Query 007028
Match_columns 621
No_of_seqs 101 out of 125
Neff 2.6
Searched_HMMs 46136
Date Thu Mar 28 17:54:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 2E-148 5E-153 1165.0 34.7 303 32-337 23-333 (599)
2 PF04873 EIN3: Ethylene insens 100.0 5E-115 1E-119 886.8 -0.0 346 49-427 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.0 0.0011 2.4E-08 61.5 5.4 82 177-274 16-103 (126)
4 PF00843 Arena_nucleocap: Aren 44.4 15 0.00032 41.4 2.2 160 97-292 269-487 (533)
5 KOG4215 Hepatocyte nuclear fac 38.0 7.1 0.00015 43.0 -1.3 23 411-433 40-62 (432)
6 PHA02767 hypothetical protein; 35.4 29 0.00062 31.7 2.2 26 82-107 43-68 (101)
7 KOG3263 Nucleic acid binding p 30.5 29 0.00063 35.0 1.6 22 102-130 145-166 (196)
8 PF07440 Caerin_1: Caerin 1 pr 22.3 38 0.00082 24.4 0.5 15 249-263 3-17 (24)
9 COG2091 Sfp Phosphopantetheiny 19.9 96 0.0021 31.6 3.0 36 90-128 41-78 (223)
10 PF11831 Myb_Cef: pre-mRNA spl 19.0 3.5E+02 0.0075 27.6 6.7 68 44-111 100-175 (231)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=2.3e-148 Score=1165.03 Aligned_cols=303 Identities=63% Similarity=1.099 Sum_probs=284.3
Q ss_pred CCCcCCCCCCCcccCCHHHHHHhhhhhhHHHHHHhhhhcCCcccc--hhhccccHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 007028 32 EPEATVEDDYTDEEMDVDELERRMWKDKMRLKRLKEQSRGKEGID--MAKQRQSQEQARRKKMSRAQDGILKYMLKMMEV 109 (621)
Q Consensus 32 ~~~~~~e~~~sdeei~~~eLe~rmwkD~~~lkrlke~~~~~~~~~--~~k~~~~~eq~rrKkMsRAQdgiLkyMlKmMEv 109 (621)
..++++|+|+||||||+||||||||||||+||||||+++..+..+ ..|+++++||||||||+||||||||||||||||
T Consensus 23 ~c~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~ 102 (599)
T PLN03109 23 RCDNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEV 102 (599)
T ss_pred ccCCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999998855444 668899999999999999999999999999999
Q ss_pred HhhccceeeeccCCCccccCCCchhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCCCCCCcchhhhcchhhhhhH
Q 007028 110 CKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINAIGPTPHTLQELQDTTLGSL 189 (621)
Q Consensus 110 C~aqGFVYGIipekGkPvsGaSdnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsl 189 (621)
||||||||||||||||||||||||||+|||||||||||||||||||++||++++.++.... +++|+|+||||||||||
T Consensus 103 c~a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgsl 180 (599)
T PLN03109 103 CKARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSL 180 (599)
T ss_pred HhhcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988765443 89999999999999999
Q ss_pred HHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHH
Q 007028 190 LSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKL 269 (621)
Q Consensus 190 lSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLtAVIKHmsPd~~kir~l 269 (621)
||||||||+|||||||||||+||||||||+|+||+++|+|++++ |||||||||||||||||||||||||||||+|||+|
T Consensus 181 lsalmqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~ 259 (599)
T PLN03109 181 LSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRH 259 (599)
T ss_pred HHHHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999999999999999999999999999999999999999865 99999999999999999999999999999999999
Q ss_pred HhhhcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCc------ccCCCCCCCCccccCCCCccccCCCCCCC
Q 007028 270 VRQSKCLQDKMTAKESATWLAIINQEEALARELYPESCT------VLSSSAGSGSLVINDCNEYDVEGAEDEPN 337 (621)
Q Consensus 270 VrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~eYDVdg~~~~~~ 337 (621)
||||||||||||||||+||++||+|||+|+|+...++.. |.++.++....++|+++||||||+||...
