Query 007028
Match_columns 621
No_of_seqs 101 out of 125
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 15:17:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007028.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007028hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wija_ a.140.5.1 (A:) Ethylen 100.0 4.7E-79 3.4E-83 542.4 1.7 127 174-301 1-127 (127)
2 d1atia2 d.104.1.1 (A:1-394) Gl 63.1 1.9 0.00014 43.0 3.1 43 103-147 5-59 (394)
3 d1b76a2 d.104.1.1 (A:1-394) Gl 33.3 13 0.00095 34.7 3.5 45 103-148 5-59 (331)
4 d1g5ha2 d.104.1.1 (A:41-330) T 30.1 8 0.00058 35.9 1.4 14 105-118 2-15 (290)
5 g1mso.1 g.1.1.1 (B:,A:) Insuli 22.5 17 0.0012 27.1 1.7 13 105-117 14-26 (51)
6 d2glia4 g.37.1.1 (A:198-228) F 14.6 18 0.0013 24.7 0.1 25 398-427 1-25 (31)
7 d1lnga_ d.201.1.1 (A:) SRP19 { 13.8 38 0.0028 26.8 1.9 28 105-140 33-60 (87)
8 d1bqca_ c.1.8.3 (A:) Beta-mann 11.6 78 0.0057 27.0 3.6 55 100-156 64-124 (302)
9 d1wqji1 g.1.1.1 (I:2-63) Insul 10.8 27 0.002 26.7 0.2 13 106-118 13-25 (62)
10 d1erya_ a.10.1.1 (A:) ER-11 {E 10.5 34 0.0025 23.9 0.5 9 192-200 29-37 (39)
No 1
>d1wija_ a.140.5.1 (A:) Ethylene insensitive 3 (EIN3)-like protein 3, EIL3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=4.7e-79 Score=542.42 Aligned_cols=127 Identities=76% Similarity=1.352 Sum_probs=124.1
Q ss_pred CcchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCchhhhhhhhhhhh
Q 007028 174 TPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGKEEWWPQLGLPKDQGAPPYKKPHDLKKAWKVGVLT 253 (621)
Q Consensus 174 ~~h~L~~LqDtTLgsllSaLmqhC~PpQRr~Plekg~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLt 253 (621)
+.|.|+||||||||||||||||||+|||||||||||+||||||||+|+||++||++++++ |||||||||||||||+|||
T Consensus 1 ~~~~L~~LqD~TLgsllsaLmqhC~PPQR~~Plekg~pPPWWPtG~E~WW~~lg~~~~~~-PPYkkPhdLkKawKv~vL~ 79 (127)
T d1wija_ 1 SQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMWKVGVLT 79 (127)
T ss_dssp CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCChHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred hhhhccCcCHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 007028 254 AVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARE 301 (621)
Q Consensus 254 AVIKHmsPd~~kir~lVrqSkcLQdKmTakEs~~W~~vl~~Ee~l~~~ 301 (621)
||||||||||+|||+|||||||||||||||||+||++||+|||+|+|+
T Consensus 80 aVIKHmsPd~~kir~lVr~sk~lqdkmTakEs~~W~~vl~~Ee~l~~~ 127 (127)
T d1wija_ 80 AVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQ 127 (127)
T ss_dssp HHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHhCCcHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhHHHHhcC
Confidence 999999999999999999999999999999999999999999998763
No 2
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=63.13 E-value=1.9 Score=42.98 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=29.2
Q ss_pred HHHHHHHHhhccceeeecc-CCCccccCCCc----------hh-HHHhhhhcccccc
Q 007028 103 MLKMMEVCKAQGFVYGIIP-EKGKPVTGASD----------NL-REWWKDKVRFDRN 147 (621)
Q Consensus 103 MlKmMEvC~aqGFVYGIip-ekGkPvsGaSd----------nl-R~WWKekV~Fdrn 147 (621)
|-||++.||.|||||.=-- ..| |+|.=| || +.|||.-|....|
T Consensus 5 ~e~i~~l~KRRgFv~pS~EIYGG--laG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~ 59 (394)
T d1atia2 5 LDELVALCKRRGFIFQSSEIYGG--LQGVYDYGPLGVELKNNLKQAWWRRNVYERDD 59 (394)
T ss_dssp HHHHHHHHHHTTSEEETTGGGTC--CTTCEEECHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHhcCCcccChhhccC--cccccCcCccHHHHHHHHHHHHHHHHhhccCC
Confidence 6799999999999942110 012 566655 77 4599998876443
No 3
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=33.27 E-value=13 Score=34.74 Aligned_cols=45 Identities=24% Similarity=0.574 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccceeeeccCCCccccCCCc----------hhHHHhhhhccccccc
Q 007028 103 MLKMMEVCKAQGFVYGIIPEKGKPVTGASD----------NLREWWKDKVRFDRNG 148 (621)
Q Consensus 103 MlKmMEvC~aqGFVYGIipekGkPvsGaSd----------nlR~WWKekV~Fdrng 148 (621)
|-||++.||.+||++-.- |=.-=|+|-=| ||...|++.+--++.|
T Consensus 5 ~~~~~~~~krrgf~~~s~-~iy~g~~G~y~ygP~G~~l~~~i~~~wr~~~v~~~~~ 59 (331)
T d1b76a2 5 LDELVALCKRRGFIFQSS-EIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDD 59 (331)
