. . .+..+.++||||+||+.|+++|+ .+|+++|| ||||++||+..+.
T Consensus 518 ~~----~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~-----~~P~lLLL-DEPTs~LD~~~~~ 585 (986)
T 2iw3_A 518 FE----SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL-----RNADILLL-DEPTNHLDTVNVA 585 (986)
T ss_dssp HT----TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH-----TTCSEEEE-ESTTTTCCHHHHH
T ss_pred HH----hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh-----cCCCEEEE-ECCccCCCHHHHH
Confidence 11 11111 33445556555442 1 24567899999999999999999 99999999 9999999998874
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEecCCC
Q 007024 548 SKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVGCGQS 603 (621)
Q Consensus 548 ~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg~Gq~ 603 (621)
.+.+.|.. .+.++|++|. .... +....-.|+++..|+-
T Consensus 586 -~l~~~L~~-------~g~tvIivSH------dl~~----l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 586 -WLVNYLNT-------CGITSITISH------DSVF----LDNVCEYIINYEGLKL 623 (986)
T ss_dssp -HHHHHHHH-------SCSEEEEECS------CHHH----HHHHCSEEEEEETTEE
T ss_pred -HHHHHHHh-------CCCEEEEEEC------CHHH----HHHhCCEEEEEECCee
Confidence 44455543 2677888775 2222 2233346777777764
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.57 E-value=3.2e-17 Score=177.80 Aligned_cols=151 Identities=12% Similarity=0.094 Sum_probs=102.6
Q ss_pred ccccccccccccCC------------------ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehh
Q 007024 401 DILRDVHAAKEQRK------------------PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL 462 (621)
Q Consensus 401 ~iL~dIs~~i~~Ge------------------p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl 462 (621)
.+|++|++++++|+ +.+++|+||||||||||++.|+|++.|+.|+|.+.+.++.|.+++.|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 35566666666654 349999999999999999999999999999999998887666778775
Q ss_pred hhhhhhcccceee-cCCCCCHHHHHHHHHHHHhhcCCCccccccchh--HHhHHHHHHHHHhh-----hhcCCCcEEEEE
Q 007024 463 RTHARRLQVPIFE-KGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGR--MQDNEPLMRALSKL-----IYLNNPDLVLFV 534 (621)
Q Consensus 463 ~~~~~~L~v~l~~-~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg--~qqr~~LaraL~~l-----~~~~~PdlILLV 534 (621)
.. ...+. +.. .+++.. ...+.++++.+...+++..+. +||| ++|++.++++|... +..++||++++
T Consensus 117 ~~-~~~lt--v~D~~g~~~~-~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllL- 190 (413)
T 1tq4_A 117 PN-IPNVV--FWDLPGIGST-NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDIT- 190 (413)
T ss_dssp SS-CTTEE--EEECCCGGGS-SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHH-
T ss_pred cc-cCCee--ehHhhcccch-HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCccccc-
Confidence 32 21221 110 011110 112345566666666666666 8999 99999999999941 12238898888
Q ss_pred eCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 535 GEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 535 DEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
||||+|+|+..+. .+.+.++.+.
T Consensus 191 DEPtsgLD~~~~~-~l~~~l~~l~ 213 (413)
T 1tq4_A 191 NEADGEPQTFDKE-KVLQDIRLNC 213 (413)
T ss_dssp HHHTTCCTTCCHH-HHHHHHHHHH
T ss_pred CcccccCCHHHHH-HHHHHHHHHH
Confidence 9999999998764 3446666663
No 77
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.54 E-value=1.7e-14 Score=165.39 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=51.8
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCC---cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~P---dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+||||+||+.|||+|+ .+| +++|| ||||+|||+..+. .+.+.+..+.+. +.++|++|.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~-----~~p~~p~llll-DEPt~~LD~~~~~-~i~~~l~~l~~~----g~tvi~vtH 604 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELH-----RRSNGRTLYIL-DEPTTGLHVDDIA-RLLDVLHRLVDN----GDTVLVIEH 604 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHH-----SCCCSCEEEEE-ESTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECC
T ss_pred cCCchhCCHHHHHHHHHHHHHh-----hCCCCCcEEEE-eCCCCCCCHHHHH-HHHHHHHHHHHC----CCEEEEEeC
Confidence 4567889999999999999999 776 47777 9999999999875 445777777643 678888875
No 78
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.52 E-value=1.9e-15 Score=143.99 Aligned_cols=115 Identities=16% Similarity=0.088 Sum_probs=68.3
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHH
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ 484 (621)
+|||.+++|+ +++|+|||||||||+++.+.+ |... ...|..| |++.|........+ ....
T Consensus 1 ~vsl~i~~ge--i~~l~G~nGsGKSTl~~~~~~------~~~~-~~~d~~~-g~~~~~~~~~~~~~----------~~~~ 60 (171)
T 4gp7_A 1 SMKLTIPELS--LVVLIGSSGSGKSTFAKKHFK------PTEV-ISSDFCR-GLMSDDENDQTVTG----------AAFD 60 (171)
T ss_dssp CEEEEEESSE--EEEEECCTTSCHHHHHHHHSC------GGGE-EEHHHHH-HHHCSSTTCGGGHH----------HHHH
T ss_pred CccccCCCCE--EEEEECCCCCCHHHHHHHHcc------CCeE-EccHHHH-HHhcCcccchhhHH----------HHHH
Confidence 5789999999 999999999999999997431 1111 1222222 22222110000000 0000
Q ss_pred HHHHHHHHHhhcCCCcc---ccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 485 VAKEAIQEATRNGSDVV---LVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 485 ia~~al~~~~~~~~d~v---liDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
............++..+ ....+|+++|++.||++|. .+|++++| ||||+++|+..
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~-----~~p~~lll-DEPt~~Ld~~~ 118 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYH-----CFPVAVVF-NLPEKVCQERN 118 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTT-----CEEEEEEE-CCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcC-----CcEEEEEE-eCCHHHHHHHH
Confidence 01111111112233222 2335899999999999999 99999999 99999999874
No 79
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4e-16 Score=171.56 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=112.1
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-E-EEEcccccc-eeeeeehhhhh---hhhc----cccee
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-S-VMMAACDTF-RSGAVEQLRTH---ARRL----QVPIF 474 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-k-V~I~~~Dt~-RigaveQl~~~---~~~L----~v~l~ 474 (621)
+++|.+.+|+ +++|+||||||||||+++|+|++.+++| + |.+.+ |.. ++++++|.... ...+ ++ +.
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-DPQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-CTTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-CccCCeeeeccchhhcccccccchhhhh-cc
Confidence 5788888999 9999999999999999999999999999 9 98887 443 47888875421 1111 11 11
Q ss_pred ecC-CCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHH--HHhhhhcCCCcE----EEEEeC-CcCCCCHHHH
Q 007024 475 EKG-YEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRA--LSKLIYLNNPDL----VLFVGE-ALVGNDAVDQ 546 (621)
Q Consensus 475 ~~~-~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~Lara--L~~l~~~~~Pdl----ILLVDE-pt~GlD~~~q 546 (621)
... .+......+.+++..++...+.. ...+|||++|++.++++ |+ .+|++ +|| || ||++||+.
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~-----~~p~i~~sGLlL-DEpPts~LD~~-- 276 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLH-----LDPQVRRSGCIV-DTPSISQLDEN-- 276 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHH-----HCHHHHHSCEEE-ECCCGGGSCSS--
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhc-----cCcccCcceEEE-eCCcccccChh--
Confidence 100 01000001111122222222211 56889999999999999 99 99999 999 99 99999987
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEeccccccccchh--HHHHhHHHhC-CcEEEEe-cCCCC
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG--AALSMVYVSG-APVMFVG-CGQSY 604 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG--~~ls~~~~~g-~PI~fvg-~Gq~v 604 (621)
...+.+.+..+ +++.+++|.-.. +..- .+..++...+ .-|+++- .|.-+
T Consensus 277 ~~~l~~l~~~~-------~~tviiVth~~~--~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 277 LAELHHIIEKL-------NVNIMLVLCSET--DPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CHHHHHHHHHT-------TCCEEEEECCSS--CTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred HHHHHHHHHHh-------CCCEEEEEccCc--hhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 33444444332 456777764211 0021 2333443211 1388888 88776
No 80
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.45 E-value=3e-15 Score=148.00 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=77.7
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc--cc---c-ceeeeeehhhhhhhhc-cc--ceeecCCCCC
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CD---T-FRSGAVEQLRTHARRL-QV--PIFEKGYEKD 481 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~--~D---t-~RigaveQl~~~~~~L-~v--~l~~~~~~~d 481 (621)
.+|+ +++|+||||||||||+++|+|+ .|++|+|.... .. . .++|+++|.. .+++ .. +++.......
T Consensus 20 ~~Ge--~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~--~enl~~~~~~~~~~~~~~~ 94 (208)
T 3b85_A 20 DTNT--IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL--NEKIDPYLRPLHDALRDMV 94 (208)
T ss_dssp HHCS--EEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--------CTTTHHHHHHHTTTS
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--HHHHHHHHHHHHHHHHHhc
Confidence 4788 9999999999999999999999 99999885311 11 1 2478888854 2222 11 0000000000
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
....+.++++ . + .||+|++.||++|+ .+|+++|| ||||+| .+ ..+.+.|..+ .
T Consensus 95 ~~~~~~~~l~---~-g---------lGq~qrv~lAraL~-----~~p~lllL-DEPts~----~~-~~l~~~l~~l-~-- 147 (208)
T 3b85_A 95 EPEVIPKLME---A-G---------IVEVAPLAYMRGRT-----LNDAFVIL-DEAQNT----TP-AQMKMFLTRL-G-- 147 (208)
T ss_dssp CTTHHHHHHH---T-T---------SEEEEEGGGGTTCC-----BCSEEEEE-CSGGGC----CH-HHHHHHHTTB-C--
T ss_pred cHHHHHHHHH---h-C---------CchHHHHHHHHHHh-----cCCCEEEE-eCCccc----cH-HHHHHHHHHh-c--
Confidence 0011222221 1 1 19999999999999 99999999 999999 22 2344555444 2
Q ss_pred CCCCceEEEecccccc
Q 007024 562 NPQLIDGILLTKFDTI 577 (621)
Q Consensus 562 ~~~~it~IIlTK~De~ 577 (621)
.+.++|+...++.+
T Consensus 148 --~g~tiivtHd~~~~ 161 (208)
T 3b85_A 148 --FGSKMVVTGDITQV 161 (208)
T ss_dssp --TTCEEEEEEC----
T ss_pred --CCCEEEEECCHHHH
Confidence 25556633334444
No 81
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.45 E-value=8.2e-14 Score=149.83 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=63.8
Q ss_pred cchhHHhHHHHHHHHHhhhhcCCC--cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchh
Q 007024 505 TAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVG 582 (621)
Q Consensus 505 tSGg~qqr~~LaraL~~l~~~~~P--dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG 582 (621)
+|||+++++.||++|. .+| +++|| ||||+|||+..+. .+.+.|..+.+ +.++|++|.- .
T Consensus 296 lSgGe~qrl~lA~~l~-----~~~~~~~LlL-DEpt~~LD~~~~~-~l~~~L~~l~~-----~~~vi~itH~------~- 356 (415)
T 4aby_A 296 ASGGELSRVMLAVSTV-----LGADTPSVVF-DEVDAGIGGAAAI-AVAEQLSRLAD-----TRQVLVVTHL------A- 356 (415)
T ss_dssp SCHHHHHHHHHHHHHH-----HCCSSSEEEE-SSTTTTCCHHHHH-HHHHHHHHHTT-----TSEEEEECSC------H-
T ss_pred cCHhHHHHHHHHHHHH-----hCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHhC-----CCEEEEEeCc------H-
Confidence 6999999999999998 888 98888 9999999999864 55577777752 5678888852 1
Q ss_pred HHHHhHHHhCCcEEEE----ecCCCCCcccCCCHH
Q 007024 583 AALSMVYVSGAPVMFV----GCGQSYTDLKKLNVK 613 (621)
Q Consensus 583 ~~ls~~~~~g~PI~fv----g~Gq~v~DL~~~~~~ 613 (621)
.++. ..-.++.+ ..|+.+..+..++.+
T Consensus 357 ~~~~----~~d~i~~l~k~~~~G~~~~~~~~l~~~ 387 (415)
T 4aby_A 357 QIAA----RAHHHYKVEKQVEDGRTVSHVRLLTGD 387 (415)
T ss_dssp HHHT----TCSEEEEEEEEEETTEEEEEEEECCSH
T ss_pred HHHh----hcCeEEEEEEeccCCceEEEEEECCch
Confidence 1222 23467777 788887766655543
No 82
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.45 E-value=1.1e-14 Score=149.41 Aligned_cols=142 Identities=16% Similarity=0.092 Sum_probs=81.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc------ceeeeeehhhhhhhhccc----ceeecCCCCCHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT------FRSGAVEQLRTHARRLQV----PIFEKGYEKDPAIV 485 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt------~RigaveQl~~~~~~L~v----~l~~~~~~~d~~~i 485 (621)
..++||||||||||||++.|+|++.|..|+|.+.+.++ .++|++.|...+...+.+ .+............
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 37999999999999999999999999999999988764 248888886544333321 11111111111111
Q ss_pred HHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 486 AKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 486 a~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
+.+.+. ..-.+...-.+|||++|++.++|+++ . ++|+|||+.|+|+.+. +.++.+... .
T Consensus 83 i~~~~~---~~~~~~~~~~LS~G~~qrv~iaRal~-----~----lllldep~~gL~~lD~-----~~l~~L~~~----~ 141 (270)
T 3sop_A 83 IEKYIN---EQYEKFLKEEVNIARKKRIPDTRVHC-----C----LYFISPTGHSLRPLDL-----EFMKHLSKV----V 141 (270)
T ss_dssp HHHHHH---HHHHHHHHHHSCTTCCSSCCCCSCCE-----E----EEEECCCSSSCCHHHH-----HHHHHHHTT----S
T ss_pred HHHHHH---HHHHhhhHHhcCcccchhhhhheeee-----e----eEEEecCCCcCCHHHH-----HHHHHHHhc----C
Confidence 222221 11113455678999999999998776 2 5555999999999884 455555543 3
Q ss_pred ceEEEeccccccc
Q 007024 566 IDGILLTKFDTID 578 (621)
Q Consensus 566 it~IIlTK~De~~ 578 (621)
.-.++++|.|.+.
T Consensus 142 ~vI~Vi~K~D~lt 154 (270)
T 3sop_A 142 NIIPVIAKADTMT 154 (270)
T ss_dssp EEEEEETTGGGSC
T ss_pred cEEEEEeccccCC
Confidence 4578999999873
No 83
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.43 E-value=2.7e-13 Score=130.57 Aligned_cols=121 Identities=13% Similarity=0.101 Sum_probs=78.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---------ceeeeeehhhhhhhhcccceeecCCCCCHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---------FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---------~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~ 487 (621)
.++|+||||||||||+++|+|++. |.+.+.+. .++|++.|..+..+.+ +...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~----~~~~~~~~------ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKI----FSSKFFTS------ 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTCCEEE----EEETTCCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcHHHHH----HHhhcCCc------
Confidence 689999999999999999999985 22222211 2467777654211111 11100000
Q ss_pred HHHHHHhhcCCCccccccchhHHhHHHHHHH-----HHhhhhcCCCcEEEEEeC--CcCCCCHHHHHHHHHHHHHHhhcC
Q 007024 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRA-----LSKLIYLNNPDLVLFVGE--ALVGNDAVDQLSKFNQKLADLSSS 560 (621)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~qqr~~Lara-----L~~l~~~~~PdlILLVDE--pt~GlD~~~q~~~f~~~L~~l~~~ 560 (621)
....+....++|||++|++.++++ |. .+|+++|+ || |++++|+..+ +.+.+.+ ..
T Consensus 67 -------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~-----~~p~llil-DEigp~~~ld~~~~-~~l~~~l----~~ 128 (178)
T 1ye8_A 67 -------KKLVGSYGVNVQYFEELAIPILERAYREAKK-----DRRKVIII-DEIGKMELFSKKFR-DLVRQIM----HD 128 (178)
T ss_dssp -------SSEETTEEECHHHHHHHHHHHHHHHHHHHHH-----CTTCEEEE-CCCSTTGGGCHHHH-HHHHHHH----TC
T ss_pred -------cccccccccCcCHHHHHHHHHHhhccccccc-----cCCCEEEE-eCCCCcccCCHHHH-HHHHHHH----hc
Confidence 011244567899999999999996 88 99999999 99 9999998765 2332333 22
Q ss_pred CCCCCceEEEecc
Q 007024 561 PNPQLIDGILLTK 573 (621)
Q Consensus 561 ~~~~~it~IIlTK 573 (621)
.+.+.+++|.
T Consensus 129 ---~~~~~i~~~H 138 (178)
T 1ye8_A 129 ---PNVNVVATIP 138 (178)
T ss_dssp ---TTSEEEEECC
T ss_pred ---CCCeEEEEEc
Confidence 2555777774
No 84
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.40 E-value=3.2e-13 Score=157.74 Aligned_cols=75 Identities=13% Similarity=0.146 Sum_probs=56.3
Q ss_pred HHHHHHhhcC--CCccccccchhHHhHHHHHHHHHhhhhcCC---CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC
Q 007024 488 EAIQEATRNG--SDVVLVDTAGRMQDNEPLMRALSKLIYLNN---PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (621)
Q Consensus 488 ~al~~~~~~~--~d~vliDtSGg~qqr~~LaraL~~l~~~~~---PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (621)
++++.+.+.. .+..+..+|||++|++.||++|. .+ |+++|| ||||+|||+.++. .+.+.|..+.+.
T Consensus 712 ~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~-~l~~lL~~L~~~-- 782 (842)
T 2vf7_A 712 DTLREVGLGYLRLGQPATELSGGEAQRIKLATELR-----RSGRGGTVYVL-DEPTTGLHPADVE-RLQRQLVKLVDA-- 782 (842)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTS-----SCCSSCEEEEE-ECTTTTCCHHHHH-HHHHHHHHHHHT--
T ss_pred HHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHH-----hCCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC--
Confidence 3444444432 25667889999999999999999 75 688888 9999999999874 555777777653
Q ss_pred CCCceEEEecc
Q 007024 563 PQLIDGILLTK 573 (621)
Q Consensus 563 ~~~it~IIlTK 573 (621)
+.++|++|.
T Consensus 783 --G~tVIvisH 791 (842)
T 2vf7_A 783 --GNTVIAVEH 791 (842)
T ss_dssp --TCEEEEECC
T ss_pred --CCEEEEEcC
Confidence 567777775
No 85
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.36 E-value=6.6e-13 Score=127.13 Aligned_cols=113 Identities=12% Similarity=0.176 Sum_probs=93.1
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHHhhhccccCCCceeecCCCCceeeeeEeecccceEEEEEeccccc
Q 007024 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGLASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRILH 80 (621)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~~~leer~~~~~~~~~~~~~~~~l~w~~~n~~~lvfv~vyq~~l~ 80 (621)
|++.+++|++||+|||+++.. .....++++.+|+.+.. +.+..+|++| +|+++|..+| ||+|++|+++.+.
T Consensus 44 M~ilYa~VaRG~~VLae~t~~-~gnf~~iak~ll~kl~~--~~~r~s~~~~----~y~fHyl~~n--gl~yl~I~D~~yp 114 (169)
T 2vx8_A 44 MAILFAVVARGTTILAKHAWC-GGNFLEVTEQILAKIPS--ENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDFE 114 (169)
T ss_dssp SCCCEEEEEETTEEEEEEESS-CBSHHHHHHHHHTTSCS--SCEEEEEEET----TEEEEEEEET--TEEEEEEEETTSC
T ss_pred CceEEEEEEcCCEEEEEeccC-CCCHHHHHHHHHhhCCC--CCCceEEEEC----CEEEEEEEEC--CEEEEEEEccccc
Confidence 999999999999999995432 24566677777777765 4455689999 9999999987 8999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHHHHH
Q 007024 81 LLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEAEAR 123 (621)
Q Consensus 81 l~y~d~ll~~~~~~f~~~y~~~~---~~~~~f~~~f~~~l~~~e~~ 123 (621)
..+...||++|+.+|.+.|++.. ..| .|+++|+..|++.+..
T Consensus 115 ~r~AF~fLedI~~eF~~~y~~~~~~a~py-sf~~eF~~~Lk~~~~~ 159 (169)
T 2vx8_A 115 RSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQLKH 159 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTGGGTCCTT-TTHHHHHHHHSCC---
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhccCCc-chhHHHHHHHHHHHHH
Confidence 99999999999999999998643 245 7999999999876654
No 86
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.36 E-value=1.1e-12 Score=154.09 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCC---cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~P---dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.||++|. .+| +++|| ||||+|||+.++. .+.+.|..+... +.++|++|.
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~-~l~~lL~~L~~~----G~TVIvisH 906 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELH-----RRSNGRTLYIL-DEPTTGLHVDDIA-RLLDVLHRLVDN----GDTVLVIEH 906 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHS-----SCCCSCEEEEE-ECTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECC
T ss_pred cCchhhCCHHHHHHHHHHHHHh-----cCCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEcC
Confidence 5667889999999999999999 765 77777 9999999999874 555777777653 567788775
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.34 E-value=2.8e-12 Score=150.97 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=50.8
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCC---cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~P---dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+.....+|||++||+.||++|. .+| +++|| ||||+|||+.++. .+.+.|..+.+. +.++|++|.
T Consensus 800 gq~~~~LSGGErQRV~LAraL~-----~~p~~p~LLIL-DEPTsGLD~~~~~-~L~~lL~~L~~~----G~TVIvI~H 866 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELR-----KRDTGRTLYIL-DEPTVGLHFEDVR-KLVEVLHRLVDR----GNTVIVIEH 866 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHT-----SCCCSSEEEEE-ESTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECC
T ss_pred cCCccCCCHHHHHHHHHHHHHh-----hCCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhc----CCEEEEEeC
Confidence 4456788999999999999998 655 57777 9999999999874 555777777653 567788775
No 88
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.32 E-value=1.7e-14 Score=142.85 Aligned_cols=170 Identities=11% Similarity=0.033 Sum_probs=90.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc----------ceeeeeehhhhhhhhc-
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT----------FRSGAVEQLRTHARRL- 469 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt----------~RigaveQl~~~~~~L- 469 (621)
.-|++|+|.+.+|+ +++|+||||||||||+++|+|++ | |.|.+ +.+. .++++++|.......+
T Consensus 11 ~~l~~isl~i~~G~--~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIY--PLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCC--CEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCC--EEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 35789999999999 99999999999999999999988 5 88888 5543 2367888765443322
Q ss_pred ----cc---ceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHH-----HHHHHhhhhcCCCcEEEEEeCC
Q 007024 470 ----QV---PIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPL-----MRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 470 ----~v---~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~L-----araL~~l~~~~~PdlILLVDEp 537 (621)
.+ .+....|+... ..+.++++.. ..-..-.+++||++|+..+ +++|. ..|++.+| |||
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~-~~i~~~l~~~---~~~il~~~lsggq~qR~~i~~~~~~~~ll-----~~~~~~~L-de~ 154 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLK-SEYDKAKEQN---KICLFEMNINGVKQLKKSTHIKNALYIFI-----KPPSTDVL-LSR 154 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEH-HHHHHHHHTT---CEEEEEECHHHHHHHTTCSSCCSCEEEEE-----ECSCHHHH-HHH
T ss_pred hccchhhhhhcccccCCCcH-HHHHHHHhCC---CcEEEEecHHHHHHHHHHhcCCCcEEEEE-----eCcCHHHH-HHH
Confidence 11 11111222222 2233333321 1112225779999999877 44444 56777776 999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCC---CCCCceEEEeccccccccchhHHHHhHH
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSP---NPQLIDGILLTKFDTIDDKVGAALSMVY 589 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~---~~~~it~IIlTK~De~~~~vG~~ls~~~ 589 (621)
++++|.... ..+.+.+..+.... .....+.|+++. | .+..+..+..++.
T Consensus 155 ~~~~d~~~~-~~i~~~l~~~~~~~~~~h~~~~d~iiv~~-~-~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 155 LLTRNTENQ-EQIQKRMEQLNIELHEANLLNFNLSIIND-D-LTLTYQQLKNYLL 206 (218)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHTTSCCSEEEECS-S-HHHHHHHHHHHHH
T ss_pred HHhcCCCCH-HHHHHHHHHHHHHHHhhcccCCCEEEECC-C-HHHHHHHHHHHHH
Confidence 999885432 12223333221110 013467777775 3 2233444444443
No 89
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.32 E-value=3.2e-12 Score=150.55 Aligned_cols=64 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCC---cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNP---DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~P---dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.||++|. .+| +++|| ||||+|||+.+.. .+.+.|..+... +.++|++|.
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~-----~~p~~p~lLIL-DEPTsGLD~~~~~-~l~~lL~~L~~~----G~TVIvisH 924 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQ-----KRSTGRTVYIL-DEPTTGLHFDDIR-KLLNVINGLVDK----GNTVIVIEH 924 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHS-----SCCCSSEEEEE-ESTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECC
T ss_pred cCccccCCHHHHHHHHHHHHHH-----hCCCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhC----CCEEEEEcC
Confidence 5667889999999999999999 765 77777 9999999998864 555777777653 567788775
No 90
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.28 E-value=9.8e-12 Score=131.36 Aligned_cols=148 Identities=24% Similarity=0.246 Sum_probs=92.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce-------------eeeeehhhhhhh
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-------------SGAVEQLRTHAR 467 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R-------------igaveQl~~~~~ 467 (621)
.+|+++++.+.+|+ +++|+||||||||||+++|++++.+++|+|.+.+.|+.. ++++.|..
T Consensus 43 ~~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~---- 116 (337)
T 2qm8_A 43 DLIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR---- 116 (337)
T ss_dssp HHHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT----
T ss_pred HHHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCc----
Confidence 46788899998888 999999999999999999999999999999999988742 22222221
Q ss_pred hcccceeecCCCCCH---HHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 468 RLQVPIFEKGYEKDP---AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 468 ~L~v~l~~~~~~~d~---~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
++........... .....+++..+...+++++++||+|-.+.... +. ...|++++|.+|..+.+.
T Consensus 117 --~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~----v~-----~~~d~vl~v~d~~~~~~~- 184 (337)
T 2qm8_A 117 --NAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA----VA-----DLTDFFLVLMLPGAGDEL- 184 (337)
T ss_dssp --TEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH----HH-----TTSSEEEEEECSCC-----
T ss_pred --ccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhh----HH-----hhCCEEEEEEcCCCcccH-
Confidence 1111000001111 12223333344557899999999997654332 23 577988887777544221
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+...+.. ..+.++++|+|..
T Consensus 185 ---~~i~~~i~~--------~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 185 ---QGIKKGIFE--------LADMIAVNKADDG 206 (337)
T ss_dssp -----CCTTHHH--------HCSEEEEECCSTT
T ss_pred ---HHHHHHHhc--------cccEEEEEchhcc
Confidence 111111111 2357888999964
No 91
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.25 E-value=1.5e-12 Score=136.24 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=78.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhh-----hhhcccceee-cCC-CCCH
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTH-----ARRLQVPIFE-KGY-EKDP 482 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~-----~~~L~v~l~~-~~~-~~d~ 482 (621)
+.+|+ +++|+||||||||||+++|+|++.+..|. .+++++.|...+ .+++.. .. .+. ....
T Consensus 87 ~~~g~--ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------~~v~~v~qd~~~~~~t~~e~~~~--~~~~g~~~~~d 154 (312)
T 3aez_A 87 RPVPF--IIGVAGSVAVGKSTTARVLQALLARWDHH--------PRVDLVTTDGFLYPNAELQRRNL--MHRKGFPESYN 154 (312)
T ss_dssp SCCCE--EEEEECCTTSCHHHHHHHHHHHHHTSTTC--------CCEEEEEGGGGBCCHHHHHHTTC--TTCTTSGGGBC
T ss_pred CCCCE--EEEEECCCCchHHHHHHHHHhhccccCCC--------CeEEEEecCccCCcccHHHHHHH--HHhcCCChHHH
Confidence 45677 99999999999999999999999987652 234444443322 222221 11 011 0111
Q ss_pred HHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 483 AIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 483 ~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
...+.+.++.+. .+. +..+-.+|||++|++.+++++. .+|+++|+ |||+..+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~-----~~p~ilIl-Dep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVV-----RHPDILIL-EGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEE-----CSCSEEEE-ECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhc-----cCCCEEEE-CCccccCCc
Confidence 234455666665 444 4667789999999999988888 89999998 999999863
No 92
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.25 E-value=2e-11 Score=130.36 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=61.4
Q ss_pred ccccccchhHHhHHHHHHHHHhh-hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKL-IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l-~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
..+.++|||++|++.|+++|+.. .-..+|+++|| ||||+|||+..+. .+.+.+..+.. .+.+++++|.-
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lll-DEpt~~LD~~~~~-~~~~~l~~l~~----~g~tvi~itH~---- 344 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFI-DEGFSSLDTENKE-KIASVLKELER----LNKVIVFITHD---- 344 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEE-ESCCTTSCHHHHH-HHHHHHHGGGG----SSSEEEEEESC----
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEE-eCCCccCCHHHHH-HHHHHHHHHHh----CCCEEEEEecc----
Confidence 35567999999999999998821 11258999988 9999999999874 44466776654 26778887752
Q ss_pred cchhHHHHhHHHhCCcEEEEecCCCC
Q 007024 579 DKVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 579 ~~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
... . ...-.|+++..|+-+
T Consensus 345 --~~~-~----~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 345 --REF-S----EAFDRKLRITGGVVV 363 (365)
T ss_dssp --HHH-H----TTCSCEEEEETTEEC
T ss_pred --hHH-H----HhCCEEEEEECCEEE
Confidence 111 1 223477888888654
No 93
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.24 E-value=4.1e-12 Score=133.92 Aligned_cols=92 Identities=17% Similarity=0.305 Sum_probs=72.7
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCC
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKD 481 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d 481 (621)
+++++++.+.+|+ +++|+||||||||||++.|+|++.|+.|.|.+.+.+.+... .+.+. +.++.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~------~~~~~--i~~~~------ 223 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK------HHKNY--TQLFF------ 223 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS------SCSSE--EEEEC------
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc------cchhE--EEEEe------
Confidence 4567788888999 99999999999999999999999999999999886532210 01111 11110
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV 539 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~ 539 (621)
. ||++++..|+++|. .+|+++++ |||++
T Consensus 224 ----------------------g--gg~~~r~~la~aL~-----~~p~ilil-dE~~~ 251 (330)
T 2pt7_A 224 ----------------------G--GNITSADCLKSCLR-----MRPDRIIL-GELRS 251 (330)
T ss_dssp ----------------------B--TTBCHHHHHHHHTT-----SCCSEEEE-CCCCS
T ss_pred ----------------------C--CChhHHHHHHHHhh-----hCCCEEEE-cCCCh
Confidence 0 88999999999999 99999999 99997
No 94
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.13 E-value=1.1e-10 Score=122.17 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=49.6
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..+..+|||++|++.||++|+.. ...+|+++|| ||||++||+..+. .+.+.+..+.. +.++|++|.-
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~-~~~~~~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~-----~~~vi~~tH~ 281 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALM-EIKPSPFYVL-DEVDSPLDDYNAE-RFKRLLKENSK-----HTQFIVITHN 281 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHT-TTSCCSEEEE-ESCCSSCCHHHHH-HHHHHHHHHTT-----TSEEEEECCC
T ss_pred CchhhCCHHHHHHHHHHHHHHHh-ccCCCCEEEE-eCCCCCCCHHHHH-HHHHHHHHhcC-----CCeEEEEECC
Confidence 44568899999999999999721 1146788888 9999999998764 44466766632 4567777764
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.12 E-value=1.9e-10 Score=117.27 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=68.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+|++++ +.+|+ +++|+||||||||||++.|++++.|+ +|+|.+.+.++ +++.|.. ..+ +...
T Consensus 15 ~vl~~i~--i~~g~--~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i---~~~~~~~-----~~~-v~q~--- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHK-----KSI-VNQR--- 78 (261)
T ss_dssp THHHHGG--GCSSE--EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCS-----SSE-EEEE---
T ss_pred HHHHHHh--hCCCC--EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc---eeecCCc-----cee-eeHH---
Confidence 4677887 67888 99999999999999999999999998 99999988764 2222210 000 0000
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
..+.+. ..-+..|+++|. .+|+++++ |||+ |+...
T Consensus 79 ---------------~~gl~~--------~~l~~~la~aL~-----~~p~illl-DEp~---D~~~~ 113 (261)
T 2eyu_A 79 ---------------EVGEDT--------KSFADALRAALR-----EDPDVIFV-GEMR---DLETV 113 (261)
T ss_dssp ---------------EBTTTB--------SCHHHHHHHHHH-----HCCSEEEE-SCCC---SHHHH
T ss_pred ---------------HhCCCH--------HHHHHHHHHHHh-----hCCCEEEe-CCCC---CHHHH
Confidence 001110 112688999999 89999998 9999 77654
No 96
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.12 E-value=8.2e-12 Score=130.30 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=77.4
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh-hcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR-RLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~-~L~v~l~~~~~~ 479 (621)
.+|+++++.+++|+ +++|+||||||||||++.|+|++ +|+|....... ..+++ .+..+ ++.+ ... .
T Consensus 114 ~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~---~~lf~-~ti~~~ni~~--~~~-~- 180 (305)
T 2v9p_A 114 NALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHK---SHFWL-ASLADTRAAL--VDD-A- 180 (305)
T ss_dssp HHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTT---SGGGG-GGGTTCSCEE--EEE-E-
T ss_pred hhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCc---ccccc-ccHHHHhhcc--Ccc-c-
Confidence 57899999999999 99999999999999999999998 79986432211 00111 12222 3322 110 0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
.. .+.+.+......+++ ...+|||++|| ||+|. .+|+++| |++||+...
T Consensus 181 -~~--~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll-----~~p~iLl-----Ts~LD~~~~ 229 (305)
T 2v9p_A 181 -TH--ACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQI-----KAPPLLV-----TSNIDVQAE 229 (305)
T ss_dssp -CH--HHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEE-----CCCCEEE-----EESSCSTTC
T ss_pred -cH--HHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHh-----CCCCEEE-----ECCCCHHHH
Confidence 11 223334331112334 56789999999 88888 9999888 899998764
No 97
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.11 E-value=7.2e-11 Score=121.35 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=46.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-EEEEccccc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDT 453 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-kV~I~~~Dt 453 (621)
...+|+++++.+.+|+ +++|+||||+||||++..|++.+.+..| +|.+.+.+.
T Consensus 21 g~~~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 21 GCTGINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp SCTTHHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CHHHHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3567899999999999 9999999999999999999999998866 887776553
No 98
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.07 E-value=1.5e-11 Score=120.12 Aligned_cols=158 Identities=20% Similarity=0.208 Sum_probs=78.4
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-----ceeeeeehhhhhhhhcc----
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-----FRSGAVEQLRTHARRLQ---- 470 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-----~RigaveQl~~~~~~L~---- 470 (621)
..++++ ..+.+|+ +++|+||||||||||+++|+|++....+.+.+.+.+. .++++++|.......+-
T Consensus 9 ~~~~~~--~~i~~Ge--i~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGR--VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp ------------CCC--EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred CcCCCC--CCCCCCC--EEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCC
Confidence 345666 4677999 9999999999999999999999852222111111111 23778888654433221
Q ss_pred cc----eee--cCCCCCHHHHHHHHHHHHhhcCCCccc-cccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC--
Q 007024 471 VP----IFE--KGYEKDPAIVAKEAIQEATRNGSDVVL-VDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-- 541 (621)
Q Consensus 471 v~----l~~--~~~~~d~~~ia~~al~~~~~~~~d~vl-iDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl-- 541 (621)
+. ++. ..|+...... .+.+.. ....++ .+..|....+......|. +=..+|++++| |||+.|+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~-~~~~~~----~~~~~~~l~~~gl~~~~~~~~~~lS--~l~~~p~~~~L-Dep~~~l~~ 156 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPV-RAAAAT----GVPVLIEVDLAGARAIKKTMPEAVT--VFLAPPSWQDL-QARLIGRGT 156 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHH-HHHHHH----TCCEEEECCHHHHHHHHHHCTTSEE--EEEECSCHHHH-HHHHHTTSC
T ss_pred ceeehhhcCchhhcCCcHHHH-HHHHHc----CCeEEEEeCHHHHHHHHHhcCCcEE--EEEECCCHHHH-HHHHHhcCC
Confidence 10 111 1122222221 111111 112211 344554433322222111 11157777777 9999998
Q ss_pred --CHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 542 --DAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 542 --D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
|+..+ ..+.+.+..+... .+.+.+++|.
T Consensus 157 ~~d~~~~-~~l~~~l~~l~~~---~g~tvi~vtH 186 (207)
T 1znw_A 157 ETADVIQ-RRLDTARIELAAQ---GDFDKVVVNR 186 (207)
T ss_dssp SCHHHHH-HHHHHHHHHHHGG---GGSSEEEECS
T ss_pred CCHHHHH-HHHHHHHHHHhhh---ccCcEEEECC
Confidence 45444 4455667776532 3678888885
No 99
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.04 E-value=2.8e-10 Score=134.22 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=87.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccceeeeeehhhhhhhhcccceeecCC
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~ 478 (621)
..++++|+|.+.+|+ +++|+||||+||||+|+.|+++.. .+.|. +..+...+++.++++ ...+++
T Consensus 660 ~~V~ndvsl~~~~g~--i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~--~vpa~~~~i~~~d~i---~~~ig~------- 725 (918)
T 3thx_B 660 QYVPNNTDLSEDSER--VMIITGPNMGGKSSYIKQVALITIMAQIGS--YVPAEEATIGIVDGI---FTRMGA------- 725 (918)
T ss_dssp SSCCEEEEECTTSCC--EEEEESCCCHHHHHHHHHHHHHHHHHHHTC--CBSSSEEEEECCSEE---EEEC---------
T ss_pred ceecccccccCCCCe--EEEEECCCCCchHHHHHHHHHHHHHhhcCc--cccchhhhhhHHHHH---HHhCCh-------
Confidence 357789999999999 999999999999999999987543 22221 011111223322211 000110
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 479 EKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 479 ~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
.+ ....-+...+++|++...++++ + .+|+++|| |||++|+|+.+....+..++..+.
T Consensus 726 --------~d--------~l~~~~stfs~em~~~~~il~~-a-----~~p~LlLL-DEP~~GlD~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 726 --------AD--------NIYKGRSTFMEELTDTAEIIRK-A-----TSQSLVIL-DELGRGTSTHDGIAIAYATLEYFI 782 (918)
T ss_dssp ------------------------CCHHHHHHHHHHHHHH-C-----CTTCEEEE-ESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred --------HH--------HHHHhHHHhhHHHHHHHHHHHh-c-----cCCCEEEE-eCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 0111223457888888877776 4 78999998 999999999988666656676665
Q ss_pred cCCCCCCceEEEecccccc
Q 007024 559 SSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 559 ~~~~~~~it~IIlTK~De~ 577 (621)
.. .+.+++++|..-+.
T Consensus 783 ~~---~g~tvl~vTH~~el 798 (918)
T 3thx_B 783 RD---VKSLTLFVTHYPPV 798 (918)
T ss_dssp HT---TCCEEEEECSCGGG
T ss_pred Hh---cCCeEEEEeCcHHH
Confidence 32 36788898886444
No 100
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.03 E-value=8.9e-10 Score=116.31 Aligned_cols=183 Identities=21% Similarity=0.225 Sum_probs=98.2
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccccee---eeeehhhhhhhhc----cccee
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---GAVEQLRTHARRL----QVPIF 474 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri---gaveQl~~~~~~L----~v~l~ 474 (621)
+++++++....+. +++|+|+|||||||+++.|++.+.+.+++|.+.+.|.++. |.+.......+.+ +..+.
T Consensus 45 ~~~~l~~~~~~~~--~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~ 122 (341)
T 2p67_A 45 LLDAIMPYCGNTL--RLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 (341)
T ss_dssp HHHHHGGGCSCSE--EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEE
T ss_pred HHHhCCcccCCCE--EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceee
Confidence 3445566655666 9999999999999999999999999999999999998542 1111111111111 11111
Q ss_pred ecCCC---CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH
Q 007024 475 EKGYE---KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN 551 (621)
Q Consensus 475 ~~~~~---~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~ 551 (621)
..... ........+.+..+...+++++++||+|-.+.... +. ...|.+++|.+|..+.+ . +.+.
T Consensus 123 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~----~~-----~~aD~vl~Vvd~~~~~~-~---~~l~ 189 (341)
T 2p67_A 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETE----VA-----RMVDCFISLQIAGGGDD-L---QGIK 189 (341)
T ss_dssp EECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH----HH-----TTCSEEEEEECC----------CCCC
T ss_pred cCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH----HH-----HhCCEEEEEEeCCccHH-H---HHHH
Confidence 00000 01111122233333456889999999995442221 23 67899999888865522 1 0110
Q ss_pred HHHHHhhcCCCCCCceEEEecccccccc-chhHHHHhH----HHh-------CCcEEEEe--cCCCCCcc
Q 007024 552 QKLADLSSSPNPQLIDGILLTKFDTIDD-KVGAALSMV----YVS-------GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 552 ~~L~~l~~~~~~~~it~IIlTK~De~~~-~vG~~ls~~----~~~-------g~PI~fvg--~Gq~v~DL 607 (621)
... . .....+++||+|.... .+-..+.-. ... ..|++.++ +|+++.+|
T Consensus 190 ~~~--~------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L 251 (341)
T 2p67_A 190 KGL--M------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEI 251 (341)
T ss_dssp HHH--H------HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHH
T ss_pred Hhh--h------cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHH
Confidence 000 0 0235799999998632 121111111 111 35677777 88887654
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.02 E-value=8.2e-10 Score=107.64 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=44.6
Q ss_pred ccccccccc-ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 400 IDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 400 ~~iL~dIs~-~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+..|+++.. .+.+|+ +++|+|||||||||++..|++.+.+.+++|.+.+.+.
T Consensus 9 ~~~Ld~~~~ggi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CHHHHGGGTTSEETTC--EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred chHHHHHhcCCCcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 455666665 677898 9999999999999999999999888899999887765
No 102
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.01 E-value=5.7e-10 Score=124.36 Aligned_cols=133 Identities=11% Similarity=-0.023 Sum_probs=89.8
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE-EEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHH
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV-MMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV-~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~ 487 (621)
.+.+|+ +++|+||||+|||||+..|++.+.+.+.++ ++...+.. .|+...+..+++ +..
T Consensus 277 ~i~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~-----~~l~~~~~~~g~---------~~~---- 336 (525)
T 1tf7_A 277 GFFKDS--IILATGATGTGKTLLVSRFVENACANKERAILFAYEESR-----AQLLRNAYSWGM---------DFE---- 336 (525)
T ss_dssp SEESSC--EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH-----HHHHHHHHTTSC---------CHH----
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH-----HHHHHHHHHcCC---------CHH----
Confidence 456899 999999999999999999999998876554 44444431 233333322222 111
Q ss_pred HHHHHHhhc-CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH-----HHHHHHHHHHHHhhcCC
Q 007024 488 EAIQEATRN-GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV-----DQLSKFNQKLADLSSSP 561 (621)
Q Consensus 488 ~al~~~~~~-~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~-----~q~~~f~~~L~~l~~~~ 561 (621)
+... .... -.+..+..+|||+++++.+++++. .+|+++++ | |++++|.. .+ ..+.+.+..+.+.
T Consensus 337 ~~~~-~g~~~~~~~~p~~LS~g~~q~~~~a~~l~-----~~p~llil-D-p~~~Ld~~~~~~~~~-~~i~~ll~~l~~~- 406 (525)
T 1tf7_A 337 EMER-QNLLKIVCAYPESAGLEDHLQIIKSEIND-----FKPARIAI-D-SLSALARGVSNNAFR-QFVIGVTGYAKQE- 406 (525)
T ss_dssp HHHH-TTSEEECCCCGGGSCHHHHHHHHHHHHHT-----TCCSEEEE-E-CHHHHTSSSCHHHHH-HHHHHHHHHHHHT-
T ss_pred HHHh-CCCEEEEEeccccCCHHHHHHHHHHHHHh-----hCCCEEEE-c-ChHHHHhhCChHHHH-HHHHHHHHHHHhC-
Confidence 1111 1111 124455678999999999999999 99999998 9 99999986 43 3455666666543
Q ss_pred CCCCceEEEeccc
Q 007024 562 NPQLIDGILLTKF 574 (621)
Q Consensus 562 ~~~~it~IIlTK~ 574 (621)
+++++++|..
T Consensus 407 ---g~tvilvsh~ 416 (525)
T 1tf7_A 407 ---EITGLFTNTS 416 (525)
T ss_dssp ---TCEEEEEEEC
T ss_pred ---CCEEEEEECc
Confidence 6677777754
No 103
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.01 E-value=5.8e-10 Score=131.84 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=84.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH-hhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+++|++|.+.+|+ +++|+||||+||||+|+.|+... ..+.|. +..++..+++.+.+ ++... +
T Consensus 650 ~v~ndisl~~~~g~--i~~ItGpNGsGKSTlLr~ial~~~~aq~G~--~vpa~~~~~~~~d~-----------i~~~i-g 713 (934)
T 3thx_A 650 FIPNDVYFEKDKQM--FHIITGPNMGGKSTYIRQTGVIVLMAQIGC--FVPCESAEVSIVDC-----------ILARV-G 713 (934)
T ss_dssp CCCEEEEEETTTBC--EEEEECCTTSSHHHHHHHHHHHHHHHHHTC--CBSEEEEEEECCSE-----------EEEEC-C
T ss_pred eecccceeecCCCe--EEEEECCCCCCHHHHHHHHHHHHHHHhcCC--ccccccccchHHHH-----------HHHhc-C
Confidence 35678999988888 99999999999999999996432 222220 01111112222111 11100 0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
. .+......|+++.+...+++.|.. ..+|+++|| |||++|+|+.+.......++..+..
T Consensus 714 ~-----------------~d~l~~~lStf~~e~~~~a~il~~---a~~~sLlLL-DEp~~GlD~~~~~~i~~~il~~l~~ 772 (934)
T 3thx_A 714 A-----------------GDSQLKGVSTFMAEMLETASILRS---ATKDSLIII-DELGRGTSTYDGFGLAWAISEYIAT 772 (934)
T ss_dssp --------------------------CHHHHHHHHHHHHHHH---CCTTCEEEE-ESCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred c-----------------hhhHHHhHhhhHHHHHHHHHHHHh---ccCCcEEEE-eCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 011223457777777777777731 278999888 9999999999876655666666654
Q ss_pred CCCCCCceEEEecccccc
Q 007024 560 SPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 560 ~~~~~~it~IIlTK~De~ 577 (621)
. .+.+++++|...+.
T Consensus 773 ~---~g~~vl~aTH~~el 787 (934)
T 3thx_A 773 K---IGAFCMFATHFHEL 787 (934)
T ss_dssp T---TCCEEEEEESCGGG
T ss_pred c---CCCEEEEEcCcHHH
Confidence 2 36778888886554
No 104
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.01 E-value=3.9e-10 Score=130.89 Aligned_cols=128 Identities=22% Similarity=0.210 Sum_probs=83.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+++|++|. |+ +++|+||||+||||+|+.|+|+.. ++.|.+. .....++|+++|+.. .+++
T Consensus 567 ~vl~disl~---g~--i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v--pa~~~~i~~v~~i~~---~~~~-------- 628 (765)
T 1ewq_A 567 FVPNDLEMA---HE--LVLITGPNMAGKSTFLRQTALIALLAQVGSFV--PAEEAHLPLFDGIYT---RIGA-------- 628 (765)
T ss_dssp CCCEEEEES---SC--EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCSEEEE---ECCC--------
T ss_pred eEeeeccCC---Cc--EEEEECCCCCChHHHHHHHHhhhhhcccCcee--ehhccceeeHHHhhc---cCCH--------
Confidence 467788887 78 999999999999999999999874 6766542 222234666655211 1111
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC---cCCCCHHHHHHHHHHHHHH
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA---LVGNDAVDQLSKFNQKLAD 556 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp---t~GlD~~~q~~~f~~~L~~ 556 (621)
.+.+....|+++.+...++++|. ...+|+++|| ||| |+++|.......+.+.+..
T Consensus 629 ------------------~d~l~~g~S~~~~e~~~la~il~---~a~~p~LlLL-DEpgrGTs~lD~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 629 ------------------SDDLAGGKSTFMVEMEEVALILK---EATENSLVLL-DEVGRGTSSLDGVAIATAVAEALHE 686 (765)
T ss_dssp ------------------------CCSHHHHHHHHHHHHHH---HCCTTEEEEE-ESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHhcccHHHHHHHHHHHHHH---hccCCCEEEE-ECCCCCCCCcCHHHHHHHHHHHHHh
Confidence 01112235778888888888773 1278998888 999 7778876543333344432
Q ss_pred hhcCCCCCCceEEEecccc
Q 007024 557 LSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 557 l~~~~~~~~it~IIlTK~D 575 (621)
.+.+++++|..-
T Consensus 687 -------~g~~vl~~TH~~ 698 (765)
T 1ewq_A 687 -------RRAYTLFATHYF 698 (765)
T ss_dssp -------HTCEEEEECCCH
T ss_pred -------CCCEEEEEeCCH
Confidence 266788888743
No 105
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.00 E-value=1.2e-09 Score=121.74 Aligned_cols=144 Identities=14% Similarity=0.078 Sum_probs=91.4
Q ss_pred cccccccccc-ccccCCceEEEEEecCCCCHHHHHHH--HHHhHhhcCcEEEEccccc--------ceeeeeehhhhhhh
Q 007024 399 SIDILRDVHA-AKEQRKPYVVVFVGVNGVGKSTNLAK--VAYWLLQHKVSVMMAACDT--------FRSGAVEQLRTHAR 467 (621)
Q Consensus 399 ~~~iL~dIs~-~i~~Gep~iiaLVGpNGvGKTTlLak--LAg~L~~~~GkV~I~~~Dt--------~RigaveQl~~~~~ 467 (621)
.+.+|++|++ .+++|+ +++|+||||||||||++. ++|++.|..|.|++.+.+. .++|++.|......
T Consensus 24 g~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 3678999999 999999 999999999999999999 6799999999999998774 13666666543211
Q ss_pred hcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC-----CC
Q 007024 468 RLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-----ND 542 (621)
Q Consensus 468 ~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G-----lD 542 (621)
+ +.+.. .+. . ....+ +.+.-+-......+..+|. ..+|+.+++ |||++. +|
T Consensus 102 ~--l~~~~-~~~-~-------------~~~~~--~l~~~~l~~~~~~~~~~LS----~g~~~~lil-De~t~~~~~~~lD 157 (525)
T 1tf7_A 102 K--LFILD-ASP-D-------------PEGQE--VVGGFDLSALIERINYAIQ----KYRARRVSI-DSVTSVFQQYDAS 157 (525)
T ss_dssp S--EEEEE-CCC-C-------------SSCCS--CCSSHHHHHHHHHHHHHHH----HHTCSEEEE-ECSTTTSTTTCCH
T ss_pred c--EEEEe-cCc-c-------------cchhh--hhcccCHHHHHHHHHHHHH----HcCCCEEEE-CCHHHHHHhcCCH
Confidence 1 11111 000 0 00001 1122222222233334443 367888888 999874 46
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 543 AVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 543 ~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+ ..+.+.+..+.+. +++++++|.
T Consensus 158 ~~~~-~~l~~ll~~l~~~----g~tvl~itH 183 (525)
T 1tf7_A 158 SVVR-RELFRLVARLKQI----GATTVMTTE 183 (525)
T ss_dssp HHHH-HHHHHHHHHHHHH----TCEEEEEEE
T ss_pred HHHH-HHHHHHHHHHHHC----CCEEEEEec
Confidence 6655 4455777777642 567777665
No 106
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.98 E-value=7.2e-10 Score=109.67 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=34.5
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHH--HhHhhcCcEEEEccccc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQHKVSVMMAACDT 453 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLA--g~L~~~~GkV~I~~~Dt 453 (621)
.+++|+ +++|+||||||||||++.|+ +.+.+.++.+.+.+.+.
T Consensus 26 gi~~G~--~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 26 GFPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp SEETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 567899 99999999999999999999 55466666666665443
No 107
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.97 E-value=6.4e-11 Score=123.09 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=78.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh-HhhcCcEEEEccccc------ceeeeeehhhhhhhhcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDT------FRSGAVEQLRTHARRLQVP 472 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~-L~~~~GkV~I~~~Dt------~RigaveQl~~~~~~L~v~ 472 (621)
..++++++|. ++|||+||||||||++.|+|. +.+..| |.+.+.++ ..++++.|.......+.+
T Consensus 11 ~~~l~~~~~~--------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv- 80 (301)
T 2qnr_A 11 KSVKKGFEFT--------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTV- 80 (301)
T ss_dssp -------CEE--------EEEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEE-
T ss_pred EEEEcCCCEE--------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcch-
Confidence 3467777774 599999999999999999987 777777 66544332 124555554322212211
Q ss_pred eeec-CCCC--CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC-CCCHHHHHH
Q 007024 473 IFEK-GYEK--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLS 548 (621)
Q Consensus 473 l~~~-~~~~--d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~-GlD~~~q~~ 548 (621)
... +++. ............+. ..++..+.++||+++|++.++++ ..++++|||+. |+|+.+.
