Query 007027
Match_columns 621
No_of_seqs 95 out of 105
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:15:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b9c_A Striated-muscle alpha t 99.9 3.5E-25 1.2E-29 206.1 9.3 138 374-532 1-138 (147)
2 2efr_A General control protein 99.9 6E-21 2.1E-25 179.4 16.5 122 426-575 1-132 (155)
3 1c1g_A Tropomyosin; contractIl 98.9 3.2E-05 1.1E-09 71.2 34.4 79 338-416 52-130 (284)
4 1c1g_A Tropomyosin; contractIl 98.7 0.00016 5.4E-09 66.6 32.9 77 338-414 87-163 (284)
5 2z5i_A TM, general control pro 98.6 8.1E-08 2.8E-12 75.9 6.1 45 531-575 2-46 (52)
6 2efr_A General control protein 98.4 5.2E-06 1.8E-10 78.4 15.7 90 342-445 1-90 (155)
7 1i84_S Smooth muscle myosin he 98.3 5.8E-07 2E-11 105.3 7.9 8 112-119 666-673 (1184)
8 3u1c_A Tropomyosin alpha-1 cha 98.3 5.4E-06 1.9E-10 72.7 10.5 52 333-384 43-101 (101)
9 1i84_S Smooth muscle myosin he 98.2 9E-07 3.1E-11 103.6 6.2 17 242-258 881-897 (1184)
10 1ic2_A Tropomyosin alpha chain 98.1 1.3E-05 4.3E-10 67.6 9.4 70 338-407 3-79 (81)
11 3u59_A Tropomyosin beta chain; 98.0 1.7E-05 5.7E-10 69.3 8.9 52 333-384 43-101 (101)
12 2b9c_A Striated-muscle alpha t 97.6 0.0018 6.1E-08 60.5 15.3 141 286-437 1-141 (147)
13 3u1c_A Tropomyosin alpha-1 cha 97.5 0.0012 4E-08 58.0 11.5 81 338-418 6-93 (101)
14 3vkg_A Dynein heavy chain, cyt 97.3 0.037 1.3E-06 71.5 26.6 181 356-570 1921-2106(3245)
15 3u59_A Tropomyosin beta chain; 97.0 0.0062 2.1E-07 53.1 11.2 81 339-419 7-94 (101)
16 3mud_A DNA repair protein XRCC 96.7 0.00078 2.7E-08 64.8 3.6 47 529-575 116-169 (175)
17 3na7_A HP0958; flagellar bioge 96.5 0.23 8E-06 49.0 19.5 144 288-438 11-163 (256)
18 1ic2_A Tropomyosin alpha chain 96.1 0.02 6.9E-07 48.1 8.0 70 287-367 5-74 (81)
19 3na7_A HP0958; flagellar bioge 96.0 0.73 2.5E-05 45.4 20.1 53 340-399 31-83 (256)
20 3vkg_A Dynein heavy chain, cyt 95.8 0.42 1.4E-05 62.1 21.5 189 307-514 1908-2103(3245)
21 2v71_A Nuclear distribution pr 95.6 0.7 2.4E-05 45.0 17.6 75 485-567 106-180 (189)
22 3o0z_A RHO-associated protein 95.2 1.4 4.9E-05 42.2 17.8 60 423-482 4-63 (168)
23 2v71_A Nuclear distribution pr 93.0 6.2 0.00021 38.4 17.6 55 338-392 21-79 (189)
24 2fxo_A Myosin heavy chain, car 92.5 2.5 8.4E-05 38.1 13.3 107 461-567 14-123 (129)
25 2fxo_A Myosin heavy chain, car 91.5 3.5 0.00012 37.2 13.0 79 334-412 34-112 (129)
26 3o0z_A RHO-associated protein 91.4 5.2 0.00018 38.4 14.8 113 297-416 18-137 (168)
27 2dfs_A Myosin-5A; myosin-V, in 91.4 4.2 0.00014 48.2 17.0 66 365-440 973-1038(1080)
28 3mtu_E Head morphogenesis prot 91.1 0.18 6.1E-06 43.0 3.9 30 546-575 42-71 (77)
29 3oja_B Anopheles plasmodium-re 90.0 2.1 7.2E-05 45.6 12.0 103 334-443 456-562 (597)
30 2dfs_A Myosin-5A; myosin-V, in 88.4 10 0.00036 44.9 17.1 20 52-71 453-475 (1080)
31 3oja_B Anopheles plasmodium-re 87.8 17 0.00057 38.7 16.9 74 499-572 506-582 (597)
32 3bas_A Myosin heavy chain, str 80.6 12 0.0004 31.9 9.7 28 392-419 58-85 (89)
33 2ocy_A RAB guanine nucleotide 75.3 46 0.0016 31.4 12.9 35 370-404 59-93 (154)
34 3hnw_A Uncharacterized protein 73.7 11 0.00039 34.6 8.2 50 368-417 81-130 (138)
35 3tnu_B Keratin, type II cytosk 72.8 16 0.00055 32.7 8.8 20 367-386 34-53 (129)
36 2k48_A Nucleoprotein; viral pr 71.4 17 0.00058 32.6 8.4 57 333-389 34-102 (107)
37 2v66_B Nuclear distribution pr 70.5 47 0.0016 29.9 11.1 51 336-386 51-101 (111)
38 1gd2_E Transcription factor PA 69.9 8.2 0.00028 32.1 5.7 48 519-566 21-68 (70)
39 3i00_A HIP-I, huntingtin-inter 69.7 11 0.00038 34.1 7.0 101 298-401 6-110 (120)
40 2e7s_A RAB guanine nucleotide 69.1 11 0.00036 35.2 6.8 19 385-403 62-80 (135)
41 2zqm_A Prefoldin beta subunit 68.5 51 0.0017 28.0 10.7 39 529-567 72-110 (117)
42 3mq9_A Bone marrow stromal ant 67.7 28 0.00095 36.2 10.5 71 376-449 397-467 (471)
43 2ic6_A Nucleocapsid protein; h 65.6 27 0.00094 29.8 8.1 55 334-388 5-71 (78)
44 3tnu_A Keratin, type I cytoske 63.8 28 0.00095 31.3 8.4 19 368-386 37-55 (131)
45 3hnw_A Uncharacterized protein 63.1 35 0.0012 31.3 9.1 53 339-391 80-132 (138)
46 2k48_A Nucleoprotein; viral pr 61.2 8 0.00027 34.7 4.2 74 279-353 26-101 (107)
47 2ic9_A Nucleocapsid protein; h 60.6 32 0.0011 30.4 7.9 57 334-390 5-73 (96)
48 3mq9_A Bone marrow stromal ant 59.7 1.5E+02 0.0051 30.7 14.3 72 426-514 398-469 (471)
49 2v4h_A NF-kappa-B essential mo 58.7 82 0.0028 28.5 10.3 82 468-564 25-106 (110)
50 2ic6_A Nucleocapsid protein; h 58.5 12 0.0004 32.1 4.6 65 378-446 7-73 (78)
51 1fxk_A Prefoldin; archaeal pro 55.8 90 0.0031 26.1 10.4 36 529-564 67-102 (107)
52 3azd_A Short alpha-tropomyosin 54.4 4.9 0.00017 29.6 1.5 31 334-364 4-34 (37)
53 4fi5_A Nucleoprotein; structur 54.0 14 0.00048 33.5 4.6 66 378-447 24-91 (113)
54 3tnu_A Keratin, type I cytoske 53.7 1.2E+02 0.0041 27.1 10.7 73 333-405 37-113 (131)
55 2ic9_A Nucleocapsid protein; h 53.5 15 0.00051 32.5 4.6 66 377-446 6-73 (96)
56 2i1j_A Moesin; FERM, coiled-co 53.0 33 0.0011 37.8 8.4 31 461-491 427-457 (575)
57 4fi5_A Nucleoprotein; structur 52.9 53 0.0018 29.8 8.1 56 335-390 23-90 (113)
58 2i1j_A Moesin; FERM, coiled-co 51.2 16 0.00056 40.2 5.6 17 377-393 364-380 (575)
59 3tnu_B Keratin, type II cytosk 50.9 1.3E+02 0.0046 26.6 11.9 73 333-405 35-111 (129)
60 2jee_A YIIU; FTSZ, septum, coi 50.3 61 0.0021 27.8 7.7 59 458-516 18-76 (81)
61 3mq7_A Bone marrow stromal ant 45.5 1.8E+02 0.0062 26.6 11.1 23 339-361 23-45 (121)
62 2v4h_A NF-kappa-B essential mo 45.4 1.7E+02 0.0059 26.4 10.3 53 305-358 27-79 (110)
63 1jcd_A Major outer membrane li 45.0 71 0.0024 25.2 6.8 27 368-394 24-50 (52)
64 4ev6_A Magnesium transport pro 43.1 2.4E+02 0.0083 28.3 12.3 60 99-180 156-215 (339)
65 3efg_A Protein SLYX homolog; x 42.1 55 0.0019 27.5 6.2 48 528-575 15-62 (78)
66 2v66_B Nuclear distribution pr 40.6 2E+02 0.007 25.8 12.6 14 302-315 3-16 (111)
67 3jsv_C NF-kappa-B essential mo 40.2 1.8E+02 0.0062 25.6 9.3 88 469-571 4-91 (94)
68 3mov_A Lamin-B1; LMNB1, B-type 40.1 70 0.0024 27.7 6.7 64 329-402 7-70 (95)
69 4emc_A Monopolin complex subun 38.5 46 0.0016 32.6 5.8 45 314-358 11-65 (190)
70 3bas_A Myosin heavy chain, str 38.1 1.8E+02 0.0062 24.5 10.4 25 537-561 59-83 (89)
71 1sjj_A Actinin; 3-helix bundle 38.1 4.6E+02 0.016 29.2 26.6 265 108-397 306-599 (863)
72 1v9d_A Diaphanous protein homo 37.7 1.9E+02 0.0066 29.3 10.7 108 59-182 176-283 (340)
73 3mq7_A Bone marrow stromal ant 37.5 95 0.0032 28.4 7.3 72 374-448 23-94 (121)
74 3s4r_A Vimentin; alpha-helix, 37.1 1.5E+02 0.0053 25.3 8.4 29 391-419 17-45 (93)
75 1t2k_D Cyclic-AMP-dependent tr 36.5 1.4E+02 0.0046 23.4 7.4 44 519-562 14-57 (61)
76 1go4_E MAD1 (mitotic arrest de 36.2 1.5E+02 0.005 26.3 8.2 21 540-560 74-94 (100)
77 3htk_A Structural maintenance 36.0 1.5E+02 0.005 22.8 8.2 48 337-384 8-55 (60)
78 1m1j_B Fibrinogen beta chain; 35.1 3.6E+02 0.012 29.4 12.7 29 377-405 101-129 (464)
79 4emc_A Monopolin complex subun 35.0 1E+02 0.0035 30.2 7.6 46 478-523 10-55 (190)
80 3qh9_A Liprin-beta-2; coiled-c 34.8 1.4E+02 0.0048 25.7 7.5 32 334-365 26-57 (81)
81 2lw1_A ABC transporter ATP-bin 34.7 1.2E+02 0.0042 25.3 7.3 58 335-393 23-80 (89)
82 3t98_B Nucleoporin NUP58/NUP45 33.3 1.7E+02 0.0058 25.4 8.0 69 499-567 16-84 (93)
83 2ocy_A RAB guanine nucleotide 32.9 3.2E+02 0.011 25.8 16.2 19 341-359 13-31 (154)
84 3a7o_A Autophagy protein 16; c 32.8 2.3E+02 0.0077 24.0 8.4 30 546-575 44-73 (75)
85 3jsv_C NF-kappa-B essential mo 32.7 1.5E+02 0.005 26.2 7.5 78 305-383 5-89 (94)
86 3azd_A Short alpha-tropomyosin 31.4 15 0.0005 27.1 0.9 31 369-399 4-34 (37)