T Consensus 260 vr~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~g 333 (599)
T PLN03109 260 VRQSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPG 333 (599)
T ss_pred HHhchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCC
Confidence 999999999999999999999999999999998777642 44556677788899999999999998764
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=4.5e-115 Score=886.84 Aligned_cols=346 Identities=45% Similarity=0.780 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhHHHHHHhhhhcC----Ccc-cchhhccccHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccceeeeccCC
Q 007028 49 DELERRMWKDKMRLKRLKEQSRG----KEG-IDMAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 123 (621)
Q Consensus 49 ~eLe~rmwkD~~~lkrlke~~~~----~~~-~~~~k~~~~~eq~rrKkMsRAQdgiLkyMlKmMEvC~aqGFVYGIipek 123 (621)
|||++|||||+|+|+||++++.. ++. ....|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 79999999999999999998755 222 2334567889999999999999999999999999999999999999999
Q ss_pred CccccCCCchhHHHhhhhccccccchhhhhhhcccCCCCCCCCCCCC-CCCCcchhhhcchhhhhhHHHHhhhcCCCCcc
Q 007028 124 GKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNSVPGKNEGINA-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQR 202 (621)
Q Consensus 124 GkPvsGaSdnlR~WWKekV~FdrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~L~~LqDtTLgsllSaLmqhC~PpQR 202 (621)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++|||||||||||||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999888776644 56889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhhhhhhccCcCHHHHHHHHhhhcccccchhH
Q 007028 203 RFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTA 282 (621)
Q Consensus 203 r~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLtAVIKHmsPd~~kir~lVrqSkcLQdKmTa 282 (621)
||||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCcccCCCCCCCCccccCCCCccccCCCCCCCccccccCccCccccccchhhhccCC
Q 007028 283 KESATWLAIINQEEALARELYPESCTVLSSSAGSGSLVINDCNEYDVEGAEDEPNFDVQECKPQNLISSSLGMERMRERL 362 (621)
Q Consensus 283 kEs~~W~~vl~~Ee~l~~~~~~~~~~~~~~~~~~~~~~~~~~~eYDVdg~~~~~~~~v~~~kp~~~~~~n~~~~~~~~~~ 362 (621)
+||.||+++++|||++++.+|++ +.+...++..++++...+|||+|.++.....|+.....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~---s~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~~---------------- 301 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAH---SRSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSAT---------------- 301 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCC---cchhhccCCCccccccchhhccCccccccccccccccc----------------
Confidence 99999999999999999999988 22555667777788888999999886543322221110
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCcccC--CcccccCCCCCCCCCCCCCCCCcccccCccc
Q 007028 363 PNQQPPYAIKGEVVSNFDFVRKRKPSNDLSMKMD--QHIYTCEYLQCPYSDPRLGYRDRTSRDNHQL 427 (621)
Q Consensus 363 ~~~~~~~~~k~e~~~n~~f~~KRk~~~~~~~~~~--~k~ytc~~~qCP~s~~~~GF~Drn~R~nHq~ 427 (621)
.+..++.||+...+...... ..+|+|+++|||+|+..+||.|+|.|++|+|
T Consensus 302 --------------~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 302 --------------NGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp -------------------------------------------------------------------
T ss_pred --------------cCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 13445666662223222333 3489999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.01 E-value=0.0011 Score=61.52 Aligned_cols=82 Identities=24% Similarity=0.634 Sum_probs=65.7
Q ss_pred hhhhcchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhh
Q 007028 177 TLQELQDTTLGSLLSALMQHCDP-PQRRFPLEKG--VSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLT 253 (621)
Q Consensus 177 ~L~~LqDtTLgsllSaLmqhC~P-pQRr~Plekg--~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLt 253 (621)
.+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .++|-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35567777777777777766666 5899999999 599999944 6899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHhhhc
Q 007028 254 AVIKHMSP---DIAKIRKLVRQSK 274 (621)
Q Consensus 254 AVIKHmsP---d~~kir~lVrqSk 274 (621)
.+++.+.+ ..++++.+.+.+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99998877 6677777766554
No 4
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=44.44 E-value=15 Score=41.40 Aligned_cols=160 Identities=27% Similarity=0.436 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHhhccceeeeccC----------------CCccccCCCchh--HHHhhhhccccccchhhhhhhccc
Q 007028 97 DGILKYMLKMMEVCKAQGFVYGIIPE----------------KGKPVTGASDNL--REWWKDKVRFDRNGPAAIAKYQAD 158 (621)
Q Consensus 97 dgiLkyMlKmMEvC~aqGFVYGIipe----------------kGkPvsGaSdnl--R~WWKekV~FdrngPaAiaky~~~ 158 (621)
+.|||-+|+ |=++-|-.-+..|- .|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 467777664 44555555455553 567777776666 889888899988765211
Q ss_pred CCCCCCCCCCCCCCCCcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCC----
Q 007028 159 NSVPGKNEGINAIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGA---- 234 (621)
Q Consensus 159 ~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gp---- 234 (621)
..|.. +..++.+..|.+.|-.. |...|+.-||-- ..|=.=.|-|.|++-
T Consensus 340 -~~p~~----ng~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVR----NGGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccC----CCCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 11222 22233344555555544 444555555532 234444566655431
Q ss_pred --------CCCCCCchhhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHh-----hhcccc
Q 007028 235 --------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVR-----QSKCLQ 277 (621)
Q Consensus 235 --------PPYkkPhdLkKaw-----------------KV~VLtAVIKHmsPd~-------~kir~lVr-----qSkcLQ 277 (621)
-=||+|||.|-.= .-|+++|||+|+-++. +-||+|.- .=|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999987431 2489999999999886 88999973 335555
Q ss_pred cchhHHHHHHHHHHH
Q 007028 278 DKMTAKESATWLAII 292 (621)
Q Consensus 278 dKmTakEs~~W~~vl 292 (621)
=|||+.+|......+
T Consensus 473 V~lt~eqaR~FEd~V 487 (533)
T PF00843_consen 473 VKLTSEQARKFEDQV 487 (533)
T ss_dssp ----HHHHTTTHHHH
T ss_pred eecCHHHHHHHHHHH
Confidence 689999887664433
No 5
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=37.99 E-value=7.1 Score=42.96 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=20.5
Q ss_pred CCCCCCCCcccccCccccCCCCC
Q 007028 411 DPRLGYRDRTSRDNHQLTCPYKS 433 (621)
Q Consensus 411 ~~~~GF~Drn~R~nHq~~C~yr~ 433 (621)
+.+=||--|+.|.||||+|+|..