T Consensus 81 -~Dt~g~~~~~~~~e~~~~l~~~l~-~~~~~~~~~~sgg~rqrv~~ara----------~~ll~ldePt~~~Ld~~~~-- 146 (301)
T 2qnr_A 81 -VDTPGYGDAINCRDCFKTIISYID-EQFERYLHDESGLNRRHIIDNRV----------HCCFYFISPFGHGLKPLDV-- 146 (301)
T ss_dssp -EEEC-----------CTTHHHHHH-HHHHHHHHHHTSSCCTTCCCCCC----------CEEEEEECSSSSSCCHHHH--
T ss_pred -hhhhhhhhhcCcHHHHHHHHHHHH-HHHHHHHHHhCHHhhhhhhhhhh----------hheeeeecCcccCCCHHHH--
Confidence 100 1100 00000001111110 11234566788888877544333 23555699987 5999873
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccccccccc-h----hHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDK-V----GAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~-v----G~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+.++.+.. . ....+|++|.|..... + -.+...+...++++..++ +| .+.+
T Consensus 147 ---~~l~~l~~---~-~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 147 ---AFMKAIHN---K-VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDE 203 (301)
T ss_dssp ---HHHHHHTT---T-SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC---------
T ss_pred ---HHHHHHHh---c-CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccH
Confidence 44555542 1 2347889999986321 1 234556677788866554 45 5543
No 108
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.96 E-value=3.2e-09 Score=112.62 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=100.2
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc---ceeeeeehhhhhhhhc----ccceeecCCCCCH---H
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT---FRSGAVEQLRTHARRL----QVPIFEKGYEKDP---A 483 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt---~RigaveQl~~~~~~L----~v~l~~~~~~~d~---~ 483 (621)
++++++|+|++||||||+++.|+..+...+.+|.+..+|+ ++.|++.+.+.....+ ++.+......... .
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4569999999999999999999999888888999999996 4455555544333222 2322222212211 2
Q ss_pred HHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007024 484 IVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNP 563 (621)
Q Consensus 484 ~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~ 563 (621)
....+++..+...+++++++||+|-.+... .+. ...|++++|.+|..+-+.. .+ ... ..
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~----~~~-----~~aD~vl~V~d~~~~~~~~--------~l---~~~-~~ 216 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV----AVA-----NMVDTFVLLTLARTGDQLQ--------GI---KKG-VL 216 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH----HHH-----TTCSEEEEEEESSTTCTTT--------TC---CTT-SG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH----HHH-----HhCCEEEEEECCCCCccHH--------HH---HHh-Hh
Confidence 333455555666789999999998443222 223 6789998888876653221 01 100 01
Q ss_pred CCceEEEeccccccccchhHH------HHhHHHh-------CCcEEEEe--cCCCCCccc
Q 007024 564 QLIDGILLTKFDTIDDKVGAA------LSMVYVS-------GAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 564 ~~it~IIlTK~De~~~~vG~~------ls~~~~~-------g~PI~fvg--~Gq~v~DL~ 608 (621)
....+++++|+|.. ...+.. -...... +.||+.++ +|+++.+|.
T Consensus 217 ~~p~ivVlNK~Dl~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~ 275 (355)
T 3p32_A 217 ELADIVVVNKADGE-HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELW 275 (355)
T ss_dssp GGCSEEEEECCCGG-GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHH
T ss_pred hcCCEEEEECCCCc-ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHH
Confidence 13568999999986 332221 1111111 57999987 788876653
No 109
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.96 E-value=1.1e-10 Score=117.14 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhccc----cee
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQV----PIF 474 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v----~l~ 474 (621)
...+|+++||++.+|. +++|+|||||||||+++.|++++ |.+.+. .--.+++++.|.. +...+.+ .+.
T Consensus 11 ~~~~l~~isl~i~~g~--iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPF--LIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKAL 82 (245)
T ss_dssp ------------CCSE--EEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHH
T ss_pred CceeecceeccCCCCE--EEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhhh
Confidence 3468999999999998 99999999999999999999977 222111 0012355555543 2111110 000
Q ss_pred ecCCC------CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH
Q 007024 475 EKGYE------KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA 543 (621)
Q Consensus 475 ~~~~~------~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~ 543 (621)
...+. .+. ..+.+.+..+ ....+..+-.+|+|+++++.+ +++. .+|+++|+ |+|....+.
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~L~~l-~~~~~~~~~~ls~g~~~r~~~-~~~~-----~~~~~lil-Dg~~~~~~~ 148 (245)
T 2jeo_A 83 KGQYNFDHPDAFDN-DLMHRTLKNI-VEGKTVEVPTYDFVTHSRLPE-TTVV-----YPADVVLF-EGILVFYSQ 148 (245)
T ss_dssp TTCCCTTSGGGBCH-HHHHHHHHHH-HTTCCEEECCEETTTTEECSS-CEEE-----CCCSEEEE-ECTTTTTSH
T ss_pred ccCCCCCCcccccH-HHHHHHHHHH-HCCCCeecccccccccCccCc-eEEe-----cCCCEEEE-eCccccccH
Confidence 00011 111 1223333322 233456667889999988755 2333 67888888 998777654
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.95 E-value=1.6e-10 Score=112.29 Aligned_cols=35 Identities=31% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+++|+||||||||||+++|+|++. +.| |.+.+.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence 899999999999999999999999 888 87766443
No 111
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.94 E-value=1.6e-09 Score=129.37 Aligned_cols=134 Identities=18% Similarity=0.120 Sum_probs=84.3
Q ss_pred cccccccccccc-------CCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceee-eeehhhhhhhhcccc
Q 007024 401 DILRDVHAAKEQ-------RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSG-AVEQLRTHARRLQVP 472 (621)
Q Consensus 401 ~iL~dIs~~i~~-------Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Rig-aveQl~~~~~~L~v~ 472 (621)
.+++|++|.+.+ |+ +++|+||||+||||+|+.| |++.+. -++| +|+|......... .
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~--i~~ItGpNgsGKSTlLr~i-Gl~~~~-----------aqiG~~Vpq~~~~l~v~d-~ 834 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAY--CVLVTGPNMGGKSTLMRQA-GLLAVM-----------AQMGCYVPAEVCRLTPID-R 834 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCC--EEEEECCTTSSHHHHHHHH-HHHHHH-----------HTTTCCEESSEEEECCCS-B
T ss_pred eEeeeeeeccccccccCCCCc--EEEEECCCCCChHHHHHHH-HHHHHH-----------hheeEEeccCcCCCCHHH-H
Confidence 477888888876 77 9999999999999999999 887642 1233 5555321000000 0
Q ss_pred eeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHH
Q 007024 473 IFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQ 552 (621)
Q Consensus 473 l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~ 552 (621)
++.. .+. ... + ..-+...+++|.+ +.++++++ .+|.++|| |||++|+|+.+....+..
T Consensus 835 I~~r-ig~--~d~----~--------~~~~stf~~em~~-~a~al~la-----~~~sLlLL-DEp~~Gtd~~dg~~~~~~ 892 (1022)
T 2o8b_B 835 VFTR-LGA--SDR----I--------MSGESTFFVELSE-TASILMHA-----TAHSLVLV-DELGRGTATFDGTAIANA 892 (1022)
T ss_dssp EEEE-CC-----------------------CHHHHHHHH-HHHHHHHC-----CTTCEEEE-ECTTTTSCHHHHHHHHHH
T ss_pred HHHH-cCC--HHH----H--------hhchhhhHHHHHH-HHHHHHhC-----CCCcEEEE-ECCCCCCChHHHHHHHHH
Confidence 1111 010 000 0 0011223555554 77777777 89999998 999999999986555667
Q ss_pred HHHHhhcCCCCCCceEEEeccc
Q 007024 553 KLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 553 ~L~~l~~~~~~~~it~IIlTK~ 574 (621)
++..+... .+.+++++|..
T Consensus 893 il~~L~~~---~g~~vl~~TH~ 911 (1022)
T 2o8b_B 893 VVKELAET---IKCRTLFSTHY 911 (1022)
T ss_dssp HHHHHHHT---SCCEEEEECCC
T ss_pred HHHHHHhc---CCCEEEEEeCC
Confidence 77777643 25677888874
No 112
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.93 E-value=3.4e-09 Score=112.41 Aligned_cols=218 Identities=14% Similarity=0.127 Sum_probs=116.7
Q ss_pred chHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc
Q 007024 315 GWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL 394 (621)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il 394 (621)
|+=....+.|.....-|-+++.. ..-.+....++++..-+.++++.+...+. .+.|.+....... ...+.++-
T Consensus 42 Gi~~~~~~kL~~ag~~t~~~~~~--~~~~~L~~~~~~s~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~--~~~~~~is 114 (349)
T 1pzn_A 42 GVGPATAEKLREAGYDTLEAIAV--ASPIELKEVAGISEGTALKIIQAARKAAN---LGTFMRADEYLKK--RATIGRIS 114 (349)
T ss_dssp TCCHHHHHHHHTTTCCSHHHHHT--CCHHHHHHHHCCCHHHHHHHHHHHHHHCS---TTSCEEHHHHHHH--HHTCCEEC
T ss_pred CCCHHHHHHHHHcCCCcHHHHHh--CCHHHHHhhcCCCHHHHHHHHHHHhhhcc---ccCCccHHHHHhh--hccCCeec
Confidence 33334555555544444433211 11223334578898889999998877652 1234443332211 01111111
Q ss_pred CCCCcccccccc-ccccccCCceEEEEEecCCCCHHHHHHHHHHhH--hhcC----cE-EEEcccccceeeeeehhhhhh
Q 007024 395 TPRRSIDILRDV-HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL--LQHK----VS-VMMAACDTFRSGAVEQLRTHA 466 (621)
Q Consensus 395 ~p~~~~~iL~dI-s~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L--~~~~----Gk-V~I~~~Dt~RigaveQl~~~~ 466 (621)
.....|+.+ .+.++.|+ ++.|+||||+||||++..|++.+ .|+. |+ |+|.+.++++ ..++..++
T Consensus 115 ---TG~~~LD~lL~ggi~~G~--i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~---~~~i~~i~ 186 (349)
T 1pzn_A 115 ---TGSKSLDKLLGGGIETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIA 186 (349)
T ss_dssp ---CSCHHHHHHHTSSEESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC---HHHHHHHH
T ss_pred ---CCCHHHHHHhcCCCCCCe--EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC---HHHHHHHH
Confidence 123345444 56788999 99999999999999999999987 4443 68 7777776642 12222223
Q ss_pred hhcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccc--cchhHHhHHHHHHHHHhhhhc-----CCCcEEEEEeCCcC
Q 007024 467 RRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVD--TAGRMQDNEPLMRALSKLIYL-----NNPDLVLFVGEALV 539 (621)
Q Consensus 467 ~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliD--tSGg~qqr~~LaraL~~l~~~-----~~PdlILLVDEpt~ 539 (621)
+.+++ +... +++ + ..+.+ .++++.+.+.+++++. .. .+|+++++ |||++
T Consensus 187 q~~~~---------~~~~----v~~-----n--i~~~~~~~~~~~~~~l~~~~~~~---~~lS~G~~~~~llIl-Ds~ta 242 (349)
T 1pzn_A 187 QNRGL---------DPDE----VLK-----H--IYVARAFNSNHQMLLVQQAEDKI---KELLNTDRPVKLLIV-DSLTS 242 (349)
T ss_dssp HTTTC---------CHHH----HGG-----G--EEEEECCSHHHHHHHHHHHHHHH---HHSSSSSSCEEEEEE-ETSST
T ss_pred HHcCC---------CHHH----Hhh-----C--EEEEecCChHHHHHHHHHHHHHH---HHhccccCCCCEEEE-eCchH
Confidence 22222 1111 000 0 01111 1344555555555444 22 57888888 99999
Q ss_pred CCCHHH--------H---HHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 540 GNDAVD--------Q---LSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 540 GlD~~~--------q---~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
++|+.. . ...+...|..++. ..++++++++..
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~---~~~~tvii~~h~ 285 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLAN---LYDIAVFVTNQV 285 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHH---HTTCEEEEEEEC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHH---HcCcEEEEEccc
Confidence 998741 1 2233334444433 236677777664
No 113
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.92 E-value=3.3e-09 Score=112.49 Aligned_cols=137 Identities=22% Similarity=0.289 Sum_probs=76.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce---eeeeehhhhhhhhccc--ceeec---------CCCCC
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR---SGAVEQLRTHARRLQV--PIFEK---------GYEKD 481 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R---igaveQl~~~~~~L~v--~l~~~---------~~~~d 481 (621)
.+++|+|++|||||||++.|++.+.+.+++|.+.+.|++. .|++.+.+...+.++. ..+.. +...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr~ 154 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTRT 154 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchHH
Confidence 4999999999999999999999999999999999999864 2333333332222221 01100 01111
Q ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC
Q 007024 482 PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP 561 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~ 561 (621)
..+++..+...+++++++||+|-.+... .+. ...|++++|.+|..+.+.. .+.. .+.
T Consensus 155 ----~~~~~~~~~~~~~~~iliDT~Gi~~~~~----~l~-----~~~d~vl~V~d~~~~~~~~----~i~~---~il--- 211 (349)
T 2www_A 155 ----TNEAILLCEGAGYDIILIETVGVGQSEF----AVA-----DMVDMFVLLLPPAGGDELQ----GIKR---GII--- 211 (349)
T ss_dssp ----HHHHHHHHHHTTCSEEEEECCCC--CHH----HHH-----TTCSEEEEEECCC-------------------C---
T ss_pred ----HHHHHHhhccCCCCEEEEECCCcchhhh----hHH-----hhCCEEEEEEcCCcchhHH----HhHH---HHH---
Confidence 1222333345688999999999543322 233 5789998888887664321 1111 111
Q ss_pred CCCCceEEEecccccc
Q 007024 562 NPQLIDGILLTKFDTI 577 (621)
Q Consensus 562 ~~~~it~IIlTK~De~ 577 (621)
.....++++|+|..
T Consensus 212 --~~~~ivVlNK~Dl~ 225 (349)
T 2www_A 212 --EMADLVAVTKSDGD 225 (349)
T ss_dssp --CSCSEEEECCCSGG
T ss_pred --hcCCEEEEeeecCC
Confidence 12468999999986
No 114
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.89 E-value=2.7e-09 Score=104.16 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=34.0
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhh-------cCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-------HKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-------~~GkV~I~~~Dt 453 (621)
+++|+ +++|+||||||||||++.|++.+.+ .++.|++.+.+.
T Consensus 22 i~~G~--~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 22 IETQA--ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp EESSE--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCc--EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 45888 9999999999999999999997665 344666666554
No 115
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.88 E-value=1e-08 Score=107.99 Aligned_cols=68 Identities=15% Similarity=0.026 Sum_probs=46.1
Q ss_pred cccccchhHHhHHHHHHHHHhh-hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 501 VLVDTAGRMQDNEPLMRALSKL-IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 501 vliDtSGg~qqr~~LaraL~~l-~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
.+..+|||++|++.|++.|+-. .-..+|+++|| ||||+|||+..+. .+.+.|..+... +.+++++|.-
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~~----~~~vi~~sH~ 313 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLIL-DEPTPYLDEERRR-KLITIMERYLKK----IPQVILVSHD 313 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEE-ECCCTTCCHHHHH-HHHHHHHHTGGG----SSEEEEEESC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEE-ECCCCCCCHHHHH-HHHHHHHHHHhc----CCEEEEEECh
Confidence 4567899999966555433311 01178999888 9999999998864 444666666432 4567777763
No 116
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.86 E-value=9.3e-09 Score=104.84 Aligned_cols=141 Identities=9% Similarity=0.034 Sum_probs=78.0
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc----------CcEEEEcccccceeeeeehhhhhhhhcccceeecCC
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH----------KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGY 478 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~----------~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~ 478 (621)
-+.+|+ +++|+||||+||||++..|++.+..- ++.|.+....-. ..++......++..+
T Consensus 26 gl~~G~--i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~----~~~~~~r~~~~g~~~----- 94 (279)
T 1nlf_A 26 NMVAGT--VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP----PTAIHHRLHALGAHL----- 94 (279)
T ss_dssp TEETTS--EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC----HHHHHHHHHHHHTTS-----
T ss_pred CccCCC--EEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC----HHHHHHHHHHHHhhc-----
Confidence 356888 99999999999999999999876531 233332221100 011111111112111
Q ss_pred CCCHHHHHHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC--CCCHHH--HHHHHHHH
Q 007024 479 EKDPAIVAKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV--GNDAVD--QLSKFNQK 553 (621)
Q Consensus 479 ~~d~~~ia~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~--GlD~~~--q~~~f~~~ 553 (621)
.. .....+++.+..... +..+..+|+++.+ +++++. .+|+++++ |||++ ++|... ....+.+.
T Consensus 95 --~~-~~~~~~~~~l~l~~~~~~~~~~ls~g~~~---~i~~l~-----~~~~livl-De~~~~~~~d~~~~~~~~~~~~~ 162 (279)
T 1nlf_A 95 --SA-EERQAVADGLLIQPLIGSLPNIMAPEWFD---GLKRAA-----EGRRLMVL-DTLRRFHIEEENASGPMAQVIGR 162 (279)
T ss_dssp --CH-HHHHHHHHHEEECCCTTSCCCTTSHHHHH---HHHHHH-----TTCSEEEE-ECGGGGCCSCTTCHHHHHHHHHH
T ss_pred --Ch-hhhhhccCceEEeecCCCCcccCCHHHHH---HHHHhc-----CCCCEEEE-CCHHHhcCCCcCchHHHHHHHHH
Confidence 11 112223333332222 3345556888754 345666 67998888 99999 888632 22344455
Q ss_pred HHHhhcCCCCCCceEEEecccc
Q 007024 554 LADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 554 L~~l~~~~~~~~it~IIlTK~D 575 (621)
|..++.. .++++|+++..-
T Consensus 163 L~~l~~~---~g~tvi~i~H~~ 181 (279)
T 1nlf_A 163 MEAIAAD---TGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHH---HCCEEEEEEEC-
T ss_pred HHHHHHH---cCCEEEEEecCC
Confidence 6665432 367778877643
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.85 E-value=4.4e-09 Score=122.72 Aligned_cols=136 Identities=20% Similarity=0.170 Sum_probs=80.8
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCC
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYE 479 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~ 479 (621)
.+++++++. .+|+ +++|+||||+||||+|+.|+|+.. .+.|.. ......+++.++|+.. .+++ .
T Consensus 596 ~vlndisl~-~~g~--i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~--vpa~~~~i~~~~~i~~---~~~~-------~ 660 (800)
T 1wb9_A 596 FIANPLNLS-PQRR--MLIITGPNMGGKSTYMRQTALIALMAYIGSY--VPAQKVEIGPIDRIFT---RVGA-------A 660 (800)
T ss_dssp CCCEEEEEC-SSSC--EEEEECCTTSSHHHHHHHHHHHHHHHTTTCC--BSSSEEEECCCCEEEE---EEC---------
T ss_pred eeeeccccc-CCCc--EEEEECCCCCChHHHHHHHHHHHHHHhcCcc--cchhcccceeHHHHHh---hCCH-------H
Confidence 467889998 7788 999999999999999999999754 333311 1112234555554211 1111 0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhc
Q 007024 480 KDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSS 559 (621)
Q Consensus 480 ~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~ 559 (621)
+ .+ . .-+...++++.+...+ ..+ ..+|+++|| |||++|+|+.+....+...+..+.+
T Consensus 661 -d--~l-----~--------~~~stf~~e~~~~~~i-l~~-----a~~psLlLL-DEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 661 -D--DL-----A--------SGRSTFMVEMTETANI-LHN-----ATEYSLVLM-DEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------CHHHHHHHHHH-HHH-----CCTTEEEEE-ESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred -H--HH-----H--------hhhhhhhHHHHHHHHH-HHh-----ccCCCEEEE-ECCCCCCChhHHHHHHHHHHHHHHh
Confidence 0 00 0 0011124445432222 122 378888888 9999999988776555566766654
Q ss_pred CCCCCCceEEEecccccc
Q 007024 560 SPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 560 ~~~~~~it~IIlTK~De~ 577 (621)
. .+.+++++|..-+.
T Consensus 718 ~---~g~~vl~~TH~~el 732 (800)
T 1wb9_A 718 K---IKALTLFATHYFEL 732 (800)
T ss_dssp T---TCCEEEEECSCGGG
T ss_pred c---cCCeEEEEeCCHHH
Confidence 2 26678888875443
No 118
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.80 E-value=1.1e-08 Score=108.75 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.9
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAA 450 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~ 450 (621)
...+|+ +++|+||||||||||++.|++++.+. ++.|....
T Consensus 119 ~~~~~g--~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 119 SDVPRG--LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHCSSE--EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HhCCCC--EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 334666 99999999999999999999999987 56665443
No 119
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.80 E-value=1.1e-09 Score=103.54 Aligned_cols=50 Identities=18% Similarity=0.060 Sum_probs=46.0
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+++++||.+.+|+ +++|+||||||||||++.|+|++ |..|+|.+.+.++
T Consensus 21 ~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 21 FAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred HHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 36778999999999 99999999999999999999999 9999999988776
No 120
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.79 E-value=5.1e-09 Score=111.07 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=46.5
Q ss_pred ccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 399 SIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 399 ~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
.+.+|+++ |.+.+|+ +++|+||||||||||+++|+|++.++.|.|.+.|.+
T Consensus 58 g~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp SCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred CCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 35678888 9999999 999999999999999999999999999999888865
No 121
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.77 E-value=7.6e-09 Score=113.05 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=46.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~ 451 (621)
..+|+++ |.+.+|+ +++|+||||||||||+++|+|++.++.|.|.+.|.
T Consensus 145 ~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~ 193 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE 193 (438)
T ss_dssp CHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred ceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence 5688899 9999999 99999999999999999999999999999999987
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=116.81 Aligned_cols=168 Identities=14% Similarity=0.101 Sum_probs=82.7
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc--EEEEccccc---ceeeeeehhhhhhhhccccee
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMAACDT---FRSGAVEQLRTHARRLQVPIF 474 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G--kV~I~~~Dt---~RigaveQl~~~~~~L~v~l~ 474 (621)
..++++++|. ++|||+||||||||++.|+|...+..+ .+.+....+ ..++++.|.......+.+ .
T Consensus 24 ~~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv--~ 93 (418)
T 2qag_C 24 KSVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTI--V 93 (418)
T ss_dssp TTCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEE--E
T ss_pred EEEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceee--e
Confidence 4577888774 599999999999999999998764322 111111112 125555554322211211 1
Q ss_pred ec-CCCC--CHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCc--EEEEEeCCc-CCCCHHHHHH
Q 007024 475 EK-GYEK--DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEAL-VGNDAVDQLS 548 (621)
Q Consensus 475 ~~-~~~~--d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd--lILLVDEpt-~GlD~~~q~~ 548 (621)
.. +++. +.......+..++.. -+...+++++.|++++. .+|+ ++|++|||| .++|+.+.
T Consensus 94 Dt~g~~~~~~~~~~~~~i~~~i~~--------~~~~~l~qr~~IaRal~-----~d~~~~vlL~ldePt~~~L~~~d~-- 158 (418)
T 2qag_C 94 DTPGFGDAVDNSNCWQPVIDYIDS--------KFEDYLNAESRVNRRQM-----PDNRVQCCLYFIAPSGHGLKPLDI-- 158 (418)
T ss_dssp ECC-----------CHHHHHHHHH--------HHHHHTTTSCC-CCCCC-----CCC-CCEEEEECCC-CCSCCHHHH--
T ss_pred echhhhhhccchhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhc-----cCCCeeEEEEEecCcccCCCHHHH--
Confidence 00 1110 000000111111110 11233455666677665 6776 345559999 69999873
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccccccccc-h----hHHHHhHHHhCCcEEEEe
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDDK-V----GAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~-v----G~~ls~~~~~g~PI~fvg 599 (621)
..+..+.. ....++|++|+|..... + -.+...+...++|+.+++
T Consensus 159 ---~~lk~L~~----~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~s 207 (418)
T 2qag_C 159 ---EFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 207 (418)
T ss_dssp ---HHHHHHTT----TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred ---HHHHHHhc----cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCC
Confidence 34444442 23458899999987321 1 223445566788876655
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.75 E-value=7.5e-09 Score=109.71 Aligned_cols=147 Identities=20% Similarity=0.210 Sum_probs=83.8
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc--c--ceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--T--FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D--t--~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
.+..++|+|++|||||||++.|++... .+.+.. + ..++.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~------~~~~~~~~t~~~~~~~~~----------------------------- 210 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP------EIASYPFTTRGINVGQFE----------------------------- 210 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC------EEECCTTCSSCEEEEEEE-----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------ccCCCCCeeeceeEEEEE-----------------------------
Confidence 345999999999999999999976431 111100 0 0011000
Q ss_pred HHHHhhcCCCccccccchhHHhH----HHH-HHHHHhhhhcCCCcEEEEE-e-CCcCCCCHHHHHHHHHHHHHHhhcCCC
Q 007024 490 IQEATRNGSDVVLVDTAGRMQDN----EPL-MRALSKLIYLNNPDLVLFV-G-EALVGNDAVDQLSKFNQKLADLSSSPN 562 (621)
Q Consensus 490 l~~~~~~~~d~vliDtSGg~qqr----~~L-araL~~l~~~~~PdlILLV-D-Ept~GlD~~~q~~~f~~~L~~l~~~~~ 562 (621)
..+..+.++||+|..... ..+ .+.+..+. ..++.+|+| | ++..+++...+...+..+.. ...
T Consensus 211 -----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~-~~~--- 279 (357)
T 2e87_A 211 -----DGYFRYQIIDTPGLLDRPISERNEIEKQAILALR--YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-EFK--- 279 (357)
T ss_dssp -----ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG--GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH-HTT---
T ss_pred -----ecCceEEEEeCCCccccchhhhhHHHHHHHHHHH--hcCCEEEEEEeCCccccCCHHHHHHHHHHHHH-hcC---
Confidence 012245677777753211 001 11122111 345666554 4 45566788877655543332 221
Q ss_pred CCCceEEEeccccccccchh--HHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 563 PQLIDGILLTKFDTIDDKVG--AALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 563 ~~~it~IIlTK~De~~~~vG--~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
.....+++||+|.. .... .+...+...+.|+++++ +|+++.+|.
T Consensus 280 -~~piilV~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 280 -DLPFLVVINKIDVA-DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp -TSCEEEEECCTTTC-CHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHH
T ss_pred -CCCEEEEEECcccC-ChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHH
Confidence 13457899999987 3322 35566667889999999 899887754
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.73 E-value=2.8e-10 Score=110.67 Aligned_cols=120 Identities=20% Similarity=0.136 Sum_probs=64.3
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQ 491 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~ 491 (621)
+|+ +++|+|||||||||+++.|++++.+ .|.+...|.+-... ..+ +..++..+.+ ......+. ..+.++++
T Consensus 5 ~~~--~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~-~~~-~~~~~~~~~~-~~~~~~~~-~~~~~~l~ 75 (211)
T 3asz_A 5 KPF--VIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDL-GHL-PLEERLRVNY-DHPDAFDL-ALYLEHAQ 75 (211)
T ss_dssp CCE--EEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCC-TTS-CHHHHHHSCT-TSGGGBCH-HHHHHHHH
T ss_pred CcE--EEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCc-ccc-cHHHhcCCCC-CChhhhhH-HHHHHHHH
Confidence 555 9999999999999999999999876 34444444321000 000 1111111111 00001122 23344555
Q ss_pred HHhhcCC-CccccccchhHHh----HHHHHHHHHhhhhcCCCcEEEEEeCCcCC-------CCHHHH
Q 007024 492 EATRNGS-DVVLVDTAGRMQD----NEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQ 546 (621)
Q Consensus 492 ~~~~~~~-d~vliDtSGg~qq----r~~LaraL~~l~~~~~PdlILLVDEpt~G-------lD~~~q 546 (621)
.+..... +....++++|++. ++.+++++. .+|.++++ |||+.+ +|+...
T Consensus 76 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li-----~~~~ll~~-de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 76 ALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVI-----LEGILVLY-PKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp HHHTTCCEEECCEETTTTEECSSCEEECCCSEEE-----EESTTTTS-SHHHHTTCSEEEEEECCHH
T ss_pred HHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEE-----Eeehhhcc-CHHHHHhcCEEEEEeCCHH
Confidence 5544332 4567888988753 333333333 45555555 788887 776544
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.73 E-value=2.9e-09 Score=113.10 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=40.1
Q ss_pred ccccccccccc--CCceEEEEEecCCCCHHHHHHHHHHhHhhcC----cEEEE
Q 007024 402 ILRDVHAAKEQ--RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK----VSVMM 448 (621)
Q Consensus 402 iL~dIs~~i~~--Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~----GkV~I 448 (621)
+...|++.+.+ |+ .++|+||||||||||++.|+|++.+.. |+|.+
T Consensus 157 ~~~~v~~~v~~~lg~--k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 157 YWKFIPKEARPFFAK--TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGGSCTTTGGGTCE--EEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ChhhCCHHHHHhhhC--eEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 44578888988 98 999999999999999999999999988 77765
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.71 E-value=4.1e-08 Score=104.96 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=36.1
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACD 452 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~D 452 (621)
+.+|+ +++|+||||||||||++.|++++.++ +|+|.+.+.+
T Consensus 133 ~~~g~--~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 133 HRKMG--LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp TSSSE--EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred hcCCC--EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 44777 99999999999999999999999998 8999877644
No 127
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.63 E-value=3.9e-08 Score=95.34 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=71.8
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc-ceeeeeehhhhhhhhcccceeecCCCCCHHHHHH
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT-FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt-~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~ 487 (621)
-+.+|+ +++|+||||+||||++..|++ ..++.|.+.+.+. +. ..++....+.++ .+...
T Consensus 16 gi~~G~--~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~---~~~~~~~~~~~~---------~~~~~--- 75 (220)
T 2cvh_A 16 GFAPGV--LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFS---PERLVQMAETRG---------LNPEE--- 75 (220)
T ss_dssp SBCTTS--EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCC---HHHHHHHHHTTT---------CCHHH---
T ss_pred CCcCCE--EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCC---HHHHHHHHHhcC---------CChHH---
Confidence 456888 999999999999999999999 4456666655432 11 011212221111 11211
Q ss_pred HHHHHHhhcCCCccccccchhHHh--HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH-------HHHHHHHHHHHhh
Q 007024 488 EAIQEATRNGSDVVLVDTAGRMQD--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD-------QLSKFNQKLADLS 558 (621)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~qq--r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~-------q~~~f~~~L~~l~ 558 (621)
.+. ...+.+.++++++ ....++++. .. +|+++++ |||++.+|... ....+.+.|..++
T Consensus 76 -~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---~~-~~~llii-D~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~ 142 (220)
T 2cvh_A 76 -ALS-------RFILFTPSDFKEQRRVIGSLKKTV---DS-NFALVVV-DSITAHYRAEENRSGLIAELSRQLQVLLWIA 142 (220)
T ss_dssp -HHH-------HEEEECCTTTSHHHHHHHHHHHHC---CT-TEEEEEE-ECCCCCTTGGGGSSTTHHHHHHHHHHHHHHH
T ss_pred -Hhh-------cEEEEecCCHHHHHHHHHHHHHHh---hc-CCCEEEE-cCcHHHhhhcCchHHHHHHHHHHHHHHHHHH
Confidence 111 1233455555443 344444554 11 5888887 99999998632 1122223344444
Q ss_pred cCCCCCCceEEEeccc
Q 007024 559 SSPNPQLIDGILLTKF 574 (621)
Q Consensus 559 ~~~~~~~it~IIlTK~ 574 (621)
.. .++++++++..
T Consensus 143 ~~---~~~~vi~~~h~ 155 (220)
T 2cvh_A 143 RK---HNIPVIVINQV 155 (220)
T ss_dssp HH---HTCCEEEEECS
T ss_pred HH---cCCEEEEEeeE
Confidence 32 25667777765
No 128
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.61 E-value=2.4e-08 Score=96.07 Aligned_cols=145 Identities=14% Similarity=0.056 Sum_probs=73.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH-----hhcCcEEEEcc-------cccce-eeeee-------
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-----LQHKVSVMMAA-------CDTFR-SGAVE------- 460 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-----~~~~GkV~I~~-------~Dt~R-igave------- 460 (621)
.++++ |.+.+|. .++|+|+||||||||++.|+|.. .++.|.+.+.+ ..+.. .|...
T Consensus 16 ~~l~~--~~~~~~~--~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 91 (210)
T 1pui_A 16 PDIRH--LPSDTGI--EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEM 91 (210)
T ss_dssp SSGGG--SSCSCSE--EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CC
T ss_pred CCHhH--CCCCCCc--EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHH
Confidence 45666 6666777 99999999999999999999876 66666554322 11100 12110
Q ss_pred --hhh----hhhh---hcc-cc-eeecCCCCCHHHHHHHHHHHHhhcCCCccc----ccc-chhHHhH-HHHHHHHHhhh
Q 007024 461 --QLR----THAR---RLQ-VP-IFEKGYEKDPAIVAKEAIQEATRNGSDVVL----VDT-AGRMQDN-EPLMRALSKLI 523 (621)
Q Consensus 461 --Ql~----~~~~---~L~-v~-l~~~~~~~d~~~ia~~al~~~~~~~~d~vl----iDt-SGg~qqr-~~LaraL~~l~ 523 (621)
+.+ .+.+ ... +- ++.......... .+....+...+...++ +|. +++++++ ...++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~--- 166 (210)
T 1pui_A 92 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV--- 166 (210)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH---
Confidence 111 1111 111 11 111111112211 1222222233333222 354 7888776 67777777
Q ss_pred hcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 524 YLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 524 ~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
.+|...++ +||++++|.......+ +.+..+.
T Consensus 167 --~~~~~~~~-~~~~Sal~~~~~~~l~-~~l~~~~ 197 (210)
T 1pui_A 167 --LAFNGDVQ-VETFSSLKKQGVDKLR-QKLDTWF 197 (210)
T ss_dssp --GGGCSCEE-EEECBTTTTBSHHHHH-HHHHHHH
T ss_pred --HhcCCCCc-eEEEeecCCCCHHHHH-HHHHHHH
Confidence 56666666 9999999987764444 4555444
No 129
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.60 E-value=2.8e-07 Score=87.25 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=29.2
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G 444 (621)
.+.+|+ .++|+||||+||||+++.|++.+.+..|
T Consensus 34 ~~~~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 34 NPEEGK--GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CGGGCC--EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cccCCC--EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 344677 9999999999999999999999986555
No 130
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.60 E-value=1.3e-08 Score=115.52 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=28.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I~~~Dt 453 (621)
.++|||||||||||+|+.|+|++.| .+|.|.+.+.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVL 84 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEE
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEE
Confidence 5999999999999999999999888 799999988774
No 131
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.59 E-value=7.8e-08 Score=104.52 Aligned_cols=179 Identities=15% Similarity=0.081 Sum_probs=88.4
Q ss_pred ccccccccccCCceE--EEEEecCCCCHHHHHHHHHHhHhhcCcEEEE-ccccc-ceeeeeehhhhhhhhccc-ceeecC
Q 007024 403 LRDVHAAKEQRKPYV--VVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDT-FRSGAVEQLRTHARRLQV-PIFEKG 477 (621)
Q Consensus 403 L~dIs~~i~~Gep~i--iaLVGpNGvGKTTlLakLAg~L~~~~GkV~I-~~~Dt-~RigaveQl~~~~~~L~v-~l~~~~ 477 (621)
|++++|.+.+|+ + ++||||||||||||++.|+|+.. .+..+.- ....+ .+++++.|...+...+.+ .....+
T Consensus 30 L~~vsl~i~~Ge--i~~vaLvG~nGaGKSTLln~L~G~~l-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 30 DQLVNKSVSQGF--CFNILCVGETGLGKSTLMDTLFNTKF-EGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp HHHHHHSCC-CC--EEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred cCCCceEecCCC--eeEEEEECCCCCCHHHHHHHHhCccc-cCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence 889999999999 8 99999999999999999999742 1111110 00111 247788876543222211 000001
Q ss_pred CCCCHH-----------HHHHHHHHHH-hhc----C-CC-------ccccccchh-HHhHHHHHHHHHhhhhcCCCcEEE
Q 007024 478 YEKDPA-----------IVAKEAIQEA-TRN----G-SD-------VVLVDTAGR-MQDNEPLMRALSKLIYLNNPDLVL 532 (621)
Q Consensus 478 ~~~d~~-----------~ia~~al~~~-~~~----~-~d-------~vliDtSGg-~qqr~~LaraL~~l~~~~~PdlIL 532 (621)
...+.. ....+.+... ... . .| +.++|+..+ ...++.++++|. .++.+|+
T Consensus 107 ~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-----~~~~vI~ 181 (427)
T 2qag_B 107 DQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-----SKVNIIP 181 (427)
T ss_dssp C-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-----SCSEEEE
T ss_pred hccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-----hCCCEEE
Confidence 111110 1111122211 111 0 11 112454333 344577777776 6777776
Q ss_pred EEeCCcCCCCHHHHHHHHHHHHHH-hhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEEEe
Q 007024 533 FVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 533 LVDEpt~GlD~~~q~~~f~~~L~~-l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~fvg 599 (621)
+ ++|+..+.+.... .|.+.+.. +.. .++.++.++--|+..... +-.....+|...||
T Consensus 182 V-i~KtD~Lt~~E~~-~l~~~I~~~L~~----~gi~I~~is~~d~~~~~~----~~~~~~~~PFavvg 239 (427)
T 2qag_B 182 I-IAKADAISKSELT-KFKIKITSELVS----NGVQIYQFPTDDESVAEI----NGTMNAHLPFAVIG 239 (427)
T ss_dssp E-ESCGGGSCHHHHH-HHHHHHHHHHBT----TBCCCCCCC-----CCSH----HHHHTTC-CCBCCC
T ss_pred E-EcchhccchHHHH-HHHHHHHHHHHH----cCCcEEecCCCchhHHHH----HhhhcCCCCeEEEC
Confidence 6 9999999876644 44455554 544 366667777544432122 22223556755554
No 132
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.54 E-value=5.2e-08 Score=103.69 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
++++++++.+.+|+ +++|+||||||||||++.|++++.++.|.|.+.+..
T Consensus 163 ~~~~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~ 212 (361)
T 2gza_A 163 DYMSFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP 212 (361)
T ss_dssp CHHHHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred HHHHHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence 35678899999999 999999999999999999999999999999998654
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.52 E-value=2.8e-07 Score=90.62 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=33.0
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHh--Hhh-----cCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW--LLQ-----HKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~--L~~-----~~GkV~I~~~Dt 453 (621)
+++|+ +++|+||||+||||++..|++. +.+ .++.+++.+.+.
T Consensus 21 i~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 21 IETGS--ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred CcCCe--EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 45788 9999999999999999999984 444 455666666553
No 134
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.50 E-value=1.1e-06 Score=93.57 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=54.3
Q ss_pred ccchhHHhHHHHHHHHHh--hhh--cCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccccc
Q 007024 504 DTAGRMQDNEPLMRALSK--LIY--LNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDD 579 (621)
Q Consensus 504 DtSGg~qqr~~LaraL~~--l~~--~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~ 579 (621)
.+||||+|++.|+++|+. ++. ..+|+++|| |||+++||+..+.. +.+.+..+. .+.|++|..+.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLL-DEp~s~LD~~~~~~-l~~~l~~~~-------qt~i~~th~~~--- 332 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLL-DDFTAELDPHRRQY-LLDLAASVP-------QAIVTGTELAP--- 332 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEE-CCGGGCCCHHHHHH-HHHHHHHSS-------EEEEEESSCCT---
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEE-eCccccCCHHHHHH-HHHHHHhcC-------cEEEEEEeccc---
Confidence 579999999999999994 222 268888888 99999999988743 334444331 46677776321
Q ss_pred chhHHHHhHHHhCCcEEEEecCCCC
Q 007024 580 KVGAALSMVYVSGAPVMFVGCGQSY 604 (621)
Q Consensus 580 ~vG~~ls~~~~~g~PI~fvg~Gq~v 604 (621)
..-.+.++..|+-+
T Consensus 333 -----------~~~~i~~l~~G~i~ 346 (359)
T 2o5v_A 333 -----------GAALTLRAQAGRFT 346 (359)
T ss_dssp -----------TCSEEEEEETTEEE
T ss_pred -----------cCCEEEEEECCEEE
Confidence 33467777777654
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.47 E-value=7.1e-07 Score=83.06 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=27.0
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcC
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~ 443 (621)
+|+ .++|+||||+|||||++.|++.+.+.+
T Consensus 35 ~g~--~~~l~G~~G~GKTtL~~~i~~~~~~~g 64 (149)
T 2kjq_A 35 HGQ--FIYVWGEEGAGKSHLLQAWVAQALEAG 64 (149)
T ss_dssp CCS--EEEEESSSTTTTCHHHHHHHHHHHTTT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 567 999999999999999999999988753
No 136
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.46 E-value=4.5e-08 Score=107.98 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=47.5
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
..+|++++|.+.+ + +++|+||||||||||+++|+|++.|+.|+|.+.+.++
T Consensus 17 ~~~l~~vsl~i~~-e--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-L--VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-S--EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-c--eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4578999999999 8 9999999999999999999999999999999998765
No 137
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.44 E-value=9.4e-09 Score=98.37 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=58.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcccccceeee--eehhhh-hhh----hc--ccceeecCCCCCHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGA--VEQLRT-HAR----RL--QVPIFEKGYEKDPAI 484 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt~Riga--veQl~~-~~~----~L--~v~l~~~~~~~d~~~ 484 (621)
+++|+|++||||||+++.|++++.++ .|.|.+.+.+++.+.. ...++. ... .. +..++... .+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~--~~~~~ 81 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR--VSEEE 81 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE--CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec--CChhh
Confidence 89999999999999999999999998 6889988776432210 111110 000 00 00011111 11221
Q ss_pred --HHHHHHHHHhhcCCCccccc-cchhHHhHHHHHHHHHh
Q 007024 485 --VAKEAIQEATRNGSDVVLVD-TAGRMQDNEPLMRALSK 521 (621)
Q Consensus 485 --ia~~al~~~~~~~~d~vliD-tSGg~qqr~~LaraL~~ 521 (621)
-+.+.+... +.++|.++++ +|||++|++.|+|++..
T Consensus 82 ~a~l~~~i~~~-l~g~dt~i~EglSgGq~qri~lARall~ 120 (171)
T 2f1r_A 82 GNDLDWIYERY-LSDYDLVITEGFSKAGKDRIVVVKKPEE 120 (171)
T ss_dssp HTCHHHHHHHH-TTTCSEEEEESCGGGCCCEEEECSSGGG
T ss_pred hhCHHHHHHhh-CCCCCEEEECCcCCCCCcEEEEEecccC
Confidence 223333320 2278877765 69999999999999984
No 138
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.36 E-value=1.2e-06 Score=87.44 Aligned_cols=155 Identities=21% Similarity=0.139 Sum_probs=84.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeee-----e-----ehhhhhhh-hcccc--eee-cCCCC
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA-----V-----EQLRTHAR-RLQVP--IFE-KGYEK 480 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Riga-----v-----eQl~~~~~-~L~v~--l~~-~~~~~ 480 (621)
+.+++++|..||||||++..|+..+. .+.+|+++..|...... . ...+.... .++.. +.. .....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 56999999999999999999999988 88899999988742110 0 00000000 00000 000 00000
Q ss_pred CHHHHHHHHHHHHhhcCCCccccccchhHHhHH--HHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhh
Q 007024 481 DPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNE--PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLS 558 (621)
Q Consensus 481 d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~--~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~ 558 (621)
.......+.++.+. .+++++++||+|...... .+...+...+ .+ +++++|.++....++.+....+...+....
T Consensus 93 ~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~--~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 93 EKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENL--PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp TTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTS--SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHH--hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 00111223333322 358999999999865321 1122233222 45 788888888888777654322211111111
Q ss_pred cCCCCCCceEEEecccccc
Q 007024 559 SSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 559 ~~~~~~~it~IIlTK~De~ 577 (621)
.. .....+++||+|..
T Consensus 169 ~~---~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 169 RL---GATTIPALNKVDLL 184 (262)
T ss_dssp HH---TSCEEEEECCGGGC
T ss_pred cc---CCCeEEEEeccccc
Confidence 11 12357999999986
No 139
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.35 E-value=1e-07 Score=101.39 Aligned_cols=105 Identities=15% Similarity=0.032 Sum_probs=61.8
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh-hcCcEEEEc-cccc-----ceeeeeehhhhhhhhcccceeecCCCCCHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL-QHKVSVMMA-ACDT-----FRSGAVEQLRTHARRLQVPIFEKGYEKDPAI 484 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~-~~~GkV~I~-~~Dt-----~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ 484 (621)
.|+ +++|+||||||||||++.|+|.+. +..|.|.+. +.+. .+++++.|...+...+++.-+. ........
T Consensus 214 ~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~-l~~l~~~e 290 (358)
T 2rcn_A 214 TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG-LWHLEPEQ 290 (358)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC-CCCCCHHH
T ss_pred CCC--EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh-hcCCCHHH
Confidence 577 999999999999999999999999 999999886 4221 2467777754333333321110 11222322
Q ss_pred H---HHHHHHHHhhcCC-CccccccchhHHhHHHHHHHHH
Q 007024 485 V---AKEAIQEATRNGS-DVVLVDTAGRMQDNEPLMRALS 520 (621)
Q Consensus 485 i---a~~al~~~~~~~~-d~vliDtSGg~qqr~~LaraL~ 520 (621)
. +.++++.+....+ +.....+| |+++++++++++.
T Consensus 291 ~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 291 ITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 2 2233333343333 56667789 8999998887654
No 140
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.32 E-value=5.3e-06 Score=79.39 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=93.8
Q ss_pred EEEEEe-cCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhh--hhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 417 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHA--RRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 417 iiaLVG-pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~--~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
+|+|++ ..|+||||+...||..+...+.+|+++.+|.... +..+. ...++++..... ....+.+..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~l~~l 72 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMS-----LTNWSKAGKAAFDVFTAAS-----EKDVYGIRKD 72 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCH-----HHHHHTTSCCSSEEEECCS-----HHHHHTHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCC-----HHHHHhcCCCCCcEEecCc-----HHHHHHHHHh
Confidence 777874 5679999999999999988888999999996321 11111 111233332211 2233444443
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
. ..||++++|++++... ....+. ...|.++++.+|...- . ....+.+.+..+........+ ++|+|+
T Consensus 73 ~-~~yD~viiD~~~~~~~---~~~~~l-----~~ad~viiv~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~-~vv~N~ 139 (206)
T 4dzz_A 73 L-ADYDFAIVDGAGSLSV---ITSAAV-----MVSDLVIIPVTPSPLD--F-SAAGSVVTVLEAQAYSRKVEA-RFLITR 139 (206)
T ss_dssp T-TTSSEEEEECCSSSSH---HHHHHH-----HHCSEEEEEECSCTTT--H-HHHHHHHHHHTTSCGGGCCEE-EEEECS
T ss_pred c-CCCCEEEEECCCCCCH---HHHHHH-----HHCCEEEEEecCCHHH--H-HHHHHHHHHHHHHHhCCCCcE-EEEEec
Confidence 3 4689999999988732 222222 2357788877775432 2 233333444443321122344 899999
Q ss_pred ccccccchhHHHHhHHHhCCcEE
Q 007024 574 FDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 574 ~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
++.-......+...+...+.|+.
T Consensus 140 ~~~~~~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 140 KIEMATMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp BCTTEEEEHHHHHHHHHHTCCBC
T ss_pred cCCCchHHHHHHHHHHHcCCcee
Confidence 99653334556677777888865
No 141
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.32 E-value=8.8e-07 Score=100.59 Aligned_cols=106 Identities=23% Similarity=0.230 Sum_probs=51.0
Q ss_pred HHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHc--
Q 007024 317 FSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRIL-- 394 (621)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il-- 394 (621)
+..-|+.+.+ +++.++..++..++ +.. +.+++.++..+.++++..+.+....+...+.+.+.++-
T Consensus 41 ~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (611)
T 3izq_1 41 LKAQLQDYQG---WDNLSLKLALFDNN-------FDL---ESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISIS 107 (611)
T ss_dssp HHHHHHHHHC---CCSSHHHHHHHHTT-------TCS---SHHHHHHHHTTCSSSCC-----------------------
T ss_pred HHHHHHHhcC---cchhHHHHHHHHhh-------ccH---HHHHHHHHHHhccccccCCCChHHHHHHHHHHHHHhhccc
Confidence 5556666665 67777766654443 222 66777788888888777776766666666666665551
Q ss_pred ------------------------------------------CCCCccccccccccccccCCceEEEEEecCCCCHHHHH
Q 007024 395 ------------------------------------------TPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNL 432 (621)
Q Consensus 395 ------------------------------------------~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlL 432 (621)
.|....++...+. .......|+|||..|||||||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~k~~lkV~ivG~~n~GKSTLi 184 (611)
T 3izq_1 108 QQRPNDRLPDWLDEEESEGERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVK---SALPHLSFVVLGHVDAGKSTLM 184 (611)
T ss_dssp -----------------------------------------------------CC---CCCCCCEEEEECCSSSCHHHHH
T ss_pred ccccchhcccccccccccccccccchhhhhhhhhhhhccccCCCCcchhHHHHHh---ccCCceEEEEEECCCCCHHHHH
Confidence 1111111111111 1223458999999999999999
Q ss_pred HHHHHh
Q 007024 433 AKVAYW 438 (621)
Q Consensus 433 akLAg~ 438 (621)
+.|.+.
T Consensus 185 n~Ll~~ 190 (611)
T 3izq_1 185 GRLLYD 190 (611)
T ss_dssp HHHHSC
T ss_pred HHHHHh
Confidence 998753
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.31 E-value=8.9e-08 Score=99.03 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHHhHhhcC--c-EEEEcccccceeeeeehhhhhhhhccc-----ceee-c--CCCCC
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK--V-SVMMAACDTFRSGAVEQLRTHARRLQV-----PIFE-K--GYEKD 481 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~--G-kV~I~~~Dt~RigaveQl~~~~~~L~v-----~l~~-~--~~~~d 481 (621)
++|.+|+|+|++||||||+++.|++++.+.+ . .+.++..|.|-... ...+++.. +++. . ....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~-----~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTH-----EDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCH-----HHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCCh-----HHHHHHhccccccchhhhccCcchhH
Confidence 3456999999999999999999999998753 1 34444666542110 11111110 1111 0 11122
Q ss_pred HHHHHHHHHHHHhhcCC----------CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 482 PAIVAKEAIQEATRNGS----------DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 482 ~~~ia~~al~~~~~~~~----------d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
. ....+.+..+.. ++ ...-..+|||++++++++++.. .+|+++|+ +++++++|+.