87 3i00_A HIP-I, huntingtin-inter 30.5 2E+02 0.0069 25.9 8.3 20 472-491 90-109 (120)
88 3cve_A Homer protein homolog 1 30.0 2.1E+02 0.0072 24.0 7.7 33 326-359 7-39 (72)
89 4gkw_A Spindle assembly abnorm 29.8 3.5E+02 0.012 25.4 15.4 58 331-388 8-65 (167)
90 2oqq_A Transcription factor HY 29.7 1.4E+02 0.0047 22.9 5.9 39 527-572 3-41 (42)
91 3swy_A Cyclic nucleotide-gated 29.3 1.6E+02 0.0054 22.8 6.4 44 338-384 2-45 (46)
92 2e7s_A RAB guanine nucleotide 28.7 62 0.0021 30.1 4.7 21 378-398 48-68 (135)
93 4abm_A Charged multivesicular 28.4 2.6E+02 0.0089 23.4 9.9 33 528-560 46-78 (79)
94 1lwu_C Fibrinogen gamma chain; 28.4 95 0.0033 32.3 6.6 50 340-389 4-53 (323)
95 1deq_A Fibrinogen (alpha chain 26.9 5.9E+02 0.02 27.4 12.3 55 461-515 135-189 (390)
96 3ghg_A Fibrinogen alpha chain; 26.4 3.7E+02 0.013 30.1 11.0 21 224-244 56-76 (562)
97 1ux5_A BNI1 protein; structura 26.1 2.1E+02 0.0071 29.8 8.8 106 63-182 261-368 (411)
98 1t2k_D Cyclic-AMP-dependent tr 25.9 72 0.0025 25.1 4.1 35 483-517 24-58 (61)
99 1l8d_A DNA double-strand break 25.8 3E+02 0.01 23.2 10.9 22 499-520 21-42 (112)
100 3ghg_A Fibrinogen alpha chain; 24.7 2.4E+02 0.0082 31.5 9.1 25 336-363 140-164 (562)
101 1jnm_A Proto-oncogene C-JUN; B 24.7 1.9E+02 0.0066 22.7 6.4 43 519-561 14-56 (62)
102 2jee_A YIIU; FTSZ, septum, coi 24.3 3.4E+02 0.011 23.3 10.0 63 337-399 16-78 (81)
103 1dh3_A Transcription factor CR 24.3 1.7E+02 0.0059 22.8 5.9 40 518-564 13-52 (55)
104 2akf_A Coronin-1A; coiled coil 23.9 65 0.0022 23.1 3.0 18 541-558 13-30 (32)
105 2zqm_A Prefoldin beta subunit 23.8 3.3E+02 0.011 22.9 9.2 24 305-328 23-46 (117)
106 1wt6_A Myotonin-protein kinase 23.0 2.3E+02 0.0078 24.4 6.8 33 476-515 40-72 (81)
107 1gl2_D Syntaxin 8, vesicle tra 22.7 2.5E+02 0.0085 22.0 6.7 54 349-402 10-63 (65)
108 3nmd_A CGMP dependent protein 22.7 2.5E+02 0.0086 23.6 6.9 42 346-387 24-65 (72)
109 1fxk_A Prefoldin; archaeal pro 22.2 3.4E+02 0.012 22.5 8.7 24 305-328 18-41 (107)
110 1t6f_A Geminin; coiled-coil, c 21.9 84 0.0029 23.4 3.4 26 544-569 10-35 (37)
111 2eqb_B RAB guanine nucleotide 21.9 4.1E+02 0.014 23.4 11.6 18 465-482 24-41 (97)
112 4etp_A Kinesin-like protein KA 21.4 1.4E+02 0.0046 31.6 6.3 16 602-617 238-253 (403)
113 3cvf_A Homer-3, homer protein 20.7 2.7E+02 0.0093 23.6 6.8 62 319-381 6-74 (79)
114 3ol1_A Vimentin; structural ge 20.6 4.4E+02 0.015 23.2 12.2 79 333-418 19-104 (119)
115 2j1d_G DAAM1, disheveled-assoc 20.5 2.3E+02 0.008 30.3 8.0 110 58-182 257-366 (483)
116 3swf_A CGMP-gated cation chann 20.2 2.7E+02 0.0092 23.5 6.6 45 338-385 4-48 (74)
117 4dnd_A Syntaxin-10, SYN10; str 20.1 4.9E+02 0.017 23.5 9.0 93 380-483 31-128 (130)
No 1
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=99.91 E-value=3.5e-25 Score=206.14 Aligned_cols=138 Identities=22% Similarity=0.321 Sum_probs=125.2
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHH
Q 007027 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (621)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e 453 (621)
|+|+|++|++++.+|++|+.+|..||..+++++++++|.+++|++|+..+++|++.||.||++++ .+|+++++
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak-------~~aeeadr 73 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAK-------HIAEDADR 73 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988 99999999
Q ss_pred HHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHH
Q 007027 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (621)
Q Consensus 454 qQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKea 532 (621)
+|++++|+++|++ ++|.||+.|++.+|++|. +|+++|+.++++|||||++..+|+++++.|-..|
T Consensus 74 ----KyeE~~RKl~~~E---~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 74 ----KYEEVARKLVIIE---SDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp ----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999 9999999999999999999999999999996554
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=99.86 E-value=6e-21 Score=179.38 Aligned_cols=122 Identities=17% Similarity=0.281 Sum_probs=117.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 007027 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~ 505 (621)
||+.||.|||++ ++++++ +|++++| +| ++|+|||+|++.+|+||. +|+++|+
T Consensus 1 r~~~lE~qlkea----------ae~ad~----KyeEvaR----~E---~dLEraEERae~aE~k~~-------eLEeeL~ 52 (155)
T 2efr_A 1 RMKQLEDKVEEL----------LSKNYH----LENEVAR----LK---KLLERAEERAELSEGKSA-------ELEEELK 52 (155)
T ss_dssp CHHHHHHHHHHH----------HHHHHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHH----------HHHhHH----HHHHHHH----HH---HHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 588999999985 689999 9999999 77 999999999999999999 9999999
Q ss_pred HHHhhHHHHHHHHHHHhHHHHhh----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 506 FMRDKIKILESSLNRANIEKAAS----------AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 506 ~l~~~lksLE~sl~kA~q~k~~t----------lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.+++++||||++..+|+++++.| +|++++|++|+++.|++|++++|+|++.|.+.+.+|+.+.++||+|-
T Consensus 53 ~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999873
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.87 E-value=3.2e-05 Score=71.24 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
.+...+..+...+.....++..+...+...+.++..+..++..+...+.+.+.++.....++..+...-.++...+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (284)
T 1c1g_A 52 ATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVI 130 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444445555555555555555555555555555555555554444444444444
No 4
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.69 E-value=0.00016 Score=66.64 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhh
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 414 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk 414 (621)
.+..++..++.++......+......+......+..+...+..+...+...+.....+..++..+......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 163 (284)
T 1c1g_A 87 SLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333444444444444444444444444444444444333333333333
No 5
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=98.57 E-value=8.1e-08 Score=75.88 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 531 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 531 eae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
++-+||+||||+|+||+++||||++.+++.|++|+.+.+++|+|=
T Consensus 2 ~~~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl 46 (52)
T 2z5i_A 2 ELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHAL 46 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999985
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=98.44 E-value=5.2e-06 Score=78.39 Aligned_cols=90 Identities=24% Similarity=0.349 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCC
Q 007027 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (621)
Q Consensus 342 KvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~ 421 (621)
++.+||.||+++ ...|.-+. .+++. ++.++.|||+|+..|++||..|...-.-....+|.|+.+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Ky----eEvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLE----NEVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 356788888877 33333332 24444 99999999999999999999998887777777777777655
Q ss_pred CchhhhhhHHHHHHHHHHHHHHhh
Q 007027 422 SNTKKVGILENQLRDLEIQLQQAK 445 (621)
Q Consensus 422 ~deEK~~~LE~QLKEa~~QLqhA~ 445 (621)
..++|.+..|.||+.+..+|..|.