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k 62 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNK 62 (432)
T ss_pred CcchHHHHHHHHhcceeeeeccc
Confidence 45789999999999999999973
No 6
>PHA02767 hypothetical protein; Provisional
Probab=35.41 E-value=29 Score=31.68 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=21.8
Q ss_pred ccHHHHHHhhhhhhhhhHHHHHHHHH
Q 007028 82 QSQEQARRKKMSRAQDGILKYMLKMM 107 (621)
Q Consensus 82 ~~~eq~rrKkMsRAQdgiLkyMlKmM 107 (621)
|.+=-.|.|.|..|-|.||||+||..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 34456889999999999999999864
No 7
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=30.49 E-value=29 Score=35.01 Aligned_cols=22 Identities=50% Similarity=0.806 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccceeeeccCCCccccCC
Q 007028 102 YMLKMMEVCKAQGFVYGIIPEKGKPVTGA 130 (621)
Q Consensus 102 yMlKmMEvC~aqGFVYGIipekGkPvsGa 130 (621)
-|+||| ||+ |+=--|||+|.|+
T Consensus 145 EMmk~M------Gf~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIM------GFS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHh------CcC-cccCCCCccccCc
Confidence 488888 455 6678999999886
No 8
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=22.30 E-value=38 Score=24.35 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=12.9
Q ss_pred hhhhhhhhhccCcCH
Q 007028 249 VGVLTAVIKHMSPDI 263 (621)
Q Consensus 249 V~VLtAVIKHmsPd~ 263 (621)
.+||.+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 579999999999865
No 9
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=19.89 E-value=96 Score=31.56 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=29.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhcc--ceeeeccCCCcccc
Q 007028 90 KKMSRAQDGILKYMLKMMEVCKAQG--FVYGIIPEKGKPVT 128 (621)
Q Consensus 90 KkMsRAQdgiLkyMlKmMEvC~aqG--FVYGIipekGkPvs 128 (621)
+.|-.|.+++|++.|+.|.-|..+. |.|| +.|||.=
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~~~---~~GKP~~ 78 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQISYG---ERGKPYL 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeEC---CCCCccc
Confidence 6788999999999999999998776 4444 7999953
No 10
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=19.00 E-value=3.5e+02 Score=27.57 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=35.3
Q ss_pred ccCCHHHHHHhhhhhhHHHHHHhhhhcCCcc-cchhhccccHHHHHH-------hhhhhhhhhHHHHHHHHHHHHh
Q 007028 44 EEMDVDELERRMWKDKMRLKRLKEQSRGKEG-IDMAKQRQSQEQARR-------KKMSRAQDGILKYMLKMMEVCK 111 (621)
Q Consensus 44 eei~~~eLe~rmwkD~~~lkrlke~~~~~~~-~~~~k~~~~~eq~rr-------KkMsRAQdgiLkyMlKmMEvC~ 111 (621)
-+.|..|.++|.=+-+-.-++.+-+++.+.- -+.+.........-| ....+|++=|.+-|+.||.-=.
T Consensus 100 ~eeDaad~d~r~~~~~~~~e~~e~~rRSqvvQR~LPRP~~v~~~~L~~~~~~~~~~~~~ae~lI~~Em~~Ll~~D~ 175 (231)
T PF11831_consen 100 MEEDAADRDARERAEREEEEEKELKRRSQVVQRGLPRPSEVNESILRPAENPALTELDEAEELIKQEMATLLKHDA 175 (231)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCcccHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhHh
Confidence 3668888888865443333333332222110 011111111222222 3456899999999999997533
Done!