T Consensus 104 ~-~~l~~~l~~l~~-g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~-----~~~~IlIl-EG~~~~ld~~ 168 (290)
T 1odf_A 104 M-KLLQEVLNTIFN-NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIK-----LPVDIFIL-EGWFLGFNPI 168 (290)
T ss_dssp H-HHHHHHHHHHTC-------CCEEEECCEETTHHHHTCEECSSCEEEE-----SSCSEEEE-EESSTTCCCC
T ss_pred H-HHHHHHHHHhhc-cCccccCcceeeccCccccCCccccccccccceE-----cCCCEEEE-eCccccCCcc
Confidence 2 223334443322 21 1112356999998876654333 37888888 9999999974
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.30 E-value=2.2e-07 Score=96.48 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=36.5
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHh--hcCcEEEEcccccc
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTF 454 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~~~GkV~I~~~Dt~ 454 (621)
..|+ +++|+|||||||||++++|++++. |.+|+|.+...|-+
T Consensus 78 ~~g~--iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPY--IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCE--EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCE--EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3455 999999999999999999999998 89999999666543
No 144
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.30 E-value=1.2e-06 Score=85.01 Aligned_cols=164 Identities=13% Similarity=0.183 Sum_probs=88.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeec---C-CCCCHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK---G-YEKDPAIVAKEAI 490 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~---~-~~~d~~~ia~~al 490 (621)
.++++|+|+.||||||+++.|++.+... .++.+...|+.. + +.. ...+..++.+... + ..... ....+++
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~-~-~d~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 103 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS-K-ADY--ERVRRFGIKAEAISTGKECHLDA-HMIYHRL 103 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC-H-HHH--HHHHTTTCEEEECCCTTCSSCCH-HHHHTTG
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC-c-hhH--HHHHhCCCcEEEecCCceeeccc-HHHHHHH
Confidence 3489999999999999999999877544 677777777642 1 110 0011112211111 0 11111 1222222
Q ss_pred HHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
. ...++|++++||+|...... ... ..++.+++|.+++.+.+.... +... +. ....++
T Consensus 104 ~--~~~~~d~iiidt~G~~~~~~--------~~~-~~~~~~i~vvd~~~~~~~~~~---~~~~---~~------~~~iiv 160 (221)
T 2wsm_A 104 K--KFSDCDLLLIENVGNLICPV--------DFD-LGENYRVVMVSVTEGDDVVEK---HPEI---FR------VADLIV 160 (221)
T ss_dssp G--GGTTCSEEEEEEEEBSSGGG--------GCC-CSCSEEEEEEEGGGCTTHHHH---CHHH---HH------TCSEEE
T ss_pred H--hcCCCCEEEEeCCCCCCCCc--------hhc-cccCcEEEEEeCCCcchhhhh---hhhh---hh------cCCEEE
Confidence 2 33568999999999411100 001 234566666777777543211 1111 11 345899
Q ss_pred ecccccccc---chhHHHHhHHHh--CCcEEEEe--cCCCCCcc
Q 007024 571 LTKFDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 571 lTK~De~~~---~vG~~ls~~~~~--g~PI~fvg--~Gq~v~DL 607 (621)
+||+|.... ....+...+... +.|+++++ +|+++.+|
T Consensus 161 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l 204 (221)
T 2wsm_A 161 INKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEW 204 (221)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHH
T ss_pred EecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHH
Confidence 999998632 234444444444 35777766 56665543
No 145
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.30 E-value=2.6e-06 Score=91.90 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=110.4
Q ss_pred cchHHHHHHHhccCcccCccchHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHH
Q 007024 314 TGWFSSMFQSIAGKANLDKADLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRI 393 (621)
Q Consensus 314 ~~~~~~~~~~~~~~~~l~~~~l~~~l~~l~~~L~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~i 393 (621)
.|+-....+.|......|-+++.-. .-.+....+|++..-+.++++.+.+... ..|.+....... +..+.++
T Consensus 89 ~gi~~~~~~~L~~ag~~tv~~~~~~--~~~~L~~~~gis~~~~~~i~~~a~~~~~----~~~~ta~~l~~~--~~~~~~i 160 (400)
T 3lda_A 89 NGITMADVKKLRESGLHTAEAVAYA--PRKDLLEIKGISEAKADKLLNEAARLVP----MGFVTAADFHMR--RSELICL 160 (400)
T ss_dssp TTCCHHHHHHHHHTTCCBHHHHHHS--CHHHHHTSTTCCHHHHHHHHHHHHHHSC----CSCCCHHHHHHH--HHTSCEE
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhC--CHHHHHHHhCCCHHHHHHHHHHHHHhcc----ccCCCHHHHHhh--hccCCcc
Confidence 3444456667765555454443211 1223333569999999999998876542 123333322111 1111111
Q ss_pred cCCCCccccccccc-cccccCCceEEEEEecCCCCHHHHHHHHH--HhHhhc-----CcEEEEcccccceeeeeehhhhh
Q 007024 394 LTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGVGKSTNLAKVA--YWLLQH-----KVSVMMAACDTFRSGAVEQLRTH 465 (621)
Q Consensus 394 l~p~~~~~iL~dIs-~~i~~Gep~iiaLVGpNGvGKTTlLakLA--g~L~~~-----~GkV~I~~~Dt~RigaveQl~~~ 465 (621)
.+ ...-|+.+- =-+.+|+ +++|+||||+|||||+..|+ +.+.+. ++.|+|.+.+.++. ..++.+
T Consensus 161 ~T---G~~~LD~lLgGGI~~Ge--i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~---~rl~~~ 232 (400)
T 3lda_A 161 TT---GSKNLDTLLGGGVETGS--ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRP---VRLVSI 232 (400)
T ss_dssp CC---SCHHHHHHTTTSEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCH---HHHHHH
T ss_pred cc---CChhHHHHhcCCcCCCc--EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCH---HHHHHH
Confidence 11 122232221 2356888 99999999999999999776 334332 33566666655431 122233
Q ss_pred hhhcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 466 ARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 466 ~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
++.+++. +.. +++ .+.+........+...+.++ ..++...+|+++++ |+++..++...
T Consensus 233 a~~~gl~---------~~~----vle-------ni~~~~~~~~~~~~~~l~~~-~~~l~~~~~~llVI-Ds~t~~~~~~~ 290 (400)
T 3lda_A 233 AQRFGLD---------PDD----ALN-------NVAYARAYNADHQLRLLDAA-AQMMSESRFSLIVV-DSVMALYRTDF 290 (400)
T ss_dssp HHHTTCC---------HHH----HHH-------TEEEEECCSHHHHHHHHHHH-HHHHHHSCEEEEEE-ETGGGGCC---
T ss_pred HHHcCCC---------hHh----Hhh-------cEEEeccCChHHHHHHHHHH-HHHHHhcCCceEEe-cchhhhCchhh
Confidence 4444331 111 111 11222222233322222222 22334467888888 99999887532
Q ss_pred H--------H---HHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 546 Q--------L---SKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 546 q--------~---~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
. . ..+...|..+++ ..++++|++|.+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lak---e~gitVIlv~Hv 327 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLAD---QFGVAVVVTNQV 327 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH---HHCCEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHH---HcCCEEEEEEee
Confidence 1 1 223344444443 347888888876
No 146
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.26 E-value=1.8e-06 Score=91.34 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=28.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHH--hHhhcCcEE
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY--WLLQHKVSV 446 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg--~L~~~~GkV 446 (621)
.+|+++++.++ .|+|||++||||||+++.|+| +++...|.|
T Consensus 25 ~~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 25 SALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp CCC----CCCC-----EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred cccccccccCC-----EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 46777777653 799999999999999999999 555554543
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.25 E-value=4.5e-07 Score=87.04 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=37.6
Q ss_pred cccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc---------eeeeeehhhhhh
Q 007024 408 AAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF---------RSGAVEQLRTHA 466 (621)
Q Consensus 408 ~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~---------RigaveQl~~~~ 466 (621)
++..+|+ +++|+|||||||||++++|++++. .+.+.+.++. .+++++|.....
T Consensus 2 ~~m~~g~--ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (205)
T 3tr0_A 2 NAMNKAN--LFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRF 63 (205)
T ss_dssp ---CCCC--EEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHH
T ss_pred CcCCCCc--EEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHH
Confidence 4455788 999999999999999999999863 4555554432 256777765433
No 148
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.23 E-value=2e-07 Score=93.04 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=30.7
Q ss_pred eEEEEEecCCCCHHHHHHHHH---HhHhhcCcEEEEccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVMMAAC 451 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLA---g~L~~~~GkV~I~~~ 451 (621)
.+++|+|||||||||+++.|+ |+..++.|.|.+.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~ 66 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI 66 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence 399999999999999999999 877777777766543
No 149
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.21 E-value=1.2e-06 Score=81.23 Aligned_cols=143 Identities=19% Similarity=0.157 Sum_probs=76.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|++|||||||++.|++.....+ ...-.+.+. ..+. +. .
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~-~~~~~t~~~-~~~~------------~~----------------------~ 47 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIG-NWPGVTVEK-KEGE------------FE----------------------Y 47 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC------CCCC-CEEE------------EE----------------------E
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeecc-CCCCcceee-eEEE------------EE----------------------E
Confidence 4799999999999999999987432111 000000000 0000 00 0
Q ss_pred cCCCccccccchhHHh-----HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 496 NGSDVVLVDTAGRMQD-----NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 496 ~~~d~vliDtSGg~qq-----r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
.+....++||+|.... ...+.+... ...+++++++|-+++. .... ...+..+.... ..-.++
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~D~~~---~~~~----~~~~~~~~~~~---~p~ilv 114 (165)
T 2wji_A 48 NGEKFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATA---LERN----LYLTLQLMEMG---ANLLLA 114 (165)
T ss_dssp TTEEEEEEECCCCSCSSSSSHHHHHHHHHH---HHHCCSEEEEEEETTC---HHHH----HHHHHHHHHTT---CCEEEE
T ss_pred CCcEEEEEECCCcccCCCcchhHHHHHHHH---hcCCCCEEEEEecCCc---hhHh----HHHHHHHHhcC---CCEEEE
Confidence 1224567788885432 112222222 1136899988877754 2111 12333333322 345789
Q ss_pred eccccccccc-h-hHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 571 LTKFDTIDDK-V-GAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 571 lTK~De~~~~-v-G~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
.+|+|..... + -.+-.++...+.|+..++ +|+++.++
T Consensus 115 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 115 LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred EEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence 9999975211 1 024456677788987776 67766553
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.20 E-value=4.6e-06 Score=81.88 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=34.8
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
-+.+|+ +++|+||||+||||++..++....+.++.|.+.+.+.
T Consensus 19 Gl~~G~--~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERN--VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTC--EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 456888 9999999999999998888876666677777766554
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=3.1e-06 Score=88.23 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=26.6
Q ss_pred EEEEEecCCCCHHHHHHHHHH-hHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAY-WLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg-~L~~~~GkV~I~~~Dt 453 (621)
.+.|+||||+||||+++.|++ ++.+..|.|.+.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 399999999999999999999 6778888888876543
No 152
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.18 E-value=5e-07 Score=89.58 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=41.3
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEcccccc-----eeeeeehhhhh
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTF-----RSGAVEQLRTH 465 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~Dt~-----RigaveQl~~~ 465 (621)
..++|+ +++|+||||||||||++.|+|++.| ..|.|.+.+.+.. .+++++|....
T Consensus 12 ~~~~G~--ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~ 73 (219)
T 1s96_A 12 HMAQGT--LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE 73 (219)
T ss_dssp ---CCC--EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred cCCCCc--EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH
Confidence 345888 9999999999999999999999885 5777877765441 26677775543
No 153
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=2.3e-05 Score=74.13 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=82.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.+++-.......-. .+.+.+. .. +.+ .
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~~~~-~~------------~~~--------------------~ 68 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVST-VGIDFKV-KT------------VYR--------------------H 68 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEE-ETTTEEE-EE------------EEE--------------------T
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCC-eeeEEEE-EE------------EEE--------------------C
Confidence 357999999999999999999864322111111 1211110 00 000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+ .+..... .+.+.+++|-+.+.. +. ...+...+..+.........-.++.||+
T Consensus 69 ~~~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~-~s---~~~~~~~~~~i~~~~~~~~piilv~nK~ 138 (191)
T 3dz8_A 69 EKRVKLQIWDTAGQERYR-TITTAYY-----RGAMGFILMYDITNE-ES---FNAVQDWATQIKTYSWDNAQVILVGNKC 138 (191)
T ss_dssp TTTEEEEEECHHHHHHCH-HHHHHHH-----TTCCEEEEEEETTCH-HH---HHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEeCCChHHHH-HHHHHHH-----ccCCEEEEEEECcCH-HH---HHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 123456789999976543 3334444 677888887766532 11 1222233333322211224457889999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 139 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (191)
T 3dz8_A 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 975322 2345566778899877776 56655543
No 154
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.15 E-value=5.1e-07 Score=89.15 Aligned_cols=37 Identities=19% Similarity=0.086 Sum_probs=22.6
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHH-HhHh
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVA-YWLL 440 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLA-g~L~ 440 (621)
...++||.+.+|+ +++|+|||||||||++++|+ +++.
T Consensus 16 ~~~~~sl~v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGV--ILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCC--EEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCC--EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567899999999 99999999999999999999 9884
No 155
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.13 E-value=2.2e-06 Score=81.80 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhh-----------cCcEEEEcccc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQ-----------HKVSVMMAACD 452 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~-----------~~GkV~I~~~D 452 (621)
...++|+|+||||||||++.|++...+ ..|.|.+.+.+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 358999999999999999999987654 35677776644
No 156
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.12 E-value=1.1e-05 Score=79.71 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=74.8
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE-cccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I-~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~ 492 (621)
.+..|+|+|++|||||||++.|++......+.... .+.++.. +. +
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~-~~--------------~------------------- 73 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEK-RS--------------S------------------- 73 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEE-EE--------------E-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEE-EE--------------E-------------------
Confidence 34589999999999999999998754433332210 1111100 00 0
Q ss_pred HhhcCCCccccccchhHH-------hHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 493 ATRNGSDVVLVDTAGRMQ-------DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 493 ~~~~~~d~vliDtSGg~q-------qr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
...+..+.++||+|-.. ....+.+.+.. ....++.+|+|.+.+ ..+..+ ...+...+..+... ...
T Consensus 74 -~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~d~~-~~~~~~-~~~l~~~~~~~~~~--~~~ 146 (239)
T 3lxx_A 74 -SWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL--TSPGPHALLLVVPLG-RYTEEE-HKATEKILKMFGER--ARS 146 (239)
T ss_dssp -EETTEEEEEEECCSCC-----CHHHHHHHHHHHHH--TTTCCSEEEEEEETT-CCSSHH-HHHHHHHHHHHHHH--HGG
T ss_pred -EeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh--cCCCCcEEEEEeeCC-CCCHHH-HHHHHHHHHHhhhh--ccc
Confidence 00123457889998321 11123333321 125789999876654 444433 23333333222211 113
Q ss_pred ceEEEeccccccccc-h--------hHHHHhHHHhCCcEEEEe
Q 007024 566 IDGILLTKFDTIDDK-V--------GAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 566 it~IIlTK~De~~~~-v--------G~~ls~~~~~g~PI~fvg 599 (621)
...+++||+|..... + ..+-.++...+.+..++.
T Consensus 147 ~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~ 189 (239)
T 3lxx_A 147 FMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALN 189 (239)
T ss_dssp GEEEEEECGGGC------------CHHHHHHHHHHSSSEEECC
T ss_pred eEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEE
Confidence 568999999986322 1 135566777787766543
No 157
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.12 E-value=3.4e-07 Score=95.03 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=36.5
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE---cccccc---------eeeeeehhh
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDTF---------RSGAVEQLR 463 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I---~~~Dt~---------RigaveQl~ 463 (621)
.|+ +++|+||||||||||++.|+ .+.+..|+|.+ .|.++. ++|++.|.+
T Consensus 164 ~G~--i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~p 224 (302)
T 2yv5_A 164 EGF--ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTP 224 (302)
T ss_dssp TTC--EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSC
T ss_pred cCc--EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECc
Confidence 467 99999999999999999999 99999999999 676652 267776643
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.11 E-value=7.2e-06 Score=78.38 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+.++|+|+||||||||++.|++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999999864
No 159
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.10 E-value=7e-06 Score=74.60 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=53.1
Q ss_pred CccccccchhHHh------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 499 DVVLVDTAGRMQD------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 499 d~vliDtSGg~qq------r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
...++||+|.... ......... ...+.+++|-+++.+...... .+.+.+... ...-.++.|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~------~~p~ilv~n 116 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRAL-----EDAEVVLFAVDGRAELTQADY--EVAEYLRRK------GKPVILVAT 116 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHT-----TTCSEEEEEEESSSCCCHHHH--HHHHHHHHH------TCCEEEEEE
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHH-----HhCCEEEEEEECCCcccHhHH--HHHHHHHhc------CCCEEEEEE
Confidence 4678899987642 111222222 577888888888877665432 233333321 134589999
Q ss_pred cccccccchhHHHHhHHHhCC-cEEEEe--cCCCCCc
Q 007024 573 KFDTIDDKVGAALSMVYVSGA-PVMFVG--CGQSYTD 606 (621)
Q Consensus 573 K~De~~~~vG~~ls~~~~~g~-PI~fvg--~Gq~v~D 606 (621)
|+|... .--.+..++ ..+. |+..++ +|+++.+
T Consensus 117 K~Dl~~-~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~ 151 (161)
T 2dyk_A 117 KVDDPK-HELYLGPLY-GLGFGDPIPTSSEHARGLEE 151 (161)
T ss_dssp CCCSGG-GGGGCGGGG-GGSSCSCEECBTTTTBSHHH
T ss_pred Cccccc-chHhHHHHH-hCCCCCeEEEecccCCChHH
Confidence 999873 322233333 5666 666555 5555544
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.10 E-value=2.7e-05 Score=85.06 Aligned_cols=184 Identities=12% Similarity=0.139 Sum_probs=97.7
Q ss_pred CCccchHHHHHHHHHHHHHHHcCCC-------CccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-Cc
Q 007024 373 ASFTRISSIVQAAMEEALVRILTPR-------RSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KV 444 (621)
Q Consensus 373 ~~~~~~~~~v~~al~~~L~~il~p~-------~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~G 444 (621)
..+.++...+...+ +.+.+..... .....|+++..-+.+|+ +++|.|++|+||||++..|++.+.+. +.
T Consensus 157 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~tG~~~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g~ 233 (454)
T 2r6a_A 157 GAFKNIKDILVQTY-DNIEMLHNRDGEITGIPTGFTELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTNE 233 (454)
T ss_dssp CCCCCHHHHHHHHH-HHHHHHHSCCCCCCSBCCSCHHHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSSC
T ss_pred ccCccHHHHHHHHH-HHHHHHHhCCCCCCCCCCCcHHHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34555555554443 3344432211 23456777777788999 99999999999999999999988764 55
Q ss_pred EEEEcccccceeeeeehhhhh--hhhcccceee--cC-CCCCHHHHHHHHHHHHhhcCCCcccccc---chhHHhHHHHH
Q 007024 445 SVMMAACDTFRSGAVEQLRTH--ARRLQVPIFE--KG-YEKDPAIVAKEAIQEATRNGSDVVLVDT---AGRMQDNEPLM 516 (621)
Q Consensus 445 kV~I~~~Dt~RigaveQl~~~--~~~L~v~l~~--~~-~~~d~~~ia~~al~~~~~~~~d~vliDt---SGg~qqr~~La 516 (621)
.|++.+..... +|+... +...++++.. .+ ...+....+.+++..+. .....+.|+ +.++. ...+
T Consensus 234 ~Vl~~s~E~s~----~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~--~~~l~i~d~~~~s~~~i--~~~~ 305 (454)
T 2r6a_A 234 NVAIFSLEMSA----QQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS--NAGIYIDDTPSIRVSDI--RAKC 305 (454)
T ss_dssp CEEEEESSSCH----HHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHH--SSCEEEECCTTCCHHHH--HHHH
T ss_pred cEEEEECCCCH----HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHh--cCCEEEECCCCCCHHHH--HHHH
Confidence 88888766421 232211 2222332211 01 11111122233333332 223344444 23222 2334
Q ss_pred HHHHhhhhcCCCcEEEEEeCCcCCCCH-------HHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 517 RALSKLIYLNNPDLVLFVGEALVGNDA-------VDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 517 raL~~l~~~~~PdlILLVDEpt~GlD~-------~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
+.+. ...+|++|++ |+++..... ......+.+.|+.++.. .++.+++++.+
T Consensus 306 ~~l~---~~~~~~livI-D~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke---~~i~vi~~sql 363 (454)
T 2r6a_A 306 RRLK---QESGLGMIVI-DYLQLIQGSGRSKENRQQEVSEISRSLKALARE---LEVPVIALSQL 363 (454)
T ss_dssp HHHH---TTTCCCEEEE-ECGGGSCCSCC----CHHHHHHHHHHHHHHHHH---HTCCEEEEECC
T ss_pred HHHH---HHcCCCEEEE-ccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH---hCCeEEEEecC
Confidence 4443 3457888887 998765532 11223333445555432 36677777664
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.10 E-value=9.5e-06 Score=83.93 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=76.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
.+++|+|++|||||||++.|+|.- +.+.+... |. +.....++ + ..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-------~t-Tr~~~~gi-~--------------------~~ 53 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-------QT-TRHRIVGI-H--------------------TE 53 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-------SC-CSSCEEEE-E--------------------EE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-------Cc-ceeeEEEE-E--------------------EE
Confidence 389999999999999999998742 22221110 00 00001111 0 01
Q ss_pred cCCCccccccchhH-HhHHHHHHHHHhh--hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 496 NGSDVVLVDTAGRM-QDNEPLMRALSKL--IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 496 ~~~d~vliDtSGg~-qqr~~LaraL~~l--~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
.+....++||+|-. .....+.+.+... ......|++++|.+++. +...+. . ++..+... .....++++
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~--~---i~~~l~~~---~~P~ilvlN 124 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDE--M---VLNKLREG---KAPVILAVN 124 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHH--H---HHHHHHSS---SSCEEEEEE
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH--H---HHHHHHhc---CCCEEEEEE
Confidence 12356788999875 3333333333322 12356788888777766 665543 2 22333322 245688999
Q ss_pred cccccc--cchhHHHH-hHHHhCC-cEEEEec--CCCCC
Q 007024 573 KFDTID--DKVGAALS-MVYVSGA-PVMFVGC--GQSYT 605 (621)
Q Consensus 573 K~De~~--~~vG~~ls-~~~~~g~-PI~fvg~--Gq~v~ 605 (621)
|+|... ...-..+. +....+. +++.++. |+.+.
T Consensus 125 K~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 125 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp STTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred CcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 999873 11112222 2223454 4555553 66553
No 162
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=2.3e-06 Score=82.57 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=24.8
Q ss_pred CCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 396 PRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 396 p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
|.....++++|+|.+.+++ +|+|+||+||||||+.+.|+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~--~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMV--RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------------CCC--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCceeEecCCCC--EEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444567899999999988 99999999999999999999877
No 163
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.09 E-value=4e-07 Score=98.75 Aligned_cols=33 Identities=27% Similarity=0.185 Sum_probs=30.8
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHh
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
+++++++..+. .++|||+|||||||||+.|++.
T Consensus 148 ~~i~lelk~g~--~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIA--DVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSC--SEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCC--EEEEECCCCCcHHHHHHHHHcC
Confidence 57899999998 9999999999999999999986
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.08 E-value=7.1e-06 Score=89.19 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
++..++|+|+||||||||++.|+|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 35689999999999999999999864
No 165
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.08 E-value=6.5e-06 Score=85.40 Aligned_cols=148 Identities=22% Similarity=0.201 Sum_probs=80.0
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc--cceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD--TFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEA 489 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D--t~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~a 489 (621)
++.+++++|+|.+|||||||++.|.|. ++.+.... +.| ....++ +.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~------~~~i~s~~~~tT~----------~~~~~~--~~-------------- 54 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT------KVSIISPKAGTTR----------MRVLGV--KN-------------- 54 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS------CCSCCCSSSCCCC----------SCEEEE--EE--------------
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC------CccccCCCCCcee----------eEEEEE--Ee--------------
Confidence 344669999999999999999998752 11111111 100 000011 00
Q ss_pred HHHHhhc-CCCccccccchhHHhH------HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC
Q 007024 490 IQEATRN-GSDVVLVDTAGRMQDN------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN 562 (621)
Q Consensus 490 l~~~~~~-~~d~vliDtSGg~qqr------~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~ 562 (621)
.. ++.++++||+|-.... ..+....... ..++|.+++|-+++.+....+.. . .+..+...
T Consensus 55 -----~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~--l~~aD~il~VvD~~~~~~~~~~~-~---~~~~l~~~-- 121 (308)
T 3iev_A 55 -----IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS--LEEADVILFMIDATEGWRPRDEE-I---YQNFIKPL-- 121 (308)
T ss_dssp -----ETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH--HHHCSEEEEEEETTTBSCHHHHH-H---HHHHTGGG--
T ss_pred -----cCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCchhHH-H---HHHHHHhc--
Confidence 11 4567899999964321 1111111111 14689999988888877665531 1 13333332
Q ss_pred CCCceEEEecccccc-ccc-hh-HHHHhHHHhC--CcEEEEe--cCCCCC
Q 007024 563 PQLIDGILLTKFDTI-DDK-VG-AALSMVYVSG--APVMFVG--CGQSYT 605 (621)
Q Consensus 563 ~~~it~IIlTK~De~-~~~-vG-~~ls~~~~~g--~PI~fvg--~Gq~v~ 605 (621)
.....+++||+|.. ... .- .+-.+....+ .|++.++ +|+++.
T Consensus 122 -~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 122 -NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLD 170 (308)
T ss_dssp -CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHH
T ss_pred -CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHH
Confidence 23568999999986 221 12 2223344444 6777766 555443
No 166
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.07 E-value=6.4e-06 Score=76.07 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=81.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.|++-...... ....+..+...... ..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------------~~t~~~~~~~~~~~-------------~~ 60 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC---------------------PHTIGVEFGTRIIE-------------VS 60 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC---------------------TTSCCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC---------------------CCccceEEEEEEEE-------------EC
Confidence 358999999999999999999863211000 00000000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+++... . ...+...+..+.........-.+++||+
T Consensus 61 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s---~~~~~~~~~~~~~~~~~~~piilv~nK~ 130 (179)
T 1z0f_A 61 GQKIKLQIWDTAGQERFRA-VTRSYY-----RGAAGALMVYDITRRS-T---YNHLSSWLTDARNLTNPNTVIILIGNKA 130 (179)
T ss_dssp TEEEEEEEEECTTGGGTCH-HHHHHH-----HTCSEEEEEEETTCHH-H---HHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CeEEEEEEEECCCChHhhh-hHHHHh-----ccCCEEEEEEeCcCHH-H---HHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 1123567889999765433 333333 4668888876665431 1 1122222222222111224567999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 986321 2356677778888887776 66666543
No 167
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.06 E-value=1.4e-05 Score=72.92 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=78.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.|++-...... ..+ ++ ..+...... ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~------~~~--~~-------------~~~~~~~~~-------------~~ 51 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQ------EST--IG-------------AAFLTQTVC-------------LD 51 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC------CCC--SS-------------EEEEEEEEE-------------ET
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC------CCc--cc-------------eEEEEEEEE-------------EC
Confidence 357999999999999999999862111000 000 00 000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|....+ .+..... .+.+.+++|-+++... . ...+...+..+........+-.++.||+
T Consensus 52 ~~~~~~~~~D~~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~---s-~~~~~~~~~~~~~~~~~~~~iilv~nK~ 121 (170)
T 1r2q_A 52 DTTVKFEIWDTAGQERYH-SLAPMYY-----RGAQAAIVVYDITNEE---S-FARAKNWVKELQRQASPNIVIALSGNKA 121 (170)
T ss_dssp TEEEEEEEEEECCSGGGG-GGHHHHH-----TTCSEEEEEEETTCHH---H-HHHHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred CEEEEEEEEeCCCcHHhh-hhhHHhc-----cCCCEEEEEEECCCHH---H-HHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 112356788999965433 2333344 6778888876665321 1 1222233333332222223446677999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|..... .-.+..++...+.|+..++ +|+++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred cCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 986321 2445666777888877766 5665544
No 168
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.06 E-value=2e-06 Score=81.63 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.7
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+.+|+ +++|+|||||||||+++.|++. +..|.|.+.+.+.
T Consensus 6 i~~g~--~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGN--ILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTE--EEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence 34677 9999999999999999999997 6778999987664
No 169
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.06 E-value=9.7e-06 Score=78.41 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=77.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|..|||||||++.|++.-. +.... ++ .|. . ..+..+... .
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~-----~~~~~-~~--~~~-------t--~~~~~~~~~----------------~ 75 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKR-----LAFAS-KT--PGR-------T--QHINYFSVG----------------P 75 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSS-----SSCTT-CC--CCS-------C--CCEEEEEES----------------C
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc-----ceeec-CC--CCc-------c--cceEEEEec----------------C
Confidence 45899999999999999999876320 00000 00 000 0 000010000 0
Q ss_pred hcCCCccccccchh----------HHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 495 RNGSDVVLVDTAGR----------MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 495 ~~~~d~vliDtSGg----------~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
..+..+.++||+|- ..-+ .+..... .....++.+++|.+++.++..... ..+..+....
T Consensus 76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~l~~~~--- 144 (223)
T 4dhe_A 76 AAEPVAHLVDLPGYGYAEVPGAAKAHWE-QLLSSYL--QTRPQLCGMILMMDARRPLTELDR-----RMIEWFAPTG--- 144 (223)
T ss_dssp TTSCSEEEEECCCCCSSCCCSTHHHHHH-HHHHHHH--HHCTTEEEEEEEEETTSCCCHHHH-----HHHHHHGGGC---
T ss_pred CCCCcEEEEcCCCCCcccCChhhHHHHH-HHHHHHH--hcCcCcCEEEEEEeCCCCCCHHHH-----HHHHHHHhcC---
Confidence 12457789999993 2111 1222111 122446778888888777765432 2333333322
Q ss_pred CceEEEeccccccccch-----hHHHHhHHH-------hCCcEEEEe--cCCCCCcc
Q 007024 565 LIDGILLTKFDTIDDKV-----GAALSMVYV-------SGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 565 ~it~IIlTK~De~~~~v-----G~~ls~~~~-------~g~PI~fvg--~Gq~v~DL 607 (621)
....+++||+|...... ..+...+.. .+.|+..++ +|+++.+|
T Consensus 145 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l 201 (223)
T 4dhe_A 145 KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDA 201 (223)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHH
T ss_pred CCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHH
Confidence 34578999999873221 112222222 456777776 67666553
No 170
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.04 E-value=8.5e-06 Score=86.30 Aligned_cols=41 Identities=12% Similarity=0.063 Sum_probs=34.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
+++|+ ++.|.||||+||||++..++......+++|.+.+.+
T Consensus 58 l~~G~--iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 58 LPRGR--VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45788 999999999999999999998777778888776654
No 171
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.04 E-value=6.4e-06 Score=77.26 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=75.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE-ccccc-ceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDT-FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I-~~~Dt-~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~ 492 (621)
+..++|+|++|||||||++.|++... .+.- .+... +..+. +
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~----~~~~~~~~t~~~~~~~------------~--------------------- 49 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENV----YIGNWPGVTVEKKEGE------------F--------------------- 49 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCE----EEEECTTSCCEEEEEE------------E---------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc----cccCCCCeeccceEEE------------E---------------------
Confidence 35899999999999999999986321 1100 00000 00000 0
Q ss_pred HhhcCCCccccccchhHHhH-----HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCce
Q 007024 493 ATRNGSDVVLVDTAGRMQDN-----EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (621)
Q Consensus 493 ~~~~~~d~vliDtSGg~qqr-----~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (621)
...+....++||+|..... ..+.+... ....++.+++|.+++. ... +...+..+.... ..-
T Consensus 50 -~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~d~~~---~~~----~~~~~~~~~~~~---~pi 115 (188)
T 2wjg_A 50 -EYNGEKFKVVDLPGVYSLTANSIDEIIARDYI---INEKPDLVVNIVDATA---LER----NLYLTLQLMEMG---ANL 115 (188)
T ss_dssp -EETTEEEEEEECCCCSCCSSSSHHHHHHHHHH---HHHCCSEEEEEEEGGG---HHH----HHHHHHHHHTTT---CCE
T ss_pred -EeCCcEEEEEECCCcCccccccHHHHHHHHHH---hccCCCEEEEEecchh---HHH----HHHHHHHHHhcC---CCE
Confidence 0012345678888854321 12222222 1135788888777654 111 123333333322 345
Q ss_pred EEEeccccccccch--hHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 568 GILLTKFDTIDDKV--GAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 568 ~IIlTK~De~~~~v--G~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
.++.+|+|...... -.+-.++...+.|+..++ +|+++.+
T Consensus 116 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 116 LLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp EEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred EEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHH
Confidence 78899999752210 134556677788988877 6666544
No 172
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.04 E-value=7.6e-06 Score=75.74 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=72.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+.+........- -.+.+.+. . .+.+ . .
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~-~------------~~~~-----~--------------~ 54 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKA-TIGADFLT-K------------EVTV-----D--------------G 54 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC----CCCSCEE-E------------EECC-----S--------------S
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCC-ccceEEEE-E------------EEEE-----c--------------C
Confidence 45799999999999999999876321111000 00111100 0 0000 0 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcC-CCCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSS-PNPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~-~~~~~it~IIlTK 573 (621)
.......++||+|....+ .+..... .+.+.+++|-+++... .......+...+...... ......-.+++||
T Consensus 55 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 55 DKVATMQVWDTAGQERFQ-SLGVAFY-----RGADCCVLVYDVTNAS-SFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp SCCEEEEEECCC-----------CCS-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred CcEEEEEEEECCCChHhh-hhhHHHh-----hcCCEEEEEEECCChH-HHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 112356789999955422 1222222 5678888876665432 111111222222222211 1122355899999
Q ss_pred ccccccc----hhHHHHhHH-HhCCcEEEEe--cCCCCCcc
Q 007024 574 FDTIDDK----VGAALSMVY-VSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~~----vG~~ls~~~-~~g~PI~fvg--~Gq~v~DL 607 (621)
+|..... .-.+..++. ..+.|+..++ +|+++.++
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTA 168 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHH
Confidence 9984221 223444454 4567877776 66666554
No 173
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.04 E-value=6.2e-05 Score=75.16 Aligned_cols=163 Identities=15% Similarity=0.171 Sum_probs=89.0
Q ss_pred EEEEEe-cCCCCHHHHHHHHHHhHhhcCcEEEEccccccee------eeeeh---hhhhh-------h-----hccccee
Q 007024 417 VVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------GAVEQ---LRTHA-------R-----RLQVPIF 474 (621)
Q Consensus 417 iiaLVG-pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri------gaveQ---l~~~~-------~-----~L~v~l~ 474 (621)
+|+|++ ..|+||||+...||..+...+.+|+++.+|.... |.-.+ +..+. + .-++.+.
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~l~~l 83 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGGVKVV 83 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGGCEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCCeEEE
Confidence 677765 5589999999999999988888999999997421 11000 10000 0 0122222
Q ss_pred ecCCCCCH-----HHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 475 EKGYEKDP-----AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 475 ~~~~~~d~-----~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
......+. .....+.++.+. ..||++++|++++.... ...+. ...|.+|+|.+|.. ........
T Consensus 84 p~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~---~~~~~-----~~ad~vi~v~~~~~--~~~~~~~~ 152 (263)
T 1hyq_A 84 PAGVSLEGLRKANPEKLEDVLTQIM-ESTDILLLDAPAGLERS---AVIAI-----AAAQELLLVVNPEI--SSITDGLK 152 (263)
T ss_dssp ECCSCHHHHHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHH---HHHHH-----HHSSEEEEEECSSH--HHHHHHHH
T ss_pred cCCCCcChhhccChHHHHHHHHHHH-hhCCEEEEeCCCCCChH---HHHHH-----HHCCEEEEEeCCCh--hHHHHHHH
Confidence 21111011 112223344333 57999999999876522 22222 23467777766632 12222222
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 550 FNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 550 f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
+.+.+... ...+.++|+++++.. .....+-.+....+.|+.
T Consensus 153 ~~~~l~~~-----~~~~~~vv~N~~~~~-~~~~~~~~~~~~~~~~~~ 193 (263)
T 1hyq_A 153 TKIVAERL-----GTKVLGVVVNRITTL-GIEMAKNEIEAILEAKVI 193 (263)
T ss_dssp HHHHHHHH-----TCEEEEEEEEEECTT-THHHHHHHHHHHTTSCEE
T ss_pred HHHHHHhc-----CCCeeEEEEccCCcc-cccchHHHHHHHhCCCeE
Confidence 22333322 235678999999975 233344555566788865
No 174
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.04 E-value=1e-05 Score=76.31 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=81.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..|+|+|+.|||||||++.|++-....... .-.+.+ +.... +.+ .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~-~~~~~------------~~~--------------------~ 61 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI-STIGVD-FKIRT------------IEL--------------------D 61 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCC-CCSSEE-EEEEE------------EEE--------------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCC-Ccccce-EEEEE------------EEE--------------------C
Confidence 4579999999999999999987522111000 000000 00000 000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.|.+++|-+++.. .. ...+...+..+.........-.+++||+
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~---~s-~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 131 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRT-ITSSYY-----RGAHGIIVVYDVTDQ---ES-FNNVKQWLQEIDRYASENVNKLLVGNKC 131 (196)
T ss_dssp TEEEEEEEEEECCSGGGCT-THHHHH-----TTCSEEEEEEETTCH---HH-HHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEECCCcHhhhh-hHHHHH-----hhCCEEEEEEECcCH---HH-HHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 0123567889999654332 233333 677888887766542 11 1122223333322212224557899999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|++.++ +|+++.++
T Consensus 132 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 169 (196)
T 3tkl_A 132 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169 (196)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 986332 2456667788899988887 67766554
No 175
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.04 E-value=1.1e-06 Score=97.68 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=44.9
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+++++++.+..|+ +++|+||||||||||++.|++++.++.|.|.+.+.+-
T Consensus 248 ~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E 298 (511)
T 2oap_1 248 GVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTRE 298 (511)
T ss_dssp HHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCC
T ss_pred HHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCccc
Confidence 45567778888888 8999999999999999999999999999999987663
No 176
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.04 E-value=5.6e-06 Score=78.13 Aligned_cols=143 Identities=15% Similarity=0.124 Sum_probs=76.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..|+|+|+.|||||||++.|.+-....... .-.+.+. ... .+.+ .
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~-~~~------------~~~~--------------------~ 65 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE-ATIGVDF-RER------------AVDI--------------------D 65 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCC-CCCSCCE-EEE------------EEEE--------------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CCcceEE-EEE------------EEEE--------------------C
Confidence 4589999999999999999987522111000 0000000 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+..+..... .+.+.+|+|-+++...........+ ..+..... .....-.+++||+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~-----~~~d~iilv~D~~~~~s~~~~~~~~-~~i~~~~~--~~~~piilv~nK~ 137 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYY-----RNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLL--ANDIPRILVGNKC 137 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHH-----TTCCEEEEEEETTCHHHHHTHHHHH-HHHHHHCC--CSCCCEEEEEECT
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHh-----cCCCEEEEEEECcCHHHHHHHHHHH-HHHHHhcC--CCCCCEEEEEECc
Confidence 01235678999997654424444444 6788888887665421111111112 22222211 1123457899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg 599 (621)
|.... ..-.+..++...+.|+..++
T Consensus 138 Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 165 (189)
T 1z06_A 138 DLRSAIQVPTDLAQKFADTHSMPLFETS 165 (189)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred cccccceeCHHHHHHHHHHcCCEEEEEe
Confidence 98632 12345566677888887766
No 177
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.02 E-value=1.1e-05 Score=75.16 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=49.8
Q ss_pred CccccccchhHHhHHHHH------HHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 499 DVVLVDTAGRMQDNEPLM------RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 499 d~vliDtSGg~qqr~~La------raL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
+..+..+|||++|++.|+ ++|. .+|+++|| ||||+|||+..+ ..+.+.+..+... +.+++++|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~-----~~p~lllL-DEPt~~LD~~~~-~~l~~~l~~~~~~----~~tiiivs 120 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLA-----GEISLLIL-DEPTPYLDEERR-RKLITIMERYLKK----IPQVILVS 120 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHH-----SSCSEEEE-ESCSCTTCHHHH-HHHHHHHHHTGGG----SSEEEEEE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHc-----CCCCEEEE-ECCCccCCHHHH-HHHHHHHHHHHcc----CCEEEEEE
Confidence 345678899999999886 6777 88999999 999999999876 4555677666432 45677777
Q ss_pred cc
Q 007024 573 KF 574 (621)
Q Consensus 573 K~ 574 (621)
.-
T Consensus 121 H~ 122 (148)
T 1f2t_B 121 HD 122 (148)
T ss_dssp SC
T ss_pred Ch
Confidence 63
No 178
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.02 E-value=1e-05 Score=81.85 Aligned_cols=138 Identities=13% Similarity=0.061 Sum_probs=79.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE-ccccc-ceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDT-FRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I-~~~Dt-~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
.++|+|.+|||||||++.|+|... .+.- .+... +..+. + .
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~----~v~~~pg~Tv~~~~~~--------------~--------------------~ 44 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQ----RVGNWPGVTVEKKTGE--------------F--------------------L 44 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE----EEEECTTSSSEEEEEE--------------E--------------------E
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC----CccCCCCceEEEEEEE--------------E--------------------E
Confidence 689999999999999999976421 1110 00000 00000 0 0
Q ss_pred hcCCCccccccchhHHhH---------HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 495 RNGSDVVLVDTAGRMQDN---------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr---------~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
..+..+.++||+|-.... ..+.+.. +...++|.+++|.+++. . ..+......+.... .
T Consensus 45 ~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~---~~~~~~d~vi~VvDas~---~----~~~~~l~~~l~~~~---~ 111 (256)
T 3iby_A 45 LGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS---VIDLEYDCIINVIDACH---L----ERHLYLTSQLFELG---K 111 (256)
T ss_dssp ETTEEEEEEECCCCSSCC------CHHHHHHHHH---HHHSCCSEEEEEEEGGG---H----HHHHHHHHHHTTSC---S
T ss_pred ECCeEEEEEeCCCcccccccccCCCHHHHHHHHH---HhhCCCCEEEEEeeCCC---c----hhHHHHHHHHHHcC---C
Confidence 112356788888864321 1233222 22267999999887765 1 12223344444332 3
Q ss_pred ceEEEeccccccccchh---HHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 566 IDGILLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 566 it~IIlTK~De~~~~vG---~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
...+++||+|... .-+ .+-.+....|.|++.++ +|+++.+
T Consensus 112 pvilv~NK~Dl~~-~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (256)
T 3iby_A 112 PVVVALNMMDIAE-HRGISIDTEKLESLLGCSVIPIQAHKNIGIPA 156 (256)
T ss_dssp CEEEEEECHHHHH-HTTCEECHHHHHHHHCSCEEECBGGGTBSHHH
T ss_pred CEEEEEEChhcCC-cCCcHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 5689999999863 322 23446677899999887 6776654
No 179
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.02 E-value=7.4e-06 Score=76.92 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=58.9
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
..+.++||+|..... .+..... .+.+.+|+|-+++.... ...+...+..+..... ..-.+++||+|..
T Consensus 93 ~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~D~~~~~s----~~~~~~~~~~i~~~~~--~piilv~NK~D~~ 160 (208)
T 3clv_A 93 IKFDIWDTAGQERYA-SIVPLYY-----RGATCAIVVFDISNSNT----LDRAKTWVNQLKISSN--YIIILVANKIDKN 160 (208)
T ss_dssp EEEEEEECTTGGGCT-TTHHHHH-----TTCSEEEEEEETTCHHH----HHHHHHHHHHHHHHSC--CEEEEEEECTTCC
T ss_pred eEEEEEECCCcHHHH-HHHHHHh-----cCCCEEEEEEECCCHHH----HHHHHHHHHHHHhhCC--CcEEEEEECCCcc
Confidence 457889999965533 2334444 57788888877654321 1122223333332111 4568999999942
Q ss_pred c--cchhHHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 578 D--DKVGAALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 578 ~--~~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
. ...-.+..++...+.|++.++ +|+++.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 1 123556777788899988887 676665543
No 180
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.01 E-value=2.1e-05 Score=73.01 Aligned_cols=149 Identities=15% Similarity=0.097 Sum_probs=78.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|++-...... ..+ .+. .....+.. .
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~ 62 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDY------EPT--KAD---------SYRKKVVL------------------D 62 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC------CTT--CCE---------EEEEEEEE------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCCCcC------CCc--cce---------EEEEEEEE------------------C
Confidence 357999999999999999998853211000 000 000 00000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+++.. +.......+...+...... ....-.+++||+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~ 133 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEM-ESFAATADFREQILRVKED--ENVPFLLVGNKS 133 (187)
T ss_dssp TEEEEEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHCC--TTCCEEEEEECG
T ss_pred CEEEEEEEEECCCCcccHH-HHHHHh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEECc
Confidence 0123567899999664332 333333 356777776665432 1111121222222222221 123457999999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 134 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 171 (187)
T 2a9k_A 134 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171 (187)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred cccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 98632 23456667778888877766 66666554
No 181
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.01 E-value=2.7e-05 Score=70.75 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=75.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|+.||||||+++.+++--..... ..+ .+. .....+.. ..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~~ 49 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFVEDY------EPT--KAD---------SYRKKVVL------------------DG 49 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCC------CTT--CCE---------EEEEEEEE------------------TT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccCCCC------CCC--cce---------EEEEEEEE------------------CC
Confidence 47999999999999999998853211000 000 000 00000000 01
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
..+...++||+|....+. +..... .+.+.+++|-+++... .......+...+...... ....-.+++||+|
T Consensus 50 ~~~~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~D 120 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEME-SFAATADFREQILRVKED--ENVPFLLVGNKSD 120 (168)
T ss_dssp EEEEEEEEECCC---CHH-HHHHHH-----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCC--TTSCEEEEEECGG
T ss_pred EEEEEEEEECCCcchhHH-HHHHHh-----hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECcc
Confidence 123567899999665332 333333 3567777766654321 111111221222222221 1234579999999
Q ss_pred cccc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 576 TIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 576 e~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 121 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T 1u8z_A 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157 (168)
T ss_dssp GGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred ccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence 8632 13356666777888877766 66666544
No 182
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.00 E-value=7.6e-06 Score=75.91 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+.+-...... +. ...+..+...... ..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------~~-----------~t~~~~~~~~~~~-------------~~ 56 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGT---------FI-----------STVGIDFRNKVLD-------------VD 56 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCC---------CC-----------CCCSCEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC---------cC-----------CceeeEEEEEEEE-------------EC
Confidence 457999999999999999998763211000 00 0000000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|....+. +..... .+.+.+++|-+++... . ...+...+..+.........-.+++||+
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~---s-~~~~~~~~~~i~~~~~~~~piilv~nK~ 126 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRS-VTHAYY-----RDAHALLLLYDVTNKA---S-FDNIQAWLTEIHEYAQHDVALMLLGNKV 126 (180)
T ss_dssp TEEEEEEEEECCCC---------CCG-----GGCSEEEEEEETTCHH---H-HHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred CEEEEEEEEeCCCcHHHHH-HHHHHc-----cCCCEEEEEEECCCHH---H-HHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 0123567889999654321 222122 4578888876665422 1 1112222222222111223557899999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 127 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp STTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 986322 2345566777889988776 66665543
No 183
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.00 E-value=1.6e-05 Score=72.50 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=54.3
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...++||+|....+ .+..... .+.+.+++|-+++.. .. ...+...+..+.........-.++.||+|...
T Consensus 53 ~~~~~D~~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~---~s-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 53 KFEIWDTAGQERFA-SLAPXYY-----RNAQAALVVYDVTKP---QS-FIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp EEEEEEECCSGGGG-GGHHHHH-----TTCSEEEEEEETTCH---HH-HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCChhhh-hhhhhhh-----ccCcEEEEEEecCCh---HH-HHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 46788999966433 2333334 567888887766542 11 12222223333222112234568899999863
Q ss_pred c----c--hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 579 D----K--VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 579 ~----~--vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
. . .-.+..++...+.|+..++ +|+++.+
T Consensus 123 ~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158 (170)
T ss_dssp SSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 2 1 1234556667788877766 5655543
No 184
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=1.6e-06 Score=89.85 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=28.3
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE---ccccc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDT 453 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I---~~~Dt 453 (621)
.|+ +++|+|||||||||||+.|+|++.|..|+|.+ .|.++
T Consensus 168 ~ge--iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 168 KGK--ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp SSS--EEEEECSTTSSHHHHHHHHSTTCCCC-------------C
T ss_pred cCC--eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCc
Confidence 567 99999999999999999999999999999999 67665
No 185
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.00 E-value=6.6e-06 Score=75.51 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=72.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|+.||||||+++.+++.......... .+.+.+... +.+ ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~-------------~~~--------------------~~ 48 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERR-------------IMV--------------------DK 48 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEE-------------EEE--------------------TT
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEE-------------EEE--------------------CC
Confidence 46899999999999999998753221111110 011111100 000 00
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEeccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKF 574 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~ 574 (621)
..+...+.||+|.......+..... .+.+.+++|-+.+. .. ....+...+..+..... ....-.++.||+
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~-----~~~d~~i~v~d~~~---~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 119 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCL-----QTGDAFLIVFSVTD---RR-SFSKVPETLLRLRAGRPHHDLPVILVGNKS 119 (169)
T ss_dssp EEEEEEEECCCCC--------CHHH-----HHCSEEEEEEETTC---HH-HHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred eEEEEEEEECCCccccchhhhhhhh-----ccCCEEEEEEECCC---hH-HHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence 1234567888887654332322222 34677777655543 11 11222222333322111 123457899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T 3q85_A 120 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 157 (169)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred chhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHH
Confidence 97522 22345667778888887766 56665543
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.00 E-value=1e-05 Score=92.80 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=72.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhh--cCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHH
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ--HKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAK 487 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~--~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~ 487 (621)
+..++ .++|+|++|+|||||+..|++...+ ..|+| ..+...... ..+.+ .+ ++.+.....
T Consensus 6 ~~~~~--~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~--~~~e~--~~--giti~~~~~--------- 67 (665)
T 2dy1_A 6 GAMIR--TVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDY--TPEAK--LH--RTTVRTGVA--------- 67 (665)
T ss_dssp CCCEE--EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCC--SHHHH--HT--TSCCSCEEE---------
T ss_pred cCCCc--EEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccC--CHHHH--hc--CCeEEecce---------
Confidence 34555 9999999999999999999987654 45665 222221100 00000 00 111000000
Q ss_pred HHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCce
Q 007024 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (621)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (621)
.+....+...++||+|.........+.+. ..|..++|.+|+.|++.... +.+..+.... ...
T Consensus 68 ----~~~~~~~~~nliDTpG~~~f~~~~~~~l~------~ad~~ilVvD~~~g~~~qt~-----~~~~~~~~~~---ip~ 129 (665)
T 2dy1_A 68 ----PLLFRGHRVFLLDAPGYGDFVGEIRGALE------AADAALVAVSAEAGVQVGTE-----RAWTVAERLG---LPR 129 (665)
T ss_dssp ----EEEETTEEEEEEECCCSGGGHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-----HHHHHHHHTT---CCE
T ss_pred ----EEeeCCEEEEEEeCCCccchHHHHHHHHh------hcCcEEEEEcCCcccchhHH-----HHHHHHHHcc---CCE
Confidence 00011345678999997654443444443 34556665669999997654 2233332222 334
Q ss_pred EEEecccccc
Q 007024 568 GILLTKFDTI 577 (621)
Q Consensus 568 ~IIlTK~De~ 577 (621)
.++++|+|..
T Consensus 130 ilv~NKiD~~ 139 (665)
T 2dy1_A 130 MVVVTKLDKG 139 (665)
T ss_dssp EEEEECGGGC
T ss_pred EEEecCCchh
Confidence 6889999986
No 187
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.99 E-value=3.9e-06 Score=81.54 Aligned_cols=38 Identities=32% Similarity=0.303 Sum_probs=30.8
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcc
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAA 450 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~ 450 (621)
.+|+ +++|+||||||||||+++|++++.+. .|.|.+.+
T Consensus 20 ~~g~--~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQ--LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCE--EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCe--EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3566 99999999999999999999999975 34444443
No 188
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.98 E-value=5.8e-05 Score=74.21 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=95.7
Q ss_pred eEEEEEec-CCCCHHHHHHHHHHhHhhc-CcEEEEcccccceeee------eehhhhhhhh-------------------
Q 007024 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQH-KVSVMMAACDTFRSGA------VEQLRTHARR------------------- 468 (621)
Q Consensus 416 ~iiaLVGp-NGvGKTTlLakLAg~L~~~-~GkV~I~~~Dt~Riga------veQl~~~~~~------------------- 468 (621)
++|+|++. .|+||||+...||..+... +.+|+++.+|..+... ......+.+.
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQHI 84 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEEE
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEec
Confidence 48888876 4799999999999999887 8899999999752111 1100011000
Q ss_pred -cccceeecCCCCCH-------HHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC
Q 007024 469 -LQVPIFEKGYEKDP-------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG 540 (621)
Q Consensus 469 -L~v~l~~~~~~~d~-------~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G 540 (621)
-++.+... +... .....+.++.+. ..||++++|++++... ....+. ...|.+++|.+|.
T Consensus 85 ~~~l~~l~~--~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~---~~~~~l-----~~ad~viiv~~~~-- 151 (245)
T 3ea0_A 85 SPSLDLIPS--PATFEKIVNIEPERVSDLIHIAA-SFYDYIIVDFGASIDH---VGVWVL-----EHLDELCIVTTPS-- 151 (245)
T ss_dssp ETTEEEECC--CSSHHHHHHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCT---THHHHG-----GGCSEEEEEECSS--
T ss_pred CCCeEEEcC--CCChHhhhcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCch---HHHHHH-----HHCCEEEEEecCc--
Confidence 02222211 1111 122334444433 3699999999887643 223333 4568888877763
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEEE
Q 007024 541 NDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597 (621)
Q Consensus 541 lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~f 597 (621)
..+ .....+.+..+.........-++|+++++.- .... .-.+...+|.|+..
T Consensus 152 --~~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-~~~~-~~~~~~~~~~~v~~ 203 (245)
T 3ea0_A 152 --LQS-LRRAGQLLKLCKEFEKPISRIEIILNRADTN-SRIT-SDEIEKVIGRPISK 203 (245)
T ss_dssp --HHH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC-TTSC-HHHHHHHHTSCEEE
T ss_pred --HHH-HHHHHHHHHHHHHhCCCccceEEEEecCCCC-CCCC-HHHHHHHhCCCeEE
Confidence 222 2334455555554443456678999999875 2222 23455667888764
No 189
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.98 E-value=1.5e-05 Score=73.92 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=79.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+++--......- -.+.+. ... .+.+ .
