Query 007027
Match_columns 621
No_of_seqs 95 out of 105
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 17:53:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1003 Actin filament-coating 100.0 5E-34 1.1E-38 276.4 19.7 188 367-575 2-199 (205)
2 PF00261 Tropomyosin: Tropomyo 100.0 1.2E-28 2.6E-33 243.4 21.3 214 341-575 1-231 (237)
3 PF12718 Tropomyosin_1: Tropom 99.2 3.3E-10 7.1E-15 106.2 13.9 107 332-438 33-142 (143)
4 PF00261 Tropomyosin: Tropomyo 99.2 8E-10 1.7E-14 110.0 16.5 216 289-522 2-231 (237)
5 PRK02224 chromosome segregatio 99.0 3.8E-05 8.3E-10 88.3 48.2 44 229-272 262-305 (880)
6 PRK02224 chromosome segregatio 99.0 1.6E-05 3.4E-10 91.4 42.8 186 335-528 510-700 (880)
7 TIGR02169 SMC_prok_A chromosom 98.7 0.00014 3E-09 84.5 39.6 54 209-262 151-207 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.7 4.2E-05 9.2E-10 88.2 33.6 54 501-558 964-1017(1179)
9 COG1196 Smc Chromosome segrega 98.7 3.2E-05 7E-10 92.5 33.3 76 507-582 947-1026(1163)
10 TIGR02169 SMC_prok_A chromosom 98.6 0.0004 8.7E-09 80.8 39.4 16 499-514 955-970 (1164)
11 TIGR00606 rad50 rad50. This fa 98.6 0.0013 2.9E-08 79.9 44.6 70 106-182 597-666 (1311)
12 TIGR02168 SMC_prok_B chromosom 98.6 0.00028 6.1E-09 81.5 37.0 57 498-554 968-1027(1179)
13 TIGR00606 rad50 rad50. This fa 98.4 0.018 4E-07 70.3 46.6 55 244-298 575-629 (1311)
14 KOG0161 Myosin class II heavy 98.3 0.018 3.8E-07 72.7 44.3 333 229-574 961-1327(1930)
15 KOG0161 Myosin class II heavy 98.3 0.0033 7.2E-08 78.9 37.8 133 428-567 1065-1208(1930)
16 COG1196 Smc Chromosome segrega 98.3 0.0041 8.8E-08 75.0 37.1 50 479-528 947-996 (1163)
17 KOG0971 Microtubule-associated 98.2 0.0023 4.9E-08 75.0 31.6 277 297-573 219-557 (1243)
18 PRK03918 chromosome segregatio 98.1 0.039 8.4E-07 63.8 45.6 35 459-493 548-582 (880)
19 KOG4674 Uncharacterized conser 98.1 0.045 9.8E-07 68.6 39.7 294 225-560 654-984 (1822)
20 PHA02562 46 endonuclease subun 98.0 0.01 2.2E-07 64.9 30.8 127 424-550 298-433 (562)
21 PRK04863 mukB cell division pr 98.0 0.017 3.6E-07 71.8 35.1 62 204-265 272-333 (1486)
22 PF12718 Tropomyosin_1: Tropom 97.9 0.00075 1.6E-08 63.8 16.5 139 378-566 2-140 (143)
23 KOG4674 Uncharacterized conser 97.9 0.19 4E-06 63.5 41.5 292 217-528 691-1030(1822)
24 KOG0994 Extracellular matrix g 97.8 0.026 5.7E-07 67.8 31.1 254 258-565 1494-1748(1758)
25 KOG0976 Rho/Rac1-interacting s 97.8 0.027 5.8E-07 65.8 30.0 304 260-574 34-356 (1265)
26 KOG1003 Actin filament-coating 97.8 0.0046 9.9E-08 62.0 21.2 184 333-519 3-196 (205)
27 PF05701 WEMBL: Weak chloropla 97.7 0.13 2.8E-06 57.6 35.9 330 228-572 58-424 (522)
28 PRK03918 chromosome segregatio 97.7 0.16 3.6E-06 58.7 47.4 8 74-81 134-141 (880)
29 PF07888 CALCOCO1: Calcium bin 97.6 0.2 4.4E-06 56.8 34.9 107 370-483 277-387 (546)
30 PF07888 CALCOCO1: Calcium bin 97.4 0.3 6.5E-06 55.6 31.1 47 430-476 281-327 (546)
31 PRK01156 chromosome segregatio 97.4 0.46 9.9E-06 55.8 44.7 26 146-171 195-220 (895)
32 KOG0996 Structural maintenance 97.4 0.6 1.3E-05 57.0 34.5 313 247-581 289-619 (1293)
33 PRK11637 AmiB activator; Provi 97.4 0.21 4.5E-06 54.2 28.5 104 305-419 43-148 (428)
34 PF10174 Cast: RIM-binding pro 97.3 0.6 1.3E-05 55.2 40.5 201 324-531 228-451 (775)
35 KOG0971 Microtubule-associated 97.2 0.53 1.1E-05 56.2 29.9 299 229-562 235-553 (1243)
36 PF12128 DUF3584: Protein of u 97.1 1.2 2.7E-05 54.5 40.5 233 210-445 415-705 (1201)
37 KOG0996 Structural maintenance 97.1 0.38 8.2E-06 58.6 28.2 198 289-521 385-596 (1293)
38 PF10174 Cast: RIM-binding pro 97.0 1.1 2.5E-05 53.0 43.2 361 148-560 183-581 (775)
39 KOG0933 Structural maintenance 97.0 1.4 3E-05 53.4 40.2 67 233-299 407-473 (1174)
40 KOG0250 DNA repair protein RAD 97.0 1.1 2.4E-05 54.4 30.8 38 562-599 531-570 (1074)
41 PF01576 Myosin_tail_1: Myosin 96.9 0.00025 5.4E-09 83.1 0.0 180 338-530 571-771 (859)
42 PF00038 Filament: Intermediat 96.8 0.75 1.6E-05 47.3 27.9 70 499-568 213-289 (312)
43 KOG0933 Structural maintenance 96.7 2.5 5.3E-05 51.4 33.5 279 199-523 148-469 (1174)
44 PRK01156 chromosome segregatio 96.7 2.1 4.6E-05 50.4 35.3 29 154-182 415-443 (895)
45 PF09726 Macoilin: Transmembra 96.6 0.23 5E-06 57.9 21.5 219 216-478 419-654 (697)
46 PRK04863 mukB cell division pr 96.6 3.5 7.6E-05 52.2 38.0 39 536-574 553-591 (1486)
47 PRK04778 septation ring format 96.5 2 4.4E-05 48.7 37.8 128 333-466 255-385 (569)
48 PF05701 WEMBL: Weak chloropla 96.5 2.1 4.6E-05 48.2 38.0 217 208-453 197-414 (522)
49 KOG0994 Extracellular matrix g 96.5 3.5 7.7E-05 50.8 30.7 263 213-491 1469-1734(1758)
50 KOG0995 Centromere-associated 96.4 2.6 5.6E-05 48.4 33.3 317 223-560 204-547 (581)
51 PRK11637 AmiB activator; Provi 96.4 1.8 3.9E-05 47.1 25.4 34 528-561 220-253 (428)
52 PHA02562 46 endonuclease subun 96.3 1.6 3.5E-05 48.1 24.5 36 147-182 173-208 (562)
53 KOG0250 DNA repair protein RAD 96.3 4.2 9.2E-05 49.7 29.7 34 529-562 431-464 (1074)
54 KOG0977 Nuclear envelope prote 96.3 2.1 4.5E-05 49.0 25.5 87 333-419 119-219 (546)
55 PF05557 MAD: Mitotic checkpoi 96.2 0.0013 2.8E-08 75.4 0.0 145 371-515 225-426 (722)
56 PF12128 DUF3584: Protein of u 96.1 5.4 0.00012 49.2 44.0 140 429-575 604-759 (1201)
57 PF09726 Macoilin: Transmembra 96.0 2.5 5.5E-05 49.6 25.4 58 499-556 591-651 (697)
58 KOG0612 Rho-associated, coiled 95.9 5.5 0.00012 49.3 27.9 90 341-434 508-597 (1317)
59 KOG0978 E3 ubiquitin ligase in 95.7 6.1 0.00013 46.6 35.2 225 272-522 376-614 (698)
60 PF06008 Laminin_I: Laminin Do 95.6 3.2 7E-05 42.4 22.7 208 229-448 49-257 (264)
61 PF01576 Myosin_tail_1: Myosin 95.5 0.0035 7.6E-08 73.7 0.0 108 345-452 289-404 (859)
62 KOG0977 Nuclear envelope prote 95.4 3.4 7.3E-05 47.4 22.6 302 146-512 47-387 (546)
63 KOG0946 ER-Golgi vesicle-tethe 95.1 4.4 9.5E-05 48.4 22.7 106 280-392 645-760 (970)
64 KOG0946 ER-Golgi vesicle-tethe 95.0 1.5 3.2E-05 52.2 18.6 107 368-474 691-800 (970)
65 PF06160 EzrA: Septation ring 94.8 9.3 0.0002 43.6 36.8 132 333-470 251-385 (560)
66 PF12777 MT: Microtubule-bindi 94.7 4.1 9E-05 43.4 19.8 96 469-571 216-314 (344)
67 TIGR03185 DNA_S_dndD DNA sulfu 94.4 12 0.00026 43.1 26.0 40 142-181 210-249 (650)
68 PRK04778 septation ring format 94.3 12 0.00027 42.5 35.5 241 268-526 99-365 (569)
69 PF05911 DUF869: Plant protein 94.0 17 0.00036 43.6 24.3 74 426-516 681-761 (769)
70 PF10473 CENP-F_leu_zip: Leuci 93.8 4.8 0.0001 38.8 16.3 93 326-419 10-102 (140)
71 COG1579 Zn-ribbon protein, pos 93.7 10 0.00022 39.6 19.9 64 336-399 19-82 (239)
72 COG1579 Zn-ribbon protein, pos 93.5 2.8 6.2E-05 43.5 15.3 132 289-438 11-144 (239)
73 KOG0995 Centromere-associated 93.5 18 0.00039 41.9 30.0 87 255-357 195-282 (581)
74 TIGR03007 pepcterm_ChnLen poly 93.5 6.2 0.00014 43.3 18.9 34 543-576 350-383 (498)
75 PLN02939 transferase, transfer 93.4 14 0.0003 45.2 22.6 156 337-528 166-350 (977)
76 PF05667 DUF812: Protein of un 93.2 21 0.00046 41.5 24.1 76 499-574 444-531 (594)
77 PRK09039 hypothetical protein; 93.1 15 0.00032 39.6 20.5 72 459-546 136-207 (343)
78 PF05010 TACC: Transforming ac 92.9 12 0.00026 38.1 22.3 193 372-574 5-201 (207)
79 PRK11281 hypothetical protein; 92.9 6.7 0.00015 48.5 19.4 32 491-522 281-312 (1113)
80 PF10168 Nup88: Nuclear pore c 92.8 1.2 2.5E-05 52.4 12.5 139 431-576 575-713 (717)
81 PRK09039 hypothetical protein; 92.8 6.5 0.00014 42.3 17.2 15 578-592 261-275 (343)
82 KOG0018 Structural maintenance 92.7 32 0.0007 42.6 27.2 220 335-581 677-910 (1141)
83 PF14915 CCDC144C: CCDC144C pr 92.7 17 0.00036 39.2 26.9 135 424-575 157-291 (305)
84 PF00038 Filament: Intermediat 92.7 14 0.0003 38.1 32.4 56 499-554 227-282 (312)
85 PF05483 SCP-1: Synaptonemal c 92.5 28 0.00061 41.3 34.3 123 369-534 349-475 (786)
86 PF14073 Cep57_CLD: Centrosome 92.1 7.6 0.00017 38.9 15.5 145 336-522 6-154 (178)
87 PRK10929 putative mechanosensi 91.6 43 0.00094 41.8 24.1 29 493-521 263-291 (1109)
88 PF14915 CCDC144C: CCDC144C pr 91.5 23 0.0005 38.2 22.7 149 244-404 75-228 (305)
89 TIGR01005 eps_transp_fam exopo 91.5 29 0.00062 40.5 21.6 71 367-450 192-262 (754)
90 PF05557 MAD: Mitotic checkpoi 91.3 0.058 1.3E-06 62.2 0.0 21 492-512 261-281 (722)
91 TIGR00634 recN DNA repair prot 91.2 30 0.00064 39.4 21.0 9 589-597 420-428 (563)
92 PF05622 HOOK: HOOK protein; 91.2 0.097 2.1E-06 60.4 1.6 118 370-509 240-360 (713)
93 PF08317 Spc7: Spc7 kinetochor 91.1 13 0.00028 39.5 17.0 53 252-309 125-177 (325)
94 TIGR01843 type_I_hlyD type I s 91.1 23 0.00049 37.3 19.9 40 546-585 244-283 (423)
95 KOG0976 Rho/Rac1-interacting s 91.0 45 0.00097 40.5 32.9 277 229-526 96-382 (1265)
96 PF04012 PspA_IM30: PspA/IM30 90.9 18 0.00039 35.8 17.4 15 504-518 167-181 (221)
97 KOG0612 Rho-associated, coiled 90.5 58 0.0013 41.0 34.0 81 217-297 436-531 (1317)
98 KOG0018 Structural maintenance 90.4 38 0.00082 42.0 21.5 227 256-513 237-476 (1141)
99 KOG0963 Transcription factor/C 90.1 45 0.00097 39.2 39.7 223 144-414 18-273 (629)
100 PF06008 Laminin_I: Laminin Do 89.8 26 0.00056 35.9 27.7 86 336-421 47-144 (264)
101 PLN03188 kinesin-12 family pro 89.7 68 0.0015 40.6 25.8 119 453-573 1121-1250(1320)
102 TIGR03007 pepcterm_ChnLen poly 89.6 27 0.00059 38.4 18.5 19 333-351 274-292 (498)
103 PF14662 CCDC155: Coiled-coil 88.9 29 0.00063 35.4 19.8 113 388-514 16-128 (193)
104 PF14662 CCDC155: Coiled-coil 88.8 30 0.00065 35.3 18.9 144 333-480 35-185 (193)
105 PF05622 HOOK: HOOK protein; 88.7 0.24 5.3E-06 57.2 2.2 49 401-449 485-533 (713)
106 PF13851 GAS: Growth-arrest sp 88.7 25 0.00054 35.3 15.9 99 458-556 17-129 (201)
107 PF11559 ADIP: Afadin- and alp 88.3 14 0.0003 34.8 13.2 34 458-491 57-90 (151)
108 TIGR03185 DNA_S_dndD DNA sulfu 88.3 56 0.0012 37.9 29.7 123 268-396 160-289 (650)
109 PF05911 DUF869: Plant protein 88.0 70 0.0015 38.6 24.6 122 368-510 595-716 (769)
110 COG5185 HEC1 Protein involved 87.9 57 0.0012 37.5 28.7 327 209-558 218-586 (622)
111 PF10473 CENP-F_leu_zip: Leuci 87.9 27 0.00059 33.8 16.4 93 412-518 11-103 (140)
112 PF00769 ERM: Ezrin/radixin/mo 86.8 17 0.00037 37.5 13.8 122 347-489 4-125 (246)
113 KOG4593 Mitotic checkpoint pro 86.8 77 0.0017 37.8 36.9 144 277-420 115-274 (716)
114 TIGR01005 eps_transp_fam exopo 86.7 71 0.0015 37.4 22.8 31 369-399 237-267 (754)
115 PF15397 DUF4618: Domain of un 86.7 47 0.001 35.2 17.5 143 392-572 8-155 (258)
116 KOG0963 Transcription factor/C 86.1 79 0.0017 37.3 34.2 370 92-514 11-402 (629)
117 TIGR02977 phageshock_pspA phag 85.8 42 0.00091 33.8 19.2 48 341-388 31-78 (219)
118 KOG0982 Centrosomal protein Nu 85.5 72 0.0016 36.3 19.6 162 368-573 249-428 (502)
119 PRK10869 recombination and rep 85.2 77 0.0017 36.4 25.0 40 423-477 294-334 (553)
120 PF15070 GOLGA2L5: Putative go 83.8 98 0.0021 36.4 32.1 135 270-404 11-157 (617)
121 smart00787 Spc7 Spc7 kinetocho 83.6 26 0.00055 37.7 13.8 46 253-303 121-166 (312)
122 PF09787 Golgin_A5: Golgin sub 83.5 86 0.0019 35.5 27.6 65 499-572 366-430 (511)
123 PF05667 DUF812: Protein of un 83.3 1E+02 0.0022 36.2 21.0 37 521-557 489-528 (594)
124 KOG0249 LAR-interacting protei 83.2 41 0.0009 40.3 16.0 122 379-512 66-187 (916)
125 KOG0979 Structural maintenance 83.1 1.3E+02 0.0029 37.4 22.9 68 424-491 275-342 (1072)
126 PF15619 Lebercilin: Ciliary p 82.5 58 0.0013 32.8 19.5 23 469-491 120-142 (194)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.5 42 0.00092 31.3 17.6 74 500-573 57-130 (132)
128 KOG0980 Actin-binding protein 81.8 1.4E+02 0.003 36.8 27.0 63 340-402 388-450 (980)
129 COG1340 Uncharacterized archae 81.0 87 0.0019 33.9 30.0 210 341-573 34-246 (294)
130 COG0419 SbcC ATPase involved i 80.9 1.4E+02 0.003 36.1 46.1 28 263-290 406-433 (908)
131 COG3883 Uncharacterized protei 80.1 88 0.0019 33.4 19.9 61 499-571 166-226 (265)
132 KOG0249 LAR-interacting protei 79.6 91 0.002 37.6 17.1 81 332-417 103-183 (916)
133 PRK10884 SH3 domain-containing 79.4 21 0.00045 36.3 10.8 24 338-361 90-113 (206)
134 TIGR01843 type_I_hlyD type I s 78.5 94 0.002 32.8 17.5 12 469-480 255-266 (423)
135 PRK10698 phage shock protein P 78.3 83 0.0018 32.1 20.8 13 474-486 173-185 (222)
136 TIGR00634 recN DNA repair prot 78.0 1.3E+02 0.0029 34.3 22.0 17 422-438 298-314 (563)
137 PF08614 ATG16: Autophagy prot 78.0 16 0.00035 36.0 9.4 108 287-412 73-180 (194)
138 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.6 62 0.0013 30.2 14.6 19 386-404 41-59 (132)
139 COG0419 SbcC ATPase involved i 77.5 1.7E+02 0.0037 35.3 47.9 73 52-124 118-195 (908)
140 PF05266 DUF724: Protein of un 77.4 49 0.0011 33.3 12.6 110 286-396 77-186 (190)
141 KOG1029 Endocytic adaptor prot 77.0 1.9E+02 0.0041 35.5 20.1 86 334-419 430-522 (1118)
142 TIGR02680 conserved hypothetic 76.9 2.2E+02 0.0049 36.3 30.3 123 308-438 222-346 (1353)
143 PF15070 GOLGA2L5: Putative go 76.9 1.6E+02 0.0035 34.7 36.9 142 267-419 167-315 (617)
144 TIGR03017 EpsF chain length de 76.7 1.2E+02 0.0025 32.9 19.5 46 505-551 321-366 (444)
145 TIGR01010 BexC_CtrB_KpsE polys 76.7 76 0.0017 33.8 14.6 138 251-403 168-305 (362)
146 PF04156 IncA: IncA protein; 76.6 75 0.0016 30.6 13.6 10 310-319 82-91 (191)
147 smart00787 Spc7 Spc7 kinetocho 76.4 70 0.0015 34.4 14.2 58 357-414 206-263 (312)
148 PF11559 ADIP: Afadin- and alp 75.9 55 0.0012 30.8 11.9 68 333-400 65-132 (151)
149 PF00769 ERM: Ezrin/radixin/mo 75.8 99 0.0021 32.0 14.7 110 375-491 4-113 (246)
150 PF10481 CENP-F_N: Cenp-F N-te 75.7 1E+02 0.0022 33.4 14.8 98 350-489 41-138 (307)
151 PF05483 SCP-1: Synaptonemal c 75.3 1.9E+02 0.0042 34.8 37.1 194 208-411 113-331 (786)
152 PRK10476 multidrug resistance 75.0 1.2E+02 0.0025 32.1 15.3 35 407-442 135-169 (346)
153 PF05335 DUF745: Protein of un 74.8 1E+02 0.0022 31.2 15.6 113 318-448 62-174 (188)
154 PRK10884 SH3 domain-containing 74.4 33 0.00072 34.9 10.7 37 367-403 130-166 (206)
155 PF13747 DUF4164: Domain of un 74.3 34 0.00075 30.5 9.5 66 339-415 13-78 (89)
156 KOG4673 Transcription factor T 73.6 2.2E+02 0.0047 34.6 34.2 104 368-486 522-631 (961)
157 TIGR02680 conserved hypothetic 72.9 2.8E+02 0.006 35.5 29.6 30 99-128 424-453 (1353)
158 PF06160 EzrA: Septation ring 72.8 1.8E+02 0.004 33.4 36.4 189 246-441 75-268 (560)
159 PF04912 Dynamitin: Dynamitin 72.3 94 0.002 33.9 14.2 20 115-134 33-52 (388)
160 PF04156 IncA: IncA protein; 71.9 62 0.0014 31.2 11.6 37 378-414 111-147 (191)
161 KOG4438 Centromere-associated 71.5 1.9E+02 0.0041 33.0 28.2 167 400-570 219-429 (446)
162 PF13851 GAS: Growth-arrest sp 70.9 1.2E+02 0.0026 30.5 18.0 53 306-358 27-79 (201)
163 KOG0978 E3 ubiquitin ligase in 70.6 2.5E+02 0.0053 33.9 43.6 81 499-579 528-625 (698)
164 PF12325 TMF_TATA_bd: TATA ele 70.3 99 0.0021 29.2 12.2 98 458-570 21-118 (120)
165 KOG0804 Cytoplasmic Zn-finger 69.9 36 0.00079 38.7 10.5 30 499-528 365-394 (493)
166 TIGR01000 bacteriocin_acc bact 69.4 1.9E+02 0.0041 32.1 22.0 82 504-585 238-328 (457)
167 KOG1853 LIS1-interacting prote 68.8 88 0.0019 33.6 12.5 39 374-412 89-127 (333)
168 COG4942 Membrane-bound metallo 67.6 2.2E+02 0.0049 32.3 24.9 70 316-385 38-110 (420)
169 PF08614 ATG16: Autophagy prot 67.3 53 0.0011 32.4 10.1 107 463-569 70-179 (194)
170 PF06120 Phage_HK97_TLTM: Tail 66.5 75 0.0016 34.4 11.7 81 333-413 87-171 (301)
171 PRK09841 cryptic autophosphory 66.5 2.6E+02 0.0057 33.1 17.1 140 238-403 252-397 (726)
172 COG4942 Membrane-bound metallo 66.5 2.4E+02 0.0051 32.1 24.0 10 602-611 330-339 (420)
173 PF12325 TMF_TATA_bd: TATA ele 66.3 1.2E+02 0.0026 28.7 13.1 70 368-448 22-91 (120)
174 PRK10929 putative mechanosensi 64.3 3.9E+02 0.0085 33.9 30.7 32 424-455 278-309 (1109)
175 PF05266 DUF724: Protein of un 63.9 1.5E+02 0.0033 29.9 12.6 79 334-412 96-174 (190)
176 KOG1029 Endocytic adaptor prot 63.4 3.7E+02 0.0079 33.3 29.0 54 334-387 444-504 (1118)
177 PF15294 Leu_zip: Leucine zipp 63.2 1.2E+02 0.0026 32.6 12.3 75 370-444 126-209 (278)
178 PF08826 DMPK_coil: DMPK coile 63.2 37 0.00079 28.8 6.9 46 345-390 15-60 (61)
179 PF05278 PEARLI-4: Arabidopsis 63.1 2.2E+02 0.0047 30.6 14.9 54 334-387 207-260 (269)
180 KOG0962 DNA repair protein RAD 63.0 4.4E+02 0.0095 34.0 30.0 128 143-295 821-955 (1294)
181 PF15619 Lebercilin: Ciliary p 62.9 1.8E+02 0.0038 29.5 22.1 173 341-557 12-187 (194)
182 PRK11519 tyrosine kinase; Prov 62.6 2.2E+02 0.0047 33.7 15.5 61 332-403 337-397 (719)
183 smart00338 BRLZ basic region l 62.5 46 0.00099 27.3 7.4 49 516-564 15-63 (65)
184 PF08647 BRE1: BRE1 E3 ubiquit 62.5 40 0.00087 30.1 7.6 59 229-287 7-65 (96)
185 TIGR02338 gimC_beta prefoldin, 62.0 1.1E+02 0.0023 27.7 10.4 39 529-567 69-107 (110)
186 KOG1853 LIS1-interacting prote 61.7 2.4E+02 0.0051 30.5 18.3 78 391-481 28-105 (333)
187 PF10168 Nup88: Nuclear pore c 61.6 2.2E+02 0.0048 34.2 15.4 116 207-326 538-656 (717)
188 PF06810 Phage_GP20: Phage min 61.6 1.1E+02 0.0024 29.8 10.9 65 335-399 14-81 (155)
189 TIGR00998 8a0101 efflux pump m 61.4 2E+02 0.0044 29.7 15.5 58 377-438 102-159 (334)
190 PLN02939 transferase, transfer 61.3 4.2E+02 0.0091 33.2 23.2 49 469-527 353-401 (977)
191 PF07889 DUF1664: Protein of u 60.9 1.2E+02 0.0027 28.9 10.9 84 337-437 39-122 (126)
192 PF03962 Mnd1: Mnd1 family; I 60.0 91 0.002 31.1 10.3 89 332-438 60-148 (188)
193 cd00632 Prefoldin_beta Prefold 59.8 1.3E+02 0.0028 26.9 10.4 39 529-567 65-103 (105)
194 PRK11281 hypothetical protein; 59.1 4.7E+02 0.01 33.2 36.8 58 244-301 126-183 (1113)
195 PF15456 Uds1: Up-regulated Du 58.6 1.5E+02 0.0032 28.2 10.9 74 332-405 20-117 (124)
196 PF08317 Spc7: Spc7 kinetochor 58.4 2.6E+02 0.0056 29.9 21.7 62 328-389 203-264 (325)
197 PRK03598 putative efflux pump 58.4 1.7E+02 0.0037 30.6 12.5 38 548-585 178-215 (331)
198 KOG0964 Structural maintenance 58.2 4.8E+02 0.01 33.0 32.5 133 279-418 228-370 (1200)
199 PF01920 Prefoldin_2: Prefoldi 58.1 1.2E+02 0.0027 26.1 10.4 67 499-565 9-100 (106)
200 TIGR02132 phaR_Bmeg polyhydrox 57.5 1E+02 0.0022 31.5 10.1 91 322-412 60-150 (189)
201 PF10146 zf-C4H2: Zinc finger- 57.4 1.8E+02 0.004 30.2 12.3 62 516-577 39-103 (230)
202 PF04102 SlyX: SlyX; InterPro 57.3 44 0.00095 28.3 6.5 47 529-575 6-52 (69)
203 TIGR02977 phageshock_pspA phag 56.6 2.3E+02 0.0049 28.6 14.8 44 529-572 101-144 (219)
204 COG1842 PspA Phage shock prote 56.2 2.5E+02 0.0055 29.1 18.4 19 427-445 122-140 (225)
205 PF07106 TBPIP: Tat binding pr 55.7 75 0.0016 30.5 8.7 84 310-393 34-133 (169)
206 PRK00295 hypothetical protein; 54.4 57 0.0012 27.8 6.8 47 529-575 7-53 (68)
207 KOG4360 Uncharacterized coiled 54.4 4.2E+02 0.0092 31.1 15.5 131 333-476 89-249 (596)
208 KOG0804 Cytoplasmic Zn-finger 53.8 2.4E+02 0.0053 32.4 13.2 21 108-128 87-107 (493)
209 COG2433 Uncharacterized conser 53.2 1.8E+02 0.0038 34.6 12.4 70 334-403 436-508 (652)
210 PF05546 She9_MDM33: She9 / Md 52.3 2.9E+02 0.0063 28.7 14.6 61 368-428 31-95 (207)
211 PRK00736 hypothetical protein; 52.1 65 0.0014 27.4 6.8 47 529-575 7-53 (68)
212 PRK11085 magnesium/nickel/coba 51.4 39 0.00084 36.3 6.6 76 96-182 128-203 (316)
213 TIGR02338 gimC_beta prefoldin, 51.3 1.7E+02 0.0037 26.5 9.8 76 427-521 26-107 (110)
214 PF00170 bZIP_1: bZIP transcri 51.0 1E+02 0.0022 25.2 7.6 48 517-564 16-63 (64)
215 KOG4643 Uncharacterized coiled 51.0 6.3E+02 0.014 32.1 27.6 34 529-562 525-558 (1195)
216 TIGR01000 bacteriocin_acc bact 50.9 3.9E+02 0.0084 29.7 20.6 25 500-524 289-313 (457)
217 PF05546 She9_MDM33: She9 / Md 50.5 3.1E+02 0.0068 28.5 12.7 50 321-372 21-70 (207)
218 COG1566 EmrA Multidrug resista 50.4 2.9E+02 0.0063 30.5 13.0 99 341-442 98-207 (352)
219 PLN03229 acetyl-coenzyme A car 50.3 4.9E+02 0.011 31.8 15.6 61 338-436 646-706 (762)
220 PRK00846 hypothetical protein; 50.0 81 0.0017 27.9 7.2 49 527-575 13-61 (77)
221 PF13870 DUF4201: Domain of un 50.0 2.5E+02 0.0054 27.2 16.9 109 307-418 18-140 (177)
222 PF10212 TTKRSYEDQ: Predicted 49.8 4.9E+02 0.011 30.5 19.0 25 467-491 420-444 (518)
223 PRK04325 hypothetical protein; 49.7 72 0.0016 27.6 6.8 47 529-575 11-57 (74)
224 KOG0982 Centrosomal protein Nu 49.5 4.7E+02 0.01 30.2 17.3 154 368-559 221-392 (502)
225 PF06005 DUF904: Protein of un 49.1 68 0.0015 27.8 6.5 47 529-575 6-52 (72)
226 COG1842 PspA Phage shock prote 48.3 3.4E+02 0.0073 28.2 15.6 55 426-480 25-79 (225)
227 PF09728 Taxilin: Myosin-like 47.8 3.9E+02 0.0084 28.8 29.2 79 489-567 203-298 (309)
228 KOG0980 Actin-binding protein 47.7 6.6E+02 0.014 31.4 24.7 51 463-520 469-519 (980)
229 KOG0993 Rab5 GTPase effector R 47.7 1.2E+02 0.0025 34.7 9.5 72 396-482 106-177 (542)
230 PTZ00464 SNF-7-like protein; P 47.6 1.5E+02 0.0032 30.4 9.7 73 477-559 21-93 (211)
231 PF10234 Cluap1: Clusterin-ass 47.4 3.9E+02 0.0084 28.7 13.1 117 222-356 123-240 (267)
232 TIGR03017 EpsF chain length de 47.3 4.1E+02 0.0088 28.9 22.0 29 547-575 341-369 (444)
233 KOG1655 Protein involved in va 47.1 3.6E+02 0.0077 28.2 13.2 94 474-575 19-153 (218)
234 PRK09343 prefoldin subunit bet 47.0 2.4E+02 0.0053 26.2 10.7 41 528-568 72-112 (121)
235 TIGR00293 prefoldin, archaeal 46.6 85 0.0018 28.5 7.2 44 530-573 82-125 (126)
236 COG1382 GimC Prefoldin, chaper 46.6 1.1E+02 0.0024 29.1 8.0 72 428-511 30-107 (119)
237 PF11471 Sugarporin_N: Maltopo 45.8 33 0.00072 28.8 4.0 29 373-401 29-57 (60)
238 PRK02793 phi X174 lysis protei 45.7 1.1E+02 0.0023 26.4 7.2 48 528-575 9-56 (72)
239 PF12329 TMF_DNA_bd: TATA elem 45.5 1.4E+02 0.0029 25.9 7.8 62 333-394 11-72 (74)
240 PF04728 LPP: Lipoprotein leuc 45.4 1.1E+02 0.0023 25.9 6.8 32 365-396 20-51 (56)
241 KOG0962 DNA repair protein RAD 45.3 8.1E+02 0.018 31.8 37.6 35 489-523 532-566 (1294)
242 PRK02119 hypothetical protein; 44.3 99 0.0021 26.7 6.8 48 528-575 10-57 (73)
243 PF04582 Reo_sigmaC: Reovirus 44.1 41 0.00089 36.7 5.4 105 264-386 32-136 (326)
244 PF10186 Atg14: UV radiation r 44.0 3.5E+02 0.0077 27.2 18.7 78 468-552 57-134 (302)
245 PF06818 Fez1: Fez1; InterPro 43.2 4E+02 0.0086 27.6 12.7 104 459-569 58-170 (202)
246 PF04111 APG6: Autophagy prote 42.9 2.6E+02 0.0056 30.1 11.1 70 338-407 61-137 (314)
247 PF02994 Transposase_22: L1 tr 42.7 35 0.00076 37.3 4.7 49 372-420 140-188 (370)
248 PF09403 FadA: Adhesion protei 42.4 3.2E+02 0.0068 26.2 10.7 69 506-574 24-101 (126)
249 PF04012 PspA_IM30: PspA/IM30 42.4 3.6E+02 0.0077 26.8 21.2 51 346-396 28-78 (221)
250 KOG4643 Uncharacterized coiled 42.2 8.4E+02 0.018 31.1 33.3 40 536-575 490-529 (1195)
251 PF04111 APG6: Autophagy prote 41.9 3.2E+02 0.0069 29.4 11.6 50 333-382 42-91 (314)
252 PRK10869 recombination and rep 41.9 6.1E+02 0.013 29.3 22.4 19 510-528 297-315 (553)
253 PF06548 Kinesin-related: Kine 41.8 6.2E+02 0.013 29.4 21.2 135 291-442 101-239 (488)
254 PRK04406 hypothetical protein; 41.8 1.7E+02 0.0038 25.4 7.9 48 528-575 12-59 (75)
255 PF00435 Spectrin: Spectrin re 41.5 1.9E+02 0.0042 23.5 11.6 80 337-418 4-87 (105)
256 PF12795 MscS_porin: Mechanose 41.1 4E+02 0.0087 27.1 21.1 147 242-407 81-228 (240)
257 PF07544 Med9: RNA polymerase 40.5 66 0.0014 28.1 5.3 41 95-135 6-49 (83)
258 PF06548 Kinesin-related: Kine 40.2 6.5E+02 0.014 29.2 21.8 115 458-574 356-481 (488)
259 PF12777 MT: Microtubule-bindi 40.1 87 0.0019 33.6 7.2 29 148-176 8-36 (344)
260 COG0497 RecN ATPase involved i 39.8 7E+02 0.015 29.5 25.2 39 260-298 157-195 (557)
261 PRK10246 exonuclease subunit S 39.0 8.7E+02 0.019 30.3 31.6 21 425-445 777-797 (1047)
262 PRK09343 prefoldin subunit bet 38.8 3.3E+02 0.0071 25.4 10.7 77 427-522 30-112 (121)
263 PF09755 DUF2046: Uncharacteri 38.4 5.8E+02 0.012 28.1 24.7 199 308-591 22-226 (310)
264 PF05010 TACC: Transforming ac 38.4 4.6E+02 0.01 27.0 24.0 37 485-528 140-180 (207)
265 KOG0239 Kinesin (KAR3 subfamil 38.4 7.8E+02 0.017 29.6 20.2 89 479-575 225-313 (670)
266 PRK11020 hypothetical protein; 37.5 1.6E+02 0.0036 28.1 7.6 68 500-581 3-71 (118)
267 PF09744 Jnk-SapK_ap_N: JNK_SA 37.2 3.1E+02 0.0066 27.1 9.7 104 306-413 26-133 (158)
268 PF10481 CENP-F_N: Cenp-F N-te 37.0 6E+02 0.013 27.8 13.1 94 394-522 15-108 (307)
269 PF09730 BicD: Microtubule-ass 36.9 8.6E+02 0.019 29.6 36.0 18 499-516 370-387 (717)
270 TIGR01010 BexC_CtrB_KpsE polys 36.8 5.5E+02 0.012 27.4 13.4 82 306-387 174-260 (362)
271 PF10212 TTKRSYEDQ: Predicted 36.2 3.3E+02 0.0072 31.8 11.1 92 297-391 404-509 (518)
272 PF15294 Leu_zip: Leucine zipp 36.2 5.9E+02 0.013 27.6 20.6 94 465-558 130-239 (278)
273 PF10146 zf-C4H2: Zinc finger- 36.2 5.2E+02 0.011 26.9 13.5 45 368-412 59-103 (230)
274 PRK09841 cryptic autophosphory 36.1 8.1E+02 0.018 29.1 15.0 37 370-406 261-297 (726)
275 PF14197 Cep57_CLD_2: Centroso 35.8 2.9E+02 0.0062 23.8 8.5 26 334-359 5-30 (69)
276 PF03915 AIP3: Actin interacti 35.4 6.2E+02 0.013 28.8 12.9 54 449-515 213-266 (424)
277 PRK15396 murein lipoprotein; P 34.9 1.4E+02 0.0031 26.4 6.4 43 354-396 31-73 (78)
278 PF05278 PEARLI-4: Arabidopsis 34.9 5.9E+02 0.013 27.5 12.0 51 370-420 215-265 (269)
279 PF08826 DMPK_coil: DMPK coile 34.8 2.6E+02 0.0057 23.7 7.7 39 379-417 14-52 (61)
280 COG2433 Uncharacterized conser 34.8 2.7E+02 0.0059 33.2 10.3 33 543-575 476-508 (652)
281 COG1566 EmrA Multidrug resista 34.7 6.7E+02 0.015 27.8 13.1 76 353-438 89-164 (352)
282 PRK11519 tyrosine kinase; Prov 34.6 6.6E+02 0.014 29.8 13.7 38 267-304 260-297 (719)
283 PF15254 CCDC14: Coiled-coil d 34.3 9.9E+02 0.021 29.6 16.4 126 276-416 339-474 (861)
284 PF09728 Taxilin: Myosin-like 33.7 6.4E+02 0.014 27.2 30.5 62 461-523 245-306 (309)
285 PF05377 FlaC_arch: Flagella a 33.0 1E+02 0.0022 25.9 4.9 38 377-414 1-38 (55)
286 PF10267 Tmemb_cc2: Predicted 32.3 7.4E+02 0.016 28.0 12.8 52 426-480 259-318 (395)
287 TIGR02231 conserved hypothetic 32.1 4.2E+02 0.0092 29.9 11.2 86 333-418 70-173 (525)
288 PF03310 Cauli_DNA-bind: Cauli 32.0 71 0.0015 30.6 4.3 81 107-189 6-101 (121)
289 PF12072 DUF3552: Domain of un 31.7 5.4E+02 0.012 25.7 11.9 32 333-364 70-101 (201)
290 PF04100 Vps53_N: Vps53-like, 31.7 7.4E+02 0.016 27.4 14.5 57 334-390 25-85 (383)
291 PF10779 XhlA: Haemolysin XhlA 31.6 2.3E+02 0.0049 24.0 7.0 46 338-383 3-48 (71)
292 KOG4603 TBP-1 interacting prot 31.6 3.9E+02 0.0085 27.4 9.5 121 272-394 5-141 (201)
293 PF10234 Cluap1: Clusterin-ass 31.4 1.8E+02 0.0039 31.1 7.6 48 350-397 171-218 (267)
294 KOG1899 LAR transmembrane tyro 30.7 1.1E+03 0.023 28.9 20.1 62 334-395 104-165 (861)
295 COG1382 GimC Prefoldin, chaper 30.7 3.8E+02 0.0083 25.6 8.9 19 285-303 10-28 (119)
296 PRK00409 recombination and DNA 30.2 5.1E+02 0.011 31.4 11.9 70 371-446 515-584 (782)
297 PF07106 TBPIP: Tat binding pr 30.0 2.4E+02 0.0053 27.1 7.8 56 334-389 79-136 (169)
298 PF05529 Bap31: B-cell recepto 29.2 3.9E+02 0.0085 26.1 9.1 61 340-400 124-185 (192)
299 TIGR02971 heterocyst_DevB ABC 28.8 6.8E+02 0.015 26.0 14.6 36 550-585 181-216 (327)
300 KOG4809 Rab6 GTPase-interactin 28.7 1.1E+03 0.023 28.3 26.3 47 389-438 430-476 (654)
301 PF02050 FliJ: Flagellar FliJ 28.0 3.7E+02 0.0081 22.8 9.2 69 334-402 12-85 (123)
302 PF01920 Prefoldin_2: Prefoldi 27.9 3.9E+02 0.0085 23.0 8.3 19 338-356 66-84 (106)
303 PF08537 NBP1: Fungal Nap bind 27.5 3.3E+02 0.0072 30.0 8.9 40 333-372 174-213 (323)
304 PF00170 bZIP_1: bZIP transcri 27.4 1.1E+02 0.0023 25.1 4.2 33 486-518 31-63 (64)
305 PRK10476 multidrug resistance 26.8 7.8E+02 0.017 26.0 13.4 17 342-358 87-103 (346)
306 PF06810 Phage_GP20: Phage min 26.4 2.6E+02 0.0056 27.2 7.2 46 306-352 24-69 (155)
307 PF04912 Dynamitin: Dynamitin 26.4 8.8E+02 0.019 26.5 15.4 13 369-381 246-258 (388)
308 PF04108 APG17: Autophagy prot 26.1 9.4E+02 0.02 26.8 27.1 88 269-358 117-216 (412)
309 KOG3647 Predicted coiled-coil 25.8 4E+02 0.0086 29.1 8.9 59 275-333 106-164 (338)
310 PF13747 DUF4164: Domain of un 25.8 4.9E+02 0.011 23.3 10.1 75 499-574 5-79 (89)
311 PRK09973 putative outer membra 25.8 2.3E+02 0.005 25.7 6.2 26 369-394 45-70 (85)
312 TIGR01069 mutS2 MutS2 family p 25.8 6E+02 0.013 30.8 11.5 48 372-419 511-558 (771)
313 COG4372 Uncharacterized protei 25.6 1.1E+03 0.023 27.2 24.2 145 276-420 46-195 (499)
314 PF10498 IFT57: Intra-flagella 25.5 6.9E+02 0.015 27.7 11.1 44 373-416 263-306 (359)
315 KOG3595 Dyneins, heavy chain [ 25.5 1.6E+03 0.034 29.2 27.1 104 459-569 919-1025(1395)
316 PF15397 DUF4618: Domain of un 25.5 8.6E+02 0.019 26.1 24.8 61 536-596 188-250 (258)
317 PF07439 DUF1515: Protein of u 25.1 3.1E+02 0.0067 26.1 7.1 50 336-385 10-63 (112)
318 PF13094 CENP-Q: CENP-Q, a CEN 24.9 2.5E+02 0.0054 26.8 6.8 51 369-419 34-84 (160)
319 PRK11578 macrolide transporter 24.9 3.1E+02 0.0066 29.3 8.1 23 429-451 103-125 (370)
320 PRK13729 conjugal transfer pil 24.8 2.3E+02 0.005 32.6 7.5 48 338-385 73-120 (475)
321 KOG4324 Guanine nucleotide exc 24.8 4.5E+02 0.0097 30.3 9.5 163 384-562 59-236 (476)
322 PF06818 Fez1: Fez1; InterPro 24.8 8E+02 0.017 25.5 10.6 76 307-386 15-90 (202)
323 PF15188 CCDC-167: Coiled-coil 24.7 2E+02 0.0043 26.0 5.6 60 223-282 2-65 (85)
324 PF10186 Atg14: UV radiation r 24.2 7.5E+02 0.016 24.9 15.8 46 369-414 63-108 (302)
325 PF07544 Med9: RNA polymerase 23.8 5E+02 0.011 22.7 8.1 76 133-233 2-77 (83)
326 PF11471 Sugarporin_N: Maltopo 23.8 97 0.0021 26.1 3.3 30 367-396 30-59 (60)
327 PRK10698 phage shock protein P 23.8 8E+02 0.017 25.1 15.5 57 518-574 87-146 (222)
328 PF09177 Syntaxin-6_N: Syntaxi 23.7 5.1E+02 0.011 22.8 8.4 88 379-478 8-95 (97)
329 PF06785 UPF0242: Uncharacteri 23.6 1.1E+03 0.024 26.6 12.4 45 370-414 128-172 (401)
330 PF05384 DegS: Sensor protein 23.6 7.3E+02 0.016 24.6 13.3 84 464-561 31-118 (159)
331 PF06428 Sec2p: GDP/GTP exchan 23.5 1.8E+02 0.0039 26.8 5.2 71 365-442 11-82 (100)
332 PF04977 DivIC: Septum formati 23.4 1.3E+02 0.0029 24.6 4.1 37 543-579 19-55 (80)
333 PF00846 Hanta_nucleocap: Hant 23.2 3.7E+02 0.0079 30.6 8.4 54 334-387 2-67 (428)
334 PF04849 HAP1_N: HAP1 N-termin 23.2 1E+03 0.022 26.2 22.3 21 336-356 162-182 (306)
335 PF13514 AAA_27: AAA domain 23.0 1.6E+03 0.034 28.2 42.3 63 104-180 527-589 (1111)
336 PRK00295 hypothetical protein; 22.8 4.3E+02 0.0094 22.5 7.1 29 540-568 25-53 (68)
337 PF15254 CCDC14: Coiled-coil d 22.5 1.3E+03 0.027 28.8 13.0 130 368-528 393-527 (861)
338 KOG4403 Cell surface glycoprot 22.2 1E+03 0.023 27.7 11.7 31 430-460 352-382 (575)
339 PF05529 Bap31: B-cell recepto 21.7 5.7E+02 0.012 25.0 8.8 10 461-470 116-125 (192)
340 PF14584 DUF4446: Protein of u 21.6 2.9E+02 0.0062 27.0 6.5 58 536-593 41-98 (151)
341 KOG0239 Kinesin (KAR3 subfamil 21.5 1.5E+03 0.032 27.4 15.7 25 593-617 362-386 (670)
342 PF10498 IFT57: Intra-flagella 21.1 1.1E+03 0.024 26.1 11.6 20 62-83 47-66 (359)
343 KOG3958 Putative dynamitin [Cy 21.1 1.1E+03 0.024 26.3 11.2 113 425-559 191-315 (371)
344 PRK03947 prefoldin subunit alp 21.0 6.8E+02 0.015 23.2 10.6 43 531-573 91-133 (140)
345 PF07111 HCR: Alpha helical co 20.9 1.6E+03 0.035 27.6 32.7 301 234-572 72-404 (739)
346 PF15188 CCDC-167: Coiled-coil 20.4 56 0.0012 29.4 1.3 63 118-186 2-67 (85)
347 PF10458 Val_tRNA-synt_C: Valy 20.3 5.1E+02 0.011 21.5 7.2 27 333-359 3-29 (66)
348 PF05739 SNARE: SNARE domain; 20.2 4.4E+02 0.0096 20.8 8.7 55 351-405 7-61 (63)
349 KOG3850 Predicted membrane pro 20.1 1.4E+03 0.029 26.4 12.2 50 426-478 307-364 (455)
No 1
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=100.00 E-value=5e-34 Score=276.45 Aligned_cols=188 Identities=18% Similarity=0.260 Sum_probs=184.8
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
++++|++++|+|++|++++++|++|+.+|.+|+.+++++|+|.+|++|+|++|+..+++||+.+|.||++++ +
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk-------~ 74 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAK-------H 74 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------H
Confidence 467899999999999999999999999999999999999999999999999999999999999999999988 9
Q ss_pred hhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 007027 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (621)
Q Consensus 447 saEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~ 526 (621)
+++++++ ||++|+|+++||| ++|++++.||+.+|++|. +|.++++++++++++|+++.++++++.+
T Consensus 75 iaE~adr----K~eEVarkL~iiE---~dLE~~eeraE~~Es~~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d 140 (205)
T KOG1003|consen 75 IAEKADR----KYEEVARKLVIIE---GELERAEERAEAAESQSE-------ELEEDLRILDSNLKSLSAKEEKLEQKEE 140 (205)
T ss_pred HHHHHHH----HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHH
Confidence 9999999 9999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred hh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 527 AS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 527 ~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.| +|++++|++|++|.|++|+++||+|++.+...+.+|+.+...||+|-
T Consensus 141 ~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 141 KYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999984
No 2
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.96 E-value=1.2e-28 Score=243.39 Aligned_cols=214 Identities=22% Similarity=0.334 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh-------hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEe-------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerel 413 (621)
+|+..++.+++.+..++..+..++.. +++++++|+|+|++|++++.++++|+..+..||..+++.++++.|.+
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~ 80 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888887777777766666654 48899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 007027 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (621)
Q Consensus 414 k~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~L 493 (621)
++|++|...+++|++.||.||++++ .+++.++. +|+++.+++.+++ ++|.+|++|++.+|++|.
