Your job contains 1 sequence.
>007029
MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN
TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR
DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH
ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRP
SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQ
TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL
AFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVV
KICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDK
RKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNT
FKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEA
AYETKQSEIYLSNELINLAEL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007029
(621 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094533 - symbol:AT3G25430 species:3702 "Arabi... 1701 4.1e-175 1
TAIR|locus:2012100 - symbol:AHG2 "ABA-HYPERSENSITIVE GERM... 527 2.0e-61 2
UNIPROTKB|F6XU41 - symbol:PARN "Uncharacterized protein" ... 219 6.0e-23 2
ZFIN|ZDB-GENE-040426-880 - symbol:parn "poly(A)-specific ... 223 6.4e-23 2
UNIPROTKB|F1NEI8 - symbol:F1NEI8 "Uncharacterized protein... 223 1.1e-22 2
UNIPROTKB|P69341 - symbol:PARN "Poly(A)-specific ribonucl... 222 1.1e-22 3
UNIPROTKB|E2QZA0 - symbol:PARN "Uncharacterized protein" ... 211 1.7e-22 2
MGI|MGI:1921358 - symbol:Parn "poly(A)-specific ribonucle... 215 4.9e-22 3
RGD|1565449 - symbol:Parn "poly(A)-specific ribonuclease"... 212 6.6e-22 3
UNIPROTKB|O95453 - symbol:PARN "Poly(A)-specific ribonucl... 218 1.1e-21 3
UNIPROTKB|F1MX01 - symbol:PNLDC1 "Uncharacterized protein... 179 3.9e-20 2
UNIPROTKB|E9PU60 - symbol:Pnldc1 "Protein Pnldc1" species... 181 7.6e-20 2
UNIPROTKB|E2R0L8 - symbol:PNLDC1 "Uncharacterized protein... 180 1.6e-19 2
UNIPROTKB|E1BVT8 - symbol:PNLDC1 "Uncharacterized protein... 179 5.3e-19 2
UNIPROTKB|F1SB65 - symbol:PNLDC1 "Uncharacterized protein... 176 9.2e-19 2
UNIPROTKB|Q8NA58 - symbol:PNLDC1 "Poly(A)-specific ribonu... 152 2.4e-16 2
UNIPROTKB|F5H1Z4 - symbol:PARN "Poly(A)-specific ribonucl... 166 2.2e-11 1
POMBASE|SPBC29A10.09c - symbol:SPBC29A10.09c "CAF1 family... 164 7.5e-09 1
UNIPROTKB|B4DSB0 - symbol:PARN "cDNA FLJ58618, highly sim... 121 1.0e-07 3
DICTYBASE|DDB_G0275089 - symbol:DDB_G0275089 "Target of E... 112 1.3e-05 3
WB|WBGene00010734 - symbol:K10C8.1 species:6239 "Caenorha... 93 4.5e-05 2
ZFIN|ZDB-GENE-070912-533 - symbol:toe1 "target of EGR1, m... 108 6.5e-05 2
UNIPROTKB|H3BT23 - symbol:PARN "Poly(A)-specific ribonucl... 101 0.00021 1
UNIPROTKB|Q17QN2 - symbol:TOE1 "Target of EGR1 protein 1"... 98 0.00049 3
UNIPROTKB|H3BRK1 - symbol:PARN "Poly(A)-specific ribonucl... 117 0.00084 2
>TAIR|locus:2094533 [details] [associations]
symbol:AT3G25430 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0009451 "RNA modification" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0006397
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 EMBL:AB025639
GO:GO:0004535 HSSP:O95453 EMBL:AY062664 EMBL:BT008385
IPI:IPI00518969 RefSeq:NP_189170.1 UniGene:At.27268
ProteinModelPortal:Q8W4C3 SMR:Q8W4C3 PRIDE:Q8W4C3
EnsemblPlants:AT3G25430.1 GeneID:822127 KEGG:ath:AT3G25430
TAIR:At3g25430 eggNOG:NOG322908 HOGENOM:HOG000084601
InParanoid:Q8W4C3 KO:K01148 OMA:NHLMKEI PhylomeDB:Q8W4C3
ProtClustDB:CLSN2915430 Genevestigator:Q8W4C3 Uniprot:Q8W4C3
Length = 618
Score = 1701 (603.8 bits), Expect = 4.1e-175, P = 4.1e-175
Identities = 341/613 (55%), Positives = 454/613 (74%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSS PA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVTVSSS-PA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT--EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 430
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 431 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA- 549
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF + +N++
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 550 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 609
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
Query: 610 YLSNEL-INLAEL 621