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE 90 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAE 90 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666655553333333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.33 E-value=5.8e-07 Score=105.25 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 007027 112 VERLLDTI 119 (621)
Q Consensus 112 le~~~~~l 119 (621)
|..+|++|
T Consensus 666 l~~L~~~l 673 (1184)
T 1i84_S 666 LTKLMTTL 673 (1184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 8
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=98.25 E-value=5.4e-06 Score=72.75 Aligned_cols=52 Identities=8% Similarity=0.279 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (621)
+.|+.+|++|++.+|++|+.++.+|..|+.+++.. +++|++|+|||++|+++
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 78999999999999999999999999999999875 67999999999999874
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.21 E-value=9e-07 Score=103.64 Aligned_cols=17 Identities=12% Similarity=0.028 Sum_probs=6.3
Q ss_pred HHHhhhhhhhhHHHHHH
Q 007027 242 EQLKLKLHHTEQVAFRM 258 (621)
Q Consensus 242 eeLk~KL~~~eqe~~~l 258 (621)
.++..++...++++..+
T Consensus 881 ~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 10
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=98.11 E-value=1.3e-05 Score=67.63 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNd 407 (621)
.+.+|+..+..+.+.+..++..+..++... +++|.+|+++|+.|+++++++++|+..|..||..++++++
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~ 79 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKAT 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999888888664 7799999999999999999999999999999999998765
No 11
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=98.03 E-value=1.7e-05 Score=69.34 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HHHHHhHHHHHHHHHhH
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLNEMDNFIESLKES 384 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~EVaaLerrIelLKEe 384 (621)
+.++.+|++|++.+|++++.++.+|..++.+++.. +++|++|+|||++|+++
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe 101 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 68999999999999999999999999999888774 77999999999999874
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=97.59 E-value=0.0018 Score=60.52 Aligned_cols=141 Identities=24% Similarity=0.261 Sum_probs=97.5
Q ss_pred HHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 007027 286 MLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (621)
Q Consensus 286 l~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (621)
|.-|++.++-+|.-+.-|=.....||..+.......+....-|+.. -..--+|+..||.+|++.......|
T Consensus 1 l~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeea----- 71 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDA----- 71 (147)
T ss_dssp ----------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3467888888888888777777778877776666555555555443 1122346666666666655555444
Q ss_pred hhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHH
Q 007027 366 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (621)
Q Consensus 366 esE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa 437 (621)
........|++..++.++.+|+.|+..++++|..|...-.-....++.|+-.......|-+..|.+++..
T Consensus 72 --drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L 141 (147)
T 2b9c_A 72 --DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARL 141 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTS
T ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999999998888899999988776677777777777643
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.46 E-value=0.0012 Score=57.96 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhh-------hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACF-------QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~akl-------EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELe 410 (621)
...+|++.|-.+.+.+......+..++ ...+.+|++|+++|+.++.+++++++++..|..++....+...+.+
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE 85 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAE 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777666666666655554444 3358899999999999999999999999999999999999999888
Q ss_pred HHhhhhhc
Q 007027 411 EEINFLKG 418 (621)
Q Consensus 411 relk~Les 418 (621)
.+...|--
T Consensus 86 ~ev~~L~R 93 (101)
T 3u1c_A 86 SEVASLNR 93 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.29 E-value=0.037 Score=71.49 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=121.4
Q ss_pred HHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHH
Q 007027 356 RLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR 435 (621)
Q Consensus 356 QL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLK 435 (621)
.+..--.|+.++.++|+.|+..+..++-.+..+...++....+...-+..|++-..... ..+.++.
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~--------------~~~~~~~ 1986 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDAR--------------ELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 34455566777788888888888888888887776666665555544444333222211 1111221
Q ss_pred HHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHH--HHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHH
Q 007027 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLI--EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513 (621)
Q Consensus 436 Ea~~QLqhA~asaEas~eqQ~mkysei~dme~vI--EdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lks 513 (621)
+ |...+.+...+.++ ++..+. +=++.++..||.++..++.+.. +...+|+.+..++..
T Consensus 1987 ~---~~~ei~~~k~~~e~----------dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~-------~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A 1987 V---RNKEIAVQKVKAYA----------DLEKAEPTGPLREEVEQLENAANELKLKQD-------EIVATITALEKSIAT 2046 (3245)
T ss_dssp H---HHHHHHHHHHHHHH----------CC-------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHH----------HHhhcCCCChHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 1 11111111111111 111111 5667788888888888888888 888999999999999
Q ss_pred HHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 007027 514 LESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (621)
Q Consensus 514 LE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ek 570 (621)
|+...+++..++..- ++....|-.-|++++..|..|+.|=..++..++..++.|...
T Consensus 2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHH
Confidence 999999998888776 666778889999999999999999999999888877776544
No 15
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=97.01 E-value=0.0062 Score=53.09 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHH
Q 007027 339 MKEKVKSLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (621)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ak-------lEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELer 411 (621)
..+|++.|-.+.+.+......+... ....+.+|.+++++|+.++.++++++.++..+..++....+...+.+.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655555555554444433 344588999999999999999999999999999999999999999999
Q ss_pred HhhhhhcC
Q 007027 412 EINFLKGN 419 (621)
Q Consensus 412 elk~Lesr 419 (621)
++..|--|
T Consensus 87 evasLnRr 94 (101)
T 3u59_A 87 EVASLNRR 94 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877553
No 16
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=96.74 E-value=0.00078 Score=64.83 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=44.9
Q ss_pred HHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 529 AKEVNHRTK-------LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 529 lKeae~Rak-------~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
+|.+..|++ ++++.|++|++++|+|++.+..+|++|+.+.++||+|-
T Consensus 116 Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 116 LEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999 99999999999999999999999999999999999984
No 17
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.49 E-value=0.23 Score=49.00 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=88.5
Q ss_pred hhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-
Q 007027 288 GRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT- 366 (621)
Q Consensus 288 gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe- 366 (621)
-.||.+-..+.....+=..+...+......+......+..+. .++..+...++.+|.+++....++...+..+..
T Consensus 11 ~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~----~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE----EEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666656655555555566666666666655555555443 345555555556666655555555544444432
Q ss_pred --------hHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHH
Q 007027 367 --------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 438 (621)
Q Consensus 367 --------sE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~ 438 (621)
...+|..+.++|..+++++.....+.+.....+..+...-.++...+..++.. -+..+..++.++....
T Consensus 87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL---VENEVKNIKETQQIIF 163 (256)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 25577788888888888888888888877777777777777777777666654 2344555555555444
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=96.06 E-value=0.02 Score=48.10 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=48.4
Q ss_pred HhhhhHHhhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 007027 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (621)
Q Consensus 287 ~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEe 366 (621)
..|++.++.+.-.+.-|=..+..+|+.+. ....++ ++|+.+|++|++.||.+|+.++++|..|..+|+.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e-------~~~~~~----E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAE-------ERSKQL----EDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666665444443333344443333 333222 6889999999999999999999999999999886
Q ss_pred h
Q 007027 367 S 367 (621)
Q Consensus 367 s 367 (621)
.
T Consensus 74 a 74 (81)
T 1ic2_A 74 A 74 (81)
T ss_dssp H
T ss_pred H
Confidence 5
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.00 E-value=0.73 Score=45.44 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
...+..++.++.....++..+ ..++.++++.+..++.++.....|......++
T Consensus 31 p~el~~le~~~~~l~~~~~~~-------~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNL-------EEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443 33444444444444444444444444444444
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.78 E-value=0.42 Score=62.11 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=89.7
Q ss_pred HHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHH----H
Q 007027 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESL----K 382 (621)
Q Consensus 307 l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelL----K 382 (621)
+..|-+...++...-..=|+||.++ ...|..|++++...+.+|.+.......+-........++..-....+.. .
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et-~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~ 1986 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDT-EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLD 1986 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666667778888887 7788888888888877777765554333222221111111111111111 1
Q ss_pred hHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHH---HHhhhH
Q 007027 383 ESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE---QQSMLY 459 (621)
Q Consensus 383 Eel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~e---qQ~mky 459 (621)
.+...+..+...|+..|..+.=+ .--.+++..+|.+|..++.+|+.+.+...+-+. +....|
T Consensus 1987 ~~~~ei~~~k~~~e~dL~~A~Pa---------------~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 1987 VRNKEIAVQKVKAYADLEKAEPT---------------GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333333333332222 011234555666666665555554433332222 111123
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHH
Q 007027 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 514 (621)
Q Consensus 460 sei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksL 514 (621)
++... =.+.|+.++...+.|.+.|+.=+.+|+..+--=.+.+..+...++.|
T Consensus 2052 ~~~~~---ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2052 ATLIR---ETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 32221 12333455666666666666666666666665555555555555544
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.60 E-value=0.7 Score=44.99 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=39.5
Q ss_pred hhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007027 485 SVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (621)
Q Consensus 485 ~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (621)
..-.+|.-|=-.|-+|+-..+...+.+.++|..+++|-++..=-=-|+. + -..|..+++||.+++.-++.+.