T Consensus 81 k~lE~r~~~~eeri~~lE~~l~ea~-------~~~ee~e~----k~~E~~rkl~~~E---~~Le~aEeR~e~~E~ki~-- 144 (237)
T PF00261_consen 81 KVLENREQSDEERIEELEQQLKEAK-------RRAEEAER----KYEEVERKLKVLE---QELERAEERAEAAESKIK-- 144 (237)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHH----HHHHCHHHHHHHH---HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHHHHHHHHHHH---HHHHHHHHHHhhhchhHH--
Confidence 9999999999999999999999988 99999999 9999999999999 999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007027 494 SEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563 (621)
Q Consensus 494 se~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~kee 563 (621)
+|+++|..++++|++||++..+|+++++.| +++++.|+.++++.|.+|+.++|+|++.|...+.+
T Consensus 145 -----eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 145 -----ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcC
Q 007027 564 NKLLVEKLQYSG 575 (621)
Q Consensus 564 nK~L~ekld~t~ 575 (621)
|+.+..+||+|=
T Consensus 220 ~~~~~~eld~~l 231 (237)
T PF00261_consen 220 YKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999873
No 3
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=99.19 E-value=3.3e-10 Score=106.25 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=99.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 007027 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (621)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (621)
.+.|+.+|++|+..||.+|+.++.+|..++..++.... .+-+|+|+|+.|++++.+|+.++..|..|+.++...+++
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47899999999999999999999999999999998754 344899999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 409 LSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 409 Lerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
++|.++.|+.+....+.|++.++.++++++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888999999999988764
No 4
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=99.17 E-value=8e-10 Score=110.04 Aligned_cols=216 Identities=21% Similarity=0.316 Sum_probs=148.1
Q ss_pred hhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 007027 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (621)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE 368 (621)
|++.++..|-.+..|...+..+|+.....+. .. +.++.+|+.|++.+|.+|+.++..|..+..+++..+
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~----------~a-E~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e 70 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAE----------KA-EAEVASLQRRIQLLEEELERAEERLEEATEKLEEAE 70 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5666677776666666666666665553333 22 789999999999999999999999888888887753
Q ss_pred H--------------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHH
Q 007027 369 E--------------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (621)
Q Consensus 369 ~--------------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QL 434 (621)
. .......+|..|+..+..|..++..|..|+..+ .+.+.++++.=...++|++.+|.++
T Consensus 71 ~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~-------~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 71 KRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV-------ERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhchhH
Confidence 3 223344445555555555555555555555444 4444444443222356777888888
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 007027 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (621)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL 514 (621)
++.+.+|.........-.......+......+.-|.+|..++..|+.|++.||.+|..|-..+-.|+.+|.....+.+++
T Consensus 144 ~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776665444332222222233456677788888999999999999999999988888888888888888888888
Q ss_pred HHHHHHHh
Q 007027 515 ESSLNRAN 522 (621)
Q Consensus 515 E~sl~kA~ 522 (621)
..-++.+.
T Consensus 224 ~~eld~~l 231 (237)
T PF00261_consen 224 QEELDQTL 231 (237)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 5
>PRK02224 chromosome segregation protein; Provisional
Probab=99.03 E-value=3.8e-05 Score=88.28 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=29.6
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEA 272 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EA 272 (621)
.++.++...+...+.+..++...+.....++.....+....-.+
T Consensus 262 ~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~ 305 (880)
T PRK02224 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD 305 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666777666667777777777777777776666655554333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=98.98 E-value=1.6e-05 Score=91.43 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
++..++.++..++..++....++..+....+....++.++...++..+.....+++.+..+..++..+.....+++.+++
T Consensus 510 ~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555666666666666666777767766666
Q ss_pred hhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhH-----HHHHHHHhhhhhhhhhhhhhhhhh
Q 007027 415 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-----ETLIEDLKSKVSKAESKTESVEEQ 489 (621)
Q Consensus 415 ~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dm-----e~vIEdLk~Kl~rAE~RaE~aEsK 489 (621)
.|+.. ..-...+..++..+.+.+..+...+..-+....+-..+-..+..+ ..-.+.+..++.+++..++.++.+
T Consensus 590 ~le~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~ 668 (880)
T PRK02224 590 SLERI-RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668 (880)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66521 101222223333333222222222222222222112223333333 234556667777777777777777
Q ss_pred hhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 490 ~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
+. ++..++..+..++..++..+.........+
T Consensus 669 l~-------~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~ 700 (880)
T PRK02224 669 LD-------ELREERDDLQAEIGAVENELEELEELRERR 700 (880)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 777777777778877777777665444443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.73 E-value=0.00014 Score=84.55 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=27.8
Q ss_pred chHHHHHHHHHH---HHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHH
Q 007027 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAA 262 (621)
Q Consensus 209 t~eqqR~iLrML---ekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~ 262 (621)
.+..+|.+|..+ .....+-.+...+|.....+..+|+..+.........++...
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~ 207 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER 207 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788877654 222223333444555555555555555555555444444433
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.69 E-value=4.2e-05 Score=88.17 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~ 558 (621)
..++.-++.+++.|...++.+...+ ..+..|..|...-...|...++.|+..|.
T Consensus 964 ~~~~~~l~~~i~~lg~aiee~~~~~----~~a~er~~~l~~q~~dL~~~~~~L~~~i~ 1017 (1179)
T TIGR02168 964 EDDEEEARRRLKRLENKIKELGPVN----LAAIEEYEELKERYDFLTAQKEDLTEAKE 1017 (1179)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777766555554433 11223444444444444444444444333
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.68 E-value=3.2e-05 Score=92.48 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHhhHHHHHHH---HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhcCCCCceee
Q 007027 507 MRDKIKILESS---LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL-VEKLQYSGKSSSATM 582 (621)
Q Consensus 507 l~~~lksLE~s---l~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L-~ekld~t~~~~~~~~ 582 (621)
+..+++.++.. +...|-+-..-.++...|.++...-...|...+++|++.|.....+.+.. .+.++....+-+..+
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIF 1026 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555 22223223333677788888888889999999999999988877665543 555555544443333
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.63 E-value=0.0004 Score=80.81 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=7.9
Q ss_pred hHHHHHHHHHhhHHHH
Q 007027 499 ELKNKQSFMRDKIKIL 514 (621)
Q Consensus 499 ELeEEL~~l~~~lksL 514 (621)
++..++..+..+++.+
T Consensus 955 ~l~~~l~~l~~~i~~l 970 (1164)
T TIGR02169 955 DVQAELQRVEEEIRAL 970 (1164)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4445555555544444
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=0.0013 Score=79.86 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=36.9
Q ss_pred hhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 106 DSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 106 dsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
..++.+++.-+.++..++......+.+|.- .++ - ..-..++..-|.+.++.+...+...+.|.-+..+|.
T Consensus 597 ~~el~~~e~~l~~~~~~l~~~~~eL~~~~~--~i~--~---~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~ 666 (1311)
T TIGR00606 597 NKELASLEQNKNHINNELESKEEQLSSYED--KLF--D---VCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYS 666 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--c---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444432 000 0 113455666777777777777777666666655544
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.61 E-value=0.00028 Score=81.51 Aligned_cols=57 Identities=19% Similarity=0.049 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007027 498 FELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQ 554 (621)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe 554 (621)
.+|...+.-++..+..++.....|.++-+.+ ..|+....+-.+..+.++..+..++-
T Consensus 968 ~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 968 EEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888887666654333333333333 45555555556666666655555554
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=0.018 Score=70.27 Aligned_cols=55 Identities=9% Similarity=-0.014 Sum_probs=34.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 007027 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (621)
Q Consensus 244 Lk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (621)
+...+.....+...+++....+...+-++++-...+++..+.+...|+...-.+.
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555666666666666666666666666666666666666666666
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.32 E-value=0.018 Score=72.74 Aligned_cols=333 Identities=20% Similarity=0.227 Sum_probs=158.2
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (621)
.++.++...+.-...+.........+++-+|+........+-+.+--+. -++.+..||....-+|.+...+|...+
T Consensus 961 ~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~----~l~k~~~kle~~l~~le~~le~e~~~r 1036 (1930)
T KOG0161|consen 961 AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAK----SLNKAKAKLEQQLDDLEVTLEREKRIR 1036 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333333444444444444455544444444433332222 123344555555555555555555555
Q ss_pred HHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHH
Q 007027 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESL 381 (621)
Q Consensus 309 sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelL 381 (621)
-.++...-.|++ .+ +.. -+.+..+..+...|+++++.-...+.+.+.+++.- +..|..|.++|.+|
T Consensus 1037 ~e~Ek~~rkle~---el-~~~---~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1037 MELEKAKRKLEG---EL-KDL---QESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHHH---HH-HHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433322221 11 111 12233355566666666666666666666666553 33555666666666
Q ss_pred HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc------------------hhhhhhHHHHHHHHHHHHHH
Q 007027 382 KESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN------------------TKKVGILENQLRDLEIQLQQ 443 (621)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~d------------------eEK~~~LE~QLKEa~~QLqh 443 (621)
.++++.-....+-++-+...++..-.+++.++...-+...+- ++..-..|.++...+ -.|
T Consensus 1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr--~~~ 1187 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR--KKH 1187 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHH
Confidence 666655555555555555555555555555444332211000 122223333333322 112
Q ss_pred hhhhhHhH---HHHH---hhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 007027 444 AKVSSEAS---QEQQ---SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (621)
Q Consensus 444 A~asaEas---~eqQ---~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (621)
+..+++-. +.-| .++--.=+++..-+.+|...+.....+-..+|.+|..+...+.+|...+.-+..-+.+|-.+
T Consensus 1188 ~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q 1267 (1930)
T KOG0161|consen 1188 ADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAK 1267 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111 0000 00111223444555555566665555666667777644444445555444444443333222
Q ss_pred HHHHhHHH---HhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 518 LNRANIEK---AASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 518 l~kA~q~k---~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
..+-..+- ...+.+++.-..-+-+....+..+++.++.|+.....+.-.++..+.+.
T Consensus 1268 ~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l 1327 (1930)
T KOG0161|consen 1268 RSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQL 1327 (1930)
T ss_pred HHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 1226666666666777777778888888888888777777776666654
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.31 E-value=0.0033 Score=78.90 Aligned_cols=133 Identities=19% Similarity=0.237 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 007027 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (621)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l 507 (621)
.-|++||+-.+..|.+...-.++-...-..+--.|+.+.+-|.||..+++.-+....-+|.+-. +|..+|..+
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~-------dL~~ele~l 1137 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRR-------DLSEELEEL 1137 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3444444444444444444443333322223334445555555555555554444444555555 566666666
Q ss_pred HhhHHHH-HHHHHHHh--H-HHHhh-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 508 RDKIKIL-ESSLNRAN--I-EKAAS-------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 508 ~~~lksL-E~sl~kA~--q-~k~~t-------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
...|... .....+.. . ++.++ -++.......+.++-.+++..+..|..|+-.++.....+
T Consensus 1138 ~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1138 KEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 11111111 1 11111 234445566777777888888888888888777555444
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.29 E-value=0.0041 Score=74.99 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 479 AE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
.+.+....+.++-.|-..|+.--+|...+..++..|....+.....+...
T Consensus 947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l 996 (1163)
T COG1196 947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKL 996 (1163)
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777778887777777777777777766655555444443
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.23 E-value=0.0023 Score=74.96 Aligned_cols=277 Identities=23% Similarity=0.287 Sum_probs=170.6
Q ss_pred ccccccchhHHHHHHhhHHHHHhh----------hhHHHHHhh--cCChhHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh
Q 007027 297 LNGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLE--STKNSEVL-TMKEKVKSLEEQLKESEIRLQNANAC 363 (621)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~----------k~~~lekl~--~s~esEv~-sLqkKvksLE~qLdes~eQL~~A~ak 363 (621)
|.-+..-|-+|+..+.+..|.|+. |=.+|+++. -..-.|+. -+..+...|+++|.........|.+-
T Consensus 219 l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ 298 (1243)
T KOG0971|consen 219 LPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEA 298 (1243)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555553 112233221 11223443 36677888888888888888777766
Q ss_pred hhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCc----hhhhhhHH---H
Q 007027 364 FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSN----TKKVGILE---N 432 (621)
Q Consensus 364 lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr----s~~d----eEK~~~LE---~ 432 (621)
.+..-.++++..--|+.+--+-+=||+|+++-...++-+.+-++|++-.+..|+.- |+.. .--+..|| .
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHH
Confidence 66677799999999999999999999999999999999999999999998888642 2211 12222333 3
Q ss_pred HHHHHHHHHHH----hhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh----------hhhhhhhhhhhccchh
Q 007027 433 QLRDLEIQLQQ----AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK----------TESVEEQCIVLSEDNF 498 (621)
Q Consensus 433 QLKEa~~QLqh----A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R----------aE~aEsK~~~Lse~N~ 498 (621)
.||++=..|.- ++..---.+..-.+|.+++.-+..+-|-|+.++.-||.- |=.||.=...||+.|+
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknl 458 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNL 458 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhcc
Confidence 35544333321 111111111112334444444444444444444433332 2367777889999999
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHH-------HHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVM-------QLATQRELIQ 554 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-----------------lKeae~Rak~aE~lV~-------KL~~ErdrLe 554 (621)
+|++-++-++.-+..||+-.+--.|--+.- .|++..|...+..+|- |.-.-+..|+
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lq 538 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQ 538 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999987654333222211 5677777666665543 3333445677
Q ss_pred HHHHHHHHhhhHHHHHHhh
Q 007027 555 KQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 555 ~ql~s~keenK~L~ekld~ 573 (621)
+||--++..+-...++.++
T Consensus 539 dqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 539 DQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHHhhhhhhHHHhcC
Confidence 7777777766666666554
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.039 Score=63.80 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=19.4
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 007027 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL 493 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~L 493 (621)
|.++.....-+.+++.++.....|.+..+.++..|
T Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444555555556666666666666666644
No 19
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.06 E-value=0.045 Score=68.63 Aligned_cols=294 Identities=20% Similarity=0.230 Sum_probs=174.6
Q ss_pred hhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch
Q 007027 225 ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (621)
Q Consensus 225 a~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (621)
++..-|++.+...+.-...++..| ..++......-+|+=-..|.++.+++.-..|-.|-+.+|..+.-.-++=
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444 3455566667788888889999999999999999999998888777777
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHhhcCC----------hhHHHHHHHHHHHHHHHHHHHHH-------------------
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLEEQLKESEI------------------- 355 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~----------esEv~sLqkKvksLE~qLdes~e------------------- 355 (621)
..+.+-|-.|-+.++.-+..+..|.+.+ -.|+..|......|--.++..+.
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888877777776651 12333333333333322222222
Q ss_pred ------HHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhh
Q 007027 356 ------RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 429 (621)
Q Consensus 356 ------QL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~ 429 (621)
.|+.++.++ ++++..+...+..+.-.+..|..+..+.......+-..+......+..|+. ++..
T Consensus 807 i~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~e 876 (1822)
T KOG4674|consen 807 IKELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 222222221 334444444455555566666666666666666666666666666666665 4777
Q ss_pred HHHHHHHHHHHHHH--hhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 007027 430 LENQLRDLEIQLQQ--AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 507 (621)
Q Consensus 430 LE~QLKEa~~QLqh--A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l 507 (621)
|+++|+..+.|... ++++.++..- +-+++...+-=+++|+.+|-.|.. ++- .|
T Consensus 877 L~k~l~~~~~~~~~l~~~~~~~d~~~----~~~~Lr~~~eq~~~l~~~L~~a~s-------~i~--------------~y 931 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSKSSNEDATI----LEDTLRKELEEITDLKEELTDALS-------QIR--------------EY 931 (1822)
T ss_pred HHHHHHHhHHHHhhccccchhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHH-------HHH--------------HH
Confidence 77777776665543 3344555544 466666666667766666664443 233 44
Q ss_pred HhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 508 RDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 508 ~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (621)
..-..+++.++..-+.+=+.|.++++.|.+--..=++.|..++-.|+.++..+
T Consensus 932 qe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l 984 (1822)
T KOG4674|consen 932 QEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENL 984 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566655555555555555555544444444444433
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.04 E-value=0.01 Score=64.91 Aligned_cols=127 Identities=10% Similarity=0.169 Sum_probs=75.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHh---HHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 007027 424 TKKVGILENQLRDLEIQLQQAKVSSEA---SQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (621)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEa---s~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~EL 500 (621)
..++..|+.++...+.|+......-.. ...+.......+......|...++.+.....+...++.++.-|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 345555555555555555544443332 22222223445555556666666777777777777777777777777799
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHHHHHHHHHHHHH
Q 007027 501 KNKQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLMMEMVMQLATQR 550 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~t------lKeae~Rak~aE~lV~KL~~Er 550 (621)
+++|..+..+++.+.........++..+ +++.+.|..+....+..+....
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~i~~~~l~~~n~~~ 433 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIKKYIPYFNKQI 433 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9999999888888877766666555544 4555555444444444444333
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.01 E-value=0.017 Score=71.78 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=35.1
Q ss_pred cccccchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHH
Q 007027 204 KSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265 (621)
Q Consensus 204 ~~~mqt~eqqR~iLrMLekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~ 265 (621)
--=|.+++++|.++-=.=+-=.+--.-.++|......-.++...+...+.....|+..+...
T Consensus 272 ad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33388999888776443121133334455555555555566666666666666666555544
No 22
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.89 E-value=0.00075 Score=63.80 Aligned_cols=139 Identities=27% Similarity=0.285 Sum_probs=106.2
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh
Q 007027 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (621)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m 457 (621)
++-|+-+.+.|..|+..+++++..+...+.+.+.++..|.. |+..||.+|..+..+|..++..++.+....+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~- 73 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKS- 73 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-
Confidence 56788899999999999999999999999999999999987 4888999998888888888877777755111
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 007027 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (621)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak 537 (621)
..+ ++..++. -|++||.-...+|+..... +.++..++.
T Consensus 74 ~~E------------------------~l~rriq-------~LEeele~ae~~L~e~~ek-----------l~e~d~~ae 111 (143)
T PF12718_consen 74 NAE------------------------QLNRRIQ-------LLEEELEEAEKKLKETTEK-----------LREADVKAE 111 (143)
T ss_pred hHH------------------------HHHhhHH-------HHHHHHHHHHHHHHHHHHH-----------HHHHHHHhH
Confidence 011 2222333 5555555555555433222 567778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007027 538 LMMEMVMQLATQRELIQKQVYSLTSENKL 566 (621)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~ 566 (621)
-++|-|..|..+++.++..+-.+..+|+.
T Consensus 112 ~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888875
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.88 E-value=0.19 Score=63.48 Aligned_cols=292 Identities=22% Similarity=0.242 Sum_probs=141.7
Q ss_pred HHHHHHhh-----------hhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHH----------HHHHhccch
Q 007027 217 LRMLEKSL-----------ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW----------GRFLEAENS 275 (621)
Q Consensus 217 LrMLekSl-----------a~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~----------er~~EAENa 275 (621)
|.||++.| +|--+|..-+..-.+....+...|++...-...++-.+..+- .|+.--
T Consensus 691 le~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e--- 767 (1822)
T KOG4674|consen 691 LENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQE--- 767 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 67777665 556668888888888888888888888887777776665442 222211
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHH
Q 007027 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKE 352 (621)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLde 352 (621)
.+-|...-..++..+-.+|+..+-.-.-++..+.++++-+..|. ..|.++... ..+++.+++ ..+..++..
T Consensus 768 ~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~---~el~~lk~klq~~~~~~r~l~---~~~~~~l~~ 841 (1822)
T KOG4674|consen 768 LEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELE---RELQKLKKKLQEKSSDLRELT---NSLEKQLEN 841 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---hhhhhHHHH
Confidence 12222333344444445555555555666777777776666665 333333222 122222221 222223333
Q ss_pred HHHHHHHhHhh-------hhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHH--HHHHhhhhHHHHHHhhhhhcCCCCc
Q 007027 353 SEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK--VTQLTDTNLELSEEINFLKGNNDSN 423 (621)
Q Consensus 353 s~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesK--le~LseTNdELerelk~Lesrs~~d 423 (621)
+.-++..+... +...+..++.|+..+..|+..|.-...|..+--++ .+.++.-.+.|..+
T Consensus 842 ~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~----------- 910 (1822)
T KOG4674|consen 842 AQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKE----------- 910 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHH-----------
Confidence 33222221111 11113333344444444444444444444333333 22222222222111
Q ss_pred hhhhhhHHHHHHHHHHHHHH---hhhhhHhHHHHHhhhHHHHH-hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhc-----
Q 007027 424 TKKVGILENQLRDLEIQLQQ---AKVSSEASQEQQSMLYSAIW-DMETLIEDLKSKVSKAESKTESVEEQCIVLS----- 494 (621)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqh---A~asaEas~eqQ~mkysei~-dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Ls----- 494 (621)
.+++..|..+|+-+..+..+ ...+.+.+-.+-.-.|++.. ..++=|+.+..++--.|.|.-..+..|.-|.
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23444444445444433322 22233333222222333222 2223344444444444433333333333333
Q ss_pred ------cchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 495 ------EDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 495 ------e~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
..++.+..+++.+++.++++.....+|+.....+
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~ 1030 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDL 1030 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366888899999999999999999988877776
No 24
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.84 E-value=0.026 Score=67.82 Aligned_cols=254 Identities=20% Similarity=0.169 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHhcc-chHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHH
Q 007027 258 MEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (621)
Q Consensus 258 lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (621)
+|+.|+.|-+.++-++ -.++-|+|.-++-+.+|..+..=|+-... ++. --++| .+++
T Consensus 1494 i~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~---di~-----ra~~L--------------~s~A 1551 (1758)
T KOG0994|consen 1494 IEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKG---DIA-----RAENL--------------QSEA 1551 (1758)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhh---hHH-----HHHHH--------------HHHH
Confidence 4455555555554433 23455666666666666655544432110 000 00111 3566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
..-.++...+..+.+...+.|+.|....-.++.-|....+-|++....|.+++++...|+.++.-++++..+|.+.+..|
T Consensus 1552 ~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1552 ERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777788888888888888877777777888888888999999999999999999999999999999999988888
Q ss_pred hcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc
Q 007027 417 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 496 (621)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~ 496 (621)
+......+.-+...++-.--++.+.+.|+.-.+.-+. .|+.+.+ ++++--.-..-|..|||.
T Consensus 1632 k~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~----~~~~~~~---l~~~r~~g~~~ar~rAe~----------- 1693 (1758)
T KOG0994|consen 1632 KHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQK----YYELVDR---LLEKRMEGSQAARERAEQ----------- 1693 (1758)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHhhcchhHHHHHHH-----------
Confidence 8765433333333333333333222222222221111 3333332 223111222233333332
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007027 497 NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 565 (621)
Q Consensus 497 N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK 565 (621)
|+.+.+.| -...++|..-+|+++.-+.--++-+...+.++.+|+..+-++....+
T Consensus 1694 ----------L~~eA~~L----l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~ 1748 (1758)
T KOG0994|consen 1694 ----------LRTEAEKL----LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHIN 1748 (1758)
T ss_pred ----------HHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22222222 23334555566677666666666666777777777777766654443
No 25
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.82 E-value=0.027 Score=65.80 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhh---------HHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhc
Q 007027 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQ---------IVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (621)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq---------~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (621)
+.+++.--|.+.|+|...=|+..--.+..++= +++.+=+-+-+-+.-++.-.--.+++|.+.++.+--|.-
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667777888888888877766555555442 122222222222222222222334444444444433333
Q ss_pred C---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHH----HHHHHHHh
Q 007027 331 T---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA----EEKVTQLT 403 (621)
Q Consensus 331 s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA----esKle~Ls 403 (621)
+ .++|...||.-+..++.++++.+..|.+.++.++.-+.++++-.+-|.-.=+++-..-..+..- .+|++++.
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~ 193 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEAN 193 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHH
Confidence 3 4677777777777777777777777777777777766677666666665555554443333332 23444444
Q ss_pred hhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH---HHHhHHHHHHHHhhhhhhhh
Q 007027 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS---AIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 404 eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys---ei~dme~vIEdLk~Kl~rAE 480 (621)
.-|..+++.++-++......++|. ++=.+ .||-..-+-....|.+--+. .++---.+|+++..++.-
T Consensus 194 ~en~~le~k~~k~~e~~~~nD~~s-le~~~-------~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~-- 263 (1265)
T KOG0976|consen 194 REKKALEEKLEKFKEDLIEKDQKS-LELHK-------DQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQA-- 263 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHH-HHHHH-------HHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHH--
Confidence 444444455555555433222221 11111 11111111111111111111 111111344433333321
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 481 ~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (621)
-+...|.|-.-|--.|.-|..||+...-.++.+..-|+...+---...-+++.-+++..--+++|..++-+|.-.|.-.
T Consensus 264 -sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 264 -SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334555555555667788888888888888888888777666666666666667777777777777776666666666
Q ss_pred HHhhhHHHHHHhhc
Q 007027 561 TSENKLLVEKLQYS 574 (621)
Q Consensus 561 keenK~L~ekld~t 574 (621)
+.+-..+.+++...
T Consensus 343 rrk~egfddk~~eL 356 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNEL 356 (1265)
T ss_pred HHhhcchhHHHHHH
Confidence 66666666655544
No 26
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.82 E-value=0.0046 Score=61.96 Aligned_cols=184 Identities=19% Similarity=0.297 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
+.+|.+|..++..||.+++.+++.+..|..++++.+. .+..|+++.+.+++.+...+..+..|-.--+.+-.-
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK 82 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRK 82 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777766522 333455555555554444443333332222222222
Q ss_pred hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhh---hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 007027 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (621)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~---asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (621)
-++--+.|-++++.=-..++|++.=|.++++...++.+-. -+...+.++-+-..+.- ...|..|-.|+--|++|
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~---e~~ik~ltdKLkEaE~r 159 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKY---EEELKELTDKLKEAETR 159 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHHhhhhhh
Confidence 2233344444444322235566666666665554444432 22233333111122222 23444444788899999
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 007027 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (621)
Q Consensus 483 aE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (621)
|+.+|-.+.-|-.+=-+|+..+.....+-.++..-|+
T Consensus 160 AE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 160 AEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999988884444444444444444444444433333
No 27
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.74 E-value=0.13 Score=57.65 Aligned_cols=330 Identities=18% Similarity=0.222 Sum_probs=160.9
Q ss_pred hhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHHHHhhhhHHHHhhhhHHhhhcccccc
Q 007027 228 LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAEN-----SAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (621)
Q Consensus 228 ldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAEN-----a~EvL~g~skel~gkLq~~qf~L~as~~ 302 (621)
.+.-+.|...+.+.++|+.||..+..+...-.+.++..--|+-+.+. ++...+-.+.....+....-..|...-.
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~ 137 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSVKQ 137 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677789999999999998887777777776666555554432 1222222223333333333333332221
Q ss_pred chhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH-------------
Q 007027 303 RESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE------------- 369 (621)
Q Consensus 303 REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~------------- 369 (621)
-=.-++.-+.++. ..|+.++.+.... .+-...-.+++..|-.++...++-|..+......++.
T Consensus 138 EL~~lr~e~~~~~---~~k~~A~~~aeea-~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~ 213 (522)
T PF05701_consen 138 ELEKLRQELASAL---DAKNAALKQAEEA-VSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDA 213 (522)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111121111 2344555544443 3334445567777777777777777666543333211
Q ss_pred -----HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCC----chhhhhhHHHHHHHHHHH
Q 007027 370 -----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQ 440 (621)
Q Consensus 370 -----EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~----deEK~~~LE~QLKEa~~Q 440 (621)
++..-+..++.|+.++ +.+...+.|+...+.-...|..+++.....-.. ...+...+...|.-....
T Consensus 214 ~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~E 289 (522)
T PF05701_consen 214 EEWEKELEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKE 289 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHH
Confidence 2222333333333333 233333444444444344444444433331000 011222233334444444
Q ss_pred HHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 007027 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (621)
Q Consensus 441 LqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (621)
|..++.........-+.+...+..+..=++..|..+.+...|...+...+. .|+.+|.-+++.+........+
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~-------~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVS-------SLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-------hHHHHHHHHHHHHHHHHhhhcc
Confidence 445544444443323333444444444445555566666666666666666 8888888888888776665554
Q ss_pred HhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 521 ANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 521 A~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
+...-... +.++-.-+..+..=+.++..+++.....|.+...++.....++.
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43221111 23333334444444555555555555555555555554444443
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=97.74 E-value=0.16 Score=58.74 Aligned_cols=8 Identities=0% Similarity=0.522 Sum_probs=3.4
Q ss_pred cCCccccc
Q 007027 74 GDDLETLV 81 (621)
Q Consensus 74 ~~~~E~~~ 81 (621)
-.+|..+.