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~-~~~------------~~~~--------------------~ 57 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQES-TIGAAF-FSQ------------TLAV--------------------N 57 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCC-CSCCSE-EEE------------EEEE--------------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCC-CceeEE-EEE------------EEEE--------------------C
Confidence 34799999999999999999875321110000 000000 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|....+ .+..... .+.+.+++|-+++.. .. .......+..+.........-.+++||+
T Consensus 58 ~~~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~---~s-~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 127 (181)
T 2efe_B 58 DATVKFEIWDTAGQERYH-SLAPMYY-----RGAAAAIIVFDVTNQ---AS-FERAKKWVQELQAQGNPNMVMALAGNKS 127 (181)
T ss_dssp TEEEEEEEEECCCSGGGG-GGTHHHH-----TTCSEEEEEEETTCH---HH-HHHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEeCCCChhhh-hhhHHHh-----ccCCEEEEEEECCCH---HH-HHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 112356789999965432 2223333 567888887665432 21 1222233333332222234457899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|.... ..-.+..++...+.|+..++ +|+++.+
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred cccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 98632 13455667777888877766 5655544
No 190
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.98 E-value=7e-06 Score=89.68 Aligned_cols=114 Identities=25% Similarity=0.257 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..|+|||.+|||||||++.|++. ++.+ +.+........ .+.. +..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~------~~~~----------v~~~~g~t~~~---~~~~----------------~~~ 68 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE------RISI----------VEDTPGVTRDR---IYSS----------------AEW 68 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE------EEC---------------------C---EEEE----------------CTT
T ss_pred CEEEEECCCCCcHHHHHHHHhCC------CCcc----------cCCCCCcceeE---EEEE----------------EEE
Confidence 38999999999999999998651 1111 11110000000 0000 011
Q ss_pred cCCCccccccchhH-------HhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceE
Q 007024 496 NGSDVVLVDTAGRM-------QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (621)
Q Consensus 496 ~~~d~vliDtSGg~-------qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (621)
.+....++||+|-. .+-..++.... .++|++|||.++..++...+. .....+.... ..-.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~-----~~ad~il~VvD~~~~~~~~d~-----~l~~~l~~~~---~pvi 135 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM-----DEADVIIFMVNGREGVTAADE-----EVAKILYRTK---KPVV 135 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHH-----HHCSEEEEEEESSSCSCHHHH-----HHHHHHTTCC---SCEE
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhH-----hhCCEEEEEEeCCCCCChHHH-----HHHHHHHHcC---CCEE
Confidence 34567899999932 22222222222 567899998888888877653 2223333322 3457
Q ss_pred EEecccccc
Q 007024 569 ILLTKFDTI 577 (621)
Q Consensus 569 IIlTK~De~ 577 (621)
++++|+|..
T Consensus 136 lV~NK~D~~ 144 (456)
T 4dcu_A 136 LAVNKLDNT 144 (456)
T ss_dssp EEEECC---
T ss_pred EEEECccch
Confidence 899999986
No 191
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.98 E-value=1.3e-05 Score=75.69 Aligned_cols=149 Identities=17% Similarity=0.124 Sum_probs=81.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|++--..... ..+ +| +.+...... ..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~------~~t--~~-------------~~~~~~~~~-------------~~ 70 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDS------RTT--IG-------------VEFSTRTVM-------------LG 70 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSC------CCC--SS-------------EEEEEEEEE-------------ET
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC------CCc--cc-------------eeEEEEEEE-------------EC
Confidence 457999999999999999998863211100 000 00 000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+ .+..... .+.+.+|+|-+++.. .. ...+...+..+.........-.+++||+
T Consensus 71 ~~~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~vi~v~D~~~~---~s-~~~~~~~l~~i~~~~~~~~piilv~nK~ 140 (193)
T 2oil_A 71 TAAVKAQIWDTAGLERYR-AITSAYY-----RGAVGALLVFDLTKH---QT-YAVVERWLKELYDHAEATIVVMLVGNKS 140 (193)
T ss_dssp TEEEEEEEEEESCCCTTC-TTHHHHH-----TTCCEEEEEEETTCH---HH-HHTHHHHHHHHHTTSCTTCEEEEEEECG
T ss_pred CEEEEEEEEeCCCchhhh-hhhHHHh-----ccCCEEEEEEECCCH---HH-HHHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 112346788999865432 2333334 577888887665432 21 1222233334433222234568999999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|.... ..-.+..++...+.|+..++ +|+++.+|
T Consensus 141 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 141 DLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 98632 12345566677888888876 66666554
No 192
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.97 E-value=3.5e-05 Score=73.11 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=78.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|.+-...... ..+ .+. .....+.. .
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~ 58 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDY------EPT--KAD---------SYRKKVVL------------------D 58 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC------CTT--CCE---------EEEEEEEE------------------T
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCCCCC------CCc--cce---------EEEEEEEE------------------C
Confidence 357999999999999999998753211000 000 000 00000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|...... +..... .+.+.+++|-+.+.. +.......+...+...... ....-.+++||+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~~piilv~nK~ 129 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAA-IRDNYF-----RSGEGFLCVFSITEM-ESFAATADFREQILRVKED--ENVPFLLVGNKS 129 (206)
T ss_dssp TEEEEEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHTTC--SCCCEEEEEECT
T ss_pred CEEEEEEEEcCCChhhhHH-HHHHHH-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCCEEEEEecc
Confidence 0123567889999654332 333333 356777776655432 1111111221222222211 123457999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|..... .-.+..++...+.|+..++ +|+++.+|
T Consensus 130 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 130 DLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 986321 3456667778899988877 67766654
No 193
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.96 E-value=1.4e-05 Score=73.64 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=53.4
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...++||+|....+. +..... .+.+.+++|-+++.. .. ...+...+..+.........-.+++||+|...
T Consensus 64 ~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~---~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 64 RLQLWDTAGQERFRS-LIPSYI-----RDSTVAVVVYDITNT---NS-FHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD 133 (179)
T ss_dssp EEEEEEECCSGGGGG-GSHHHH-----HTCSEEEEEEETTCH---HH-HHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG
T ss_pred EEEEEECCCcHHHHH-HHHHHh-----cCCCEEEEEEECCCH---HH-HHHHHHHHHHHHHhcCCCCcEEEEEECCcccc
Confidence 467889999654332 222222 467888877665432 11 11122222222211112234578999999863
Q ss_pred cc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 579 DK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 579 ~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
.+ .-.+...+...+.|+..++ +|+++.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 22 2345566777888888877 5655543
No 194
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.95 E-value=9.1e-06 Score=74.20 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=79.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.|++-....... . + .+..+...... ..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~------~-----------t----~~~~~~~~~~~-------------~~ 50 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK------K-----------T----IGVDFLERQIQ-------------VN 50 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSS------C-----------C----CSSSEEEEEEE-------------ET
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCC------C-----------c----eEEEEEEEEEE-------------EC
Confidence 3579999999999999999998532111000 0 0 00000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+ .+..... .+.+.+++|-+++... .......+...+.... ....-.+++||+
T Consensus 51 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~----~~~piilv~nK~ 119 (168)
T 1z2a_A 51 DEDVRLMLWDTAGQEEFD-AITKAYY-----RGAQACVLVFSTTDRE-SFEAISSWREKVVAEV----GDIPTALVQNKI 119 (168)
T ss_dssp TEEEEEEEECCTTGGGTT-CCCHHHH-----TTCCEEEEEEETTCHH-HHHTHHHHHHHHHHHH----CSCCEEEEEECG
T ss_pred CEEEEEEEEcCCCcHhHH-HHHHHHh-----cCCCEEEEEEECcCHH-HHHHHHHHHHHHHHhC----CCCCEEEEEECc
Confidence 012456788999965432 2223333 5778888876665421 1111111212222222 123457899999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred ccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 986321 3455667777899887776 66666543
No 195
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.95 E-value=4.9e-05 Score=71.58 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.4
Q ss_pred CceEEEEEecCCCCHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg 437 (621)
.+..++|+|+.||||||+++.|.+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345899999999999999999975
No 196
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.95 E-value=1.6e-05 Score=72.70 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=77.5
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|+.||||||+++.+.+-..+....- -.+.+ +... .+.+ ..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~-~~~~------------~~~~--------------------~~ 52 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINP-TIGAS-FMTK------------TVQY--------------------QN 52 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCC-CCSEE-EEEE------------EEEE--------------------TT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ceeEE-EEEE------------EEEE--------------------CC
Confidence 4799999999999999999976421110000 00000 0000 0000 01
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
......++||+|....+ .+..... .+.+.+++|-+++... . ...+...+..+........+-.++.||+|
T Consensus 53 ~~~~~~~~Dt~G~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~---s-~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFR-ALAPMYY-----RGSAAAIIVYDITKEE---T-FSTLKNWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEEEECCSGGGG-GGTHHHH-----TTCSEEEEEEETTCHH---H-HHHHHHHHHHHHHHSCTTSEEEEEEECTT
T ss_pred eEEEEEEEcCCCchhhh-cccHhhC-----cCCCEEEEEEECcCHH---H-HHHHHHHHHHHHHhCCCCCcEEEEEECCc
Confidence 12356789999975432 2233333 5678888776654421 1 12222233333322223344567789999
Q ss_pred ccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 576 TIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 576 e~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
..... .-.+..++...+.|+..++ +|+++.+
T Consensus 123 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp CGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 86321 2345556667788877766 5665544
No 197
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.94 E-value=6.1e-06 Score=86.56 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=38.8
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh--hcCcEEEEcccccce
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDTFR 455 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~--~~~GkV~I~~~Dt~R 455 (621)
.+.|++++|+|||||||||++++|++++. +.+|.|.+.+.|.|.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 35688999999999999999999999987 467899999998864
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.94 E-value=3.4e-06 Score=91.52 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=36.3
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+|+ +++|+|||||||||||+.|++++.+..|+|.+.+.++
T Consensus 166 ~gg--ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHG--IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSE--EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCC--eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 566 9999999999999999999999999999999987654
No 199
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.94 E-value=1.8e-05 Score=71.59 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=77.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++++|+.||||||+++.+++-...... ..+.. ......+.. ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~------~~~~~-----------~~~~~~~~~------------------~~ 48 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC------DPTIE-----------DSYRKQVVI------------------DG 48 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC------CTTCC-----------EEEEEEEEE------------------TT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc------CCccc-----------eEEEEEEEE------------------CC
Confidence 36899999999999999999863211100 00000 000000000 01
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
..+...++||+|....+. +..... ...+.+++|-+++.. +.......+...+...... ....-.+++||+|
T Consensus 49 ~~~~~~~~D~~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~--~~~p~iiv~nK~D 119 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSA-MRDQYM-----RTGEGFLCVFAINNT-KSFEDIHQYREQIKRVKDS--DDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEEEECCCCSSCCH-HHHHHH-----HHCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHTC--SCCCEEEEEECTT
T ss_pred EEEEEEEEECCCchhhhH-HHHHhh-----ccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCC--CCCcEEEEEEchh
Confidence 123567889999654322 222233 345677666555422 1111222222233333221 1234579999999
Q ss_pred cccc--chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 576 TIDD--KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 576 e~~~--~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp CSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHH
T ss_pred hhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 7631 23455667777899988877 56655543
No 200
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.94 E-value=1.5e-05 Score=75.51 Aligned_cols=148 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|++-...... ..+ +| ..+...... ..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~~--~~-------------~~~~~~~~~-------------~~ 68 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNI------SPT--IG-------------ASFMTKTVP-------------CG 68 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTC------CCC--SS-------------EEEEEEEEE-------------CS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCc------CCC--cc-------------eeEEEEEEE-------------eC
Confidence 357999999999999999999863211000 000 00 000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+.+... ..... ...+..+.........-.+++||+
T Consensus 69 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~iilV~d~~~~~-s~~~~---~~~~~~i~~~~~~~~piiiv~NK~ 138 (192)
T 2fg5_A 69 NELHKFLIWDTAGQERFHS-LAPMYY-----RGSAAAVIVYDITKQD-SFYTL---KKWVKELKEHGPENIVMAIAGNKC 138 (192)
T ss_dssp SSEEEEEEEEECCSGGGGG-GTHHHH-----TTCSEEEEEEETTCTH-HHHHH---HHHHHHHHHHSCTTCEEEEEEECG
T ss_pred CEEEEEEEEcCCCchhhHh-hhHHhh-----ccCCEEEEEEeCCCHH-HHHHH---HHHHHHHHHhCCCCCcEEEEEECc
Confidence 0123567899999665332 223333 5678888877665432 22222 223333322211224557899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|.... ..-.+..++...+.|+..++ +|+++.+
T Consensus 139 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp GGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 98631 23456667777888887776 6665544
No 201
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.94 E-value=6.5e-06 Score=79.65 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=36.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
.+++|+|++||||||+++.|++++.+.+|.|.+.+.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4999999999999999999999999999999998888754
No 202
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.94 E-value=6.3e-05 Score=75.33 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=89.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeee-----eeh-------hhh------hhhh-----cccce
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA-----VEQ-------LRT------HARR-----LQVPI 473 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Riga-----veQ-------l~~------~~~~-----L~v~l 473 (621)
+|+|.|..|+||||+...||..+...+.+|+++.+|...... ... +.. +.+. -++.+
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~l~v 82 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYGGIRC 82 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGGGCEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCCCeeE
Confidence 778889999999999999999998888899999999743110 000 000 0000 02222
Q ss_pred eecCCCC----CH-HHHH--HHHHHHHh--hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHH
Q 007024 474 FEKGYEK----DP-AIVA--KEAIQEAT--RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAV 544 (621)
Q Consensus 474 ~~~~~~~----d~-~~ia--~~al~~~~--~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~ 544 (621)
...+... .. .... ...+..+. ...||++++||+|+...+. +...+. ....|.+++|.+|.. ...
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~yD~iiiD~~~~~~~~~-~~~~~~----~~~aD~viiv~~~~~--~s~ 155 (269)
T 1cp2_A 83 VESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFYDVLGDVVCGG-FAMPIR----EGKAQEIYIVASGEM--MAL 155 (269)
T ss_dssp EECCCCCTTSSCHHHHHHHHHHHHHHTTCCCTTCSEEEEEEECSSCSTT-TTHHHH----TTSCCEEEEEECSSH--HHH
T ss_pred EeCCCchhhccccCcchhhHHHHHHHHHhhccCCCEEEEeCCchhhhhh-hhhhhh----HhhCCEEEEeecCch--hhH
Confidence 2211110 01 1111 11222221 2358999999988653221 111121 135688888776632 122
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 545 DQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 545 ~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
.....+.+.+..+... ....+-++|+++++.. .....+-.+...+|.|+.
T Consensus 156 ~~~~~~~~~l~~~~~~-~~~~~~gvv~N~~~~~-~~~~~~~~l~~~~~~~v~ 205 (269)
T 1cp2_A 156 YAANNISKGIQKYAKS-GGVRLGGIICNSRKVA-NEYELLDAFAKELGSQLI 205 (269)
T ss_dssp HHHHHHHHHHHHHBTT-BBCEEEEEEEECCSSS-CCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHhc-CCCcEEEEEeecCCcc-hhHHHHHHHHHHcCCccc
Confidence 2222233444444322 1223568999999754 223334445567788864
No 203
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=73.82 Aligned_cols=149 Identities=14% Similarity=0.066 Sum_probs=72.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.|||||||++.|++-....... -.+.+.+. . . +.+ .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~--~~~~~~~~-~----------~--~~~--------------------~ 48 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE--QLGEDVYE-R----------T--LTV--------------------D 48 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CC--CSSSSEEE-E----------E--EEE--------------------T
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccC--ccccceeE-E----------E--EEE--------------------C
Confidence 3579999999999999999987532111000 01111100 0 0 000 0
Q ss_pred hcCCCccccccchhHHhH-HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEec
Q 007024 495 RNGSDVVLVDTAGRMQDN-EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLT 572 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr-~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlT 572 (621)
...+...+.||+|..... ..+..... ...+.+++|-+.+. ... ...+...+..+.... .....-.++.|
T Consensus 49 ~~~~~~~~~D~~g~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~---~~s-~~~~~~~~~~l~~~~~~~~~piilv~N 119 (175)
T 2nzj_A 49 GEDTTLVVVDTWEAEKLDKSWSQESCL-----QGGSAYVIVYSIAD---RGS-FESASELRIQLRRTHQADHVPIILVGN 119 (175)
T ss_dssp TEEEEEEEECCC-------CHHHHHTT-----TSCSEEEEEEETTC---HHH-HHHHHHHHHHHHHCC----CCEEEEEE
T ss_pred CEEEEEEEEecCCCCccchhhhHHhhc-----ccCCEEEEEEECCC---HHH-HHHHHHHHHHHHHhhccCCCCEEEEEE
Confidence 012345688999876531 12222222 45677776655432 211 122222333333221 11234579999
Q ss_pred cccccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 573 KFDTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 573 K~De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|+|....+ .-.+..++...+.|+..++ +|+++.+|
T Consensus 120 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (175)
T 2nzj_A 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAEL 159 (175)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred ChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 99986321 2234455667788887776 67766654
No 204
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.93 E-value=1.7e-05 Score=73.37 Aligned_cols=149 Identities=14% Similarity=0.004 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.|++-...... ..+.+..+ ...+.. .
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~------~~t~~~~~-----------~~~~~~------------------~ 53 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDY------DPTIEDSY-----------TKICSV------------------D 53 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCSSC------CTTCCEEE-----------EEEEEE------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCcccc------CCCcCceE-----------EEEEEE------------------C
Confidence 457999999999999999999864111000 00000000 000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|....+. +..... .+.+.+++|-+.+...........+.+++...... ...-.+++||+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~piilv~nK~ 124 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGA-MREQYM-----RAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD---DFPVVLVGNKA 124 (181)
T ss_dssp TEEEEEEEEECCCTTTTSC-CHHHHH-----HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS---CCCEEEEEECG
T ss_pred CEEEEEEEEECCCchhhHH-HHHHHH-----hhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECc
Confidence 0123456789998654321 222222 34577777665543211111112222222222221 23457999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 125 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 162 (181)
T 2fn4_A 125 DLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA 162 (181)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 986321 2335556667788877776 56665543
No 205
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.93 E-value=8.5e-06 Score=74.04 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...++||+|...... +..... .+.+.+++|-+.+... .......+...+...... ....-.+++||+|...
T Consensus 52 ~~~l~D~~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 52 VLEILDTAGTEQFAS-MRDLYI-----KNGQGFILVYSLVNQQ-SFQDIKPMRDQIIRVKRY--EKVPVILVGNKVDLES 122 (167)
T ss_dssp EEEEEECCCTTCCHH-HHHHHH-----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTT--SCCCEEEEEECGGGGG
T ss_pred EEEEEECCCchhhHH-HHHHHh-----ccCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC--CCCCEEEEEECCcccc
Confidence 467889999654332 222222 3456777665554321 111111111222222211 1234579999999753
Q ss_pred cc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 579 DK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 579 ~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
.+ .-.+..++...+.|+..++ +|+++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence 21 2345566777889988776 4444433
No 206
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.92 E-value=8.1e-06 Score=82.59 Aligned_cols=140 Identities=20% Similarity=0.275 Sum_probs=80.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE-EcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM-MAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~-I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
..++|+|.+||||||+++.|+|.... +. +.+...... ...+ .
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~----~~~~pg~tv~~~-------------~~~~--------------------~ 48 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY----VANWPGVTVEKK-------------EGVF--------------------T 48 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE----EEECTTSCCEEE-------------EEEE--------------------E
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc----ccCCCCceEEEE-------------EEEE--------------------E
Confidence 47999999999999999999763211 10 001100000 0000 0
Q ss_pred hcCCCccccccchhHHh-----HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 495 RNGSDVVLVDTAGRMQD-----NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qq-----r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
..+..+.++||+|.... ...+.+.+. ...+++.+++|-+++.. + ... ..+..+.... ....+
T Consensus 49 ~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~ii~V~D~t~~-~--~~~----~~~~~l~~~~---~pvil 115 (258)
T 3a1s_A 49 YKGYTINLIDLPGTYSLGYSSIDEKIARDYL---LKGDADLVILVADSVNP-E--QSL----YLLLEILEME---KKVIL 115 (258)
T ss_dssp ETTEEEEEEECCCCSSCCSSSHHHHHHHHHH---HHSCCSEEEEEEETTSC-H--HHH----HHHHHHHTTT---CCEEE
T ss_pred ECCeEEEEEECCCcCccCCCCHHHHHHHHHH---hhcCCCEEEEEeCCCch-h--hHH----HHHHHHHhcC---CCEEE
Confidence 11345678899886431 122333332 22588999988887653 1 111 2333333322 34589
Q ss_pred Eeccccccccchh---HHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 570 LLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 570 IlTK~De~~~~vG---~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
++||+|.. ..-+ .+-.+....|.|++.++ +|+++.+
T Consensus 116 v~NK~Dl~-~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 116 AMTAIDEA-KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEE 156 (258)
T ss_dssp EEECHHHH-HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHH
T ss_pred EEECcCCC-CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHH
Confidence 99999986 3322 24566778899999887 7777654
No 207
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.91 E-value=3.5e-06 Score=99.47 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=51.9
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCc--EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd--lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++||+.||++|. .+|+ ++|| ||||+|||+.++. .+.+.|+.+.. .+.++|++|.
T Consensus 459 ~r~~~~LSGGe~QRv~LAraL~-----~~p~~~lllL-DEPT~gLD~~~~~-~l~~~L~~L~~----~G~TvivVtH 524 (916)
T 3pih_A 459 SRSATTLSGGESQRIRLATQIG-----SGLTGVIYVL-DEPTIGLHPRDTE-RLIKTLKKLRD----LGNTVIVVEH 524 (916)
T ss_dssp TSBGGGCCHHHHHHHHHHHHHH-----TTCCSCEEEE-ECTTTTCCGGGHH-HHHHHHHHTTT----TTCEEEEECC
T ss_pred cCCcccCCHHHHHHHHHHHHHh-----hCCCCcEEEE-ECCccCCCHHHHH-HHHHHHHHHHh----cCCEEEEEeC
Confidence 5667889999999999999999 8776 7777 9999999999874 44467777654 3678888875
No 208
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.91 E-value=1.5e-05 Score=73.82 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=80.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+++--.+. .+....++.++......+ .
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~---------------------~~~~t~~~~~~~~~~~~~------------~ 52 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK---------------------QYKQTIGLDFFLRRITLP------------G 52 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH---------------------HHHHTTTSSEEEEEEEET------------T
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC---------------------CCCCceeEEEEEEEEEeC------------C
Confidence 3579999999999999999998532100 000001111100000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...+.||+|....+ .+..... .+.+.+++|-+++... .......+...+..+.........-.++.||+
T Consensus 53 ~~~~~~~~~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGG-KMLDKYI-----YGAQGVLLVYDITNYQ-SFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp TEEEEEEEEECTTCCTTC-TTHHHHH-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred CCEEEEEEEECCCCcccc-chhhHHH-----hhCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 012456788999965432 2223333 5778888887765422 11112222222333221101122247899999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 986321 2345566777899988877 67666543
No 209
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.90 E-value=4.5e-06 Score=80.86 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=23.6
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
+|+ +++|+||||||||||+++|++++.
T Consensus 3 ~g~--~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPR--PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --C--CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCc
Confidence 466 899999999999999999999885
No 210
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.90 E-value=3.4e-05 Score=80.37 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=31.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH--------hhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL--------LQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L--------~~~~GkV~I~~~Dt 453 (621)
+++|+|+|||||||+|+.|++.. .++.|.|.|++.++
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEE
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHH
Confidence 89999999999999999999986 55667777766554
No 211
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.90 E-value=5.5e-05 Score=77.80 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=86.7
Q ss_pred ceEEEEEecC-CCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeeh-----hhhhhhh----------------cccc
Q 007024 415 PYVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQ-----LRTHARR----------------LQVP 472 (621)
Q Consensus 415 p~iiaLVGpN-GvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQ-----l~~~~~~----------------L~v~ 472 (621)
+++|+|+|+. |+||||+...||..+...+.+|+++.+|..+...... ...+.+. -++.
T Consensus 92 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~ 171 (286)
T 3la6_A 92 NNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFD 171 (286)
T ss_dssp CCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCEE
Confidence 4599999975 8999999999999998888899999999854211100 0001000 1222
Q ss_pred eeecCC-CCCHHH-----HHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 473 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 473 l~~~~~-~~d~~~-----ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+...+. ..++.+ ...+.++.+. ..||++++||+....-. -+..+. ...|.+|+|.+|... ....
T Consensus 172 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~--da~~l~-----~~aD~vllVv~~~~~--~~~~ 241 (286)
T 3la6_A 172 LIPRGQVPPNPSELLMSERFAELVNWAS-KNYDLVLIDTPPILAVT--DAAIVG-----RHVGTTLMVARYAVN--TLKE 241 (286)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCT--HHHHHT-----TTCSEEEEEEETTTS--BHHH
T ss_pred EEeCCCCCCCHHHHhchHHHHHHHHHHH-hCCCEEEEcCCCCcchH--HHHHHH-----HHCCeEEEEEeCCCC--cHHH
Confidence 222221 123332 2334444433 36899999998765321 123344 556888887766332 2222
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 547 LSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+++..+...+ ..+.++|+++++.-
T Consensus 242 ---~~~~~~~l~~~g--~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 242 ---VETSLSRFEQNG--IPVKGVILNSIFRR 267 (286)
T ss_dssp ---HHHHHHHHHHTT--CCCCEEEEEEECCC
T ss_pred ---HHHHHHHHHhCC--CCEEEEEEcCcccc
Confidence 223444444332 45779999999875
No 212
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.89 E-value=8.6e-06 Score=77.91 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|.+-...... ....++.+...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------------~~t~~~~~~~~~~~-------------~~ 53 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDY---------------------ISTIGVDFKIKTVE-------------LD 53 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTC---------------------CCSSCCCEEEEEEE-------------ET
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC---------------------CCcccceeEEEEEE-------------EC
Confidence 357999999999999999998763211100 00000000000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +.... ..+.+.+|+|-+++.... ...+...+..+.........-.+++||+
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~vilv~d~~~~~s----~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (206)
T 2bcg_Y 54 GKTVKLQIWDTAGQERFRT-ITSSY-----YRGSHGIIIVYDVTDQES----FNGVKMWLQEIDRYATSTVLKLLVGNKC 123 (206)
T ss_dssp TEEEEEEEECCTTTTTTTC-CCGGG-----GTTCSEEEEEEETTCHHH----HHHHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEeCCChHHHHH-HHHHh-----ccCCCEEEEEEECcCHHH----HHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 0123567889999654221 11111 256788888777654321 1222222333322212224457999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
|....+ .-.+..++...+.|+.+++ +|+++.++.
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 124 DLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162 (206)
T ss_dssp TCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 986322 2345566777899988877 677665543
No 213
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.88 E-value=3.1e-06 Score=80.79 Aligned_cols=29 Identities=31% Similarity=0.212 Sum_probs=25.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~G 444 (621)
.+++|+|||||||||++++|++++.+..|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 38999999999999999999999874433
No 214
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.88 E-value=2.5e-05 Score=74.35 Aligned_cols=100 Identities=9% Similarity=0.006 Sum_probs=56.8
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +..... .+.+.+++|-+.+... . ...+...+..+.........-.+++||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~-s---~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRT-ITTAYY-----RGAMGFILMYDITNEE-S---FNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEECCSGGGHH-HHHTTG-----GGCSEEEEEEETTCHH-H---HHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEECCCchhhcc-hHHHhh-----cCCCEEEEEEECcCHH-H---HHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 3567899999765432 222222 5678888876665421 1 1222222333322111224557999999986
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
..+ .-.+..++...+.|+..++ +|+++.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 322 2345566777888887776 67776554
No 215
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.88 E-value=1.4e-05 Score=74.60 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=76.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.|||||||++.|.+-.......-. ..+.++ ..+.. .
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~---------------~~~~~------------------~ 48 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPT--IEDSYR---------------KQVVI------------------D 48 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT--CCEEEE---------------EEEEE------------------T
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--chheEE---------------EEEEE------------------C
Confidence 357999999999999999999753211100000 000000 00000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+.+... .......+...+..+... ....-.+++||+
T Consensus 49 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~ 119 (189)
T 4dsu_A 49 GETCLLDILDTAGQEEYSA-MRDQYM-----RTGEGFLCVFAINNTK-SFEDIHHYREQIKRVKDS--EDVPMVLVGNKC 119 (189)
T ss_dssp TEEEEEEEEECCCC---CT-THHHHH-----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHTTC--SCCCEEEEEECT
T ss_pred CcEEEEEEEECCCcHHHHH-HHHHHH-----hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECc
Confidence 0123456789999654322 222222 3467777765554321 111122222223222211 223457899999
Q ss_pred ccccc--chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDD--KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~--~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 120 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 120 DLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp TSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred cCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 98632 23456677788899988876 67766554
No 216
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=4.2e-05 Score=69.87 Aligned_cols=101 Identities=11% Similarity=0.131 Sum_probs=52.4
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+...++||+|....+. +.+... .+.+.+++|-+++.. +.......+...+..+.... ....-.+++||+|..
T Consensus 51 ~~~~~~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~-~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 51 CTLQITDTTGSHQFPA-MQRLSI-----SKGHAFILVYSITSR-QSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEECCSCSSCHH-HHHHHH-----HHCSEEEEEEETTCH-HHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGG
T ss_pred EEEEEEECCCchhhHH-HHHHhc-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHHhCCC-CCCCEEEEEEccccc
Confidence 3567899999764332 222222 345777776655421 11111122222333332211 123457999999976
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
..+ .-.+..++...+.|+..++ +|+++.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence 321 2344556677788877766 5555543
No 217
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.87 E-value=1.7e-05 Score=80.97 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=78.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|++|||||||++.|+|.....+ .. .|... ...... +.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~~--pg~tv------------------~~~~~~---------------~~ 46 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-NW--PGVTV------------------ERKSGL---------------VK 46 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-SS--SCCCC------------------SCEEEE---------------CT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-CC--CCCcE------------------EEEEEE---------------Ee
Confidence 35799999999999999999987421100 00 00000 000000 01
Q ss_pred hcCCCccccccchhHHh-----HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 495 RNGSDVVLVDTAGRMQD-----NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qq-----r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
. +....++||+|-..- ...+.+... ...++|++++|-+++.. .. +...+..+.... ....+
T Consensus 47 ~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~---~~~~~d~vi~V~D~t~~---e~----~~~~~~~l~~~~---~p~il 112 (272)
T 3b1v_A 47 K-NKDLEIQDLPGIYSMSPYSPEAKVARDYL---LSQRADSILNVVDATNL---ER----NLYLTTQLIETG---IPVTI 112 (272)
T ss_dssp T-CTTEEEEECCCCSCSSCSSHHHHHHHHHH---HTTCCSEEEEEEEGGGH---HH----HHHHHHHHHHTC---SCEEE
T ss_pred c-CCeEEEEECCCcCccCCCChHHHHHHHHH---hcCCCCEEEEEecCCch---Hh----HHHHHHHHHhcC---CCEEE
Confidence 1 345678899885432 223444333 12479999888777651 11 112223333322 34578
Q ss_pred Eeccccccccchh---HHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 570 LLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 570 IlTK~De~~~~vG---~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+++|+|.. ...+ .+-.+....|.|++.++ +|+++.+
T Consensus 113 v~NK~Dl~-~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 113 ALNMIDVL-DGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp EEECHHHH-HHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred EEEChhhC-CcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 99999986 3322 23456677799988877 6766544
No 218
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.87 E-value=1.7e-05 Score=80.85 Aligned_cols=138 Identities=19% Similarity=0.165 Sum_probs=76.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE-cccccc-eeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM-AACDTF-RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I-~~~Dt~-RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
..++|+|.+|||||||++.|+|... .+.- .+.... ..+. +
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~----~v~~~~g~t~~~~~~~--------------~-------------------- 45 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ----RVGNWAGVTVERKEGQ--------------F-------------------- 45 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE----EEEECTTSSSEEEEEE--------------E--------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc----ccCCCCCeeEEEEEEE--------------E--------------------
Confidence 4799999999999999999976421 1110 011000 0000 0
Q ss_pred hhcCCCccccccchhHHh---------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 494 TRNGSDVVLVDTAGRMQD---------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qq---------r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
...+..+.++||+|...- ...+.+.. +...++|++++|.+++. .... ...+..+....
T Consensus 46 ~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~---~~~~~~d~ii~VvD~~~---~~~~----~~~~~~l~~~~--- 112 (274)
T 3i8s_A 46 STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY---ILSGDADLLINVVDASN---LERN----LYLTLQLLELG--- 112 (274)
T ss_dssp ECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH---HHHTCCSEEEEEEEGGG---HHHH----HHHHHHHHHHT---
T ss_pred EeCCCceEEEECcCCCccccccccCCHHHHHHHHH---HhhcCCCEEEEEecCCC---hHHH----HHHHHHHHhcC---
Confidence 011335667888884321 11222222 22368999999887765 1111 12222332222
Q ss_pred CceEEEeccccccccchh---HHHHhHHHhCCcEEEEe--cCCCCC
Q 007024 565 LIDGILLTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYT 605 (621)
Q Consensus 565 ~it~IIlTK~De~~~~vG---~~ls~~~~~g~PI~fvg--~Gq~v~ 605 (621)
..-.+++||+|.. ...+ .+-.+....|.|++.++ +|+++.
T Consensus 113 ~p~ivv~NK~Dl~-~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~ 157 (274)
T 3i8s_A 113 IPCIVALNMLDIA-EKQNIRIEIDALSARLGCPVIPLVSTRGRGIE 157 (274)
T ss_dssp CCEEEEEECHHHH-HHTTEEECHHHHHHHHTSCEEECCCGGGHHHH
T ss_pred CCEEEEEECccch-hhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 3458999999986 3322 24456677899999887 565544
No 219
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.87 E-value=2.8e-05 Score=74.35 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=78.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..|+|+|+.|||||||++.|.+-....... .-.+.+. ... .+.+ .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~-~~~------------~~~~--------------------~ 70 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSN-HTIGVEF-GSR------------VVNV--------------------G 70 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCE-EEE------------EEEE--------------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCC-Cccccee-EEE------------EEEE--------------------C
Confidence 4579999999999999999987422111000 0001010 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+ .+..... .+.+.+|+|-+.+... ....+...+..+.........-.++.||+
T Consensus 71 ~~~~~l~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~piilv~nK~ 140 (200)
T 2o52_A 71 GKTVKLQIWDTAGQERFR-SVTRSYY-----RGAAGALLVYDITSRE----TYNSLAAWLTDARTLASPNIVVILCGNKK 140 (200)
T ss_dssp TEEEEEEEECCTTHHHHS-CCCHHHH-----TTCSEEEEEEETTCHH----HHHTHHHHHHHHHHHTCTTCEEEEEEECG
T ss_pred CeeeEEEEEcCCCcHhHH-HHHHHHh-----ccCCEEEEEEECcCHH----HHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 012356788999965432 1222333 5678888877665421 11222222333322111224457899999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 141 Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 178 (200)
T 2o52_A 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178 (200)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 985322 2345666777888888777 67666554
No 220
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.87 E-value=5.2e-05 Score=71.01 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
..++|+|+.||||||+++.|.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998753
No 221
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.87 E-value=0.0001 Score=70.95 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=59.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~De 576 (621)
+.+.++||+|....+ .+..... .+.+.+|+|-+++. .. ....+...+..+..... ....-.+++||+|.
T Consensus 84 ~~l~l~Dt~G~~~~~-~~~~~~~-----~~~d~iilV~D~~~---~~-s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 84 VHLQLWDTAGQERFR-SLTTAFF-----RDAMGFLLMFDLTS---QQ-SFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp EEEEEEEEESHHHHH-HHHHHHH-----TTCCEEEEEEETTC---HH-HHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred EEEEEEECCCcHhHH-hHHHHHh-----cCCCEEEEEEECcC---HH-HHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 457889999976533 2333344 67788888776643 22 12223333443433221 23456789999998
Q ss_pred cccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 577 IDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 577 ~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
...+ .-.+..++...+.|+..++ +|+++.+|
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 189 (217)
T 2f7s_A 154 PDQREVNERQARELADKYGIPYFETSAATGQNVEKA 189 (217)
T ss_dssp GGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHH
T ss_pred ccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHH
Confidence 6321 2345666777899988887 67666554
No 222
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.87 E-value=8.6e-05 Score=72.69 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=89.9
Q ss_pred eEEEEEec-CCCCHHHHHHHHHHhHhhcCcEEEEccccccee------eeee---hhhhhh-------hh------cccc
Q 007024 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------GAVE---QLRTHA-------RR------LQVP 472 (621)
Q Consensus 416 ~iiaLVGp-NGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri------gave---Ql~~~~-------~~------L~v~ 472 (621)
++|+|+|. .|+||||+...||..+...+.+|+++.+|..+. |.-. .+..+. +. -++.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 37778765 589999999999999988888999999997421 1100 010000 00 1122
Q ss_pred eeecCCCCCH-------HHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 473 IFEKGYEKDP-------AIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 473 l~~~~~~~d~-------~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
+.. +. ... .....+.++.+. ..||++++|++++... ....+. ...|.+++|.+|.. ...
T Consensus 83 ~lp-~~-~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~---~~~~~~-----~~ad~vi~v~~~~~--~~~- 148 (237)
T 1g3q_A 83 VLP-GA-VDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQL---DAMSAM-----LSGEEALLVTNPEI--SCL- 148 (237)
T ss_dssp EEC-CC-CSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSSH---HHHHHH-----TTCSEEEEEECSCH--HHH-
T ss_pred EEe-CC-CccchhhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcCH---HHHHHH-----HHCCeEEEEecCCc--ccH-
Confidence 211 11 111 111223333332 4689999999887652 223333 45678888776632 112
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
..+...+..+... ...+.++|+++++..... ..+-.+....+.|+.
T Consensus 149 --~~~~~~~~~l~~~--~~~~~~vv~N~~~~~~~~-~~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 149 --TDTMKVGIVLKKA--GLAILGFVLNRYGRSDRD-IPPEAAEDVMEVPLL 194 (237)
T ss_dssp --HHHHHHHHHHHHT--TCEEEEEEEEEETSCTTC-CCHHHHHHHHCSCEE
T ss_pred --HHHHHHHHHHHhC--CCceEEEEEecCCcccch-hHHHHHHHHhCccce
Confidence 2223334444332 235678999999875222 233444556788864
No 223
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.86 E-value=1.1e-05 Score=73.99 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=74.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+++-..+... ..-.+.+. . ...+. ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~t~~~~~-~---------------~~~~~--~~--------------- 51 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKH-ITTLGASF-L---------------TKKLN--IG--------------- 51 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSC-CCCCSCEE-E---------------EEEEE--SS---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCC-CCccceEE-E---------------EEEEE--EC---------------
Confidence 357999999999999999998753211100 00000000 0 00000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|....+ .+.... ..+.+.+++|-+.+... .......+...+..... ....-.+++||+
T Consensus 52 ~~~~~l~i~Dt~G~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~~piilv~nK~ 121 (170)
T 1z08_A 52 GKRVNLAIWDTAGQERFH-ALGPIY-----YRDSNGAILVYDITDED-SFQKVKNWVKELRKMLG---NEICLCIVGNKI 121 (170)
T ss_dssp SCEEEEEEEECCCC--------CCS-----STTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHG---GGSEEEEEEECG
T ss_pred CEEEEEEEEECCCcHhhh-hhHHHH-----hccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhcC---CCCeEEEEEECc
Confidence 012356678999955422 111111 25678888876654321 11122222122222221 123457899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|.... ..-.+..++...+.|+..++ +|+++.+
T Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 122 DLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred ccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 98632 12356667777888887776 5655544
No 224
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.86 E-value=8.3e-06 Score=78.66 Aligned_cols=37 Identities=32% Similarity=0.223 Sum_probs=31.8
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+|+ +++|+|||||||||+++.|++.+ |.+.+.+.+.
T Consensus 27 ~~g~--~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 27 EPTR--HVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -CCC--EEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3566 99999999999999999999987 7788887665
No 225
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.86 E-value=2.6e-05 Score=73.74 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=80.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.|||||||++.|++--....... -.+.+. ... .+.+ .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~-~~~------------~~~~--------------------~ 66 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEF-GAR------------MVNI--------------------D 66 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSE-EEE------------EEEE--------------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-ccccee-EEE------------EEEE--------------------C
Confidence 45799999999999999999876311100000 001110 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+++... ....+...+..+.........-.+++||+
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~----s~~~~~~~l~~i~~~~~~~~piilv~nK~ 136 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRS-ITRSYY-----RGAAGALLVYDITRRE----TFNHLTSWLEDARQHSSSNMVIMLIGNKS 136 (191)
T ss_dssp TEEEEEEEECCTTGGGTSC-CCHHHH-----TTCSEEEEEEETTCHH----HHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CEEEEEEEEECCCchhhhh-hHHHHh-----ccCCEEEEEEECCCHH----HHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 0123567889999654322 222333 5678888877665421 11222233333322111223457899999
Q ss_pred ccccc---chhHHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 575 DTIDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 575 De~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
|.... ..-.+..++...+.|+..++ +|+++.++-
T Consensus 137 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 137 DLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175 (191)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred ccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 98632 13345667778899888877 677666543
No 226
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.85 E-value=3.7e-05 Score=72.21 Aligned_cols=149 Identities=16% Similarity=0.163 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..|+|+|..||||||+++.|++-...... ..+.. ......+.. .
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~------~~t~~-----------~~~~~~~~~------------------~ 65 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY------DPTIE-----------DSYRKQVVI------------------D 65 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCC------CTTCC-----------EEEEEEEEE------------------T
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCcccc------CCccc-----------eEEEEEEEE------------------C
Confidence 458999999999999999999863211000 00000 000000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|..... .+..... ...+.+++|-+.+... .......+...+..+... ....-.+++||+
T Consensus 66 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~p~ilv~nK~ 136 (190)
T 3con_A 66 GETCLLDILDTAGQEEYS-AMRDQYM-----RTGEGFLCVFAINNSK-SFADINLYREQIKRVKDS--DDVPMVLVGNKC 136 (190)
T ss_dssp TEEEEEEEEECCC------------C-----TTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHTC--SCCCEEEEEECT
T ss_pred CEEEEEEEEECCChHHHH-HHHHHhh-----CcCCEEEEEEECcCHH-HHHHHHHHHHHHHHHhCC--CCCeEEEEEECC
Confidence 112457789999965432 2222333 5677777765544321 111222222333333221 123457999999
Q ss_pred ccccc--chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDD--KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~--~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|.... ..-.+..++...+.|+..++ +|+++.++
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 173 (190)
T 3con_A 137 DLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173 (190)
T ss_dssp TCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred cCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 97521 23456667778899988776 66666543
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.85 E-value=4.8e-05 Score=80.96 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+++|+|++|||||||++.|++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999754
No 228
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.85 E-value=1.8e-05 Score=72.37 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=54.8
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...++||+|....+. +..... .+.+.+++|-+++.. .. ...+...+..+.........-.+++||+|...
T Consensus 53 ~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~---~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 53 KLQIWDTAGQERFRT-ITTAYY-----RGAMGIILVYDITDE---RT-FTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp EEEEECCTTGGGTSC-CCHHHH-----TTEEEEEEEEETTCH---HH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred EEEEEeCCCChhhhh-hHHHHh-----ccCCEEEEEEECCCH---HH-HHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 567889999654321 222333 567888887665432 11 11122222222221112234579999999742
Q ss_pred c--chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 579 D--KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 579 ~--~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
. ..-.+..++...+.|+..++ +|+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred CccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 1 22345566777899988876 66666554
No 229
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.85 E-value=1.1e-05 Score=87.78 Aligned_cols=118 Identities=27% Similarity=0.396 Sum_probs=58.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.|+|||.+|||||||++.|++- ++.+.. ++ .|.- .+. .+.. +...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~------~~~~v~-~~--~g~T------~d~----~~~~----------------~~~~ 49 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE------RISIVE-DT--PGVT------RDR----IYSS----------------AEWL 49 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE------ECC--------------------C----EEEE----------------CTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC------Cceeec-CC--CCCc------cce----EEEE----------------EEEC
Confidence 7999999999999999998742 111100 00 0000 000 0000 0112
Q ss_pred CCCccccccchhHHhHHHHHHHHHh--hhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSK--LIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~--l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
+....++||+|-......+...+.. .....++|++|+|.+++.++...+. .+.+.+ ... ...-.++++|+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l---~~~---~~pvilv~NK~ 121 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKIL---YRT---KKPVVLAVNKL 121 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHH---TTC---CSCEEEEEECC
T ss_pred CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHH---HHc---CCCEEEEEECc
Confidence 4467889999975211111111111 0112567999998899999887653 232322 222 23458999999
Q ss_pred ccc
Q 007024 575 DTI 577 (621)
Q Consensus 575 De~ 577 (621)
|..
T Consensus 122 D~~ 124 (436)
T 2hjg_A 122 DNT 124 (436)
T ss_dssp CC-
T ss_pred cCc
Confidence 986
No 230
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.84 E-value=1.8e-05 Score=76.87 Aligned_cols=166 Identities=14% Similarity=0.205 Sum_probs=83.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceee---c-CCCCCHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFE---K-GYEKDPAIVAKEAI 490 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~---~-~~~~d~~~ia~~al 490 (621)
++.++|+|..||||||++..++..+... .++.+.+.|... + +... .....+..... . .+....... .+.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~-~-~d~~--~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 111 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA-K-FDAE--RMEKHGAKVVPLNTGKECHLDAHLV-GHAL 111 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT-H-HHHH--HHHTTTCEEEEEECTTCSSCCHHHH-HHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC-C-ccHH--HHHhcCCcEEEecCCceEeccHHHH-HHHH
Confidence 4589999999999999999999876544 566666666531 0 0000 00000111111 0 011112222 2333
Q ss_pred HHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
..+...+++.+++|++|....... + . ...+.++.|.++..+.+.... +... + .....++
T Consensus 112 ~~l~~~~~d~~~id~~g~i~~~~s----~----~-~~~~~~~~v~~~~~~~~~~~~---~~~~---~------~~~~iiv 170 (226)
T 2hf9_A 112 EDLNLDEIDLLFIENVGNLICPAD----F----D-LGTHKRIVVISTTEGDDTIEK---HPGI---M------KTADLIV 170 (226)
T ss_dssp TTSCGGGCSEEEEECCSCSSGGGG----C----C-CSCSEEEEEEEGGGCTTTTTT---CHHH---H------TTCSEEE
T ss_pred HHHhcCCCCEEEEeCCCCccCcch----h----h-hccCcEEEEEecCcchhhHhh---hhhH---h------hcCCEEE
Confidence 322334568999999985322110 1 1 223444444443333221110 0011 1 1346899
Q ss_pred ecccccccc---chhHHHHhHHHh--CCcEEEEe--cCCCCCcc
Q 007024 571 LTKFDTIDD---KVGAALSMVYVS--GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 571 lTK~De~~~---~vG~~ls~~~~~--g~PI~fvg--~Gq~v~DL 607 (621)
+||+|.... ..-.+...+... +.|+.+++ +|+++.+|
T Consensus 171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 214 (226)
T 2hf9_A 171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKV 214 (226)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHH
T ss_pred EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHH
Confidence 999998632 233344444443 56777765 67776654
No 231
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.84 E-value=2.3e-05 Score=73.18 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=57.5
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~De 576 (621)
+.+.++||+|....+. +..... .+.+.+++|-+++.... ...+...+..+..... ....-.+++||+|.
T Consensus 70 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~s----~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRS-LTTAFF-----RDAMGFLLLFDLTNEQS----FLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEECCSGGGHH-HHHHTT-----TTCSEEEEEEETTCHHH----HHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred EEEEEEeCCCcHHHHH-HHHHHH-----cCCCEEEEEEECCCHHH----HHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4577899999765432 333333 57788888776654221 1122222333322111 22345899999998
Q ss_pred ccc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 577 IDD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 577 ~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
... ..-.+..++...+.|+..++ +|+++.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 175 (195)
T 3bc1_A 140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175 (195)
T ss_dssp GGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred ccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 632 12445667777899988776 66666543
No 232
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.83 E-value=6.2e-05 Score=81.66 Aligned_cols=149 Identities=20% Similarity=0.243 Sum_probs=81.3
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+..++|||.+|||||||++.|++-....-..+.-.+.|. ....+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~---------------~~~~~-------------------- 218 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA---------------VDTSF-------------------- 218 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------------------------CCEEE--------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeee---------------eEEEE--------------------
Confidence 3568999999999999999999863211000000000010 00001
Q ss_pred hhcCCCccccccchhHH--------hHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 494 TRNGSDVVLVDTAGRMQ--------DNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~q--------qr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
...+..+.++||+|-.. .+...++.+. .....|.+++|.+++.+....+. +.+..+.... .
T Consensus 219 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~~ad~~llv~D~~~~~s~~~~-----~~~~~~~~~~---~ 287 (436)
T 2hjg_A 219 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AIDRSEVVAVVLDGEEGIIEQDK-----RIAGYAHEAG---K 287 (436)
T ss_dssp EETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH---HHHHCSEEEEEEETTTCCCHHHH-----HHHHHHHHTT---C
T ss_pred EECCeEEEEEECCCcCcCccccchHHHHHHHHHHH---HHHhCCEEEEEEcCCcCCcHHHH-----HHHHHHHHcC---C
Confidence 01123467899999621 1222233322 12456888888888888776553 2222222222 3
Q ss_pred ceEEEeccccccccchh---HHHH-----hHHHhCCcEEEEe--cCCCCCccc
Q 007024 566 IDGILLTKFDTIDDKVG---AALS-----MVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 566 it~IIlTK~De~~~~vG---~~ls-----~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
.-.++++|+|......- .+.. +....+.|+++++ +|+++.+|-
T Consensus 288 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~ 340 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 340 (436)
T ss_dssp EEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred cEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHH
Confidence 45899999998732221 1111 1222478999988 899887753
No 233
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.83 E-value=6.6e-06 Score=84.05 Aligned_cols=51 Identities=18% Similarity=0.116 Sum_probs=42.1
Q ss_pred CCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 397 RRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 397 ~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.....+++++++.++.| ++|+||||+||||+++.||+.+.+ +.|.+.+.++
T Consensus 30 ~~~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l 80 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL 80 (274)
T ss_dssp HHSHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred hhCHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence 34456888888887665 999999999999999999998765 5788887765
No 234
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.83 E-value=4.6e-05 Score=71.40 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=83.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcC-cE-EEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VS-VMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~-Gk-V~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~ 492 (621)
...++|+|+.|||||||++.|.+...... +. +.+.. .. ....+..+.......
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~-~~------------~~t~~~~~~~~~~~~------------ 68 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLAT-ED------------ERTLFFDFLPLDIGE------------ 68 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEEC-SS------------CEEEEEEECCSSCCC------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcccccccccccccc-cc------------ccceeeeeccccccc------------
Confidence 35799999999999999998877543321 11 11100 00 000011111000000
Q ss_pred HhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHH---HHHHHhhcCCCCCCceEE
Q 007024 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFN---QKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 493 ~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~---~~L~~l~~~~~~~~it~I 569 (621)
.....+...+.||+|....+. +..... .+.+.+|+|-+++.+.-..+ ...|. ..+..+.. ......-.+
T Consensus 69 ~~~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~D~~~~~~~~~-~~s~~~l~~~l~~~~~-~~~~~piil 140 (198)
T 3t1o_A 69 VKGFKTRFHLYTVPGQVFYNA-SRKLIL-----RGVDGIVFVADSAPNRLRAN-AESMRNMRENLAEYGL-TLDDVPIVI 140 (198)
T ss_dssp SSSCEEEEEEEECCSCCSCSH-HHHHHT-----TTCCEEEEEEECCGGGHHHH-HHHHHHHHHHHHHTTC-CTTSSCEEE
T ss_pred ccCCceEEEEEeCCChHHHHH-HHHHHH-----hcCCEEEEEEECCcchhhHh-HHHHHHHHHHHHhhcc-ccCCCCEEE
Confidence 001123567889999654332 233333 67788888877763221111 22332 23333311 112345678
Q ss_pred Eecccccccc-chhHHHHhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 570 LLTKFDTIDD-KVGAALSMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 570 IlTK~De~~~-~vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
+.||+|.... ..-.+..++...+. |+..++ +|+++.++
T Consensus 141 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 141 QVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp EEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred EEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 9999997622 23445666777788 877776 67766554
No 235
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.83 E-value=1.4e-05 Score=75.94 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=20.1
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHH
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
+++++++..+.. .++|+|++||||||+++.+++
T Consensus 13 ~l~~~~~~~~~~---ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG---KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C---EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc---EEEEECCCCCCHHHHHHHHhc
Confidence 455666654443 699999999999999999886
No 236
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.83 E-value=2.5e-05 Score=74.73 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +..... .+.+.+++|-+++... . ...+...+..+.........-.+++||+|..