T Consensus 106 ~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~------E--Ke~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 106 QLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD------E--KESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHCCC--------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555667788888888999999999999988877654433333 2 2255677788888888777776
Q ss_pred hHH
Q 007027 565 KLL 567 (621)
Q Consensus 565 K~L 567 (621)
..+
T Consensus 178 ~v~ 180 (189)
T 2v71_A 178 AVR 180 (189)
T ss_dssp ---
T ss_pred HHH
Confidence 654
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.16 E-value=1.4 Score=42.22 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhh
Q 007027 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (621)
Q Consensus 423 deEK~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~R 482 (621)
-++|+..||+||.|++..|..-.-.+.-...+|...--.++..+..+-||++++...+.-
T Consensus 4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~ 63 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63 (168)
T ss_dssp ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988887776666666777767778888888888888887655543
No 23
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.97 E-value=6.2 Score=38.41 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhh----hHHHHHhHHHHHHHHHhHHHhhhhhH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRA 392 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEe----sE~EVaaLerrIelLKEel~rAEsRa 392 (621)
.+..++..++..|+++++.-..-.+.+|. ++...+.|..++.-|+.++.....++
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666554443333222 23334444444444444444443333
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.52 E-value=2.5 Score=38.15 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=71.3
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHH
Q 007027 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTK 537 (621)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak 537 (621)
+++.+..=+..|+.++.+.+.+..-+|.+..-|...-..|...|..-+..+...+....+...++... ++++..|-+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rle 93 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666667777777776666777765555555566666666666666666666555555443 777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 538 LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 538 ~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
-.++....|..+...|++++..+++....+
T Consensus 94 eeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 94 DEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888887777877777777665443
No 25
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.46 E-value=3.5 Score=37.16 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELere 412 (621)
.....|..+...|..+......+|+.-...+..++.....|..+-..|+..+...++|+..-+..+..|+..-..+..+
T Consensus 34 ~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e 112 (129)
T 2fxo_A 34 ARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDE 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666677777777777777666666666666666655556666666655555555444444444433333333
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.44 E-value=5.2 Score=38.37 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=80.6
Q ss_pred ccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------HH
Q 007027 297 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QE 369 (621)
Q Consensus 297 L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes-------E~ 369 (621)
+|..-+.|+|--.||+-.-..+. +--+.-+.-++.|++++..|+..-+..+-.+....+.++.= ..
T Consensus 18 ~n~kLk~EsE~~~rlkK~~tEl~-------k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 18 ANDLLRTESDTAVRLRKSHTEMS-------KSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555544433332 22222356788999999999999888888887777777552 55
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhh
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~L 416 (621)
.+++|+.+|..|..++.+.-.|...+......|.+--..++.+...+
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999888888877777666655433
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.37 E-value=4.2 Score=48.17 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=33.3
Q ss_pred hhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHH
Q 007027 365 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQ 440 (621)
Q Consensus 365 EesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~Q 440 (621)
+..+.+...++..+..|++++...+...+.+....+.+.+.++++...+. +|+..|++.....+.|
T Consensus 973 e~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~----------~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE----------QLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555555554443222 4555555555444433
No 28
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=91.09 E-value=0.18 Score=42.98 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
.+++||+|++.|+..|++|+.+.++||+|-
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLDqTL 71 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLDQTL 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999999999999999999999884
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.00 E-value=2.1 Score=45.57 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH----hHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHH
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVa----aLerrIelLKEel~rAEsRa~tAesKle~LseTNdEL 409 (621)
.++..+..++..++.++...+..++....++++...... .+.+..+.+++.+.+.++|.+..+.++....+...+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 345556666666666666666666666665555433222 4555567777777788888888888888888888888
Q ss_pred HHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHH
Q 007027 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 443 (621)
Q Consensus 410 erelk~Lesrs~~deEK~~~LE~QLKEa~~QLqh 443 (621)
++++..++. ++..+|+++++.+.+++.
T Consensus 536 ~~~~~~~~~-------~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 536 QKETEDLEQ-------ENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHh-------hhHHHHHHHhhhhhHHHH
Confidence 888776666 366777777776644433
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.35 E-value=10 Score=44.85 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=13.3
Q ss_pred ccccchhhh---hhHHHHHHHHH
Q 007027 52 DLAYSSEKL---VNLHVLLMYLL 71 (621)
Q Consensus 52 ~~a~~SEKl---~NL~~l~M~~~ 71 (621)
=+-|+-||| +|-|+|.++-.
T Consensus 453 cINy~NEkLQq~F~~~~f~~Eqe 475 (1080)
T 2dfs_A 453 CINYANEKLQQQFNMHVFKLEQE 475 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHhhHHHHH
Confidence 345778887 56677776544
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.75 E-value=17 Score=38.71 Aligned_cols=74 Identities=8% Similarity=0.102 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhh---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAAS---AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~t---lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
.+.+++..+..+...++..+.+..+..... .+.++....-+++-...-...+.++..++...+.+.+.+.++++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666665555555444443333222 33333444444444444445555555556666666666555544
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.62 E-value=12 Score=31.90 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 392 AESAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 392 a~tAesKle~LseTNdELerelk~Lesr 419 (621)
+..|+.+|..|.....+|+..++.|..|
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888888777554
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.35 E-value=46 Score=31.45 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhh
Q 007027 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (621)
Q Consensus 370 EVaaLerrIelLKEel~rAEsRa~tAesKle~Lse 404 (621)
++..|...+..=...-..||.+....+..++.||.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344445555555555555543
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.70 E-value=11 Score=34.60 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=31.8
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhh
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Le 417 (621)
+.++..+...|.+||.++..+..++..+..+++.+.+-+.+|.+...-|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777777777777777777666666666666666555443
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.77 E-value=16 Score=32.67 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=12.1
Q ss_pred hHHHHHhHHHHHHHHHhHHH
Q 007027 367 SQEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 367 sE~EVaaLerrIelLKEel~ 386 (621)
+..+|..|.|.|+.|.-++.
T Consensus 34 ~k~Ei~elrr~iq~L~~el~ 53 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEID 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666655553
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=71.40 E-value=17 Score=32.65 Aligned_cols=57 Identities=18% Similarity=0.308 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHhHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAE 389 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAE 389 (621)
-+.+..|++-+...|.||-.+.-.|.+|....|.- .+.|++++..|.+||..+..+-
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988777652 6689999999999998886553
No 37
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.50 E-value=47 Score=29.92 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHH
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~ 386 (621)
...|+.++..||..-|+++-+--.+.++++..++....-=-++..|+.+|.
T Consensus 51 ~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 51 KEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666655555555444444555555554
No 38
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.89 E-value=8.2 Score=32.09 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 007027 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (621)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~ 566 (621)
-.+-++|..|+++++.+..-.+.....|..|.+.|..+|..+..+++.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999998888765
No 39
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=69.71 E-value=11 Score=34.12 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=48.7
Q ss_pred cccccchhH-HHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHH
Q 007027 298 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (621)
Q Consensus 298 ~as~~REse-l~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLer 376 (621)
+|+..-+.| +..-|+.-++.|. ..++.+....-.-+..|...|..||-+|+++.-+.+.|....+....++..+.+
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk---~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLK---AQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444434444 5555666555554 344444443457888999999999999999998888887776655555555433
Q ss_pred HHHHH---HhHHHhhhhhHHHHHHHHHH
Q 007027 377 FIESL---KESLYGAESRAESAEEKVTQ 401 (621)
Q Consensus 377 rIelL---KEel~rAEsRa~tAesKle~ 401 (621)
....- ...+..+|.|++.++.+...
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~K 110 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSK 110 (120)
T ss_dssp TCC-------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221 23345556666655555443
No 40
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.11 E-value=11 Score=35.16 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=7.9
Q ss_pred HHhhhhhHHHHHHHHHHHh
Q 007027 385 LYGAESRAESAEEKVTQLT 403 (621)
Q Consensus 385 l~rAEsRa~tAesKle~Ls 403 (621)
-..||++....+..++.||
T Consensus 62 R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.48 E-value=51 Score=28.03 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
...++.|.++++.-+..|....+.++.++..++.....+
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999888888888888888877766553
No 42
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=67.71 E-value=28 Score=36.23 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhH
Q 007027 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (621)
Q Consensus 376 rrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaE 449 (621)
++..+|..+|.+++-.+..++.+-.-...|..-|-.-|..-.+++ ..|+..||+++++.+.+|+.+.+-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666555555566555555444333332 25889999999998888888776554
No 43
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=65.56 E-value=27 Score=29.81 Aligned_cols=55 Identities=15% Similarity=0.296 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHhHHHhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGA 388 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rA 388 (621)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999888777552 668999999999999887654
No 44
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.77 E-value=28 Score=31.27 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHhHHH
Q 007027 368 QEQLNEMDNFIESLKESLY 386 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~ 386 (621)
..+|..|.|.|+.|.-++.