T Consensus 134 Qg~~~~~~ 141 (880)
T PRK03918 134 QGEIDAIL 141 (880)
T ss_pred ccchHHHh
Confidence 34444443
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.63 E-value=0.2 Score=56.85 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchh----hhhhHHHHHHHHHHHHHHhh
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTK----KVGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deE----K~~~LE~QLKEa~~QLqhA~ 445 (621)
......-.+..|++++-.++++++.+..+...+.+-- +.+...++|.+++-. -+..|-.||.++..+|.+++
T Consensus 277 ~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~ 352 (546)
T PF07888_consen 277 QAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGR 352 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555567788888888888888887776654432 222223333322211 13444555555555554444
Q ss_pred hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 007027 446 VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (621)
Q Consensus 446 asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~Ra 483 (621)
+ .-.++++. +-..+.-...-|++|+..+.+++...
T Consensus 353 ~--q~~qEk~~-l~~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 353 S--QWAQEKQA-LQHSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred H--HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 1 12222222 12223333345777777777776544
No 30
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.45 E-value=0.3 Score=55.56 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhh
Q 007027 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (621)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl 476 (621)
+..++...+.||+.+.....++..+=..+-.+++++-++=+-.-+++
T Consensus 281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666665544455556666655543333333
No 31
>PRK01156 chromosome segregation protein; Provisional
Probab=97.42 E-value=0.46 Score=55.76 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=13.5
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhh
Q 007027 146 MEKKLHDCEGSLKESQEHVSELKMQS 171 (621)
Q Consensus 146 ~~~kL~~~~~sLkq~~e~~~ei~~qs 171 (621)
++..|.+....++.....+..++.+.
T Consensus 195 ~e~eL~~~~~~i~el~~~~~~l~~~i 220 (895)
T PRK01156 195 SNLELENIKKQIADDEKSHSITLKEI 220 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555554444
No 32
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.6 Score=56.95 Aligned_cols=313 Identities=18% Similarity=0.179 Sum_probs=183.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhh-----hHHHHhhhhHHhhhccccccchhHHHHHHh-hHHH---H
Q 007027 247 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI-----SKEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIE---Q 317 (621)
Q Consensus 247 KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~-----skel~gkLq~~qf~L~as~~REsel~sKL~-~~~e---q 317 (621)
++.+++.|+..||-.-.. -..|+..+|-+=.+++. .-+...|+-..+..+.+..--.-+...|.. .+-+ .
T Consensus 289 ~~k~~e~ek~~lE~~k~~-al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k 367 (1293)
T KOG0996|consen 289 RVKLVEKEKKALEGPKNE-ALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEK 367 (1293)
T ss_pred HHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHH
Confidence 455677888888876554 45688888865544443 222344444444444443332233333332 1111 1
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 007027 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (621)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (621)
.+..+..+......-...+.++++|.+.+|.+--.-+++|.++..+....+.++-...+.+.+++-..+++..-.+.-.+
T Consensus 368 ~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ 447 (1293)
T KOG0996|consen 368 NEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQT 447 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHH
Confidence 11111112211111133666888888888888888888888888777777777777777777777777777776666666
Q ss_pred HHHHHhhh----hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 007027 398 KVTQLTDT----NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (621)
Q Consensus 398 Kle~LseT----NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk 473 (621)
+...|++- +-+|...+..|+.++....++...+|+.|.-...|+..|+.=...+.-+..++......-..=+++||
T Consensus 448 ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 448 EIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655544 44455556667777776777888888888887778888777666666555555555555555666777
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007027 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELI 553 (621)
Q Consensus 474 ~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrL 553 (621)
++|....++.+ +..-+|.-+ ...+..-.++-..--|++..-.+....+.++|..-|+|+
T Consensus 528 ~~L~~~~~~~~--------------e~~~~l~~~-------k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrv 586 (1293)
T KOG0996|consen 528 GKLLASSESLK--------------EKKTELDDL-------KEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRV 586 (1293)
T ss_pred HHHHHHHHHHH--------------HHHHHHHHH-------HHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776554311 222233333 233333333333334555555566666777777777666
Q ss_pred HH---HHHHHHHhhhHHHH--HHhhcCCCCcee
Q 007027 554 QK---QVYSLTSENKLLVE--KLQYSGKSSSAT 581 (621)
Q Consensus 554 e~---ql~s~keenK~L~e--kld~t~~~~~~~ 581 (621)
+. .+++...+|+.|.. .++....-+.|+
T Consensus 587 eE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~ 619 (1293)
T KOG0996|consen 587 EEAKSSLSSSRSRNKVLDALMRLKESGRIPGFY 619 (1293)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHcCCCCccc
Confidence 54 56677888888733 344444444443
No 33
>PRK11637 AmiB activator; Provisional
Probab=97.40 E-value=0.21 Score=54.20 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=69.1
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhH
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (621)
++++.+|++...++.... .++..+++++..++.+++..+.++..+..++...+.++..+++.|..++.+
T Consensus 43 ~~~~~~l~~l~~qi~~~~-----------~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKE-----------KSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666665555433 445556667777777777777777777777777777888888888888888
Q ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHHH--HhhhhhcC
Q 007027 385 LYGAESRAESAEEKVTQLTDTNLELSE--EINFLKGN 419 (621)
Q Consensus 385 l~rAEsRa~tAesKle~LseTNdELer--elk~Lesr 419 (621)
+..++.++......+...-.+.-..-. -+.+|-+.
T Consensus 112 I~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vLl~a 148 (428)
T PRK11637 112 IAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSG 148 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHhcC
Confidence 888888877777776665544443211 24455554
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.34 E-value=0.6 Score=55.23 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=121.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA-------CFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 324 ~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~a-------klEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
+++++...+++-+.++-+=+..+|+++.-+.....-+.+ .++...+....|.+++.-++-+|.+..+-+....
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555444333333 3344456777888999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHhhhhhcCCCCchhh-------hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHH
Q 007027 397 EKVTQLTDTNLELSEEINFLKGNNDSNTKK-------VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI 469 (621)
Q Consensus 397 sKle~LseTNdELerelk~Lesrs~~deEK-------~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vI 469 (621)
++|.-++..+.+...-+.+|+..-.+-+.+ ++.|-..|.+...|+..+-+..+...+.-+-.-.+|.+|-...
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~ 387 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDML 387 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999877777776642222222 3445556666677777666666666543222222333322222
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH---------HHHHHHHHHhHHHHhhHHH
Q 007027 470 EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK---------ILESSLNRANIEKAASAKE 531 (621)
Q Consensus 470 EdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lk---------sLE~sl~kA~q~k~~tlKe 531 (621)
+--..|+.+.-.+.|+++.... +=..+|.....+|. .+-..+++|...++...+.
T Consensus 388 d~~e~ki~~Lq~kie~Lee~l~-------ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 388 DKKERKINVLQKKIENLEEQLR-------EKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 2222566666666666555544 55555555555555 5667777888777777333
No 35
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.18 E-value=0.53 Score=56.25 Aligned_cols=299 Identities=22% Similarity=0.272 Sum_probs=155.7
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (621)
||.-||.-.|..-.|=|.||--++-.++.+|-.-+ ...|+.--|.+|.--.+|+.-=.
T Consensus 235 dLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE----------------------fkSkim~qqa~Lqrel~raR~e~ 292 (1243)
T KOG0971|consen 235 DLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE----------------------FKSKIMEQQADLQRELKRARKEA 292 (1243)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888888875433 22333333333332222222111
Q ss_pred HHHhhHHHHHhh---------------hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhhHHHHH
Q 007027 309 SKLGDFIEQLKA---------------KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF-QTSQEQLN 372 (621)
Q Consensus 309 sKL~~~~eqL~~---------------k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~akl-EesE~EVa 372 (621)
.-+...-++... |+.+=++.++- --||.++++++..||-+|.-.....++-..-. -.+--+.-
T Consensus 293 keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesL-Q~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 293 KEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESL-QQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Confidence 111111111110 12222222221 24555556666666555554444333221110 00122556
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHH
Q 007027 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (621)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (621)
-++--+.-||+-+-|-.--...+..---.+.+-..-.+.++..|+...-.-..+++.+|.++...+.|+.-| ..||+.+
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA-lGAE~MV 450 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA-LGAEEMV 450 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHH
Confidence 677777888888776433333222222222222222222344443322112357889999999988888655 5678887
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh----HHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFE----LKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~E----LeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
+|...+--.+-++-...||=.++++-++. ...+ |-|.|.+ |-+||..+.+-.+.|+..-+.| .++
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee----~~EQ---L~Esn~ele~DLreEld~~~g~~kel~~r~~aa----qet 519 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEE----MNEQ---LQESNRELELDLREELDMAKGARKELQKRVEAA----QET 519 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHH
Confidence 76555544555555555555555554442 2222 3355554 4455555544445554333322 233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (621)
+=|-..-..-+-++|.+|+..+..+-||..+..+
T Consensus 520 ~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ssee 553 (1243)
T KOG0971|consen 520 VYDRDQTIKKFRELVAHLQDQLQELTDQQESSEE 553 (1243)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 4444444555678999999999999998766543
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.11 E-value=1.2 Score=54.54 Aligned_cols=233 Identities=21% Similarity=0.301 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHHhhhhhhh-----hhHhhHHHhhhHHHHhhhhhhhh---HH---HHHHHHHHHHHHHHHHhccchHHH
Q 007027 210 ADQQRHILRMLEKSLARELD-----LEKKISELNQNEEQLKLKLHHTE---QV---AFRMEEAAEVVWGRFLEAENSAEV 278 (621)
Q Consensus 210 ~eqqR~iLrMLekSla~eld-----LEkkL~es~~~eeeLk~KL~~~e---qe---~~~lEE~~~~~~er~~EAENa~Ev 278 (621)
-++.++-++-|+..+..+.. +-........-...|+.++++.. ++ ....+.+.+..-+..-.+......
T Consensus 415 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (1201)
T PF12128_consen 415 REQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEE 494 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778877765433 22222222223334444444322 22 222333344445555556666666
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhh-hhHHHHHhhcC--------------------------
Q 007027 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST-------------------------- 331 (621)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s-------------------------- 331 (621)
+......+....+..+..|.....+=.+++..+.....+|.. +++-+.=|...
T Consensus 495 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 495 LQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCCHHHhcCCCCCCee
Confidence 666777777777777777777776667777777777777763 23322222111
Q ss_pred -------------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhH
Q 007027 332 -------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 392 (621)
Q Consensus 332 -------------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa 392 (621)
..++.....+ .|+.++.....+++.+....++.+..+...+..+..++.++..++..+
T Consensus 575 ~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~ 651 (1201)
T PF12128_consen 575 VEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQEL 651 (1201)
T ss_pred cCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122221111 566666667777777777777778888888999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhcC-CCCchhhhhhHHHHHHHHHHHHHHhh
Q 007027 393 ESAEEKVTQLTDTNLELSEEINFLKGN-NDSNTKKVGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 393 ~tAesKle~LseTNdELerelk~Lesr-s~~deEK~~~LE~QLKEa~~QLqhA~ 445 (621)
.++..++..+-.....+..+..-.... -..-..++..++.+++..+.+++...
T Consensus 652 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 652 KQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888777777765544332 11113344555555555544444433
No 37
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.09 E-value=0.38 Score=58.56 Aligned_cols=198 Identities=19% Similarity=0.282 Sum_probs=121.5
Q ss_pred hhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHH----------HhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ----------KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~le----------kl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (621)
++...+--++-...+.-.++++|+.+.-+.+--...++ ++-+...-+...++..+.+|+..+...+..|.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555666666655555444333333 33333456667777777777777777776666
Q ss_pred HhHhhhhh----hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHH
Q 007027 359 NANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 434 (621)
Q Consensus 359 ~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QL 434 (621)
.-..++.- ..+++-.++-....+..++-+|.++++.|++.+..|.......-+.+-.|++ +|
T Consensus 465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~--------------~L 530 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKG--------------KL 530 (1293)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 66555533 3668888888888888889999999999999888887766555443333333 23
Q ss_pred HHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 007027 435 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (621)
Q Consensus 435 KEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL 514 (621)
- ++.+..++ +-..+.+....|.++|.++..++...+.+-..-. .|..-+.-++.++..+
T Consensus 531 ~----------~~~~~~~e----~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~-------~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 531 L----------ASSESLKE----KKTELDDLKEELPSLKQELKEKEKELPKLRKEER-------NLKSQLNKLRQRVEEA 589 (1293)
T ss_pred H----------HHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 2 22223334 5667888888888888887777665544444444 4445555555555555
Q ss_pred HHHHHHH
Q 007027 515 ESSLNRA 521 (621)
Q Consensus 515 E~sl~kA 521 (621)
-.++...
T Consensus 590 ks~~~~~ 596 (1293)
T KOG0996|consen 590 KSSLSSS 596 (1293)
T ss_pred HHHHHhh
Confidence 4444433
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.05 E-value=1.1 Score=52.97 Aligned_cols=361 Identities=16% Similarity=0.222 Sum_probs=198.3
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh-cccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhh
Q 007027 148 KKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY-FIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLAR 226 (621)
Q Consensus 148 ~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~ 226 (621)
..+.+++.-+..++..+..--++...|...+.- +...+. ++.+. + =..++.|=+-.|+
T Consensus 183 ~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~---------------~a~t~---a--lq~~ie~Kd~ki~- 241 (775)
T PF10174_consen 183 RRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERD---------------DAETE---A--LQTVIEEKDTKIA- 241 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCC---------------chhHH---H--HHHHHHHHHHHHH-
Confidence 456666666666666666665655555443322 111111 11111 0 1356677777765
Q ss_pred hhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHH--HHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch
Q 007027 227 ELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV--WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (621)
Q Consensus 227 eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~--~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (621)
.||+.|.++..-..-|+-++...+.+..++.-..+.. .-++. -.|+.-+...|+....-=
T Consensus 242 --~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~m----------------K~k~d~~~~eL~rk~~E~ 303 (775)
T PF10174_consen 242 --SLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAM----------------KSKMDRLKLELSRKKSEL 303 (775)
T ss_pred --HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHH----------------HHHHHHHHHHHHHHHHHH
Confidence 4788888776666777777766666666663333222 22221 111222222232222222
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHH
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESL 381 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelL 381 (621)
-.+..+|+...++...-..-++.|..+ ++.+..-||--+-.|--.|++...++....+.++..+++.+.+...|.++
T Consensus 304 ~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l 383 (775)
T PF10174_consen 304 EALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL 383 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233445555555544444444445444 45566666667777777788888999999999999999999999999999
Q ss_pred HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-----Cchhhh-hhHHHHHHHHHHHHHH---hhhhhHhHH
Q 007027 382 KESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-----SNTKKV-GILENQLRDLEIQLQQ---AKVSSEASQ 452 (621)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-----~deEK~-~~LE~QLKEa~~QLqh---A~asaEas~ 452 (621)
++.++..+.++.....|++-|..+.-+=.+.+..++.|-. ..++.+ ..||.-+.+.+-...+ ...- +..
T Consensus 384 ~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~--~e~ 461 (775)
T PF10174_consen 384 RDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRER--AEK 461 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 9999999999999999988888877666666555555422 123333 5555555544311111 1100 011
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHH-------HhhHHHHHHHHHHHhHHH
Q 007027 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM-------RDKIKILESSLNRANIEK 525 (621)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l-------~~~lksLE~sl~kA~q~k 525 (621)
+ +.+.+.....-+++|+.++...+....-.+...- .+.++.+.| ++.+++|++.+++...+=
T Consensus 462 e----~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~-------~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~ 530 (775)
T PF10174_consen 462 E----RQEELETYQKELKELKAKLESLQKELSEKELQLE-------DAKEEASKLASSQEKKDSEIERLEIELEKKREKH 530 (775)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHH
Confidence 1 2233344444445555555544443333333333 333333333 345566666665554443
Q ss_pred Hhh----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 526 AAS----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 526 ~~t----------------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (621)
... .-.++..+.....-+.+-..|||||-+-|...
T Consensus 531 ~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~ 581 (775)
T PF10174_consen 531 EKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREA 581 (775)
T ss_pred HHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 22223333444445667788899988766553
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=1.4 Score=53.39 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=59.2
Q ss_pred hhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc
Q 007027 233 KISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG 299 (621)
Q Consensus 233 kL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a 299 (621)
.+++++.-.+..++|+.|...|.+..+-.......+...-.+.+.++...-..+-.+|+++-|+-++
T Consensus 407 ~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~ 473 (1174)
T KOG0933|consen 407 TLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQ 473 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 3556666678889999999999999999999999999999999999999999999999999888763
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.99 E-value=1.1 Score=54.39 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=24.3
Q ss_pred HhhhHHHHHHhhcCCCC--ceeeeccCCCCCcceeeccCC
Q 007027 562 SENKLLVEKLQYSGKSS--SATMYNAGDTDDKELLINPTN 599 (621)
Q Consensus 562 eenK~L~ekld~t~~~~--~~~~~~~~~~~~~~~~~~~~~ 599 (621)
.....|-.=++..+.+. |.++...+.+-+-+..-+|.+
T Consensus 531 ~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~ 570 (1074)
T KOG0250|consen 531 KDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGY 570 (1074)
T ss_pred hhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCC
Confidence 44555555566666664 666667777777666666665
No 41
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.87 E-value=0.00025 Score=83.06 Aligned_cols=180 Identities=23% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (621)
.+++.++-+..++++++.++..+....+.....+..+++++..|..++..+...+..|.--...+..-.+++...+..|-
T Consensus 571 e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~ 650 (859)
T PF01576_consen 571 EAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELT 650 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666677888899999999999999988888888888888888888888777776
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhh--------------------hHH-HHHhHHHHHHHHhhhh
Q 007027 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM--------------------LYS-AIWDMETLIEDLKSKV 476 (621)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~m--------------------kys-ei~dme~vIEdLk~Kl 476 (621)
+.+.+-..-..-||..+......|..+...+..+.++... ... .=+.++.-|.||+.++
T Consensus 651 ~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl 730 (859)
T PF01576_consen 651 SQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARL 730 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543333333445555555555555554444444331110 111 1123345666777777
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHH
Q 007027 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAK 530 (621)
Q Consensus 477 ~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlK 530 (621)
.-+|.-+-..= .--++.+.+++..||..|+.-..+...+.|
T Consensus 731 ~e~E~~~~~~~-------------k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k 771 (859)
T PF01576_consen 731 EEAEQSALKGG-------------KKQIAKLEARIRELEEELESEQRRRAEAQK 771 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHhhhccc-------------ccHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665322211 123457788888888888776666666533
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.82 E-value=0.75 Score=47.27 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHR----TKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~R----ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (621)
.+.+|++.++..+.+|+..++.....+... +.+.+.+ ..-....|..|..++..+..++.....+|..|.
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777666666555 3333322 344566677788888888888887777777763
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=2.5 Score=51.37 Aligned_cols=279 Identities=23% Similarity=0.270 Sum_probs=151.3
Q ss_pred ccccccccccchHHHHHHHHHHHH----------hhhhhhhhhHhhHHHhhh----HHHHhhhhhhhhHHHHHHHHHH--
Q 007027 199 SNINGKSKMKNADQQRHILRMLEK----------SLARELDLEKKISELNQN----EEQLKLKLHHTEQVAFRMEEAA-- 262 (621)
Q Consensus 199 ~~~~~~~~mqt~eqqR~iLrMLek----------Sla~eldLEkkL~es~~~----eeeLk~KL~~~eqe~~~lEE~~-- 262 (621)
|++--..+|.+.| ||-|+|- --|-+-.+|||=.-.+++ .+++.=+|.-.-+|+..+=|-.
T Consensus 148 GrITkVLNMKp~E----ILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~ 223 (1174)
T KOG0933|consen 148 GRITKVLNMKPSE----ILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKI 223 (1174)
T ss_pred ccchhhhcCCcHH----HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 5666778999887 8999984 344555555544333332 3444445544455544332222
Q ss_pred ---HHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccc------cccchhHHHHHHhhHHHHHhhhhHHHHHhhcC--
Q 007027 263 ---EVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNG------SLQRESELKSKLGDFIEQLKAKDMVLQKLEST-- 331 (621)
Q Consensus 263 ---~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a------s~~REsel~sKL~~~~eqL~~k~~~lekl~~s-- 331 (621)
.+-..|+..| --++++ +..-..+...++..+.+.+..-+..++.++..
T Consensus 224 ~~dle~l~R~~ia---------------------~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ik 282 (1174)
T KOG0933|consen 224 NRDLERLSRICIA---------------------YEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIK 282 (1174)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1111222211 111111 12223445555555555555444444333332
Q ss_pred -----C----hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 007027 332 -----K----NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (621)
Q Consensus 332 -----~----esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (621)
+ .-++.+|..++.++-...-.....+...+..+..-+.++..|...|.+++..+..-+.+....+.-...+
T Consensus 283 ei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ 362 (1174)
T KOG0933|consen 283 EIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKL 362 (1174)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2 2334556666655555555555555566666655577888888888888888887777776654444433
Q ss_pred hhhhHHHH-------HHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 007027 403 TDTNLELS-------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (621)
Q Consensus 403 seTNdELe-------relk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~K 475 (621)
-++-.+.. ..+..|..--++.++--..++.||..++.++-.|....+.+.- .+.|....+...+++
T Consensus 363 ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~-------k~e~~~~elk~~e~e 435 (1174)
T KOG0933|consen 363 KEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKL-------KLEHLRKELKLREGE 435 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhH
Confidence 33332222 2233333322223334678999999998776666655555443 233333334333333
Q ss_pred hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 007027 476 VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (621)
Q Consensus 476 l~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (621)
+ ...+..+....++|..+.+-++.|..++....-
T Consensus 436 ~--------------~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~ 469 (1174)
T KOG0933|consen 436 L--------------ATASAEYVKDIEELDALQNEVEKLKKRLQSLGY 469 (1174)
T ss_pred h--------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 333444448888999998888888887776543
No 44
>PRK01156 chromosome segregation protein; Provisional
Probab=96.67 E-value=2.1 Score=50.39 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 154 EGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 154 ~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
..-+.+.+..+.+++.+...+...+..+.
T Consensus 415 ~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 415 NVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665565555554433
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.64 E-value=0.23 Score=57.88 Aligned_cols=219 Identities=18% Similarity=0.281 Sum_probs=120.3
Q ss_pred HHHHHHHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh
Q 007027 216 ILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 295 (621)
Q Consensus 216 iLrMLekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf 295 (621)
...=||.-|.+ |-..|..+|++|.||+.++...++- +| .+++++..++..-..+|.
T Consensus 419 a~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~~------------Er---------~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 419 AISRLEADVKK---LRAELQSSRQSEQELRSQISSLTNN------------ER---------SLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhcccc------------ch---------HHHHHHHHHHHHHHHHHH
Confidence 34458888888 8889999999999999998754431 11 234444444444333333
Q ss_pred hccccc-cchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------------
Q 007027 296 NLNGSL-QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN------------- 361 (621)
Q Consensus 296 ~L~as~-~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~------------- 361 (621)
-+.... .|+.| +.++.+|+- -+...+++-..+|.||.+-.-+-..+.
T Consensus 475 Kl~~L~~aRq~D-----Kq~l~~LEk--------------rL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 475 KLQNLVQARQQD-----KQSLQQLEK--------------RLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhc
Confidence 222221 12222 112222221 123445555566666655443322111
Q ss_pred --hhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHH-HHH
Q 007027 362 --ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLE 438 (621)
Q Consensus 362 --aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLK-Ea~ 438 (621)
..-|.+.....+|++.|.-|.-++...|++...++.++..+-.-.-|...+...|-+-=.+--||-..||+.|. |.+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr 615 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR 615 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 11122355778888888888888888888888888888655554222222222222211112346677888776 333
Q ss_pred HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 007027 439 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (621)
Q Consensus 439 ~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~r 478 (621)
+.|.==.|. .++.+|....-..+..++.-|.|||.|+..
T Consensus 616 iKldLfsaL-g~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 616 IKLDLFSAL-GDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322233 344455666666777777888888887653
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.61 E-value=3.5 Score=52.16 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
...++.+-..+..+++.|.++..+..+..-.+-+.+++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL 591 (1486)
T PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQL 591 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888888888777777776666655
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.55 E-value=2 Score=48.69 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
++++..+++++......+... .+..|.+.++....+|.+|--.++--...-...+.........+..+.+.|.++..+
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555444433 345555555555666666666666666666667777777788888888889999999
Q ss_pred hhhhhcC---CCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 007027 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (621)
Q Consensus 413 lk~Lesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme 466 (621)
+..|..+ +-.+.+++..++.+|++...++......+..... -|+.+.+..
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~----~ysel~e~l 385 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEI----AYSELQEEL 385 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CHHHHHHHH
Confidence 8888776 2335677888888888887666654433333322 355544433
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.49 E-value=2.1 Score=48.24 Aligned_cols=217 Identities=18% Similarity=0.266 Sum_probs=127.3
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 007027 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (621)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (621)
++.+++.+|+. ++. ..-..+++.|..+....+.|+..+-....-.. ++..+-.....|.+..+...
T Consensus 197 eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~-----------kL~~a~~~l~~Lq~El~~~~ 262 (522)
T PF05701_consen 197 EAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEAAKDLES-----------KLAEASAELESLQAELEAAK 262 (522)
T ss_pred HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 44556666653 332 23346788888888888888877744333333 44444444555665555444
Q ss_pred h-hhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 007027 288 G-RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (621)
Q Consensus 288 g-kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (621)
. ++.... ......+.+...|.+....|+.-...|++.. +|+..|+..+.+|..+|......+...+.+...
T Consensus 263 ~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 263 ESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 222211 3456667778888888888888888888764 678899999999999999888888888777666
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
....|+.|+..+.-++.++.-+...-..+-.....+..+-.++..+....+. .....-..+..++..++++++
T Consensus 335 a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~-------ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 335 ASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK-------EAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555555555333332222222222333333333333222221 122222235555666666666
Q ss_pred hhHhHHH
Q 007027 447 SSEASQE 453 (621)
Q Consensus 447 saEas~e 453 (621)
.+.+...
T Consensus 408 ~i~t~E~ 414 (522)
T PF05701_consen 408 AIKTAEE 414 (522)
T ss_pred HHHHHHH
Confidence 6666655
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=96.49 E-value=3.5 Score=50.80 Aligned_cols=263 Identities=16% Similarity=0.215 Sum_probs=145.2
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhHHHhhh--HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhh
Q 007027 213 QRHILRMLEKSLARELDLEKKISELNQN--EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRF 290 (621)
Q Consensus 213 qR~iLrMLekSla~eldLEkkL~es~~~--eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkL 290 (621)
-+.-||-|=++|-.=|.=.+.=-++.+. ++=|.+-|-.+-+ .++..+..|-+|...--|. +++....+.=+.|-
T Consensus 1469 s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpe---qi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPE---QIQQLTGEIQERVASLPNV-DAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHH---HHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHH
Confidence 3444565555555444333332222221 2335555544444 3455566777777666665 44555667778888
Q ss_pred hHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 007027 291 QIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ 370 (621)
Q Consensus 291 q~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~E 370 (621)
..+|..-+.+..+=.+++.+-++-.+.|+.-+.+....... ++....-+...++.|.+.++....|...+-.+-..
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~a----i~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~ 1620 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDA----IQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQ 1620 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888889988888888888766665544432 11122233444445555555555554444444556
Q ss_pred HHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhh-hhHHHHHHHHHHHHHHhhhhhH
Q 007027 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKV-GILENQLRDLEIQLQQAKVSSE 449 (621)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~-~~LE~QLKEa~~QLqhA~asaE 449 (621)
++.|+++++.||-+....-.-|.+|+.-.--+...|..-+..++.|... -+++ .++|+....+..--+.|...-.
T Consensus 1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~----~~~~~~l~~~r~~g~~~ar~rAe~L~~ 1696 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKY----YELVDRLLEKRMEGSQAARERAEQLRT 1696 (1758)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 7777777777776665544444444444444444444444444433322 1222 3344443333211122222222
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 450 as~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
.+.. ++-..-+|+.-+.||..++++-+-+++.....+.
T Consensus 1697 eA~~----Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~ 1734 (1758)
T KOG0994|consen 1697 EAEK----LLGQANEKLDRLKDLELEYLRNEQALEDKAAELA 1734 (1758)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 2222 4555666777788888888888877666555555
No 50
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=2.6 Score=48.44 Aligned_cols=317 Identities=18% Similarity=0.166 Sum_probs=158.2
Q ss_pred hhhhhhhhhHhhHHHhhhHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 007027 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (621)
Q Consensus 223 Sla~eldLEkkL~es~~~eeeLk~KL~~~eq----e~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (621)
|--+=|+.+-. +...+.+|+.||...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.|
T Consensus 204 ~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~n 276 (581)
T KOG0995|consen 204 SYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVN 276 (581)
T ss_pred HHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHH
Confidence 33444444444 34456677777654444 23334444444444443 333344444445555555555554
Q ss_pred ccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHhHH
Q 007027 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE---IRLQNANACFQTSQEQLNEMD 375 (621)
Q Consensus 299 as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~---eQL~~A~aklEesE~EVaaLe 375 (621)
-..--.+.+++|-..-...|+....+++. +++|...|+.+...|-++++.-. ++....+...++-..++..++
T Consensus 277 K~~~y~~~~~~k~~~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 277 KFQAYVSQMKSKKQHMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333322222222222222221 46777777777776666655322 112222222222222232222
Q ss_pred HHHHHH----HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH-hhhhhc--CCC----Cc----hhhh-hhHHHHHHHHHH
Q 007027 376 NFIESL----KESLYGAESRAESAEEKVTQLTDTNLELSEE-INFLKG--NND----SN----TKKV-GILENQLRDLEI 439 (621)
Q Consensus 376 rrIelL----KEel~rAEsRa~tAesKle~LseTNdELere-lk~Les--rs~----~d----eEK~-~~LE~QLKEa~~ 439 (621)
..+..| .+.=..++.+...-+.+...+-..+..+... .....| ++- .. -..+ -.|..-+.+...
T Consensus 353 ~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~ 432 (581)
T KOG0995|consen 353 SELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISE 432 (581)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHH
Confidence 222221 2222345556666677777777777777766 555555 211 00 0011 011111222222
Q ss_pred HHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHH
Q 007027 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (621)
Q Consensus 440 QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~ 519 (621)
++..|+. . -.-+-+.++.|.++|++++.-+..-+.++-.++++|-..-+++- ++..--+.-++.||.++.
T Consensus 433 ~~~~~~~---~----~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~e---ee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 433 ELHEAEN---E----LETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAE---EEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 2221111 1 11144577788888998888888888888888888886555444 566667777888888877
Q ss_pred HHhHHHHhhHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 007027 520 RANIEKAASAKEVNHRTKLMM----EMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 520 kA~q~k~~tlKeae~Rak~aE----~lV~KL~~ErdrLe~ql~s~ 560 (621)
..+..=....++++.+-+-++ ++|.-..-+|..+..||..+
T Consensus 503 ~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 503 NLKLVLNTSMKEAEELVKSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555666666654443 45555556666666665544
No 51
>PRK11637 AmiB activator; Provisional
Probab=96.41 E-value=1.8 Score=47.06 Aligned_cols=34 Identities=3% Similarity=0.064 Sum_probs=21.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~k 561 (621)
.+..+....+-....+.+|..+..+|...|..+.
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555566777777777777776654
No 52
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.31 E-value=1.6 Score=48.11 Aligned_cols=36 Identities=6% Similarity=0.194 Sum_probs=26.7
Q ss_pred HhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 147 EKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 147 ~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
..++...+..+.+.+.++..+..+.+.|++.+..+.
T Consensus 173 k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~ 208 (562)
T PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR 208 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566677777777788888888888777777776544
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.30 E-value=4.2 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (621)
+++.+....-+++-..+|.+.++....+|-.++.
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555556666666677777776666666655543
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.27 E-value=2.1 Score=49.04 Aligned_cols=87 Identities=18% Similarity=0.285 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHh--------------hhhhHHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG--------------AESRAESAEEK 398 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r--------------AEsRa~tAesK 398 (621)
.+|+..|.+|+...++.+....+.+......+-..+++++.+.++|..+++++.+ +-..++....-
T Consensus 119 ~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etll 198 (546)
T KOG0977|consen 119 REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444444444444444466666666666666665543 33333333333
Q ss_pred HHHHhhhhHHHHHHhhhhhcC
Q 007027 399 VTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 399 le~LseTNdELerelk~Lesr 419 (621)
-..+.-....|..++.|+..-
T Consensus 199 r~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHhc
Confidence 344556677777777777754
No 55
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.17 E-value=0.0013 Score=75.39 Aligned_cols=145 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhHHHhhhhhH------HHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc---hhhhhhHH----------
Q 007027 371 LNEMDNFIESLKESLYGAESRA------ESAEEKVTQLTDTNLELSEEINFLKGNNDSN---TKKVGILE---------- 431 (621)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa------~tAesKle~LseTNdELerelk~Lesrs~~d---eEK~~~LE---------- 431 (621)
++..+..|..|+.++...+..+ ..=...+..|..+|..+..+++.|+.....- .+....|+
T Consensus 225 ~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~ 304 (722)
T PF05557_consen 225 LAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELE 304 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344777777777766665543 1123457788899999999999988863211 12222222
Q ss_pred HHHHHHHHHHHHhh--hhhHhH-----------------------------HHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 007027 432 NQLRDLEIQLQQAK--VSSEAS-----------------------------QEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 432 ~QLKEa~~QLqhA~--asaEas-----------------------------~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (621)
.+|-++++|.++-. ..++.+ ..+.+-.-..+..+...|.+|..++..+.
T Consensus 305 ~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~ 384 (722)
T PF05557_consen 305 EELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLL 384 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222222211 011111 11222233466666777777777777777
Q ss_pred hhhhhhhhhhhhhccchhhHHH-------HHHHHHhhHHHHH
Q 007027 481 SKTESVEEQCIVLSEDNFELKN-------KQSFMRDKIKILE 515 (621)
Q Consensus 481 ~RaE~aEsK~~~Lse~N~ELeE-------EL~~l~~~lksLE 515 (621)
..++.++.+...+...+..|+. |..+||.-|++.+
T Consensus 385 ~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 385 KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7667777666666666656554 4444444444443
No 56
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.13 E-value=5.4 Score=49.23 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhcc--------chhhH
Q 007027 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE--------DNFEL 500 (621)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse--------~N~EL 500 (621)
.|+.++..++.+++.+..-.++... .++..-..++.++.++.+++...+.++.+..-|.. .+..+
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 676 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEK-------QLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAK 676 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555544433322222 22222333444444444444444444444432211 12344
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 501 KNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT--------KLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Ra--------k~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
++...-+...+..++..+.+..+....+..+...+. .........+...++.+..++-..+.+++.--..|+
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le 756 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELE 756 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666644443332 233445566666666666666666666666666665
Q ss_pred hcC
Q 007027 573 YSG 575 (621)
Q Consensus 573 ~t~ 575 (621)
+-.
T Consensus 757 ~~~ 759 (1201)
T PF12128_consen 757 QQY 759 (1201)
T ss_pred HHH
Confidence 553
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.03 E-value=2.5 Score=49.59 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAK---EVNHRTKLMMEMVMQLATQRELIQKQ 556 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlK---eae~Rak~aE~lV~KL~~ErdrLe~q 556 (621)
.|--.|+.++.+---||.+|..-+--|..-.. |+--.-+.+...+.+=.+||..|...
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667788888888888888877777766633 33334555555555555555555443
No 58
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.94 E-value=5.5 Score=49.34 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (621)
++.+.|+.+++.+..+|..++... ...+.-.+....+.-.+..++--+.+..++|..+..++.++...+..++..+
T Consensus 508 ~~~~~l~~~~~~~~eele~~q~~~----~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~ 583 (1317)
T KOG0612|consen 508 AKKRKLEALVRQLEEELEDAQKKN----DNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEEN 583 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhcc
Confidence 344444444444444444442222 2223334445555566666666677777888888888888888888777755
Q ss_pred CCchhhhhhHHHHH
Q 007027 421 DSNTKKVGILENQL 434 (621)
Q Consensus 421 ~~deEK~~~LE~QL 434 (621)
..-.+++..|+...
T Consensus 584 ~~~~d~l~~le~~k 597 (1317)
T KOG0612|consen 584 RDLEDKLSLLEESK 597 (1317)
T ss_pred ccHHHHHHHHHHHH
Confidence 54567777776653
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=6.1 Score=46.56 Aligned_cols=225 Identities=26% Similarity=0.279 Sum_probs=120.0
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChh--HHHHHHHHHHHHHHH
Q 007027 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS--EVLTMKEKVKSLEEQ 349 (621)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~es--Ev~sLqkKvksLE~q 349 (621)
+.=..+.++|-+++-.++|+ .|...-.+.+.++-..+.+.+-+.-. -.-....++..++.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 33445778888888888777 45555555565555555544433000 000111223334444
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHhHHHhhhhhHH-------HHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE-------SAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~-------tAesKle~LseTNdELerelk~Lesr 419 (621)
..+.+-......+-+.+ .-+..-+|+.+|.-|=.++.+++-+.= .+-.+...|.+.-+.++..+.-|.+.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333322222 133444566666666666666665543 33444444444444444444444444
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHh--hhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 007027 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (621)
Q Consensus 420 s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N 497 (621)
...-..++.-||.|++-.- =.-..-+.+--..+|. |.-.++.+...-.++||.++.+.+...+..+.+|.
T Consensus 519 ~~~~~~~i~~leeq~~~lt--~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~------ 590 (698)
T KOG0978|consen 519 VDKLELKIGKLEEQERGLT--SNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYA------ 590 (698)
T ss_pred HHHHHHHHHHHHHHHHHhh--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3333445555555555322 1111122222223332 22236666777788888888888888888888888
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHh
Q 007027 498 FELKNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~ 522 (621)
++..||...+-+.+-||.-+.+.+
T Consensus 591 -e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 591 -ELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777766555543
No 60
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=95.58 E-value=3.2 Score=42.39 Aligned_cols=208 Identities=16% Similarity=0.213 Sum_probs=115.6
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (621)
.+|+.+....+-.+.|..|...+-.-...+...++..+.|-..-.-.+.-+.....+++.++...-- ++....-.+|.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 3556666666677778888888877788888888888888777666666666666677776654433 66667788899
Q ss_pred HHHhhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHh
Q 007027 309 SKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 309 sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (621)
.+|+.+..=|.. +...+...+..-+.|...-++=+..+..+|..-....... .+.....++..+.++.+|.+-+.+
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l---~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL---AEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888765553 1111222222222222222221111222221111111111 122344666777777777777777
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhh
Q 007027 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (621)
Q Consensus 388 AEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (621)
|......|...+..-..+-.++++....+... .......|.+++.-|.+|....
T Consensus 204 A~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~-------~~~~~~~L~~a~~~L~~a~~ll 257 (264)
T PF06008_consen 204 AQNKTREAEDLNRANQKNLEDLEKKKQELSEQ-------QNEVSETLKEAEDLLDQANDLL 257 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766665555555555555544444432 3444455555554444444333
No 61
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.54 E-value=0.0035 Score=73.73 Aligned_cols=108 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 345 SLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
.++.++...+.++..++.+++.- +.-=..|.+.|..+.+.+..+..+..+.+-.+.-|+.-...+...+.-.