T Consensus 69 ~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~---s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 69 VKLQLWDTAGQERFRT-ITTAYY-----RGAMGIILVYDVTDER---T-FTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEECCTTGGGGTC-CCHHHH-----TTCSEEEEEEETTCHH---H-HHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEEeCCCcHHHHH-HHHHHh-----ccCCEEEEEEECCCHH---H-HHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4567899999664322 223333 5778888877665321 1 1112222222222111223457999999984
Q ss_pred ccc--hhHHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 578 DDK--VGAALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 578 ~~~--vG~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
... .-.+..++...+.|++.++ +|+++.++.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 221 2345566777889988877 677776543
No 237
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.82 E-value=2.9e-05 Score=72.45 Aligned_cols=149 Identities=14% Similarity=0.108 Sum_probs=79.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+.+-..+....- -.+.+. ... .+.+ .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~-~~~------------~~~~--------------------~ 55 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH-TIGVEF-GSK------------IINV--------------------G 55 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC-CSEEEE-EEE------------EEEE--------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-ccceEE-EEE------------EEEE--------------------C
Confidence 35799999999999999999875321110000 000000 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+++... . ...+...+..+.........-.++.||+
T Consensus 56 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~---s-~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (186)
T 2bme_A 56 GKYVKLQIWDTAGQERFRS-VTRSYY-----RGAAGALLVYDITSRE---T-YNALTNWLTDARMLASQNIVIILCGNKK 125 (186)
T ss_dssp TEEEEEEEEEECCSGGGHH-HHHTTS-----TTCSEEEEEEETTCHH---H-HHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred CEEEEEEEEeCCCcHHHHH-HHHHHH-----hcCCEEEEEEECcCHH---H-HHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 0113567889999665332 222222 5678888877665421 1 1122222222222111224568999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 985321 2345566777888887776 67666554
No 238
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.82 E-value=0.00015 Score=73.85 Aligned_cols=147 Identities=15% Similarity=0.150 Sum_probs=83.6
Q ss_pred ceEEEEEec-CCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehh-----hhhhhh----------------cccc
Q 007024 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHARR----------------LQVP 472 (621)
Q Consensus 415 p~iiaLVGp-NGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl-----~~~~~~----------------L~v~ 472 (621)
+++++|.|+ .|+||||+...||..+...+.+|+++++|..+......+ ..+.+. -++.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 161 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLD 161 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTEE
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCEE
Confidence 459999987 689999999999999988888999999997542111000 001000 1222
Q ss_pred eeecCC-CCCHHH-----HHHHHHHHHhhcCCCccccccchhHHh-HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHH
Q 007024 473 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQD-NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 545 (621)
Q Consensus 473 l~~~~~-~~d~~~-----ia~~al~~~~~~~~d~vliDtSGg~qq-r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~ 545 (621)
+...+. ..++.+ ...+.++.+. ..||++++||++.... ...+ +. ...|.+|+|.+|.. ....
T Consensus 162 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~---l~-----~~aD~vilVv~~~~--~~~~ 230 (271)
T 3bfv_A 162 VLTSGPIPPNPSELITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQL---FS-----KFTGNVVYVVNSEN--NNKD 230 (271)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHH---HH-----HHHCEEEEEEETTS--CCHH
T ss_pred EEECCCCCCCHHHHhChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHH---HH-----HHCCEEEEEEeCCC--CcHH
Confidence 222221 223332 2234444443 4689999999886542 2222 22 12367777766633 2222
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
.. .+++..+... ...+-++|++++|.-
T Consensus 231 ~~---~~~~~~l~~~--~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 231 EV---KKGKELIEAT--GAKLLGVVLNRMPKD 257 (271)
T ss_dssp HH---HHHHHHHHTT--TCEEEEEEEEEECC-
T ss_pred HH---HHHHHHHHhC--CCCEEEEEEeCCcCC
Confidence 22 2334444332 235678999999875
No 239
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.82 E-value=2.1e-05 Score=74.14 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
...++|+|+.||||||+++.|++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=3.5e-06 Score=87.89 Aligned_cols=42 Identities=31% Similarity=0.286 Sum_probs=24.2
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE---ccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM---AACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I---~~~Dt 453 (621)
+.+|+ +++|+||||||||||++.|+|.+.+..|.|.+ .|.++
T Consensus 170 ~~~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 170 HFQDK--TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGTTS--EEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred hcCCC--EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 44788 99999999999999999999999999999988 55555
No 241
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.81 E-value=6.6e-05 Score=77.06 Aligned_cols=167 Identities=16% Similarity=0.152 Sum_probs=91.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce-----ee------eeehhhh---------hhh-----hc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----SG------AVEQLRT---------HAR-----RL 469 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R-----ig------aveQl~~---------~~~-----~L 469 (621)
+++|+|+|.-|+||||+...||..+...+.+|+++.+|... .+ ..+-+.. +.+ .-
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~~~~ 120 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGFN 120 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECGG
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhccCCC
Confidence 45999999999999999999999998888899999999732 00 0000000 000 00
Q ss_pred ccceeecC-----CCC-CH-HHHHHHHHHHH-hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 470 QVPIFEKG-----YEK-DP-AIVAKEAIQEA-TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 470 ~v~l~~~~-----~~~-d~-~~ia~~al~~~-~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
++.+...+ ... .. .......++.. ....||++++||+++..... ...+. ...|.+|+|.+|..
T Consensus 121 ~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~--~~~~l-----~~aD~viiv~~~~~-- 191 (307)
T 3end_A 121 GVMCVEAGGPPAGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGG--FAAPL-----QHADQAVVVTANDF-- 191 (307)
T ss_dssp GCEEEECCCCCSSSSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGG--GGGGG-----GTCSEEEEEECSSH--
T ss_pred CceEEECCCcccccccchhhhHHHHHHHHhhhccccCCEEEEeCCCccchHH--HHHHH-----HHCCEEEEEecCcH--
Confidence 22222111 111 11 11112233321 23468999999987654211 01112 45688888776632
Q ss_pred CHHHHHHHHHHHHHHhhcC--CCCCCceEEEeccccccccchhHHHHhHHHhCCcEEE
Q 007024 542 DAVDQLSKFNQKLADLSSS--PNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVMF 597 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~--~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~f 597 (621)
.... ...+.+..+... .....+.++|+++++.- ..+-.+....|.|+..
T Consensus 192 ~s~~---~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 192 DSIY---AMNRIIAAVQAKSKNYKVRLAGCVANRSRAT----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHH---HHHHHHHHHHTTTTTCCCEEEEEEEESCSCC----HHHHHHHHHHTCCEEE
T ss_pred HHHH---HHHHHHHHHHHhhhcCCCceEEEEEecCCcH----HHHHHHHHHcCCCcee
Confidence 1122 223334333332 12345567999999863 2344456677888764
No 242
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.81 E-value=6.4e-06 Score=76.20 Aligned_cols=99 Identities=12% Similarity=0.113 Sum_probs=56.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +.... ..+.+.+++|-+++.. . ....+...+..+.... ....-.+++||+|..
T Consensus 58 ~~~~i~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~---~-s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~ 126 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRT-ITSTY-----YRGTHGVIVVYDVTSA---E-SFVNVKRWLHEINQNC-DDVCRILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEETTGGGCSS-CCGGG-----GTTCSEEEEEEETTCH---H-HHHHHHHHHHHHHHHC-TTSEEEEEEECTTCG
T ss_pred EEEEEEcCCCchhhhh-hHHHH-----hccCCEEEEEEECCCH---H-HHHHHHHHHHHHHHhC-CCCCEEEEEECCCCc
Confidence 3567889999654321 11111 2567888887766542 1 1222223333333221 123457899999976
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
..+ .-.+..++...+.|+..++ +|+++.+|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 127 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 322 2456677778899988877 66666554
No 243
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.81 E-value=7.2e-05 Score=81.63 Aligned_cols=149 Identities=20% Similarity=0.222 Sum_probs=82.3
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+..++|+|.+|||||||++.|++.-........-.+.|. ....+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~---------------~~~~~-------------------- 238 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA---------------VDTSF-------------------- 238 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT---------------TSEEE--------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE---------------EEEEE--------------------
Confidence 3458999999999999999998753110000000000010 00001
Q ss_pred hhcCCCccccccchhH--------HhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 494 TRNGSDVVLVDTAGRM--------QDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~--------qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
...+..+.++||+|-. +.+...++.+. .....+++|+|.+++.+....+. . .+..+.... .
T Consensus 239 ~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~~ad~~llviD~~~~~~~~~~--~---~~~~~~~~~---~ 307 (456)
T 4dcu_A 239 TYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AIDRSEVVAVVLDGEEGIIEQDK--R---IAGYAHEAG---K 307 (456)
T ss_dssp EETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH---HHHHCSEEEEEEETTTCCCHHHH--H---HHHHHHHTT---C
T ss_pred EECCceEEEEECCCCCcCcccchHHHHHHHHHHHH---HHhhCCEEEEEEeCCCCcCHHHH--H---HHHHHHHcC---C
Confidence 0122356799999921 12222333332 12456888888888888765543 2 222222222 3
Q ss_pred ceEEEeccccccccc---hhHHHHhHHHh-----CCcEEEEe--cCCCCCccc
Q 007024 566 IDGILLTKFDTIDDK---VGAALSMVYVS-----GAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 566 it~IIlTK~De~~~~---vG~~ls~~~~~-----g~PI~fvg--~Gq~v~DL~ 608 (621)
.-+++++|+|..... .-.+...+... +.|+++++ +|+++.+|-
T Consensus 308 ~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 308 AVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp EEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred CEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence 457899999987322 12333333333 68999988 899887653
No 244
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.81 E-value=1e-05 Score=82.01 Aligned_cols=142 Identities=22% Similarity=0.200 Sum_probs=77.2
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
+.++|+|++|||||||++.|+|..... |. ..+. + +...... ...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~-~~--~~~~-t-----------------~~~~~~~---------------~~~ 47 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHV-GN--WPGV-T-----------------VEKKEGI---------------MEY 47 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEE-EE--CTTS-S-----------------CEEEEEE---------------EEE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccc-CC--CCCe-E-----------------EEeeEEE---------------EEE
Confidence 479999999999999999998753211 10 0000 0 0000000 001
Q ss_pred cCCCccccccchhHHh-----HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 496 NGSDVVLVDTAGRMQD-----NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 496 ~~~d~vliDtSGg~qq-----r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
.+....++||+|-... ...+++.. +...++|.+++|.+++.+ .... ..+..+.... .....++
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---~~~~~~d~vi~v~D~~~~---~~~~----~~~~~~~~~~--~~p~ilv 115 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNF---ILDGNADVIVDIVDSTCL---MRNL----FLTLELFEME--VKNIILV 115 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHH---HHTTCCSEEEEEEEGGGH---HHHH----HHHHHHHHTT--CCSEEEE
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHh---hhccCCcEEEEEecCCcc---hhhH----HHHHHHHhcC--CCCEEEE
Confidence 1234567888884321 11122222 223678999998887763 1111 2222232222 1345789
Q ss_pred eccccccccchh---HHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 571 LTKFDTIDDKVG---AALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 571 lTK~De~~~~vG---~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+||+|.. .+-+ ..-.+....|.|++.++ +|+++.+
T Consensus 116 ~NK~Dl~-~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~ 155 (271)
T 3k53_A 116 LNKFDLL-KKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE 155 (271)
T ss_dssp EECHHHH-HHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred EEChhcC-cccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence 9999965 2221 24556778899988876 6666543
No 245
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.81 E-value=4.3e-05 Score=72.79 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=76.1
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+..|+|+|+.|||||||++.|++-....... .-.+.+. .... +.+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~-~~~~------------~~~-------------------- 72 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS-ATLGVDF-QMKT------------LIV-------------------- 72 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-----------C-EEEE------------EEE--------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCC-CCcccee-EEEE------------EEE--------------------
Confidence 35689999999999999999987532110000 0000010 0000 000
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
....+.+.++||+|....+. +..... .+.+.+|+|-+++.... ......+.+.+..... ....-.+++||
T Consensus 73 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~-----~~~d~iilv~d~~~~~s-~~~~~~~~~~i~~~~~---~~~piilv~NK 142 (199)
T 2p5s_A 73 DGERTVLQLWDTAGQERFRS-IAKSYF-----RKADGVLLLYDVTCEKS-FLNIREWVDMIEDAAH---ETVPIMLVGNK 142 (199)
T ss_dssp TTEEEEEEEEECTTCTTCHH-HHHHHH-----HHCSEEEEEEETTCHHH-HHTHHHHHHHHHHHC------CCEEEEEEC
T ss_pred CCEEEEEEEEECCCCcchhh-hHHHHH-----hhCCEEEEEEECCChHH-HHHHHHHHHHHHHhcC---CCCCEEEEEEC
Confidence 00123467889999765433 223333 35678888766654321 1111122222332221 12345789999
Q ss_pred cccccc-------c--hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 574 FDTIDD-------K--VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 574 ~De~~~-------~--vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+|.... . .-.+..++...+.|+..++ +|+++.+
T Consensus 143 ~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp GGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred cccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 998521 1 2234566677788887776 5666554
No 246
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.80 E-value=7.9e-05 Score=75.29 Aligned_cols=150 Identities=16% Similarity=0.200 Sum_probs=76.0
Q ss_pred ccchHHHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc
Q 007024 375 FTRISSIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (621)
Q Consensus 375 ~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~ 454 (621)
|......++..+.+.+.++... ...+..++++|.+|||||||++.|++--...... ..++ ++
T Consensus 14 ~~~l~~~~~~~l~~~~~~~~~~---------------~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~--~~~~-t~ 75 (270)
T 1h65_A 14 INTFAPATQTKLLELLGNLKQE---------------DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISP--FQSE-GP 75 (270)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHT---------------TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS--SSCC-CS
T ss_pred hhhccHHHHHHHHHHHHHHhhc---------------CCCCeEEEEECCCCCCHHHHHHHHhCCCcccccC--CCCc-ce
Confidence 4444555666665555554321 1124589999999999999999998622100000 0000 00
Q ss_pred eeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhcCCCccccccchhHHhH---HHHHHHHHhhhhcCCCcEE
Q 007024 455 RSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDN---EPLMRALSKLIYLNNPDLV 531 (621)
Q Consensus 455 RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~~~d~vliDtSGg~qqr---~~LaraL~~l~~~~~PdlI 531 (621)
+ ...+.+ ...+..+.++||+|-.... ....+.+...+....++.+
T Consensus 76 ~------------~~~~~~--------------------~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (270)
T 1h65_A 76 R------------PVMVSR--------------------SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVL 123 (270)
T ss_dssp S------------CEEEEE--------------------EETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred e------------eEEEEE--------------------eeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEE
Confidence 0 000000 0123457889999964321 2233333333333568889
Q ss_pred EEEeCCcC-CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 532 LFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 532 LLVDEpt~-GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
|+|.++.. .++..+. .+.+.+...... .......+++||+|..
T Consensus 124 l~v~~~d~~~~~~~~~--~~~~~l~~~~~~-~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 124 LYVDRLDAYRVDNLDK--LVAKAITDSFGK-GIWNKAIVALTHAQFS 167 (270)
T ss_dssp EEEEESSCCCCCHHHH--HHHHHHHHHHCG-GGGGGEEEEEECCSCC
T ss_pred EEEEeCCCCcCCHHHH--HHHHHHHHHhCc-ccccCEEEEEECcccC
Confidence 88855543 4554432 222333332111 0012468999999986
No 247
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.80 E-value=5.9e-06 Score=79.70 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=37.5
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEE--EEccccc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV--MMAACDT 453 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV--~I~~~Dt 453 (621)
..+.+++...+|+ +++|+||+||||||+++.|++.+. ..|.+ .+.+.+.
T Consensus 14 ~~~~~~~~~~~g~--~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 14 KVDRQRLLDQKGC--VIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHHHTSCCE--EEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred HHHHHHhcCCCCe--EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 3344445445677 999999999999999999999988 56666 6666544
No 248
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.79 E-value=7.8e-07 Score=88.90 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=29.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+++|+|||||||||++.+|+|++.|+.|.|.+.+.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 8999999999999999999999999999998877654
No 249
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=5.1e-05 Score=71.54 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=77.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|.+-.......-.+ + ++++ ..+.. .
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~-~-~~~~---------------~~~~~------------------~ 52 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI-E-DTYR---------------QVISC------------------D 52 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCC-C-EEEE---------------EEEEE------------------T
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcc-c-ccee---------------EEEEE------------------C
Confidence 4589999999999999999998621110000000 0 0000 00000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+ .+.+... .+.+.+++|-+.+.. +.......+...+..+.... ....-.+++||+
T Consensus 53 ~~~~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~-~~~piilv~nK~ 124 (199)
T 2gf0_A 53 KSVCTLQITDTTGSHQFP-AMQRLSI-----SKGHAFILVFSVTSK-QSLEELGPIYKLIVQIKGSV-EDIPVMLVGNKC 124 (199)
T ss_dssp TEEEEEEEEECCGGGSCH-HHHHHHH-----HHCSEEEEEEETTCH-HHHHTTHHHHHHHHHHHSCG-GGSCEEEEEECT
T ss_pred CEEEEEEEEeCCChHHhH-HHHHHhh-----ccCCEEEEEEECcCH-HHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECc
Confidence 112356789999976543 2333333 346777776555431 11111122223333333211 112458999999
Q ss_pred cccccc--hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDDK--VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~~--vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|..... .-.+..++...+.|+..++ +|+++.+
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (199)
T 2gf0_A 125 DETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160 (199)
T ss_dssp TCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred cCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence 986322 2345566777788877766 6666544
No 250
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.79 E-value=9.4e-05 Score=70.87 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.+.||+|....+. +..... .+.+.+|+|-+.+.. .. ...+...+..+.........-.++.||+|..
T Consensus 78 ~~l~i~Dt~G~~~~~~-~~~~~~-----~~~d~iilv~D~~~~---~s-~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 147 (201)
T 2hup_A 78 VKLQIWDTAGQERFRT-ITQSYY-----RSANGAILAYDITKR---SS-FLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS 147 (201)
T ss_dssp EEEEEECCTTCGGGHH-HHHHHH-----TTCSEEEEEEETTBH---HH-HHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCcHhHHH-HHHHHH-----hhCCEEEEEEECCCH---HH-HHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence 4567899999765432 334444 677888887766532 11 1222223333322111223457899999986
Q ss_pred cc---chhHHHHhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 578 DD---KVGAALSMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~---~vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
.. ..-.+..++...+. |+..++ +|+++.++
T Consensus 148 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 148 ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 32 12346667778888 777766 66666543
No 251
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.79 E-value=7.3e-05 Score=69.61 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=52.3
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc-
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID- 578 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~- 578 (621)
+.+.||+|....+. +..... .+.+.+++|-+.+... .......+...+...... ....-.++.||+|...
T Consensus 68 l~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 68 LDVLDTAGQEEFSA-MREQYM-----RTGDGFLIVYSVTDKA-SFEHVDRFHQLILRVKDR--ESFPMILVANKVDLMHL 138 (183)
T ss_dssp EEEEECCSCGGGCS-SHHHHH-----HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTS--SCCCEEEEEECTTCSTT
T ss_pred EEEEECCCchhhHH-HHHHHH-----hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCCcEEEEEECCCchhc
Confidence 45689998654332 222222 3467887776654321 111111121222222111 1233579999999752
Q ss_pred --cchhHHHHhHHHhCCcEEEEe---cCCCCCcc
Q 007024 579 --DKVGAALSMVYVSGAPVMFVG---CGQSYTDL 607 (621)
Q Consensus 579 --~~vG~~ls~~~~~g~PI~fvg---~Gq~v~DL 607 (621)
-..-.+..++...+.|+..++ +|+++.++
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 139 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred cCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 123456777888899988876 45555543
No 252
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.79 E-value=8.1e-06 Score=77.01 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=78.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.|++--...... .-.+.+ +... .+.. .
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~-~t~~~~-~~~~--------------~~~~------------------~ 67 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFV-STVGID-FKVK--------------TVYR------------------H 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCC-CCCCCE-EEEE--------------EEEE------------------T
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcC-CceeEE-EEEE--------------EEEE------------------C
Confidence 4589999999999999999987532110000 000000 0000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+++|-+++... . ...+...+..+.........-.+++||+
T Consensus 68 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~---s-~~~~~~~~~~i~~~~~~~~piilv~nK~ 137 (189)
T 2gf9_A 68 DKRIKLQIWDTAGQERYRT-ITTAYY-----RGAMGFLLMYDIANQE---S-FAAVQDWATQIKTYSWDNAQVILVGNKC 137 (189)
T ss_dssp TEEEEEEEEECCSCCSSCC-SGGGGG-----TTCSEEEEEEETTCHH---H-HHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred CeEEEEEEEeCCCcHHHhh-hHHHhc-----cCCCEEEEEEECCCHH---H-HHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 1123567889988543221 111122 5678888876664421 1 1122222333322111224458999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.+|
T Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 175 (189)
T 2gf9_A 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175 (189)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 986322 2345667777888887776 56555544
No 253
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.79 E-value=0.00022 Score=72.49 Aligned_cols=172 Identities=17% Similarity=0.180 Sum_probs=90.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeee-----eehhhhhhh--------------------hcc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA-----VEQLRTHAR--------------------RLQ 470 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Riga-----veQl~~~~~--------------------~L~ 470 (621)
++|+|.|.-|+||||+...||..+...+.+|+++.+|...... .....++.+ .-+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~~ 82 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGYGG 82 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECGGG
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCCCC
Confidence 3788889999999999999999998888899999999742100 000000000 001
Q ss_pred cceeecCCCC----CH-HHH--HHHHHHHHh--hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC
Q 007024 471 VPIFEKGYEK----DP-AIV--AKEAIQEAT--RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN 541 (621)
Q Consensus 471 v~l~~~~~~~----d~-~~i--a~~al~~~~--~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl 541 (621)
+.+...+... .. ... ....++.+. ...||+++|||+|....+...+.... ...|.+++|.+|..
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~-----~~aD~viiv~~~~~-- 155 (289)
T 2afh_E 83 VKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRE-----NKAQEIYIVCSGEM-- 155 (289)
T ss_dssp CEEEECCCCCTTTCCHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHT-----TCCCEEEEEECSSH--
T ss_pred eEEEeCCCccccccccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhh-----hhCCEEEEEecCCH--
Confidence 2121111100 00 111 112222221 23689999999886432211111111 45688888776632
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccccchhHHHHhHHHhCCcEE
Q 007024 542 DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTIDDKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 542 D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~~~vG~~ls~~~~~g~PI~ 596 (621)
........+.+.+..+.... ...+.++|+++++.. .....+-.+....|.|+.
T Consensus 156 ~s~~~~~~~~~~l~~~~~~~-~~~~~gvv~N~~~~~-~~~~~~~~l~~~~g~~~l 208 (289)
T 2afh_E 156 MAMYAANNISKGIVKYANSG-SVRLGGLICNSRNTD-REDELIIALANKLGTQMI 208 (289)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-CCEEEEEEEECCCCT-THHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCceEEEEEecCCch-hHHHHHHHHHHHcCcccc
Confidence 12222223334444443321 234568999998753 222334445566788865
No 254
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.78 E-value=3.4e-05 Score=70.29 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=73.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|+.||||||+++.+.+-..+... ..+ ++. .....+.. ..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~~ 48 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKY------DPT--IED---------SYRKQVEV------------------DC 48 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCSC------CCC--SEE---------EEEEEEES------------------SS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC------CCC--ccc---------eEEEEEEE------------------CC
Confidence 47999999999999999999852111100 000 000 00000000 00
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
..+...++||+|...... +..... .+.+.+++|-+.+... .......+.+.+...... ....-.+++||+|
T Consensus 49 ~~~~~~l~D~~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~nK~D 119 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTA-MRDLYM-----KNGQGFALVYSITAQS-TFNDLQDLREQILRVKDT--EDVPMILVGNKCD 119 (167)
T ss_dssp CEEEEEEEEECSSCSSTT-HHHHHH-----HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCC--SCCCEEEEEECTT
T ss_pred EEEEEEEEECCChHHHHH-HHHHHh-----ccCCEEEEEEECCCHH-HHHHHHHHHHHHHHhhCc--CCCcEEEEEECcc
Confidence 123467889999654322 222222 3457777765544321 111111121222222211 1234578999999
Q ss_pred ccccc---hhHHHHhHHHh-CCcEEEEe--cCCCCCcc
Q 007024 576 TIDDK---VGAALSMVYVS-GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 576 e~~~~---vG~~ls~~~~~-g~PI~fvg--~Gq~v~DL 607 (621)
....+ .-.+..++... +.|+..++ +|+++.+|
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHH
T ss_pred ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHH
Confidence 86322 23455556565 77877766 66665543
No 255
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.77 E-value=5.8e-05 Score=72.75 Aligned_cols=123 Identities=17% Similarity=0.120 Sum_probs=64.6
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
....++|+|+.||||||+++.|++..... .+ ..+.... .. .+
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~----~~---~~~~~~~-----------~~-----~~--------------- 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TV---VSQEPLS-----------AA-----DY--------------- 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCC----BC---CCSSCEE-----------ET-----TG---------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC----ee---eecCceE-----------EE-----Ee---------------
Confidence 34589999999999999999998643111 00 0000000 00 00
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC-CCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-NDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G-lD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
....+.++||+|....+..+...+.... ..++.+++|-+++.. .........+.+.+............-.++.|
T Consensus 53 --~~~~~~l~Dt~G~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 53 --DGSGVTLVDFPGHVKLRYKLSDYLKTRA--KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp --GGSSCEEEECCCCGGGTHHHHHHHHHHG--GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred --eCceEEEEECCCcHHHHHHHHHHHHhcc--ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 2456789999998765543333333111 235677776666621 11122223344444332110111234578999
Q ss_pred cccccc
Q 007024 573 KFDTID 578 (621)
Q Consensus 573 K~De~~ 578 (621)
|+|...
T Consensus 129 K~Dl~~ 134 (218)
T 1nrj_B 129 KSELFT 134 (218)
T ss_dssp CTTSTT
T ss_pred chHhcc
Confidence 999863
No 256
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.77 E-value=6.9e-05 Score=77.43 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred ceEEEEEec-CCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehh-----hhhhhh----------------cccc
Q 007024 415 PYVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQL-----RTHARR----------------LQVP 472 (621)
Q Consensus 415 p~iiaLVGp-NGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl-----~~~~~~----------------L~v~ 472 (621)
+++|+|.|+ .|+||||+...||..+...+.+|+++++|..+......+ ..+.+. -++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~ 183 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 183 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTEE
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCEE
Confidence 459999998 589999999999999888888999999998432111000 001110 1222
Q ss_pred eeecCC-CCCHHH-----HHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC-CCCHHH
Q 007024 473 IFEKGY-EKDPAI-----VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVD 545 (621)
Q Consensus 473 l~~~~~-~~d~~~-----ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~-GlD~~~ 545 (621)
+...+. ..++.+ ...+.++.+. ..||++++||++...-. -+..+. ...|.+|+|..+.. ..+...
T Consensus 184 vl~~g~~~~~~~ell~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~--d~~~l~-----~~ad~vilV~~~~~~~~~~~~ 255 (299)
T 3cio_A 184 VITRGQVPPNPSELLMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVS--DAAVVG-----RSVGTSLLVARFGLNTAKEVS 255 (299)
T ss_dssp EECCCSCCSCHHHHHTSHHHHHHHHHHH-HHCSEEEEECCCTTTCT--HHHHHG-----GGCSEEEEEEETTTSCTTHHH
T ss_pred EEECCCCCCCHHHHhCHHHHHHHHHHHH-hCCCEEEEcCCCCchhH--HHHHHH-----HHCCEEEEEEcCCCChHHHHH
Confidence 222211 223322 2334444433 46899999998876421 122233 34577777766532 333322
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 546 QLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 546 q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+..+... ...+.++|++++|..
T Consensus 256 ------~~~~~l~~~--~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 256 ------LSMQRLEQA--GVNIKGAILNGVIKR 279 (299)
T ss_dssp ------HHHHHHHHT--TCCCCCEEEEECCCC
T ss_pred ------HHHHHHHhC--CCCeEEEEEeCCccC
Confidence 333333332 234568999999875
No 257
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.77 E-value=5.7e-05 Score=82.95 Aligned_cols=143 Identities=22% Similarity=0.203 Sum_probs=71.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|++|||||||++.|++.-.... . +. .+ . . . ... ......
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v------~-~~--~g-------------t-------T--~-d~~---~~~i~~ 269 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV------T-DL--PG-------------T-------T--R-DVV---ESQLVV 269 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCC------S-CC--TT-------------C-------C--H-HHH---HHEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccc------c-CC--CC-------------e-------e--E-EEE---EEEEEE
Confidence 3799999999999999999987421100 0 00 00 0 0 0 000 001112
Q ss_pred cCCCccccccchhHHhHHH-----HHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 496 NGSDVVLVDTAGRMQDNEP-----LMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~-----LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
.+..+.++||+|-...... +.+.+ ....++|++++|-+++.+...... +.+..+.. ....++
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~---~~~~~aD~vl~VvD~s~~~~~~~~-----~i~~~l~~-----~piivV 336 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSR---QAANTADLVLLTIDAATGWTTGDQ-----EIYEQVKH-----RPLILV 336 (462)
T ss_dssp TTEEEEECC-----------------------CCCCSCSEEEEEEETTTCSCHHHH-----HHHHHHTT-----SCEEEE
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHh---hhhhcCCEEEEEeccCCCCCHHHH-----HHHHhccC-----CcEEEE
Confidence 3456789999996432111 11111 123678999998888887766542 33333322 356899
Q ss_pred eccccccccchhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 571 LTKFDTIDDKVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 571 lTK~De~~~~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
+||+|......-..+. ....+.|++.++ +|+++.+|
T Consensus 337 ~NK~Dl~~~~~~~~~~-~~~~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 337 MNKIDLVEKQLITSLE-YPENITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp EECTTSSCGGGSTTCC-CCTTCCCEEEEBTTTTBSHHHH
T ss_pred EECCCCCcchhhHHHH-HhccCCcEEEEECCCCCCHHHH
Confidence 9999986322111000 001356777776 66666543
No 258
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.76 E-value=1e-05 Score=77.57 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.7
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHH
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
+++++++.... ..++|+|++||||||+++.+++
T Consensus 15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhc
Confidence 45566665433 3689999999999999999864
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.76 E-value=1.2e-05 Score=76.49 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=30.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+++|+|||||||||+++.|++ +.+|.|.+.+.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccch
Confidence 899999999999999999987 6678898887654
No 260
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.75 E-value=6.2e-05 Score=69.46 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=53.0
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~De 576 (621)
+...++||+|....+. +..... .+.+.+++|-+.+.... ......+...+..+.... .....-.+++||+|.
T Consensus 56 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 128 (177)
T 1wms_A 56 VTMQIWDTAGQERFRS-LRTPFY-----RGSDCCLLTFSVDDSQS-FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128 (177)
T ss_dssp EEEEEEECCCCGGGHH-HHGGGG-----TTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTC
T ss_pred EEEEEEeCCCchhhhh-hHHHHH-----hcCCEEEEEEECcCHHH-HHHHHHHHHHHHHHccccccCCCcEEEEEECCcc
Confidence 3567889999655332 222222 56788877665543221 111122223333332211 122345799999997
Q ss_pred cccc--hhHHHHhHH-HhCCcEEEEe--cCCCCCcc
Q 007024 577 IDDK--VGAALSMVY-VSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 577 ~~~~--vG~~ls~~~-~~g~PI~fvg--~Gq~v~DL 607 (621)
.... .-.+..++. ..+.|+..++ +|+++.++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 129 SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp SSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred cccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 5222 233444555 4567877766 66666543
No 261
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.75 E-value=0.00013 Score=72.90 Aligned_cols=147 Identities=18% Similarity=0.091 Sum_probs=75.4
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
.+..|+|||.+|||||||++.|.+.-......- ..++ | ....... +
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~-~~~~-T-----------~~~~~~~-~-------------------- 65 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLG-ATSV-T-----------RACTTGS-R-------------------- 65 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------C-----------CSCEEEE-E--------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCC-CCCc-c-----------ccEEEEE-E--------------------
Confidence 345899999999999999999976321110000 0000 0 0000000 0
Q ss_pred hhcCCCccccccchh--------HHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCC
Q 007024 494 TRNGSDVVLVDTAGR--------MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQL 565 (621)
Q Consensus 494 ~~~~~d~vliDtSGg--------~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~ 565 (621)
...+..+.++||+|- ......+.+++. .....++.+|+|.+++. ....+. ..+ +.+..+........
T Consensus 66 ~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~--~~~~~~d~il~V~d~~~-~~~~~~-~~~-~~l~~~~~~~~~~~ 140 (247)
T 3lxw_A 66 RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL--LSAPGPHALLLVTQLGR-FTAQDQ-QAV-RQVRDMFGEDVLKW 140 (247)
T ss_dssp EETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH--HHTTCCSEEEEEEETTB-CCHHHH-HHH-HHHHHHHCGGGGGG
T ss_pred EECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH--hcCCCCCEEEEEEeCCC-CCHHHH-HHH-HHHHHHhChhhhcc
Confidence 012345678999984 222233444432 22378999999887763 544332 122 33333221110123
Q ss_pred ceEEEeccccccccchh---------HHHHhHHHhCCcEEEEe
Q 007024 566 IDGILLTKFDTIDDKVG---------AALSMVYVSGAPVMFVG 599 (621)
Q Consensus 566 it~IIlTK~De~~~~vG---------~~ls~~~~~g~PI~fvg 599 (621)
.-+++.+|.|......- .+-.++...|.+..++.
T Consensus 141 ~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~ 183 (247)
T 3lxw_A 141 MVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFD 183 (247)
T ss_dssp EEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECC
T ss_pred EEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEe
Confidence 45677889987532221 24556667777766554
No 262
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.73 E-value=5e-05 Score=73.28 Aligned_cols=149 Identities=13% Similarity=0.186 Sum_probs=78.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+++-..+...... .+.|. ... .+.+ .
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t-~~~~~-~~~------------~~~~--------------------~ 71 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT-IGVDF-MIK------------TVEI--------------------N 71 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC-CSEEE-EEE------------EEEE--------------------T
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc-cceeE-EEE------------EEEE--------------------C
Confidence 357999999999999999998763211100000 00010 000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...+.||+|....+ .+..... .+.+.+++|-+.+... .......+...+..+. .....-.++.||+
T Consensus 72 ~~~~~l~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~---~~~~piilv~NK~ 141 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFR-SITQSYY-----RSANALILTYDITCEE-SFRCLPEWLREIEQYA---SNKVITVLVGNKI 141 (201)
T ss_dssp TEEEEEEEEEECCSGGGH-HHHGGGS-----TTCSEEEEEEETTCHH-HHHTHHHHHHHHHHHS---CTTCEEEEEEECG
T ss_pred CEEEEEEEEECCCcHHHH-HHHHHHH-----hcCCEEEEEEECCCHH-HHHHHHHHHHHHHHhc---CCCCCEEEEEECC
Confidence 012346788999975532 2222222 5678888877665321 1111112222232222 1223457889999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+++.++
T Consensus 142 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 142 DLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179 (201)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 986321 2334556677888887776 77776654
No 263
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.73 E-value=4.4e-05 Score=72.47 Aligned_cols=148 Identities=11% Similarity=0.075 Sum_probs=77.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.|||||||++.+++--..... ..+ ++ ......+.. .
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~------~~t--~~---------~~~~~~~~~------------------~ 72 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY------DPT--LE---------STYRHQATI------------------D 72 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCC------CTT--CC---------EEEEEEEEE------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc------CCC--CC---------ceEEEEEEE------------------C
Confidence 457999999999999999998863111000 000 00 000000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...++||+|... ..+..... .+.+.+++|-+++... .......+...+..+... ....-.++.||+
T Consensus 73 ~~~~~~~l~Dt~G~~~--~~~~~~~~-----~~~d~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~--~~~piilv~NK~ 142 (196)
T 2atv_A 73 DEVVSMEILDTAGQED--TIQREGHM-----RWGEGFVLVYDITDRG-SFEEVLPLKNILDEIKKP--KNVTLILVGNKA 142 (196)
T ss_dssp TEEEEEEEEECCCCCC--CHHHHHHH-----HHCSEEEEEEETTCHH-HHHTHHHHHHHHHHHHTT--SCCCEEEEEECG
T ss_pred CEEEEEEEEECCCCCc--ccchhhhh-----ccCCEEEEEEECcCHH-HHHHHHHHHHHHHHhhCC--CCCcEEEEEECc
Confidence 1123466889999765 22233333 3457777776654311 111111222223332221 123457999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCC-CCCcc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQ-SYTDL 607 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq-~v~DL 607 (621)
|....+ .-.+..++...+.|+..++ +|+ ++.++
T Consensus 143 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 143 DLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp GGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 986321 2345566777788877776 666 55543
No 264
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.72 E-value=0.00022 Score=75.14 Aligned_cols=41 Identities=12% Similarity=0.181 Sum_probs=35.3
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
+.+|+ ++.|.|++|+||||++..||..+...++.|++....
T Consensus 43 l~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 43 FNKGS--LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp BCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 45888 999999999999999999998777677888887654
No 265
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.71 E-value=6.3e-05 Score=70.53 Aligned_cols=148 Identities=16% Similarity=0.216 Sum_probs=79.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.|||||||++.|.+-....... .-.+.+ +.... +.+ .
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~t~~~~-~~~~~------------~~~--------------------~ 60 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELA-ATIGVD-FKVKT------------ISV--------------------D 60 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC-CCCSEE-EEEEE------------EEE--------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCC-CccceE-EEEEE------------EEE--------------------C
Confidence 3579999999999999999997532110000 000000 00000 000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK 573 (621)
...+.+.++||+|....+ .+..... .+.+.+|+|-+++.. .. ...+...+..+..... ....-.+++||
T Consensus 61 ~~~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~ii~v~d~~~~---~s-~~~~~~~~~~i~~~~~~~~~p~ilv~nK 130 (195)
T 1x3s_A 61 GNKAKLAIWDTAGQERFR-TLTPSYY-----RGAQGVILVYDVTRR---DT-FVKLDNWLNELETYCTRNDIVNMLVGNK 130 (195)
T ss_dssp TEEEEEEEEEECSSGGGC-CSHHHHH-----TTCCEEEEEEETTCH---HH-HHTHHHHHHHHTTCCSCSCCEEEEEEEC
T ss_pred CeEEEEEEEeCCCchhhh-hhhHHHh-----ccCCEEEEEEECcCH---HH-HHHHHHHHHHHHHhcCcCCCcEEEEEEC
Confidence 112456788999965432 2233333 577888887766432 11 2222333444433221 22345789999
Q ss_pred ccccccc--hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 574 FDTIDDK--VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 574 ~De~~~~--vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+|..... .-.+..++...+.|+..++ +|+++.+
T Consensus 131 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 131 IDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp TTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred CcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 9985322 2346667777888876665 5665544
No 266
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.71 E-value=3.6e-05 Score=73.03 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=53.4
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +..... .+.+.+|+|-+.+.... ......+.+.+..+.. ....-.+++||+|..
T Consensus 75 ~~l~l~Dt~G~~~~~~-~~~~~~-----~~~d~iilV~D~~~~~s-~~~~~~~~~~i~~~~~---~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 75 IRLQIWDTAGQERFNS-ITSAYY-----RSAKGIILVYDITKKET-FDDLPKWMKMIDKYAS---EDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEECCSGGGHH-HHHHHH-----HHCSEEEEEEETTCHHH-HHTHHHHHHHHHHHSC---TTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHHHHH-HHHHHh-----cCCCEEEEEEECcCHHH-HHHHHHHHHHHHHhcC---CCCcEEEEEECcccc
Confidence 3567889999765432 333333 45688888776654321 1111222233333322 224458999999986
Q ss_pred ccc---hhHHHHhHHH-hCCcEEEEe--cCCCCCcc
Q 007024 578 DDK---VGAALSMVYV-SGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~---vG~~ls~~~~-~g~PI~fvg--~Gq~v~DL 607 (621)
..+ .-.+..++.. .+.|+..++ +|+++.++
T Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 145 TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 321 1233444444 367776665 56665544
No 267
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.71 E-value=0.00015 Score=68.54 Aligned_cols=143 Identities=14% Similarity=0.055 Sum_probs=75.3
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
+...++|+|++|||||||++.+++-....... ...+.|+ . .+.+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~---~t~~~~~-----------~--~~~~-------------------- 62 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEES---PEGGRFK-----------K--EIVV-------------------- 62 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC---TTCEEEE-----------E--EEEE--------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC---CCcceEE-----------E--EEEE--------------------
Confidence 34689999999999999999887522110000 0000000 0 0000
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEec
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLT 572 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlT 572 (621)
....+...+.||+|....+ .. .+.+.+++|-+.+. ... ...+...+..+..... ....-.++.|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~------~~-----~~~~~~i~v~d~~~---~~s-~~~~~~~~~~i~~~~~~~~~piilv~n 127 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ------FA-----AWVDAVVFVFSLED---EIS-FQTVYNYFLRLCSFRNASEVPMVLVGT 127 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH------HH-----HHCSEEEEEEETTC---HHH-HHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred CCEEEEEEEEECCCChhhh------ee-----cCCCEEEEEEECcC---HHH-HHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 0011345678999876543 12 34577777655543 221 2222234444433221 1234578889
Q ss_pred cccccc-----cchhHHHHhHHHhC-CcEEEEe--cCCCCCcc
Q 007024 573 KFDTID-----DKVGAALSMVYVSG-APVMFVG--CGQSYTDL 607 (621)
Q Consensus 573 K~De~~-----~~vG~~ls~~~~~g-~PI~fvg--~Gq~v~DL 607 (621)
|+|... -..-.+..++...+ .++..++ +|+++.++
T Consensus 128 K~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~l 170 (184)
T 3ihw_A 128 QDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170 (184)
T ss_dssp CTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHH
T ss_pred CcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHH
Confidence 999731 12334566777776 7877766 66666554
No 268
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.71 E-value=0.00023 Score=70.54 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=91.9
Q ss_pred eEEEEEecC-CCCHHHHHHHHHHhHhhcCcEEEEccccccee------eeeeh----hh-------hhhhh-------cc
Q 007024 416 YVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS------GAVEQ----LR-------THARR-------LQ 470 (621)
Q Consensus 416 ~iiaLVGpN-GvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri------gaveQ----l~-------~~~~~-------L~ 470 (621)
++|+|+|.. |+||||+...||..+...+.+|+++.+|.... |.-.. +. .+.+. -+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 82 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTEN 82 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTT
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCC
Confidence 378887765 69999999999999988888999999997321 10000 00 00000 12
Q ss_pred cceeecCCCCC----HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHH
Q 007024 471 VPIFEKGYEKD----PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQ 546 (621)
Q Consensus 471 v~l~~~~~~~d----~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q 546 (621)
+.+.......+ ......+.++.+....||++++|++++... ....+. ...|.+++|.+|. ..+
T Consensus 83 l~~lp~~~~~~~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~~~---~~~~~l-----~~ad~vi~v~~~~----~~s- 149 (260)
T 3q9l_A 83 LYILPASQTRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIET---GALMAL-----YFADEAIITTNPE----VSS- 149 (260)
T ss_dssp EEEECCCSCCCTTSSCHHHHHHHHHHHHHTTCSEEEEECCSSSSH---HHHHHH-----HTCSEEEEEECSS----HHH-
T ss_pred EEEecCCCccchhhCCHHHHHHHHHHHhccCCCEEEEcCCCCCCH---HHHHHH-----HhCCEEEEEecCC----hhH-
Confidence 22221111100 112334455554433799999999887643 222333 3467888877663 222
Q ss_pred HHHHHHHHHHhhcCCC------CCCceEEEeccccccccchh---HHHHhHHHhCCcEE
Q 007024 547 LSKFNQKLADLSSSPN------PQLIDGILLTKFDTIDDKVG---AALSMVYVSGAPVM 596 (621)
Q Consensus 547 ~~~f~~~L~~l~~~~~------~~~it~IIlTK~De~~~~vG---~~ls~~~~~g~PI~ 596 (621)
...+...+..+..... ....-++|+++++......+ .+-.+...++.|+.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLV 208 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceE
Confidence 2233344444433221 11356899999986411111 12345566788875
No 269
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.70 E-value=1.2e-05 Score=76.68 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.|||||||++.|.+......... -.+.+.+. ..+. . .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~---------------~~~~---~---------------~ 53 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKA-TIGADFLT---------------KEVM---V---------------D 53 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCC-CCSEEEEE---------------EEEE---S---------------S
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-cccceEEE---------------EEEE---E---------------C
Confidence 35799999999999999999976421111000 00011000 0000 0 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (621)
...+.+.++||+|....+. +.... ..+.+.+|+|-+++.... ......+...+....... .....-.+++||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQS-LGVAF-----YRGADCCVLVFDVTAPNT-FKTLDSWRDEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSC-SCCGG-----GTTCSEEEEEEETTCHHH-HHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHH-hHHHH-----HhCCcEEEEEEECCCHHH-HHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 0123567889999654221 11111 256788888776654321 111111212222222110 012345899999
Q ss_pred ccccccch--hHHHHhHH-HhCCcEEEEe--cCCCCCcc
Q 007024 574 FDTIDDKV--GAALSMVY-VSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~~v--G~~ls~~~-~~g~PI~fvg--~Gq~v~DL 607 (621)
+|.....+ -.+..++. ..+.|+..++ +|+++.++
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp TTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 99862222 23344444 5677877776 66666543
No 270
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.70 E-value=4.3e-05 Score=69.77 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=47.1
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTI 577 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~De~ 577 (621)
...+.||+|....+. +..... ...+.+++|-+.+. .. ....+...+..+.... .....-.++.||+|..
T Consensus 50 ~~~i~D~~g~~~~~~-~~~~~~-----~~~~~~i~v~d~~~---~~-s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 119 (166)
T 3q72_A 50 SLMVYDIWEQDGGRW-LPGHCM-----AMGDAYVIVYSVTD---KG-SFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119 (166)
T ss_dssp EEEEEECC---------------------CCEEEEEEETTC---HH-HHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred EEEEEECCCCccchh-hhhhhh-----hhCCEEEEEEECCC---HH-HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence 456789988664322 222222 45677777655432 22 1222233333333221 1223457899999976
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
..+ .-.+..++...+.|+..++ +|+++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154 (166)
T ss_dssp SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHH
T ss_pred cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Confidence 322 2334566777788887776 67766554
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.69 E-value=2.5e-05 Score=73.66 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=31.2
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G 444 (621)
+++++.+.+| +++|+|||||||||++..|++.+.+..+
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 4566666555 8999999999999999999998876544
No 272
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.68 E-value=3.7e-05 Score=72.74 Aligned_cols=148 Identities=14% Similarity=0.049 Sum_probs=78.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+++-..+... ..+ ++.. ....+.. .
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~------~~t--~~~~---------~~~~~~~------------------~ 67 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAY------VPT--VFEN---------FSHVMKY------------------K 67 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC------CCC--SEEE---------EEEEEEE------------------T
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCcc------CCe--eeee---------eEEEEEE------------------C
Confidence 458999999999999999998763211100 000 0000 0000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...+.||+|....+ .+.... ..+.+.+++|-+.+...........+...+.... ....-.++.||+
T Consensus 68 ~~~~~~~i~Dt~G~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~ 137 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYD-RLRPLS-----YADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI----DTAKTVLVGLKV 137 (194)
T ss_dssp TEEEEEEEEEECCSGGGT-TTGGGG-----CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC----TTSEEEEEEECG
T ss_pred CEEEEEEEEECCCcHHHH-HHhHhh-----ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEECh
Confidence 112345788999965432 111111 2577888887766542111111122223333221 224557899999
Q ss_pred cccc-----cchhHHHHhHHHhCCc-EEEEe--cCCCCCcc
Q 007024 575 DTID-----DKVGAALSMVYVSGAP-VMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~-----~~vG~~ls~~~~~g~P-I~fvg--~Gq~v~DL 607 (621)
|... ...-.+..++...+.+ +..++ +|+++.++
T Consensus 138 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (194)
T 3reg_A 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV 178 (194)
T ss_dssp GGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred hhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence 9752 1234566777888888 66665 66666553
No 273
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.68 E-value=8.4e-05 Score=72.63 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=75.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..|+|+|+.|||||||++.|++- .......+. ....+.+..+ .
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~------~~~~~~~~~-----------~t~~~~~~~~-------------------~ 72 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA------NVDVQSYSF-----------TTKNLYVGHF-------------------D 72 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT------CEEEECC----------------CEEEEEE-------------------E
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC------CCccCCCCC-----------cceeeeeeee-------------------e
Confidence 458999999999999999998652 111111000 0000000000 0
Q ss_pred hcCCCccccccchh------HHhHH--HHHHHHHhhhhcCCCcEEEEEeCCcCC--CCHHHHHHHHHHHHHHhhcCCCCC
Q 007024 495 RNGSDVVLVDTAGR------MQDNE--PLMRALSKLIYLNNPDLVLFVGEALVG--NDAVDQLSKFNQKLADLSSSPNPQ 564 (621)
Q Consensus 495 ~~~~d~vliDtSGg------~qqr~--~LaraL~~l~~~~~PdlILLVDEpt~G--lD~~~q~~~f~~~L~~l~~~~~~~ 564 (621)
..+..+.++||+|. .+... ...+.+. ...+.+|+|-+++.. .+..... ..+..+.... ..
T Consensus 73 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~~~~----~~~~~l~~~~-~~ 142 (228)
T 2qu8_A 73 HKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA-----HINGVILFIIDISEQCGLTIKEQI----NLFYSIKSVF-SN 142 (228)
T ss_dssp ETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH-----TSSEEEEEEEETTCTTSSCHHHHH----HHHHHHHTCC--C
T ss_pred cCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh-----ccccEEEEEEecccccCcchHHHH----HHHHHHHHhh-cC
Confidence 11235678899997 32211 1122233 566788887777654 2222211 3333443321 12
Q ss_pred CceEEEeccccccccc-hh-----HHHHhHHHhC--CcEEEEe--cCCCCCccc
Q 007024 565 LIDGILLTKFDTIDDK-VG-----AALSMVYVSG--APVMFVG--CGQSYTDLK 608 (621)
Q Consensus 565 ~it~IIlTK~De~~~~-vG-----~~ls~~~~~g--~PI~fvg--~Gq~v~DL~ 608 (621)
..-.+++||+|..... +- .+..++...+ .|+..++ +|+++.+|.
T Consensus 143 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHH
T ss_pred CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHH
Confidence 3458999999986321 11 2334444555 5666665 677766543
No 274
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.68 E-value=8.8e-06 Score=78.56 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=55.9
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+ .+..... .+.+.+|+|-+.+.+..... ...+...+...... ...-.+++||+|..
T Consensus 61 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~---~~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-VLKDVYY-----IGASGAILFFDVTSRITCQN-LARWVKEFQAVVGN---EAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTS-CCCHHHH-----TTCSEEEEEEETTCHHHHHT-HHHHHHHHHHHHCS---SSCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhc-hHHHHHh-----hcCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCC---CCCEEEEEECCCCc
Confidence 346788999966533 2223333 56888888777664322111 11222233333221 13457899999986
Q ss_pred cc-c--hhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DD-K--VGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~-~--vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
.. . .-.+..++...+.|+..++ +|+++.++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 32 1 1234455566788888887 57777654
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.68 E-value=1.7e-05 Score=75.91 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G 444 (621)
+.+|+ +++|+|||||||||+++.|++++.+..+
T Consensus 3 i~~g~--~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 3 NEKGL--LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp -CCCC--EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCC--EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 45677 9999999999999999999998866433
No 276
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.67 E-value=5.5e-05 Score=70.49 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=48.1
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +.... ..+.+.+++|-+++.. .. ...+...+..+.........-.++.||+|..
T Consensus 57 ~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~---~s-~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT-ITTAY-----YRGAMGIMLVYDITNE---KS-FDNIRNWIRNIEEHASADVEKMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEC----------CCTT-----TTTCSEEEEEEETTCH---HH-HHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred EEEEEEcCCCChhhhh-hHHHH-----HhcCCEEEEEEECcCH---HH-HHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence 4567889999654321 11111 2567888887766542 11 1222223333322211224557999999986
Q ss_pred cc---chhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DD---KVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
.. ..-.+..++...+.|+..++ +|+++.++
T Consensus 127 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 127 DKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 32 13445667778888877765 66666543
No 277
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.67 E-value=0.0001 Score=67.40 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=62.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|+.||||||+++.+.+-.... ...+ ++ ...... .
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t--~~-------------~~~~~~-----------------~ 47 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-------TIPT--IG-------------FNVETV-----------------T 47 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC--SS-------------EEEEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-------cCCc--Cc-------------cceEEE-----------------E
Confidence 3589999999999999999986521100 0000 01 000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (621)
..+....++||+|....+. +.... ..+.+.+++|-+++...........+ ..+.... .....-.+++||
T Consensus 48 ~~~~~~~~~Dt~G~~~~~~-~~~~~-----~~~~d~ii~v~d~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~nK 117 (171)
T 1upt_A 48 YKNLKFQVWDLGGLTSIRP-YWRCY-----YSNTDAVIYVVDSCDRDRIGISKSEL----VAMLEEEELRKAILVVFANK 117 (171)
T ss_dssp ETTEEEEEEEECCCGGGGG-GGGGG-----CTTCSEEEEEEETTCCTTHHHHHHHH----HHHHTCGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCChhhhH-HHHHH-----hccCCEEEEEEECCCHHHHHHHHHHH----HHHHhchhhCCCEEEEEEEC
Confidence 0134567889999764321 11111 25788998887776654333322223 2222211 022355899999
Q ss_pred ccccc
Q 007024 574 FDTID 578 (621)
Q Consensus 574 ~De~~ 578 (621)
+|...
T Consensus 118 ~Dl~~ 122 (171)
T 1upt_A 118 QDMEQ 122 (171)
T ss_dssp TTSTT
T ss_pred CCCcC
Confidence 99873
No 278
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=97.67 E-value=5.7e-05 Score=68.84 Aligned_cols=77 Identities=19% Similarity=0.447 Sum_probs=54.7
Q ss_pred CcceEEEeecCcEEEeeccccCCCCCCChhHHHHHHhhhccccCC--------Cceeec----C---C-CCceeeeeEee
Q 007024 1 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGL--------ASFNYD----S---A-GAAYTLKWTFH 64 (621)
Q Consensus 1 Mld~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~~~leer~~~--------~~~~~~----~---~-~~~~~l~w~~~ 64 (621)
|+|.|.|||..|=||+.+.--.-......||++|.+.|..--+-+ ..|.|- + + -.+|+..|-..