T Consensus 37 k~Ei~elrr~iq~L~~el~ 55 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQ 55 (131)
T ss_dssp ----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655543
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=63.13 E-value=35 Score=31.33 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhh
Q 007027 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (621)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsR 391 (621)
|...+..+++++-.+...|..++.+++....++..+.+.|..|..++-+.|..
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555566666666666666666666666666666665543
No 46
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=61.24 E-value=8 Score=34.74 Aligned_cols=74 Identities=23% Similarity=0.303 Sum_probs=48.8
Q ss_pred HhhhhHHHHhhhhHHhhhccccccchhHHHHHHhhHHHHHhhh--hHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 007027 279 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK--DMVLQKLESTKNSEVLTMKEKVKSLEEQLKES 353 (621)
Q Consensus 279 L~g~skel~gkLq~~qf~L~as~~REsel~sKL~~~~eqL~~k--~~~lekl~~s~esEv~sLqkKvksLE~qLdes 353 (621)
|.||-+-+.+-|+-+|-.++.-...=..-+-||++++.+-+.- +.....+.. +.++|..|+.|+..|..++.+.
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666554444444567999999888864 333333443 5788999999988888877654
No 47
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=60.59 E-value=32 Score=30.40 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHhHHHhhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (621)
+.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577889999999999999999999888777552 66899999999999988866543
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.65 E-value=1.5e+02 Score=30.70 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhHhHHHHHhhhHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHH
Q 007027 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (621)
Q Consensus 426 K~~~LE~QLKEa~~QLqhA~asaEas~eqQ~mkysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~ 505 (621)
....|.+||-+++.-+.++.+-|..... +|- ++.+-|-.|++.++.|.+..|..+. +|+.+|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 460 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATANH-------TVM---ALMASLDAEKAQGQKKVEELEGEIT-------TLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcch-------hHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 4677888888888777777765555443 222 3334445788878877777777777 6666666
Q ss_pred HHHhhHHHH
Q 007027 506 FMRDKIKIL 514 (621)
Q Consensus 506 ~l~~~lksL 514 (621)
..+..++.+
T Consensus 461 ~~~~~~~~~ 469 (471)
T 3mq9_A 461 DASAEVERL 469 (471)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666555543
No 49
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=58.72 E-value=82 Score=28.46 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=49.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHH
Q 007027 468 LIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (621)
Q Consensus 468 vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~ 547 (621)
.|.+|+..|.-||+-+..--..|- +|.+|+.-.+..+...+.--.++.--+.-|-.+=..|- +++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~id-------elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadRE--------kl~ 89 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLV 89 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHH--------HHH
Confidence 366777777777766666666676 77777777666555444444445444555544444443 345
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007027 548 TQRELIQKQVYSLTSEN 564 (621)
Q Consensus 548 ~ErdrLe~ql~s~keen 564 (621)
.+.++|..|+..+...|
T Consensus 90 ~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 90 EKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 56666666666655544
No 50
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=58.55 E-value=12 Score=32.06 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=50.0
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
|+.|.+++..-|..+.+|..|++.++++..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~----~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999998876433222 23455553 3578899999999888877766
No 51
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.83 E-value=90 Score=26.11 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007027 529 AKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (621)
Q Consensus 529 lKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (621)
...++.|.++++.-+..|....+.++.++..++...
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999888888888888888877766543
No 52
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=54.39 E-value=4.9 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~akl 364 (621)
+++.++.+|++.|+.+++.+++++..++..+
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566778888888888888887777776554
No 53
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=54.05 E-value=14 Score=33.52 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=51.2
Q ss_pred HHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhh
Q 007027 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 447 (621)
Q Consensus 378 IelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~as 447 (621)
|+.|.+++..-|..+.+|..|+..++++..---.+ ...+..|. .=+..|+..|.+.+-||.-+++.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~----~~Vs~lq~KiaeLKrqLAd~va~ 91 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDRE----GVAVSIQAKIDELKRQLADRIAT 91 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999998876433222 34556653 35789999999999888877763
No 54
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=53.73 E-value=1.2e+02 Score=27.12 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
..|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~v 113 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDV 113 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888887765544433222222222 34666777777777777766665555544444444433
No 55
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=53.52 E-value=15 Score=32.48 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=50.7
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHH--hhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhh
Q 007027 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE--INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (621)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseTNdELere--lk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~a 446 (621)
-|+.|.+++..-|..+..|..|+..++.+..---.+ ...+..|. .=+..|+..|.+.+.||..+++
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~----~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRR----AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 378899999999999999999999998876433222 33456653 3578899999999888877776
No 56
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.01 E-value=33 Score=37.82 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 007027 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~ 491 (621)
+..+++.-...|+.++..|....+.+..+..
T Consensus 427 ~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~ 457 (575)
T 2i1j_A 427 EVELKDSETRRLQEEVEDARRKQDEAAAALL 457 (575)
T ss_dssp ---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666655444444443
No 57
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=52.93 E-value=53 Score=29.79 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh------------HHHHHhHHHHHHHHHhHHHhhhh
Q 007027 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------QEQLNEMDNFIESLKESLYGAES 390 (621)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEes------------E~EVaaLerrIelLKEel~rAEs 390 (621)
.+..|++-+...|.||-.+.-.|..|....+.- .+.|++++..|..||..+..+-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999998887776552 66889999999999988765543
No 58
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=51.20 E-value=16 Score=40.21 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=0.4
Q ss_pred HHHHHHhHHHhhhhhHH
Q 007027 377 FIESLKESLYGAESRAE 393 (621)
Q Consensus 377 rIelLKEel~rAEsRa~ 393 (621)
++.+|.++..+||.-+.
T Consensus 364 ~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 364 MILRLEEQLRQLQAAKE 380 (575)
T ss_dssp C----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.92 E-value=1.3e+02 Score=26.65 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
..|+..+...++.|+-+++....+-......+.+. ..++..++..|..|+..+.++....+.-...+..|-..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888876655433333333222 44677777777777777777665555444444444433
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.30 E-value=61 Score=27.82 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=44.2
Q ss_pred hHHHHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHH
Q 007027 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 516 (621)
Q Consensus 458 kysei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~ 516 (621)
..++|.-+.--|++||.+-......++.+-+....|...|-.|.+|......|+.+|=.
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777888888876666555565566666778888999999999888887743
No 61
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.50 E-value=1.8e+02 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 007027 339 MKEKVKSLEEQLKESEIRLQNAN 361 (621)
Q Consensus 339 LqkKvksLE~qLdes~eQL~~A~ 361 (621)
.+.....|+.+|..+++.|..+.
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~e 45 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVE 45 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777666665554
No 62
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.41 E-value=1.7e+02 Score=26.36 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=36.3
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~ 358 (621)
.+|+.+|..+++.|..+...+++|... ..-...-.+.|.-|+.|.+-|..--.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478899999999999988888888764 22222222467777777777766543
No 63
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.99 E-value=71 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHhHHHhhhhhHHH
Q 007027 368 QEQLNEMDNFIESLKESLYGAESRAES 394 (621)
Q Consensus 368 E~EVaaLerrIelLKEel~rAEsRa~t 394 (621)
.++|.++..-|+-.|++..||=.|+.+
T Consensus 24 ssdV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 24 SNDANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 335556666677888888888888764
No 64
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.13 E-value=2.4e+02 Score=28.29 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=43.0
Q ss_pred HHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 007027 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (621)
Q Consensus 99 DlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~ 178 (621)
.+|++|||.=|.....+++.|..+|...+..+..... +..-.++..+|++...|.|.+
T Consensus 156 ~ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~----------------------~~~l~~l~~lrr~l~~lrr~l 213 (339)
T 4ev6_A 156 FLLYHILNEITRSYSRILMNLEDELEELEDKLLAGYD----------------------REVMEKILGLRKTLVYFHKSL 213 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC----------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----------------------hhHHHHHHHHHHHHHHHHHHh
Confidence 4788999988888888888888888777776654332 122345667777777887777
Q ss_pred hh
Q 007027 179 SY 180 (621)
Q Consensus 179 ~~ 180 (621)
.+
T Consensus 214 ~~ 215 (339)
T 4ev6_A 214 IA 215 (339)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 65
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.06 E-value=55 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
-+-+++.|.-|-+++|..|...+=+-+.+|..+....+.|.+++....
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778888888888888888888888888888888888888777654
No 66
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.61 E-value=2e+02 Score=25.78 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=8.1
Q ss_pred cchhHHHHHHhhHH
Q 007027 302 QRESELKSKLGDFI 315 (621)
Q Consensus 302 ~REsel~sKL~~~~ 315 (621)
+|+.+|++|.....