T Consensus 289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555442 1111244455555555555554444444444444444444444444444
Q ss_pred hcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHH
Q 007027 417 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 452 (621)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~ 452 (621)
.+....-+.|...++.+|-+.+..+....+--++++
T Consensus 369 ~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q 404 (859)
T PF01576_consen 369 QAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQ 404 (859)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333344455555555555433333333333333
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.41 E-value=3.4 Score=47.41 Aligned_cols=302 Identities=15% Similarity=0.165 Sum_probs=157.3
Q ss_pred hHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhh
Q 007027 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (621)
Q Consensus 146 ~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla 225 (621)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++...
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~y-------------------- 90 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKY-------------------- 90 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHh--------------------
Confidence 36677777777777777776666666666655421 11 2222222
Q ss_pred hhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchh
Q 007027 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES 305 (621)
Q Consensus 226 ~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs 305 (621)
|..|..++.+.++-.-..+-++.+...+.+....+-.||.+++.....-+.......++|..++.-++=.-.|=.
T Consensus 91 -----e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 91 -----EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 222344455555555556666777777777777777777777777777777777777777766665554433322
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHhhcCChhHH---HHHHHHHHHHHHHHHHH---------------------------HH
Q 007027 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEV---LTMKEKVKSLEEQLKES---------------------------EI 355 (621)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv---~sLqkKvksLE~qLdes---------------------------~e 355 (621)
.+.+.++....+...--..|..++.-.+.|. ..++.+++.|-.+|+-. .-
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~ 245 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKN 245 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHH
Confidence 2322222222222222222333322212222 23333333333333222 22
Q ss_pred HHHHhHhhhhhh-HH-------HH-HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh
Q 007027 356 RLQNANACFQTS-QE-------QL-NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (621)
Q Consensus 356 QL~~A~aklEes-E~-------EV-aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK 426 (621)
+|+.|-..+-+- +. ++ ..+.++|+.++....++=.-...+...+..+--....|...+..|++++..-+.+
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 222221111110 11 11 1455666666654555545555566666666666677777777777776544455
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHH
Q 007027 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 506 (621)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~ 506 (621)
++-|+.||.+-. .+--..+.++.+-|..+...|...- ...-.|=+++.-|.-||+.
T Consensus 326 I~dL~~ql~e~~-----------------r~~e~~L~~kd~~i~~mReec~~l~-------~Elq~LlD~ki~Ld~EI~~ 381 (546)
T KOG0977|consen 326 IEDLEYQLDEDQ-----------------RSFEQALNDKDAEIAKMREECQQLS-------VELQKLLDTKISLDAEIAA 381 (546)
T ss_pred HHHHHhhhhhhh-----------------hhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHhhchHhHHHhHHHH
Confidence 555555554322 1122355666666665555544332 2344566777788889999
Q ss_pred HHhhHH
Q 007027 507 MRDKIK 512 (621)
Q Consensus 507 l~~~lk 512 (621)
||.=|.
T Consensus 382 YRkLLe 387 (546)
T KOG0977|consen 382 YRKLLE 387 (546)
T ss_pred HHHHhc
Confidence 975544
No 63
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=4.4 Score=48.41 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=62.5
Q ss_pred hhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (621)
Q Consensus 280 ~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (621)
.-+++.....++.++++++|.+.+=+ .-++++.+...+++-.++.=++++.....-..++.+|++-...||..
T Consensus 645 ~~~~~k~~e~l~~~~~kyK~lI~~lD-------~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 645 TQLAEKYHEELDDIQQKYKGLIRELD-------YQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34677888899999999998776533 33344444444444333333566777767777777777777777764
Q ss_pred hHhhhhhh----------HHHHHhHHHHHHHHHhHHHhhhhhH
Q 007027 360 ANACFQTS----------QEQLNEMDNFIESLKESLYGAESRA 392 (621)
Q Consensus 360 A~aklEes----------E~EVaaLerrIelLKEel~rAEsRa 392 (621)
+..+.... ..+++++.-.++.++-+...+...+
T Consensus 718 ~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 718 ISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred cccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333221 3355555555555554444444443
No 64
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=1.5 Score=52.18 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH---HHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL---ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd---ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (621)
++++......+..|++.+.--+.++..+-++.-.+++-++ -.+++++.++..+-.-.-+...+.++|.+.+.-.+.-
T Consensus 691 ~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~ 770 (970)
T KOG0946|consen 691 EEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESF 770 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566677777777777777777777766555544444221 1223333333322112234667777785555555666
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhh
Q 007027 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (621)
Q Consensus 445 ~asaEas~eqQ~mkysei~dme~vIEdLk~ 474 (621)
++....+.-.|+-.-..+.|.+.|+|+++.
T Consensus 771 k~~~~~a~~~~~~~~~~~~~qeqv~El~~~ 800 (970)
T KOG0946|consen 771 KATQRSAELSQGSLNDNLGDQEQVIELLKN 800 (970)
T ss_pred HHHHhhhhcccchhhhhhhhHHHHHHHHHh
Confidence 666666666677778888999999998555
No 65
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.84 E-value=9.3 Score=43.56 Aligned_cols=132 Identities=23% Similarity=0.266 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
++++..+++++...-..|+.. .+..|...++....+|..|=..++-=-..-..-+.........+..+.+.|.++..+
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444322 233343333333444443333333333333345667777788888999999999999
Q ss_pred hhhhhcC---CCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 007027 413 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (621)
Q Consensus 413 lk~Lesr---s~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIE 470 (621)
+..+..+ +..+.+++..+++|++....+.........+... -|+.+.....-+.
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~----~yS~i~~~l~~~~ 385 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQV----PYSEIQEELEEIE 385 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----CHHHHHHHHHHHH
Confidence 9998887 2224678889999998887777666655555544 6777666554333
No 66
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=94.67 E-value=4.1 Score=43.43 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=82.9
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHH
Q 007027 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQ 545 (621)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~K 545 (621)
|+=++.++..++...+.++.+.. +...+|.-+..++..|+...+.+...+... ++....|-.-+.+++.-
T Consensus 216 V~P~~~~l~~a~~~l~~~~~~L~-------~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 216 VEPKRQKLEEAEAELEEAEEQLA-------EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp CCHHHHHHHHCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 44566788888888888888888 889999999999999999999888877776 67778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007027 546 LATQRELIQKQVYSLTSENKLLVEKL 571 (621)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekl 571 (621)
|..|+.|=..++..+......|...+
T Consensus 289 L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 289 LSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp CHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHhcccHHHH
Confidence 99999999999999998888876544
No 67
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.43 E-value=12 Score=43.07 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=24.0
Q ss_pred HHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 007027 142 IMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (621)
Q Consensus 142 ~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~ 181 (621)
.+++++.++.+....+......+..++.+....+.-+..+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666555555443
No 68
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.28 E-value=12 Score=42.54 Aligned_cols=241 Identities=16% Similarity=0.212 Sum_probs=120.1
Q ss_pred HHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhh-hhHHHHHhhcCChhHHHHHHHHHHHH
Q 007027 268 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLESTKNSEVLTMKEKVKSL 346 (621)
Q Consensus 268 r~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~-k~~~lekl~~s~esEv~sLqkKvksL 346 (621)
||+.|-+..--+......+-.+++.+.-.|+.....|.+-+.....+.+.-.. +...+.+=++- -+=+..|.+++..+
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~ 177 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENL 177 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHH
Confidence 66666666666666666666666666666666555555555554444444433 22222222221 23445677778888
Q ss_pred HHHHHHHHHHH-----HHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 007027 347 EEQLKESEIRL-----QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (621)
Q Consensus 347 E~qLdes~eQL-----~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (621)
|.+|..+..-. ..|..-+.....++..|+..++.+-.=+...+.-.= ..+ ++|..+..-+...|.
T Consensus 178 e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P---~ql-------~el~~gy~~m~~~gy 247 (569)
T PRK04778 178 EEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELP---DQL-------QELKAGYRELVEEGY 247 (569)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHH-------HHHHHHHHHHHHcCC
Confidence 88887776632 234444444455666666666666554444333221 223 334444444444432
Q ss_pred C-----chhhhhhHHHHHHHHH-----HHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 422 S-----NTKKVGILENQLRDLE-----IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 422 ~-----deEK~~~LE~QLKEa~-----~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
. -+.++..+..++.++. ..|..|.........+-.-+|+.+.+--.... .++.........+.
T Consensus 248 ~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~-------~vek~~~~l~~~l~ 320 (569)
T PRK04778 248 HLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARK-------YVEKNSDTLPDFLE 320 (569)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHH
Confidence 1 1455666666666532 23344444444444444446665443332222 11222222222333
Q ss_pred hhccchhhHHHHHHHHHhh----------HHHHHHHHHHHhHHHH
Q 007027 492 VLSEDNFELKNKQSFMRDK----------IKILESSLNRANIEKA 526 (621)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~----------lksLE~sl~kA~q~k~ 526 (621)
=+.+.|.+|..|+..|..+ +..++..++....+-.
T Consensus 321 ~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 321 HAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 3334444666666666666 5555555554444333
No 69
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.96 E-value=17 Score=43.58 Aligned_cols=74 Identities=22% Similarity=0.211 Sum_probs=38.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHH-------HHHHhhhhhhhhhhhhhhhhhhhhhccchh
Q 007027 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL-------IEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~v-------IEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ 498 (621)
|+..||..|..-+ +..++.-.+-..++..+.++..= -+|++.+=+ ...-.|-.|..
T Consensus 681 Ki~~Le~Ele~er-------~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe---~EiaaAA~KLA------- 743 (769)
T PF05911_consen 681 KISSLEEELEKER-------ALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQE---KEIAAAAEKLA------- 743 (769)
T ss_pred HHHHHHHHHHHHH-------hcchhhhhHHHHHHHHHHhhhcccchhhccccccccchH---HHHHHHHHHHH-------
Confidence 4666666655443 44444333222345555554311 233333222 22335556666
Q ss_pred hHHHHHHHHHhhHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILES 516 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~ 516 (621)
|=-+=|..||..||+|-.
T Consensus 744 ECQeTI~sLGkQLksLa~ 761 (769)
T PF05911_consen 744 ECQETIASLGKQLKSLAT 761 (769)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 777778889999998853
No 70
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.79 E-value=4.8 Score=38.78 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=78.2
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
.+|..+ .++.-+|.++|-+||.+|..++..+..+....|.+..++.+|+..|..+-..+.+.+.-+.+..+.-..+.+.
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 6778899999999999999999999999999898899999998888888888888888888888888777777
Q ss_pred hHHHHHHhhhhhcC
Q 007027 406 NLELSEEINFLKGN 419 (621)
Q Consensus 406 NdELerelk~Lesr 419 (621)
-.+....+..|+++
T Consensus 89 lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 89 LQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777776
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.75 E-value=10 Score=39.59 Aligned_cols=64 Identities=20% Similarity=0.393 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
...+..+.+...+.|+.....+..++..+++.+.++.+|++.+-.++.++..+..|...++.++
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666666777777777777777777776666666665
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.55 E-value=2.8 Score=43.48 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=67.2
Q ss_pred hhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-
Q 007027 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS- 367 (621)
Q Consensus 289 kLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes- 367 (621)
+||.+--.+.-...|-.+...=|+.....++.....+..+ .-++-.+.+.+..+|.++++...++..+..++.+.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~----~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEAL----EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444444444544444544444444444444333 33455666666666666666666666655554221
Q ss_pred -HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 368 -QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 368 -E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
+-+.++|++. +.-|+.|..+.+..+..+-+---.+..++..++. ++..+|+.+-+++
T Consensus 87 ~~~e~~aL~~E-------~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~-------~~~~~e~~~~e~~ 144 (239)
T COG1579 87 DERELRALNIE-------IQIAKERINSLEDELAELMEEIEKLEKEIEDLKE-------RLERLEKNLAEAE 144 (239)
T ss_pred cHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3344444333 3344445555555555555555555555555544 3555666666555
No 73
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=18 Score=41.91 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhh-hccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCCh
Q 007027 255 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (621)
Q Consensus 255 ~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (621)
++||. -+..-|.+|+.++--..-+....+.-+.++-...+ .+ ..++......++++. ++++..+
T Consensus 195 k~f~d-y~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~i-------e~l~~~n~~l~e~i~----e~ek~~~--- 259 (581)
T KOG0995|consen 195 KLFFD-YTIRSYTSFLKGEDNSSELEDELKHRLEKYFTSIANEI-------EDLKKTNRELEEMIN----EREKDPG--- 259 (581)
T ss_pred HHHHH-HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----HHhcCcc---
Confidence 45554 45556777776443366666666655555554333 23 235555555555555 2233222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRL 357 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL 357 (621)
=..+|.+|...|.+++..++.-+
T Consensus 260 -~~eslre~~~~L~~D~nK~~~y~ 282 (581)
T KOG0995|consen 260 -KEESLREKKARLQDDVNKFQAYV 282 (581)
T ss_pred -hHHHHHHHHHHHHhHHHHHHHHH
Confidence 22356666666666666555443
No 74
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.52 E-value=6.2 Score=43.30 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 007027 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (621)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~ 576 (621)
....+.+..+|+-+.-....-|..+...+++++.
T Consensus 350 ~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 350 IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777887887788888888888777653
No 75
>PLN02939 transferase, transferring glycosyl groups
Probab=93.36 E-value=14 Score=45.25 Aligned_cols=156 Identities=25% Similarity=0.371 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-hhh--hhh-------------------------HHHHHhHHHHHHHHHhHHHhh
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNAN-ACF--QTS-------------------------QEQLNEMDNFIESLKESLYGA 388 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~-akl--Ees-------------------------E~EVaaLerrIelLKEel~rA 388 (621)
-.||.|+..||-.|.+++.++.-+. ++. +-. -.++..+...+..||+++.--
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFL 245 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHH
Confidence 3788889999888888877765332 111 000 114444444455555544321
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh-hhHhHHHHHhhhHHHHHhHHH
Q 007027 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV-SSEASQEQQSMLYSAIWDMET 467 (621)
Q Consensus 389 EsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a-saEas~eqQ~mkysei~dme~ 467 (621)
. ......++..+.---+++++..|.+ .|++.+..+--|.+ +++-+-. +|+..|.+
T Consensus 246 ~----~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 301 (977)
T PLN02939 246 K----AELIEVAETEERVFKLEKERSLLDA--------------SLRELESKFIVAQEDVSKLSPL----QYDCWWEK-- 301 (977)
T ss_pred H----HHHHHHHhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhhccch----hHHHHHHH--
Confidence 1 1122233333444445555555554 34444322211111 1111123 34545544
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
+|-|+.=+.+|-..+| +.+++...|- -++.++..||++|..|+..|-++
T Consensus 302 -~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 350 (977)
T PLN02939 302 -VENLQDLLDRATNQVE----KAALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSS 350 (977)
T ss_pred -HHHHHHHHHHHHHHHH----HHHHHhccch-------HHHHHHHHHHHHHHHhhHhhhhH
Confidence 2333344445544433 4555666676 56789999999999999988754
No 76
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.15 E-value=21 Score=41.52 Aligned_cols=76 Identities=17% Similarity=0.165 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH----HhHHHHhh---HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007027 499 ELKNKQSFMRDKIKILESSLNR----ANIEKAAS---AKE-----VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~k----A~q~k~~t---lKe-----ae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~ 566 (621)
..-++++.++..++.++.-+.. +.+-+..| =|+ --.|.--|-..|.|-..+++++-.+.-.+.++.+.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~ 523 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINS 523 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777665543332 22222222 112 12233344456677778888888999999999999
Q ss_pred HHHHHhhc
Q 007027 567 LVEKLQYS 574 (621)
Q Consensus 567 L~ekld~t 574 (621)
+..+|+.|
T Consensus 524 l~gkL~Rt 531 (594)
T PF05667_consen 524 LTGKLDRT 531 (594)
T ss_pred HHHHHHhH
Confidence 99999987
No 77
>PRK09039 hypothetical protein; Validated
Probab=93.07 E-value=15 Score=39.62 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHH
Q 007027 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL 538 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~ 538 (621)
+..|.++-.-|+-|+..+...+...+.+|.+.. -...++.+|+..++.|-..+..-+. .-|-+|
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~--------------~~~~~i~~L~~~L~~a~~~~~~~l~--~~~~~~ 199 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDR--------------ESQAKIADLGRRLNVALAQRVQELN--RYRSEF 199 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHH
Confidence 445666666666666666665555555555444 4444455555555555444333222 234555
Q ss_pred HHHHHHHH
Q 007027 539 MMEMVMQL 546 (621)
Q Consensus 539 aE~lV~KL 546 (621)
+.++...|
T Consensus 200 ~~~l~~~~ 207 (343)
T PRK09039 200 FGRLREIL 207 (343)
T ss_pred HHHHHHHh
Confidence 55554333
No 78
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.93 E-value=12 Score=38.15 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=106.3
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhH
Q 007027 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (621)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas 451 (621)
.+|...|..++.++..+|.+......+|..+...|.+...=+.-++..-. .-+...+++-..++..++ .+....
T Consensus 5 ~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~---~~i~e~~~~~~~~~~~i~---~~~~er 78 (207)
T PF05010_consen 5 KDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIA---QMIEEKQKQKELSEAEIQ---KLLKER 78 (207)
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHhhHHhHHHHHH---HHHhhH
Confidence 35666777777777777777777777777777777776665555544311 111111111111111111 011111
Q ss_pred HHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH----HHHHHHHhHHHHh
Q 007027 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKAA 527 (621)
Q Consensus 452 ~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL----E~sl~kA~q~k~~ 527 (621)
+. .|..+.-++.-.-||-.++++...-++.+-..=-.|-.+--+...-|.-.+.|...| +.+++.||..=+.
T Consensus 79 dq----~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~ 154 (207)
T PF05010_consen 79 DQ----AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQ 154 (207)
T ss_pred HH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 344444444444444444444443322222211111122234444444444554444 4567777777777
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
.-+..........-.+.+.+..+.-|+.+|-.-+.+|..|..=||..
T Consensus 155 v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 155 VRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888888888888888888888887777753
No 79
>PRK11281 hypothetical protein; Provisional
Probab=92.85 E-value=6.7 Score=48.48 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=23.7
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 007027 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (621)
.-+.+.|.+|.++|-....++..+-....++.
T Consensus 281 ~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~ 312 (1113)
T PRK11281 281 AQELEINLQLSQRLLKATEKLNTLTQQNLRVK 312 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33557799999999999999888765554443
No 80
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.76 E-value=1.2 Score=52.43 Aligned_cols=139 Identities=20% Similarity=0.267 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 007027 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (621)
Q Consensus 431 E~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~ 510 (621)
+.|+++.. +++.-+....+..+....+|+.++++-..+. .. ++.=+..+..+.-.||+...+.-+||.-++.+
T Consensus 575 e~Ql~~L~-~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~---~R---~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~ 647 (717)
T PF10168_consen 575 EQQLKELQ-ELQEERKSLRESAEKLAERYEEAKDKQEKLM---KR---VDRVLQLLNSQLPVLSEAEREFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 34555442 3433333333333333346666666655444 22 22222233445566888888999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC
Q 007027 511 IKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGK 576 (621)
Q Consensus 511 lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~ 576 (621)
++.|.++++++..+...--..++.++..-...+.==....+++.+-|....++.+.+..++++.++
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987766654333333332222211112233444444444444444444444444443
No 81
>PRK09039 hypothetical protein; Validated
Probab=92.75 E-value=6.5 Score=42.30 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=10.5
Q ss_pred CceeeeccCCCCCcc
Q 007027 578 SSATMYNAGDTDDKE 592 (621)
Q Consensus 578 ~~~~~~~~~~~~~~~ 592 (621)
.+..+++.|.||...
T Consensus 261 i~~~I~I~GHTD~~p 275 (343)
T PRK09039 261 INWVLRVDGHTDNVP 275 (343)
T ss_pred CCeeEEEEEecCCCC
Confidence 345678888888763
No 82
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.74 E-value=32 Score=42.57 Aligned_cols=220 Identities=19% Similarity=0.230 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--
Q 007027 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE-- 412 (621)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere-- 412 (621)
++.+-+-|+..||.++.-+..++.+.+-+++..+.++.-++..|.....+++.-+-++++.+.....|.+--.+.+..
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999998888777666666666665555555444444444443333333332222221
Q ss_pred hhhhhcCCCC------------chhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 007027 413 INFLKGNNDS------------NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 413 lk~Lesrs~~------------deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (621)
..|-..-|.. -..|.-.+++|+--++.||+--+ |...-..+.+++.-|+++...+.--+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~---------~~d~~~~ve~~~~~v~~~~~~~~~~~ 827 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEK---------QKDTQRRVERWERSVEDLEKEIEGLK 827 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhee---------cccHHHHHHHHHHHHHHHHHhHHhhH
Confidence 0111111110 01223333444443333333332 33333344455555555555444444
Q ss_pred hhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 481 ~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (621)
.+-+.++..+. +. +++.- ++ .+....+..-+++...-..-+..-.++|..++..++.+|-..
T Consensus 828 ~~e~~~~k~i~-------e~-~~~e~-k~---------k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 828 KDEEAAEKIIA-------EI-EELEK-KN---------KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERK 889 (1141)
T ss_pred HHHHHHHHHHh-------hH-HHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 44444444444 33 22222 11 122222222244444444455566678899999999999999
Q ss_pred HHhhhHHHHHHhhcCCCCcee
Q 007027 561 TSENKLLVEKLQYSGKSSSAT 581 (621)
Q Consensus 561 keenK~L~ekld~t~~~~~~~ 581 (621)
..+...|-..|+--.+..|+.
T Consensus 890 ~~er~~lL~~ckl~~I~vPl~ 910 (1141)
T KOG0018|consen 890 ESERHNLLSKCKLEDIEVPLS 910 (1141)
T ss_pred HHHHHHHHHHhhhcccccccc
Confidence 998888877777666666653
No 83
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.71 E-value=17 Score=39.24 Aligned_cols=135 Identities=24% Similarity=0.305 Sum_probs=90.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHH
Q 007027 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK 503 (621)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEE 503 (621)
+-|.++|+..|+...-.|..-.-+.|..++..+-...-++.|+.+--.=++|+.+.-.+-+++|.++.=|--.|+
T Consensus 157 esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~----- 231 (305)
T PF14915_consen 157 ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM----- 231 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 456777777777777666666666666665555556677777777666679999999999999999984444454
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 504 QSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 504 L~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
-++..|...... -..++.++-+|..+ +-++|.+|..+.+ .|...+.++||.|..+|...+
T Consensus 232 --LLrQQLddA~~K----~~~kek~ViniQ~~---f~d~~~~L~ae~e---kq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 232 --LLRQQLDDAHNK----ADNKEKTVINIQDQ---FQDIVKKLQAESE---KQVLLLEERNKELINECNHLK 291 (305)
T ss_pred --HHHHHHHHHHHH----HHHHHHHHhhHHHH---HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Confidence 444433322111 11244455555544 5678888877764 578888899999998887764
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.66 E-value=14 Score=38.14 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 554 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe 554 (621)
.|.-+|..+++...+|+..+......=..-..+....-.-.+.-+.++..++.+..
T Consensus 227 ~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 227 SLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 56666666777777777666655554444444444444444444444444444433
No 85
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.48 E-value=28 Score=41.31 Aligned_cols=123 Identities=23% Similarity=0.260 Sum_probs=76.5
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh----hhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHh
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT----DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls----eTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA 444 (621)
..|..++..|..|++-+.--..|+..-+..+..++ +-+.+|++..++-.+. |-+|.+.+
T Consensus 349 ~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~k-----------e~eleeL~------ 411 (786)
T PF05483_consen 349 FVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNK-----------EVELEELK------ 411 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhh-----------HHHHHHHH------
Confidence 36779999999999999999999998888877554 4555565555533332 44555554
Q ss_pred hhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 007027 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (621)
Q Consensus 445 ~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ 524 (621)
..-+.... ++++-.+.+.+.|.|++.-. +|.-=|......+-+|+..+..+-..
T Consensus 412 -~~L~e~qk----ll~ekk~~eki~E~lq~~eq---------------------el~~llq~~ekev~dLe~~l~~~~~~ 465 (786)
T PF05483_consen 412 -KILAEKQK----LLDEKKQFEKIAEELQGTEQ---------------------ELTGLLQIREKEVHDLEIQLTTIKES 465 (786)
T ss_pred -HHHHHHHH----HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 33333333 68888888888887776522 22222445555555566655555555
Q ss_pred HHhhHHHHHH
Q 007027 525 KAASAKEVNH 534 (621)
Q Consensus 525 k~~tlKeae~ 534 (621)
+-.|.+....
T Consensus 466 eq~yskQVee 475 (786)
T PF05483_consen 466 EQHYSKQVEE 475 (786)
T ss_pred hHHHHHHHHH
Confidence 5555444333
No 86
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.14 E-value=7.6 Score=38.93 Aligned_cols=145 Identities=22% Similarity=0.296 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (621)
+.+||+||..||-+-..++..+.......-.+ +.+..+=++....+-..--.-.+.+..|+++|..|.+ +|+-
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEK---QLey 82 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEK---QLEY 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 56899999999988777777765432221111 1222222222222222222334566677777777765 4555
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+++.+++- +.||-..+|+|..--+ -+ -.-..++++++++ ++..|..|.
T Consensus 83 MRkmv~~a---e~er~~~le~q~~l~~-----e~--------------------~~~~~~~~~klek----Le~LE~E~~ 130 (178)
T PF14073_consen 83 MRKMVESA---EKERNAVLEQQVSLQR-----ER--------------------QQDQSELQAKLEK----LEKLEKEYL 130 (178)
T ss_pred HHHHHHHH---HHhhhHHHHHHHHHHH-----Hh--------------------ccchhhHHHHHHH----HHHHHHHHH
Confidence 55555552 3466666666543111 00 0112234455443 446777898
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 007027 492 VLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (621)
.|.--=++-..+++.||..|..-.
T Consensus 131 -------rLt~~Q~~ae~Ki~~LE~KL~eEe 154 (178)
T PF14073_consen 131 -------RLTATQSLAETKIKELEEKLQEEE 154 (178)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555588889999988876543
No 87
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.62 E-value=43 Score=41.78 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=22.6
Q ss_pred hccchhhHHHHHHHHHhhHHHHHHHHHHH
Q 007027 493 LSEDNFELKNKQSFMRDKIKILESSLNRA 521 (621)
Q Consensus 493 Lse~N~ELeEEL~~l~~~lksLE~sl~kA 521 (621)
+.+.|.+|.++|.....++..|-....++
T Consensus 263 ~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~ 291 (1109)
T PRK10929 263 QFKINRELSQALNQQAQRMDLIASQQRQA 291 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44779999999999999998875554443
No 88
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.54 E-value=23 Score=38.25 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=97.9
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhH----HHHHHhhHHHHHh
Q 007027 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLK 319 (621)
Q Consensus 244 Lk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKL~~~~eqL~ 319 (621)
|.-||-.-.|-+..||-.++++.-|+..|-+=. ++=|+..-||.-+++|+.| |+.|+..-+-+|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lk 143 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLK 143 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHH
Confidence 445555556778889999999999998875432 3456777888889999988 6666666565555
Q ss_pred hhhHH-HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHH
Q 007027 320 AKDMV-LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (621)
Q Consensus 320 ~k~~~-lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesK 398 (621)
..... -++|... ++-+.+|..++..+=+.|++--.-|.++.-.+..++.++..|+...+.=+.++.+.-.+-++.+.+
T Consensus 144 d~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eER 222 (305)
T PF14915_consen 144 DNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEER 222 (305)
T ss_pred HHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 43322 2344333 455555555555555555555555556665555567777777777777777777777777766666
Q ss_pred HHHHhh
Q 007027 399 VTQLTD 404 (621)
Q Consensus 399 le~Lse 404 (621)
+.++--
T Consensus 223 L~Qlqs 228 (305)
T PF14915_consen 223 LSQLQS 228 (305)
T ss_pred HHHHHH
Confidence 665543
No 89
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.48 E-value=29 Score=40.53 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=39.7
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
...-..-|+.++..++.++..||.+++.=..+...... ++. ...+.++..++.||..++.++..|.+
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------------~~~-~~~~~~L~~l~~ql~~a~~~~~~a~a 258 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------------NNA-TLATQQLAELNTELSRARANRAAAEG 258 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------------CCc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777666655554433321 121 11235677777777776655555544
Q ss_pred hhHh
Q 007027 447 SSEA 450 (621)
Q Consensus 447 saEa 450 (621)
-...
T Consensus 259 ~~~~ 262 (754)
T TIGR01005 259 TADS 262 (754)
T ss_pred HHHH
Confidence 4433
No 90
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.34 E-value=0.058 Score=62.20 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhccchhhHHHHHHHHHhhHH
Q 007027 492 VLSEDNFELKNKQSFMRDKIK 512 (621)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lk 512 (621)
-|-.+|..|..|++.|+..-+
T Consensus 261 ~LE~en~~l~~Elk~Lr~~~~ 281 (722)
T PF05557_consen 261 ELEKENRRLREELKHLRQSQE 281 (722)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555554443
No 91
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.24 E-value=30 Score=39.37 Aligned_cols=9 Identities=33% Similarity=0.582 Sum_probs=6.2
Q ss_pred CCcceeecc
Q 007027 589 DDKELLINP 597 (621)
Q Consensus 589 ~~~~~~~~~ 597 (621)
|.-+|+|.|
T Consensus 420 d~v~f~~~~ 428 (563)
T TIGR00634 420 DQVEFLFSA 428 (563)
T ss_pred eEEEEEEec
Confidence 556788855
No 92
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.22 E-value=0.097 Score=60.42 Aligned_cols=118 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhH
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (621)
+.+.+...+..|++++.+.+.-......+|+.+.....+|..+...|...+ +.+..|--.+-+++ .
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR-------~--- 305 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELR-------E--- 305 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHH-------H---
Confidence 344555566666666666665555555555555555544444443333322 12222222222221 1
Q ss_pred hHHHHHhhhHHHHHhHHHHHHHHhhhhhh---hhhhhhhhhhhhhhhccchhhHHHHHHHHHh
Q 007027 450 ASQEQQSMLYSAIWDMETLIEDLKSKVSK---AESKTESVEEQCIVLSEDNFELKNKQSFMRD 509 (621)
Q Consensus 450 as~eqQ~mkysei~dme~vIEdLk~Kl~r---AE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~ 509 (621)
+-+.+.++++.|+-.|.|+.- -..|.+..+.++..|=+++..|+++|+-++.
T Consensus 306 --------~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~ 360 (713)
T PF05622_consen 306 --------KADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARA 360 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 111222233333333332221 1233445566677777777888888876544
No 93
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.14 E-value=13 Score=39.55 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHH
Q 007027 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 309 (621)
Q Consensus 252 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s 309 (621)
...+.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+..
T Consensus 125 ~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~ 177 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDE 177 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556777787775 6788888888888888888887666555444433
No 94
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.06 E-value=23 Score=37.31 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeecc
Q 007027 546 LATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (621)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~ 585 (621)
+..++..++.++.....+...+...++.+...+|++-++.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~ 283 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEE
Confidence 3345566666777777777777778888988888876554
No 95
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.95 E-value=45 Score=40.54 Aligned_cols=277 Identities=18% Similarity=0.199 Sum_probs=133.2
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHH
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~ 308 (621)
-||-.|-+...-...|..|+.-.|-++..|-++...+-.-+-+++--+|-+.. ||...+-.|+|-..-=--+-
T Consensus 96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~s-------rlh~le~eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNS-------RLHKLEDELSAKAHDIFMIG 168 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHhhhhHHHHHHH
Confidence 35555666666667788888888888888877776666666555544443333 33333333333211000011
Q ss_pred HHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh---h---HHHHHhHHHHHHHHH
Q 007027 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT---S---QEQLNEMDNFIESLK 382 (621)
Q Consensus 309 sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe---s---E~EVaaLerrIelLK 382 (621)
.-|...-+.|...+..+..+.+...++...+..|++.+-+.+..-....+.....-+. . +-++++--....-++
T Consensus 169 ~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~r 248 (1265)
T KOG0976|consen 169 EDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLR 248 (1265)
T ss_pred HHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh
Confidence 1222333333333333333222224455555555555544443332221111000000 0 112223223333344
Q ss_pred hHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhH--HHHHhhhHH
Q 007027 383 ESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS--QEQQSMLYS 460 (621)
Q Consensus 383 Eel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas--~eqQ~mkys 460 (621)
-..++-+++-. .+.-.|+++.+.+..|+-..+.-.+-...-|-.+|+.+.-|+.-+.+...+ +-.|.-+|-
T Consensus 249 k~~s~i~E~d~-------~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkyl 321 (1265)
T KOG0976|consen 249 KTCSMIEEQDM-------DLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYL 321 (1265)
T ss_pred hhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 44444444333 334445555444444433322222223333444555555554444443333 233666888
Q ss_pred HHHhHH--HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 007027 461 AIWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (621)
Q Consensus 461 ei~dme--~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~ 526 (621)
....|. .-+-|++-.|..|.-.++++-.|.- +|+.+=....-++-++...+.-....+-
T Consensus 322 h~enmkltrqkadirc~LlEarrk~egfddk~~-------eLEKkrd~al~dvr~i~e~k~nve~elq 382 (1265)
T KOG0976|consen 322 HLENMKLTRQKADIRCALLEARRKAEGFDDKLN-------ELEKKRDMALMDVRSIQEKKENVEEELQ 382 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 777777 3455667777777777777777777 7777776666666666555444433333
No 96
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.85 E-value=18 Score=35.80 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=5.7
Q ss_pred HHHHHhhHHHHHHHH
Q 007027 504 QSFMRDKIKILESSL 518 (621)
Q Consensus 504 L~~l~~~lksLE~sl 518 (621)
+.-++.++..+|...
T Consensus 167 ~er~e~ki~~~ea~a 181 (221)
T PF04012_consen 167 FERMEEKIEEMEARA 181 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 97
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.47 E-value=58 Score=41.02 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=46.3
Q ss_pred HHHHHHhhhhhhhhhHhhH--------------HHhhhHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHhccchHHHHhh
Q 007027 217 LRMLEKSLARELDLEKKIS--------------ELNQNEEQLKLKLHHTE-QVAFRMEEAAEVVWGRFLEAENSAEVLMG 281 (621)
Q Consensus 217 LrMLekSla~eldLEkkL~--------------es~~~eeeLk~KL~~~e-qe~~~lEE~~~~~~er~~EAENa~EvL~g 281 (621)
+.|||.++.+++--=+++. +..+..+.++....... .....+--....+-+||.+.+|-...|..
T Consensus 436 ~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~ 515 (1317)
T KOG0612|consen 436 LQILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEA 515 (1317)
T ss_pred hhhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6788888888743222222 22222233333322222 12222334556677888888888888888
Q ss_pred hhHHHHhhhhHHhhhc
Q 007027 282 ISKEMLGRFQIVQFNL 297 (621)
Q Consensus 282 ~skel~gkLq~~qf~L 297 (621)
....+...|..+|--.
T Consensus 516 ~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 516 LVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777765443
No 98
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.42 E-value=38 Score=41.98 Aligned_cols=227 Identities=18% Similarity=0.205 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHH--HHhhHHHHHhhhhHHHHHhhcCCh
Q 007027 256 FRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS--KLGDFIEQLKAKDMVLQKLESTKN 333 (621)
Q Consensus 256 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~s--KL~~~~eqL~~k~~~lekl~~s~e 333 (621)
-.+..++..+-+|+=..++.+++..+..-.+..-++.+.-.++.- |..|-+ .|=...++-.+....+.++ .
T Consensus 237 s~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~k---e~~l~erp~li~~ke~~~~~k~rl~~~----~ 309 (1141)
T KOG0018|consen 237 SRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEK---EEKLAERPELIKVKENASHLKKRLEEI----E 309 (1141)
T ss_pred HHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHhhcchhhccchhHHHHh----h
Confidence 334445555666666777777777766655555554443332210 111111 0001111111111111111 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH----HHHHHHhHH-------HhhhhhHHHHHHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN----FIESLKESL-------YGAESRAESAEEKVTQL 402 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer----rIelLKEel-------~rAEsRa~tAesKle~L 402 (621)
..+.+.++....+-.+++...-++..+..+-++.+.++...-+ .+.+.++.+ +.|.-++ ...|
T Consensus 310 k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~------~~el 383 (1141)
T KOG0018|consen 310 KDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA------LEEL 383 (1141)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh------HHHH
Confidence 2333444444444444444444555555555555555554444 233333333 2222222 3333
Q ss_pred hhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 007027 403 TDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (621)
Q Consensus 403 seTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (621)
.--|.+-...-..|.+ ...+...+|..++..+ .+.+..+.+++.+...+.-.....++++.++..-+.+
T Consensus 384 ~~ln~~~r~~~~~ld~----~~~~~~elE~r~k~l~-------~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~ 452 (1141)
T KOG0018|consen 384 EVLNRNMRSDQDTLDH----ELERRAELEARIKQLK-------ESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESL 452 (1141)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 3333333333222322 2345666777777666 5556777777777788888888888899999999999
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 007027 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (621)
Q Consensus 483 aE~aEsK~~~Lse~N~ELeEEL~~l~~~lks 513 (621)
...++++.. ++++||.-+...+-.