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 999999999999999984322334566789999999987432211 112221 0 0 12899999999
Q ss_pred cccceEEEEEecc
Q 007024 65 NELGLVFVAVYQR 77 (621)
Q Consensus 65 n~~~lvfv~vyq~ 77 (621)
+...|+||+-|-.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 9999999999965
No 279
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.67 E-value=4.9e-05 Score=72.67 Aligned_cols=99 Identities=13% Similarity=0.018 Sum_probs=52.3
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEecccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTKFDTI 577 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK~De~ 577 (621)
...+.||+|.......+..... .+.+.+|+|-+.+. ... ...+...+..+..... ....-.++.+|+|..
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~-----~~~d~~ilv~d~~~---~~s-~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 143 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCL-----QTGDAFLIVFSVTD---RRS-FSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHH-----HHCSEEEEEEETTC---HHH-HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred EEEEEecCCCccchhhhHHHhh-----ccCCEEEEEEECCC---HHH-HHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence 4456799887554333333333 35677777655542 221 1222233333322111 123457899999986
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
..+ .-.+..++...+.|+..++ +|+++.+
T Consensus 144 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 322 2344556667788877766 5665544
No 280
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.65 E-value=8.1e-05 Score=82.01 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=70.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|++|||||||++.|++.-...-..+.-.+.|+. ... +..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~---------------~~~--------------------i~~ 278 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYI---------------EEC--------------------FIH 278 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---------------------------------CEE--------------------EEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEE---------------EEE--------------------EEE
Confidence 369999999999999999987631100000000000000 000 011
Q ss_pred cCCCccccccchhHHhHHHHHHH-H-HhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRA-L-SKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~Lara-L-~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.++.+.++||+|-......+-.. + .......++|++|+|-+++.+..... .......+..+. .....+++||
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~~l~-----~~piIvV~NK 352 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAAHP-----AAKFLTVANK 352 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHHHCT-----TSEEEEEEEC
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHHhcC-----CCCEEEEEEC
Confidence 23467899999975422111110 0 01123367899999988887765421 112223344333 2456889999
Q ss_pred ccccccchhHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 574 FDTIDDKVGAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~~vG~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
+|......-..-.+......|++.++ +|+++.+|
T Consensus 353 ~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 353 LDRAANADALIRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp TTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred cCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHH
Confidence 99873322211112222246877776 67776553
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=1.8e-05 Score=75.15 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=28.3
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEE
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMM 448 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I 448 (621)
.|+ +++|+|||||||||+++.|++.+.+ ..+.|..
T Consensus 4 ~g~--~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRK--TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCC--EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 466 9999999999999999999998763 3455543
No 282
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.64 E-value=0.0001 Score=80.08 Aligned_cols=142 Identities=23% Similarity=0.291 Sum_probs=74.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.++|||.+|||||||++.|++-- ..+.. |+ .|. + .+.....+ ...
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~------~~~v~-~~--~g~-----T-~d~~~~~~--------------------~~~ 47 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK------KAIVE-DE--EGV-----T-RDPVQDTV--------------------EWY 47 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEE--------------------EET
T ss_pred EEEEECCCCCCHHHHHHHHhCCC------Cceec-CC--CCC-----c-cceeeEEE--------------------EEC
Confidence 79999999999999999997531 11111 10 000 0 00000000 011
Q ss_pred CCCccccccchhHHh--------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceE
Q 007024 497 GSDVVLVDTAGRMQD--------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDG 568 (621)
Q Consensus 497 ~~d~vliDtSGg~qq--------r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~ 568 (621)
+....++||+|-... -..++... ..+.|.+|+|-+.+.++...+. .+.+.++.. . ....
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~-----~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~---~---~p~i 114 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNM-----IREADLVLFVVDGKRGITKEDE--SLADFLRKS---T---VDTI 114 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHH-----HTTCSEEEEEEETTTCCCHHHH--HHHHHHHHH---T---CCEE
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHH-----HHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc---C---CCEE
Confidence 234568899995421 11122222 2688999999888888876553 233444322 1 3357
Q ss_pred EEeccccccccchhHHH-HhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 569 ILLTKFDTIDDKVGAAL-SMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 569 IIlTK~De~~~~vG~~l-s~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
++++|+|.. ......+ .-.+..|. ++..++ +|+++.+|
T Consensus 115 lv~NK~D~~-~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L 156 (439)
T 1mky_A 115 LVANKAENL-REFEREVKPELYSLGFGEPIPVSAEHNINLDTM 156 (439)
T ss_dssp EEEESCCSH-HHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred EEEeCCCCc-cccHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence 999999985 2211111 12234565 555554 66666543
No 283
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.64 E-value=0.00024 Score=78.16 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC-------CCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G-------lD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
++.+.++||+|-..... .+..-. ...|.+|||.+++.| ...... .....+. ... ...-++
T Consensus 110 ~~~~~iiDTPG~~~f~~-~~~~~~-----~~aD~~llVvDa~~g~~~~~~~~~~qt~--e~~~~~~---~~~--~~~iIv 176 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVP-NAIMGI-----SQADMAILCVDCSTNAFESGFDLDGQTK--EHMLLAS---SLG--IHNLII 176 (483)
T ss_dssp SCEEEEECCCCCGGGHH-HHHHHH-----TTCSEEEEEEECCC------CCCCHHHH--HHHHHHH---HTT--CCCEEE
T ss_pred CceEEEEECCCcHHHHH-HHHHhh-----hhCCEEEEEEECCCCccccccchhhhHH--HHHHHHH---HcC--CCcEEE
Confidence 45678999999765432 333333 578999998888776 333322 2212222 111 122468
Q ss_pred Eeccccccccc---h----hHHHHhHHHh-----CCcEEEEe--cCCCCCcccC
Q 007024 570 LLTKFDTIDDK---V----GAALSMVYVS-----GAPVMFVG--CGQSYTDLKK 609 (621)
Q Consensus 570 IlTK~De~~~~---v----G~~ls~~~~~-----g~PI~fvg--~Gq~v~DL~~ 609 (621)
++||+|..... . ..+..+.... +.|++.++ +|+++.++..
T Consensus 177 viNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 177 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred EEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 89999987311 1 1222223333 45777766 8888887643
No 284
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.64 E-value=4.2e-05 Score=72.16 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
++.|+|+|..|||||||++.|++
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999864
No 285
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.63 E-value=1.5e-05 Score=73.78 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
+..++|+|+.||||||+++.|++
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 286
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.63 E-value=0.00015 Score=67.58 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEecCCCCHHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg 437 (621)
.++|+|+.||||||+++.+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999875
No 287
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.62 E-value=3.6e-05 Score=71.55 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=52.3
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...++||+|....+. +.... ..+.+.+++|-+++...........+...+..... ...-.++.||+|...
T Consensus 54 ~~~i~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDR-LRPLS-----YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP----NTPIILVGTKLDLRD 123 (186)
T ss_dssp EEEEECCCCSGGGTT-TGGGG-----CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST----TSCEEEEEECHHHHT
T ss_pred EEEEEECCCCHhHHH-HHHHh-----ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC----CCCEEEEeEcccccc
Confidence 456889998754321 11111 25678888877665421111111112223332221 234579999999863
Q ss_pred cc---------------hhHHHHhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 579 DK---------------VGAALSMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 579 ~~---------------vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
.. .-.+..++...+. |+..++ +|+++.+|
T Consensus 124 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 170 (186)
T 1mh1_A 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170 (186)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred cchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHH
Confidence 21 1234455666776 777766 67766543
No 288
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.61 E-value=4.5e-05 Score=73.25 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
+..|+|+|+.||||||+++.|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999999886
No 289
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.60 E-value=0.00012 Score=75.74 Aligned_cols=118 Identities=23% Similarity=0.186 Sum_probs=66.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc--ccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC--DTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~--Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
.++|+|.+|||||||++.|.+.- +.+... .+.| ....++ + .
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~------~~ivs~~~~tTr----------~~i~~i--~-------------------~ 51 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK------VAPISPRPQTTR----------KRLRGI--L-------------------T 51 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC------CSCCCSSSCCCC----------SCEEEE--E-------------------E
T ss_pred EEEEECCCCCCHHHHHHHHhCCc------eeeecCCCCcee----------EEEEEE--E-------------------E
Confidence 79999999999999999998531 111110 0111 000001 0 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhh--hhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKL--IYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l--~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
..+....++||+|-...+..+...+... ....+.|.+++|-+++.+....+. .+ +..+.... ......+++|
T Consensus 52 ~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~--~i---~~~l~~~~-~~~p~ilV~N 125 (301)
T 1wf3_A 52 EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDE--LV---ARALKPLV-GKVPILLVGN 125 (301)
T ss_dssp ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHH--HH---HHHHGGGT-TTSCEEEEEE
T ss_pred eCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHH--HH---HHHHHhhc-CCCCEEEEEE
Confidence 1134577899999654221221111111 122678999999899888776542 22 22333221 1245689999
Q ss_pred ccccc
Q 007024 573 KFDTI 577 (621)
Q Consensus 573 K~De~ 577 (621)
|+|..
T Consensus 126 K~Dl~ 130 (301)
T 1wf3_A 126 KLDAA 130 (301)
T ss_dssp CGGGC
T ss_pred CcccC
Confidence 99987
No 290
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.60 E-value=1.7e-05 Score=73.83 Aligned_cols=99 Identities=15% Similarity=0.020 Sum_probs=50.8
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~De 576 (621)
+...++||+|....+ .+..... .+.+.+++|-+.+.. +.. ..+...+..+.... .....-.++.||+|.
T Consensus 54 ~~~~l~Dt~G~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~-~s~---~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYS-IFPQTYS-----IDINGYILVYSVTSI-KSF---EVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEEECCCCCTTC-CCCGGGT-----TTCSEEEEEEETTCH-HHH---HHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEEeCCCchhhh-HHHHHHH-----hcCCEEEEEEECCCH-HHH---HHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 345678998855421 1111111 467888877665431 111 12222222221111 112345789999997
Q ss_pred ccc---chhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 577 IDD---KVGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 577 ~~~---~vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
... ..-.+..++...+.|+..++ +|+++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHH
T ss_pred hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence 422 23456677888899877665 4554443
No 291
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.59 E-value=7.1e-05 Score=70.93 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=51.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC---CCCceEEEeccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN---PQLIDGILLTKF 574 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~---~~~it~IIlTK~ 574 (621)
+...+.||+|....+. +.... ..+.+.+|+|-+++... .. ..+...+..+..... ....-.+++||+
T Consensus 73 ~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~-s~---~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKE-QISQY-----WNGVYYAILVFDVSSME-SF---ESCKAWFELLKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp EEEEEEETTTTHHHHH-HHSTT-----CCCCCEEEEEEETTCHH-HH---HHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred EEEEEEECCCcHHHHH-HHHHH-----HhhCcEEEEEEECCCHH-HH---HHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence 4567899999765322 22222 25678888877665432 11 222233333322111 224568999999
Q ss_pred cccc-c-c--hhHHHHhHHHhCCcEEEEe--c-CCCCCccc
Q 007024 575 DTID-D-K--VGAALSMVYVSGAPVMFVG--C-GQSYTDLK 608 (621)
Q Consensus 575 De~~-~-~--vG~~ls~~~~~g~PI~fvg--~-Gq~v~DL~ 608 (621)
|... . . .-.+..++...+.|+..++ + |+++.++.
T Consensus 143 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~ 183 (208)
T 2yc2_C 143 DLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPF 183 (208)
T ss_dssp -------CCCHHHHHHHHHHTTCEEEECCC-------CHHH
T ss_pred ccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHH
Confidence 9863 1 1 2456677778888887776 6 77777643
No 292
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.59 E-value=4.4e-05 Score=70.80 Aligned_cols=146 Identities=19% Similarity=0.172 Sum_probs=72.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+.+-..+.. +. .+........+ .. .
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~----------~~-------~t~~~~~~~~~-----~~-------------~ 52 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTD----------YV-------PTVFDNFSANV-----VV-------------N 52 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------CBCCC-----C---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC----------CC-------CeeeeeEEEEE-----EE-------------C
Confidence 34799999999999999999875211100 00 00000000000 00 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH-HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS-KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~-~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+...+.||+|....+. +.... ..+.+.+++|-+++... ...... .+...+.... ....-.++.||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~----~~~piilv~nK 121 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNR-LRPLS-----YRGADVFILAFSLISKA-SYENVSKKWIPELKHYA----PGVPIVLVGTK 121 (182)
T ss_dssp -----CEEECCCC-CTTTT-TGGGG-----GTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHC----TTCCEEEEEEC
T ss_pred CEEEEEEEEECCCChhhhh-hHHhh-----ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhC----CCCCEEEEEec
Confidence 1123456889999654321 11111 25678888876654321 111111 2223333321 12345789999
Q ss_pred ccccccc-------------hhHHHHhHHHhCC-cEEEEe--cCCCCCc
Q 007024 574 FDTIDDK-------------VGAALSMVYVSGA-PVMFVG--CGQSYTD 606 (621)
Q Consensus 574 ~De~~~~-------------vG~~ls~~~~~g~-PI~fvg--~Gq~v~D 606 (621)
+|..... .-.+..++...+. |+..++ +|+++.+
T Consensus 122 ~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (182)
T 3bwd_D 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKG 170 (182)
T ss_dssp HHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHH
T ss_pred hhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHH
Confidence 9986322 1234556677786 766665 6666554
No 293
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.57 E-value=0.00039 Score=67.66 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=84.1
Q ss_pred EEEEE-ecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhh--hcccceeecCCCCCHHHHHHHHHHHH
Q 007024 417 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHAR--RLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 417 iiaLV-GpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~--~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
+|+|+ +--|+||||+...||..+...+ +|+++.+|..... ..+.. .+...+... + .++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~-----~~~~~~~~l~~~vi~~----~-------~l~~l 64 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSA-----TGWGKRGSLPFKVVDE----R-------QAAKY 64 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHH-----HHHHHHSCCSSEEEEG----G-------GHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCH-----HHHhcCCCCCcceeCH----H-------HHHHh
Confidence 56666 4568999999999999998888 9999999985311 11111 011111110 0 22222
Q ss_pred hhcCCCccccccchh-HHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 494 TRNGSDVVLVDTAGR-MQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 494 ~~~~~d~vliDtSGg-~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
...||++++|++++ .... ...+. ...|.++++.+|.. ...... .+.+..+.... . ..-+++++
T Consensus 65 -~~~yD~viiD~p~~~~~~~---~~~~l-----~~aD~viiv~~~~~--~~~~~~---~~~~~~l~~~~-~-~~~~vv~N 128 (209)
T 3cwq_A 65 -APKYQNIVIDTQARPEDED---LEALA-----DGCDLLVIPSTPDA--LALDAL---MLTIETLQKLG-N-NRFRILLT 128 (209)
T ss_dssp -GGGCSEEEEEEECCCSSSH---HHHHH-----HTSSEEEEEECSSH--HHHHHH---HHHHHHHHHTC-S-SSEEEEEC
T ss_pred -hhcCCEEEEeCCCCcCcHH---HHHHH-----HHCCEEEEEecCCc--hhHHHH---HHHHHHHHhcc-C-CCEEEEEE
Confidence 35689999999988 4322 12222 34678888777632 122222 23333333311 1 12579999
Q ss_pred cccccc-cchhHHHHhHHHhCCcEE
Q 007024 573 KFDTID-DKVGAALSMVYVSGAPVM 596 (621)
Q Consensus 573 K~De~~-~~vG~~ls~~~~~g~PI~ 596 (621)
+++... .....+...+...|.|+.
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 129 IIPPYPSKDGDEARQLLTTAGLPLF 153 (209)
T ss_dssp SBCCTTSCHHHHHHHHHHHTTCCBC
T ss_pred ecCCccchHHHHHHHHHHHcCCchh
Confidence 999852 223345555666787754
No 294
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.57 E-value=0.00029 Score=70.57 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=33.5
Q ss_pred ceEEEEEecC-CCCHHHHHHHHHHhHhhcCcEEEEcccccc
Q 007024 415 PYVVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (621)
Q Consensus 415 p~iiaLVGpN-GvGKTTlLakLAg~L~~~~GkV~I~~~Dt~ 454 (621)
+++|+|++.- |+||||+...||..+. .+.+|+++.+|..
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4488887655 6999999999999998 8889999999974
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=0.00042 Score=73.56 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=34.3
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~ 451 (621)
+++|+ ++.|+||+|+|||||+..|+..+.+.+++|.+++.
T Consensus 58 i~~G~--i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGR--IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EETTE--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCc--EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34677 99999999999999999999999888888766543
No 296
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.56 E-value=0.00011 Score=69.01 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
.+.++|+|++||||||+++.+++
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999864
No 297
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.56 E-value=4.5e-05 Score=71.86 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
...|+|+|+.|||||||++.|++.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998754
No 298
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.56 E-value=9e-05 Score=72.06 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=74.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|++--...... .-.+.+ +... .+.+ .
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~-~~~~------------~~~~--------------------~ 58 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVE-FATR------------TLEI--------------------E 58 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCS-EEEE------------EEEE--------------------T
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Ccccce-eEEE------------EEEE--------------------C
Confidence 3479999999999999999987632111000 000000 0000 0000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.++||+|....+. +..... .+.+.+|+|-+.+.... ...+...+..+.........-.+++||+
T Consensus 59 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~vilV~D~~~~~s----~~~~~~~l~~i~~~~~~~~piilv~nK~ 128 (223)
T 3cpj_B 59 GKRIKAQIWDTAGQERYRA-ITSAYY-----RGAVGALIVYDISKSSS----YENCNHWLSELRENADDNVAVGLIGNKS 128 (223)
T ss_dssp TEEEEEEEECCTTTTTTTC-CCGGGT-----TTCCEEEEEEC-CCHHH----HHHHHHHHHHHHHHCC--CEEEEEECCG
T ss_pred CEEEEEEEEECCCccchhh-hHHHHh-----ccCCEEEEEEeCCCHHH----HHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 0113567889999654221 111122 56788888776654321 1222222333322111223457889999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
|....+ .-.+..++...+.|+..++ +|+++.+
T Consensus 129 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 129 DLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 986321 2345566677788877765 6666554
No 299
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=2.5e-05 Score=77.85 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=38.9
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
..+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 38 ~~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~ 85 (254)
T 1ixz_A 38 PSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 85 (254)
T ss_dssp HHHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence 35678888877554 89999999999999999999875 67777776554
No 300
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.55 E-value=0.00012 Score=75.08 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~ 438 (621)
.++|+|.+||||||+++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 7999999999999999999985
No 301
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.55 E-value=0.00012 Score=67.78 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=74.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+++--.... ..+ ++ ......+.. .
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~-------~~t--~~---------~~~~~~~~~------------------~ 50 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-------EKT--ES---------EQYKKEMLV------------------D 50 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCC-------SSC--SS---------SEEEEEEEE------------------T
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-------CCC--cc---------eeEEEEEEE------------------C
Confidence 35799999999999999999886211100 000 00 000000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+...+.||+|..+. ... .+.+.+++|-+.+... .......+.+.+..+.........-.++.||+
T Consensus 51 ~~~~~l~i~Dt~G~~~~------~~~-----~~~d~~ilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 118 (178)
T 2iwr_A 51 GQTHLVLIREEAGAPDA------KFS-----GWADAVIFVFSLEDEN-SFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118 (178)
T ss_dssp TEEEEEEEEECSSSCCH------HHH-----HHCSEEEEEEETTCHH-HHHHHHHHHHHHHHHHCSSSCCCEEEEEEECT
T ss_pred CEEEEEEEEECCCCchh------HHH-----HhCCEEEEEEECcCHH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 01234567899986651 112 3467787776654321 11222222223444433222234567889999
Q ss_pred cccc--c---chhHHHHhHHHh-CCcEEEEe--cCCCCCcc
Q 007024 575 DTID--D---KVGAALSMVYVS-GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~--~---~vG~~ls~~~~~-g~PI~fvg--~Gq~v~DL 607 (621)
|... . ..-.+..++... +.|+..++ +|+++.++
T Consensus 119 Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (178)
T 2iwr_A 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159 (178)
T ss_dssp TCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred cccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence 9721 1 123344455555 57777776 67766654
No 302
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.55 E-value=0.0002 Score=70.13 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=33.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.|+|.|..|+||||+...||..+...+.+|+++.+|.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3666899999999999999999988889999999998
No 303
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.55 E-value=7.8e-05 Score=71.60 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.7
Q ss_pred CceEEEEEecCCCCHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg 437 (621)
+...|+|+|+.||||||+++.+++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345899999999999999999874
No 304
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.55 E-value=2.9e-05 Score=76.76 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=32.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
..+|+ +++|+|+|||||||+++.|+++ +|+|.+.+.+.
T Consensus 17 ~~~g~--~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 17 GTQPF--TVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TCCCE--EEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCce--EEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34676 9999999999999999999997 78888887664
No 305
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.54 E-value=0.00011 Score=74.79 Aligned_cols=166 Identities=14% Similarity=0.111 Sum_probs=88.1
Q ss_pred EEEEEe---cCCCCHHHHHHHHHHhHhhcCcEEEEccccccee---------eeeehhhhhhhh--------------cc
Q 007024 417 VVVFVG---VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS---------GAVEQLRTHARR--------------LQ 470 (621)
Q Consensus 417 iiaLVG---pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri---------gaveQl~~~~~~--------------L~ 470 (621)
+++|++ .-|+||||+...||..+...+.+|+++.+|.... +.-.....+.+. -+
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 115 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVHLTDN 115 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEESSSS
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcccCCC
Confidence 778886 7899999999999999888888999999998541 110000011100 01
Q ss_pred cceeecCCCCC-------------HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCC
Q 007024 471 VPIFEKGYEKD-------------PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEA 537 (621)
Q Consensus 471 v~l~~~~~~~d-------------~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEp 537 (621)
+.+...+.... ......+.++.+ ...||++++||+++.... ...+|. ..|.+|++.+|
T Consensus 116 l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l-~~~yD~IiiD~pp~~~~~--~~~~l~------~aD~viiv~~~ 186 (298)
T 2oze_A 116 LDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPL-KSDYDLIIIDTVPTPSVY--TNNAIV------ASDYVMIPLQA 186 (298)
T ss_dssp EEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGG-GGGCSEEEEEECSSCSHH--HHHHHH------HCSEEEEEECG
T ss_pred eEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHH-hcCCCEEEEECCCCccHH--HHHHHH------HCCeEEEEecC
Confidence 21211111000 001123333332 246899999998876432 122232 25788887777
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEeccccccccc-hhHHHHhHHHhCC
Q 007024 538 LVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDTIDDK-VGAALSMVYVSGA 593 (621)
Q Consensus 538 t~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~De~~~~-vG~~ls~~~~~g~ 593 (621)
... +. .....+.+.+..+.... ....+.++|+|++|.-... ...+-.+....+.
T Consensus 187 ~~~-s~-~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
T 2oze_A 187 EEE-ST-NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSATIKSNLEELYKQHKE 242 (298)
T ss_dssp GGC-CH-HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHHHHHHHHHHHHHTTT
T ss_pred cHH-HH-HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHHHHHHHHHHHHHhcc
Confidence 442 22 22223334444432211 1345678999999975211 1233344555554
No 306
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.54 E-value=7.8e-05 Score=72.16 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
+..++|+|+.||||||+++.+++
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 307
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.54 E-value=0.00013 Score=72.88 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=87.7
Q ss_pred eEEEEEe-cCCCCHHHHHHHHHHhHhhcCcEEEEcccccce-----eeeeehhhhhhhh-------------cccceeec
Q 007024 416 YVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR-----SGAVEQLRTHARR-------------LQVPIFEK 476 (621)
Q Consensus 416 ~iiaLVG-pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R-----igaveQl~~~~~~-------------L~v~l~~~ 476 (621)
++|+|++ ..|+||||+...||..+...+.+|+++.+|... .|.-. ...+.+. -++.+...
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~-~~~l~~~l~~~~~~~~i~~~~~l~vlp~ 85 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRA-ERGVYHLLQGEPLEGLVHPVDGFHLLPA 85 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCC-SCCHHHHHTTCCGGGTCEEETTEEEECC
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCC-CCCHHHHHcCCCHHHHccccCCEEEEeC
Confidence 3888885 558999999999999998888899999999742 11100 0011110 11222211
Q ss_pred CCCCCHHHHHH------HHHH-HHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHH
Q 007024 477 GYEKDPAIVAK------EAIQ-EATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSK 549 (621)
Q Consensus 477 ~~~~d~~~ia~------~al~-~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~ 549 (621)
+........ ..+. .+....||++++|++++.... ...+|. ..|.+++|.+|.. ........
T Consensus 86 --~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~~~~--~~~~l~------~aD~viiv~~~~~--~s~~~~~~ 153 (257)
T 1wcv_1 86 --TPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSLSPL--TLNALA------AAEGVVVPVQAEY--YALEGVAG 153 (257)
T ss_dssp --CTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSCCHH--HHHHHH------HCSEEEEEEESST--HHHHHHHH
T ss_pred --ChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCCCHH--HHHHHH------HCCeEEEEecCch--HHHHHHHH
Confidence 122211100 1111 121156899999998875421 122222 2477877766632 22333333
Q ss_pred HHHHHHHhhcCC-CCCCceEEEeccccccccchhHHHH-hHHHhCCcE
Q 007024 550 FNQKLADLSSSP-NPQLIDGILLTKFDTIDDKVGAALS-MVYVSGAPV 595 (621)
Q Consensus 550 f~~~L~~l~~~~-~~~~it~IIlTK~De~~~~vG~~ls-~~~~~g~PI 595 (621)
+.+.+..+.... ....+.++|+++++......-.++. +...++.|+
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~~~~~~l~~~~~~~~ 201 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQQVEAQLRAHFGEKV 201 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHHHHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHHHHHHHHHHHccccc
Confidence 444555443221 2234568999999874212222233 333457664
No 308
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=97.54 E-value=0.00067 Score=65.77 Aligned_cols=34 Identities=12% Similarity=-0.038 Sum_probs=29.8
Q ss_pred eEEEEEec-CCCCHHHHHHHHHHhHhhcCcEEEEc
Q 007024 416 YVVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA 449 (621)
Q Consensus 416 ~iiaLVGp-NGvGKTTlLakLAg~L~~~~GkV~I~ 449 (621)
++++|+|. .|+||||+...||..+...+.+|++.
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 37888887 58999999999999998888899884
No 309
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.53 E-value=2.8e-05 Score=78.86 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=38.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+++++++.++.| ++|+||||+||||+++.|++.+. .+.|.+.+.+.
T Consensus 63 ~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~ 109 (278)
T 1iy2_A 63 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 109 (278)
T ss_dssp HHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence 4677788876554 89999999999999999999875 67787776554
No 310
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.52 E-value=0.00023 Score=72.16 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHH
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
|....++|+|.+|||||||++.|.+
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSS
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhC
Confidence 4345799999999999999999864
No 311
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.52 E-value=0.00049 Score=69.05 Aligned_cols=167 Identities=14% Similarity=0.089 Sum_probs=87.8
Q ss_pred EEEEEecC-CCCHHHHHHHHHHhHhhcCcEEEEcccccceeee--eehh---------hhhhh----hcccceeecCCC-
Q 007024 417 VVVFVGVN-GVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGA--VEQL---------RTHAR----RLQVPIFEKGYE- 479 (621)
Q Consensus 417 iiaLVGpN-GvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Riga--veQl---------~~~~~----~L~v~l~~~~~~- 479 (621)
+|+|++.- |+||||+...||..+...+.+|+++.+|...... .... ..+.. .-++.+...+..
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~~~ 99 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFLL 99 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGGGS
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccccC
Confidence 78877654 7999999999999998888899999999753110 0000 00000 001111111000
Q ss_pred ---------CC--HHHHHHHHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH
Q 007024 480 ---------KD--PAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS 548 (621)
Q Consensus 480 ---------~d--~~~ia~~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~ 548 (621)
.. ......+.++.+....||++++|++++.........++. ..|.+|+|.+|... .. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~------~aD~viiv~~~~~~-s~-~~-- 169 (262)
T 2ph1_A 100 PKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDA------KPTGVVVVSTPQEL-TA-VI-- 169 (262)
T ss_dssp TTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHH------CCSEEEEEECSSSC-CH-HH--
T ss_pred CCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhc------cCCeEEEEecCccc-hH-HH--
Confidence 01 112233333322225689999999987643211111111 35778777776532 22 11
Q ss_pred HHHHHHHHhhcCCCCCCceEEEecccccccc------c---hhHHHHhHHHhCCcEE
Q 007024 549 KFNQKLADLSSSPNPQLIDGILLTKFDTIDD------K---VGAALSMVYVSGAPVM 596 (621)
Q Consensus 549 ~f~~~L~~l~~~~~~~~it~IIlTK~De~~~------~---vG~~ls~~~~~g~PI~ 596 (621)
+.+.+..+... ...+-++|++++|..+. . ...+-.+...+|.|+.
T Consensus 170 -~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 223 (262)
T 2ph1_A 170 -VEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFF 223 (262)
T ss_dssp -HHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEE
T ss_pred -HHHHHHHHHhC--CCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeE
Confidence 22333333332 23466899999874210 1 1224556677888854
No 312
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.51 E-value=0.00019 Score=80.09 Aligned_cols=86 Identities=17% Similarity=0.039 Sum_probs=51.0
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
++.+.++||+|.........+.+ ...|.+|+|.+++.|...... ..+..+.... ..-.+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l------~~aD~~IlVvDa~~g~~~~t~-----~~~~~~~~~~---ipiivviNK~Dl 146 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTL------TAVDCCLMVIDAAKGVEDRTR-----KLMEVTRLRD---TPILTFMNKLDR 146 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGG------GGCSEEEEEEETTTCSCHHHH-----HHHHHHTTTT---CCEEEEEECTTS
T ss_pred CeEEEEEECCCChhHHHHHHHHH------HHCCEEEEEEeCCccchHHHH-----HHHHHHHHcC---CCEEEEEcCcCC
Confidence 45678999999755333232322 467889888889888765432 2233222222 235789999998
Q ss_pred cccch-hHHHHhHHHhCCcEE
Q 007024 577 IDDKV-GAALSMVYVSGAPVM 596 (621)
Q Consensus 577 ~~~~v-G~~ls~~~~~g~PI~ 596 (621)
..... ..+-.+....+.++.
T Consensus 147 ~~~~~~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 147 DIRDPMELLDEVENELKIGCA 167 (529)
T ss_dssp CCSCHHHHHHHHHHHHCCEEE
T ss_pred ccccHHHHHHHHHHHhCCCcc
Confidence 74333 223344555666543
No 313
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.51 E-value=0.00014 Score=72.60 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
+..|+|+|++|||||||++.|++
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999986
No 314
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.51 E-value=1.5e-05 Score=76.15 Aligned_cols=147 Identities=16% Similarity=0.072 Sum_probs=76.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.|++-....... .+ .+. .. ..... . .
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~------~t--~~~---------~~-~~~~~--~---------------~ 68 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEGYD------PT--VEN---------TY-SKIVT--L---------------G 68 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSCCC------CC--SEE---------EE-EEEEC-------------------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCCC------Cc--cce---------EE-EEEEE--E---------------C
Confidence 4579999999999999999998632111000 00 000 00 00000 0 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK 573 (621)
...+...++||+|....+. +.... ..+.+.+++|-+.+. .. ....+...+..+..... ....-.+++||
T Consensus 69 ~~~~~~~l~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~---~~-s~~~~~~~~~~i~~~~~~~~~piilv~nK 138 (201)
T 3oes_A 69 KDEFHLHLVDTAGQDEYSI-LPYSF-----IIGVHGYVLVYSVTS---LH-SFQVIESLYQKLHEGHGKTRVPVVLVGNK 138 (201)
T ss_dssp --CEEEEEEEECCCCTTCC-CCGGG-----TTTCCEEEEEEETTC---HH-HHHHHHHHHHHHHC-----CCCEEEEEEC
T ss_pred CEEEEEEEEECCCccchHH-HHHHH-----HhcCCEEEEEEeCCC---HH-HHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 1234567889999554221 11111 256788888766543 21 12233334444433211 12345789999
Q ss_pred ccccccc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 574 FDTIDDK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 574 ~De~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
+|....+ .-.+..++...+.|+..++ +|+++.+
T Consensus 139 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred ccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 9975222 2345667778888877765 4444433
No 315
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.50 E-value=0.0012 Score=68.62 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=38.3
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
+..|+.+.--+.+|+ ++.|.|++|+||||++..+|......+..|++.+..
T Consensus 55 ~~~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CHHHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred hHHHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 334555554467888 999999999999999999997665555667666554
No 316
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.48 E-value=0.00016 Score=77.60 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=53.6
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC-CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl-D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
..+.++||+|....... +..-. ...|.+++|.+++.+. .+... .....+..+.. ..-.+++||+|.
T Consensus 75 ~~~~iiDtPGh~~~~~~-~~~~~-----~~~D~~ilVvda~~~~~~~qt~--~~~~~~~~~~~-----~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMAT-MLSGA-----ALMDGAILVVAANEPFPQPQTR--EHFVALGIIGV-----KNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHH-HHHHH-----TTCSEEEEEEETTSCSSCHHHH--HHHHHHHHHTC-----CCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHH-HHHHH-----hhCCEEEEEEECCCCCCcHHHH--HHHHHHHHcCC-----CCEEEEEECccc
Confidence 35778999996543332 32333 5789999888888875 43332 22233332211 234789999998
Q ss_pred cccch-hHHHH-hHHH------hCCcEEEEe--cCCCCCc
Q 007024 577 IDDKV-GAALS-MVYV------SGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 577 ~~~~v-G~~ls-~~~~------~g~PI~fvg--~Gq~v~D 606 (621)
.+... -.... +... .+.|+++++ +|+++.+
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~ 181 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDS 181 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHH
Confidence 73321 11111 1111 167888887 6666543
No 317
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.46 E-value=9.5e-05 Score=69.11 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
..++|+|++|||||||++.|++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999874
No 318
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.46 E-value=9.9e-05 Score=69.46 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+.++|+|++|||||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998753
No 319
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=8.5e-05 Score=69.46 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.9
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+|+ +++|+|+|||||||+++.|++.+ |.+.+.+.+.
T Consensus 7 ~g~--~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 7 DHH--IYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TSE--EEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCc--EEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 455 99999999999999999999876 6677766544
No 320
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.45 E-value=0.00013 Score=69.98 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=63.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.|||||||++.+++-..+..+ .+... ....+.+ . .
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~~~-------~~~~~----------~~~~~~~-----~--------------~ 50 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-------TSITD----------SSAIYKV-----N--------------N 50 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCCBC-------CCCSC----------EEEEEEC-----S--------------S
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccc-------CCcce----------eeEEEEe-----c--------------C
Confidence 348999999999999999998863211111 00000 0000000 0 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH----HHHHHHHHHhhcCCCCCCceEEE
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL----SKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~----~~f~~~L~~l~~~~~~~~it~II 570 (621)
..++...++||+|....+..+..... .+++.+++|-+++. ..... ..+.+.+..... ......-.++
T Consensus 51 ~~~~~~~i~Dt~G~~~~~~~~~~~~~-----~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv 121 (214)
T 2fh5_B 51 NRGNSLTLIDLPGHESLRFQLLDRFK-----SSARAVVFVVDSAA---FQREVKDVAEFLYQVLIDSMA-LKNSPSLLIA 121 (214)
T ss_dssp TTCCEEEEEECCCCHHHHHHHHHHHG-----GGEEEEEEEEETTT---HHHHHHHHHHHHHHHHHHHHT-STTCCEEEEE
T ss_pred CCccEEEEEECCCChhHHHHHHHHHH-----hhCCEEEEEEECCC---cCHHHHHHHHHHHHHHhhhhh-cccCCCEEEE
Confidence 01356789999998765543444444 56788888776654 22111 122222222111 1122356899
Q ss_pred eccccccc
Q 007024 571 LTKFDTID 578 (621)
Q Consensus 571 lTK~De~~ 578 (621)
.||+|...
T Consensus 122 ~nK~Dl~~ 129 (214)
T 2fh5_B 122 CNKQDIAM 129 (214)
T ss_dssp EECTTSTT
T ss_pred EECCCCCC
Confidence 99999863
No 321
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.44 E-value=1.4e-05 Score=83.66 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=29.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH----hhcCcEEEEcccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL----LQHKVSVMMAACD 452 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L----~~~~GkV~I~~~D 452 (621)
..++|+||||+||||+++.||+.+ .+.+|.+...+.|
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 389999999999999999999988 5556665554443
No 322
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.44 E-value=0.0003 Score=83.32 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=52.6
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCC--cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~P--dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+..+..+|||++|++.||++|. .+| +++|| ||||+|||+.+.. .+.+.|+.+.+. +.++|+++.
T Consensus 515 l~r~~~tLSGGEkQRV~LA~aL~-----~~~~~~llIL-DEPTagLdp~~~~-~L~~~L~~Lr~~----G~TVIvVeH 581 (993)
T 2ygr_A 515 LSRAAATLSGGEAQRIRLATQIG-----SGLVGVLYVL-DEPSIGLHQRDNR-RLIETLTRLRDL----GNTLIVVEH 581 (993)
T ss_dssp TTCBGGGCCHHHHHHHHHHHHHT-----TCCCSCEEEE-ECTTTTCCHHHHH-HHHHHHHHHHHT----TCEEEEECC
T ss_pred cCCCcccCCHHHHHHHHHHHHHh-----hCCCCcEEEE-eCcccCCCHHHHH-HHHHHHHHHHHc----CCEEEEECC
Confidence 46677889999999999999999 874 67777 9999999999864 555788888653 677888774
No 323
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.43 E-value=6.1e-05 Score=73.24 Aligned_cols=28 Identities=29% Similarity=0.240 Sum_probs=25.6
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhh
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~ 441 (621)
+|+ +++|+|||||||||+++.|++.+.+
T Consensus 7 ~g~--~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGL--LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCC--EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCc--EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 566 9999999999999999999998865
No 324
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.42 E-value=9.4e-05 Score=70.65 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
...++|+|+.||||||+++.+++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999886
No 325
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.42 E-value=0.00016 Score=68.62 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
...++|+|+.||||||+++.+++
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999875
No 326
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.42 E-value=0.00034 Score=76.14 Aligned_cols=100 Identities=13% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCC-------HHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGND-------AVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD-------~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+..+.++||+|..+......+. . ..+|.+|||.+++.|.- +... +.+..+.... ...-++
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~-~-----~~aD~~ilVVDa~~g~~e~~~~~~~qt~-----e~l~~~~~~~--v~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGG-A-----SQADLAVLVISARKGEFETGFEKGGQTR-----EHAMLAKTAG--VKHLIV 160 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhh-H-----hhCCEEEEEEECCCCccccccCCCchHH-----HHHHHHHHcC--CCeEEE
Confidence 4567899999966543222222 2 56899999888887642 2221 2222222221 111368
Q ss_pred Eeccccccccc-----h----hHHHHhHHHhC------CcEEEEe--cCCCCCcccC
Q 007024 570 LLTKFDTIDDK-----V----GAALSMVYVSG------APVMFVG--CGQSYTDLKK 609 (621)
Q Consensus 570 IlTK~De~~~~-----v----G~~ls~~~~~g------~PI~fvg--~Gq~v~DL~~ 609 (621)
++||+|..... . -.+..++...| .|++.++ +|+++.++..
T Consensus 161 viNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999985211 1 12223333333 5788877 8999887544
No 327
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.41 E-value=3.9e-05 Score=77.55 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=35.8
Q ss_pred cccccccccccccc---CCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 399 SIDILRDVHAAKEQ---RKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 399 ~~~iL~dIs~~i~~---Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
...+|++++|.+.+ |+ +++|+|++||||||+.+.|++.+.
T Consensus 31 ~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999 99 999999999999999999998763
No 328
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.41 E-value=0.00015 Score=70.36 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=77.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..|+|+|+.|||||||++.+++--..... ..+ ++. .....+.. ..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~~ 72 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETY------VPT--VFE---------NYTACLET------------------EE 72 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSC------CCC--SEE---------EEEEEEEC--------------------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCc------CCe--eee---------eEEEEEEE------------------CC
Confidence 47999999999999999998763111000 000 000 00000000 01
Q ss_pred cCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccc
Q 007024 496 NGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFD 575 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~D 575 (621)
..+.+.+.||+|....+. +.... ..+.+.+|+|-+.+...........+...+.... ....-.++.||+|
T Consensus 73 ~~~~l~i~Dt~G~~~~~~-~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D 142 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDN-VRPLC-----YSDSDAVLLCFDISRPETVDSALKKWRTEILDYC----PSTRVLLIGCKTD 142 (214)
T ss_dssp CEEEEEEEEECCSGGGTT-TGGGG-----CTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC----TTSEEEEEEECGG
T ss_pred EEEEEEEEECCCCHhHHH-HHHHH-----cCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEChh
Confidence 123567889999654321 11112 2567888888776643211111222323333332 2245578899999
Q ss_pred cccc---------------chhHHHHhHHHhCC-cEEEEe--cCCC-CCc
Q 007024 576 TIDD---------------KVGAALSMVYVSGA-PVMFVG--CGQS-YTD 606 (621)
Q Consensus 576 e~~~---------------~vG~~ls~~~~~g~-PI~fvg--~Gq~-v~D 606 (621)
...+ ..-.+..++...+. |+..++ +|++ +.+
T Consensus 143 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp GGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred hccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 8631 23346677888888 776665 5654 544
No 329
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.41 E-value=0.00044 Score=62.80 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=62.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.++|+|+.||||||+++.+++-..... ..+ ++ ...... ...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-------~~t--~~-----------~~~~~~-------------------~~~ 42 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-------IPT--IG-----------FNVETV-------------------EYK 42 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-------CCC--SS-----------CCEEEE-------------------ECS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-------cCc--Cc-----------eeEEEE-------------------EEC
Confidence 589999999999999999975221100 000 00 000000 012
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFD 575 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~D 575 (621)
+....+.||+|....+ .+..... .+.+.+++|-+.+........ ...+..+.... .....-.++.||+|
T Consensus 43 ~~~~~i~Dt~G~~~~~-~~~~~~~-----~~~d~~i~v~d~~~~~s~~~~----~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 43 NISFTVWDVGGQDKIR-PLWRHYF-----QNTQGLIFVVDSNDRERVNEA----REELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SCEEEEEECCCCGGGH-HHHHHHT-----TTCSEEEEEEETTCGGGHHHH----HHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEEcCCChhhH-HHHHHHh-----ccCCEEEEEEECCCHHHHHHH----HHHHHHHHhchhhcCCeEEEEEECcC
Confidence 3567889999976543 2333334 678888888776544222222 22333332211 11245689999999
Q ss_pred cc
Q 007024 576 TI 577 (621)
Q Consensus 576 e~ 577 (621)
..
T Consensus 113 l~ 114 (164)
T 1r8s_A 113 LP 114 (164)
T ss_dssp ST
T ss_pred Cc
Confidence 86
No 330
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.41 E-value=0.00018 Score=67.94 Aligned_cols=149 Identities=14% Similarity=0.045 Sum_probs=73.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...|+|+|+.|||||||++.+++-...... ..+ ++. .....+.. .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~------~~t--~~~---------~~~~~~~~------------------~ 65 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFISEY------DPN--LED---------TYSSEETV------------------D 65 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSCC------CTT--CCE---------EEEEEEEE------------------T
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCCccc------CCC--ccc---------eeeEEEEE------------------C
Confidence 357999999999999999998753211000 000 000 00000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
...+.+.+.||+|....+. + .... .+.+.+++|-+.+.. +.......+...+............-.++.||+
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~-~-~~~~-----~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 137 (187)
T 3c5c_A 66 HQPVHLRVMDTADLDTPRN-C-ERYL-----NWAHAFLVVYSVDSR-QSFDSSSSYLELLALHAKETQRSIPALLLGNKL 137 (187)
T ss_dssp TEEEEEEEEECCC---CCC-T-HHHH-----TTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECG
T ss_pred CEEEEEEEEECCCCCcchh-H-HHHH-----hhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECc
Confidence 1123456789999765332 2 2233 457777776655421 111111111122222211000123457999999
Q ss_pred cccccc---hhHHHHhHHHhCCcEEEEec---CCCCCc
Q 007024 575 DTIDDK---VGAALSMVYVSGAPVMFVGC---GQSYTD 606 (621)
Q Consensus 575 De~~~~---vG~~ls~~~~~g~PI~fvg~---Gq~v~D 606 (621)
|....+ .-.+..++...+.|+..++. |+++.+
T Consensus 138 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 138 DMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred chhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 986321 23466677788888766653 444443
No 331
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.41 E-value=0.00027 Score=67.50 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=47.4
Q ss_pred ccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 500 VVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 500 ~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
..+..+|||+++++.||++|+. .....|+++|| |||++|||+.... .+.+.+..+.. ....|++|.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~-~~~~~~~~llL-DEp~a~LD~~~~~-~~~~~l~~~~~-----~~~~ivith 125 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAI-QKFKPAPFYLF-DEIDAHLDDANVK-RVADLIKESSK-----ESQFIVITL 125 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHHSCCSEEEE-ESTTTTCCHHHHH-HHHHHHHHHTT-----TSEEEEECS
T ss_pred cccccCCHHHHHHHHHHHHHHh-cccCCCCEEEE-CCCccCCCHHHHH-HHHHHHHHhcc-----CCEEEEEEe
Confidence 3456789999999999999971 11244688888 9999999998864 45567766653 234666664
No 332
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00044 Score=67.62 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg 437 (621)
+.++|||.+|||||||++.+++
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999875
No 333
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.40 E-value=0.00022 Score=67.15 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.|||||||++.|++--..... ..+ ++ ..+.. ..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------~~t--~~-------------~~~~~-----------------~~ 63 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDM------IPT--VG-------------FNMRK-----------------IT 63 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC------CCC--CS-------------EEEEE-----------------EE
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCcc------CCC--Cc-------------eeEEE-----------------EE
Confidence 457999999999999999999762211100 000 00 00000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (621)
..++.+.++||+|....+. +..... .+.+.+++|-+.+........ ...+..+.... .....-.+++||
T Consensus 64 ~~~~~~~l~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~D~~~~~s~~~~----~~~~~~~~~~~~~~~~piilv~NK 133 (188)
T 1zd9_A 64 KGNVTIKLWDIGGQPRFRS-MWERYC-----RGVSAIVYMVDAADQEKIEAS----KNELHNLLDKPQLQGIPVLVLGNK 133 (188)
T ss_dssp ETTEEEEEEEECCSHHHHT-THHHHH-----TTCSEEEEEEETTCGGGHHHH----HHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred eCCEEEEEEECCCCHhHHH-HHHHHH-----ccCCEEEEEEECCCHHHHHHH----HHHHHHHHhCcccCCCCEEEEEEC
Confidence 1234567899999765332 223333 677888888776543222222 22233332211 012345799999
Q ss_pred cccc
Q 007024 574 FDTI 577 (621)
Q Consensus 574 ~De~ 577 (621)
+|..
T Consensus 134 ~Dl~ 137 (188)
T 1zd9_A 134 RDLP 137 (188)
T ss_dssp TTST
T ss_pred CCCc
Confidence 9986
No 334
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.0003 Score=65.94 Aligned_cols=114 Identities=17% Similarity=0.122 Sum_probs=61.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+++-... . .. .+ +| ...... .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~---~-~~---~t--~~-------------~~~~~~-----------------~ 56 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVV---H-TS---PT--IG-------------SNVEEI-----------------V 56 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCE---E-EE---CC--SC-------------SSCEEE-----------------E
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC---c-Cc---CC--Cc-------------cceEEE-----------------E
Confidence 358999999999999999998742110 0 00 00 00 000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (621)
..+....++||+|....+. +.+... .+.|.+++|-+++...........+ ..+.... .....-.+++||
T Consensus 57 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~d~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 57 INNTRFLMWDIGGQESLRS-SWNTYY-----TNTEFVIVVVDSTDRERISVTREEL----YKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp ETTEEEEEEECCC----CG-GGHHHH-----TTCCEEEEEEETTCTTTHHHHHHHH----HHHHTSGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCCHhHHH-HHHHHh-----cCCCEEEEEEeCCCHHHHHHHHHHH----HHHHhchhhCCCeEEEEEEC
Confidence 1134567899999765322 223333 6788998887777654333332223 3332210 112456899999
Q ss_pred cccc
Q 007024 574 FDTI 577 (621)
Q Consensus 574 ~De~ 577 (621)
+|..
T Consensus 127 ~Dl~ 130 (187)
T 1zj6_A 127 QDVK 130 (187)
T ss_dssp TTST
T ss_pred CCCc
Confidence 9986
No 335
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.39 E-value=0.00028 Score=78.28 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=35.8
Q ss_pred cccccccCCceEEEEEecCCCCHHHHHHHHHH-h-HhhcCcEEEEcccccc
Q 007024 406 VHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY-W-LLQHKVSVMMAACDTF 454 (621)
Q Consensus 406 Is~~i~~Gep~iiaLVGpNGvGKTTlLakLAg-~-L~~~~GkV~I~~~Dt~ 454 (621)
+.+.+..+. .++|+|++||||||+|+.|.. + +....+.|.+...|.-
T Consensus 160 v~ldL~~~p--HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 160 VVADLAKMP--HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEGGGSC--SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred EEEEcccCc--eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 455566666 899999999999999999875 3 3445577777777764
No 336
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00012 Score=69.12 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=76.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+++-..+... ..+ ........+.. .
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~------~~t-----------~~~~~~~~~~~------------------~ 62 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEY------VPT-----------VFDHYAVSVTV------------------G 62 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSC------CCS-----------SCCCEEEEEES------------------S
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCC------CCc-----------ccceeEEEEEE------------------C
Confidence 347999999999999999999853111100 000 00000000000 0
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHH-HHHHHHHHhhcCCCCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLS-KFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~-~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+.+.+.||+|....+ .+.... ..+.+.+++|-+.+... ...... .+...+.... ....-.++.||
T Consensus 63 ~~~~~~~i~D~~G~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~----~~~piilv~nK 131 (194)
T 2atx_A 63 GKQYLLGLYDTAGQEDYD-RLRPLS-----YPMTDVFLICFSVVNPA-SFQNVKEEWVPELKEYA----PNVPFLLIGTQ 131 (194)
T ss_dssp SCEEEEEEECCCCSSSST-TTGGGG-----CTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHS----TTCCEEEEEEC
T ss_pred CEEEEEEEEECCCCcchh-HHHHHh-----cCCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhC----CCCCEEEEEEC
Confidence 012356678999865432 111111 25678888876664321 111111 1222232221 12345799999
Q ss_pred ccccccc---------------hhHHHHhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 574 FDTIDDK---------------VGAALSMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~~---------------vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
+|..... .-.+..++...+. |+..++ +|+++.++
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183 (194)
T ss_dssp TTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred hhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHH
Confidence 9986321 2345566677787 776665 66666553
No 337
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.39 E-value=6.2e-05 Score=83.07 Aligned_cols=141 Identities=23% Similarity=0.216 Sum_probs=77.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
..++|+|++|||||||++.|++.-.+.-..+.-.+.|+.. ..+ ..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~---------------~~i--------------------~~ 288 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---------------EEI--------------------VI 288 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCC---------------EEE--------------------EE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEE---------------EEE--------------------ec
Confidence 4799999999999999999987532110000000111100 000 01
Q ss_pred cCCCccccccchhH-HhH-------HHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCce
Q 007024 496 NGSDVVLVDTAGRM-QDN-------EPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLID 567 (621)
Q Consensus 496 ~~~d~vliDtSGg~-qqr-------~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it 567 (621)
.+..+.++||+|-. ... ...+.... .+.|++|+|-+++.+.+..+. +.+..+. ....
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~-----~~aD~vl~VvD~s~~~s~~~~-----~il~~l~-----~~pi 353 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEI-----EKADIVLFVLDASSPLDEEDR-----KILERIK-----NKRY 353 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH-----HHCSEEEEEEETTSCCCHHHH-----HHHHHHT-----TSSE
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHh-----hcccEEEEEecCCCCCCHHHH-----HHHHHhc-----CCCE
Confidence 23456789999954 211 11122222 457899888888777665432 2232221 1346
Q ss_pred EEEeccccccccchh--HHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 568 GILLTKFDTIDDKVG--AALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 568 ~IIlTK~De~~~~vG--~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
.+++||+|... .+. .+... ...+.|+++++ +|+++.+|.
T Consensus 354 ivV~NK~DL~~-~~~~~~~~~~-~~~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 354 LVVINKVDVVE-KINEEEIKNK-LGTDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp EEEEEECSSCC-CCCHHHHHHH-HTCSTTEEEEEGGGTCCHHHHH
T ss_pred EEEEECccccc-ccCHHHHHHH-hcCCCcEEEEECCCCCCHHHHH
Confidence 89999999863 221 11111 12336888888 888877654
No 338
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.39 E-value=7e-05 Score=80.17 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=37.7
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEE
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMM 448 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I 448 (621)
.+|+++++.++.|+ +++|+||||+||||+++.|++.+ +|.+..