T Consensus 3 k~~rdL~~~~~~L~ 16 (111)
T 2v66_B 3 QRNRDLQADNQRLK 16 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 45666666665444
No 67
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=40.22 E-value=1.8e+02 Score=25.60 Aligned_cols=88 Identities=24% Similarity=0.249 Sum_probs=50.9
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 007027 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLAT 548 (621)
Q Consensus 469 IEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ 548 (621)
|++|+..+.-||.-+-+-...|- +|.+++.-.+..+...+.--.++.--+.-|-.+=..|- +++.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id-------~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadRE--------kl~~ 68 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELID-------KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHARE--------KLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHh
Confidence 44556666656554444444555 66666666666565555555555555666655555553 4566
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q 007027 549 QRELIQKQVYSLTSENKLLVEKL 571 (621)
Q Consensus 549 ErdrLe~ql~s~keenK~L~ekl 571 (621)
+.++|..++..+...|..|+..+
T Consensus 69 eKe~L~~ql~~lq~q~~~L~~~~ 91 (94)
T 3jsv_C 69 KKEYLQEQLEQLQREFNKLKVGC 91 (94)
T ss_dssp TTSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 77888888888887777766543
No 68
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=40.07 E-value=70 Score=27.70 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=30.6
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 007027 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (621)
Q Consensus 329 ~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (621)
|++++..+..|+.+..+||+++.+++.+... +++.++..|..|+..+.++....+.-...+..|
T Consensus 7 ~~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~----------e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 70 (95)
T 3mov_A 7 HSSRENLYFQGQKESRACLERIQELEDLLAK----------EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQL 70 (95)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888888888888776543 334455555555555555444333333333333
No 69
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.51 E-value=46 Score=32.57 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHhhhhHHHHHhhcC----------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 314 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 358 (621)
Q Consensus 314 ~~eqL~~k~~~lekl~~s----------~esEv~sLqkKvksLE~qLdes~eQL~ 358 (621)
..+||+..+..+.+|..- ++.|+..|++++.+++.+.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345555555555544331 345555555555555555555554443
No 70
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.06 E-value=1.8e+02 Score=24.50 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 537 KLMMEMVMQLATQRELIQKQVYSLT 561 (621)
Q Consensus 537 k~aE~lV~KL~~ErdrLe~ql~s~k 561 (621)
.-+++.+.+|......|+.+|.-+.
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666665443
No 71
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=38.06 E-value=4.6e+02 Score=29.20 Aligned_cols=265 Identities=8% Similarity=0.074 Sum_probs=127.7
Q ss_pred hHHhHHHHHHHHHhhhhccccee------ccccchhhHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhc
Q 007027 108 ELREVERLLDTIHVEIVNVHHKI------SSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYF 181 (621)
Q Consensus 108 Ev~ele~~~~~lq~~i~~~~~~~------~s~~~~~~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~ 181 (621)
|+..++..+.+|+..+....... +.+..+...+-.+ +....+.+..|.....+...+-....+|++....+
T Consensus 306 e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L---~~~~~~r~~~l~~~~~R~~~Le~l~~~F~~~~~~~ 382 (863)
T 1sjj_A 306 EKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGL---EQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIH 382 (863)
T ss_dssp HHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHH---HHHHTTTHHHHHHHHEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677776665433321 1222223322222 33333333433322222222222457788887777
Q ss_pred ccCCCcccccccccCCcccccccccccchHHHHHHHHHHHHhhhhhhhhhHhhHHHhhhHHHHhhhhhhhhHHHHHHHHH
Q 007027 182 IHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEA 261 (621)
Q Consensus 182 ~~~~~~~~~~~~e~~~~~~~~~~~~mqt~eqqR~iLrMLekSla~eldLEkkL~es~~~eeeLk~KL~~~eqe~~~lEE~ 261 (621)
..|-.+....+.. ..+++ ..+.++..+..-...++..|+. .+..+.......++|...=|+-. ..+..-
T Consensus 383 ~~Wl~~~e~~l~~-~~~g~----~dl~~v~~ll~kh~~f~~el~~---~~~~v~~l~~~~~~L~~~~~~~~---~~I~~~ 451 (863)
T 1sjj_A 383 ESWTDGKEAMLQQ-KDYET----ATLSEIKALLKKHEAFESDLAA---HQDRVEQIAAIAQELNELDYYDS---PSVNAR 451 (863)
T ss_dssp HHHHHHHHHHHHS-CTTTS----SCHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTCCTTH---HHHHHH
T ss_pred HHHHHHHHHHhhc-ccccC----CCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCcccH---HHHHHH
Confidence 7776655544443 22322 1233444444445666666654 34555555566666654333322 233444
Q ss_pred HHHHHHHHHhccchHHHHhhhhHHHHhhhh---HH--hhhccccccchhHHHHHHhhHHHHHhhhhHHHHHhhcCChhHH
Q 007027 262 AEVVWGRFLEAENSAEVLMGISKEMLGRFQ---IV--QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEV 336 (621)
Q Consensus 262 ~~~~~er~~EAENa~EvL~g~skel~gkLq---~~--qf~L~as~~REsel~sKL~~~~eqL~~k~~~lekl~~s~esEv 336 (621)
...+..||-.=-.+++-=+..+...+..++ .. ||.-.+ .++.+=+...++.|...+. ....+++
T Consensus 452 ~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a-----~~~~~Wl~~~e~~l~~~~~------g~dl~~v 520 (863)
T 1sjj_A 452 CQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRA-----APFNNWMEGAMEDLQDTFI------VHTIEEI 520 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TTTHHHHHHHHHHHHCCCC------CSSSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhcchHh------hccHHHH
Confidence 444444543322222222222222222222 11 333222 2344555555555543221 1245779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhh---------------HHHHHhHHHHHHHHHhHHHhhhhhHHHHHH
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNAN---ACFQTS---------------QEQLNEMDNFIESLKESLYGAESRAESAEE 397 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~---aklEes---------------E~EVaaLerrIelLKEel~rAEsRa~tAes 397 (621)
..|.+|...++.++......+.... ..+... ...+..+..+-+.|.+-+..=..|++.+..
T Consensus 521 e~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~ 599 (863)
T 1sjj_A 521 QGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHA 599 (863)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765543322 121110 113456666666666666666666666653
No 72
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=37.73 E-value=1.9e+02 Score=29.34 Aligned_cols=108 Identities=16% Similarity=0.230 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchhh
Q 007027 59 KLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLRE 138 (621)
Q Consensus 59 Kl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~~ 138 (621)
|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.+++..|.+=+..++.++..... ..+.+.
T Consensus 176 k~TLLh~lv~~~~~~~p~l~~f~~eL~-----~v~~Askvs~--~~l~~~l~~l~~~~~~~~~~l~~~~~----~~~~~d 244 (340)
T 1v9d_A 176 KMTLLHFLAELCENDHPEVLKFPDELA-----HVEKASRVSA--ENLQKSLDQMKKQIADVERDVQNFPA----ATDEKD 244 (340)
T ss_dssp TSBHHHHHHHHHHHSCCTTSSGGGGCT-----THHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHTCCC----CSSSSC
T ss_pred CccHHHHHHHHHHHhCchhccchhHHH-----hHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHhccc----ccchhH
Confidence 444578888888777777766665433 3555554442 33567888888888888887765422 122345
Q ss_pred HHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 139 VFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 139 ~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
.|... |..-+.+++..+..++.+...+. ..|..+..+|.
T Consensus 245 ~f~~~--m~~Fl~~a~~~~~~l~~~~~~~~---~~~~~l~~yfg 283 (340)
T 1v9d_A 245 KFVEK--MTSFVKDAQEQYNKLRMMHSNME---TLYKELGDYFV 283 (340)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhC
Confidence 56532 47888899988888888877775 45777777775
No 73
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=37.50 E-value=95 Score=28.43 Aligned_cols=72 Identities=24% Similarity=0.283 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhhhHHHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhh
Q 007027 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (621)
Q Consensus 374 LerrIelLKEel~rAEsRa~tAesKle~LseTNdELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asa 448 (621)
-.+...+|+..+-+|+.-+..++..-.--..|..-|..-|+..+.++ -.++.-|+..++..+.+|+.|-+-+
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777666666666555555555555555555544443 2456666666666666665554433
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=37.14 E-value=1.5e+02 Score=25.33 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHhhhhhcC
Q 007027 391 RAESAEEKVTQLTDTNLELSEEINFLKGN 419 (621)
Q Consensus 391 Ra~tAesKle~LseTNdELerelk~Lesr 419 (621)
|+++=..|.--|++.|..|+.++..+.++
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555555555443
No 75
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.48 E-value=1.4e+02 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (621)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ke 562 (621)
.+.-++|..|..+++.+.+..+.--..|..++..|..++..++.
T Consensus 14 ~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 14 SRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888888888888888888887776653
No 76
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.21 E-value=1.5e+02 Score=26.29 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007027 540 MEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 540 E~lV~KL~~ErdrLe~ql~s~ 560 (621)
+..+.+|+.|+++|...+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888777654
No 77
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.97 E-value=1.5e+02 Score=22.79 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhH
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (621)
..++.++...+..++.....+..++.++....+.+......|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544555555555555555544444454444445444443
No 78
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=35.10 E-value=3.6e+02 Score=29.40 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=14.5
Q ss_pred HHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 377 FIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 377 rIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
.|+.||..+...+.+..+|......+...
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555555544444444333
No 79
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.98 E-value=1e+02 Score=30.15 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=27.0
Q ss_pred hhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHHHHHHhH
Q 007027 478 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (621)
Q Consensus 478 rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~sl~kA~q 523 (621)
.+++|.+.++.=+.-|.-.|.-|+++|......++.|..++..+..
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888878888888888888877777777766655443
No 80
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=34.77 E-value=1.4e+02 Score=25.67 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 007027 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 365 (621)
Q Consensus 334 sEv~sLqkKvksLE~qLdes~eQL~~A~aklE 365 (621)
-|+..|.-||..+|++--.|+-.|..+++.+-
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 57888999999999999999988888875543
No 81
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.69 E-value=1.2e+02 Score=25.32 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHH
Q 007027 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (621)
Q Consensus 335 Ev~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~ 393 (621)
|+..|-.++..||.++...+.++.+...-. .--..++.+..++..++.++..+..|=.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWe 80 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWE 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776543211 1235677777777777777777777754
No 82
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=33.27 E-value=1.7e+02 Score=25.37 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L 567 (621)
+.++-|..+++.+..||.-+...+...--|..++-.=-.-.=.+-.-|+..+..||..+-.+|+.|..+
T Consensus 16 ~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 16 QFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888887776654333334455544455555677789999999999999999999875
No 83
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.94 E-value=3.2e+02 Score=25.79 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007027 341 EKVKSLEEQLKESEIRLQN 359 (621)
Q Consensus 341 kKvksLE~qLdes~eQL~~ 359 (621)
.+...||+.|-.+...|..