T Consensus 453 ~~~~~~~~~-------e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 453 VSSAEEEPY-------ELNEELVEVLDQLLD 476 (1141)
T ss_pred HhhhhhhHH-------HHHHHHHHHHHHHHh
Confidence 999999999 999999998776653
No 99
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.11 E-value=45 Score=39.18 Aligned_cols=223 Identities=17% Similarity=0.228 Sum_probs=130.6
Q ss_pred HHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHh
Q 007027 144 EKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKS 223 (621)
Q Consensus 144 ~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekS 223 (621)
+.++..|++.--.|.+.|+.--.=|+..+.--|-|- -++++-.|..-+=|=|+
T Consensus 18 e~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefk---------------------------k~~pe~k~k~~~~llK~ 70 (629)
T KOG0963|consen 18 ERLQRELDAEATEIAQRQDESEISRKRLAEETREFK---------------------------KNTPEDKLKMVNPLLKS 70 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHh---------------------------ccCcHHHHHHHHHHHHH
Confidence 445666666666777777765555555444333331 13455566666666666
Q ss_pred hhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhh-------hH------HHHhhh
Q 007027 224 LARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI-------SK------EMLGRF 290 (621)
Q Consensus 224 la~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~-------sk------el~gkL 290 (621)
--+|+|. .+...++-|-+--.||+++.+|.---=+|-+. .+ .+..+|
T Consensus 71 yQ~EiD~--------------------LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~l 130 (629)
T KOG0963|consen 71 YQSEIDN--------------------LTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEEL 130 (629)
T ss_pred HHHHHHH--------------------HHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 6666664 35567788888899999999997654444332 22 333333
Q ss_pred hHHhhhccccccchhHHHHHHhhHHHHHhhh-h-----HHHH---HhhcC---C----hhHHHHHHHHHHHHHHHHHHHH
Q 007027 291 QIVQFNLNGSLQRESELKSKLGDFIEQLKAK-D-----MVLQ---KLEST---K----NSEVLTMKEKVKSLEEQLKESE 354 (621)
Q Consensus 291 q~~qf~L~as~~REsel~sKL~~~~eqL~~k-~-----~~le---kl~~s---~----esEv~sLqkKvksLE~qLdes~ 354 (621)
......|.+..-.+..++ +|+...-+++.+ + .+.. ++... + -.+-..+++++..+|...+..+
T Consensus 131 ee~~~el~~~k~qq~~v~-~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq 209 (629)
T KOG0963|consen 131 EEVNNELADLKTQQVTVR-NLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQ 209 (629)
T ss_pred HHHHHHHhhhhhhHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333322222111111 111111111110 0 0000 00000 0 2445567777777777777777
Q ss_pred HHHHHhHhhhhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 355 IRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 355 eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
..+..+..++... ..++++..-.|.++=.++.+|..|+-.++..|+.|.+....-+...+
T Consensus 210 ~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 210 SAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 7777666666553 55788888999999999999999999999999998877666665544
No 100
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.80 E-value=26 Score=35.93 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh-----------
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD----------- 404 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse----------- 404 (621)
+..+.+.+..|+.+++....+...+..+..........+-.+-+.|...+.+-...+.....+...+..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~ 126 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 444555566666666666666665555544433333444444444444444444444444444433333
Q ss_pred -hhHHHHHHhhhhhcCCC
Q 007027 405 -TNLELSEEINFLKGNND 421 (621)
Q Consensus 405 -TNdELerelk~Lesrs~ 421 (621)
.-.+..+.+..+++|.+
T Consensus 127 ~~l~ea~~mL~emr~r~f 144 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDF 144 (264)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 33444455566666543
No 101
>PLN03188 kinesin-12 family protein; Provisional
Probab=89.67 E-value=68 Score=40.63 Aligned_cols=119 Identities=19% Similarity=0.249 Sum_probs=82.3
Q ss_pred HHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 007027 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (621)
Q Consensus 453 eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~ 527 (621)
++.+.+...=+++-.-|.|.|--.+||=-| .+|++.+ =||---.|=+.|-++++..=|+|+.+|--.-+.--+
T Consensus 1121 ek~~~ll~~hr~i~egi~dvkkaaakag~k--g~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188 1121 EKHIQLLARHRRIQEGIDDVKKAAARAGVR--GAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 434444445556666677777776666544 6777766 011112233445555555588999988655554444
Q ss_pred h------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 528 S------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 528 t------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
. +|||+--+.++++--+..+.|-+++..||-.+|.++..=...+++
T Consensus 1199 agellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1199 AGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 899999999999999999999999999999999999665555655
No 102
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.64 E-value=27 Score=38.41 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLK 351 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLd 351 (621)
.+.+..++.++..++.++.
T Consensus 274 hP~v~~l~~qi~~l~~~l~ 292 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKE 292 (498)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.95 E-value=29 Score=35.37 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHH
Q 007027 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (621)
Q Consensus 388 AEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~ 467 (621)
+-.|+..--.||....++.++.+..+. +.+..|.+|++-.. ||...+.+-++....+...++-.+.
T Consensus 16 ~n~~L~~en~kL~~~ve~~ee~na~L~----------~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE 81 (193)
T PF14662_consen 16 NNQKLADENAKLQRSVETAEEGNAQLA----------EEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEE 81 (193)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655 34556666777543 5544444444422224444444443
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 007027 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (621)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL 514 (621)
.=--|-......|...-+...++..|-+.|-.|..|..-+..+.+.|
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 33333334444555556677777777777777777777777777666
No 104
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.76 E-value=30 Score=35.28 Aligned_cols=144 Identities=24% Similarity=0.279 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHH-------HhhhhhHHHHHHHHHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL-------YGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel-------~rAEsRa~tAesKle~LseT 405 (621)
++....|...+..|.++++..+--++.|++ ...++.+|......|++.- ...|.-.++-.++...|-+-
T Consensus 35 ee~na~L~~e~~~L~~q~~s~Qqal~~aK~----l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 35 EEGNAQLAEEITDLRKQLKSLQQALQKAKA----LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777766544444422 2333444444333333332 22233333344444445555
Q ss_pred hHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 007027 406 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 406 NdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (621)
|-.+..+++-+..+.-.-..+-..|=+||.+++.=+-+-.+++...-.+...+...|...-.++++|+.+.+|-|
T Consensus 111 n~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 111 NGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555442211123344555555554333333444444444455555566666666666666655444
No 105
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=88.69 E-value=0.24 Score=57.20 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhH
Q 007027 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (621)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (621)
.+..-.++.++...-|+.......+++..|+.|+.+....|+....-++
T Consensus 485 ~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~~l~~~~~~~~ 533 (713)
T PF05622_consen 485 ELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQKSLQEQGSKSE 533 (713)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333333333333334333333345677777777766655544433333
No 106
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.69 E-value=25 Score=35.35 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=74.8
Q ss_pred hHHHHHh-HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh--------
Q 007027 458 LYSAIWD-METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS-------- 528 (621)
Q Consensus 458 kysei~d-me~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-------- 528 (621)
-|..|.+ =+.+|.-||.++.--..+.+..+.-..-++..|..|.+-|...+..+..|...+..+..-+.+.
T Consensus 17 YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 17 YYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666554 4588999999998888888888888898999999999999999999999999998887666543
Q ss_pred -----HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 -----AKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (621)
Q Consensus 529 -----lKeae~Rak~aE~lV~KL~~ErdrLe~q 556 (621)
+++..--.++.+.-+.++..|||.|...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555566666666666554
No 107
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.34 E-value=14 Score=34.80 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=17.3
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+.+++.++..-++-|+..+.+.+++.+.++.++.
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555444444444
No 108
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.32 E-value=56 Score=37.85 Aligned_cols=123 Identities=12% Similarity=0.228 Sum_probs=54.8
Q ss_pred HHHhccchHHHHhhhhHHHHh--hhhHHhhhccccccch-hHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHH
Q 007027 268 RFLEAENSAEVLMGISKEMLG--RFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVK 344 (621)
Q Consensus 268 r~~EAENa~EvL~g~skel~g--kLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvk 344 (621)
.+++.++..++|....+.++| .+.....+|.....|- ++. .......+++..+..+..+. .+...+..++.
T Consensus 160 ~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~--~~~~~~~~~~~le~el~~l~----~~~e~l~~~i~ 233 (650)
T TIGR03185 160 ALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSE--LPSSILSEIEALEAELKEQS----EKYEDLAQEIA 233 (650)
T ss_pred HHhccccchHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 466677888877766666654 3445556666543321 111 01112222222222222211 12222333333
Q ss_pred HHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 345 SLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
.++.+++..+.++..+...+.. ...+...++..+..++.++.+++.++....
T Consensus 234 ~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 234 HLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333222222 133455667777777777766666665443
No 109
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=87.96 E-value=70 Score=38.58 Aligned_cols=122 Identities=22% Similarity=0.340 Sum_probs=68.2
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
+.++-.|+..-..|+..+.++...+.....++.++.....++..++..++... ...|.||+-.+ .+
T Consensus 595 ~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~-------s~~E~ql~~~~-------e~ 660 (769)
T PF05911_consen 595 EEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESN-------SLAETQLKAMK-------ES 660 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HH
Confidence 44666666667777777777777777777777777777777777777665542 33444444322 11
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhh
Q 007027 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 510 (621)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~ 510 (621)
-+..+-+-...-.++..+-.-|.-|..++.+-...-+-++.||. +|+++|.-+...
T Consensus 661 ~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~-------~Le~el~r~~~~ 716 (769)
T PF05911_consen 661 YESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCR-------ELEEELERMKKE 716 (769)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHH-------HHHHHHHhhhcc
Confidence 11111111111122222333333333555444444455678898 899988887543
No 110
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.92 E-value=57 Score=37.55 Aligned_cols=327 Identities=19% Similarity=0.228 Sum_probs=187.0
Q ss_pred chHHHHHHHHHHHHhhh--------hhhhhhHhhHHHhhhHHHHhhhhhhhhHH----HHHHHHHHHHHHHHHHhccchH
Q 007027 209 NADQQRHILRMLEKSLA--------RELDLEKKISELNQNEEQLKLKLHHTEQV----AFRMEEAAEVVWGRFLEAENSA 276 (621)
Q Consensus 209 t~eqqR~iLrMLekSla--------~eldLEkkL~es~~~eeeLk~KL~~~eqe----~~~lEE~~~~~~er~~EAENa~ 276 (621)
|.+||---=+|.||.|- +=|+++-.-.. .++||+......-+- ...+-+.-..+++++-||.-.+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~---~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEP---SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777444567777653 34455443333 456777766554443 3345555667777777777665
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007027 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (621)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (621)
+-. +.+-.|--.++.|+|-..--++-+++|-..-.-.++.-..++++ +++|+..|+.+...|-.|+..-...
T Consensus 295 ~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 533 56666777777777655555555555544333222222222221 5788888888888887777664332
Q ss_pred HH---HhHhhhhhhHHHHHhHHHHHHH----HHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC--------
Q 007027 357 LQ---NANACFQTSQEQLNEMDNFIES----LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-------- 421 (621)
Q Consensus 357 L~---~A~aklEesE~EVaaLerrIel----LKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-------- 421 (621)
.. ..++.-+..--++.-++-.+.. +++.=..|+.++.+.+-++-.+-..++.+.+-+..+...+-
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 22 2222212111122222222322 33344567778888887777777777777665444433221
Q ss_pred --------CchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHh--h-hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 007027 422 --------SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (621)
Q Consensus 422 --------~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~--m-kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~ 490 (621)
.-.+++.-++..|... +| +.....|+ . +-..+..+.++|-+|...+..-|.|+-.|=++|
T Consensus 447 E~~~~~~sg~~~~I~~~i~eln~~-i~--------~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 447 EQLFPKGSGINESIKKSILELNDE-IQ--------ERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred ccCCccccCchHhHHHHHHHHhHH-HH--------HHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144554555555432 11 11111122 1 445778888999999999999999999999999
Q ss_pred hhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhH---H-HHHHHHHHHHHHHHHHHHHHH
Q 007027 491 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT---K-LMMEMVMQLATQRELIQKQVY 558 (621)
Q Consensus 491 ~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Ra---k-~aE~lV~KL~~ErdrLe~ql~ 558 (621)
-++-++|. +|+...+..+.-||..+.+.+-.--..+=+++.|- . .+.++.-.+...|..++.++.
T Consensus 518 ~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~ 586 (622)
T COG5185 518 ELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVI 586 (622)
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98888775 67777777788888877776654443343443331 1 133444445555555555544
No 111
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.88 E-value=27 Score=33.76 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=45.3
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+++--++.+.+-.+++..||+.|.-+...++++..=+|.+.. +|+.|+.+++..-+....++....
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444566666666666665555555555555544 233333333333333333334444
Q ss_pred hhccchhhHHHHHHHHHhhHHHHHHHH
Q 007027 492 VLSEDNFELKNKQSFMRDKIKILESSL 518 (621)
Q Consensus 492 ~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (621)
.|+..+-.|..+|.-..+++..||...
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555554443
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.81 E-value=17 Score=37.54 Aligned_cols=122 Identities=29% Similarity=0.351 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh
Q 007027 347 EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK 426 (621)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK 426 (621)
|....++..+|.........+...+..-+.++..|.++.-.|+.-+..-+.+-..+...+..|...-... ..+|
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~------~eEk 77 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ------EEEK 77 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH
Confidence 3334444444444444444445555566777888888888888777666665555555555544432211 1233
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 007027 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (621)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (621)
..|+..+.++. ..+ .. +-.++.+++.-.+.|+.++..|....+.+-.+
T Consensus 78 -~~Le~e~~e~~-------~~i---~~----l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 78 -EQLEQELREAE-------AEI---AR----LEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp ----HHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHH-------HHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777765 111 11 34456666667777777777776544444333
No 113
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=77 Score=37.83 Aligned_cols=144 Identities=20% Similarity=0.257 Sum_probs=88.6
Q ss_pred HHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhh----hHHHHHhhcC---ChhHHHHHHHHHHHHHHH
Q 007027 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK----DMVLQKLEST---KNSEVLTMKEKVKSLEEQ 349 (621)
Q Consensus 277 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k----~~~lekl~~s---~esEv~sLqkKvksLE~q 349 (621)
+-+.|-...++..+.-.+++.++-..+|.+++--+...+-++... +..+-++... .+.++..+.--+..++++
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999999999999999999999888777777666542 1111111111 234444444445555555
Q ss_pred HHHHHHHHHHhHhhhhh---hHHHHHhHHHHHHHHHhHHHhhhhhHH------HHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 350 LKESEIRLQNANACFQT---SQEQLNEMDNFIESLKESLYGAESRAE------SAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 350 Ldes~eQL~~A~aklEe---sE~EVaaLerrIelLKEel~rAEsRa~------tAesKle~LseTNdELerelk~Lesrs 420 (621)
++..-.|+....-+.-+ ...++++-+-.+......++..++-.. .-.+.++.+..++.+...+++.++.+.
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~ 274 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENR 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555544433322 244555666666666666666643322 234566677777777777777776653
No 114
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.74 E-value=71 Score=37.37 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=16.2
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
+++++++..+...+.+...|+.|+++....+
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555544433
No 115
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=86.67 E-value=47 Score=35.20 Aligned_cols=143 Identities=22% Similarity=0.232 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH-----
Q 007027 392 AESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME----- 466 (621)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme----- 466 (621)
++.....|..|+++|.+|-+.+-..+..+. .++..| | +|-..|-.+.+.+
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~st~---~~Vr~l---L-------------------qqy~~~~~~i~~le~~~~ 62 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDSTA---LKVRKL---L-------------------QQYDIYRTAIDILEYSNH 62 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhhHH---HHHHHH---H-------------------HHHHHHHHHHHHHHccCh
Confidence 345566777788888888877776665532 222111 1 1222455555544
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 007027 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (621)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL 546 (621)
.-+++++++|..+++ ..+++.. .|..++..+..++......++-..-.++ +|--.|+=-|-.++.+|
T Consensus 63 ~~l~~ak~eLqe~ee---k~e~~l~-------~Lq~ql~~l~akI~k~~~el~~L~TYkD---~EYPvK~vqIa~L~rql 129 (258)
T PF15397_consen 63 KQLQQAKAELQEWEE---KEESKLS-------KLQQQLEQLDAKIQKTQEELNFLSTYKD---HEYPVKAVQIANLVRQL 129 (258)
T ss_pred HHHHHHHHHHHHHHH---HHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Confidence 346667777777775 3566777 7777777777777776666666665555 66777777788888888
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 547 ATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 547 ~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
+.-.|+-++++-.+.+-.+..-..+-
T Consensus 130 q~lk~~qqdEldel~e~~~~el~~l~ 155 (258)
T PF15397_consen 130 QQLKDSQQDELDELNEMRQMELASLS 155 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887777766555443
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.13 E-value=79 Score=37.29 Aligned_cols=370 Identities=19% Similarity=0.190 Sum_probs=168.2
Q ss_pred HHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhh
Q 007027 92 IEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (621)
Q Consensus 92 ~eka~efDlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qs 171 (621)
.-|-|-|+=|-.-||+++++|.+-=++.+. .|+...+-. +-|=.- -=+.|+.-..--||++|..|--+-+-|
T Consensus 11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~~----srk~L~e~t---refkk~-~pe~k~k~~~~llK~yQ~EiD~LtkRs 82 (629)
T KOG0963|consen 11 YWKRFDLERLQRELDAEATEIAQRQDESEI----SRKRLAEET---REFKKN-TPEDKLKMVNPLLKSYQSEIDNLTKRS 82 (629)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHH----HHHHHHHhH---HHHhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888999999999999887665543 333322211 111110 015688888888999999999887766
Q ss_pred Hhhhhh----hhhcccCCCcccccccccCCccccccccccc-chHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHhh
Q 007027 172 AKFQRV----LSYFIHGNNDEALEFSANGQLSNINGKSKMK-NADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKL 246 (621)
Q Consensus 172 a~f~r~----~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mq-t~eqqR~iLrMLekSla~eldLEkkL~es~~~eeeLk~ 246 (621)
--=+.+ -..+..-+.... + ..+ -.+-..+.+ ..++.|...+-|++-.+.=.|++++ +..+..|+.
T Consensus 83 k~aE~afl~vye~L~eaPDP~p--l-l~s---a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~q----q~~v~~l~e 152 (629)
T KOG0963|consen 83 KFAEAAFLDVYEKLIEAPDPVP--L-LAS---AAELLNKQQKASEENEELKEELEEVNNELADLKTQ----QVTVRNLKE 152 (629)
T ss_pred HhhHHHHHHHHHHHhhCCCCch--H-HHH---HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhh----HHHHHhHHH
Confidence 433333 222222222111 0 000 011111111 3455556666666544433333332 223455555
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHH
Q 007027 247 KLHHTEQV-AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (621)
Q Consensus 247 KL~~~eqe-~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (621)
++.-.++. ..+.+.++...|...- .|..+...| ++...+..+-.+......=+.+.+.++..--+|.......
T Consensus 153 ~l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 153 RLRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 55444443 2345566667776542 233333333 2233333333332222222222222222222221111110
Q ss_pred HHhhcC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--------HHHHHhHHHHHHHHHhHHHhhhh
Q 007027 326 QKLEST-------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS--------QEQLNEMDNFIESLKESLYGAES 390 (621)
Q Consensus 326 ekl~~s-------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes--------E~EVaaLerrIelLKEel~rAEs 390 (621)
+.=... --.++-.-+.++-.+|.+......|+..++.+.... ...+..+++.|..|=.+|.+=++
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 000000 123334445555555665555555555555544332 33444566667666666655444
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 007027 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (621)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIE 470 (621)
-+.....+... -+..||++++....-|+.-+.-... |+ -|++|+.-+.+..
T Consensus 307 S~~~e~e~~~~------------------------qI~~le~~l~~~~~~leel~~kL~~----~s-DYeeIK~ELsiLk 357 (629)
T KOG0963|consen 307 SLVEEREKHKA------------------------QISALEKELKAKISELEELKEKLNS----RS-DYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHhh----hc-cHHHHHHHHHHHH
Confidence 33333322111 1223333333322111111111111 12 6889988887765
Q ss_pred HHhhh-hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 007027 471 DLKSK-VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (621)
Q Consensus 471 dLk~K-l~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL 514 (621)
...=- ...|...-+.+..==..|-+.|..|..|++.||...-.+
T Consensus 358 ~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~ 402 (629)
T KOG0963|consen 358 AIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGL 402 (629)
T ss_pred HhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcccccc
Confidence 22211 112221112222233456688888888888886554433
No 117
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=85.76 E-value=42 Score=33.79 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhh
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (621)
--+..++++|.+....+..+.+.--..+.++...+..++..+.....|
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A 78 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443333444555555555554444433
No 118
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.50 E-value=72 Score=36.30 Aligned_cols=162 Identities=20% Similarity=0.202 Sum_probs=99.7
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
-.+...|.+|.-.|+|.+-..|-|+..+.+.=+ .|-+. +..+ -+|...|++-.-..+.| +.
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~---------rrhrE-il~k----~eReasle~Enlqmr~q-----ql 309 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEE---------RRHRE-ILIK----KEREASLEKENLQMRDQ-----QL 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---------HHHHH-HHHH----HHHHHHHHHHHHHHHHH-----HH
Confidence 457889999999999999999988877654321 11111 1111 14555666655555433 34
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 007027 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (621)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~ 527 (621)
.+.+-+ +.+.++|.-..++.|-+...|...++|.+-.+++ ..-+.=.-+..+| -+..+++.+
T Consensus 310 eeente----lRs~~arlksl~dklaee~qr~sd~LE~lrlql~-------~eq~l~~rm~d~L-------rrfq~ekea 371 (502)
T KOG0982|consen 310 EEENTE----LRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI-------CEQKLRVRMNDIL-------RRFQEEKEA 371 (502)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHhhHH
Confidence 445555 8899999999999999998888888888888777 3322222233333 334455555
Q ss_pred hHHHHHHhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 528 SAKEVNHRTKLMMEMVMQLAT------------------QRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~------------------ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
|. ++|+++...|+. ...-|+..+-.++.+|..|.+..+.
T Consensus 372 tq-------ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq~nr~l~eqnee 428 (502)
T KOG0982|consen 372 TQ-------ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQPNRILSEQNEE 428 (502)
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhccccchhhhhhhh
Confidence 52 333444333322 2334667777788888887655443
No 119
>PRK10869 recombination and repair protein; Provisional
Probab=85.17 E-value=77 Score=36.35 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=23.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH-HHHhHHHHHHHHhhhhh
Q 007027 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS-AIWDMETLIEDLKSKVS 477 (621)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkys-ei~dme~vIEdLk~Kl~ 477 (621)
|.++++.+|..|-... .-.+ ||- ++.++...-+.++.++.
T Consensus 294 dp~~l~~ie~Rl~~l~-----------~L~r----Kyg~~~~~~~~~~~~l~~eL~ 334 (553)
T PRK10869 294 DPNRLAELEQRLSKQI-----------SLAR----KHHVSPEELPQHHQQLLEEQQ 334 (553)
T ss_pred CHHHHHHHHHHHHHHH-----------HHHH----HhCCCHHHHHHHHHHHHHHHH
Confidence 6778888888776654 4444 565 45555554444444443
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.75 E-value=98 Score=36.40 Aligned_cols=135 Identities=18% Similarity=0.177 Sum_probs=72.1
Q ss_pred HhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC----ChhHH-HHHHHHHH
Q 007027 270 LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEV-LTMKEKVK 344 (621)
Q Consensus 270 ~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~esEv-~sLqkKvk 344 (621)
+|-++.++-|.|.+--+..|++-+--.+.-...+.....++....+.+|......+...... ..+++ ..|+..+.
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~ 90 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHH
Confidence 45566778888888777888777666666555555555555444444443322222211111 12333 35666666
Q ss_pred HHHHHHHHHHHHHHHhHhhh-------hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh
Q 007027 345 SLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (621)
Q Consensus 345 sLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (621)
.|-+++.....+++.-.... .+.+..++.++++++.+++........+++..+-..-++.
T Consensus 91 ~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SR 157 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASR 157 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHH
Confidence 66666666555554321111 2235577777777777777665555555554444444433
No 121
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=83.65 E-value=26 Score=37.67 Aligned_cols=46 Identities=11% Similarity=0.152 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccc
Q 007027 253 QVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 303 (621)
Q Consensus 253 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~R 303 (621)
-.+-+--=.|...|==|= ...+.|+-..+...+..++.|..-....
T Consensus 121 lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~ 166 (312)
T smart00787 121 LVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKE 166 (312)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454555666676553 3456777777777777777665444433
No 122
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=83.50 E-value=86 Score=35.55 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
+-+.|+..+++.|... + +...-.|++.|..-..+++-+=+..+++|-.+=.++.-..--+...|+
T Consensus 366 ~ke~E~q~lr~~l~~~------~---~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 366 EKESEIQKLRNQLSAR------A---SSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHHHHHHHHHHHHHH------h---ccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence 4556666666665542 1 122245788886666655554456666555444444444444444454
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.30 E-value=1e+02 Score=36.17 Aligned_cols=37 Identities=5% Similarity=0.114 Sum_probs=20.6
Q ss_pred HhHHHHhhHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH
Q 007027 521 ANIEKAASAKEVNHRTKLMMEMV---MQLATQRELIQKQV 557 (621)
Q Consensus 521 A~q~k~~tlKeae~Rak~aE~lV---~KL~~ErdrLe~ql 557 (621)
|-.|=.+..|-|....+-|.+.+ ..|++|+..|..++
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL 528 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKL 528 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444666666655555543 34666666666554
No 124
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.24 E-value=41 Score=40.29 Aligned_cols=122 Identities=25% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhh
Q 007027 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 458 (621)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk 458 (621)
.+.+..+.--|.|..+|.....-...-||+++.++.-=..---...+|.-+|-.+|.-++.+|+++-. ++..-+ .
T Consensus 66 ~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpe----v 140 (916)
T KOG0249|consen 66 EDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPE----V 140 (916)
T ss_pred cccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhh----h
Confidence 44555566667777777777777888889988876522221112356666666677766667776666 554433 2
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHH
Q 007027 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 512 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lk 512 (621)
-++..+-.. .+.+|+.+-...|..+.-|-..|-+++.||.-.+.+++
T Consensus 141 eael~qr~~-------al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 141 EAELAQRNA-------ALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHH-------HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222111 12233333333444444444444477777766666665
No 125
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.13 E-value=1.3e+02 Score=37.41 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=49.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+.+..-||++.++...+.-.+....-++..+-..+++.+.++..-++.++.+++-...+++.-...+.
T Consensus 275 ~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~ 342 (1072)
T KOG0979|consen 275 EDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIE 342 (1072)
T ss_pred hhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666656666666666655668899999999999899888877777777777776
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.49 E-value=58 Score=32.83 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhh
Q 007027 469 IEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
.++|..+|+.++.+++..+.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.48 E-value=42 Score=31.28 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
.-+.|..++..+..+..........-+..-..+.....-.+.--..|..++..++..+--+..-|++|.+.++.
T Consensus 57 ~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 57 DIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444333333333444445566677777777777777778888777764
No 128
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.79 E-value=1.4e+02 Score=36.77 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 007027 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (621)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (621)
+++++....+++-+..|++.|....++.+-+..+.+++++.+|+++..=...=.....|+.+.
T Consensus 388 ~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di 450 (980)
T KOG0980|consen 388 QEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDI 450 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348888889999999999999999888888888999999999988877665555555554443
No 129
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.96 E-value=87 Score=33.87 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (621)
.++..+=.+-|+.+.++..........-++-..++..|+.++++-..-=++++.-......+..+.++.+ +-+++
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-----~~~~~ 108 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-----LGGRS 108 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----ccCCC
Confidence 3333333334444444444433333334455566777777777776666666665555555555555443 22222
Q ss_pred CCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 007027 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (621)
Q Consensus 421 ~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~EL 500 (621)
+..+++-+.....-.+-.+-.-+...+ +...|+++....++-+..+...+...+.. +++- ++
T Consensus 109 ------~~~ler~i~~Le~~~~T~~L~~e~E~~----lvq~I~~L~k~le~~~k~~e~~~~~~el~-aei~-------~l 170 (294)
T COG1340 109 ------IKSLEREIERLEKKQQTSVLTPEEERE----LVQKIKELRKELEDAKKALEENEKLKELK-AEID-------EL 170 (294)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HH
Confidence 566777777666444444444444444 55566666655554444443333221111 1222 44
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 501 KNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
-.+.+-+.+++..|=...+.+...=-.+ +-++-.++..+-.-+.++...++.+|..+-....+++-+...+..
T Consensus 171 k~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 171 KKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444443332222 555566677788888888899999999999888888888776663
No 130
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.92 E-value=1.4e+02 Score=36.13 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=11.3
Q ss_pred HHHHHHHHhccchHHHHhhhhHHHHhhh
Q 007027 263 EVVWGRFLEAENSAEVLMGISKEMLGRF 290 (621)
Q Consensus 263 ~~~~er~~EAENa~EvL~g~skel~gkL 290 (621)
..+-.++.+..|-.+-+...+.....++
T Consensus 406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~ 433 (908)
T COG0419 406 EEIQEELEELEKELEELERELEELEEEI 433 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333333
No 131
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.05 E-value=88 Score=33.36 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 571 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekl 571 (621)
.|+.++..+-.....+|..+.. +.....--.+++.+|+......+.+...+. +-+.++...
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~~-----------L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~ 226 (265)
T COG3883 166 ALEDKLETLVALQNELETQLNS-----------LNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAA 226 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 4555555555555555554433 333334445566666666666666666665 444444433
No 132
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=79.58 E-value=91 Score=37.61 Aligned_cols=81 Identities=27% Similarity=0.309 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 007027 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (621)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (621)
++.++..+.+|+.+|-.+|.-.+.+|..+-. ++...+==+.+.+++. .+..|+++..+.++.+..+...+++++-
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~----al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNA----ALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHH----HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777777766655 4444333344555554 3456666666666666666666666666
Q ss_pred Hhhhhh
Q 007027 412 EINFLK 417 (621)
Q Consensus 412 elk~Le 417 (621)
++--.+
T Consensus 178 eL~rar 183 (916)
T KOG0249|consen 178 ELQRAR 183 (916)
T ss_pred HHHHHH
Confidence 655333
No 133
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.44 E-value=21 Score=36.32 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNAN 361 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~ 361 (621)
++...+..+|.++.+...+|.++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554443
No 134
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.48 E-value=94 Score=32.78 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=4.7
Q ss_pred HHHHhhhhhhhh
Q 007027 469 IEDLKSKVSKAE 480 (621)
Q Consensus 469 IEdLk~Kl~rAE 480 (621)
+.+++.++..++
T Consensus 255 l~~~~~~l~~~~ 266 (423)
T TIGR01843 255 LAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 135
>PRK10698 phage shock protein PspA; Provisional
Probab=78.35 E-value=83 Score=32.10 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhhh
Q 007027 474 SKVSKAESKTESV 486 (621)
Q Consensus 474 ~Kl~rAE~RaE~a 486 (621)
.|+.+.|.+++..
T Consensus 173 ~ki~~~Ea~aea~ 185 (222)
T PRK10698 173 RRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHhHh
Confidence 5555666666654
No 136
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.98 E-value=1.3e+02 Score=34.26 Aligned_cols=17 Identities=12% Similarity=0.393 Sum_probs=11.9
Q ss_pred CchhhhhhHHHHHHHHH
Q 007027 422 SNTKKVGILENQLRDLE 438 (621)
Q Consensus 422 ~deEK~~~LE~QLKEa~ 438 (621)
.|.++++.++.+|-..+
T Consensus 298 ~dp~~L~ele~RL~~l~ 314 (563)
T TIGR00634 298 FDPERLNEIEERLAQIK 314 (563)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 36778888888776554
No 137
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.98 E-value=16 Score=36.00 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=47.8
Q ss_pred HhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 007027 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (621)
Q Consensus 287 ~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (621)
-.++-..+-+|..+-+.=+++..+|.... .++..+..++......+......+.....++..
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~------------------~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELN------------------DELQELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc------------------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554443 333344445555555555555555555555555
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
...++..++..|+.|.+++.--.-....++.|+..+.+-|.+|=.-
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888888888888888888888888888888888887553
No 138
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.58 E-value=62 Score=30.20 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=7.2
Q ss_pred HhhhhhHHHHHHHHHHHhh
Q 007027 386 YGAESRAESAEEKVTQLTD 404 (621)
Q Consensus 386 ~rAEsRa~tAesKle~Lse 404 (621)
..|+.+.+.-..+.....+
T Consensus 41 ~~Aq~~YE~El~~Ha~~~~ 59 (132)
T PF07926_consen 41 QEAQQKYERELVKHAEDIK 59 (132)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3334443333333333333
No 139
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.53 E-value=1.7e+02 Score=35.32 Aligned_cols=73 Identities=10% Similarity=0.221 Sum_probs=42.0
Q ss_pred ccccchhhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHhHHHHHHHHHhhhh
Q 007027 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIV 124 (621)
Q Consensus 52 ~~a~~SEKl~NL--~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDl---L~gildsEv~ele~~~~~lq~~i~ 124 (621)
|+...=+.++.| .+|..-|.-+-..|-.+...+..-=..-+.+.|..|. ++-.+-.-++++..-+..++..+.
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566554 6888888888888887765554432344555565555 333333444555555555555554
No 140
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.40 E-value=49 Score=33.30 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=73.8
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 007027 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (621)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (621)
.+.-|+--=||......|=..|-+--.+...-++.++..=.++..- +.+...+..++..||..+-+.+.+.+.....-+
T Consensus 77 tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke 155 (190)
T PF05266_consen 77 TLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEKKE 155 (190)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665555554444444444443333333322333322 345566777888888888888888888888888
Q ss_pred hhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 366 TSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
+...+|+.|...+..+++++..++-+-++..
T Consensus 156 ~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 156 AKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999998887754
No 141
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.03 E-value=1.9e+02 Score=35.51 Aligned_cols=86 Identities=17% Similarity=0.287 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN 406 (621)
+.+.-+..|.++|+-+|...+.+++....++-.. ..+|..|...+++.-.+++.-..|+..-..|+..|.---
T Consensus 430 e~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 430 EWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4555566677777777777777666655554332 446666666666666666666666666666776666666
Q ss_pred HHHHHHhhhhhcC
Q 007027 407 LELSEEINFLKGN 419 (621)
Q Consensus 407 dELerelk~Lesr 419 (621)
.+|+..++-....
T Consensus 510 q~l~~qlkq~q~a 522 (1118)
T KOG1029|consen 510 QELNHQLKQKQSA 522 (1118)
T ss_pred HHHHHHHHHhhhh
Confidence 6666666544443
No 142
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=76.93 E-value=2.2e+02 Score=36.31 Aligned_cols=123 Identities=14% Similarity=0.249 Sum_probs=72.4
Q ss_pred HHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH-HHHhHhhhhhhHHHHHhHHHHHHHHHhHHH
Q 007027 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR-LQNANACFQTSQEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ-L~~A~aklEesE~EVaaLerrIelLKEel~ 386 (621)
-..|..+++++..-...|+.+... .+.+..+....+.|... +......+-....++..+.+.+..+..++.
T Consensus 222 i~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1353)
T TIGR02680 222 LTDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELE 293 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555444432 12333333444444442 222222222236677788888888888888
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC-CchhhhhhHHHHHHHHH
Q 007027 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNND-SNTKKVGILENQLRDLE 438 (621)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~-~deEK~~~LE~QLKEa~ 438 (621)
.++.+...++.++..+...-.++..++..|++... .+-+.+..++.|++...
T Consensus 294 ~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~ 346 (1353)
T TIGR02680 294 TAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQ 346 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877632 11233344444554443
No 143
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=76.88 E-value=1.6e+02 Score=34.68 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=84.5
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHH
Q 007027 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSL 346 (621)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksL 346 (621)
..+.|-.|+.-.|.+.--++-.+||+-|+--+-...+=+++..+|.... ++++. ++.|+..|+..-..+
T Consensus 167 ~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~----------e~le~-K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 167 EQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK----------EKLEL-KSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHh-hhHHHHHHHHHHHHH
Confidence 4445555555555555555555555555433322222223333333333 34444 367788888877777
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-------HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 347 EEQLKESEIRLQNANACFQTSQE-------QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 347 E~qLdes~eQL~~A~aklEesE~-------EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (621)
-.+|..|....+......++..- -+..|.+--.--+..+..+-.-+..+...++.++.-|.+|...+..+-..
T Consensus 236 ~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~ 315 (617)
T PF15070_consen 236 LGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALP 315 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCC
Confidence 77777776665555544444311 23455554444556677778888899999999999999999988754333
No 144
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.67 E-value=1.2e+02 Score=32.93 Aligned_cols=46 Identities=4% Similarity=0.015 Sum_probs=22.1
Q ss_pred HHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Q 007027 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRE 551 (621)
Q Consensus 505 ~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~Erd 551 (621)
+.++..+..++............| ..+.-..++++.+-..|-..++
T Consensus 321 ~~l~~~l~~~~~~~~~l~~~~~~~-~~L~r~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 321 AELREALENQKAKVLELNRQRDEM-SVLQRDVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455554444 3344445555555555544443
No 145
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=76.65 E-value=76 Score=33.75 Aligned_cols=138 Identities=17% Similarity=0.118 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhc
Q 007027 251 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 330 (621)
Q Consensus 251 ~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~ 330 (621)
..+-..|+++-...+-.++-+|+....-++.....+- +.+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d---------~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFD---------PKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4556778888888888888888888777766433221 1110111112233333333333322222222212
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 007027 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (621)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (621)
...+.+..++.++..|+.+++.-..++..... ..+++.....+.|+.++.-|+...+.+..+++++.
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~------~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGGLG------DSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcCCC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23799999999999999999887766654321 12344444566777777788888888888777766
No 146
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.55 E-value=75 Score=30.65 Aligned_cols=10 Identities=30% Similarity=0.611 Sum_probs=3.6
Q ss_pred HHhhHHHHHh
Q 007027 310 KLGDFIEQLK 319 (621)
Q Consensus 310 KL~~~~eqL~ 319 (621)
++..+..++.
T Consensus 82 e~~~~~~~l~ 91 (191)
T PF04156_consen 82 ELSELQQQLQ 91 (191)
T ss_pred hHHhHHHHHH
Confidence 3333333333
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.44 E-value=70 Score=34.43 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=35.9
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 357 LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 357 L~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
|..+++++.....++..+.+.+..++.++..-..+++....+..++...-.++++.+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666666667777777777777776666666666666666655444
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.87 E-value=55 Score=30.80 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (621)
.++...|...+..|+.++..++-.+..+....-....++.++...+...++++-+....+++..++|.
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777666666666665555667777777777777777777777666666554
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.82 E-value=99 Score=32.04 Aligned_cols=110 Identities=21% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHH
Q 007027 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (621)
Q Consensus 375 errIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (621)
+|.-..|++.+...++-+..|...+.....++..|..+++..+.- ...|+..-.++..-.+.-...+....+.
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee-------a~~Le~k~~eaee~~~rL~~~~~~~~eE 76 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE-------AEELEQKRQEAEEEKQRLEEEAEMQEEE 76 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555554442 2333333333322222222333333333
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 455 Q~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+..+-..+......|..|.....+.+..+.....+..
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566777777777666666666655444444444
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.65 E-value=1e+02 Score=33.38 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhh
Q 007027 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 429 (621)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~ 429 (621)
|+..+..|+..+-+.+.-..++++|.|.++.|=+ -|..+.++.+-+.-++.+=++ .+..
T Consensus 41 leSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e--------------~c~~lek~rqKlshdlq~Ke~-------qv~~ 99 (307)
T PF10481_consen 41 LESLEAALQKQKQKVEEEKNEYSALKRENQSLME--------------SCENLEKTRQKLSHDLQVKES-------QVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH--------------HHHHHHHHHHHhhHHHhhhHH-------HHHH
Confidence 3344444444444444445577788887776543 466677777777776665554 3778
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhh
Q 007027 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (621)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK 489 (621)
||+||--++ . .|.+++.=|.-+|+.++|+..-+-.+...