SNEL IN EL
Sbjct: 606 DWSNELAINFDEL 618
>TAIR|locus:2012100 [details] [associations]
symbol:AHG2 "ABA-HYPERSENSITIVE GERMINATION 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0009451 "RNA
modification" evidence=ISS] [GO:0006970 "response to osmotic
stress" evidence=IMP] [GO:0009651 "response to salt stress"
evidence=IMP] [GO:0009737 "response to abscisic acid stimulus"
evidence=IMP] [GO:0009751 "response to salicylic acid stimulus"
evidence=IMP] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0005634
GO:GO:0005737 GO:GO:0006952 GO:GO:0006950 GO:GO:0046872
GO:GO:0006397 GO:GO:0009751 GO:GO:0003723 GO:GO:0090305
SUPFAM:SSF53098 GO:GO:0004535 EMBL:AC002304 KO:K01148 EMBL:AB194966
EMBL:AB223028 EMBL:AB223029 EMBL:AB223027 IPI:IPI00525311
IPI:IPI00846849 IPI:IPI00929965 RefSeq:NP_001077725.4
RefSeq:NP_175983.5 UniGene:At.49981 ProteinModelPortal:Q9LG26
SMR:Q9LG26 STRING:Q9LG26 PRIDE:Q9LG26 EnsemblPlants:AT1G55870.1
GeneID:842037 KEGG:ath:AT1G55870 TAIR:At1g55870 eggNOG:NOG145331
HOGENOM:HOG000078691 InParanoid:Q9LG26 OMA:GVCPFRW PhylomeDB:Q9LG26
ProtClustDB:CLSN2927348 Genevestigator:Q9LG26 GermOnline:AT1G55870
Uniprot:Q9LG26
Length = 689
Score = 527 (190.6 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 117/391 (29%), Positives = 218/391 (55%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
T T +P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD
Sbjct: 26 TSTAASATAAFPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDR 85
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTC 134
+ YLK K +AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F C
Sbjct: 86 YDVRYLKVKDSAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLC 145
Query: 135 QTSYLTAMAKEGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALS 191
QT+ + +AK FDFNTCI++GISYLS E +E++ +++M +D + ++ +
Sbjct: 146 QTTSMDFLAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVR 205
Query: 192 VADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTID 245
+AD +F R+ + W++ + + +I G Q RP++++
Sbjct: 206 LADVLFAARMEKLLNEWRSGLLHGGNAS----SEFPRISNGSNQSMETVFHHMRPALSLK 261
Query: 246 VCSERQVQLVLKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+ Q++++ +L + F D LV + K ++ + V T SD DK+ L +E +
Sbjct: 262 GFTSHQLRVLNSVLRKHFGD-LVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAKDERK 319
Query: 305 E-QNKRVR---GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
++++ GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+
Sbjct: 320 RLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINS 379
Query: 361 AFPQVIDVNYLLKDIGPV--KKMTNISATIA 389
FP ++D LL ++ P+ ++M S +++
Sbjct: 380 HFPYIVDTKILL-NVNPMLHQRMKKSSTSLS 409
Score = 119 (46.9 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 61/251 (24%), Positives = 111/251 (44%)
Query: 389 AYLKNRFFAPIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDF 446
++L+ R +E++ +N N G H G++ +F + C+ L DDF
Sbjct: 428 SFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDF 487
Query: 447 LASA-INRYANIFYSLPGSSQEPTNEEIR-GWTN-DKRKVS---CEDVVFLWGFRERISA 500
+ + +Y N Y L + + ++R G +N D +VS E++V +W F ++ A
Sbjct: 488 AQNEKLEKYINRLY-LSWTRGDII--DLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA 544
Query: 501 GILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGP 553
+K + + A +V VD S V+F L F K + S +V P
Sbjct: 545 RGIKECICKAFGS-ASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHP 603
Query: 554 LREMVSDG-LKAAGYETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQ 606
L +++ G AA YE Y+ +CSS + E +D + +T + C +E E
Sbjct: 604 LSKILEGGNTGAADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTV 663
Query: 607 SEIYLSNELIN 617
+ + +++LI+
Sbjct: 664 TVTHKASDLID 674
>UNIPROTKB|F6XU41 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 CTD:5073 GeneTree:ENSGT00530000063673
OMA:LEQTDSC Ensembl:ENSCAFT00000029839 EMBL:AAEX03004504
EMBL:AAEX03004505 RefSeq:XP_536966.2 GeneID:479839 KEGG:cfa:479839
Uniprot:F6XU41
Length = 638
Score = 219 (82.2 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 56/213 (26%), Positives = 104/213 (48%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--F 197