T Consensus 13 n~qs~LeD~L~~~R~el~~ 31 (154)
T 2ocy_A 13 DKQSHLEEQLNKSLKTIAS 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHH
Confidence 3444445554444444443
No 84
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.84 E-value=2.3e+02 Score=24.02 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcC
Q 007027 546 LATQRELIQKQVYSLTSENKLLVEKLQYSG 575 (621)
Q Consensus 546 L~~ErdrLe~ql~s~keenK~L~ekld~t~ 575 (621)
=.+-.+||.|+|-++.-+|+.|.++|...+
T Consensus 44 k~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 44 KNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 346789999999999999999999998765
No 85
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=32.68 E-value=1.5e+02 Score=26.20 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=48.3
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHhHHHH
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN-------ACFQTSQEQLNEMDNF 377 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~A~-------aklEesE~EVaaLerr 377 (621)
.+|..+|..+++-|..+...+++|... ..-.....+.+.-|..|.+-|..--..=. ..-+....+++.+.+.
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 378999999999999999999988875 33333444667777777777766543222 2222224455555555
Q ss_pred HHHHHh
Q 007027 378 IESLKE 383 (621)
Q Consensus 378 IelLKE 383 (621)
+..|+.
T Consensus 84 ~~~L~~ 89 (94)
T 3jsv_C 84 FNKLKV 89 (94)
T ss_dssp TC----
T ss_pred HHHHHH
Confidence 555544
No 86
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.43 E-value=15 Score=27.10 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 369 EQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 369 ~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
+.+.++.++|+-|+.+.+.|+.|+..+..++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999998876554
No 87
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=30.45 E-value=2e+02 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred Hhhhhhhhhhhhhhhhhhhh
Q 007027 472 LKSKVSKAESKTESVEEQCI 491 (621)
Q Consensus 472 Lk~Kl~rAE~RaE~aEsK~~ 491 (621)
++.++..+|.||...|.+..
T Consensus 90 ~q~~~~e~E~kAqa~Eerf~ 109 (120)
T 3i00_A 90 AQRSLSEIERKAQANEQRYS 109 (120)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655555554
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.00 E-value=2.1e+02 Score=23.95 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=20.1
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 326 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (621)
Q Consensus 326 ekl~~s~esEv~sLqkKvksLE~qLdes~eQL~~ 359 (621)
++|... +.+...|.++|+.+|.++..+...=..
T Consensus 7 ~kLq~~-E~~N~~Le~~v~~le~~Le~s~~~q~~ 39 (72)
T 3cve_A 7 MKLQEV-EIRNKDLEGQLSEMEQRLEKSQSEQDA 39 (72)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 466667777777777777776654333
No 89
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=29.84 E-value=3.5e+02 Score=25.36 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhh
Q 007027 331 TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (621)
Q Consensus 331 s~esEv~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rA 388 (621)
.++..+..|+.-+.++-+++++.++.|.-+..-+.+-+..|--|..|...-.-++.+-
T Consensus 8 ~K~~~ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~L 65 (167)
T 4gkw_A 8 DKEDEVADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKL 65 (167)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHH
Confidence 3677888999999999999999999988887777777777777777777766666554
No 90
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.65 E-value=1.4e+02 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=28.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 007027 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (621)
Q Consensus 527 ~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keenK~L~ekld 572 (621)
.|+-+++.|++-.+ .....|+..|+++.-+|.+|-+.++
T Consensus 3 aYl~eLE~r~k~le-------~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLE-------NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 47778887766544 4455567778888888988877665
No 91
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=29.32 E-value=1.6e+02 Score=22.81 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEe 384 (621)
++.+||..||.-++..+..+..--+.. .+-..-|..||..|+..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhc
Confidence 467888889988888888877664443 34444566777776653
No 92
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.68 E-value=62 Score=30.09 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=8.4
Q ss_pred HHHHHhHHHhhhhhHHHHHHH
Q 007027 378 IESLKESLYGAESRAESAEEK 398 (621)
Q Consensus 378 IelLKEel~rAEsRa~tAesK 398 (621)
+..|..++.+...+-..|+..
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~ 68 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEE 68 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 93
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=28.43 E-value=2.6e+02 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=30.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 528 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (621)
Q Consensus 528 tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~ 560 (621)
-|+-+-.|.++.|..+.++...+..|+.|+.++
T Consensus 46 ~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 46 AALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 388889999999999999999999999999874
No 94
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.40 E-value=95 Score=32.27 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhh
Q 007027 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE 389 (621)
Q Consensus 340 qkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAE 389 (621)
++|++.+.+++..++..+..+...+...+..+..++.+|+.|+.+|..-+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444444344444455555555555444333
No 95
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.92 E-value=5.9e+02 Score=27.37 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=27.9
Q ss_pred HHHhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 007027 461 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (621)
Q Consensus 461 ei~dme~vIEdLk~Kl~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE 515 (621)
.|+.+..+|+++..|..|-|.-.+..=.=|.+=-.-++++.=.+..|.+-.|.|+
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~ 189 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLE 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHH
Confidence 4555556666666665555554443333455333333444444566655555543
No 96
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.39 E-value=3.7e+02 Score=30.07 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=15.7
Q ss_pred hhhhhhhhHhhHHHhhhHHHH
Q 007027 224 LARELDLEKKISELNQNEEQL 244 (621)
Q Consensus 224 la~eldLEkkL~es~~~eeeL 244 (621)
+--|.||-+.|.+.++..+++
T Consensus 56 dkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhcCcHHHHHHHHHHHHHHH
Confidence 345778888888888777777
No 97
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=26.10 E-value=2.1e+02 Score=29.78 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccc--cchhhHH
Q 007027 63 LHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSC--KHLREVF 140 (621)
Q Consensus 63 L~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~--~~~~~~f 140 (621)
||.++..+.....++-.+..+- .+|++|--.|+ .-|.++|++|.+=+..++.++.... ++.+ .|.+..|
T Consensus 261 Lh~l~~~v~~~~p~l~~f~~eL-----~~v~~Aakv~~--~~l~~d~~~L~~~l~~v~~~l~~~~--~s~~~~~~~~d~f 331 (411)
T 1ux5_A 261 LNYVEKIVRLNYPSFNDFLSEL-----EPVLDVVKVSI--EQLVNDCKDFSQSIVNVERSVEIGN--LSDSSKFHPLDKV 331 (411)
T ss_dssp HHHHHHHHHHHCGGGGGHHHHT-----HHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHHHHST--TTCTTSSCTTCCH
T ss_pred HHHHHHHHHHhCcccccccchh-----hhHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHhcc--CCcccccCcccHH
Confidence 7777777777766666554432 34555544332 3456889999999999998886422 2221 1334445
Q ss_pred HHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 141 TIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 141 ~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
.. .|..-+..++..+...++++..+.. .|..+..+|.
T Consensus 332 ~~--~~~~fl~~a~~~~~~l~~~~~~~~~---~~~~l~~yfg 368 (411)
T 1ux5_A 332 LI--KTLPVLPEARKKGDLLEDEVKLTIM---EFESLMHTYG 368 (411)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 53 2367788888888888887776654 6777777775
No 98
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.89 E-value=72 Score=25.06 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=25.6
Q ss_pred hhhhhhhhhhhccchhhHHHHHHHHHhhHHHHHHH
Q 007027 483 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (621)
Q Consensus 483 aE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE~s 517 (621)
.+..|.++..|+..|.+|..++..++..+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888888888888877777543
No 99
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.76 E-value=3e+02 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=9.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHH
Q 007027 499 ELKNKQSFMRDKIKILESSLNR 520 (621)
Q Consensus 499 ELeEEL~~l~~~lksLE~sl~k 520 (621)
+|......++++++.++..+..
T Consensus 21 ~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 21 EITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 100
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.74 E-value=2.4e+02 Score=31.55 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 007027 336 VLTMKEKVKSLEEQLKESEIRLQNANAC 363 (621)
Q Consensus 336 v~sLqkKvksLE~qLdes~eQL~~A~ak 363 (621)
+..+..|++.||.+++ .|+...+..
T Consensus 140 Ledq~~kIQRLEvDId---iqirsCKgs 164 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID---IKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcccc
Confidence 3456668888888776 344444444
No 101
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.73 E-value=1.9e+02 Score=22.68 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007027 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (621)
Q Consensus 519 ~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~k 561 (621)
.+.-++|-.+..+++.+.+..+.-...|..++..|..++..++
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777888777777777666667777766666665554
No 102
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.32 E-value=3.4e+02 Score=23.25 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHH
Q 007027 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (621)
Q Consensus 337 ~sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKl 399 (621)
..+-+.+..|.-++++..++-.......++..+....+.+.|+-|+++...=++|+..-..|.