T ss_dssp HHHHHHHHHHTTSEEETT-GGGSCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHcCCccccc-hhcCCceeEeccCCcHHHHHHHHHHHHHHHHHhccCC
Confidence 568999999999986321 11111455544 7777777765444433
No 4
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.12 E-value=8 Score=35.94 Aligned_cols=14 Identities=21% Similarity=0.850 Sum_probs=12.6
Q ss_pred HHHHHHhhccceee
Q 007028 105 KMMEVCKAQGFVYG 118 (621)
Q Consensus 105 KmMEvC~aqGFVYG 118 (621)
||+|.||.||||+|
T Consensus 2 ~l~~l~krrgf~~~ 15 (290)
T d1g5ha2 2 ALVDLCRRRHFLSG 15 (290)
T ss_dssp HHHHHHHHTTSBCC
T ss_pred hHHHHHhcCCcccC
Confidence 68999999999965
No 5
>g1mso.1 g.1.1.1 (B:,A:) Insulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.45 E-value=17 Score=27.14 Aligned_cols=13 Identities=38% Similarity=0.927 Sum_probs=11.3
Q ss_pred HHHHHHhhcccee
Q 007028 105 KMMEVCKAQGFVY 117 (621)
Q Consensus 105 KmMEvC~aqGFVY 117 (621)
-+..||..|||.|
T Consensus 14 aL~~vCg~rGf~~ 26 (51)
T g1mso.1 14 ALYLVCGERGFFY 26 (51)
T ss_dssp HHHHHHGGGCEEE
T ss_pred HHHHHHccCCccc
Confidence 3678999999999
No 6
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.58 E-value=18 Score=24.68 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=19.1
Q ss_pred cccccCCCCCCCCCCCCCCCCcccccCccc
Q 007028 398 HIYTCEYLQCPYSDPRLGYRDRTSRDNHQL 427 (621)
Q Consensus 398 k~ytc~~~qCP~s~~~~GF~Drn~R~nHq~ 427 (621)
|.|.|++..|-- .|...+-|-.||-
T Consensus 1 kPY~C~~~gC~K-----afsNsSDraKHqn 25 (31)
T d2glia4 1 KPYMCEHEGCSK-----AFSNASDRAKHQN 25 (31)
T ss_dssp CCEECCSTTCCC-----EESSSSTTHHHHH
T ss_pred CCccccCCChhh-----hhcchhhhhhhcc
Confidence 469999999953 5777777878874
No 7
>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.78 E-value=38 Score=26.76 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHHHHHhhccceeeeccCCCccccCCCchhHHHhhh
Q 007028 105 KMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKD 140 (621)
Q Consensus 105 KmMEvC~aqGFVYGIipekGkPvsGaSdnlR~WWKe 140 (621)
-|-++|++.|+=|-+.++|.-| |.||..
T Consensus 33 eI~~a~~~lgl~~~~e~~K~yP--------r~~~~~ 60 (87)
T d1lnga_ 33 DIEKALKKLGLEPKIYRDKRYP--------RQHWEI 60 (87)
T ss_dssp HHHHHHHHTTCCCEEETTCCCG--------GGTTSC
T ss_pred HHHHHHHHcCCCeEEeeCCCCC--------chHhhC
Confidence 3668999999999999999999 789964
No 8
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]}
Probab=11.64 E-value=78 Score=27.05 Aligned_cols=55 Identities=7% Similarity=0.181 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhccceeeeccC-----C-CccccCCCchhHHHhhhhccccccchhhhhhhc
Q 007028 100 LKYMLKMMEVCKAQGFVYGIIPE-----K-GKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQ 156 (621)
Q Consensus 100 LkyMlKmMEvC~aqGFVYGIipe-----k-GkPvsGaSdnlR~WWKekV~FdrngPaAiaky~ 156 (621)
+.++-++++.|.++| +|-||.- . ...-...-+....+|++-+.-.+|-|.-|+ |+
T Consensus 64 ~~~~~~~v~~a~~~G-i~vildlh~~~~~~~~~~~~~~~~~~~~w~~ia~~~~~~p~vv~-~~ 124 (302)
T d1bqca_ 64 PSDVANVISLCKQNR-LICMLEVHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVL-IN 124 (302)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEEGGGTTTTTSTTCCCHHHHHHHHHHTHHHHTTCTTTEE-EE
T ss_pred HHHHHHHHHHHHHCC-CEEEEEecccccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEE-Ee
Confidence 455778889999999 4556522 1 111233456778889998888888775433 54
No 9
>d1wqji1 g.1.1.1 (I:2-63) Insulin-like growth factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.83 E-value=27 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.9
Q ss_pred HHHHHhhccceee
Q 007028 106 MMEVCKAQGFVYG 118 (621)
Q Consensus 106 mMEvC~aqGFVYG 118 (621)
+.-||..+||.|-
T Consensus 13 L~~VCG~rGfy~~ 25 (62)
T d1wqji1 13 LQFVCGDRGFYFN 25 (62)
T ss_dssp HHHHHGGGCBCSE
T ss_pred HHHHHccCCCCcC
Confidence 5679999999983
No 10
>d1erya_ a.10.1.1 (A:) ER-11 {Euplotes raikovi [TaxId: 5938]}
Probab=10.47 E-value=34 Score=23.86 Aligned_cols=9 Identities=56% Similarity=1.479 Sum_probs=7.9
Q ss_pred HhhhcCCCC
Q 007028 192 ALMQHCDPP 200 (621)
Q Consensus 192 aLmqhC~Pp 200 (621)
..||.|.||
T Consensus 29 tvmqncepp 37 (39)
T d1erya_ 29 TVMQNCEPP 37 (39)
T ss_dssp HHHHHSCSC
T ss_pred HHHhcCCCC
Confidence 479999998
Done!