FDFN +GI YL+ +E ++ ++ A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNHEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIV 230
I++V ++++ + ++ E RK++
Sbjct: 181 IDQVVEKIENLLQSEESKNLDLEPCTGFQRKLI 213
Score = 127 (49.8 bits), Expect = 6.0e-23, Sum P(2) = 6.0e-23
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF VI I+ S K ++ HN L D
Sbjct: 237 RYIVISKVDEEERKRREQQKLAKEQEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 296 TVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 349
>ZFIN|ZDB-GENE-040426-880 [details] [associations]
symbol:parn "poly(A)-specific ribonuclease
(deadenylation nuclease)" species:7955 "Danio rerio" [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 ZFIN:ZDB-GENE-040426-880 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 KO:K01148 eggNOG:NOG145331 CTD:5073
HOGENOM:HOG000007285 HOVERGEN:HBG053512 EMBL:AY398393 EMBL:BC050496
IPI:IPI00501510 IPI:IPI00554410 RefSeq:NP_957382.1 UniGene:Dr.78689
ProteinModelPortal:Q7ZU92 SMR:Q7ZU92 STRING:Q7ZU92 PRIDE:Q7ZU92
GeneID:791461 KEGG:dre:791461 NextBio:20930638 ArrayExpress:Q7ZU92
Uniprot:Q7ZU92
Length = 660
Score = 223 (83.6 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 64/213 (30%), Positives = 100/213 (46%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ + P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPKPFSRTS-PDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKV----RMG--NPMAVDHATKSSSSPALSVADTV--FI 198
FDFN GI YL++ +E ++ R G N T S + +V + FI
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLREQYEERRGQMNGAGPVSYTPPSGTGVCNVPEDQREFI 180
Query: 199 ERVRSRVKHW-KNACTDSDIKTEALVTSLRKIV 230
V +V+ KN TD + E RK++
Sbjct: 181 RSVEEKVEALLKN--TDQTLDLEPCTGFQRKLI 211
Score = 123 (48.4 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 40/129 (31%), Positives = 62/129 (48%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R + S +D++ +RE Q + EQ N V GF VI IS S K +V HN L D
Sbjct: 235 RFIQISKVDDEERRRREQQKQQREQEELNDAV-GFSRVIRAISKSGKLVVGHNMLLDVMH 293
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM---TNISATIAYLKNRF 395
+F PLP +++F FP+++D L+ P K++ T+++ L+ +
Sbjct: 294 TIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-LMASTQPFKEIIHNTSLAELHKQLRQKP 352
Query: 396 FAPIEMEIP 404
F P E P
Sbjct: 353 FRPPTTECP 361
>UNIPROTKB|F1NEI8 [details] [associations]
symbol:F1NEI8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IEA] [GO:0019901 "protein kinase binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0004535 GO:GO:0000289 GeneTree:ENSGT00530000063673
OMA:LEQTDSC EMBL:AADN02023913 IPI:IPI00576818
Ensembl:ENSGALT00000004886 Uniprot:F1NEI8
Length = 631
Score = 223 (83.6 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 47/143 (32%), Positives = 78/143 (54%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++ ++NF ++LS++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EVIRSNFKDNLSKVYEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKP-FNRSSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN +GI YL++ +E ++
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLR 143
Score = 120 (47.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 38/128 (29%), Positives = 65/128 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF V+ I+ S K ++ HN L D
Sbjct: 237 RYIVISKVDEEERKRREQQKQAKEQEELNDAV-GFSRVVHAIANSGKLVIGHNMLLDVMH 295
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF--- 395
+F PLP +++EF FP+++D L+ P K + N + ++A L+ R
Sbjct: 296 TIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKEV 353
Query: 396 -FAPIEME 402
F+P ++E
Sbjct: 354 PFSPPKVE 361
>UNIPROTKB|P69341 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 GO:GO:0005634 GO:GO:0005737 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 EMBL:BC150015 IPI:IPI00730593
RefSeq:NP_001094588.1 UniGene:Bt.15863 ProteinModelPortal:P69341
SMR:P69341 STRING:P69341 PRIDE:P69341 Ensembl:ENSBTAT00000024087
GeneID:524155 KEGG:bta:524155 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 InParanoid:A6QQW2