T Consensus 16 q~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 16 QQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555554444444444555566677777777777777777766655553
No 103
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.29 E-value=1.7e+02 Score=22.82 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=25.4
Q ss_pred HHHHhHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007027 518 LNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSEN 564 (621)
Q Consensus 518 l~kA~q~k~~tlKeae~Rak~aE~lV~KL~~ErdrLe~ql~s~keen 564 (621)
....-.+|-.|+.+++.+ |.+|..+-..|..++..+...+
T Consensus 13 A~rSR~RKk~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 13 ARESRRKKKEYVKSLENR-------VAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888887777 4556666666666666555443
No 104
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.90 E-value=65 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007027 541 EMVMQLATQRELIQKQVY 558 (621)
Q Consensus 541 ~lV~KL~~ErdrLe~ql~ 558 (621)
-.|++|++.+|||++-+.
T Consensus 13 ~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 13 AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 468899999999998653
No 105
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.84 E-value=3.3e+02 Score=22.92 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=10.7
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHh
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKL 328 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl 328 (621)
..+..++.....++..-+.+++.|
T Consensus 23 ~~l~~q~~~l~~~~~e~~~~~~eL 46 (117)
T 2zqm_A 23 QLVVQQKQKVQLELTEAKKALDEI 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 106
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.00 E-value=2.3e+02 Score=24.38 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=23.3
Q ss_pred hhhhhhhhhhhhhhhhhhccchhhHHHHHHHHHhhHHHHH
Q 007027 476 VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (621)
Q Consensus 476 l~rAE~RaE~aEsK~~~Lse~N~ELeEEL~~l~~~lksLE 515 (621)
.--+++++.-+|.++- +|..|+..++.+++.|.
T Consensus 40 ni~~eskL~eae~rn~-------eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 40 NQNFASQLREAEARNR-------DLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3344455555666666 99999999998888764
No 107
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.70 E-value=2.5e+02 Score=21.96 Aligned_cols=54 Identities=15% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHH
Q 007027 349 QLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 402 (621)
Q Consensus 349 qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~rAEsRa~tAesKle~L 402 (621)
.|+.....+...+.-.-..-.|+..-+..|..+..+++++..|+..+..++..+
T Consensus 10 ~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 10 GLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444434433333344567888889999999999999999999998887654
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.65 E-value=2.5e+02 Score=23.58 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHHHh
Q 007027 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (621)
Q Consensus 346 LE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel~r 387 (621)
|+..|..-.++|..-..-.++.+.++...+..|..|..++++
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333333333333333444444444455555555443
No 109
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.20 E-value=3.4e+02 Score=22.51 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=10.9
Q ss_pred hHHHHHHhhHHHHHhhhhHHHHHh
Q 007027 305 SELKSKLGDFIEQLKAKDMVLQKL 328 (621)
Q Consensus 305 sel~sKL~~~~eqL~~k~~~lekl 328 (621)
..+..++.....++..-+.+++.|
T Consensus 18 ~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 18 QAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444544444544444444433
No 110
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=21.89 E-value=84 Score=23.44 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007027 544 MQLATQRELIQKQVYSLTSENKLLVE 569 (621)
Q Consensus 544 ~KL~~ErdrLe~ql~s~keenK~L~e 569 (621)
-||-++++.=..+|.+++++|..|.+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 47888888889999999999988753
No 111
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.88 E-value=4.1e+02 Score=23.40 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=7.4
Q ss_pred HHHHHHHHhhhhhhhhhh
Q 007027 465 METLIEDLKSKVSKAESK 482 (621)
Q Consensus 465 me~vIEdLk~Kl~rAE~R 482 (621)
...=+..|+.++.+...+
T Consensus 24 ~~~e~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333333444444444443
No 112
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.41 E-value=1.4e+02 Score=31.57 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=7.7
Q ss_pred ccchhcchHHHHhhhh
Q 007027 602 AGATVKTSEDAVSLMK 617 (621)
Q Consensus 602 ~~~~~~~~~~~~~~~~ 617 (621)
+-..+.+.+++..+|.
T Consensus 238 ~~~~v~s~~e~~~ll~ 253 (403)
T 4etp_A 238 TSVKLESEEMVEIILK 253 (403)
T ss_dssp CCEECCCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHH
Confidence 3344455555555543
No 113
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.73 E-value=2.7e+02 Score=23.64 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhhHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH-------HHHHHhHhhhhhhHHHHHhHHHHHHHH
Q 007027 319 KAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESE-------IRLQNANACFQTSQEQLNEMDNFIESL 381 (621)
Q Consensus 319 ~~k~~~lekl~~s~esEv~sLqkKvksLE~qLdes~-------eQL~~A~aklEesE~EVaaLerrIelL 381 (621)
..++...++|... +.....|.++|..+|.++..+. ..+..+...++-.--++.++..-+..|
T Consensus 6 ~e~e~~~~klq~~-E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 6 AEREETQQKVQDL-ETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp ----CTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
No 114
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.64 E-value=4.4e+02 Score=23.23 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----HH---HHHhHHHHHHHHHhHHHhhhhhHHHHHHHHHHHhhh
Q 007027 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS----QE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 405 (621)
Q Consensus 333 esEv~sLqkKvksLE~qLdes~eQL~~A~aklEes----E~---EVaaLerrIelLKEel~rAEsRa~tAesKle~LseT 405 (621)
+.++..|+.++..+-.+-.....++.++...++.. +. .-.++++-|..|+..++.+--.-.. |..-
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~d-------LE~~ 91 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLD-------LERK 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHH-------HHHH
Confidence 45666777776665555444444444444444332 22 2335666666666666544322222 3333
Q ss_pred hHHHHHHhhhhhc
Q 007027 406 NLELSEEINFLKG 418 (621)
Q Consensus 406 NdELerelk~Les 418 (621)
..-|..++.||+.
T Consensus 92 iesL~eEl~FLKk 104 (119)
T 3ol1_A 92 VESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666654
No 115
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=20.55 E-value=2.3e+02 Score=30.29 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=74.8
Q ss_pred hhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHHhhhhcccceeccccchh
Q 007027 58 EKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLR 137 (621)
Q Consensus 58 EKl~NL~~l~M~~~~~~~~~E~~~~~~~~i~~~s~eka~efDlL~gildsEv~ele~~~~~lq~~i~~~~~~~~s~~~~~ 137 (621)
=|..=||.++..+.....++-.+..+-. +|++|--.|+ .-|.++|++|.+=+..++.+|...... ++.+ +
T Consensus 257 ~k~TLLhylv~~v~~~~p~l~~f~~eL~-----~v~~Askv~~--~~l~~~~~~L~~~l~~v~~~l~~~~~~--~~~~-~ 326 (483)
T 2j1d_G 257 KNITLLHYLITIVENKYPSVLNLNEELR-----DIPQAAKVNM--TELDKEISTLRSGLKAVETELEYQKSQ--PPQP-G 326 (483)
T ss_dssp TTCBHHHHHHHHHHHHCGGGGGHHHHTT-----THHHHHTCCH--HHHHHHHHHHHHHHHHHHHHHHHHHTS--CCCT-T
T ss_pred CCccHHHHHHHHHHHhCchhhchHHHHh-----hHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCc-h
Confidence 3555688999988888777776654433 3455555443 446788999999999998888765332 1222 3
Q ss_pred hHHHHHHHhHhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcc
Q 007027 138 EVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFI 182 (621)
Q Consensus 138 ~~f~~~~~~~~kL~~~~~sLkq~~e~~~ei~~qsa~f~r~~~~~~ 182 (621)
..|... |..=+..+...+...+.++..+.. .|..+..+|.
T Consensus 327 d~f~~~--m~~Fl~~a~~~~~~L~~~~~~~~~---~~~~l~~yFG 366 (483)
T 2j1d_G 327 DKFVSV--VSQFITVASFSFSDVEDLLAEAKD---LFTKAVKHFG 366 (483)
T ss_dssp CCHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTT
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhC
Confidence 455532 478888899999988888888765 5666666664
No 116
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.19 E-value=2.7e+02 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHhHHHHHHHHHhHH
Q 007027 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (621)
Q Consensus 338 sLqkKvksLE~qLdes~eQL~~A~aklEesE~EVaaLerrIelLKEel 385 (621)
++.+||..||.-++..+..+..--+..+.+ ..-|.+||..|+..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ss---Q~KLKqRit~LE~~~ 48 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESM---QQKLKQRLTKVEKFL 48 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 577899999999998888877765554433 334555555555543
No 117
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=20.05 E-value=4.9e+02 Score=23.51 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHhHHHhhhhhHHHHHHHHHHHhhhhH-----HHHHHhhhhhcCCCCchhhhhhHHHHHHHHHHHHHHhhhhhHhHHHH
Q 007027 380 SLKESLYGAESRAESAEEKVTQLTDTNL-----ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (621)
Q Consensus 380 lLKEel~rAEsRa~tAesKle~LseTNd-----ELerelk~Lesrs~~deEK~~~LE~QLKEa~~QLqhA~asaEas~eq 454 (621)
.+++++.++=.++......-..+..... |+..-.+.|++. +..+|-+|.+.+ .|+.+++..-.+
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~-------l~sie~dLeDLe----~sI~ivE~np~k 99 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNG-------LRSIEWDLEDLE----ETIGIVEANPGK 99 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHhCHHh
Q ss_pred HhhhHHHHHhHHHHHHHHhhhhhhhhhhh
Q 007027 455 QSMLYSAIWDMETLIEDLKSKVSKAESKT 483 (621)
Q Consensus 455 Q~mkysei~dme~vIEdLk~Kl~rAE~Ra 483 (621)
=+.--.++.+--..|.+++.++...+..+
T Consensus 100 F~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 100 FKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Done!