T Consensus 157 ~~l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred HHHHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 56788899999998 99999999999999999999864 677665
No 339
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.38 E-value=0.0002 Score=68.75 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+.+|+|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999999876
No 340
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.38 E-value=0.00029 Score=83.27 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=52.6
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCC--cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~P--dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+..+.++|||++|++.||++|. .+| +++|| ||||+|||+.+.. .+.+.|+.+.+. +.++|+++.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~-----~~~~~~llIL-DEPTagLdp~~~~-~L~~~L~~Lr~~----G~TVIvVeH 564 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIG-----SRLTGVLYVL-DEPSIGLHQRDND-RLIATLKSMRDL----GNTLIVVEH 564 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHT-----TCCCSCEEEE-ECTTTTCCGGGHH-HHHHHHHHHHTT----TCEEEEECC
T ss_pred cCCccccCCHHHHHHHHHHHHHh-----hCCCCCEEEE-eCcccCCCHHHHH-HHHHHHHHHHhC----CCEEEEEec
Confidence 36677889999999999999999 774 77777 9999999998864 455788888643 677888775
No 341
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.37 E-value=5.2e-05 Score=73.43 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=54.9
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+ .+..... .+.+.+++|-+.+..... .....+...+.... ....-.++.||+|..
T Consensus 64 ~~~~i~Dt~G~~~~~-~~~~~~~-----~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFG-GLRDGYY-----IQAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVC----ENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEECSGGGTS-CCCHHHH-----TTCCEEEEEEETTCHHHH-HTHHHHHHHHHHHS----TTCCEEEEEECTTSS
T ss_pred EEEEEEeCCChHHHh-HHHHHHH-----hcCCEEEEEEECCCHHHH-HHHHHHHHHHHHhC----CCCCEEEEEECCccc
Confidence 356788999965432 1222233 577888887766542211 11112222222221 123457899999986
Q ss_pred ccch-hHHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 578 DDKV-GAALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~v-G~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
...+ -.+..++...+.++..++ +|+++.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 165 (221)
T 3gj0_A 133 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP 165 (221)
T ss_dssp SCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred cccccHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 3322 234455667788887776 77777654
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=2.3e-05 Score=78.78 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.9
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHH---HhHhhcCcEEE
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVA---YWLLQHKVSVM 447 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLA---g~L~~~~GkV~ 447 (621)
.+|. +|+|+|||||||||+++.|+ |+..++.|.|.
T Consensus 25 ~~g~--~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAP--VITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSC--EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCc--EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 3566 99999999999999999999 88777888777
No 343
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.37 E-value=0.00049 Score=75.78 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=57.4
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
+..+.++||+|.... ...+..-. ...|.+|||.+++.|..+... +.+..+.... ..+ .+++||+|.
T Consensus 72 ~~~i~iiDtPGh~~~-~~~~~~~~-----~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~--ip~-IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGHADL-IRAVVSAA-----DIIDLALIVVDAKEGPKTQTG-----EHMLILDHFN--IPI-IVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSHHHH-HHHHHHHT-----TSCCEEEEEEETTTCSCHHHH-----HHHHHHHHTT--CCB-CEEEECTTS
T ss_pred CEEEEEEECCChHHH-HHHHHHHH-----hhCCEEEEEEecCCCccHHHH-----HHHHHHHHcC--CCE-EEEEECCCc
Confidence 356789999997542 22222223 678999998888888766543 2222222222 234 899999998
Q ss_pred cccc-hh----HHHHhHHHh----CCcEEEEe--cCCCCCcc
Q 007024 577 IDDK-VG----AALSMVYVS----GAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 577 ~~~~-vG----~~ls~~~~~----g~PI~fvg--~Gq~v~DL 607 (621)
.+.. .- .+..++... +.|++.++ +|+++.+|
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L 179 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDEL 179 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHH
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHH
Confidence 7321 11 122233333 57888887 67776654
No 344
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.36 E-value=9.8e-05 Score=69.92 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=33.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~ 454 (621)
.+++|+|++||||||+++.|+..+...++.+.+...|..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 399999999999999999999999988888876655553
No 345
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.35 E-value=8.4e-05 Score=71.28 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=51.8
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHH-HHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQL-SKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~-~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
+.+.+.||+|....+. +.... ..+.+.+++|-+.+... ..... ..+...+.... ....-.++.||+|.
T Consensus 57 ~~~~i~Dt~G~~~~~~-~~~~~-----~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl 125 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSR-LRPLS-----YRGADIFVLAFSLISKA-SYENVLKKWMPELRRFA----PNVPIVLVGTKLDL 125 (212)
T ss_dssp EEEEEECCCCCCCCCC---CGG-----GTTCSEEEEEEETTCHH-HHHHHHHTHHHHHHHHC----TTCCEEEEEECHHH
T ss_pred EEEEEEECCCcHHHHH-HHHhh-----ccCCCEEEEEEECCCHH-HHHHHHHHHHHHHHHhC----CCCCEEEEEeCHHh
Confidence 3566889998754221 11111 25678888876654321 11111 11222232221 12345799999998
Q ss_pred cccc-----------hhHHHHhHHHhCC-cEEEEe--cCCCCCc
Q 007024 577 IDDK-----------VGAALSMVYVSGA-PVMFVG--CGQSYTD 606 (621)
Q Consensus 577 ~~~~-----------vG~~ls~~~~~g~-PI~fvg--~Gq~v~D 606 (621)
.... .-.+..++...+. |+..++ +|+++.+
T Consensus 126 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 169 (212)
T 2j0v_A 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKA 169 (212)
T ss_dssp HTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHH
T ss_pred hhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHH
Confidence 6321 2345566777786 766665 6666654
No 346
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.34 E-value=0.00025 Score=74.89 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=57.0
Q ss_pred CCccccccchhHH---hHHHHHHHHHhhhhcCCCcEEEEEeCCcC--CCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 498 SDVVLVDTAGRMQ---DNEPLMRALSKLIYLNNPDLVLFVGEALV--GNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 498 ~d~vliDtSGg~q---qr~~LaraL~~l~~~~~PdlILLVDEpt~--GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
..+.++||+|-.. ....+...+.+. ....+++|+|.+.+. +.++......+...|..+.... ....-.+++|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~--i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l-~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRH--IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL-TERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHH--HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST-TTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHH--HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh-cCCCEEEEEE
Confidence 4578899998532 111122222211 134678877777654 2567666555555555543211 1234579999
Q ss_pred cccccccchhHHHHhHHHhC--CcEEEEe--cCCCCCcc
Q 007024 573 KFDTIDDKVGAALSMVYVSG--APVMFVG--CGQSYTDL 607 (621)
Q Consensus 573 K~De~~~~vG~~ls~~~~~g--~PI~fvg--~Gq~v~DL 607 (621)
|+|... .--.+-.+....+ .|+..++ +|+.+.+|
T Consensus 283 K~Dl~~-~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL 320 (342)
T 1lnz_A 283 KMDMPE-AAENLEAFKEKLTDDYPVFPISAVTREGLREL 320 (342)
T ss_dssp CTTSTT-HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHH
T ss_pred CccCCC-CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHH
Confidence 999873 3223334445555 4665555 56666543
No 347
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.33 E-value=0.00018 Score=72.42 Aligned_cols=125 Identities=18% Similarity=0.245 Sum_probs=64.1
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
+..++|+|..|||||||++.|.+--... . +.+. +. +.. .....+ .
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~------~--~~~~-~~-----t~~-~~~~~~--------------------~ 80 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVR------V--SPFQ-AE-----GLR-PVMVSR--------------------T 80 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSC------C--CSSC-C------CCC-CEEEEE--------------------E
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcc------c--CCCC-Cc-----cee-eEEEEE--------------------E
Confidence 4589999999999999999998621100 0 0000 00 000 000000 0
Q ss_pred hcCCCccccccchhHHh---HHHHHHHHHhhhhcCCCcEEEEEeCCcC-CCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 495 RNGSDVVLVDTAGRMQD---NEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qq---r~~LaraL~~l~~~~~PdlILLVDEpt~-GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
..+..+.++||+|-... .....+.+..++...+++.+|+|..... ..+..+. ..+ +.+...... .......++
T Consensus 81 ~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~-~~~-~~l~~~~~~-~~~~~~ivv 157 (262)
T 3def_A 81 MGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDK-QVV-IAITQTFGK-EIWCKTLLV 157 (262)
T ss_dssp ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHH-HHH-HHHHHHHCG-GGGGGEEEE
T ss_pred ECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHH-HHH-HHHHHHhch-hhhcCEEEE
Confidence 12335678999996321 1233444444444457889999854432 2444331 122 333332211 111245789
Q ss_pred ecccccc
Q 007024 571 LTKFDTI 577 (621)
Q Consensus 571 lTK~De~ 577 (621)
+||+|..
T Consensus 158 ~nK~Dl~ 164 (262)
T 3def_A 158 LTHAQFS 164 (262)
T ss_dssp EECTTCC
T ss_pred EeCcccC
Confidence 9999975
No 348
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.33 E-value=0.00033 Score=77.63 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=66.1
Q ss_pred cccccc-chhHHhHHHHHHHHHhhhhcCCC--cEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 500 VVLVDT-AGRMQDNEPLMRALSKLIYLNNP--DLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 500 ~vliDt-SGg~qqr~~LaraL~~l~~~~~P--dlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
..+..+ |||++|++.||++|. .+| +++|| |||++|+|+... ..+.+.|..++. +.++|++|.--.
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~-----~~~~~~~lil-DEp~~gld~~~~-~~i~~~l~~~~~-----~~~vi~itH~~~ 459 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTV-----LGADTPSVVF-DEVDAGIGGAAA-IAVAEQLSRLAD-----TRQVLVVTHLAQ 459 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHH-----HCCCSSEEEE-CSCSSSCCTHHH-HHHHHHHHHHHH-----HSEEEEECCCHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHH-----hCCCCCEEEE-eCCcCCCCHHHH-HHHHHHHHHHhC-----CCEEEEEecCHH
Confidence 455677 999999999999999 889 99988 999999999876 455577777763 567888886311
Q ss_pred cccchhHHHHhHHHhCCcEEEE----ecCCCCCcccCCCHHH
Q 007024 577 IDDKVGAALSMVYVSGAPVMFV----GCGQSYTDLKKLNVKS 614 (621)
Q Consensus 577 ~~~~vG~~ls~~~~~g~PI~fv----g~Gq~v~DL~~~~~~~ 614 (621)
++. ..-.++++ ..|..+..+..++.+.
T Consensus 460 -------~~~----~~d~~~~~~~~~~~~~~~~~~~~l~~~~ 490 (517)
T 4ad8_A 460 -------IAA----RAHHHYKVEKQVEDGRTVSHVRLLTGDE 490 (517)
T ss_dssp -------HHH----HSSEEEEEECCEETTEECCEEEECCSHH
T ss_pred -------HHH----hCCEEEEEeccccCCceeeeeeeCCcch
Confidence 111 24577777 4555566666655443
No 349
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.43 E-value=3.2e-05 Score=73.88 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=20.6
Q ss_pred CceEEEEEecCCCCHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg 437 (621)
+...++|+|+.||||||+++.+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 345799999999999999988764
No 350
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.31 E-value=8.5e-05 Score=83.29 Aligned_cols=42 Identities=31% Similarity=0.361 Sum_probs=34.7
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc-EEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV-SVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G-kV~I~~~Dt 453 (621)
+.+|+ +++|+|+|||||||+++.|++.+.+.+| .|.+...|.
T Consensus 366 ~~~G~--iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGF--TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCE--EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccce--EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 34777 9999999999999999999999998876 786444443
No 351
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.30 E-value=0.0014 Score=71.04 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
..+.++||+|.........+ -. ..+|.+|||.+++.|..+... .....+..+ . ...-.+++||+|..
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~-~~-----~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~---~--~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMAT-GA-----STCDLAIILVDARYGVQTQTR--RHSYIASLL---G--IKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHH-HH-----TTCSEEEEEEETTTCSCHHHH--HHHHHHHHT---T--CCEEEEEEECTTTT
T ss_pred ceEEEEECCChHHHHHHHHH-HH-----hhCCEEEEEEECCCCCcHHHH--HHHHHHHHc---C--CCeEEEEEEcCcCC
Confidence 45789999997654322222 23 678999998888888755432 111222211 1 12246789999987
Q ss_pred ccc---h----hHHHHhHHHhC-----CcEEEEe--cCCCCCcc
Q 007024 578 DDK---V----GAALSMVYVSG-----APVMFVG--CGQSYTDL 607 (621)
Q Consensus 578 ~~~---v----G~~ls~~~~~g-----~PI~fvg--~Gq~v~DL 607 (621)
+.. + -.+..++...+ .|++.++ +|+++.++
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 311 1 12333444566 5777766 88888764
No 352
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00013 Score=71.22 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.|+ +++|+||+||||||+++.|++.+.
T Consensus 18 ~g~--~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRK--TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCC--EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC--EEEEECcCCCCHHHHHHHHHhhCC
Confidence 566 999999999999999999998765
No 353
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.27 E-value=0.00032 Score=69.93 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=35.1
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.|+ -.+.+.|+.||||||+...++..+...+.+|.+...|+
T Consensus 4 ~g~-l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGR-LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred Cce-EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 444 35888999999999999999998888888999888887
No 354
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.25 E-value=0.0004 Score=81.39 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=51.9
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCc--EEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPD--LVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~Pd--lILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
+..+..+|||++|++.||++|. .+|+ ++|| ||||++||+.+.. .+.++++.+... +.++|+++.
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~-----~~p~~~llIL-DEPT~~Ld~~~~~-~L~~~l~~L~~~----G~TVIvVeH 439 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLY-----SNLFGVVYVL-DEPSAGLHPADTE-ALLSALENLKRG----GNSLFVVEH 439 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTT-----TCCCSCEEEE-ECTTTTCCGGGHH-HHHHHHHHHHTT----TCEEEEECC
T ss_pred cCCcCcCCHHHHHHHHHHHHHh-----hCCCCeEEEe-eCccccCCHHHHH-HHHHHHHHHHHc----CCEEEEEcC
Confidence 5667889999999999999999 8885 6666 9999999998864 555778777653 667777764
No 355
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.25 E-value=0.00043 Score=64.82 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
...++|+|+.||||||+++.+++.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998863
No 356
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.24 E-value=0.00019 Score=71.21 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=31.4
Q ss_pred ccccccccc---cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc
Q 007024 403 LRDVHAAKE---QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (621)
Q Consensus 403 L~dIs~~i~---~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~ 449 (621)
|.++++.+. .|. +|+|.||+||||||++++|+..+.. ++.|...
T Consensus 13 ~~~~~~~~~~~~~g~--~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSA--FITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCE--EEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCe--EEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 344455443 565 9999999999999999999999988 7777543
No 357
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.00023 Score=74.34 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=59.2
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
++..|+|+|..|||||||++.|.+- .+. ....| . ++.+...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~------~~~-~~~pT-----------~----~~~~~~~----------------- 204 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLG------EIV-TTIPT-----------I----GFNVETV----------------- 204 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSS------CCE-EEEEE-----------T----TEEEEEE-----------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCC------CCC-Ccccc-----------c----ceEEEEE-----------------
Confidence 3458999999999999999987531 110 00001 0 0101000
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+..+.++||+|....+. +..... ...+.+|+|-+++...........+.+.+.... .....-.+++||
T Consensus 205 ~~~~~~l~i~Dt~G~~~~~~-~~~~~~-----~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilV~NK 275 (329)
T 3o47_A 205 EYKNISFTVWDVGGQDKIRP-LWRHYF-----QNTQGLIFVVDSNDRERVNEAREELMRMLAEDE---LRDAVLLVFANK 275 (329)
T ss_dssp EETTEEEEEEECC-----CC-SHHHHH-----TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG---GTTCEEEEEEEC
T ss_pred ecCcEEEEEEECCCCHhHHH-HHHHHh-----ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc---cCCCeEEEEEEC
Confidence 01234567899999654322 223333 567888888777543332222222222221111 112345789999
Q ss_pred ccccc
Q 007024 574 FDTID 578 (621)
Q Consensus 574 ~De~~ 578 (621)
+|...
T Consensus 276 ~Dl~~ 280 (329)
T 3o47_A 276 QDLPN 280 (329)
T ss_dssp TTSTT
T ss_pred ccCCc
Confidence 99863
No 358
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.22 E-value=0.0031 Score=65.56 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=34.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.++.+-|..|+||||+...||..+...+.+|+++.+|.
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 47888899999999999999999988888999999997
No 359
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.21 E-value=0.00083 Score=67.98 Aligned_cols=23 Identities=26% Similarity=0.253 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
..++|+|.+||||||+++.|+|.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 37999999999999999999874
No 360
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.21 E-value=0.00054 Score=72.11 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~ 438 (621)
.|+|||..||||||+++.|+|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999874
No 361
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.20 E-value=0.00059 Score=63.70 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=62.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|+.||||||+++.+++--. ...... +| ..... ..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~----~~~~~t-----~~-------------~~~~~-----------------~~ 61 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV----VHTSPT-----IG-------------SNVEE-----------------IV 61 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC----EEEECC-----SS-------------SSCEE-----------------EE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC----CccCCc-----Cc-------------eeeEE-----------------EE
Confidence 45899999999999999999875311 000000 00 00000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK 573 (621)
..+....++||+|....+. +..... .+.|.+++|-+.+...........+ ..+.... .....-.+++||
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~ii~v~D~~~~~s~~~~~~~~----~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 62 INNTRFLMWDIGGQESLRS-SWNTYY-----TNTEFVIVVVDSTDRERISVTREEL----YKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp ETTEEEEEEEESSSGGGTC-GGGGGG-----TTCCEEEEEEETTCTTTHHHHHHHH----HHHHTCGGGTTCEEEEEEEC
T ss_pred ECCEEEEEEECCCCHhHHH-HHHHHh-----ccCCEEEEEEECCCHHHHHHHHHHH----HHHHhChhhCCCeEEEEEEC
Confidence 1234567889999755321 111122 5778888887776654333322223 2332210 122345789999
Q ss_pred cccc
Q 007024 574 FDTI 577 (621)
Q Consensus 574 ~De~ 577 (621)
+|..
T Consensus 132 ~Dl~ 135 (181)
T 2h17_A 132 QDVK 135 (181)
T ss_dssp TTST
T ss_pred CCcc
Confidence 9986
No 362
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.19 E-value=0.00013 Score=85.08 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=62.8
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhc---CcEEEEcccccceeeeeehhhhhhhhcccceeec-CCCCCHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH---KVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEK-GYEKDPAIVAK 487 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~---~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~-~~~~d~~~ia~ 487 (621)
.|+ +++++||||+||||++..+++..... ++.|.+.. +.|..+..+...++..+++.+... ++....
T Consensus 108 ~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~--P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~----- 178 (773)
T 2xau_A 108 NNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ--PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRF----- 178 (773)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE--SCHHHHHHHHHHHHHHTTCCBTTTEEEEETT-----
T ss_pred CCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC--chHHHHHHHHHHHHHHhCCchhheecceecc-----
Confidence 456 89999999999999988886654332 33455432 335444444344444443322100 110000
Q ss_pred HHHHHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcC-CCCHHHHH
Q 007024 488 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALV-GNDAVDQL 547 (621)
Q Consensus 488 ~al~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~-GlD~~~q~ 547 (621)
......+..++-+++|+..+..+...+. .+++++++ |||.. ++|.....
T Consensus 179 -----~~~~~~~~~I~v~T~G~l~r~l~~~~~l-----~~~~~lIl-DEah~R~ld~d~~~ 228 (773)
T 2xau_A 179 -----ENKTSNKTILKYMTDGMLLREAMEDHDL-----SRYSCIIL-DEAHERTLATDILM 228 (773)
T ss_dssp -----EEECCTTCSEEEEEHHHHHHHHHHSTTC-----TTEEEEEE-CSGGGCCHHHHHHH
T ss_pred -----ccccCCCCCEEEECHHHHHHHHhhCccc-----cCCCEEEe-cCccccccchHHHH
Confidence 0001112234445566666655554444 77888888 99986 88765443
No 363
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.18 E-value=0.00018 Score=68.49 Aligned_cols=23 Identities=48% Similarity=0.535 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
+.++|||.+|||||||++.+++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998863
No 364
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.17 E-value=0.00096 Score=65.53 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=56.4
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
.+.+.||+|.++.+. +..... .+.+.+++|-+.+.- +.. ..+...+..+........+-+++-+|.|...
T Consensus 63 ~l~iwDtaGqe~~~~-l~~~~~-----~~a~~~ilv~di~~~-~Sf---~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 63 RLQLWDTAGLERFRS-LIPSYI-----RDSAAAVVVYDITNV-NSF---QQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 132 (216)
T ss_dssp EEEEECCSCTTTCGG-GHHHHH-----TTCSEEEEEEETTCH-HHH---HTHHHHHHHHHHHHTTSSEEEEEEECTTCGG
T ss_pred EEEEEECCCchhhhh-HHHHHh-----ccccEEEEEeecchh-HHH---HHHHHHHHHHHHhcCCCCeEEEEeeccchHh
Confidence 456789999765432 333344 677888887654331 122 2222223222221122234567889999863
Q ss_pred cc---hhHHHHhHHHhCCcEEEEe--cCCCCCc
Q 007024 579 DK---VGAALSMVYVSGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 579 ~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~D 606 (621)
.+ .-.+..++...+.+...++ +|++|.+
T Consensus 133 ~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 32 3456778888999866565 7777765
No 365
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.17 E-value=0.0002 Score=80.13 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=36.9
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~ 450 (621)
++.++++.+ +|+ +++|+||||+||||+++.|++.+.+..+.|.+.+
T Consensus 98 ~l~~~~~~~-~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGP--ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSC--EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHhcccC-CCC--EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 345556665 566 9999999999999999999999977777776554
No 366
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.17 E-value=0.0012 Score=70.58 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=77.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc--ccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA--ACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~--~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
..++++|..|+|||||++.|++.....+...... ..|... .++ ..++.+..... .+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e~------~~giTi~~~~~-------------~~ 61 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAP---EER------ARGITINAAHV-------------EY 61 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCC---EEE------ETTEEEECEEE-------------EE
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCH---HHH------hcCcEEEeeeE-------------Ee
Confidence 3699999999999999999998654332110000 001000 000 00111000000 00
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
...+..+.++||+|...... .+..- ....|.+|+|.+++.|..+... +.+..+.... ...-.+++||
T Consensus 62 ~~~~~~~~iiDtpG~~~f~~-~~~~~-----~~~aD~~ilVvda~~g~~~qt~-----e~l~~~~~~~--vp~iivviNK 128 (397)
T 1d2e_A 62 STAARHYAHTDCPGHADYVK-NMITG-----TAPLDGCILVVAANDGPMPQTR-----EHLLLARQIG--VEHVVVYVNK 128 (397)
T ss_dssp ECSSCEEEEEECSSHHHHHH-HHHHT-----SSCCSEEEEEEETTTCSCHHHH-----HHHHHHHHTT--CCCEEEEEEC
T ss_pred ccCCeEEEEEECCChHHHHH-HHHhh-----HhhCCEEEEEEECCCCCCHHHH-----HHHHHHHHcC--CCeEEEEEEC
Confidence 11245678999999765322 22222 2678999998889888765443 2222222211 1112578999
Q ss_pred ccccccc-h-----hHHHHhHHHhC-----CcEEEEe
Q 007024 574 FDTIDDK-V-----GAALSMVYVSG-----APVMFVG 599 (621)
Q Consensus 574 ~De~~~~-v-----G~~ls~~~~~g-----~PI~fvg 599 (621)
+|...+. . -.+..++...+ .|+++++
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 129 ADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGS 165 (397)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEee
Confidence 9987311 1 12333455555 5877776
No 367
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.17 E-value=0.00075 Score=74.32 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=26.1
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+.++.+.++. -+.|+||+|+||||+++.|++.+
T Consensus 40 ~~~~~g~~~p~----gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPK----GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCS----EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCC----eEEEECCCCCCHHHHHHHHHHHc
Confidence 44555554433 48899999999999999999855
No 368
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.15 E-value=0.0035 Score=65.82 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=35.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
..++.+-|..|+||||+...||..+...+.+|+++++|.
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 458889999999999999999999988888999999995
No 369
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.15 E-value=0.00047 Score=70.72 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHcCCCCccccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 380 SIVQAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 380 ~~v~~al~~~L~~il~p~~~~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
..+...+.+.+..++.... ....|.+++|+||+||||||+.+.|+..+. .+-+.| ..|++|
T Consensus 10 ~~~~~~~~~~~~~~l~~~~------------~~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I-s~D~~R 70 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKK------------AVESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI-DNDTFK 70 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCC------------CCSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE-CTHHHH
T ss_pred HHHHHHHHHHHHHHhcccc------------CCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE-echHhH
Confidence 4556666666777664321 123456999999999999999999987553 233444 567766
No 370
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.15 E-value=0.00059 Score=65.78 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
...++|+|+.|||||||++.+++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999863
No 371
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.14 E-value=0.00019 Score=66.72 Aligned_cols=24 Identities=38% Similarity=0.344 Sum_probs=22.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
+++|+||+||||||+++.|++.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999999874
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.13 E-value=0.00034 Score=66.67 Aligned_cols=37 Identities=22% Similarity=0.097 Sum_probs=32.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
.+++|+|++||||||++.+|+..+...+.+|.+...|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 4899999999999999999999998887777766544
No 373
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.13 E-value=0.0011 Score=68.39 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=72.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATR 495 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~ 495 (621)
+.++|+|+.||||||+++.+.+-..+... +. +..-.++.+....+ .
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-------~~-----------~~~Ti~~~~~~~~~----------------~ 49 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDT-------RR-----------LGATIDVEHSHLRF----------------L 49 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGG-------GG-----------CCCCCSEEEEEEEE----------------T
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc-------cC-----------cCCccceEEEEEEe----------------C
Confidence 47999999999999999998753211100 00 00000111100000 0
Q ss_pred cCCCccccccchhHHhHH----HHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 007024 496 NGSDVVLVDTAGRMQDNE----PLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILL 571 (621)
Q Consensus 496 ~~~d~vliDtSGg~qqr~----~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (621)
.+....+.||+|...... .+..... .+++.+++|-+++... .......+.+.+..+.... +...-.++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~-----~~ad~vi~V~D~t~~~-s~~~l~~~~~~l~~l~~~~-~~~piilv~ 122 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIF-----QMVQVLIHVFDVESTE-VLKDIEIFAKALKQLRKYS-PDAKIFVLL 122 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHH-----TTCSEEEEEEETTCSC-HHHHHHHHHHHHHHHHHHC-TTCEEEEEE
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHh-----ccCCEEEEEEECCChh-hHHHHHHHHHHHHHHHHhC-CCCeEEEEE
Confidence 134567899999765422 1222233 6789999888776643 3233333334444443221 224567889
Q ss_pred ccccccc--cch-------hHHHHhHHHhCC
Q 007024 572 TKFDTID--DKV-------GAALSMVYVSGA 593 (621)
Q Consensus 572 TK~De~~--~~v-------G~~ls~~~~~g~ 593 (621)
+|+|... .+. -.+..++...|.
T Consensus 123 NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 9999874 222 234455666663
No 374
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.12 E-value=0.00055 Score=76.10 Aligned_cols=98 Identities=5% Similarity=0.007 Sum_probs=54.6
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
+....+.||+|...-.. +..... .+++++++|-+++...+. ..+...+..+.. ...-+++.||+|.
T Consensus 97 ~~~~~i~Dt~G~e~~~~-~~~~~l-----~~~d~ii~V~D~s~~~~~----~~~~~~l~~~~~----~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA-SHQFFM-----TRSSVYMLLLDSRTDSNK----HYWLRHIEKYGG----KSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTT-TCHHHH-----HSSEEEEEEECGGGGGGH----HHHHHHHHHHSS----SCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHH-HHHHHc-----cCCcEEEEEEeCCCchhH----HHHHHHHHHhCC----CCCEEEEEECCCc
Confidence 45678999999543222 222222 468899888887765222 222333433322 1345799999998
Q ss_pred cccc---hhHHHHhHHHhCCcEEEEe--cCCCCCccc
Q 007024 577 IDDK---VGAALSMVYVSGAPVMFVG--CGQSYTDLK 608 (621)
Q Consensus 577 ~~~~---vG~~ls~~~~~g~PI~fvg--~Gq~v~DL~ 608 (621)
.... .-.+...+...+.|+..++ +|+++.+|.
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~ 199 (535)
T 3dpu_A 163 NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIA 199 (535)
T ss_dssp CTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHH
Confidence 6321 2234445556788888876 788877653
No 375
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.10 E-value=0.0029 Score=68.68 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=38.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhh-cCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQ-HKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~-~~GkV~I~~~Dt 453 (621)
..|+.+.--+.+|+ ++.|.|++|+||||++..||..... .+..|++.....
T Consensus 188 ~~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 188 KELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp HHHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred HhhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34554444466888 9999999999999999999987665 455787776653
No 376
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.10 E-value=0.00022 Score=66.20 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=58.9
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEA 493 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~ 493 (621)
++..++|+|++||||||+++.+.+ ++..-.. .+ +| ......
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~------~~~~~~~-~t--~~-------------~~~~~~----------------- 57 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI------GEVVTTK-PT--IG-------------FNVETL----------------- 57 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC------SEEEEEC-SS--TT-------------CCEEEE-----------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhc------CCcCccC-Cc--Cc-------------cceEEE-----------------
Confidence 345899999999999999988752 2221000 00 00 000000
Q ss_pred hhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEec
Q 007024 494 TRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLT 572 (621)
Q Consensus 494 ~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlT 572 (621)
...+....+.||+|....+. +.... ..+.+.+++|-+++........ ...+..+.... .....-.+++|
T Consensus 58 ~~~~~~~~i~Dt~G~~~~~~-~~~~~-----~~~~d~ii~v~d~~~~~s~~~~----~~~~~~~~~~~~~~~~piilv~n 127 (183)
T 1moz_A 58 SYKNLKLNVWDLGGQTSIRP-YWRCY-----YADTAAVIFVVDSTDKDRMSTA----SKELHLMLQEEELQDAALLVFAN 127 (183)
T ss_dssp EETTEEEEEEEEC----CCT-TGGGT-----TTTEEEEEEEEETTCTTTHHHH----HHHHHHHTTSSTTSSCEEEEEEE
T ss_pred EECCEEEEEEECCCCHhHHH-HHHHH-----hccCCEEEEEEECCCHHHHHHH----HHHHHHHHcChhhCCCeEEEEEE
Confidence 01124567889998764221 11111 2567888887776655332222 23333333221 12345689999
Q ss_pred ccccc
Q 007024 573 KFDTI 577 (621)
Q Consensus 573 K~De~ 577 (621)
|+|..
T Consensus 128 K~Dl~ 132 (183)
T 1moz_A 128 KQDQP 132 (183)
T ss_dssp CTTST
T ss_pred CCCCC
Confidence 99986
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.09 E-value=0.00034 Score=65.34 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
+..++|+|+.||||||+++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999875
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.09 E-value=0.0011 Score=66.23 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=29.4
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
.|.+++|+|++||||||+.+.|+..+. .+-+.+ ..|.+|
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~-~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVII-DGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEE-CGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEE-ecHHHH
Confidence 355999999999999999999998764 233444 446655
No 379
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.08 E-value=0.0011 Score=68.96 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=31.7
Q ss_pred ccccCCceEEEEEecCCCCHHHHHHHHHHhH-hhc-----CcEEEEcccc
Q 007024 409 AKEQRKPYVVVFVGVNGVGKSTNLAKVAYWL-LQH-----KVSVMMAACD 452 (621)
Q Consensus 409 ~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L-~~~-----~GkV~I~~~D 452 (621)
-++.|+ ++.|.||+|+||||++..|+... .+. ++.|.+....
T Consensus 103 Gl~~G~--i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRT--MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCc--EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 356788 99999999999999999999754 332 5566555543
No 380
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.07 E-value=6.6e-06 Score=78.53 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|....+. +..... .+.+.+++|-+.+... .. ..+...+..+.........-.++.||+|..
T Consensus 82 ~~~~i~Dt~G~~~~~~-~~~~~~-----~~~d~~i~v~d~~~~~-s~---~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRT-ITSSYY-----RGAHGIIVVYDVTDQE-SF---NNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEECCTTCTTCCC-CSCC-------CCCSEEEECC-CCCSH-HH---HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCcHhHHH-HHHHHh-----hcCCEEEEEEECCCHH-HH---HHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 3567889999544221 111112 5678998887765432 22 222333444433322234557889999986
Q ss_pred ccc---hhHHHHhHHHhCCcEEEEe
Q 007024 578 DDK---VGAALSMVYVSGAPVMFVG 599 (621)
Q Consensus 578 ~~~---vG~~ls~~~~~g~PI~fvg 599 (621)
..+ .-.+..++...+.|+..++
T Consensus 152 ~~~~v~~~~~~~~~~~~~~~~~~vS 176 (199)
T 3l0i_B 152 TKKVVDYTTAKEFADSLGIPFLETS 176 (199)
T ss_dssp --CCCCSCC-CHHHHTTTCCBCCCC
T ss_pred ccccCCHHHHHHHHHHcCCeEEEEE
Confidence 322 1234556667788866554
No 381
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.07 E-value=0.0021 Score=60.80 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred CceEEEEEecCCCCHHHHHHHHH
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVA 436 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLA 436 (621)
+...++|+|+.||||||+++.++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
No 382
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.0004 Score=66.27 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
+++|+|++||||||+++.|++.+.+.+.+|.....+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 899999999999999999999988777666655443
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.06 E-value=0.00031 Score=66.03 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=29.3
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcE-EEEcc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS-VMMAA 450 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~Gk-V~I~~ 450 (621)
+|. +++|+|++||||||+++.|++++.+.+.. |.+.+
T Consensus 4 ~g~--~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGC--TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCE--EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCc--EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 455 99999999999999999999998875433 44443
No 384
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.06 E-value=0.00031 Score=75.54 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=32.2
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHH------------hHhhcCcEEEEcc
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAY------------WLLQHKVSVMMAA 450 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg------------~L~~~~GkV~I~~ 450 (621)
..|. .++|||+||||||||++.|++ .+.|+.|.|.+.+
T Consensus 18 ~~g~--~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNL--KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCC--EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 4566 999999999999999999999 3457788887765
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.05 E-value=0.00076 Score=67.84 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
+.+|+|+|++||||||+.+.|+..+...+..+.+...|.+|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 34999999999999999999998877666555545556544
No 386
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.05 E-value=0.00086 Score=71.72 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=27.3
Q ss_pred CceEEEEE-ecCCCCHHHHHHHHHHhHh------hcCcEEEEcccccc
Q 007024 414 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 454 (621)
Q Consensus 414 ep~iiaLV-GpNGvGKTTlLakLAg~L~------~~~GkV~I~~~Dt~ 454 (621)
.+++|+|+ |--|+||||+...||..+. ..+.+|+++.+|..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 35588888 6678999999999999887 46789999999973
No 387
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.04 E-value=0.0016 Score=69.82 Aligned_cols=155 Identities=16% Similarity=0.116 Sum_probs=79.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccccee-eeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRS-GAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~Ri-gaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
..++++|..|+|||||++.|++.....+.. ..|.. ...++... ....++.+..... .+.
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~------~~~~~~~~~d~~~~-e~~~GiTi~~~~~-------------~~~ 71 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPN------VEVKDYGDIDKAPE-ERARGITINTAHV-------------EYE 71 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTT------SCCCCHHHHSCSHH-HHHHTCCCSCEEE-------------EEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCcc------ccccchhhccCCHH-HHHcCCCEEeeee-------------Eec
Confidence 479999999999999999999865433210 00000 00000000 0001111100000 001
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..+..+.++||+|...... .+..-. ...|.+|+|.+++.|...... +.+..+.... ...-.+++||+
T Consensus 72 ~~~~~~~iiDtpG~~~f~~-~~~~~~-----~~aD~~ilVvda~~g~~~qt~-----~~l~~~~~~~--ip~iivviNK~ 138 (405)
T 2c78_A 72 TAKRHYSHVDCPGHADYIK-NMITGA-----AQMDGAILVVSAADGPMPQTR-----EHILLARQVG--VPYIVVFMNKV 138 (405)
T ss_dssp CSSCEEEEEECCCSGGGHH-HHHHHH-----TTCSSEEEEEETTTCCCHHHH-----HHHHHHHHTT--CCCEEEEEECG
T ss_pred cCCeEEEEEECCChHHHHH-HHHHHH-----HHCCEEEEEEECCCCCcHHHH-----HHHHHHHHcC--CCEEEEEEECc
Confidence 1245678999999765332 222223 578888888888888765432 2222222221 11125789999
Q ss_pred cccccc--hh----HHHHhHHHhC-----CcEEEEe--cCCC
Q 007024 575 DTIDDK--VG----AALSMVYVSG-----APVMFVG--CGQS 603 (621)
Q Consensus 575 De~~~~--vG----~~ls~~~~~g-----~PI~fvg--~Gq~ 603 (621)
|...+. .- .+..++...+ .|+++++ +|++
T Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 139 DMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 987321 11 2233444444 6888776 4544
No 388
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.04 E-value=0.003 Score=65.80 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=27.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEcc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAA 450 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~ 450 (621)
.+.|+||+|+||||+++.+++.+.+. +..+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999988776 33443333
No 389
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.0071 Score=57.74 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=76.5
Q ss_pred eEEEeecCcEEEeeccccCCCCCCChhHHHHHHhhhccccC----CCceeecCCCCceeeeeEeecccceEEEEEecccc
Q 007024 4 QLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSG----LASFNYDSAGAAYTLKWTFHNELGLVFVAVYQRIL 79 (621)
Q Consensus 4 ~~~i~t~gG~vLw~~~~~~~~~~~~~in~li~~~~leer~~----~~~~~~~~~~~~~~l~w~~~n~~~lvfv~vyq~~l 79 (621)
..+.+.+|.+||..++.. . .....+.+.+| +|.. ..+|+++ +|+.++...| |++|+++=.+-.
T Consensus 57 ~Ya~VArg~tiLAE~t~~----~-gnf~~va~~iL--~kip~~~~r~t~~~~----~y~fHyl~~d--gl~yl~i~D~~~ 123 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWC----G-GNFLEVTEQIL--AKIPSENNKLTYSHG----NYLFHYICQD--RIVYLCITDDDF 123 (173)
T ss_dssp EEEEEEETTEEEEEEESS----C-CCHHHHHHHHH--TTSCSSSEEEEEEET----TEEEEEEEET--TEEEEEEEETTS
T ss_pred EEEEEECCCEEEEEccCC----C-CCHHHHHHHHH--HhCCCCCCeEEEEEC----CEEEEEEEEC--CEEEEEEECCcc
Confidence 356788999999984322 2 33457888877 4443 2478999 9999998865 688999877777
Q ss_pred chhhHHHHHHHHHHHHHHhcCCcC---CCccchHHHHHHHHHHH
Q 007024 80 HLLYVDDLLAMMKQSFSEIYDPKR---TDYSDFDEMFRQLRKEA 120 (621)
Q Consensus 80 ~l~y~d~ll~~~~~~f~~~y~~~~---~~~~~f~~~f~~~l~~~ 120 (621)
.-.-.=.||++|+.+|...|+... ..| .|+.+|...|++.
T Consensus 124 ~rr~aF~FLedI~~eF~~~yg~~~~ta~py-a~~~eF~~~L~~~ 166 (173)
T 4afi_A 124 ERSRAFSFLNEVKKRFQTTYGSRAQTALPY-AMNSEFSSVLAAQ 166 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGGTCCTT-TTHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHhchhhhhccCc-chhHHHHHHHHHH
Confidence 666566689999999999997543 345 7898999999765
No 390
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.02 E-value=0.00066 Score=74.49 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=74.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|..|||||||++.|.+-.... ...| + +..+.. +.
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~-------~~~T--~-------------~~~~~~-----------------~~ 362 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPT--V-------------GFNVET-----------------VT 362 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC--S-------------SEEEEE-----------------EE
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCC-------cCCc--c-------------ceeEEE-----------------EE
Confidence 3579999999999999999987632100 0001 0 010000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCC-CCCceEEEecc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPN-PQLIDGILLTK 573 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~-~~~it~IIlTK 573 (621)
..++.+.++||+|....+. +.. ....+.|.+|+|-+.+......... ..+..+..... ....-+++++|
T Consensus 363 ~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~ad~~i~V~D~~~~~s~~~~~----~~~~~~~~~~~~~~~p~ilv~NK 432 (497)
T 3lvq_E 363 YKNVKFNVWDVGGQDKIRP-LWR-----HYYTGTQGLIFVVDCADRDRIDEAR----QELHRIINDREMRDAIILIFANK 432 (497)
T ss_dssp SSSCEEEEEEECCCGGGSG-GGG-----GGGTTCCEEEEEEETTCGGGHHHHH----HHHHHHHTSGGGTTCEEEEEEEC
T ss_pred eCCEEEEEEECCCcHHHHH-HHH-----HHhccCCEEEEEEECcchhHHHHHH----HHHHHHhhhhhcCCCcEEEEEEC
Confidence 1245678999999654322 111 1226789999987776543222222 22333322111 12345799999
Q ss_pred ccccccchhHHHHhHHHhCC--------cEEEEe--cCCCCCcc
Q 007024 574 FDTIDDKVGAALSMVYVSGA--------PVMFVG--CGQSYTDL 607 (621)
Q Consensus 574 ~De~~~~vG~~ls~~~~~g~--------PI~fvg--~Gq~v~DL 607 (621)
+|... ... .-.+....+. |++.++ +|+++.+|
T Consensus 433 ~Dl~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 474 (497)
T 3lvq_E 433 QDLPD-AMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 474 (497)
T ss_dssp CSSSS-CCC-HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred CCCCc-CCC-HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHH
Confidence 99863 211 1223333333 355555 67766543
No 391
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00034 Score=64.72 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+.+|+||||+||||++..|+..+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999998655
No 392
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.01 E-value=0.0013 Score=73.70 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
...|+|+|..|||||||++.|.+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999874
No 393
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.99 E-value=0.0019 Score=67.90 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc-cccccCCceEEEEEecCC
Q 007024 347 MTKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNG 425 (621)
Q Consensus 347 ~~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs-~~i~~Gep~iiaLVGpNG 425 (621)
..++++..-+.++++.+...+. ..|.+..... +....+..-......|+.+- --++.|+ ++.|+||+|
T Consensus 64 ~~~~is~~~~~~~~~~a~~~~~----~~~~~~~~~~-----~~~~~~~~i~TG~~~LD~~LgGGl~~G~--i~~I~G~~G 132 (343)
T 1v5w_A 64 NVKGLSEAKVDKIKEAANKLIE----PGFLTAFEYS-----EKRKMVFHITTGSQEFDKLLGGGIESMA--ITEAFGEFR 132 (343)
T ss_dssp --------------------------CCSEEHHHHH-----HHGGGCCCBCCSCHHHHHHTTSSBCSSE--EEEEECCTT
T ss_pred HhhCCCHHHHHHHHHHHHhhcc----cCCCcHHHHH-----hhhcccceeecCChhHHHHhcCCCCCCe--EEEEECCCC
Confidence 4478888888888887765432 1233322211 11111110011122232221 1345777 999999999
Q ss_pred CCHHHHHHHHHHhH-hh-----cCcEEEEccc
Q 007024 426 VGKSTNLAKVAYWL-LQ-----HKVSVMMAAC 451 (621)
Q Consensus 426 vGKTTlLakLAg~L-~~-----~~GkV~I~~~ 451 (621)
+||||++..|+... .+ .++.|.+...
T Consensus 133 sGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 133 TGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp CTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 99999999999753 32 3556655544
No 394
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=96.99 E-value=0.0021 Score=68.45 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=34.1
Q ss_pred CceEEEEE-ecCCCCHHHHHHHHHHhHh------hcCcEEEEcccccc
Q 007024 414 KPYVVVFV-GVNGVGKSTNLAKVAYWLL------QHKVSVMMAACDTF 454 (621)
Q Consensus 414 ep~iiaLV-GpNGvGKTTlLakLAg~L~------~~~GkV~I~~~Dt~ 454 (621)
.+++|+|+ |--|+||||+...||..+. ..+.+|+++.+|..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 35588888 5668999999999998887 35789999999973
No 395
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.96 E-value=0.00031 Score=76.31 Aligned_cols=94 Identities=17% Similarity=0.175 Sum_probs=54.8
Q ss_pred CccccccchhHHh------HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 499 DVVLVDTAGRMQD------NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 499 d~vliDtSGg~qq------r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
.+.++||+|-... +..-++... .+.|.+|+|-++ +..... . ..+..+.... ..-.+++|
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l-----~~aD~vllVvD~--~~~~~~--~---~~l~~l~~~~---~piIvV~N 148 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVF-----YRADCGILVTDS--APTPYE--D---DVVNLFKEME---IPFVVVVN 148 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHH-----TSCSEEEEECSS--SCCHHH--H---HHHHHHHHTT---CCEEEECC
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHH-----hcCCEEEEEEeC--CChHHH--H---HHHHHHHhcC---CCEEEEEe
Confidence 4678899885421 122233334 678999888777 444332 2 3333333332 34579999
Q ss_pred cccccccchh-HHHHhHHHhCCcEEEEe--cCCCCCcc
Q 007024 573 KFDTIDDKVG-AALSMVYVSGAPVMFVG--CGQSYTDL 607 (621)
Q Consensus 573 K~De~~~~vG-~~ls~~~~~g~PI~fvg--~Gq~v~DL 607 (621)
|+|......- .+-.+....+.|+++++ +|+++.+|
T Consensus 149 K~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL 186 (423)
T 3qq5_A 149 KIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDI 186 (423)
T ss_dssp CCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTH
T ss_pred CcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHH
Confidence 9998743322 23334445678888776 77777664
No 396
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.96 E-value=0.0026 Score=73.17 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
++.+.++||+|...-.....+.+. ..|.+|+|.+++.+...... ..+ ..+.... ....+++||+|.
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~ilVvDa~~g~~~~t~-~~~----~~~~~~~---~p~ivviNKiD~ 141 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMR------VLDGAIVVFDSSQGVEPQSE-TVW----RQAEKYK---VPRIAFANKMDK 141 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHH------HCSEEEEEEETTTCSCHHHH-HHH----HHHHHTT---CCEEEEEECTTS
T ss_pred CeEEEEEECcCccchHHHHHHHHH------HCCEEEEEEECCCCcchhhH-HHH----HHHHHcC---CCEEEEEECCCc
Confidence 456889999997654443444443 46888888889888776543 222 2222221 345789999998
Q ss_pred cccchhHHHH
Q 007024 577 IDDKVGAALS 586 (621)
Q Consensus 577 ~~~~vG~~ls 586 (621)
.....-.++.
T Consensus 142 ~~~~~~~~~~ 151 (691)
T 1dar_A 142 TGADLWLVIR 151 (691)
T ss_dssp TTCCHHHHHH
T ss_pred ccCCHHHHHH
Confidence 7444333333
No 397
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.95 E-value=0.0018 Score=74.56 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=45.1
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
++...++||+|...-.....+++. ..|.+|+|.+++.+....+. ..+ ..+.... ....+++||+|.
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~------~aD~~llVvDa~~g~~~~~~-~~~----~~~~~~~---~p~ilviNK~Dl 139 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLR------VLDGAVTVLDAQSGVEPQTE-TVW----RQATTYG---VPRIVFVNKMDK 139 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHH------HCSEEEEEEETTTBSCHHHH-HHH----HHHHHTT---CCEEEEEECTTS
T ss_pred CeeEEEEECcCCcchHHHHHHHHH------HCCEEEEEECCCCCCcHHHH-HHH----HHHHHcC---CCEEEEEECCCc
Confidence 456789999997653333444443 36888888889888776543 222 2222221 345789999998
Q ss_pred cccch
Q 007024 577 IDDKV 581 (621)
Q Consensus 577 ~~~~v 581 (621)
.....
T Consensus 140 ~~~~~ 144 (693)
T 2xex_A 140 LGANF 144 (693)
T ss_dssp TTCCH
T ss_pred cccch
Confidence 74433
No 398
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.0002 Score=69.54 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=25.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH---hhcCcEEE
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL---LQHKVSVM 447 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L---~~~~GkV~ 447 (621)
+++|+||+||||||+++.|++.+ .++.|.+.
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 89999999999999999999876 34444443
No 399
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.93 E-value=0.00066 Score=69.38 Aligned_cols=99 Identities=19% Similarity=0.125 Sum_probs=52.2
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTID 578 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~~ 578 (621)
...+.||+|....+ .+.... ..+.+.+++|-+.+...........+...+..... ...-.++.||+|...
T Consensus 204 ~~~l~Dt~G~~~~~-~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 204 NLGLWDTAGLEDYD-RLRPLS-----YPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP----NTPIILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEECCCGGGT-TTGGGG-----CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT----TSCEEEEEECHHHHT
T ss_pred EEEEEeCCCchhhh-HHHHHh-----ccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC----CCcEEEEEEchhccc
Confidence 34588999865432 111111 25678888877665432111111112223333221 234579999999853
Q ss_pred cc---------------hhHHHHhHHHhCC-cEEEEe--cCCCCCcc
Q 007024 579 DK---------------VGAALSMVYVSGA-PVMFVG--CGQSYTDL 607 (621)
Q Consensus 579 ~~---------------vG~~ls~~~~~g~-PI~fvg--~Gq~v~DL 607 (621)
.. .-.+..++...+. |+..++ +|+++.+|
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 320 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHH
Confidence 21 2234455666776 776666 67666554
No 400
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.91 E-value=0.0003 Score=67.60 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg 437 (621)
++++|+|++||||||+.+.|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999998
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.0005 Score=66.62 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.9
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc--EEEEc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV--SVMMA 449 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G--kV~I~ 449 (621)
.|. +++|+|++||||||+.+.|+..+.+..| .+.+.
T Consensus 24 ~~~--~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGL--TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCE--EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 455 9999999999999999999999986555 45554
No 402
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.90 E-value=0.00051 Score=66.06 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.8
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
+..|. +++|+|++||||||+++.|++.+.
T Consensus 18 ~~~~~--~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 18 GSKTF--IIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp SCCCE--EEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCCe--EEEEECCCCCCHHHHHHHHHHhcC
Confidence 34555 999999999999999999998763
No 403
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.90 E-value=0.0033 Score=64.92 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=47.7
Q ss_pred HCCCCHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHcCCCCccccccccc-cccccCCceEEEEEecCCC
Q 007024 348 TKNVAEEIAEKLCESVAASLEGKKLASFTRISSIVQAAMEEALVRILTPRRSIDILRDVH-AAKEQRKPYVVVFVGVNGV 426 (621)
Q Consensus 348 ~~~V~~~ia~~L~~~v~~~l~g~~~~~~~~~~~~v~~al~~~L~~il~p~~~~~iL~dIs-~~i~~Gep~iiaLVGpNGv 426 (621)
..+++.+-+.++++.+++.+.. .|.+....... ...+..+- .....|+.+- --++.|+ ++.|.|++|+
T Consensus 41 ~~gis~~~a~~~i~~a~~~~~~----~~~~~~~~~~~--~~~~~~i~---TG~~~LD~~l~GGl~~g~--i~~i~G~~gs 109 (322)
T 2i1q_A 41 IEGISEKAAAKMIMGARDLCDL----GFKSGIDLLKQ--RSTVWKLS---TSSSELDSVLGGGLESQS--VTEFAGVFGS 109 (322)
T ss_dssp STTCCHHHHHHHHHHHHHHTTC----SCCCTHHHHHH--HTTCCEEC---CSCHHHHHHTTSSEETTE--EEEEEESTTS
T ss_pred hhCcCHHHHHHHHHHHHHhhhh----cCCcHHHHHHH--hccCCeec---CCChhHHHhcCCCccCCe--EEEEECCCCC
Confidence 4789999999999988776432 23332222110 00001111 1122333221 1345777 9999999999
Q ss_pred CHHHHHHHHHHh
Q 007024 427 GKSTNLAKVAYW 438 (621)
Q Consensus 427 GKTTlLakLAg~ 438 (621)
||||++..++..
T Consensus 110 GKT~la~~la~~ 121 (322)
T 2i1q_A 110 GKTQIMHQSCVN 121 (322)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999999864
No 404
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.88 E-value=0.0029 Score=70.50 Aligned_cols=86 Identities=16% Similarity=0.057 Sum_probs=52.2
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
++.+.++||+|-..-.....+.+ ...|.+|+|.+++.|...... ..+..+.... ....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l------~~aD~allVvDa~~g~~~~t~-----~~~~~~~~~~---iPiivviNK~Dl 146 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYRTL------TAVDSALMVIDAAKGVEPRTI-----KLMEVCRLRH---TPIMTFINKMDR 146 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGG------GGCSEEEEEEETTTCSCHHHH-----HHHHHHHTTT---CCEEEEEECTTS
T ss_pred CEEEEEEECCCchhHHHHHHHHH------HhCCEEEEEEeCCCCCCHHHH-----HHHHHHHHcC---CCEEEEEeCCCC
Confidence 45678999999765433333332 457899998999998876553 2233333322 345789999998
Q ss_pred cccch-hHHHHhHHHhCCcEE
Q 007024 577 IDDKV-GAALSMVYVSGAPVM 596 (621)
Q Consensus 577 ~~~~v-G~~ls~~~~~g~PI~ 596 (621)
..... -.+-.+....+.++.