T Consensus 100 lEgQl~s~K-------k--------------qie~Leqelkr~KsELErsQ~~~~~~~~s 138 (307)
T PF10481_consen 100 LEGQLNSCK-------K--------------QIEKLEQELKRCKSELERSQQAASSGDVS 138 (307)
T ss_pred HHHHHHHHH-------H--------------HHHHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 888776654 1 33344445556677777877665555543
No 151
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=75.30 E-value=1.9e+02 Score=34.79 Aligned_cols=194 Identities=22% Similarity=0.294 Sum_probs=104.1
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchH--------HHH
Q 007027 208 KNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSA--------EVL 279 (621)
Q Consensus 208 qt~eqqR~iLrMLekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~--------EvL 279 (621)
+|.+-||--++=|. ...| .|=-+|.+--+-.++|.-+-+.+-+ .+ -...+.|.|..|.-+.- .++
T Consensus 113 k~IEaqrKaIqELQ--f~NE-~lSlKLee~i~en~dL~k~nnaTR~-lC---NlLKeT~~rsaEK~~~yE~EREET~qly 185 (786)
T PF05483_consen 113 KIIEAQRKAIQELQ--FENE-KLSLKLEEEIQENKDLRKENNATRH-LC---NLLKETCQRSAEKMKKYEYEREETRQLY 185 (786)
T ss_pred HHHHHHHHHHHHHH--Hhhh-HHhHHHHHHHhhHHHHHHhhhHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666555443 3333 0112344444445666666665554 22 23445555555444333 333
Q ss_pred hhhh---HHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007027 280 MGIS---KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (621)
Q Consensus 280 ~g~s---kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (621)
++.+ .-|+..+++..+.--++. -|+..||+...++..+-+....+=-..++.+|.-|+-+...=|+.+++....
T Consensus 186 ~~l~~niekMi~aFEeLR~qAEn~r---~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~ 262 (786)
T PF05483_consen 186 MDLNENIEKMIAAFEELRVQAENDR---QEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLL 262 (786)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 3333 345566666655433333 2566799999888887666665544446777777777777777777766666
Q ss_pred HHHhHhhh---hh-----------hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 007027 357 LQNANACF---QT-----------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (621)
Q Consensus 357 L~~A~akl---Ee-----------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (621)
|+...... ++ +..+.-++...+.+.|-.+-++++--..-+..+..++++-.++.+
T Consensus 263 l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~ 331 (786)
T PF05483_consen 263 LQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTE 331 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444332 21 122444555566666666666555444444444444444444443
No 152
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.95 E-value=1.2e+02 Score=32.10 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=15.2
Q ss_pred HHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 007027 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (621)
Q Consensus 407 dELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (621)
.+++|-.+.++. +......++..+.++..++.+++
T Consensus 135 ~~~~R~~~L~~~-g~vS~~~~~~a~~~~~~a~~~l~ 169 (346)
T PRK10476 135 RTLERLEPLLAK-GYVSAQQVDQARTAQRDAEVSLN 169 (346)
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHHHHHHHHHHHH
Confidence 445555554443 33333344444444444443333
No 153
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=74.79 E-value=1e+02 Score=31.24 Aligned_cols=113 Identities=23% Similarity=0.364 Sum_probs=75.4
Q ss_pred HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 007027 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (621)
Q Consensus 318 L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (621)
|.+|...++.|+ .|+.+...-|...-..|-.++.....|.........++..|...+...+..+..++..+..+..
T Consensus 62 L~GKq~iveqLe----~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLE----QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 3455555555555555555655555565555556779999999999999999999988888776
Q ss_pred HHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhh
Q 007027 398 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (621)
Q Consensus 398 Kle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (621)
.+.+ ....|+. --.|++.|.+||..++.-++..+..+
T Consensus 138 el~e----------K~qLLea----Ak~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAE----------KTQLLEA----AKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHH----------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 3333333 12579999999999988777766443
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.39 E-value=33 Score=34.85 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=22.1
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (621)
+...+..|++.++.|++++..+..+...++.++..+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666555555443
No 155
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=74.29 E-value=34 Score=30.48 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhh
Q 007027 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (621)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~ 415 (621)
|..++..||.-++.--..... ...++..|+.|..+-.+=..++..++..|..+..+|.|..+.|+.
T Consensus 13 L~~aid~LE~~v~~r~~~~~~-----------~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 13 LEAAIDRLEKAVDRRLERDRK-----------RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555443333322 245666667777777777777777777888888888888887763
No 156
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.64 E-value=2.2e+02 Score=34.57 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCch--hhhhhHHHHHHHHHHHHHHhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT--KKVGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~de--EK~~~LE~QLKEa~~QLqhA~ 445 (621)
.+-|--|+....-.++.+.+...+++.-++++.-+..|||+....+- .++|.-.|+ ++-..|=.|+-+.+.-|+.+.
T Consensus 522 ~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlq-k~nrlkQdear~~~~~lvqqv~dLR~~L~~~E 600 (961)
T KOG4673|consen 522 QETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQ-KENRLKQDEARERESMLVQQVEDLRQTLSKKE 600 (961)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888999999999999999999999999999877331 233321111 122333344444433333332
Q ss_pred hhhHhHHHHHhhhHHHHHhHH----HHHHHHhhhhhhhhhhhhhh
Q 007027 446 VSSEASQEQQSMLYSAIWDME----TLIEDLKSKVSKAESKTESV 486 (621)
Q Consensus 446 asaEas~eqQ~mkysei~dme----~vIEdLk~Kl~rAE~RaE~a 486 (621)
. .++|.+ .=|+||+-.|.-||-|++..
T Consensus 601 q--------------~aarrEd~~R~Ei~~LqrRlqaaE~R~eel 631 (961)
T KOG4673|consen 601 Q--------------QAARREDMFRGEIEDLQRRLQAAERRCEEL 631 (961)
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222 45788888888888875543
No 157
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.90 E-value=2.8e+02 Score=35.51 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=17.7
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccc
Q 007027 99 DLLFGILDSELREVERLLDTIHVEIVNVHH 128 (621)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~i~~~~~ 128 (621)
|.-..=|+..+..++..+..+...+..+..
T Consensus 424 ~~~r~~l~~~~~~~~~~i~~L~~~~~~~e~ 453 (1353)
T TIGR02680 424 DARRQDADRVIAQRSEQVALLRRRDDVADR 453 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666655554443
No 158
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=72.83 E-value=1.8e+02 Score=33.41 Aligned_cols=189 Identities=17% Similarity=0.224 Sum_probs=111.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHH
Q 007027 246 LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 325 (621)
Q Consensus 246 ~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~l 325 (621)
-++..+++-.+-.|+.+ -+-||+.|-+...-+.-....+-+.++.+...|+.....|..-+.......+....-...+
T Consensus 75 ~~~~~ie~~L~~ae~~~--~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~l 152 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYA--DKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKEL 152 (560)
T ss_pred HhhHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555553 3568888888888888888888888888888888888888777777777666666543333
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 007027 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-----NANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (621)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~-----~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (621)
-.-..+=-+=+..|.+++..+|.+|.++..-.. .|..-+.....++..++..+..+-.=+.......-.- +.
T Consensus 153 l~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~q---l~ 229 (560)
T PF06160_consen 153 LAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQ---LE 229 (560)
T ss_pred HHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHH---HH
Confidence 322222134456788888888888888877432 3444444445566666666666665555554444332 23
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHH
Q 007027 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (621)
Q Consensus 401 ~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QL 441 (621)
++...=.++.++==.|..-. -.+.+..++.++..+...|
T Consensus 230 eL~~gy~~m~~~gy~l~~~~--i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 230 ELKEGYREMEEEGYYLEHLD--IEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHHHHHHHHHH
Confidence 33333333333211122111 1445566666666555444
No 159
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.27 E-value=94 Score=33.85 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=12.9
Q ss_pred HHHHHHhhhhcccceecccc
Q 007027 115 LLDTIHVEIVNVHHKISSCK 134 (621)
Q Consensus 115 ~~~~lq~~i~~~~~~~~s~~ 134 (621)
-++.++..+..|+.++.++.
T Consensus 33 ~I~~~~l~~~~A~~kF~~~~ 52 (388)
T PF04912_consen 33 DIERSRLNPDEARSKFKGAR 52 (388)
T ss_pred chhhcCCCHHHHHHHhCcCc
Confidence 36666667777777665554
No 160
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.86 E-value=62 Score=31.20 Aligned_cols=37 Identities=35% Similarity=0.460 Sum_probs=13.6
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
+..+++......+-.....+++..+......+.++..
T Consensus 111 l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~ 147 (191)
T PF04156_consen 111 LEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIR 147 (191)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 161
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.48 E-value=1.9e+02 Score=32.98 Aligned_cols=167 Identities=23% Similarity=0.334 Sum_probs=97.7
Q ss_pred HHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhh
Q 007027 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (621)
Q Consensus 400 e~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rA 479 (621)
..++--...|+...+-|++..-.+-+| |=+-+.+.+--++.-+..--+-++|+..+-++|.-+.++..|++.=+-++
T Consensus 219 ~al~llv~tLee~~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i 295 (446)
T KOG4438|consen 219 NALKLLVVTLEENANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKI 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 334444555666666677665444444 33345555555566555555666777778889999999999998877777
Q ss_pred hhhh---hhhhhhhhhhccchhhHHHHHHHHHhhH---HHHHHHHHHHhH---HHHhh----------------------
Q 007027 480 ESKT---ESVEEQCIVLSEDNFELKNKQSFMRDKI---KILESSLNRANI---EKAAS---------------------- 528 (621)
Q Consensus 480 E~Ra---E~aEsK~~~Lse~N~ELeEEL~~l~~~l---ksLE~sl~kA~q---~k~~t---------------------- 528 (621)
.+-. ++.|.+.++| ..|++|+.........+ +-+|+...+.+. .+.+.
T Consensus 296 ~~~~~e~d~~Et~~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~ 374 (446)
T KOG4438|consen 296 SSDGVEYDSLETKVVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEK 374 (446)
T ss_pred HHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7766 7777777754 56778877655433322 222332222222 22222
Q ss_pred -----------HHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007027 529 -----------AKEVNHRTKLMMEMVM--QLATQRELIQKQVYSLTSENKLLVEK 570 (621)
Q Consensus 529 -----------lKeae~Rak~aE~lV~--KL~~ErdrLe~ql~s~keenK~L~ek 570 (621)
.+.++.....+...=. +++..|..++.|+.+...++-.+...
T Consensus 375 ~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 375 YNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred hcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222 66788888888888888888776544
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.91 E-value=1.2e+02 Score=30.53 Aligned_cols=53 Identities=28% Similarity=0.329 Sum_probs=28.3
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (621)
++...|+.-+.++..+....+++-..-..|...|.+-++.++.+..+...+|.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655555544444344555555555555555555554443
No 163
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.60 E-value=2.5e+02 Score=33.90 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-----------------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~k 561 (621)
.|++.++.+.++...+...+-...+..+.+ +...+..-+-+.+.+..+..+++.+......+-
T Consensus 528 ~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rle 607 (698)
T KOG0978|consen 528 KLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLE 607 (698)
T ss_pred HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888877777777777766666 222333444556666777777777777778888
Q ss_pred HhhhHHHHHHhhcCCCCc
Q 007027 562 SENKLLVEKLQYSGKSSS 579 (621)
Q Consensus 562 eenK~L~ekld~t~~~~~ 579 (621)
+++..|..++..+++..+
T Consensus 608 EE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 608 EELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHhccccc
Confidence 888888888888886655
No 164
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=70.26 E-value=99 Score=29.21 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=62.5
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHH
Q 007027 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTK 537 (621)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak 537 (621)
+-+.|++++.=+--|+..+.+.+..-+.+...++-|+..|-++ +.....+..|+..+.....+-+.++.=+|-+.+
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5668888887777788888888877777888888666555433 344445556666665555555555655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007027 538 LMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (621)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ek 570 (621)
- ++-|+..|.-+|.=|+...+.
T Consensus 97 ~-----------veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 97 E-----------VEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 4 455555555666666655543
No 165
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.93 E-value=36 Score=38.68 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
.|..+++.++..-+..|..+.+.+.+-.+-
T Consensus 365 ~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~ 394 (493)
T KOG0804|consen 365 SLKQESSDLEAEKKIVERKLQQLQTKLKKC 394 (493)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554444444444444433333
No 166
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.39 E-value=1.9e+02 Score=32.07 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=55.0
Q ss_pred HHHHHhhHHHHHHHHHHHhHHHHhh--------HHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 504 QSFMRDKIKILESSLNRANIEKAAS--------AKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 504 L~~l~~~lksLE~sl~kA~q~k~~t--------lKeae~R-ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
+..+.+.+..++..+.++....... ..++..| ..+..+-......+++.++.++.............++.+
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344444555555554444443331 2233334 444555666778888999999999999999999999999
Q ss_pred CCCCceeeecc
Q 007027 575 GKSSSATMYNA 585 (621)
Q Consensus 575 ~~~~~~~~~~~ 585 (621)
..-+|++=++.
T Consensus 318 ~I~AP~dG~V~ 328 (457)
T TIGR01000 318 VIKAPEDGVLH 328 (457)
T ss_pred EEECCCCeEEE
Confidence 99999887665
No 167
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=68.79 E-value=88 Score=33.60 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
.-+.+.-|+++++..-.--++-..-.-+|.++||-|++.
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 334455555655555544455555566677777777763
No 168
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=67.56 E-value=2.2e+02 Score=32.28 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=42.1
Q ss_pred HHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHH
Q 007027 316 EQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (621)
Q Consensus 316 eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (621)
.+|++-...+..+..+ ...+...|++-++++|.++.....++..+...+......|++++..++-|+..-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555544444 345566666666666666666666666666666666666666666666665544
No 169
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=67.31 E-value=53 Score=32.43 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=26.1
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHh---HHHH
Q 007027 463 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR---TKLM 539 (621)
Q Consensus 463 ~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~R---ak~a 539 (621)
..+...+-.|+.++.-+-..-.....+++-++..+-+|..++.....++..|+........+-...-.++..+ ...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444443333333344455555555555555555555555555544443333322222222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007027 540 MEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (621)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (621)
.|=..-|+.+..-+++++..+..+|+.|++
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333444444455555555555555544
No 170
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=66.49 E-value=75 Score=34.35 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdE 408 (621)
...+..+++++..|...++.|..++..-....... -..+++..+.+..+-.++.+++.|+..+.+|......+-..
T Consensus 87 ~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~ 166 (301)
T PF06120_consen 87 KRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLND 166 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888877776654422111111 23467788888888888999999999999888877766555
Q ss_pred HHHHh
Q 007027 409 LSEEI 413 (621)
Q Consensus 409 Lerel 413 (621)
+.+.+
T Consensus 167 ~~~~~ 171 (301)
T PF06120_consen 167 LTEQR 171 (301)
T ss_pred HHHHH
Confidence 44443
No 171
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=66.48 E-value=2.6e+02 Score=33.08 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=79.5
Q ss_pred hhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhH------HHHhhhhHHhhhccccccchhHHHHHH
Q 007027 238 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK------EMLGRFQIVQFNLNGSLQRESELKSKL 311 (621)
Q Consensus 238 ~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~sk------el~gkLq~~qf~L~as~~REsel~sKL 311 (621)
..+...+..|...+.+-..|+++-...+..++-.+|++.+-++-..+ +....++.+ .+++.++
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~l~~ql 320 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VNVDNQL 320 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HHHHHHH
Confidence 34556677777777777777777777777777777777777765322 111111111 1122222
Q ss_pred hhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhh
Q 007027 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (621)
Q Consensus 312 ~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (621)
.++..+...+...-....+.+..|+.+..+|+.++.....++. .+...++....|+.++.-++.-
T Consensus 321 ----~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~-----------~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 321 ----NELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVS-----------AMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred ----HHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHH
Confidence 2222223333332233578899998888888777666554443 2334455555566666666666
Q ss_pred HHHHHHHHHHHh
Q 007027 392 AESAEEKVTQLT 403 (621)
Q Consensus 392 a~tAesKle~Ls 403 (621)
......|..++.
T Consensus 386 Y~~lL~r~~e~~ 397 (726)
T PRK09841 386 YLQLLNRQQELS 397 (726)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 172
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.45 E-value=2.4e+02 Score=32.12 Aligned_cols=10 Identities=70% Similarity=0.800 Sum_probs=4.6
Q ss_pred ccchhcchHH
Q 007027 602 AGATVKTSED 611 (621)
Q Consensus 602 ~~~~~~~~~~ 611 (621)
+|++|+...|
T Consensus 330 ~Ga~V~A~Ad 339 (420)
T COG4942 330 AGATVKAIAD 339 (420)
T ss_pred CCCeeeeecC
Confidence 3445554443
No 173
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.29 E-value=1.2e+02 Score=28.67 Aligned_cols=70 Identities=27% Similarity=0.331 Sum_probs=38.1
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
.+.|..++..+.-+++++.+.+..-..+...+-.++..|+++....+ ++..|+.++++.+.+.+-+--+
T Consensus 22 ~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~-----------~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 22 QSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK-----------EVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555566666666665543332 4556666776666444444433
Q ss_pred h
Q 007027 448 S 448 (621)
Q Consensus 448 a 448 (621)
-
T Consensus 91 l 91 (120)
T PF12325_consen 91 L 91 (120)
T ss_pred h
Confidence 3
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=64.27 E-value=3.9e+02 Score=33.88 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHH
Q 007027 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455 (621)
Q Consensus 424 eEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ 455 (621)
.++++.+-.|-..++.+++.....-...++|-
T Consensus 278 t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 278 AQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788887777777777777776655555533
No 175
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.91 E-value=1.5e+02 Score=29.89 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
.++.++...-..+-+..+..+.++....+.....+++++.+++.|-.|++.....-..-+.+...+..+...+..++.+
T Consensus 96 ~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 96 NKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444555555555555554444455777777777777777765444444444443333333333333333
No 176
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.43 E-value=3.7e+02 Score=33.26 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhHHHh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~r 387 (621)
-|+.+|+.|+++|...|-++...+..++..++.. -+++..+..+|+++-+++-+
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455777788888888777777777666666553 44666666666666665543
No 177
>PF15294 Leu_zip: Leucine zipper
Probab=63.23 E-value=1.2e+02 Score=32.64 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=59.4
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc-------CC--CCchhhhhhHHHHHHHHHHH
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG-------NN--DSNTKKVGILENQLRDLEIQ 440 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les-------rs--~~deEK~~~LE~QLKEa~~Q 440 (621)
-.+-++..|..|.++-.+..+|+.+.+..|...-+-...++..++.|+. +. ......+.-||.++.-++.+
T Consensus 126 ~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 126 GSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 4456888899999999999999999999999999999999999988887 21 22345566688888777766
Q ss_pred HHHh
Q 007027 441 LQQA 444 (621)
Q Consensus 441 LqhA 444 (621)
++.+
T Consensus 206 ~ek~ 209 (278)
T PF15294_consen 206 LEKA 209 (278)
T ss_pred HHHH
Confidence 6665
No 178
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.15 E-value=37 Score=28.76 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhh
Q 007027 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (621)
Q Consensus 345 sLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (621)
.+..+|..+......+..++.+++....+|...|..|+.+++...+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666666666777777777777777665544
No 179
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.12 E-value=2.2e+02 Score=30.59 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (621)
.|+-.+.++++..|+.+++...++....+.+-..+.+-+.|..+|..++.+|.+
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555444444444444444444444444443
No 180
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=63.02 E-value=4.4e+02 Score=34.03 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=80.8
Q ss_pred HHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHHHHHHHHHHHH
Q 007027 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (621)
Q Consensus 143 ~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLek 222 (621)
|.++.........++....-.+...++..-.+.|.++...+-.. -+++...=++.
T Consensus 821 ~~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~-------------------------e~k~~~~~~~~ 875 (1294)
T KOG0962|consen 821 VDELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRN-------------------------ELKEEKQKIER 875 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHH
Confidence 44557777777888888888888889999999999988663222 13444555677
Q ss_pred hhhhhhhhhHhhHHHhhhHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHHhc---cchHHHHhhhhHHHHhhhhHHhh
Q 007027 223 SLARELDLEKKISELNQNEEQLKLKLHHTE----QVAFRMEEAAEVVWGRFLEA---ENSAEVLMGISKEMLGRFQIVQF 295 (621)
Q Consensus 223 Sla~eldLEkkL~es~~~eeeLk~KL~~~e----qe~~~lEE~~~~~~er~~EA---ENa~EvL~g~skel~gkLq~~qf 295 (621)
+|++---||..+++.+.-.--+..++.... ..+..++++..+...-..++ +=.++-.+...++....|+.+++
T Consensus 876 ~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~ 955 (1294)
T KOG0962|consen 876 SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYK 955 (1294)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887775555555554433 33445555555444433332 22223334555666777776664
No 181
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.94 E-value=1.8e+02 Score=29.45 Aligned_cols=173 Identities=22% Similarity=0.256 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHh---hhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG---AESRAESAEEKVTQLTDTNLELSEEINFLK 417 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r---AEsRa~tAesKle~LseTNdELerelk~Le 417 (621)
.|++.|.+++.+.+-.+...... +..|+.--.| |=.+...+.+.+-.+ -..-+.++.+|+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~E--------------Nk~Lk~lq~Rq~kAL~k~e~~e~~Lpql---l~~h~eEvr~Lr 74 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKE--------------NKTLKQLQKRQEKALQKYEDTEAELPQL---LQRHNEEVRVLR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHH
Confidence 45666666666555554444322 3333333322 333333444443322 233344555555
Q ss_pred cCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 007027 418 GNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (621)
Q Consensus 418 srs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N 497 (621)
.+-...-++...+++.+++.+.+|+. .-+++.++..+++ .+ .-.+| +....+..
T Consensus 75 ~~LR~~q~~~r~~~~klk~~~~el~k--------------~~~~l~~L~~L~~---dk--nL~eR-eeL~~kL~------ 128 (194)
T PF15619_consen 75 ERLRKSQEQERELERKLKDKDEELLK--------------TKDELKHLKKLSE---DK--NLAER-EELQRKLS------ 128 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH---cC--CchhH-HHHHHHHH------
Confidence 54222234555666666665533332 3445555555555 22 11112 23344444
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007027 498 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQV 557 (621)
Q Consensus 498 ~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql 557 (621)
.++..+..-..+++.|+-+++-++..=..-+.--..+..-+..-|..|..|+++|...|
T Consensus 129 -~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 129 -QLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544443322222222223334555555666666666666554
No 182
>PRK11519 tyrosine kinase; Provisional
Probab=62.63 E-value=2.2e+02 Score=33.68 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 007027 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (621)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (621)
..+.+.+|..+...|+.++...+.++.. +...++.+..|+.++.-++.-......|.+++.
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~l~~~~~~-----------lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 337 EHPAYRTLLEKRKALEDEKAKLNGRVTA-----------MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888877777777666665544332 334456666777777777777777777777654
No 183
>smart00338 BRLZ basic region leucin zipper.
Probab=62.48 E-value=46 Score=27.27 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007027 516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (621)
Q Consensus 516 ~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (621)
.+..+.-+++..|+.+++.+....+.-...|..+++.|..++..++..+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677889999999999999999988889888888888888887665
No 184
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.46 E-value=40 Score=30.13 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=51.1
Q ss_pred hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHH
Q 007027 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 287 (621)
Q Consensus 229 dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~ 287 (621)
.+++...+.+...-.+...++..++.+..|+-.-...-.++|+|....+.|....+-+-
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777777888888888999999999999999999999999999999999988766543
No 185
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=62.03 E-value=1.1e+02 Score=27.74 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=31.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
..++..|.++++..+..|.+..+.|+.++.......+.+
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888999998888888888888888887776665543
No 186
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.71 E-value=2.4e+02 Score=30.53 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHH
Q 007027 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIE 470 (621)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIE 470 (621)
+..++...+-+.-+..-|++.++. + .+..+|.+++.+....|.-+.-.+..+++|..-|..-.+-+.+.+
T Consensus 28 ~f~~~reEl~EFQegSrE~Eaele---s-------qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Le 97 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELE---S-------QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543 2 367777777777777777777777777777766766666666666
Q ss_pred HHhhhhhhhhh
Q 007027 471 DLKSKVSKAES 481 (621)
Q Consensus 471 dLk~Kl~rAE~ 481 (621)
.++++.-.
T Consensus 98 ---ddlsqt~a 105 (333)
T KOG1853|consen 98 ---DDLSQTHA 105 (333)
T ss_pred ---HHHHHHHH
Confidence 66664443
No 187
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=61.62 E-value=2.2e+02 Score=34.16 Aligned_cols=116 Identities=26% Similarity=0.357 Sum_probs=85.0
Q ss_pred ccchHHHHHHHH--HHH-HhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhh
Q 007027 207 MKNADQQRHILR--MLE-KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGIS 283 (621)
Q Consensus 207 mqt~eqqR~iLr--MLe-kSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s 283 (621)
.+.--|--.+|| -+. .-+|++ .+++...-....-+.--.+|....+++..+.+.++.+-+|+=+|..--+.|+--.
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455665 222 334443 5677777777766777778999999999999999999999999999999999988
Q ss_pred HHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHH
Q 007027 284 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (621)
Q Consensus 284 kel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~le 326 (621)
+.++.+++ ..+-....-|.+.+..|+....++.+-...++
T Consensus 617 ~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 617 DRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred HHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775 44566667788888888888877765444443
No 188
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=61.57 E-value=1.1e+02 Score=29.77 Aligned_cols=65 Identities=18% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~---EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
++.....++..++.+++.+..||..++..++.... .+.+|...|+.|+.+...+....+.-....
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~ 81 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQM 81 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777777788888888777777766544 666777788888887776655555444433
No 189
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=61.43 E-value=2e+02 Score=29.67 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=24.2
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
.+..+..++..++..+..|..++.. +..+++|-.+.++.. .....-++..+.++..++
T Consensus 102 ~~~~~~~~i~~~~~~~~~a~~~l~~---a~~~~~r~~~L~~~g-~is~~~~~~a~~~~~~a~ 159 (334)
T TIGR00998 102 TVQQLQAKVESLKIKLEQAREKLLQ---AELDLRRRVPLFKKG-LISREELDHARKALLSAK 159 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHCC-CcCHHHHHHHHHHHHHHH
Confidence 3334444444444444444444332 344555555444433 323233333333444333
No 190
>PLN02939 transferase, transferring glycosyl groups
Probab=61.31 E-value=4.2e+02 Score=33.24 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHh
Q 007027 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 527 (621)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~ 527 (621)
|+-|+.|+...|+|. -.++.++.-++..+...++.++..+.+...+-.+
T Consensus 353 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 353 VELLQQKLKLLEERL----------QASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 355666666666653 2344566677778888888888777776555444
No 191
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=60.94 E-value=1.2e+02 Score=28.92 Aligned_cols=84 Identities=15% Similarity=0.317 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
++|.+-+.++=++|+...+.|..|+.. |..||+-|-.++++..+-......+...+......+...++.+
T Consensus 39 r~m~~A~~~v~kql~~vs~~l~~tKkh----------LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 39 RSMSDAVASVSKQLEQVSESLSSTKKH----------LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 367777888888888888888887765 4467777777777777777777777777777777777777766
Q ss_pred hcCCCCchhhhhhHHHHHHHH
Q 007027 417 KGNNDSNTKKVGILENQLRDL 437 (621)
Q Consensus 417 esrs~~deEK~~~LE~QLKEa 437 (621)
... +..||..|.+.
T Consensus 109 ~~~-------V~~Le~ki~~i 122 (126)
T PF07889_consen 109 QQM-------VEGLEGKIDEI 122 (126)
T ss_pred HHH-------HHHHHHHHHHH
Confidence 653 66667666543
No 192
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=60.05 E-value=91 Score=31.13 Aligned_cols=89 Identities=21% Similarity=0.334 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 007027 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (621)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (621)
+......++.++..|..++......+. .+...|+..+..-...++|.. ...++..|.+...+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~--------------~l~~~i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIE--------------ELEEKIEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666666666666666555544444 444445555555555566655 67788888888888888
Q ss_pred HhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 412 EINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 412 elk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
++..+... |-+++..+...+..++
T Consensus 125 el~~~~~~---Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 125 ELEKYSEN---DPEKIEKLKEEIKIAK 148 (188)
T ss_pred HHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 88855554 5577777776666554
No 193
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.83 E-value=1.3e+02 Score=26.90 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
...++.|.++++.-+.+|....+.++.++..++.+.+.+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999999999999998888776543
No 194
>PRK11281 hypothetical protein; Provisional
Probab=59.07 E-value=4.7e+02 Score=33.16 Aligned_cols=58 Identities=14% Similarity=0.073 Sum_probs=47.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccc
Q 007027 244 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (621)
Q Consensus 244 Lk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~ 301 (621)
|..+|...++...........+...+..+.+..|--+....+.+.|+|.+...|++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~ 183 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGK 183 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5555555566666677778888889999999999999999999999999999998844
No 195
>PF15456 Uds1: Up-regulated During Septation
Probab=58.62 E-value=1.5e+02 Score=28.22 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH------HhHhh------------------hhhhHHHHHhHHHHHHHHHhHHHh
Q 007027 332 KNSEVLTMKEKVKSLEEQLKESEIRLQ------NANAC------------------FQTSQEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 332 ~esEv~sLqkKvksLE~qLdes~eQL~------~A~ak------------------lEesE~EVaaLerrIelLKEel~r 387 (621)
+-+||..|.+.++.|...++-....+. +|-.+ ....+++++..+++|+++-.++.+
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356666676666666666665554432 11111 222377999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhh
Q 007027 388 AESRAESAEEKVTQLTDT 405 (621)
Q Consensus 388 AEsRa~tAesKle~LseT 405 (621)
+|.|+.....++-+=+-+
T Consensus 100 le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 100 LENRLAEVRQRLLEHTAA 117 (124)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888887554443
No 196
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=58.44 E-value=2.6e+02 Score=29.91 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=32.6
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhh
Q 007027 328 LESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (621)
Q Consensus 328 l~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAE 389 (621)
++.+...++..++..+..+..++......+...+..+....+.+.+++..+..+..+|..|+
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666655555555555555555555555445555555555555555555444
No 197
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=58.37 E-value=1.7e+02 Score=30.57 Aligned_cols=38 Identities=5% Similarity=-0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeecc
Q 007027 548 TQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (621)
Q Consensus 548 ~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~ 585 (621)
.+++.++.++...+.........++++...+|+.-++.
T Consensus 178 ~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~ 215 (331)
T PRK03598 178 QDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGTIL 215 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence 45667777888888888888888999988888887765
No 198
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=58.20 E-value=4.8e+02 Score=32.98 Aligned_cols=133 Identities=14% Similarity=0.199 Sum_probs=69.3
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC----C------hhHHHHHHHHHHHHHH
Q 007027 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLEE 348 (621)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s----~------esEv~sLqkKvksLE~ 348 (621)
.-.+.++..+.|.-+.-+-+.+..+=..+.+.+....+....-++.+-.|+.+ . ..+-....+|-..||-
T Consensus 228 YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel 307 (1200)
T KOG0964|consen 228 YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLEL 307 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34567888888888888877777776666666666665555444444433332 0 0111111222233333
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 007027 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (621)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (621)
+.+..+.|+.-- .+.-...-+.++.+++++...+..+...+-|...+.+...-+..-+..|++
T Consensus 308 ~~kdlq~~i~~n-------~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 308 KIKDLQDQITGN-------EQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred hhHHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 344333333221 111122334455556666666666666666666666666655555555555
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.08 E-value=1.2e+02 Score=26.10 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh-------------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS-------------------------AKEVNHRTKLMMEMVMQLATQRELI 553 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t-------------------------lKeae~Rak~aE~lV~KL~~ErdrL 553 (621)
.|..++..+...+..|+..+..+....++- .+.+..+.+.++.-+.+|...+..+
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655554433332 6666667777777777777777766
Q ss_pred HHHHHHHHHhhh
Q 007027 554 QKQVYSLTSENK 565 (621)
Q Consensus 554 e~ql~s~keenK 565 (621)
..++...+..++
T Consensus 89 ~~~l~~~~~~l~ 100 (106)
T PF01920_consen 89 EKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 200
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=57.53 E-value=1e+02 Score=31.45 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 007027 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (621)
Q Consensus 322 ~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~ 401 (621)
+.-|..+.-.+-+++..+-+-|-.||+.+|..++++.+--..+.+.++.-.++.+.+.-+|.+|-.-+.+++.-..=++-
T Consensus 60 ekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 60 GNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555556788999999999999999999999888666666554444455555555555555555555444444444
Q ss_pred HhhhhHHHHHH
Q 007027 402 LTDTNLELSEE 412 (621)
Q Consensus 402 LseTNdELere 412 (621)
--+|-|||.+-
T Consensus 140 ~~~~~~~~~~~ 150 (189)
T TIGR02132 140 QQKTQDELKET 150 (189)
T ss_pred CccchhHHHHH
Confidence 44555555543
No 201
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.42 E-value=1.8e+02 Score=30.20 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCC
Q 007027 516 SSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKS 577 (621)
Q Consensus 516 ~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~ 577 (621)
.-.+...+++++. +.+|..=...++..+.++..++++..+.+..+.++|.-|-+..+...+.
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555 6666777888999999999999999999988888998887777766544
No 202
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=57.28 E-value=44 Score=28.27 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+-++++|.-|.+++|.+|...+=+-+.+|..+....+.|.+++....
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788899999999999999999999999999999999888888765
No 203
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=56.57 E-value=2.3e+02 Score=28.64 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
+..++....-....|.+|...+.+|+.+|...+-+-..|.-...
T Consensus 101 ~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 101 AEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556677777777777777777776666665554444
No 204
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=56.20 E-value=2.5e+02 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHhh
Q 007027 427 VGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~ 445 (621)
+..||.++.+.+.+.+..+
T Consensus 122 ~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 122 LAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666655554444
No 205
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.70 E-value=75 Score=30.53 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHhhHHHHHhhhhHHHHHhhcC--------------ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHh
Q 007027 310 KLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNE 373 (621)
Q Consensus 310 KL~~~~eqL~~k~~~lekl~~s--------------~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaa 373 (621)
-...++++|...+....|.=+. +++|+..|...+..|.+++...........+.+-...+ ....
T Consensus 34 ~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 34 AVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3445566666655544443333 35566666666666666666666655555444433222 2224
Q ss_pred HHHHHHHHHhHHHhhhhhHH
Q 007027 374 MDNFIESLKESLYGAESRAE 393 (621)
Q Consensus 374 LerrIelLKEel~rAEsRa~ 393 (621)
|...|..|+.++..-++|+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555444444443
No 206
>PRK00295 hypothetical protein; Provisional
Probab=54.42 E-value=57 Score=27.75 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=41.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+-+++.|.-|-+++|..|...+=+.+.+|..+....+.|.+.+....
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999888888888888754
No 207
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.37 E-value=4.2e+02 Score=31.15 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HH--------------HHHhHHHHHHHHHhHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QE--------------QLNEMDNFIESLKESLY 386 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~--------------EVaaLerrIelLKEel~ 386 (621)
-+-+.+||.+..+||++++..-.+...-.-.+-.. ++ .-++..| .+.
T Consensus 89 lk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~---~~~---- 161 (596)
T KOG4360|consen 89 LKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQR---ELL---- 161 (596)
T ss_pred HhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHH---HHH----
Confidence 45567899999999999887666544333222110 00 1122222 111
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhh----hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHH
Q 007027 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK----VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (621)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK----~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei 462 (621)
+.-..|++.+.+-|..+.-+...|+--...-++| ++.+.++|+.++.|..--.--..--..+-+-.|++.
T Consensus 162 ------EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~ 235 (596)
T KOG4360|consen 162 ------EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN 235 (596)
T ss_pred ------HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223455555555555555555555443322332 456788888887544322100011112233367888
Q ss_pred HhHHHHHHHHhhhh
Q 007027 463 WDMETLIEDLKSKV 476 (621)
Q Consensus 463 ~dme~vIEdLk~Kl 476 (621)
+.+++.|-|++-|.
T Consensus 236 skLlsql~d~qkk~ 249 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKI 249 (596)
T ss_pred HHHHHHHHhhHHHH
Confidence 88888888877764
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.77 E-value=2.4e+02 Score=32.43 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=12.7
Q ss_pred hHHhHHHHHHHHHhhhhcccc
Q 007027 108 ELREVERLLDTIHVEIVNVHH 128 (621)
Q Consensus 108 Ev~ele~~~~~lq~~i~~~~~ 128 (621)
.+.+|=+|++.-...|.+.+-
T Consensus 87 t~~Dll~F~~~~~~~I~~iri 107 (493)
T KOG0804|consen 87 TSHDLLRFCASFIKQISDIRI 107 (493)
T ss_pred cHHHHHHHHHHHhhhhheeEE
Confidence 345556667666666666554
No 209
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.19 E-value=1.8e+02 Score=34.63 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh---HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes---E~EVaaLerrIelLKEel~rAEsRa~tAesKle~Ls 403 (621)
.|++.|..++..+...+..+..+|..+....... .-++..++++|..|+-++.+..++.+.-..++..+-
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777776666555432 448888999999998888888887777666666553
No 210
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.34 E-value=2.9e+02 Score=28.68 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC----CCCchhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSNTKKVG 428 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr----s~~deEK~~ 428 (621)
=+.|..|.+.|..++..+..+..++..|-.....+...=..+.|+++.|=.| +..|-+|--
T Consensus 31 Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT 95 (207)
T PF05546_consen 31 YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFT 95 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 4578888888888888888888888888888888888888889999988888 444544443
No 211
>PRK00736 hypothetical protein; Provisional
Probab=52.10 E-value=65 Score=27.40 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=42.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+-+++.|.-|-+++|..|...+=+-+.+|..++..-+.|.+++....
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999999999999999998754
No 212
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=51.41 E-value=39 Score=36.27 Aligned_cols=76 Identities=13% Similarity=0.336 Sum_probs=63.1
Q ss_pred HHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 007027 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (621)
Q Consensus 96 ~efDlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~ 175 (621)
-.+++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ +. .+.+.-.++.+.++.++.+|.-...++
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~~----------~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-GD----------EYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-ch----------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999876432 11 234444779999999999999999999
Q ss_pred hhhhhcc
Q 007027 176 RVLSYFI 182 (621)
Q Consensus 176 r~~~~~~ 182 (621)
|++.++.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998865
No 213
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=51.31 E-value=1.7e+02 Score=26.50 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 007027 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (621)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme------~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~EL 500 (621)
...|+.+++|.+.=+..=....+++. -|--|-++. .++.+|+.... ..+..+. .|
T Consensus 26 ~~~le~~~~E~~~v~~eL~~l~~d~~-----vyk~VG~vlv~~~~~e~~~~l~~r~e-------~ie~~i~-------~l 86 (110)
T TIGR02338 26 KQQVEAQLKEAEKALEELERLPDDTP-----VYKSVGNLLVKTDKEEAIQELKEKKE-------TLELRVK-------TL 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcch-----hHHHhchhhheecHHHHHHHHHHHHH-------HHHHHHH-------HH
Confidence 44555555555433333223333332 255554443 44444444444 4444555 56
Q ss_pred HHHHHHHHhhHHHHHHHHHHH
Q 007027 501 KNKQSFMRDKIKILESSLNRA 521 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA 521 (621)
++.+..++.+++.++.++.++
T Consensus 87 ek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 87 QRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777666666554
No 214
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.01 E-value=1e+02 Score=25.17 Aligned_cols=48 Identities=23% Similarity=0.293 Sum_probs=38.5
Q ss_pred HHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007027 517 SLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (621)
Q Consensus 517 sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (621)
+....-+++..|+.+++.+....+.-...|..+++.|..++..+..+|
T Consensus 16 AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 16 AARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667888889999998888888888888888888888888777665
No 215
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=51.00 E-value=6.3e+02 Score=32.12 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (621)
.+....+.+.++..+--|..|...|.+||.+++.