T Consensus 147 ~~~~~~~~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 147 DTRPSIELLDEIESILRIHCA 167 (528)
T ss_dssp CCSCHHHHHHHHHHHHCCEEE
T ss_pred ccccHHHHHHHHHHhhCCCce
Confidence 63332 234445555666433
No 405
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.88 E-value=0.004 Score=71.58 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCccccccchhHHh--HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHH-hhcCCCCCCceEEEeccc
Q 007024 498 SDVVLVDTAGRMQD--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLAD-LSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 498 ~d~vliDtSGg~qq--r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~-l~~~~~~~~it~IIlTK~ 574 (621)
.++.++||+|-... ...++.... .+.|++|+|.+++.+....+. +.+.. +.... ....+++||+
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i-----~~aD~vL~Vvda~~~~s~~e~-----~~l~~~l~~~~---~~iiiVlNK~ 240 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYV-----NNCHAILFVMRASQPCTLGER-----RYLENYIKGRG---LTVFFLVNAW 240 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHH-----HSSSEEEEEEETTSTTCHHHH-----HHHHHHTTTSC---CCEEEEEECG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHH-----HhCCEEEEEEeCCCccchhHH-----HHHHHHHHhhC---CCEEEEEECc
Confidence 46789999996542 223333333 568999998888877665443 22222 22221 2368999999
Q ss_pred cccc
Q 007024 575 DTID 578 (621)
Q Consensus 575 De~~ 578 (621)
|...
T Consensus 241 Dl~~ 244 (695)
T 2j69_A 241 DQVR 244 (695)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9873
No 406
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.88 E-value=0.00069 Score=64.28 Aligned_cols=121 Identities=13% Similarity=0.184 Sum_probs=64.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
...++|+|..|||||||++.+.+...+.. -.+.+... ......+. .
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~----~~~~~~~~-----------~~~~~~~~-------------------~ 65 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPNE----TLFLESTN-----------KIYKDDIS-------------------N 65 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGGG----GGGCCCCC-----------SCEEEEEC-------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCcc----eeeecccc-----------ceeeeecc-------------------C
Confidence 45899999999999999997765322210 00000000 00000000 0
Q ss_pred hcCCCccccccchhHHhHHHHH--HHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLM--RALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~La--raL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
...+.+.+.||+|....+...- .... .+.+.+|+|-+.+... ......+...+..+.... ....-.++.|
T Consensus 66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~-----~~~~~~i~v~d~~~~~--~~~~~~~~~~l~~~~~~~-~~~piilv~n 137 (196)
T 3llu_A 66 SSFVNFQIWDFPGQMDFFDPTFDYEMIF-----RGTGALIYVIDAQDDY--MEALTRLHITVSKAYKVN-PDMNFEVFIH 137 (196)
T ss_dssp TTSCCEEEEECCSSCCTTCTTCCHHHHH-----HTCSEEEEEEETTSCC--HHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred CCeeEEEEEECCCCHHHHhhhhhccccc-----ccCCEEEEEEECCCch--HHHHHHHHHHHHHHHhcC-CCCcEEEEEe
Confidence 1235678899999754221110 2222 4578888887776652 223344445555442111 2244578899
Q ss_pred ccccc
Q 007024 573 KFDTI 577 (621)
Q Consensus 573 K~De~ 577 (621)
|+|..
T Consensus 138 K~Dl~ 142 (196)
T 3llu_A 138 KVDGL 142 (196)
T ss_dssp CGGGS
T ss_pred ccccC
Confidence 99965
No 407
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.86 E-value=0.0024 Score=73.99 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=55.1
Q ss_pred CccccccchhHH-------h--HHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 499 DVVLVDTAGRMQ-------D--NEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 499 d~vliDtSGg~q-------q--r~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+.+++||+|-.. . ...+-..+..++. ...|++|+|.++..+....+.. .++..+.... ....+
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l----~ll~~L~~~g---~pvIl 222 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDAL----KIAKEVDPQG---QRTIG 222 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHH----HHHHHHCTTC---SSEEE
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHH----HHHHHHHhcC---CCEEE
Confidence 578999999433 1 1122222222332 6789999988887765443321 2334443322 45689
Q ss_pred EeccccccccchhHHHHhHHH------hC-CcEEEEe--cCCCCCccc
Q 007024 570 LLTKFDTIDDKVGAALSMVYV------SG-APVMFVG--CGQSYTDLK 608 (621)
Q Consensus 570 IlTK~De~~~~vG~~ls~~~~------~g-~PI~fvg--~Gq~v~DL~ 608 (621)
++||+|.+ +....+..+... .+ .||++++ +|+++.+|.
T Consensus 223 VlNKiDlv-~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 223 VITKLDLM-DEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp EEECTTSS-CTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHH
T ss_pred EEeCcccC-CcchhhHHHHHHHhhhhhccCCceEEecccccccchhHH
Confidence 99999998 333322222221 11 2455554 777776653
No 408
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.85 E-value=0.0016 Score=66.20 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=33.3
Q ss_pred eEEEEEe-cCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 416 YVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVG-pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
++|+|++ .-|+||||+...||..+...+.+|+++.+|.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3777775 4589999999999999988888999999998
No 409
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.85 E-value=0.0043 Score=67.21 Aligned_cols=98 Identities=15% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCC-------CCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVG-------NDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~G-------lD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+..+.++||+|...... .+..-. ...|.+|+|.+++.| ... |.. +.+..+.... ...-.+
T Consensus 83 ~~~~~iiDtpG~~~f~~-~~~~~~-----~~aD~~ilVvDa~~gsfe~~~~~~~--qt~---~~~~~~~~~~--~~~iiv 149 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVK-NMITGA-----SQADAAILVVSAKKGEYEAGMSVEG--QTR---EHIILAKTMG--LDQLIV 149 (435)
T ss_dssp SCEEEECCCSSSTTHHH-HHHHTS-----SCCSEEEEEEECSTTHHHHHHSTTC--HHH---HHHHHHHHTT--CTTCEE
T ss_pred CeEEEEEECCCcHHHHH-HHHhhh-----hhcCEEEEEEECCCCccccccccch--HHH---HHHHHHHHcC--CCeEEE
Confidence 45688999999765332 222222 678999988888775 221 211 2222121111 112368
Q ss_pred Eecccccccc-----c----hhHHHHhHHHhC-----CcEEEEe--cCCCCCcc
Q 007024 570 LLTKFDTIDD-----K----VGAALSMVYVSG-----APVMFVG--CGQSYTDL 607 (621)
Q Consensus 570 IlTK~De~~~-----~----vG~~ls~~~~~g-----~PI~fvg--~Gq~v~DL 607 (621)
++||+|.... . .-.+..++...+ .|++.++ +|+++.++
T Consensus 150 viNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 150 AVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp EEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred EEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 8999998731 1 122344455555 5677766 78887654
No 410
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0044 Score=65.66 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=34.1
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
++.|+ ++.|.|++|+||||++..++......+++|++....
T Consensus 60 l~~G~--ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 60 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45777 999999999999999999998777777777776653
No 411
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.83 E-value=0.00054 Score=74.02 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=46.3
Q ss_pred ccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 007024 504 DTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTK 573 (621)
Q Consensus 504 DtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK 573 (621)
.+|||+++++.||++|+... ..+|+++|| |||+++||+..+. .+.+.+..+... +...||+|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~-~~~~~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~~----~~~~ii~th 395 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINS-YQPSPFFVL-DEVDAALDITNVQ-RIAAYIRRHRNP----DLQFIVISL 395 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHT-SSCCSEEEE-SSTTTTCCHHHHH-HHHHHHHHHCBT----TBEEEEECS
T ss_pred cCCcchHHHHHHHHHHHHhc-CCCCCEEEe-CCCcccCCHHHHH-HHHHHHHHHhcC----CCEEEEEEC
Confidence 37999999999999998321 246788888 9999999998864 444666655431 456777775
No 412
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.83 E-value=0.0023 Score=68.09 Aligned_cols=102 Identities=23% Similarity=0.213 Sum_probs=59.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHhhc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEATRN 496 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~~~ 496 (621)
.++++|..++|||||++.|. ...+.+ +. ++. .+ ...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi---~~---~~~------------~~--------------------~~~ 58 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSS---DI---TMY------------NN--------------------DKE 58 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEES---SS---EEE------------EE--------------------CSS
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEE---Ee---eEE------------EE--------------------ecC
Confidence 79999999999999999886 111111 11 100 00 012
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec-ccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT-KFD 575 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT-K~D 575 (621)
+..+.++||+|-........+.+ ...|.+|||.+ ..|..+... +.+..+.... ...-.++++ |+|
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~~~------~~aD~ailVvd-~~g~~~qt~-----e~~~~~~~~~--i~~~ivvvNNK~D 124 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLITAL------NISDIAVLCIP-PQGLDAHTG-----ECIIALDLLG--FKHGIIALTRSDS 124 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHHHH------HTCSEEEEEEC-TTCCCHHHH-----HHHHHHHHTT--CCEEEEEECCGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHH------HHCCEEEEEEc-CCCCcHHHH-----HHHHHHHHcC--CCeEEEEEEeccC
Confidence 34578999999765433333333 46788877766 777765443 1222222211 122378899 999
Q ss_pred c
Q 007024 576 T 576 (621)
Q Consensus 576 e 576 (621)
.
T Consensus 125 l 125 (370)
T 2elf_A 125 T 125 (370)
T ss_dssp S
T ss_pred C
Confidence 8
No 413
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.81 E-value=0.00031 Score=65.91 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCC-CCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSP-NPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~-~~~~it~IIlTK~De 576 (621)
....++||+|....+. +.+.. ..+.|.+++|-+++......... ..+..+.... .....-.+++||+|.
T Consensus 66 ~~~~~~Dt~G~~~~~~-~~~~~-----~~~~d~ii~v~d~~~~~s~~~~~----~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRP-YWRCY-----FSDTDAVIYVVDSTDRDRMGVAK----HELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp EEEEEEEECCSSSSCC-CCSSS-----STTCCEEEEEEETTCCTTHHHHH----HHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred EEEEEEECCCCHhHHH-HHHHH-----hhcCCEEEEEEeCCCHHHHHHHH----HHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 4567889998653221 11111 25778888887776553333222 2233332221 123456899999998
Q ss_pred cc
Q 007024 577 ID 578 (621)
Q Consensus 577 ~~ 578 (621)
..
T Consensus 136 ~~ 137 (189)
T 2x77_A 136 PD 137 (189)
T ss_dssp TT
T ss_pred cC
Confidence 63
No 414
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.80 E-value=0.013 Score=61.72 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.++.+-|..|+||||+...||..+...+.+|+++.+|+
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 47777789999999999999999988889999999998
No 415
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.80 E-value=0.0016 Score=62.07 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=23.9
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
..++.+|+|+|+.||||||+.+.|+..+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3456799999999999999999998654
No 416
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.78 E-value=0.0017 Score=68.77 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
..++|||++|||||||++.|.+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCC
Confidence 357999999999999999987653
No 417
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.78 E-value=0.0054 Score=70.63 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=45.7
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
.+.+.++||+|...-.....++|. ..|.+|+|.+++.|...... ..+....... ....+++||+|.
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~------~aD~aIlVvDa~~gv~~qt~-----~~~~~~~~~~---ip~ilviNKiD~ 146 (704)
T 2rdo_7 81 PHRINIIDTPGHVDFTIEVERSMR------VLDGAVMVYCAVGGVQPQSE-----TVWRQANKYK---VPRIAFVNKMDR 146 (704)
T ss_pred ceeEEEEeCCCccchHHHHHHHHH------HCCEEEEEEeCCCCCcHHHH-----HHHHHHHHcC---CCEEEEEeCCCc
Confidence 367889999997654333444443 46888888889888654432 2222222221 345789999998
Q ss_pred cccchhHHH
Q 007024 577 IDDKVGAAL 585 (621)
Q Consensus 577 ~~~~vG~~l 585 (621)
.....-.++
T Consensus 147 ~~~~~~~~~ 155 (704)
T 2rdo_7 147 MGANFLKVV 155 (704)
T ss_pred ccccHHHHH
Confidence 744443333
No 418
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.77 E-value=0.0012 Score=74.55 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=40.6
Q ss_pred CccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 499 DVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 499 d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
...++||+|...-.. +.. ......|.++||-+++.|..+.+. +.+..+.... ..-.+++||+|..
T Consensus 71 ~i~liDTPGhe~F~~-----~~~-r~~~~aD~aILVvDa~~Gv~~qT~-----e~l~~l~~~~---vPiIVViNKiDl~ 135 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTT-----LRK-RGGALADLAILIVDINEGFKPQTQ-----EALNILRMYR---TPFVVAANKIDRI 135 (594)
T ss_dssp EEEEECCCTTSCCTT-----SBC-SSSBSCSEEEEEEETTTCCCHHHH-----HHHHHHHHTT---CCEEEEEECGGGS
T ss_pred CEEEEECCCcHHHHH-----HHH-HHHhhCCEEEEEEECCCCccHhHH-----HHHHHHHHcC---CeEEEEecccccc
Confidence 467899999643211 110 112457999999999998876553 2333333322 3458999999986
No 419
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.77 E-value=0.0074 Score=64.15 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=35.0
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
++.|. ++.|.|++|+||||++..++......++.|+++..+.
T Consensus 71 l~~G~--li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGR--ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCc--EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34777 9999999999999999999987766777888877653
No 420
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.75 E-value=0.0074 Score=67.74 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
++++.+.|..|+||||+...||..+...+.+|+++.+|+
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 348999999999999999999999988888999999996
No 421
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=96.74 E-value=0.0021 Score=68.01 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=33.0
Q ss_pred EEEEE-ecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc
Q 007024 417 VVVFV-GVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (621)
Q Consensus 417 iiaLV-GpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~ 454 (621)
+|+|+ +.-|+||||+...||..+...+.+|+++.+|..
T Consensus 3 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q 41 (361)
T 3pg5_A 3 TISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQ 41 (361)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence 66666 566899999999999998888889999999984
No 422
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0068 Score=66.02 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=39.0
Q ss_pred cccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 402 ILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 402 iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
-|+.+.--+.+|+ ++.|.|++|+||||++..||......+..|++.....
T Consensus 186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 3444433456888 9999999999999999999976665577888887664
No 423
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.72 E-value=0.00053 Score=65.80 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=29.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~ 450 (621)
+|+|+|++||||||+++.|+..+...+..|.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 7999999999999999999999987777776543
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.70 E-value=0.0033 Score=63.82 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+.|+||+|+||||+++.|+..+...++.+...+|..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 7999999999999999999999887777666655544
No 425
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.69 E-value=0.00051 Score=77.61 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=39.5
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcC-cEEEEccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHK-VSVMMAAC 451 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~-GkV~I~~~ 451 (621)
.+++.+++.+..|+ .++|+||||+||||+++.|++++.+.. +.+.+.+.
T Consensus 48 ~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~ 97 (604)
T 3k1j_A 48 HAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPN 97 (604)
T ss_dssp HHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECC
T ss_pred hhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCC
Confidence 34556677777888 999999999999999999999988776 56666543
No 426
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.69 E-value=0.00018 Score=80.35 Aligned_cols=114 Identities=18% Similarity=0.168 Sum_probs=64.2
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
|.+++|+|..|+|||||++.|.+--..... .+.+.+. ++.... ..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~-----------~~giT~~------i~~~~v--~~---------------- 48 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAME-----------AGGITQH------IGAFLV--SL---------------- 48 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSS-----------SCCBCCC------TTSCCB--CS----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccc-----------CCceeEE------EeEEEE--Ee----------------
Confidence 448999999999999999999864322110 0000000 000000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..+..+.++||+|........ . ......|.++||.+++.|..+... +.+..+.... ..-.+++||+
T Consensus 49 ~~g~~i~~iDTPGhe~f~~~~-~-----~~~~~aD~vILVVDa~dg~~~qt~-----e~l~~~~~~~---vPiIVViNKi 114 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAFSAMR-A-----RGTQVTDIVILVVAADDGVMKQTV-----ESIQHAKDAH---VPIVLAINKC 114 (537)
T ss_dssp SCSSCCBCEECSSSCCTTTSB-B-----SSSBSBSSCEEECBSSSCCCHHHH-----HHHHHHHTTT---CCEEECCBSG
T ss_pred CCCCEEEEEECCChHHHHHHH-H-----HHHccCCEEEEEEECCCCccHHHH-----HHHHHHHHcC---CcEEEEEecc
Confidence 012356789999954321100 0 112557888888888888876553 3333333332 2357889999
Q ss_pred ccc
Q 007024 575 DTI 577 (621)
Q Consensus 575 De~ 577 (621)
|..
T Consensus 115 Dl~ 117 (537)
T 3izy_P 115 DKA 117 (537)
T ss_dssp GGT
T ss_pred ccc
Confidence 985
No 427
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.008 Score=58.52 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=32.7
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHh-HhhcCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYW-LLQHKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~-L~~~~GkV~I~~~Dt 453 (621)
+++|. ++.|.|++|+||||++..+|.. ....+..|++...+.
T Consensus 27 l~~G~--l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 27 FPEGT--TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EETTC--EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 45788 9999999999999999888754 444566787776553
No 428
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.00031 Score=73.18 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=30.9
Q ss_pred cccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcE
Q 007024 404 RDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVS 445 (621)
Q Consensus 404 ~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~Gk 445 (621)
+.++..+..|+...+.|+||+|+||||+++.|++.+.+..+.
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 334444556662238999999999999999999988765543
No 429
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.65 E-value=0.0022 Score=68.78 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=52.4
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC-CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl-D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
..+.++||+|...-. +.+.. ....+|.+|||.+++.|. .+... +.+ ..+..+. ...-.+++||+|.
T Consensus 83 ~~i~iiDtPGh~~f~----~~~~~--~~~~~D~~ilVvda~~g~~~~qt~-e~l-~~~~~~~-----~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALM----TTMLA--GASLMDGAILVIAANEPCPRPQTR-EHL-MALQIIG-----QKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHH----HHHHH--CGGGCSEEEEEEETTSCSSCHHHH-HHH-HHHHHHT-----CCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHH----HHHHh--hhhhCCEEEEEEECCCCCCChhHH-HHH-HHHHHcC-----CCcEEEEEECccC
Confidence 356789999965422 22221 124678998888888775 55433 122 2222221 1123677999998
Q ss_pred cccch-----hHHHHhHHH---hCCcEEEEe--cCCCCCc
Q 007024 577 IDDKV-----GAALSMVYV---SGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 577 ~~~~v-----G~~ls~~~~---~g~PI~fvg--~Gq~v~D 606 (621)
..... -.+..++.. .+.|+++++ +|+++++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~ 189 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDV 189 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHH
Confidence 73221 112222221 367888877 6666543
No 430
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.65 E-value=0.00095 Score=64.84 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.+.+|+||||+||||++..|...+-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4999999999999999999986543
No 431
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.63 E-value=0.0047 Score=69.87 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=57.1
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+.+.++||+|...-.....+.+. ..|.+|||.+++.|..+... ..+..++ ... ..-.+++||+|..
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~------~aD~aILVVDa~~gv~~qt~-~~~~~a~----~~~---ipiIvviNKiDl~ 138 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALA------ACEGALLLIDASQGIEAQTV-ANFWKAV----EQD---LVIIPVINKIDLP 138 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHH------TCSEEEEEEETTTBCCHHHH-HHHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCcHhHHHHHHHHHH------hCCEEEEEEECCCCccHHHH-HHHHHHH----HCC---CCEEEEEeccCcc
Confidence 45679999998765555555544 46888888889998876553 2222222 211 3368999999987
Q ss_pred ccchhH-HHHhHHHhCC---cEEEEe--cCCCCCc
Q 007024 578 DDKVGA-ALSMVYVSGA---PVMFVG--CGQSYTD 606 (621)
Q Consensus 578 ~~~vG~-~ls~~~~~g~---PI~fvg--~Gq~v~D 606 (621)
....-. .-.+....+. ++++++ +|.++.+
T Consensus 139 ~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~ 173 (600)
T 2ywe_A 139 SADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEE 173 (600)
T ss_dssp TCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHH
T ss_pred ccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchH
Confidence 433332 2233444465 366655 5555543
No 432
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.61 E-value=0.00063 Score=76.87 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
...|+|||..++|||||++.|.+..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~ 201 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFEL 201 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3479999999999999999997643
No 433
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.61 E-value=0.0032 Score=71.18 Aligned_cols=95 Identities=19% Similarity=0.152 Sum_probs=57.6
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEecccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDTI 577 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De~ 577 (621)
+...++||+|.........+.+. ..|.+|+|-+++.|....... .+..++ ... ..-.+++||+|..
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~------~aD~aILVVDa~~gv~~qt~~-~~~~~~----~~~---ipiIvViNKiDl~ 136 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLA------ACEGALLVVDAGQGVEAQTLA-NCYTAM----EMD---LEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHH------HCSEEEEEEETTTCCCTHHHH-HHHHHH----HTT---CEEEEEEECTTST
T ss_pred EEEEEEECCCchHHHHHHHHHHH------HCCEEEEEEECCCCCCHHHHH-HHHHHH----HCC---CCEEEeeeccCcc
Confidence 45679999998765555555544 358888888898888765532 222222 211 2458899999987
Q ss_pred ccchhH-HHHhHHHhCCc---EEEEe--cCCCCCc
Q 007024 578 DDKVGA-ALSMVYVSGAP---VMFVG--CGQSYTD 606 (621)
Q Consensus 578 ~~~vG~-~ls~~~~~g~P---I~fvg--~Gq~v~D 606 (621)
....-. .-.+....+.+ +++++ +|+++.+
T Consensus 137 ~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~ 171 (599)
T 3cb4_D 137 AADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQD 171 (599)
T ss_dssp TCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHH
T ss_pred cccHHHHHHHHHHHhCCCcceEEEeecccCCCchh
Confidence 433322 23344455664 66666 5665544
No 434
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.60 E-value=0.0071 Score=64.01 Aligned_cols=41 Identities=29% Similarity=0.292 Sum_probs=35.4
Q ss_pred CCceEEEEEe-cCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 413 RKPYVVVFVG-VNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 413 Gep~iiaLVG-pNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+.+++|+|+| ..|+||||+...||..+...+.+|+++++|.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3456999997 7789999999999998888888999999993
No 435
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.60 E-value=0.0032 Score=68.84 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=53.5
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCH-----HHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDA-----VDQLSKFNQKLADLSSSPNPQLIDGILL 571 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~-----~~q~~~f~~~L~~l~~~~~~~~it~IIl 571 (621)
+..+.++||+|.... ...+..- ....|.+|||.+++.|... ..|.. +.+..+.... ...-++++
T Consensus 84 ~~~~~iiDtPGh~~f-~~~~~~~-----~~~aD~~ilVvda~~g~~~~sf~~~~qt~---~~~~~~~~~~--v~~iivvi 152 (458)
T 1f60_A 84 KYQVTVIDAPGHRDF-IKNMITG-----TSQADCAILIIAGGVGEFEAGISKDGQTR---EHALLAFTLG--VRQLIVAV 152 (458)
T ss_dssp SEEEEEEECCCCTTH-HHHHHHS-----SSCCSEEEEEEECSHHHHHHHTCTTSHHH---HHHHHHHHTT--CCEEEEEE
T ss_pred CceEEEEECCCcHHH-HHHHHhh-----hhhCCEEEEEEeCCcCccccccCcchhHH---HHHHHHHHcC--CCeEEEEE
Confidence 346789999995432 2222222 2678999988887655311 00211 1121122111 11236789
Q ss_pred cccccccc-c--h----hHHHHhHHHhC-----CcEEEEe--cCCCCCccc
Q 007024 572 TKFDTIDD-K--V----GAALSMVYVSG-----APVMFVG--CGQSYTDLK 608 (621)
Q Consensus 572 TK~De~~~-~--v----G~~ls~~~~~g-----~PI~fvg--~Gq~v~DL~ 608 (621)
||+|.... . . -.+..++...+ .|++.++ +|+++.++.
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 99998721 1 1 12333344455 6888877 788886543
No 436
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.57 E-value=0.0014 Score=72.47 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=37.6
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.++.++++.++.| +.|+||||+||||+++.|++.+. .+-|.+.+.+.
T Consensus 54 ~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~ 100 (499)
T 2dhr_A 54 SRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF 100 (499)
T ss_dssp GGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred hhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence 4677787776554 89999999999999999999874 56777777664
No 437
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.55 E-value=0.0012 Score=63.19 Aligned_cols=21 Identities=29% Similarity=0.229 Sum_probs=20.4
Q ss_pred EEEEEecCCCCHHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg 437 (621)
+|+|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999998
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.54 E-value=0.0093 Score=62.94 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=34.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHh--hcCcEEEEccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~--~~~GkV~I~~~Dt 453 (621)
+++.+.|..|+||||+...||..+. ..+.+|+++.+|.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 4899999999999999999999888 7888999999995
No 439
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.53 E-value=0.0011 Score=63.79 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.|. +++|+||+||||||+++.|+..+.
T Consensus 11 ~~~--~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIP--PLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCC--CEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCC--EEEEECCCCCCHHHHHHHHHHhCc
Confidence 566 999999999999999999998763
No 440
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0015 Score=69.75 Aligned_cols=31 Identities=35% Similarity=0.300 Sum_probs=23.8
Q ss_pred ccccccCCceEEEEEecCCCCHHHHHHHHHH
Q 007024 407 HAAKEQRKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 407 s~~i~~Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
.|.+....-.-|+|||.+.||||||++.|++
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~ 94 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTG 94 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHS
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhC
Confidence 3444333334799999999999999999986
No 441
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.50 E-value=0.00036 Score=77.33 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=74.7
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHHHh
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQEAT 494 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~~~ 494 (621)
|.+++|+|+.|+|||||+..|.+--...+.. +.+.|. .+ .+. +.
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~-----------~GIT~~------i~--~~~-----------------v~ 47 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEA-----------GGITQH------IG--AYH-----------------VE 47 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTB-----------CCCCCC------SS--CCC-----------------CC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccC-----------CCeeEe------EE--EEE-----------------EE
Confidence 4589999999999999999987532211100 000000 00 000 00
Q ss_pred hcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 495 RNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 495 ~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
..+..+.++||+|........ .......|.++||.+++.|..+... +.+..+.... ..-.+++||+
T Consensus 48 ~~~~~i~~iDTPGhe~f~~~~------~~~~~~aD~aILVVda~~g~~~qT~-----e~l~~~~~~~---vPiIVviNKi 113 (501)
T 1zo1_I 48 TENGMITFLDTPGHAAFTSMR------ARGAQATDIVVLVVAADDGVMPQTI-----EAIQHAKAAQ---VPVVVAVNKI 113 (501)
T ss_dssp TTSSCCCEECCCTTTCCTTSB------CSSSBSCSSEEEEEETTTBSCTTTH-----HHHHHHHHTT---CCEEEEEECS
T ss_pred ECCEEEEEEECCCcHHHHHHH------HHHHhhCCEEEEEeecccCccHHHH-----HHHHHHHhcC---ceEEEEEEec
Confidence 123456789999964321111 0112567888887777776654432 2222222222 2358999999
Q ss_pred cccccchhHHHHh-------HHHhC--CcEEEEe--cCCCCCcc
Q 007024 575 DTIDDKVGAALSM-------VYVSG--APVMFVG--CGQSYTDL 607 (621)
Q Consensus 575 De~~~~vG~~ls~-------~~~~g--~PI~fvg--~Gq~v~DL 607 (621)
|......-.+... ....+ .|+++++ +|+++++|
T Consensus 114 Dl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 114 DKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp SSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred cccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence 9863211111110 11122 5777776 78887653
No 442
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.46 E-value=0.002 Score=61.39 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=29.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~ 450 (621)
..+.|.||+|+||||++..|+..+...+..+.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 48999999999999999999998877666665543
No 443
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.44 E-value=0.0016 Score=61.66 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.6
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHh
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
++++....+. +|+|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~--~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGI--NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSC--EEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCC--EEEEECCCCCCHHHHHHHHHHh
Confidence 3566655666 9999999999999999999876
No 444
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.44 E-value=0.0073 Score=63.17 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=26.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhc--CcEEEEccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQH--KVSVMMAAC 451 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~--~GkV~I~~~ 451 (621)
++.|.||+|+||||++-.++.-.... ++.++++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 78999999999999988777554443 666666543
No 445
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.43 E-value=0.012 Score=63.96 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~ 442 (621)
..+.|.||+|+||||+++.|+..+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 379999999999999999999887654
No 446
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.42 E-value=0.0054 Score=65.74 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=50.7
Q ss_pred CCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCC-CHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 498 SDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGN-DAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 498 ~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~Gl-D~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
..+.++||+|...- .+.+. ......|.+|||.+++.|. .+... +.+ ..+..+ . ...-.+++||+|.
T Consensus 81 ~~i~iiDtPGh~~f----~~~~~--~~~~~~D~~ilVvda~~g~~~~qt~-e~l-~~~~~l---~--~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETL----MATML--SGASLMDGAILVIAANEPCPQPQTK-EHL-MALEIL---G--IDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHH----HHHHH--TTCSCCSEEEEEEETTSCSSCHHHH-HHH-HHHHHT---T--CCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHH----HHHHH--HhHhhCCEEEEEEECCCCCCCchhH-HHH-HHHHHc---C--CCeEEEEEEccCC
Confidence 35788999996542 22222 1225679999988888775 55433 122 122211 1 1224689999998
Q ss_pred cccc-----hhHHHHhHHH---hCCcEEEEe--cCCCCCc
Q 007024 577 IDDK-----VGAALSMVYV---SGAPVMFVG--CGQSYTD 606 (621)
Q Consensus 577 ~~~~-----vG~~ls~~~~---~g~PI~fvg--~Gq~v~D 606 (621)
.+.. .-.+..++.. .+.|+++++ +|+++++
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~ 187 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDV 187 (408)
T ss_dssp SCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHH
Confidence 7422 1222333322 367888876 6766643
No 447
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.42 E-value=0.021 Score=60.27 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=34.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHh--hcCcEEEEccccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLL--QHKVSVMMAACDT 453 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~--~~~GkV~I~~~Dt 453 (621)
.++.+-|..|+||||+...||..+. ..+.+|+++.+|.
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3777778999999999999999888 7888999999997
No 448
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=96.41 E-value=0.026 Score=55.82 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=29.4
Q ss_pred EEEEEec-CCCCHHHHHHHHHHhHhhcCcEEEEc
Q 007024 417 VVVFVGV-NGVGKSTNLAKVAYWLLQHKVSVMMA 449 (621)
Q Consensus 417 iiaLVGp-NGvGKTTlLakLAg~L~~~~GkV~I~ 449 (621)
.+.|.|. +|+||||+...|+..+...+.+|...
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 6888998 79999999999999999888888764
No 449
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.35 E-value=0.0027 Score=59.40 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=27.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~ 449 (621)
+|+|+|+.||||||+.+.|+..+...+..+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 799999999999999999998887555444444
No 450
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.35 E-value=0.054 Score=67.71 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=35.9
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
+.+|+ ++.|.||+|+||||++..+|......+++|++....-
T Consensus 729 l~~G~--lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 729 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCc--eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 56788 9999999999999999999998887888887766543
No 451
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.34 E-value=0.0019 Score=59.82 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=26.8
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
|.+|+|+|++||||||+.+.|+.. ..|-+.+. .|.+|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~-~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK---NPGFYNIN-RDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH---STTEEEEC-HHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh---cCCcEEec-HHHHH
Confidence 458999999999999999999872 22334443 46554
No 452
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.28 E-value=0.0018 Score=68.63 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.4
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.+++.+.+|+...++|+|++|+||||+.+.|++.+.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344455567755699999999999999999998654
No 453
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0023 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
+|+|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987653
No 454
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.28 E-value=0.0099 Score=71.62 Aligned_cols=150 Identities=16% Similarity=0.075 Sum_probs=75.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEE--EcccccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM--MAACDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAIQE 492 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~--I~~~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al~~ 492 (621)
...|+|+|..|+|||||+..|.+.....+.... ....|. +. .-...++.+.... + .
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~--------~~-~ErerGITIdva~------------v-~ 353 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDN--------AP-EEKARGITINTSH------------V-E 353 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC------------------------------CCSC------------E-E
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhcccccccccccccccc--------cc-ccccCceeEEEEE------------E-E
Confidence 357999999999999999999875432221110 000110 00 0000111110000 0 0
Q ss_pred HhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 007024 493 ATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLT 572 (621)
Q Consensus 493 ~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlT 572 (621)
+...+..+.++||+|...-. ..+..- ....|.+|||.+++.|..+... +.+ ..+..+ . +..-++++|
T Consensus 354 f~~~~~kI~IIDTPGHedF~-~~mi~g-----as~AD~aILVVDAtdGv~~QTr-EhL-~ll~~l---g--IP~IIVVIN 420 (1289)
T 3avx_A 354 YDTPTRHYAHVDCPGHADYV-KNMITG-----AAQMDGAILVVAATDGPMPQTR-EHI-LLGRQV---G--VPYIIVFLN 420 (1289)
T ss_dssp EECSSCEEEEEECCCHHHHH-HHHHHT-----SCCCSEEEEEEETTTCSCTTHH-HHH-HHHHHH---T--CSCEEEEEE
T ss_pred EcCCCEEEEEEECCChHHHH-HHHHHH-----HhhCCEEEEEEcCCccCcHHHH-HHH-HHHHHc---C--CCeEEEEEe
Confidence 01123567899999976532 222222 2678999998888888654432 122 222221 1 111267899
Q ss_pred cccccccc-h-----hHHHHhHHHhC-----CcEEEEe
Q 007024 573 KFDTIDDK-V-----GAALSMVYVSG-----APVMFVG 599 (621)
Q Consensus 573 K~De~~~~-v-----G~~ls~~~~~g-----~PI~fvg 599 (621)
|+|...+. . -.+..++...+ .|+++++
T Consensus 421 KiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvS 458 (1289)
T 3avx_A 421 KCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGS 458 (1289)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECC
T ss_pred ecccccchhhHHHHHHHHHHHHHhccccccceeEEEEE
Confidence 99987321 1 12333455555 5888776
No 455
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.25 E-value=0.0025 Score=59.58 Aligned_cols=28 Identities=36% Similarity=0.360 Sum_probs=24.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcC
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHK 443 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~ 443 (621)
.+|+|+|++||||||+.+.|+..+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998776443
No 456
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.25 E-value=0.0078 Score=63.67 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=42.8
Q ss_pred ccccchhHHhHHHH------HHHHHhhhhcCC-CcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccc
Q 007024 502 LVDTAGRMQDNEPL------MRALSKLIYLNN-PDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKF 574 (621)
Q Consensus 502 liDtSGg~qqr~~L------araL~~l~~~~~-PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~ 574 (621)
+..+|||+++++.| +++|. .+ |+++|| |||++|+|+..+. .+.+.|..+.. ..+++++|.-
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~-----~~~~~~lll-DEp~~~LD~~~~~-~l~~~l~~~~~-----~~~vi~~th~ 345 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALI-----GNRVECIIL-DEPTVYLDENRRA-KLAEIFRKVKS-----IPQMIIITHH 345 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHH-----SSCCSEEEE-ESTTTTCCHHHHH-HHHHHHHHCCS-----CSEEEEEESC
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEE-eCCCCcCCHHHHH-HHHHHHHHhcc-----CCeEEEEECh
Confidence 45689999998855 45555 77 999888 9999999998864 44455555432 2356676653
No 457
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.22 E-value=0.0058 Score=66.90 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
...++++|..++|||||+..|.+
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHH
T ss_pred eeEEEEEECCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 458
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.22 E-value=0.032 Score=61.27 Aligned_cols=51 Identities=16% Similarity=0.061 Sum_probs=38.1
Q ss_pred ccccccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc-CcEEEEccccc
Q 007024 401 DILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-KVSVMMAACDT 453 (621)
Q Consensus 401 ~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-~GkV~I~~~Dt 453 (621)
.-|+.+.--+.+|+ ++.|.|++|+||||++..+|...... +..|++.+.+.
T Consensus 230 ~~LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 230 TGINDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTHHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred hhhhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 33444332356888 99999999999999999999766554 66888877654
No 459
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.20 E-value=0.0036 Score=60.31 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=31.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccccc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDT 453 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt 453 (621)
.+.|+||+|+||||+++.|+..+...+..+.+..+..
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 8999999999999999999998877666666665543
No 460
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.19 E-value=0.003 Score=59.32 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
|.+|+|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4599999999999999999999766
No 461
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.18 E-value=0.0028 Score=59.35 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+|+|+|++||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998765
No 462
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.17 E-value=0.009 Score=64.37 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=7.2
Q ss_pred cCCCccccccch
Q 007024 496 NGSDVVLVDTAG 507 (621)
Q Consensus 496 ~~~d~vliDtSG 507 (621)
....+.+.|=+-
T Consensus 354 ~~~~~lllDEp~ 365 (430)
T 1w1w_A 354 QPSPFFVLDEVD 365 (430)
T ss_dssp SCCSEEEESSTT
T ss_pred CCCCEEEeCCCc
Confidence 345677777543
No 463
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.17 E-value=0.0022 Score=60.78 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHHh
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
++|.+|+|+|++||||||+.+.|+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 464
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0088 Score=59.28 Aligned_cols=36 Identities=17% Similarity=0.084 Sum_probs=31.8
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMA 449 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~ 449 (621)
+|. ++.+.|+.|+||||++-.++..+...+.+|++.
T Consensus 11 ~G~--i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGW--IEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCE--EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcE--EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 465 999999999999999999998888788888887
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.06 E-value=0.0032 Score=62.19 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=31.2
Q ss_pred CceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccce
Q 007024 414 KPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFR 455 (621)
Q Consensus 414 ep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~R 455 (621)
+|++|.|+||+||||+|....|+..+ |-+.|...|++|
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~----g~~hIstGdllR 65 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF----HFNHLSSGDLLR 65 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH----CCEEECHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEcHHHHHH
Confidence 45699999999999999999998765 445677778776
No 466
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.04 E-value=0.013 Score=74.00 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=34.4
Q ss_pred cccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccc
Q 007024 410 KEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACD 452 (621)
Q Consensus 410 i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~D 452 (621)
+++|+ ++.|+||+|+|||||...++.-....++++.+....
T Consensus 1424 i~~g~--~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1424 LPMGR--IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EETTS--EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCe--EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 44676 999999999999999999988777778888877654
No 467
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.03 E-value=0.0039 Score=58.39 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
|.+|+|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998655
No 468
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.03 E-value=0.009 Score=66.81 Aligned_cols=85 Identities=19% Similarity=0.087 Sum_probs=56.3
Q ss_pred CCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEEeccccc
Q 007024 497 GSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGILLTKFDT 576 (621)
Q Consensus 497 ~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~IIlTK~De 576 (621)
++...||||+|-.---....|+|. -.|-.++|.++..|..+... ..+ +...+.. ....++++|+|.
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~------~~DgAvlVvda~~GV~~qT~-~v~----~~a~~~~---lp~i~fINK~Dr 164 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLT------AVDSALVVIDAAKGVEAQTR-KLM----DVCRMRA---TPVMTFVNKMDR 164 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHH------SCSEEEEEEETTTBSCHHHH-HHH----HHHHHTT---CCEEEEEECTTS
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHH------hcCceEEEeecCCCcccccH-HHH----HHHHHhC---CceEEEEecccc
Confidence 456789999998877677777777 34777777889999988764 223 2222222 345789999998
Q ss_pred cccchhHHHH-hHHHhCCcE
Q 007024 577 IDDKVGAALS-MVYVSGAPV 595 (621)
Q Consensus 577 ~~~~vG~~ls-~~~~~g~PI 595 (621)
.....-.++. +-...+..+
T Consensus 165 ~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 165 EALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp CCCCHHHHHHHHHHHHTSEE
T ss_pred hhcchhHhhhhhhhhcCCce
Confidence 7555554444 444455544
No 469
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.00 E-value=0.0034 Score=58.34 Aligned_cols=25 Identities=20% Similarity=0.212 Sum_probs=22.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
.+|.|+|++||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999987663
No 470
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.00 E-value=0.0052 Score=58.40 Aligned_cols=30 Identities=27% Similarity=0.627 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEE
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV 446 (621)
.+|+|+|+.||||||+.+.|+..+...+ .+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 4899999999999999999998776544 44
No 471
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.99 E-value=0.0055 Score=57.71 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=26.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEE
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVM 447 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~ 447 (621)
+|+|.|+.||||||+++.|+..+...+..|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 7899999999999999999998876666664
No 472
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.0039 Score=58.95 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=22.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHh
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLL 440 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~ 440 (621)
+|+|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 473
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.93 E-value=0.0047 Score=65.58 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=30.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA 450 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~ 450 (621)
.++|+||+|+||||+++.|+..+...+++|.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 7899999999999999999988888888888764
No 474
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.93 E-value=0.006 Score=58.25 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEE
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV 446 (621)
.+|+|+|+.||||||+.+.|+..+...+..|
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4999999999999999999998876555444
No 475
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.90 E-value=0.012 Score=61.61 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.5
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHh
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
.+|. ++.|.||+|+||||+...++..
T Consensus 121 ~~gs--viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASG--MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESE--EEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCc--EEEEEcCCCCCHHHHHHHHHHh
Confidence 3565 8899999999999999999865
No 476
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.90 E-value=0.013 Score=62.56 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=32.9
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEccc
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAAC 451 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~ 451 (621)
+++.+.|..|+||||+...||..+...+.+|+++++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 488899999999999999999999888889999887
No 477
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.89 E-value=0.0018 Score=71.82 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=30.0
Q ss_pred cccccccccccccCCceEEEEEecCCCCHHHHHHHHHHh
Q 007024 400 IDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYW 438 (621)
Q Consensus 400 ~~iL~dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~ 438 (621)
+..++++++.+.+| +.+|+|+||+||||+|..|.++
T Consensus 48 f~~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 48 LATITQLELELGGG---FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp BTTBSCEEEECCCS---EEEEEESHHHHHHHHTHHHHHH
T ss_pred ccceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHHHH
Confidence 44566777777665 9999999999999999999876
No 478
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.89 E-value=0.0048 Score=58.04 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+|+|+|+.||||||+.+.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 499999999999999999998765
No 479
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.86 E-value=0.0061 Score=60.67 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=29.8
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHHhHhhc-----CcEEEEccccc
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH-----KVSVMMAACDT 453 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~-----~GkV~I~~~Dt 453 (621)
.+.|.+|+|.|+.||||||+.+.|+..+... +.++.+...|-
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 3457799999999999999999998755321 33455555554
No 480
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.85 E-value=0.0051 Score=58.03 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.1
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+|+|+|+.||||||+.+.|+..+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 399999999999999999999766
No 481
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.83 E-value=0.028 Score=61.67 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred ccCCceEEEEEecCCCCHHHHHHHHHHhHhhcCc
Q 007024 411 EQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKV 444 (621)
Q Consensus 411 ~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~G 444 (621)
-+|+ .++|+|++|+|||||++.|+.......+
T Consensus 149 ~kGq--~~~i~G~sGvGKTtL~~~l~~~~~~~~~ 180 (473)
T 1sky_E 149 IKGG--KIGLFGGAGVGKTVLIQELIHNIAQEHG 180 (473)
T ss_dssp ETTC--EEEEECCSSSCHHHHHHHHHHHHHHHTC
T ss_pred ccCC--EEEEECCCCCCccHHHHHHHhhhhhccC
Confidence 3677 8999999999999999999987664433
No 482
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.83 E-value=0.0089 Score=57.08 Aligned_cols=162 Identities=19% Similarity=0.197 Sum_probs=81.0
Q ss_pred CCceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcc--cccceeeeeehhhhhhhhcccceeecCCCCCHHHHHHHHH
Q 007024 413 RKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAA--CDTFRSGAVEQLRTHARRLQVPIFEKGYEKDPAIVAKEAI 490 (621)
Q Consensus 413 Gep~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~--~Dt~RigaveQl~~~~~~L~v~l~~~~~~~d~~~ia~~al 490 (621)
|. ++.++||.|+||||++..++..+...+.+|.+.. .|. |.|. .+...+ +++....... .+. .+++
T Consensus 3 g~--i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~-~~i~s~---~g~~~~~~~~-~~~----~~~~ 70 (184)
T 2orw_A 3 GK--LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHS-TMIVSH---SGNGVEAHVI-ERP----EEMR 70 (184)
T ss_dssp CC--EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CC-CEECC-------CEECEEE-SSG----GGGG
T ss_pred cE--EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCc-ccEEec---CCCceeeEEE-CCH----HHHH
Confidence 55 9999999999999999888877766677887753 232 3221 122111 1221110000 011 1111
Q ss_pred HHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEE-EeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEE
Q 007024 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLF-VGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGI 569 (621)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILL-VDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~I 569 (621)
+.+. .+++++++|-+..... .+...|..+... +-++++. .+..+.+. +.... ..|..+++
T Consensus 71 ~~~~-~~~dvviIDE~Q~~~~--~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~-~f~~~----~~ll~~ad---------- 131 (184)
T 2orw_A 71 KYIE-EDTRGVFIDEVQFFNP--SLFEVVKDLLDR-GIDVFCAGLDLTHKQN-PFETT----ALLLSLAD---------- 131 (184)
T ss_dssp GGCC-TTEEEEEECCGGGSCT--THHHHHHHHHHT-TCEEEEEEESBCTTSC-BCHHH----HHHHHHCS----------
T ss_pred HHhc-CCCCEEEEECcccCCH--HHHHHHHHHHHC-CCCEEEEeeccccccC-Cccch----HHHHHHhh----------
Confidence 1111 2467899998876521 133333333332 3344433 11111111 11111 11222221
Q ss_pred Eeccccccccchh---HHHHhHHHhCCcEEEEecCCCCC
Q 007024 570 LLTKFDTIDDKVG---AALSMVYVSGAPVMFVGCGQSYT 605 (621)
Q Consensus 570 IlTK~De~~~~vG---~~ls~~~~~g~PI~fvg~Gq~v~ 605 (621)
.++|+..++...| +..+.....+.|+++||.++.|.
T Consensus 132 ~v~~l~~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~ 170 (184)
T 2orw_A 132 TVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYI 170 (184)
T ss_dssp EEEECCBCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEE
T ss_pred heEEeeeecCCCCCeeceeEEEEcCCCCEEEECCCCcEE
Confidence 2488888865677 55555555688999999888874
No 483
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.82 E-value=0.0056 Score=57.15 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+.+|+|+|+.||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999998765
No 484
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.81 E-value=0.0043 Score=56.61 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=18.2
Q ss_pred EEEEEecCCCCHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKV 435 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakL 435 (621)
+|+|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999988
No 485
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.80 E-value=0.0074 Score=57.59 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.8
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhhcCcEE
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV 446 (621)
.+|+|+|+.||||||+.+.|+..+...+..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4999999999999999999998776544444
No 486
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.78 E-value=0.012 Score=57.88 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.0
Q ss_pred cCCceEEEEEecCCCCHHHHHHHHHH
Q 007024 412 QRKPYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 412 ~Gep~iiaLVGpNGvGKTTlLakLAg 437 (621)
.|+ .++++|||||||||++..+..
T Consensus 75 ~g~--~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 75 QNS--VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HCS--EEEEECCTTSSHHHHHHHHHH
T ss_pred cCC--EEEEEeCCCCCcHHhHHHHHh
Confidence 567 999999999999999887764
No 487
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.77 E-value=0.0052 Score=59.37 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg 437 (621)
|.+|+|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45999999999999999999987
No 488
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.77 E-value=0.0055 Score=57.36 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+|+|+|++||||||+.+.|+..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.76 E-value=0.0042 Score=66.61 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=31.1
Q ss_pred ccccccccCCceEEEEEecCCCCHHHHHHHHHHhHhhc
Q 007024 405 DVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (621)
Q Consensus 405 dIs~~i~~Gep~iiaLVGpNGvGKTTlLakLAg~L~~~ 442 (621)
|+.+.+.+|+ .++|+||+|+||||+++.|+.++..+
T Consensus 166 D~~~pi~rGQ--r~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 166 DLASPIGRGQ--RGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp HHHSCCBTTC--EEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred eeeeeecCCc--EEEEecCCCCChhHHHHHHHHHHhhc
Confidence 4556677898 99999999999999999999987654
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.76 E-value=0.0036 Score=64.28 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.0
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTF 454 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~ 454 (621)
+.+|+|.||.||||||+.+.|+..+...+.++.+...|-|
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4599999999999999999999877655555666666653
No 491
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.74 E-value=0.0055 Score=61.40 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=21.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+++|+||+||||||+.+.||..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 79999999999999999999865
No 492
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.70 E-value=0.0051 Score=65.13 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.7
Q ss_pred eEEEEEecCCCCHHHHHHHHHH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAY 437 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg 437 (621)
++.+|+|+||+||||+|-.|+.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999999986
No 493
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.67 E-value=0.0061 Score=60.87 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
|.+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999765
No 494
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.66 E-value=0.0077 Score=62.28 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhHhhc
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWLLQH 442 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L~~~ 442 (621)
+..++|+||+|+||||+++.++..+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999988765
No 495
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.65 E-value=0.0054 Score=57.17 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+|+|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999765
No 496
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.63 E-value=0.0072 Score=59.44 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCCHHHHHHHHHHhH
Q 007024 415 PYVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 415 p~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
+.+|+|+|++||||||+.+.|+..+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999999855
No 497
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.62 E-value=0.013 Score=66.81 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=82.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEEEEcccccceeeeeehhhhhhhhc------ccceeecCCCCCHHHHHHHHH
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRL------QVPIFEKGYEKDPAIVAKEAI 490 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV~I~~~Dt~RigaveQl~~~~~~L------~v~l~~~~~~~d~~~ia~~al 490 (621)
-|+|+|.-++|||||.-.|...--. +.+.|.+++-.++.+.+ ++.+......
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~-----------i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~----------- 61 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGA-----------ITELGSVDKGTTRTDNTLLERQRGITIQTGITS----------- 61 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTC-----------CSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCC-----------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC-----------CccccccccCCcccCCcHHHHhCCCcEEeeeEE-----------
Confidence 5899999999999999988643311 11222222211122211 2222111000
Q ss_pred HHHhhcCCCccccccchhHHhHHHHHHHHHhhhhcCCCcEEEEEeCCcCCCCHHHHHHHHHHHHHHhhcCCCCCCceEEE
Q 007024 491 QEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSSSPNPQLIDGIL 570 (621)
Q Consensus 491 ~~~~~~~~d~vliDtSGg~qqr~~LaraL~~l~~~~~PdlILLVDEpt~GlD~~~q~~~f~~~L~~l~~~~~~~~it~II 570 (621)
+...++...+|||+|-.---....++|. -.|-.++|.++..|..+... ..+ +...... ....++
T Consensus 62 --~~~~~~~iNlIDTPGH~DF~~Ev~raL~------~~DgavlVVDa~~GV~~qT~-~v~----~~a~~~~---lp~i~~ 125 (638)
T 3j25_A 62 --FQWENTKVNIIDTPGHMDFLAEVYRSLS------VLDGAILLISAKDGVQAQTR-ILF----HALRKMG---IPTIFF 125 (638)
T ss_dssp --CBCSSCBCCCEECCCSSSTHHHHHHHHT------TCSEEECCEESSCTTCSHHH-HHH----HHHHHHT---CSCEEC
T ss_pred --EEECCEEEEEEECCCcHHHHHHHHHHHH------HhCEEEEEEeCCCCCcHHHH-HHH----HHHHHcC---CCeEEE
Confidence 1123566789999998766666667775 35778888889999987653 223 2222222 234789
Q ss_pred eccccccccchhHHH-HhHHHhCCcEEEE
Q 007024 571 LTKFDTIDDKVGAAL-SMVYVSGAPVMFV 598 (621)
Q Consensus 571 lTK~De~~~~vG~~l-s~~~~~g~PI~fv 598 (621)
++|+|......-..+ .+-...+.++++.
T Consensus 126 INKmDr~~a~~~~~~~~i~~~l~~~~~~~ 154 (638)
T 3j25_A 126 INKIDQNGIDLSTVYQDIKEKLSAEIVIK 154 (638)
T ss_dssp CEECCSSSCCSHHHHHHHHHTTCCCCCCC
T ss_pred EeccccccCCHHHHHHHHHHHhCCCcccc
Confidence 999998755544433 4444556655443
No 498
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.60 E-value=0.0087 Score=56.00 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=25.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhHhhcCcEE
Q 007024 417 VVVFVGVNGVGKSTNLAKVAYWLLQHKVSV 446 (621)
Q Consensus 417 iiaLVGpNGvGKTTlLakLAg~L~~~~GkV 446 (621)
+|+|+|+.||||||+.+.|+..+...+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 789999999999999999998886555444
No 499
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.59 E-value=0.011 Score=54.19 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhHhh
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWLLQ 441 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L~~ 441 (621)
..+.|+||.|+||||+++.++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987654
No 500
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.58 E-value=0.0059 Score=57.89 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=22.3
Q ss_pred eEEEEEecCCCCHHHHHHHHHHhH
Q 007024 416 YVVVFVGVNGVGKSTNLAKVAYWL 439 (621)
Q Consensus 416 ~iiaLVGpNGvGKTTlLakLAg~L 439 (621)
.+|+|+|+.||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999876
Done!