T Consensus 525 ye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 525 YELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777777777777777766
No 216
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=50.94 E-value=3.9e+02 Score=29.67 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHH
Q 007027 500 LKNKQSFMRDKIKILESSLNRANIE 524 (621)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~ 524 (621)
..++|...+.++..+++.+.++...
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 217
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=50.50 E-value=3.1e+02 Score=28.47 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=40.3
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 007027 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (621)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (621)
-...|..+.+- +.+..|.+.+..+|..|+.+...+..|+.....+.+.-+
T Consensus 21 as~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 21 ASQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677774 889999999999999999999999999988877644333
No 218
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=50.43 E-value=2.9e+02 Score=30.51 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhHHH-----HHhHHHHHHHH------HhHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 007027 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQ-----LNEMDNFIESL------KESLYGAESRAESAEEKVTQLTDTNLEL 409 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~A~aklEesE~E-----VaaLerrIelL------KEel~rAEsRa~tAesKle~LseTNdEL 409 (621)
-++...+.+++.+..++..+++.++..++. ..+++|+-.+. .++++.|..-...|..-+.... ...
T Consensus 98 a~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~~~ 174 (352)
T COG1566 98 AALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---AAQ 174 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---HHH
Confidence 334444444444444444444444433332 33667777776 5666666666666666665544 333
Q ss_pred HHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 007027 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (621)
Q Consensus 410 erelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (621)
+..+..|.+.-......+..++.+++.++..|+
T Consensus 175 ~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~ 207 (352)
T COG1566 175 KQNLALLESEVSGAQAQVASAEAALDQAKLDLE 207 (352)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHHHHHHhh
Confidence 344555555433334444555555555544444
No 219
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=50.33 E-value=4.9e+02 Score=31.82 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (621)
+++.|+..|+.|++..-+...++ +++.+.|++||.++.+|-..-+. .
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~s-----------s~LK~k~E~Lk~Evaka~~~pd~----------------------~ 692 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRS-----------SDLKSKIELLKLEVAKASKTPDV----------------------T 692 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHhcCCCCCc----------------------c
Confidence 34789999998888765544432 47888999999888544322111 1
Q ss_pred cCCCCchhhhhhHHHHHHH
Q 007027 418 GNNDSNTKKVGILENQLRD 436 (621)
Q Consensus 418 srs~~deEK~~~LE~QLKE 436 (621)
.-+|++.||.|+|.
T Consensus 693 -----~k~kieal~~qik~ 706 (762)
T PLN03229 693 -----EKEKIEALEQQIKQ 706 (762)
T ss_pred -----hHHHHHHHHHHHHH
Confidence 13689999999996
No 220
>PRK00846 hypothetical protein; Provisional
Probab=50.05 E-value=81 Score=27.91 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=44.1
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
..+-++++|.-|-+++|..|...+=+.+.+|..++...+.|.++++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477889999999999999999999999999999999999999999876
No 221
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=50.00 E-value=2.5e+02 Score=27.19 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=63.6
Q ss_pred HHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHhhhhhhHHHHH
Q 007027 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR--------------LQNANACFQTSQEQLN 372 (621)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ--------------L~~A~aklEesE~EVa 372 (621)
++..+.....||..++..-+-||- -++-.|+-...++-..+++=+.. |.+.+.++-....+..
T Consensus 18 lk~~l~k~~~ql~~ke~lge~L~~---iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~ 94 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEELGEGLHL---IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELE 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554444443 23333333333333333333222 3444555555566777
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhc
Q 007027 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (621)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Les 418 (621)
.+...|...++.+.+....+..+...+..+...+..+......+..
T Consensus 95 ~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~ 140 (177)
T PF13870_consen 95 RLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGV 140 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7777777777777777777777777777777777777666665544
No 222
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.84 E-value=4.9e+02 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=18.4
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 467 TLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
.=|++|-.++..|++++-.....|-
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~ 444 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECR 444 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666778888888777777777
No 223
>PRK04325 hypothetical protein; Provisional
Probab=49.72 E-value=72 Score=27.56 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=42.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.++++...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77889999999999999999999999999999999999999888754
No 224
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.50 E-value=4.7e+02 Score=30.21 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=77.3
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
..++.=|+|++++|+.+---|..|....-+....|... +..||.|+|+.+....+ ++
T Consensus 221 ~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR---------------------~h~LEEq~reqElraeE--~l 277 (502)
T KOG0982|consen 221 ERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHR---------------------YHMLEEQRREQELRAEE--SL 277 (502)
T ss_pred HHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHH---------------------HHHHHHHHHhhhhhHHH--HH
Confidence 33555666777777777777777766666666666544 55555666655422221 23
Q ss_pred hHhHHHHHhhhHHHHHhHH-HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 007027 448 SEASQEQQSMLYSAIWDME-TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (621)
Q Consensus 448 aEas~eqQ~mkysei~dme-~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~ 526 (621)
++..++ +...|-.+.|-- ..+| ..+.++-.|.+.|-+|-..+.-+++.+.-|..-.++.++.=+
T Consensus 278 ~Ee~rr-hrEil~k~eReasle~E--------------nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE 342 (502)
T KOG0982|consen 278 SEEERR-HREILIKKEREASLEKE--------------NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLE 342 (502)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 333333 222333332211 2222 223334444455555555555555555555444444433333
Q ss_pred hh-----------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 527 AS-----------------AKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (621)
Q Consensus 527 ~t-----------------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s 559 (621)
.+ +---..+.+....++-.|-++.++|+-....
T Consensus 343 ~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~ 392 (502)
T KOG0982|consen 343 ALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLV 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2223334566666777777777766655443
No 225
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.06 E-value=68 Score=27.81 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+..++.|..-+-++++-|+.+++.|..+-..+.++|..|..+..+.+
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56778888888899999999999999998888888888877766554
No 226
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=48.29 E-value=3.4e+02 Score=28.19 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 007027 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (621)
.-.+|+--+++.+.+|..|+..+...-..|.-++..+.+....++++..+..-|=
T Consensus 25 p~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 25 PEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888899999999998877766655566677788888888886666654443
No 227
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.81 E-value=3.9e+02 Score=28.79 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=56.9
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHH-----------------HHHHHHHHHHH
Q 007027 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM-----------------EMVMQLATQRE 551 (621)
Q Consensus 489 K~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE-----------------~lV~KL~~Erd 551 (621)
+|..++++-.+|...|..|..+.+..+..+.+.|+.=..|=+|++.-++-+. ..+..+..++.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7888888999999999999999999999999999988888555554444333 33445555555
Q ss_pred HHHHHHHHHHHhhhHH
Q 007027 552 LIQKQVYSLTSENKLL 567 (621)
Q Consensus 552 rLe~ql~s~keenK~L 567 (621)
.+..++-..+.+...|
T Consensus 283 ~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554444
No 228
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=47.74 E-value=6.6e+02 Score=31.42 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=34.9
Q ss_pred HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHH
Q 007027 463 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (621)
Q Consensus 463 ~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~k 520 (621)
..+.-.+|.++....++++.+|+-..+.- .|..||..+-.+++.|+..+.-
T Consensus 469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le-------~l~~El~~l~~e~~~lq~~~~~ 519 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRAETKTESQAKALE-------SLRQELALLLIELEELQRTLSN 519 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 33444566666666666766666666666 8888888888888888776443
No 229
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.69 E-value=1.2e+02 Score=34.68 Aligned_cols=72 Identities=29% Similarity=0.327 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhh
Q 007027 396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 475 (621)
Q Consensus 396 esKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~K 475 (621)
+...+.+-+--..++|+++.|+-+.+ .---...||++.+-++ |++.. +.+-+.-|+.-|++||.|
T Consensus 106 eqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~ka~----------Ed~eK----lrelv~pmekeI~elk~k 170 (542)
T KOG0993|consen 106 EQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDKAK----------EDEEK----LRELVTPMEKEINELKKK 170 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHH----------hhHHH----HHHHHhhHHHHHHHHHHH
Confidence 34444555555667787777765532 0013567888887665 45555 667788999999999999
Q ss_pred hhhhhhh
Q 007027 476 VSKAESK 482 (621)
Q Consensus 476 l~rAE~R 482 (621)
+.+||.|
T Consensus 171 l~~aE~~ 177 (542)
T KOG0993|consen 171 LAKAEQR 177 (542)
T ss_pred HHhHHHH
Confidence 9999986
No 230
>PTZ00464 SNF-7-like protein; Provisional
Probab=47.59 E-value=1.5e+02 Score=30.42 Aligned_cols=73 Identities=7% Similarity=0.150 Sum_probs=50.7
Q ss_pred hhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007027 477 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQ 556 (621)
Q Consensus 477 ~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~q 556 (621)
.+-+.|.+.++.|+- .++.|+..++..++..-. .+....-..|+-+-.|.+..|....++......|+.+
T Consensus 21 ~~l~~r~~~l~kKi~-------~ld~E~~~ak~~~k~~~~---~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~ 90 (211)
T PTZ00464 21 KRIGGRSEVVDARIN-------KIDAELMKLKEQIQRTRG---MTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQL 90 (211)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777776 788888888877764322 2233334457777788888888888888888888777
Q ss_pred HHH
Q 007027 557 VYS 559 (621)
Q Consensus 557 l~s 559 (621)
+++
T Consensus 91 ~~~ 93 (211)
T PTZ00464 91 QFT 93 (211)
T ss_pred HHH
Confidence 655
No 231
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.43 E-value=3.9e+02 Score=28.67 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=84.2
Q ss_pred Hhhhhhh-hhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcccc
Q 007027 222 KSLAREL-DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS 300 (621)
Q Consensus 222 kSla~el-dLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as 300 (621)
++||+|+ +...+|.|.=..|-+++.-....-+ |-++-.-.-..|+...+.+...++.++-.|+..
T Consensus 123 R~Laseit~~GA~LydlL~kE~~lr~~R~~a~~--------------r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l 188 (267)
T PF10234_consen 123 RQLASEITQRGASLYDLLGKEVELREERQRALA--------------RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNL 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhHHHHHHHHHc--------------CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578876 5778888877777666655432222 555555556678888899999999999999999
Q ss_pred ccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q 007027 301 LQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (621)
Q Consensus 301 ~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQ 356 (621)
...|..|-.|++.-.-.|+.-..-|+.|.+-++ .-.+-...+|.+|...-..
T Consensus 189 ~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 189 ASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888887777888877754 3334444455555544333
No 232
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.34 E-value=4.1e+02 Score=28.88 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 547 ATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 547 ~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+.+..+|+-++-....-|..+..++++++
T Consensus 341 ~~~~~~L~r~~~~~~~~y~~ll~r~~e~~ 369 (444)
T TIGR03017 341 RDEMSVLQRDVENAQRAYDAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888887765
No 233
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.10 E-value=3.6e+02 Score=28.17 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=66.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---------HHH-HHHHhHHHHhh---------------
Q 007027 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---------ESS-LNRANIEKAAS--------------- 528 (621)
Q Consensus 474 ~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL---------E~s-l~kA~q~k~~t--------------- 528 (621)
.-...-..|+++.|.||. .|.-||..|+..++-. -.. +.-..++| .|
T Consensus 19 dai~~v~~r~dSve~KIs-------kLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK-~yE~q~d~L~~QsfNMe 90 (218)
T KOG1655|consen 19 DAIDSVNKRSDSVEKKIS-------KLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKK-MYENQKDSLDQQSFNME 90 (218)
T ss_pred HHHHHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHhcccHH
Confidence 344566778889999999 8888888887766532 111 11112222 22
Q ss_pred --------HHHHHHhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 --------AKEVNHRTKLMMEMVMQLATQ--------RELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 --------lKeae~Rak~aE~lV~KL~~E--------rdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+|+.-+-...+.+.+.++..+ +++|+|++.-+.+....|.+-|-.+-
T Consensus 91 Qa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 91 QANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788877777888888888764 78999999999998888888776653
No 234
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.97 E-value=2.4e+02 Score=26.22 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 568 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (621)
..+++..|.++++.-+..|.+..++|+.++.......+.+.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999998888888888888888877766666543
No 235
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.62 E-value=85 Score=28.53 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=38.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
+.++.-.+++++-+..|...++.|+..+..+.+....+...+++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777788999999999999999999999999999999888875
No 236
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=46.58 E-value=1.1e+02 Score=29.14 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHH------hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHH
Q 007027 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW------DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (621)
Q Consensus 428 ~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~------dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELe 501 (621)
..+|.+|+|.+.-|..---+.+++.- |-.|- ++..++.+|..+.+.-|-|....+.+-- .+.
T Consensus 30 ~~le~qL~E~~~al~Ele~l~eD~~v-----Yk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~-------~l~ 97 (119)
T COG1382 30 QQLEAQLKEIEKALEELEKLDEDAPV-----YKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE-------KLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHH-----HHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 45566666666555555556666543 55443 3446777777777766666666666665 444
Q ss_pred HHHHHHHhhH
Q 007027 502 NKQSFMRDKI 511 (621)
Q Consensus 502 EEL~~l~~~l 511 (621)
+++.-+.+.+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 237
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.76 E-value=33 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHH
Q 007027 373 EMDNFIESLKESLYGAESRAESAEEKVTQ 401 (621)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~ 401 (621)
+++-|+..||..+..||.|++.|+.+...
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777777666544
No 238
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.65 E-value=1.1e+02 Score=26.39 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=41.4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.++++...
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999999999988888764
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.48 E-value=1.4e+02 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAES 394 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~t 394 (621)
|..+..|++.-..|-.+--.....+....++..+.+..+..+..++..+..++...+.|+..
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444444333333333334444444445556666666666666666666665543
No 240
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.43 E-value=1.1e+02 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=21.6
Q ss_pred hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 365 QTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 365 EesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
....++|.+|..-++..+++..||-.|+.+--
T Consensus 20 dqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 20 DQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33345555666667777888888888887643
No 241
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=45.31 E-value=8.1e+02 Score=31.80 Aligned_cols=35 Identities=3% Similarity=-0.034 Sum_probs=17.6
Q ss_pred hhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 007027 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (621)
Q Consensus 489 K~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (621)
+|.+++..=..-+.+++.+.+++..+-...-....
T Consensus 532 ~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~ 566 (1294)
T KOG0962|consen 532 KLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPL 566 (1294)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCc
Confidence 44444444445555555666665555444444333
No 242
>PRK02119 hypothetical protein; Provisional
Probab=44.27 E-value=99 Score=26.71 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=40.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
-+-+++.|.-|-+++|..|...+=+-+.+|..++...+.|.+.++...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778888899999999999999999999999999999988887754
No 243
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=44.07 E-value=41 Score=36.71 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=9.3
Q ss_pred HHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHH
Q 007027 264 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343 (621)
Q Consensus 264 ~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKv 343 (621)
.+++|+..=|.+..-|.+....+.+++..++.+|++...-=++++.-|.... ..+..|+..+
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLs------------------stV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLS------------------STVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHH
Confidence 3555555555555555555555555555555555444333333333332222 2333444444
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHH
Q 007027 344 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 344 ksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (621)
..++..+......+......+...+..|++|...|-.||.+|.
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 4444444443333333333333334444455555555555443
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=43.98 E-value=3.5e+02 Score=27.24 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 007027 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (621)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~ 547 (621)
-+..++.++...+.|.......+- .+.+++...+.++..+..++......=..+..-...+.+...+....+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~-------~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIE-------RLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666555555555 5555565666666555555544443333222222333444444444443
Q ss_pred HHHHH
Q 007027 548 TQREL 552 (621)
Q Consensus 548 ~Erdr 552 (621)
....+
T Consensus 130 ~~~~~ 134 (302)
T PF10186_consen 130 ERKQR 134 (302)
T ss_pred HHHHH
Confidence 33333
No 245
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.16 E-value=4e+02 Score=27.59 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=59.6
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH---HHHH------HHHhHHHHhhH
Q 007027 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL---ESSL------NRANIEKAASA 529 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL---E~sl------~kA~q~k~~tl 529 (621)
.+....+..=+|-....+.+.-.-++..-.|+. .|+.|+.-++..+... .... +.|........
T Consensus 58 ~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~-------~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~ 130 (202)
T PF06818_consen 58 QDSLRTKQLELEVCENELQRKKNEAELLREKLG-------QLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGE 130 (202)
T ss_pred HHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh-------hhHHHHHHHHHHHHhhccchhhhccccccchhHHhhcccc
Confidence 333333444444444666666666677777788 6666666666655544 0111 11111111112
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007027 530 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (621)
Q Consensus 530 Keae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (621)
..+..-..-++++-..|..+|.+.+.+..+.-.+-+.-.+
T Consensus 131 ~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQE 170 (202)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445556678888889999999998888876665554433
No 246
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.88 E-value=2.6e+02 Score=30.08 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (621)
.+.+.+..||.+..+...++.......+.. -.+.+.+......+.++..-...+...+..++..|.+||.
T Consensus 61 ~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 61 ELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 333444444444444444444433333222 3356677777777777777888888888888888877774
No 247
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=42.72 E-value=35 Score=37.26 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=30.6
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (621)
.+|..+|..+++.++..|.|+.........+.+-...+...+..|++++
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567777777777777777777766666666665555656666666654
No 248
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=42.43 E-value=3.2e+02 Score=26.22 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHhhc
Q 007027 506 FMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS---------LTSENKLLVEKLQYS 574 (621)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s---------~keenK~L~ekld~t 574 (621)
.+.+.+++||+..+...+.++..-+.-..+++.++..+.++..-...++..+.- .+.+|+.|..+++..
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~ 101 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDL 101 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 577889999999999999998888888888888888888876665555555433 346677777666654
No 249
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.37 E-value=3.6e+02 Score=26.80 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
|+.-+++.+.++..+...+...-+....+++.+..++..+.+=+.|+..|.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333444555555555555555555555543
No 250
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.17 E-value=8.4e+02 Score=31.08 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.+-...++.-=..+..||+..+.-+++.|+.....+..++
T Consensus 490 iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~ 529 (1195)
T KOG4643|consen 490 IKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLS 529 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445566666666666666666554444443
No 251
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=41.87 E-value=3.2e+02 Score=29.40 Aligned_cols=50 Identities=18% Similarity=0.322 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK 382 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLK 382 (621)
+.+...+.+.++.++.+-++....|.......+....++.+++.....++
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665555555555544444445555555444443
No 252
>PRK10869 recombination and repair protein; Provisional
Probab=41.85 E-value=6.1e+02 Score=29.34 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHhHHHHhh
Q 007027 510 KIKILESSLNRANIEKAAS 528 (621)
Q Consensus 510 ~lksLE~sl~kA~q~k~~t 528 (621)
+|..+|.-+...+.-+-+|
T Consensus 297 ~l~~ie~Rl~~l~~L~rKy 315 (553)
T PRK10869 297 RLAELEQRLSKQISLARKH 315 (553)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666
No 253
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=41.80 E-value=6.2e+02 Score=29.39 Aligned_cols=135 Identities=24% Similarity=0.283 Sum_probs=62.9
Q ss_pred hHHhhhccccccchhHHHHHHhhHHHH---HhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-
Q 007027 291 QIVQFNLNGSLQRESELKSKLGDFIEQ---LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (621)
Q Consensus 291 q~~qf~L~as~~REsel~sKL~~~~eq---L~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (621)
+-.+.-|-|++.||-+|..= |.+| ..+.+..+++.... .|..++-... -|+.+...+ .|.+..-.-++
T Consensus 101 KavekVlagaIrREmeLEe~---C~eQAakIeQLNrLVqQyK~E--rE~naiI~Q~--re~k~~rle-slmdg~l~~~e~ 172 (488)
T PF06548_consen 101 KAVEKVLAGAIRREMELEEV---CAEQAAKIEQLNRLVQQYKHE--RECNAIIAQT--REDKILRLE-SLMDGVLPTEEF 172 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccc--chhhHHHHHh--hhhHHHHHH-HhhccccchHHH
Confidence 55677788999999988743 3333 22334445555443 3333321110 011111111 11122212222
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (621)
..++..+|.+...+|+++.. .-......+|+ +-..-+|+.. .++-.+.-.||=.+|+ -+...+.|||
T Consensus 173 ~~ee~~sl~~e~KlLk~~~e---n~pevl~~~~E-~k~~qeel~~----~~~~~~d~~EkE~Ll~-EIq~Lk~qL~ 239 (488)
T PF06548_consen 173 IDEEYVSLMHEHKLLKEKYE---NHPEVLKEKIE-LKRVQEELEE----YRNFSFDMGEKEVLLE-EIQDLKSQLQ 239 (488)
T ss_pred hhhHhhhhhhHhhhhhhhcc---CchHHHhhHhH-HHHHHHHHHh----ccccccCcchHHHHHH-HHHHHHHHHH
Confidence 26677888888888888644 22333333332 2222333332 2333333345633333 3666667777
No 254
>PRK04406 hypothetical protein; Provisional
Probab=41.79 E-value=1.7e+02 Score=25.45 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=41.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+.++...
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466788888999999999999999999999999999999988887654
No 255
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=41.47 E-value=1.9e+02 Score=23.46 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh----hHHHHHH
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSEE 412 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT----NdELere 412 (621)
......+..+..++......|..... ......+..+-+..+.++.++..-+.++......+..+..+ +..+...
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 45566677777777777777633222 22345566666677777778777777777777777777544 3444444
Q ss_pred hhhhhc
Q 007027 413 INFLKG 418 (621)
Q Consensus 413 lk~Les 418 (621)
+..|..
T Consensus 82 ~~~l~~ 87 (105)
T PF00435_consen 82 LEELNQ 87 (105)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 256
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=41.13 E-value=4e+02 Score=27.05 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=87.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch-hHHHHHHhhHHHHHhh
Q 007027 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (621)
Q Consensus 242 eeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE-sel~sKL~~~~eqL~~ 320 (621)
.+|..+|..+....-........+..++.+..+..+-+....-+...+++.+...|++....- +.|..=....+
T Consensus 81 ~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l----- 155 (240)
T PF12795_consen 81 EELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLL----- 155 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHH-----
Confidence 444555555555555666777778888888999999999999999999999999999842222 22221111111
Q ss_pred hhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 007027 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (621)
Q Consensus 321 k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (621)
..|...|.-++.-++..+....-...-+....+.....+..++..++.|.+-+. .-|...|+...+
T Consensus 156 ------------~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln--~~R~~eae~~~~ 221 (240)
T PF12795_consen 156 ------------QAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN--QKRRQEAEQAVE 221 (240)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 244445555666666555554444444444444445555556666666655553 235555555555
Q ss_pred HHhhhhH
Q 007027 401 QLTDTNL 407 (621)
Q Consensus 401 ~LseTNd 407 (621)
.+.....
T Consensus 222 ~a~~~~~ 228 (240)
T PF12795_consen 222 EAEQLQE 228 (240)
T ss_pred HHHHHHH
Confidence 5444433
No 257
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.46 E-value=66 Score=28.12 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhh---hhHHhHHHHHHHHHhhhhcccceeccccc
Q 007027 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKH 135 (621)
Q Consensus 95 a~efDlL~gild---sEv~ele~~~~~lq~~i~~~~~~~~s~~~ 135 (621)
+.-||+++.|-+ ...+.++.-++.|..-|..|+.-|.+-..
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg 49 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG 49 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788887765 36788888888888888888776655444
No 258
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=40.21 E-value=6.5e+02 Score=29.21 Aligned_cols=115 Identities=23% Similarity=0.269 Sum_probs=80.3
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh-----hhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh----
Q 007027 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI-----VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---- 528 (621)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~-----~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---- 528 (621)
+...=.++-.-|+|.|--.+||=-| +++++.+ =||--..|=+.|-+|++..=++|..+|--.-+.--..
T Consensus 356 Ll~~Hr~i~egI~dVKkaAakAg~k--G~~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEll 433 (488)
T PF06548_consen 356 LLARHRRIMEGIEDVKKAAAKAGVK--GAESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELL 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455556677777766666443 5566655 1222233445555556667788888886554444333
Q ss_pred --HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 529 --AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 529 --lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
+++++.-+.++++--+..+.+-+++..||-.+|.+++.=..++++-
T Consensus 434 vrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 434 VRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999877776653
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.13 E-value=87 Score=33.60 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=18.4
Q ss_pred hhhhhhHhhHHHHHHHHHHHHHhhHhhhh
Q 007027 148 KKLHDCEGSLKESQEHVSELKMQSAKFQR 176 (621)
Q Consensus 148 ~kL~~~~~sLkq~~e~~~ei~~qsa~f~r 176 (621)
.||.++...+..|+.++...+-+...-++
T Consensus 8 ~KL~et~~~V~~m~~~L~~~~~~L~~k~~ 36 (344)
T PF12777_consen 8 DKLKETEEQVEEMQEELEEKQPELEEKQK 36 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666666666555443
No 260
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.78 E-value=7e+02 Score=29.47 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhcc
Q 007027 260 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298 (621)
Q Consensus 260 E~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~ 298 (621)
+.....|.+|-.+.+..+-++.-..++..|++-++|.++
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~ 195 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLE 195 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999999999999999999999998888764
No 261
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.95 E-value=8.7e+02 Score=30.30 Aligned_cols=21 Identities=38% Similarity=0.366 Sum_probs=10.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 007027 425 KKVGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~ 445 (621)
+.+..|..++..++..+..+.
T Consensus 777 ~~~~~l~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 777 ETLTQLEQLKQNLENQRQQAQ 797 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444333
No 262
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.75 E-value=3.3e+02 Score=25.37 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH------HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhH
Q 007027 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 500 (621)
Q Consensus 427 ~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme------~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~EL 500 (621)
...|+.+++|++.=+..=....+++.- |--|-+++ .++.+|..+++ ..+.++. .|
T Consensus 30 ~~~le~q~~e~~~~~~EL~~L~~d~~V-----Yk~VG~vlv~qd~~e~~~~l~~r~E-------~ie~~ik-------~l 90 (121)
T PRK09343 30 KSQIDLELREINKALEELEKLPDDTPI-----YKIVGNLLVKVDKTKVEKELKERKE-------LLELRSR-------TL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcchh-----HHHhhHHHhhccHHHHHHHHHHHHH-------HHHHHHH-------HH
Confidence 345556666655333333344444444 76666655 44444444444 4444455 55
Q ss_pred HHHHHHHHhhHHHHHHHHHHHh
Q 007027 501 KNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 501 eEEL~~l~~~lksLE~sl~kA~ 522 (621)
+.....++.+++.++.++.++-
T Consensus 91 ekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 91 EKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666655543
No 263
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.45 E-value=5.8e+02 Score=28.09 Aligned_cols=199 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-hHHHHHHHHHhHHH
Q 007027 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-EMDNFIESLKESLY 386 (621)
Q Consensus 308 ~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa-aLerrIelLKEel~ 386 (621)
+..|...+..|.+....| ..|+-...-+.+.|..+++.....-....++.|.-|+-|+ .|-++|+.|+-+-.
T Consensus 22 ~~~l~~~~~sL~qen~~L-------k~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 22 REQLRKRIESLQQENRVL-------KRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred hHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHH
Q 007027 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (621)
Q Consensus 387 rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme 466 (621)
.---....=+.-++ ..|.+.+.-|+. +|+ .||++|..-. +
T Consensus 95 ~L~~~~e~EEE~lt------n~L~rkl~qLr~------EK~-~lE~~Le~Eq---------------------------E 134 (310)
T PF09755_consen 95 TLALKYEQEEEFLT------NDLSRKLNQLRQ------EKV-ELENQLEQEQ---------------------------E 134 (310)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH------HHH-HHHHHHHHhH---------------------------H
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHH
Q 007027 467 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 546 (621)
Q Consensus 467 ~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL 546 (621)
.+|.-|..++.+.+.. +. .+..+|.-++.---.||+.|++..+
T Consensus 135 ~~V~kL~k~i~~Le~e-------~~-------~~q~~le~Lr~EKVdlEn~LE~EQE----------------------- 177 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKE-------KS-------AKQEELERLRREKVDLENTLEQEQE----------------------- 177 (310)
T ss_pred HHHHHHHHHHHHHHHH-------HH-------HhHHHHHHHHHHHHhHHHHHHHHHH-----------------------
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceee-----eccCCCCCc
Q 007027 547 ATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATM-----YNAGDTDDK 591 (621)
Q Consensus 547 ~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~-----~~~~~~~~~ 591 (621)
.=|.||..|+.-+..+++.|-.+|++...+||-.. ...+||-++
T Consensus 178 -~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~ 226 (310)
T PF09755_consen 178 -ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAER 226 (310)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhH
No 264
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=38.44 E-value=4.6e+02 Score=27.00 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=19.2
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhh----HHHHHHHHHHHhHHHHhh
Q 007027 485 SVEEQCIVLSEDNFELKNKQSFMRDK----IKILESSLNRANIEKAAS 528 (621)
Q Consensus 485 ~aEsK~~~Lse~N~ELeEEL~~l~~~----lksLE~sl~kA~q~k~~t 528 (621)
.|+.|+- .-|+|+..++++ +..|.+++.++.-+-.+.
T Consensus 140 hAeekL~-------~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SL 180 (207)
T PF05010_consen 140 HAEEKLE-------KANEEIAQVRSKHQAELLALQASLKKEEMKVQSL 180 (207)
T ss_pred HHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 445555555544 445666665554444443
No 265
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=38.36 E-value=7.8e+02 Score=29.58 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=50.2
Q ss_pred hhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 479 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (621)
Q Consensus 479 AE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~ 558 (621)
.+......+..|...- +++..+.+.+..|...+..++......-++...-...+..++..|+.....|.+..
T Consensus 225 ~~~~~~~l~~~~~~~~-------~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~- 296 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIK-------KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK- 296 (670)
T ss_pred HHHhhhhhhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333445555555333 33444444444444444444444444433333334444444788888888888888
Q ss_pred HHHHhhhHHHHHHhhcC
Q 007027 559 SLTSENKLLVEKLQYSG 575 (621)
Q Consensus 559 s~keenK~L~ekld~t~ 575 (621)
.+...++.|..++.+.|
T Consensus 297 ~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888888877766653
No 266
>PRK11020 hypothetical protein; Provisional
Probab=37.53 E-value=1.6e+02 Score=28.06 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcCCCC
Q 007027 500 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE-NKLLVEKLQYSGKSS 578 (621)
Q Consensus 500 LeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~kee-nK~L~ekld~t~~~~ 578 (621)
+..||..+-++|..+.-++..|..+-+. ..+.|+..|++.|..+|.+++.. ...|+.+-+... +.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~-------------~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~-~l 68 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDA-------------EKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLM-KL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 5678888888888777666666665543 45778888888888888887754 334454444443 45
Q ss_pred cee
Q 007027 579 SAT 581 (621)
Q Consensus 579 ~~~ 581 (621)
||.
T Consensus 69 pF~ 71 (118)
T PRK11020 69 PFS 71 (118)
T ss_pred Ccc
Confidence 553
No 267
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=37.17 E-value=3.1e+02 Score=27.11 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHH
Q 007027 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESL 381 (621)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelL 381 (621)
.|+-|.-..+|.|+.--+.-+ ..+-|+..|......|+.+...=...-..+...+.. .+++..+|...|..|
T Consensus 26 ~LmP~VV~vLE~Le~~~~~n~----~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~L 101 (158)
T PF09744_consen 26 GLMPKVVRVLELLESLASRNQ----EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQL 101 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555543211111 023445556666666665554433222333333322 244555666666666
Q ss_pred HhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHh
Q 007027 382 KESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (621)
Q Consensus 382 KEel~rAEsRa~tAesKle~LseTNdELerel 413 (621)
++....-+.++.+......-+.+.-.++.++.
T Consensus 102 e~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~ 133 (158)
T PF09744_consen 102 EEENRQLELKLKNLSDQSSRLEEREAELKKEY 133 (158)
T ss_pred HHHHHHHHHHhhhhhhhccccchhHHHHHHHH
Confidence 66655555555444444333333333333333
No 268
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=36.96 E-value=6e+02 Score=27.83 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHh
Q 007027 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (621)
Q Consensus 394 tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk 473 (621)
.|..|+.++..-++-|+++.+- |-+ -+++||.-|.. .+.-++.-.- .|..++|=..-+-+.
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQ---rQf----QleSlEAaLqK-------QKqK~e~ek~----e~s~LkREnq~l~e~- 75 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQ---RQF----QLESLEAALQK-------QKQKVEEEKN----EYSALKRENQSLMES- 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHH----hHHHHHHHHHH-------HHHHHHHHhh----hhhhhhhhhhhHHHH-
Confidence 4667777777777777776551 111 23444443332 2233333332 355555544333322
Q ss_pred hhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 007027 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 474 ~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (621)
|--|-.++-.|.-+|.+-.+.+.+||.++..+.
T Consensus 76 ----------------c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~K 108 (307)
T PF10481_consen 76 ----------------CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCK 108 (307)
T ss_pred ----------------HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHH
Confidence 333333344677888888888888888887654
No 269
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.86 E-value=8.6e+02 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILES 516 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~ 516 (621)
.|..||+.++.++..++.
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~ 387 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEE 387 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887776
No 270
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.84 E-value=5.5e+02 Score=27.40 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHH
Q 007027 306 ELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIES 380 (621)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s-----~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIel 380 (621)
-+...+.....+|..-+..|...... .+........-+..|+.++...+.++..+....-...=.|..+..+|..
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 34455555555555555555544443 2344445556666666666666666655443322212234444444444
Q ss_pred HHhHHHh
Q 007027 381 LKESLYG 387 (621)
Q Consensus 381 LKEel~r 387 (621)
|+..+..
T Consensus 254 l~~~i~~ 260 (362)
T TIGR01010 254 LRKQIDE 260 (362)
T ss_pred HHHHHHH
Confidence 4444433
No 271
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=36.24 E-value=3.3e+02 Score=31.79 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=53.3
Q ss_pred ccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-------
Q 007027 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT------- 366 (621)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe------- 366 (621)
...-..||.-|++--..-+.+|-.+- +..++. =-.|...|++++...|.+.+....+|..++.+.-.
T Consensus 404 ~~E~esRE~LIk~~Y~~RI~eLt~ql---Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 404 SPEEESREQLIKSYYMSRIEELTSQL---QHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778777766666666655432 222221 14678888888887777777666666665554322
Q ss_pred ----hHHHHHhHHHHHHHHHhHHHhhhhh
Q 007027 367 ----SQEQLNEMDNFIESLKESLYGAESR 391 (621)
Q Consensus 367 ----sE~EVaaLerrIelLKEel~rAEsR 391 (621)
++.+++.|.--+-.|-+++.+-...
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~~Q~ee 509 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLAKQREE 509 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1555666655555555555544443
No 272
>PF15294 Leu_zip: Leucine zipper
Probab=36.24 E-value=5.9e+02 Score=27.57 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHh----------------hHHHHHHHHHHHhHHHHhh
Q 007027 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD----------------KIKILESSLNRANIEKAAS 528 (621)
Q Consensus 465 me~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~----------------~lksLE~sl~kA~q~k~~t 528 (621)
+-..|..|+.+..+..+|.-++|..|+...+.+.+|+..|+.++. .+..||.+...+...=..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 446788999999999999999999999999999999999988876 1334566665554444445
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVY 558 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~ 558 (621)
+.+-+...+..+..|.-=-+++-+.+.++.
T Consensus 210 ~~d~~~~~k~L~e~L~~~KhelL~~QeqL~ 239 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCKHELLRVQEQLS 239 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 666666666666666666666666666643
No 273
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.17 E-value=5.2e+02 Score=26.94 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
.+.|.+|++.|...+.+-.+.+..+......+.-|-...+++-++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999988888888888887777777666
No 274
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=36.11 E-value=8.1e+02 Score=29.13 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhh
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTN 406 (621)
......+.++-|.+.+...+.++..|+.++...-..|
T Consensus 261 k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 261 QAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446677788888888888888888888887776655
No 275
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.85 E-value=2.9e+02 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQN 359 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~ 359 (621)
.++.+|+.++.++..++..++.-+..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~ 30 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKR 30 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777776666666665554433
No 276
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=35.43 E-value=6.2e+02 Score=28.80 Aligned_cols=54 Identities=22% Similarity=0.330 Sum_probs=32.9
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 007027 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (621)
Q Consensus 449 Eas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE 515 (621)
+.++. +...|.|+..+||+|+.+|..---| -...+.- -+..+|..++..|+.++
T Consensus 213 ~~sd~----Ll~kVdDLQD~VE~LRkDV~~RgvR--p~~~qle-------~v~kdi~~a~~~L~~m~ 266 (424)
T PF03915_consen 213 EESDR----LLTKVDDLQDLVEDLRKDVVQRGVR--PSPKQLE-------TVAKDISRASKELKKMK 266 (424)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHcCCc--CCHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 46677 8889999999999999998765544 2233333 34444555544444443
No 277
>PRK15396 murein lipoprotein; Provisional
Probab=34.88 E-value=1.4e+02 Score=26.43 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 354 EIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 354 ~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
..+.+..+++.+...+.+.++..-++.-+++..||-.|+++--
T Consensus 31 ssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 31 SSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555666777777777888888888887644
No 278
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=34.86 E-value=5.9e+02 Score=27.47 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (621)
++...+-.+.+++..+...-.|+..++.+-..++++-.-+.....-+.+.+
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s 265 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS 265 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 333333334444444444444555555566666666555555555555544
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.83 E-value=2.6e+02 Score=23.74 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=22.9
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 007027 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (621)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (621)
+.+.+++.+..+--.+++.++..+..-|.+|..+++.|+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655666666666666666666666555443
No 280
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.83 E-value=2.7e+02 Score=33.16 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+..+..++++|+..|...+++...|..+|..++
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666554
No 281
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=34.72 E-value=6.7e+02 Score=27.77 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=36.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHH
Q 007027 353 SEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN 432 (621)
Q Consensus 353 s~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~ 432 (621)
|...+..|++.+.+++..+..+...+...+ .....+..+ .+..+..++.|-.. |-.++...-+.++..-.
T Consensus 89 y~~al~qAea~la~a~~~~~~~~a~~~~~~-------A~i~~a~a~--~l~~a~~~~~R~~~-L~~~g~vs~~~~~~a~~ 158 (352)
T COG1566 89 YRAALEQAEAALAAAEAQLRNLRAQLASAQ-------ALIAQAEAQ--DLDQAQNELERRAE-LAQRGVVSREELDRARA 158 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH--HHHHHHHHHHHHHH-HHhcCcccHHHHHHHHH
Confidence 444555555555554444444444444444 444444443 55566666666544 33333333344444444
Q ss_pred HHHHHH
Q 007027 433 QLRDLE 438 (621)
Q Consensus 433 QLKEa~ 438 (621)
.+..++
T Consensus 159 a~~~A~ 164 (352)
T COG1566 159 ALQAAE 164 (352)
T ss_pred HHHHHH
Confidence 444333
No 282
>PRK11519 tyrosine kinase; Provisional
Probab=34.64 E-value=6.6e+02 Score=29.80 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=26.6
Q ss_pred HHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccch
Q 007027 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 304 (621)
Q Consensus 267 er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~RE 304 (621)
.|.-.+.++.+.|..-...+..+|+..|..|.....+.
T Consensus 260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~ 297 (719)
T PRK11519 260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDK 297 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35556777888888888888888777777776554443
No 283
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=34.30 E-value=9.9e+02 Score=29.61 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=78.4
Q ss_pred HHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhh--------h--HHHHHhhcCChhHHHHHHHHHHH
Q 007027 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--------D--MVLQKLESTKNSEVLTMKEKVKS 345 (621)
Q Consensus 276 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--------~--~~lekl~~s~esEv~sLqkKvks 345 (621)
+-.|+|++|.|+.--.-.++. .|..-++.|+-.|-+- + .+++-| -+|...|+.+++.
T Consensus 339 ~KYLLgELkaLVaeq~DsE~q---------RLitEvE~cislLPav~g~tniq~EIALA~Qpl----rsENaqLrRrLri 405 (861)
T PF15254_consen 339 LKYLLGELKALVAEQEDSEVQ---------RLITEVEACISLLPAVSGSTNIQVEIALAMQPL----RSENAQLRRRLRI 405 (861)
T ss_pred HHHHHHHHHHHHhccchHHHH---------HHHHHHHHHHHhhhhhhccccchhhhHhhhhhh----hhhhHHHHHHHHH
Confidence 345677777766543333321 2455566666555431 1 122222 4678888889888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
|..+|++-+ .-..+... ..+-=|+.+|+..+-.|.-.|..+..-.+.-..|.++|.+.++-...+-+-|
T Consensus 406 lnqqlreqe-~~~k~~~~-~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 406 LNQQLREQE-KAEKTSGS-QDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRL 474 (861)
T ss_pred HHHHHHHHH-hhcccCCC-cccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888722 22211111 1134488899999999999988888888888888888888886665554433
No 284
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=33.68 E-value=6.4e+02 Score=27.20 Aligned_cols=62 Identities=26% Similarity=0.282 Sum_probs=38.8
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 007027 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (621)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (621)
+|.+|-.-|..|-.+..--..|.|..-.-++-+++.+..+.+++..+..++..|| +|+++-|
T Consensus 245 Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe-~LcRaLQ 306 (309)
T PF09728_consen 245 EMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLE-KLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 4555555555555555555566666666677777777777777777777777774 3444433
No 285
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.95 E-value=1e+02 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=27.6
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
||.+|+.++.+-++-..+.......++++.+.+++-.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777776654
No 286
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=32.27 E-value=7.4e+02 Score=27.98 Aligned_cols=52 Identities=35% Similarity=0.434 Sum_probs=29.6
Q ss_pred hhhhHHHHHHHHHHHHHH--------hhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhh
Q 007027 426 KVGILENQLRDLEIQLQQ--------AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqh--------A~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE 480 (621)
|...||.|+-+. +||++ .-+..|+...=|+ |+-++|+.-+||-.+++++|-|
T Consensus 259 R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 259 RYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 455666666655 34443 3345555444333 6667777777776666666555
No 287
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=32.13 E-value=4.2e+02 Score=29.91 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhH------------------HHHHhHHHHHHHHHhHHHhhhhhHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ------------------EQLNEMDNFIESLKESLYGAESRAES 394 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE------------------~EVaaLerrIelLKEel~rAEsRa~t 394 (621)
.+++..|++++..++.++...+.++..+.+.+.-.+ ..++.+.....-+.+.+...-.+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDRE 149 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777766555544432110 02334444444455555555555555
Q ss_pred HHHHHHHHhhhhHHHHHHhhhhhc
Q 007027 395 AEEKVTQLTDTNLELSEEINFLKG 418 (621)
Q Consensus 395 AesKle~LseTNdELerelk~Les 418 (621)
+..++..+.+.-..+.+++..|.+
T Consensus 150 ~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 150 AERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555555555555554443
No 288
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=31.96 E-value=71 Score=30.57 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=21.6
Q ss_pred hhHHhHHHHHHHHHhhhhcccceeccccc---hhhHHHH--HHHhHhhhhhhH--hhHHHH-----HHHHHHHHH---hh
Q 007027 107 SELREVERLLDTIHVEIVNVHHKISSCKH---LREVFTI--MEKMEKKLHDCE--GSLKES-----QEHVSELKM---QS 171 (621)
Q Consensus 107 sEv~ele~~~~~lq~~i~~~~~~~~s~~~---~~~~f~~--~~~~~~kL~~~~--~sLkq~-----~e~~~ei~~---qs 171 (621)
+||.+|=.-+..+..+|.-.-.++-|-.| .-++|.| |+.|-++++.|+ ..|.+. ..+|+.=.. -.
T Consensus 6 kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~d~~iip~~~~~~~~ 85 (121)
T PF03310_consen 6 KEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNKELLEALKKQPDKQIIPSPEEDSKG 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCcCCCCCCCCCC
Confidence 34444444444444444444333333333 2334444 555566666652 111111 222322222 24
Q ss_pred HhhhhhhhhcccCCCccc
Q 007027 172 AKFQRVLSYFIHGNNDEA 189 (621)
Q Consensus 172 a~f~r~~~~~~~~~~~~~ 189 (621)
.+|++ -+|.||++||.
T Consensus 86 ~~~~k--YSyPN~~VGne 101 (121)
T PF03310_consen 86 SSLQK--YSYPNWNVGNE 101 (121)
T ss_dssp ------------------
T ss_pred CCCcc--cCCCCCCCCch
Confidence 78888 34679999885
No 289
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.75 E-value=5.4e+02 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (621)
+.|+..-...+..+|+.|..=+.+|..-...+
T Consensus 70 E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L 101 (201)
T PF12072_consen 70 ERELKERRKELQRLEKRLQQREEQLDRRLEQL 101 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333
No 290
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.73 E-value=7.4e+02 Score=27.39 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----hHhhhhhhHHHHHhHHHHHHHHHhHHHhhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQN----ANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~----A~aklEesE~EVaaLerrIelLKEel~rAEs 390 (621)
+=+..+++++..+..++...-.+... +...++.+...+..|-.+|..++++-.++|.
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~ 85 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQ 85 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666665554432 2233444455666666666666666655555
No 291
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=31.64 E-value=2.3e+02 Score=23.97 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHh
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 383 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKE 383 (621)
.+++|+..+|..++................+..+..++..|..+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666554444333333333334444455555554444
No 292
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.56 E-value=3.9e+02 Score=27.44 Aligned_cols=121 Identities=21% Similarity=0.281 Sum_probs=61.2
Q ss_pred ccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC--------------ChhHHH
Q 007027 272 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVL 337 (621)
Q Consensus 272 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s--------------~esEv~ 337 (621)
++|+.+|++.-..+- .|==+. .+.-|..+||.==+.-....+++|...+....|.-+. +++|..
T Consensus 5 ~~~~e~ivl~~~~eq-NrP~ss-q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~ 82 (201)
T KOG4603|consen 5 AEDAEGIVLRYLQEQ-NRPYSS-QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQ 82 (201)
T ss_pred ccccHHHHHHHHHHh-cCCCch-HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHH
Confidence 456666666544331 111111 1223344444412334556778888887777776655 345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHH--HHHhHHHHHHHHHhHHHhhhhhHHH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQE--QLNEMDNFIESLKESLYGAESRAES 394 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~--EVaaLerrIelLKEel~rAEsRa~t 394 (621)
-|-.++.-|+.++....-......+.+-...+ .+-.|+..|+.|+..+..-++|+.+
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544433322222222211111 2335666777777777777666644
No 293
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=31.44 E-value=1.8e+02 Score=31.09 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 007027 350 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (621)
Q Consensus 350 Ldes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAes 397 (621)
+.....++++++..+....++-++|+..|+--+-+++|++-|+.+-.+
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555556777889999999999999999999988653
No 294
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=30.73 E-value=1.1e+03 Score=28.87 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tA 395 (621)
.+.-.+|+++.-||.+-+....|..-.....++.-++|.+|+-.|+.-..++--+|+-++.-
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqe 165 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQE 165 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 66778999999999999999999888888888888899999999999999988888877754
No 295
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.69 E-value=3.8e+02 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=12.7
Q ss_pred HHHhhhhHHhhhccccccc
Q 007027 285 EMLGRFQIVQFNLNGSLQR 303 (621)
Q Consensus 285 el~gkLq~~qf~L~as~~R 303 (621)
..+.++|..|..|.....+
T Consensus 10 ~~l~q~QqLq~ql~~~~~q 28 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQ 28 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766554
No 296
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.20 E-value=5.1e+02 Score=31.36 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 371 VaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
-..+++.|+.|+.+....+.+...+.....++.+...+++++...|+.+ |-..++.-.++++.-+..|+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~~~~~a~~~l~~a~~ 584 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLEEAEKEAQQAIKEAKK 584 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888888888888888888888888888888764 445555555555544444443
No 297
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.02 E-value=2.4e+02 Score=27.06 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHhHHHHHHHHHhHHHhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF--QTSQEQLNEMDNFIESLKESLYGAE 389 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl--EesE~EVaaLerrIelLKEel~rAE 389 (621)
.++..|++.+..+..+.+.....|....... ++....|..+...|..++..+..-.
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655544443 3334455555555555555555444
No 298
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.18 E-value=3.9e+02 Score=26.14 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHH
Q 007027 340 KEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (621)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEe-sE~EVaaLerrIelLKEel~rAEsRa~tAesKle 400 (621)
-.++..+++.++....|...+....+. ..++....+..|+.|+.++.+++.-.+.-..+++
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433322222 2345556666677777777765554444444333
No 299
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=28.78 E-value=6.8e+02 Score=25.99 Aligned_cols=36 Identities=14% Similarity=-0.042 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeecc
Q 007027 550 RELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 585 (621)
Q Consensus 550 rdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~ 585 (621)
+...+.++...+.........++.+...+||+-++.
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V~ 216 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALLELTYVKAPIDGRVL 216 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence 444555666666666677777888888899887664
No 300
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.66 E-value=1.1e+03 Score=28.28 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 389 EsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
-++...-..|.--..+-+.++-.+++-+++. ++.|+..||.+.+.-.
T Consensus 430 ~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiaeler~~kdqn 476 (654)
T KOG4809|consen 430 ASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAELERHMKDQN 476 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhhcCchhhhhh
Confidence 3333333344444566677777788888875 5688899988877544
No 301
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=28.00 E-value=3.7e+02 Score=22.75 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH-----hhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNAN-----ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~-----aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (621)
.++.....++..|+..+..+...+.... ..+-....-+..+...|..++..+..++.....+...+..+
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a 85 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEA 85 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 302
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.89 E-value=3.9e+02 Score=22.97 Aligned_cols=19 Identities=26% Similarity=0.583 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007027 338 TMKEKVKSLEEQLKESEIR 356 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQ 356 (621)
.|.++...++.+++....+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~ 84 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQ 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 303
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=27.47 E-value=3.3e+02 Score=30.03 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa 372 (621)
.+.|.-||+|+..|+.+|.++..+|+.++..|.-+++.-+
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~ 213 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNA 213 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888887777666554444333
No 304
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.42 E-value=1.1e+02 Score=25.06 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=21.9
Q ss_pred hhhhhhhhccchhhHHHHHHHHHhhHHHHHHHH
Q 007027 486 VEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (621)
Q Consensus 486 aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl 518 (621)
.|.++..|+..|..|..++..+...+..|....
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333455566666677777778877777776554
No 305
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.78 E-value=7.8e+02 Score=26.01 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007027 342 KVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 342 KvksLE~qLdes~eQL~ 358 (621)
.+..++.++...+.++.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 306
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.35 E-value=2.6e+02 Score=27.25 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 007027 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (621)
Q Consensus 306 el~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLde 352 (621)
.+.+.++....||..++..|..|..+ ...+-.|+.++..|+.+.++
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~~-~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKKS-AKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888875 55666778887777777763
No 307
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.35 E-value=8.8e+02 Score=26.53 Aligned_cols=13 Identities=31% Similarity=0.483 Sum_probs=7.7
Q ss_pred HHHHhHHHHHHHH
Q 007027 369 EQLNEMDNFIESL 381 (621)
Q Consensus 369 ~EVaaLerrIelL 381 (621)
.-|..|.+++..|
T Consensus 246 ~~l~~L~~~lslL 258 (388)
T PF04912_consen 246 PALNELERQLSLL 258 (388)
T ss_pred HHHHHHHHHHHhc
Confidence 3455666666666
No 308
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.09 E-value=9.4e+02 Score=26.76 Aligned_cols=88 Identities=23% Similarity=0.195 Sum_probs=53.1
Q ss_pred HHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHH-------hhcC-----ChhHH
Q 007027 269 FLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQK-------LEST-----KNSEV 336 (621)
Q Consensus 269 ~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lek-------l~~s-----~esEv 336 (621)
-|=.+...+.|++..+.-++.++.++..+.+...+=...-.+++..+ .+.+-..... +..+ +.+=.
T Consensus 117 DFVd~~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 194 (412)
T PF04108_consen 117 DFVDEDSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQL--INKRLKDYELLAPFQSSLGSSPSSSSSNPLM 194 (412)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--hhhhhhhhhhccccccccCCCCCcccccccH
Confidence 45567778888888899999999999988888876666666665555 1211111221 1000 01334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~ 358 (621)
..+-+-+.+||.++...-+.|.
T Consensus 195 ~~i~~~l~~le~ema~lL~sLt 216 (412)
T PF04108_consen 195 STILKELHSLEQEMASLLESLT 216 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677766666555544
No 309
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.79 E-value=4e+02 Score=29.14 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=52.9
Q ss_pred hHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCCh
Q 007027 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN 333 (621)
Q Consensus 275 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~e 333 (621)
+--||+-.-+..+-++|.+-..||....-|..|-+|++.-.-.|+.-..-|++|++-+.
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP 164 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRP 164 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34578889999999999999999999999999999999988888888888899998854
No 310
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=25.78 E-value=4.9e+02 Score=23.31 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
.|+.=|.-+...+..||...+.-....... -+++.+..-+..--.+|+.+.|........+..-|+.++..|+.+
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778888888777766655544 455555555666666777777777777777777777777777643
No 311
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.78 E-value=2.3e+02 Score=25.70 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHH
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAES 394 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~t 394 (621)
..+.++..-++--+++-.||-+|+++
T Consensus 45 ~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 45 QDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334444444445555555555543
No 312
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.76 E-value=6e+02 Score=30.76 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=38.5
Q ss_pred HhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 372 aaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (621)
..+++.|+.|+++....+.+...+.....++.+...+++++.+.|+.+
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 558 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER 558 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888888888888888888888888888877764
No 313
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=25.60 E-value=1.1e+03 Score=27.25 Aligned_cols=145 Identities=19% Similarity=0.251 Sum_probs=98.8
Q ss_pred HHHHhh--hhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcC---ChhHHHHHHHHHHHHHHHH
Q 007027 276 AEVLMG--ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQL 350 (621)
Q Consensus 276 ~EvL~g--~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s---~esEv~sLqkKvksLE~qL 350 (621)
.-||.| ||--+++=|=++--+|.--...=++|+-.|...-++|..-.-.....+.. -.+|+..-...-+.++.++
T Consensus 46 vtvltG~liSA~tLailf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~ 125 (499)
T COG4372 46 VTVLTGMLISAATLAILFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQEL 125 (499)
T ss_pred hhhhhcchhhHHHHHHHHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 45556666655555554444444566666666666665544444333332 2466766666777788888
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCC
Q 007027 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (621)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs 420 (621)
+...-.+..|.-.+-....+-.++..++..|-+.--+++..+++-...-+.|-.++.+++...-.|.-++
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~ 195 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRS 195 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777666555566777888888888888888888888888888888888888888877777764
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.53 E-value=6.9e+02 Score=27.68 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 373 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 373 aLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
-+|+.++.+=.++..+..++..+..++..++++..+..++++.+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667777777788888899999999999999988888888744
No 315
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=25.51 E-value=1.6e+03 Score=29.21 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=81.9
Q ss_pred HHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH---HHh
Q 007027 459 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV---NHR 535 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKea---e~R 535 (621)
+....+...+++-++..+.+++..+-.+..+.- +..+++..+..++..+.....++..++.....++ ..+
T Consensus 919 ~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~-------~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 991 (1395)
T KOG3595|consen 919 IDKYSKVLKVVEPKRQELARLEAELKAAMKELE-------EKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELK 991 (1395)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788778888888887777777777 7777788888888888877777777777774444 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007027 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVE 569 (621)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~e 569 (621)
...+.++|..|..|++|.-..+......+..+..
T Consensus 992 ~~~a~~Li~~Ls~e~~rW~~~~~~~~~~~~~l~g 1025 (1395)
T KOG3595|consen 992 LLRAEELIQGLSGEKERWSETSEQFSKQYSRLVG 1025 (1395)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhhhhH
Confidence 8899999999999999999999988888877654
No 316
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.47 E-value=8.6e+02 Score=26.07 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC--CCCceeeeccCCCCCcceeec
Q 007027 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG--KSSSATMYNAGDTDDKELLIN 596 (621)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~--~~~~~~~~~~~~~~~~~~~~~ 596 (621)
.-.+..-..+.-.+++.|+.+|.-++.+.+.|...-.+-. +-+++-|...--|.|-|+..|
T Consensus 188 N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~iF~dvll~rpKCTPDmdV~Ln 250 (258)
T PF15397_consen 188 NQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVIFADVLLRRPKCTPDMDVILN 250 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhhHHHhcCCCCCCCCchhhcC
Confidence 4455555556667778888888888888888766666332 234555666666666666554
No 317
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=25.11 E-value=3.1e+02 Score=26.11 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhhHHHHHhHHHHHHHHHhHH
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANA----CFQTSQEQLNEMDNFIESLKESL 385 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~a----klEesE~EVaaLerrIelLKEel 385 (621)
+.+|+.+++.+..++++|+..-....+ .+++....+.+++..+..||+++
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dV 63 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADV 63 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhH
Confidence 456777777777777766665433222 22333444444444444444443
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.92 E-value=2.5e+02 Score=26.80 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesr 419 (621)
..+++...-|.+|++++.+.|.-++.-...+..+.+++.-+.++++....+
T Consensus 34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566778888888888888888888877777777777776654443
No 319
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=24.86 E-value=3.1e+02 Score=29.27 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhH
Q 007027 429 ILENQLRDLEIQLQQAKVSSEAS 451 (621)
Q Consensus 429 ~LE~QLKEa~~QLqhA~asaEas 451 (621)
.++.++.+++.+++.|.+-.+.+
T Consensus 103 ~~~a~l~~~~~~l~~a~~~l~~a 125 (370)
T PRK11578 103 EVEATLMELRAQRQQAEAELKLA 125 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444433
No 320
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.84 E-value=2.3e+02 Score=32.63 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (621)
.-|.|...||++|+...-.++.........+++|..|+..|..|+..+
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665543333222333333444444555555444444
No 321
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.81 E-value=4.5e+02 Score=30.32 Aligned_cols=163 Identities=19% Similarity=0.235 Sum_probs=97.8
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCc---------------hhhhhhHHHHHHHHHHHHHHhhhhh
Q 007027 384 SLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN---------------TKKVGILENQLRDLEIQLQQAKVSS 448 (621)
Q Consensus 384 el~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~d---------------eEK~~~LE~QLKEa~~QLqhA~asa 448 (621)
++.+-++..+-...+|. +...++-.+-+.-.+-+..... +.+...|=.||.++++.+--+....
T Consensus 59 ~v~~l~e~~~~~~~~rn-ae~ea~~v~~e~ed~tss~~dean~mva~aRke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql 137 (476)
T KOG4324|consen 59 KVHNLEEKLQLTETKRN-AESEADRVEVELEDLTSSLFDEANNMVANARKETYASEKRVNQLKKQLVEADTLLSSAQLQL 137 (476)
T ss_pred HHhcCccchhhcccccC-chhhhccccCCCcchhcccccccccccccccccchhhhhhhhhhhHHhhhhhcccchhhhhh
Confidence 34445555555666663 5555555555544443332211 4556677777777765554443333
Q ss_pred HhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh
Q 007027 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS 528 (621)
Q Consensus 449 Eas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t 528 (621)
..-+. |. + +++-+.=-+-|+..|.++.+-.-.--.+|-+||..-..+..|+.-+. +++..- --+.
T Consensus 138 ~~Lkv---mh-s-ms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s~e~~Elt-------~sLf~E---a~Km 202 (476)
T KOG4324|consen 138 DSLKV---MH-S-MSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLSQELEELT-------ASLFEE---AHKM 202 (476)
T ss_pred hHHHH---Hh-h-cchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccchhHHHHH-------HHHHHH---HHHH
Confidence 22222 11 1 44444455667888888887666666778777777776666655553 333221 1233
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (621)
+..+..|-++|+.+.+--...|+=|+.++-.++.
T Consensus 203 V~aA~~r~~~~ek~l~Esr~~i~~lqaEv~alk~ 236 (476)
T KOG4324|consen 203 VRAANPRQEFIEKQLTESRLKIDVLQAEVNALKT 236 (476)
T ss_pred hhhcccchhhhhhhhhHhHHHHHHHHHHHHHhHH
Confidence 6788899999999998888888888888776653
No 322
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.75 E-value=8e+02 Score=25.48 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=37.9
Q ss_pred HHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHH
Q 007027 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (621)
||..|+++-..+.+|..++=.|... +..+.-++...+.++......+..-...++.++.++.-..+.++.|.+++-
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~q----l~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQ----LRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 5666666666666655544444332 333333444444444444444444444555555555555555555555443
No 323
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.65 E-value=2e+02 Score=26.03 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=51.4
Q ss_pred hhhhhhh-hhHhhHHHhhhHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHHhccchHHHHhhh
Q 007027 223 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282 (621)
Q Consensus 223 Sla~eld-LEkkL~es~~~eeeLk~KL~~~---eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ 282 (621)
|+|.|+| ||.++..-+...+...-||+.. .....-||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5788886 9999999999888888888764 4568899999999999999999999888874
No 324
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.16 E-value=7.5e+02 Score=24.93 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=24.1
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
.++..+..++..|+..+.+...+......++..+-.++......+.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555444444443
No 325
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.84 E-value=5e+02 Score=22.75 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=50.4
Q ss_pred ccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCcccccccccCCcccccccccccchHH
Q 007027 133 CKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQ 212 (621)
Q Consensus 133 ~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eq 212 (621)
++.+..+|..+..+.. +..-+.+++-..+..||....+...++..+.... .|+++
T Consensus 2 ~e~lP~i~~~l~~~~~---d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~----------------------~s~ee 56 (83)
T PF07544_consen 2 IEFLPLIFDILHQISK---DPPLSSKDLDTATGSLKHKLQKARAAIRELPGID----------------------RSVEE 56 (83)
T ss_pred ccccchHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----------------------CCHHH
Confidence 3444555665521111 1455678888889999988888877776644211 37788
Q ss_pred HHHHHHHHHHhhhhhhhhhHh
Q 007027 213 QRHILRMLEKSLARELDLEKK 233 (621)
Q Consensus 213 qR~iLrMLekSla~eldLEkk 233 (621)
|-..++.|+..|++--.+=.+
T Consensus 57 q~~~i~~Le~~i~~k~~~L~~ 77 (83)
T PF07544_consen 57 QEEEIEELEEQIRKKREVLQK 77 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998876555333
No 326
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.83 E-value=97 Score=26.07 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=25.3
Q ss_pred hHHHHHhHHHHHHHHHhHHHhhhhhHHHHH
Q 007027 367 SQEQLNEMDNFIESLKESLYGAESRAESAE 396 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~rAEsRa~tAe 396 (621)
.|+.++.|+.+++..+..+..||.|+..+.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388889999999999999999998887753
No 327
>PRK10698 phage shock protein PspA; Provisional
Probab=23.76 E-value=8e+02 Score=25.13 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.2
Q ss_pred HHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhc
Q 007027 518 LNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS 574 (621)
Q Consensus 518 l~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t 574 (621)
...|..+|..| +..++....-....|.+|...+.+|+..|...+.+.+.|.......
T Consensus 87 Ar~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 87 ARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 4455566777788888888888889988888888888887766644
No 328
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=23.67 E-value=5.1e+02 Score=22.85 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhh
Q 007027 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 458 (621)
Q Consensus 379 elLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mk 458 (621)
.++...+.++++....-..-..... ++.++..-.+.|++. +..++.+|.+.+ .|+.+++.+-.+=+--
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~-~~~e~~~~~~eL~~~-------l~~ie~~L~DL~----~aV~ive~np~kF~l~ 75 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTS-SSEELKWLKRELRNA-------LQSIEWDLEDLE----EAVRIVEKNPSKFNLS 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC--HHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHCCHHHHT-H
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC-CcHhHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHhCccccCCC
Q ss_pred HHHHHhHHHHHHHHhhhhhh
Q 007027 459 YSAIWDMETLIEDLKSKVSK 478 (621)
Q Consensus 459 ysei~dme~vIEdLk~Kl~r 478 (621)
-.+|.+--..|.+++.++..
T Consensus 76 ~~Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 76 EEEISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
No 329
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.64 E-value=1.1e+03 Score=26.65 Aligned_cols=45 Identities=11% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
+..-|+-.|--++++--+-+-.++.....|-+-++-+.+|+||++
T Consensus 128 ~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 128 DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 334444444444444444455555555566666666666666655
No 330
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.57 E-value=7.3e+02 Score=24.62 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHH--Hhh--HHHHHHhHHHH
Q 007027 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK--AAS--AKEVNHRTKLM 539 (621)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k--~~t--lKeae~Rak~a 539 (621)
++..=++++|.++...-...+..+.++. ..|.+|-..-...+.+++.. ..| |+++..+--..
T Consensus 31 ~l~~EL~evk~~v~~~I~evD~Le~~er--------------~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 31 RLRKELEEVKEEVSEVIEEVDKLEKRER--------------QARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455665555544444444444 77777765555555555543 344 77777777677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007027 540 MEMVMQLATQRELIQKQVYSLT 561 (621)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~k 561 (621)
..-..+|...||.|+..+..+.
T Consensus 97 re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765543
No 331
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.54 E-value=1.8e+02 Score=26.80 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=40.4
Q ss_pred hhhHHHHHhHHHHHHHHHhHH-HhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHH
Q 007027 365 QTSQEQLNEMDNFIESLKESL-YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (621)
Q Consensus 365 EesE~EVaaLerrIelLKEel-~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLq 442 (621)
+..+.....++.-+++|-..| ..|=.-...|.-....+..-|..+.+.++..+. +++.|..||+..+..++
T Consensus 11 ~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~-------~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 11 EEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEA-------LLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCH-------CCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 334555555555555555555 445555555555555555666666666664444 36677777777764333
No 332
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.38 E-value=1.3e+02 Score=24.64 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCc
Q 007027 543 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 579 (621)
Q Consensus 543 V~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~ 579 (621)
..++..++..|+.++..++.+|..|..+++..++++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~ 55 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPD 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 3566777888888888888888888888887754444
No 333
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=23.21 E-value=3.7e+02 Score=30.59 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHhHHHh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~r 387 (621)
+.+..||+-+...|.||-.+.-.|.+|....|.- +..|++++.+|.+||..+..
T Consensus 2 ~~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd 67 (428)
T PF00846_consen 2 STLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLAD 67 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888899999998888888887776552 56888999999999888765
No 334
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=23.20 E-value=1e+03 Score=26.16 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007027 336 VLTMKEKVKSLEEQLKESEIR 356 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQ 356 (621)
+-.||+|++.||.+-......
T Consensus 162 le~Lq~Klk~LEeEN~~LR~E 182 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSE 182 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665544443
No 335
>PF13514 AAA_27: AAA domain
Probab=22.96 E-value=1.6e+03 Score=28.20 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=42.9
Q ss_pred hhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 007027 104 ILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (621)
Q Consensus 104 ildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~ 180 (621)
.+..=|++-|.+.|.+..+-..+... ..+...+......+.+.+..+.+...+.+.|......
T Consensus 527 ~fe~a~~~aD~laD~~~~~a~~~a~~--------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 589 (1111)
T PF13514_consen 527 AFEAAVREADELADRRLREAERAARL--------------AQLRARLEEARARLARAQARLAAAEAALAALEAAWAA 589 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888777666552 1235566666777777777777777777777776654
No 336
>PRK00295 hypothetical protein; Provisional
Probab=22.81 E-value=4.3e+02 Score=22.49 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 007027 540 MEMVMQLATQRELIQKQVYSLTSENKLLV 568 (621)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~keenK~L~ 568 (621)
-+.|.+.++++++|..++..+..+.+.+.
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35688888999999999999988888765
No 337
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.55 E-value=1.3e+03 Score=28.78 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=60.2
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
.+|.+-|-|++.-|...+-. ++|+. |..-. .+-+=|+-.|++.+ -+|++||+|+-..++
T Consensus 393 rsENaqLrRrLrilnqqlre-qe~~~----k~~~~----~~~n~El~sLqSlN-------~~Lq~ql~es~k~~e----- 451 (861)
T PF15254_consen 393 RSENAQLRRRLRILNQQLRE-QEKAE----KTSGS----QDCNLELFSLQSLN-------MSLQNQLQESLKSQE----- 451 (861)
T ss_pred hhhhHHHHHHHHHHHHHHHH-HHhhc----ccCCC----cccchhhHHHHHHH-------HHHHHHHHHHHHhHH-----
Confidence 45666777776666555433 12211 11111 12233444566653 478889988762222
Q ss_pred hHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhh-----hhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHh
Q 007027 448 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT-----ESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (621)
Q Consensus 448 aEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~Ra-----E~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~ 522 (621)
-+-..-..++.|||-++.+--|...-. +..+.|-. ..-.+..+.-|+...=.+++++.-+|+.+.
T Consensus 452 ---------~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~-~d~e~~rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 452 ---------LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQ-FDIETTRIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred ---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 233344445555554444433322110 11111110 111111344445455557778877777776
Q ss_pred HHHHhh
Q 007027 523 IEKAAS 528 (621)
Q Consensus 523 q~k~~t 528 (621)
-+..-.
T Consensus 522 kEN~iL 527 (861)
T PF15254_consen 522 KENQIL 527 (861)
T ss_pred hhhhHh
Confidence 655544
No 338
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.24 E-value=1e+03 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHHhhhHH
Q 007027 430 LENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (621)
Q Consensus 430 LE~QLKEa~~QLqhA~asaEas~eqQ~mkys 460 (621)
++++-.-++.||+.|+-.||-.+.+++-.+.
T Consensus 352 ~~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 352 YNKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 3334445555666666888888775554443
No 339
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.72 E-value=5.7e+02 Score=24.99 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=5.0
Q ss_pred HHHhHHHHHH
Q 007027 461 AIWDMETLIE 470 (621)
Q Consensus 461 ei~dme~vIE 470 (621)
-+.|.-++|-
T Consensus 116 ~I~r~~~li~ 125 (192)
T PF05529_consen 116 VIRRVHSLIK 125 (192)
T ss_pred HHHHHHHHHH
Confidence 4555555444
No 340
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=21.55 E-value=2.9e+02 Score=27.04 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCCCceeeeccCCCCCcce
Q 007027 536 TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKEL 593 (621)
Q Consensus 536 ak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~~~~~~~~~~~~~~~~~~~ 593 (621)
.+-+|+++.++..+++.++.++....++.+.|..+++.+..+.-+.=|++|+.-..++
T Consensus 41 ~~~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvvRYnAF~dmGg~L 98 (151)
T PF14584_consen 41 GKNLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVVRYNAFEDMGGDL 98 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEccCcccccccc
Confidence 3456889999999999999999999999999999999998888888899988665554
No 341
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.55 E-value=1.5e+03 Score=27.37 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=12.0
Q ss_pred eeeccCCCcccchhcchHHHHhhhh
Q 007027 593 LLINPTNNLAGATVKTSEDAVSLMK 617 (621)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (621)
|-|.+--...++|..-|.|+=-+..
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~ 386 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQ 386 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHH
Confidence 4444444444555555555444433
No 342
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.14 E-value=1.1e+03 Score=26.06 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhcCCccccccC
Q 007027 62 NLHVLLMYLLARGDDLETLVME 83 (621)
Q Consensus 62 NL~~l~M~~~~~~~~~E~~~~~ 83 (621)
.|.-.+|..+. .+|+++--.
T Consensus 47 ~L~~WL~~~~g--~~f~~p~e~ 66 (359)
T PF10498_consen 47 SLCAWLISKAG--RKFEQPQEY 66 (359)
T ss_pred HHHHHHHHhcC--CCCCCCccc
Confidence 46667777665 788865443
No 343
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=21.08 E-value=1.1e+03 Score=26.27 Aligned_cols=113 Identities=22% Similarity=0.254 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHH--HhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHH
Q 007027 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI--WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 502 (621)
Q Consensus 425 EK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei--~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeE 502 (621)
-|+..||+.|.+.+ .+ ...-+-.|+-+..-+ +-.+-.||+|+.|++--- .++.- .+++
T Consensus 191 akVA~LE~Rlt~lE----~v---vg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~------~~~ld-------~vEq 250 (371)
T KOG3958|consen 191 AKVAELEKRLTELE----TV---VGCDQDAQNPLSAGLQGACVLETVELLQAKVSALD------LAVLD-------QVEQ 250 (371)
T ss_pred HHHHHHHHHHHHHH----HH---HcCCccccCchhhccCCchHHHHHHHHHHHHHhhC------HHHHH-------HHHH
Confidence 68999999998766 33 333233344333321 234556788888866211 12222 4556
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHhh------HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 007027 503 KQSFMRDKIKILESSLNRANIEKAAS------AKEVNHRTKLM----MEMVMQLATQRELIQKQVYS 559 (621)
Q Consensus 503 EL~~l~~~lksLE~sl~kA~q~k~~t------lKeae~Rak~a----E~lV~KL~~ErdrLe~ql~s 559 (621)
-|..|-+++... +--++++..-..+ +=|+-.|...| -.+|.++ .-+.+||.|...
T Consensus 251 RL~s~lgK~~~I-aEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl-~al~~LHeqa~~ 315 (371)
T KOG3958|consen 251 RLQSVLGKVNEI-AEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRL-VALKQLHEQAMQ 315 (371)
T ss_pred HHHHHHHHHHHH-HHhhccccccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHH-HHHHHHHHHHHH
Confidence 666666666643 1123333322222 44444453332 3456666 567778877544
No 344
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.96 E-value=6.8e+02 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhh
Q 007027 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (621)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~ 573 (621)
++....+++++-+..|...++.|+.+|.........+...+.+
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777777777777777777766666654
No 345
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=20.88 E-value=1.6e+03 Score=27.56 Aligned_cols=301 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred hHHHhhhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhccchHHHHhhhhHHHHhhhhHHhhhccccccchhHHHHHHhh
Q 007027 234 ISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 313 (621)
Q Consensus 234 L~es~~~eeeLk~KL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL~~ 313 (621)
|.+.+..++++..=....-+.+-.||--+..+- ++.-||-+..+=.+.+..-+.+-..+--+|--..+||=+=--++
T Consensus 72 lqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele-~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~-- 148 (739)
T PF07111_consen 72 LQELRRLEEEVRALRETSLQQKMRLEAQAEELE-ALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRL-- 148 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHH--
Q ss_pred HHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHH
Q 007027 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (621)
Q Consensus 314 ~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (621)
-...|..|...--.++.+|..|+..||+.|.........-. .+++...+.-..|...++++...+.
T Consensus 149 -------Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~-------~~La~~q~e~d~L~~qLsk~~~~le 214 (739)
T PF07111_consen 149 -------HQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEA-------KELAEAQREADLLREQLSKTQEELE 214 (739)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHhhhhHHHH----------HHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHH
Q 007027 394 SAEEKVTQLTDTNLELS----------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463 (621)
Q Consensus 394 tAesKle~LseTNdELe----------relk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~ 463 (621)
+-.+-+..|-.-.-+.- .++..|... |.-|+.-=--.. +.++=-+- ....+.
T Consensus 215 ~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~t-------Vq~L~edR~~L~-------~T~ELLqV----RvqSLt 276 (739)
T PF07111_consen 215 AQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLET-------VQHLQEDRDALQ-------ATAELLQV----RVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHH----HHHHHH
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhhh----hhh---------------hhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHH
Q 007027 464 DMETLIEDLKSKVSKAESKTESVE----EQC---------------IVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (621)
Q Consensus 464 dme~vIEdLk~Kl~rAE~RaE~aE----sK~---------------~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~ 524 (621)
+|+++-| .++.+=-.-.+..| .|| +-|-.--++++..++-+++++.+||..+....++
T Consensus 277 ~IL~LQE---eEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qE 353 (739)
T PF07111_consen 277 DILTLQE---EELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQELEHRDSVKQLRGQVASLQEEVASQQQE 353 (739)
T ss_pred HHHHHHH---HHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHh-HHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 525 KAASAKEVNHR-TKLMMEMVMQ--LATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 525 k~~tlKeae~R-ak~aE~lV~K--L~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
..--.--+..| |++-..-|.. |+.+..+-++.-..+...+..-...|+
T Consensus 354 qaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk 404 (739)
T PF07111_consen 354 QAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLK 404 (739)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.35 E-value=56 Score=29.44 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=50.1
Q ss_pred HHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhh---HHHHHHHHHHHHHhhHhhhhhhhhcccCCC
Q 007027 118 TIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGS---LKESQEHVSELKMQSAKFQRVLSYFIHGNN 186 (621)
Q Consensus 118 ~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~s---Lkq~~e~~~ei~~qsa~f~r~~~~~~~~~~ 186 (621)
++..+|....+++++|.+-- +.|+.+|+..+-| =+.+.+....|+.+..+.++-+..++..|.
T Consensus 2 ~V~~eId~lEekl~~cr~~l------e~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRL------EAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHH------HHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 35678999999999999833 4578999986544 466778899999999999999988886554
No 347
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=20.25 E-value=5.1e+02 Score=21.53 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQN 359 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~ 359 (621)
+.|..-|++++..++.++..+...|.+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356677888888888888888877654
No 348
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.19 E-value=4.4e+02 Score=20.81 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 351 KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 351 des~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
+.....+...+.-.-..-.+|..-+..|..+...+.+|..++..+..++..+.+.
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333334456777778889999999999999999999888877654
No 349
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=20.05 E-value=1.4e+03 Score=26.38 Aligned_cols=50 Identities=36% Similarity=0.482 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHHHhh--------hhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhh
Q 007027 426 KVGILENQLRDLEIQLQQAK--------VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~--------asaEas~eqQ~mkysei~dme~vIEdLk~Kl~r 478 (621)
|-..||.||.++ ++||++. ++.|....=|+ |+-.+|..-.+|-+++-+.|
T Consensus 307 R~erLEEqLNdl-teLqQnEi~nLKqElasmeervaYQs--yERaRdIqEalEscqtrisK 364 (455)
T KOG3850|consen 307 RYERLEEQLNDL-TELQQNEIANLKQELASMEERVAYQS--YERARDIQEALESCQTRISK 364 (455)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 456677777766 4555443 55555554444 66777777666655555543
Done!