OMA:LEQTDSC OrthoDB:EOG4JHCFF NextBio:20873902 Uniprot:P69341
Length = 638
Score = 222 (83.2 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 57/213 (26%), Positives = 104/213 (48%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVADTV--F 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ D F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIV 230
I++V +++ + + ++ E RK++
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLI 213
Score = 126 (49.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF VI I+ S K ++ HN L D
Sbjct: 237 RYIVISKVDEEERKRREQQKHAKEQEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 296 TVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 349
Score = 37 (18.1 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 537 LSNTFKNVMNSKAVSG-PLREMVSDGLKAAGYETY 570
L T N ++ G P + S+ L AGY+ Y
Sbjct: 350 LKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAY 384
>UNIPROTKB|E2QZA0 [details] [associations]
symbol:PARN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0046872
Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402
GO:GO:0004535 Ensembl:ENSCAFT00000029839 Uniprot:E2QZA0
Length = 496
Score = 211 (79.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 56/215 (26%), Positives = 102/215 (47%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSFSSPWHRVST--FDTPETAYLKAKF 86
+I ++NF +L ++ I +DF A+ G P T FDTPE Y K K
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSELGISDGPSVTALTNGFDTPEERYQKLKK 61
Query: 87 AAERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C FK SK I +NF++FP+ P F CQ+S + +A
Sbjct: 62 HSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLAS 120
Query: 145 EGFDFNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL+ +E ++ ++ A+ + + ++S +++ +
Sbjct: 121 QGFDFNKVFRNGIPYLNHEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQK 180
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIV 230
FI++V ++++ + ++ E RK++
Sbjct: 181 KFIDQVVEKIENLLQSEESKNLDLEPCTGFQRKLI 215
Score = 127 (49.8 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF VI I+ S K ++ HN L D
Sbjct: 239 RYIVISKVDEEERKRREQQKLAKEQEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMH 297
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 298 TVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 351
>MGI|MGI:1921358 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease (deadenylation
nuclease)" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISO]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006402 "mRNA catabolic process" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019901 "protein
kinase binding" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001374 InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF01424 Pfam:PF04857 Pfam:PF08675 PROSITE:PS51061
MGI:MGI:1921358 GO:GO:0005737 GO:GO:0005730 GO:GO:0000184
GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0004535 GO:GO:0000289 KO:K01148
eggNOG:NOG145331 CTD:5073 GeneTree:ENSGT00530000063673
HOGENOM:HOG000007285 HOVERGEN:HBG053512 OrthoDB:EOG4JHCFF
ChiTaRS:PARN EMBL:AK004572 EMBL:AK045181 EMBL:BC021899
IPI:IPI00311534 RefSeq:NP_083037.1 UniGene:Mm.182350 PDB:1UG8
PDB:1WHV PDB:2ROK PDB:3D45 PDBsum:1UG8 PDBsum:1WHV PDBsum:2ROK
PDBsum:3D45 ProteinModelPortal:Q8VDG3 SMR:Q8VDG3 DIP:DIP-48330N
STRING:Q8VDG3 PhosphoSite:Q8VDG3 PaxDb:Q8VDG3 PRIDE:Q8VDG3
Ensembl:ENSMUST00000058884 GeneID:74108 KEGG:mmu:74108
InParanoid:Q8VDG3 EvolutionaryTrace:Q8VDG3 NextBio:339800
Bgee:Q8VDG3 Genevestigator:Q8VDG3 GermOnline:ENSMUSG00000022685
Uniprot:Q8VDG3
Length = 624
Score = 215 (80.7 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 55/206 (26%), Positives = 98/206 (47%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSSSPALSVADTV-FIERVRSR 204
FDFN GI YL++ +E ++ + + + A + P D FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIV 230
++ + + ++ + RK++
Sbjct: 181 IEDFLQSEEKRSLELDPCTGFQRKLI 206
Score = 126 (49.4 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE + + EQ N V GF VI I+ S K +V HN L D
Sbjct: 230 RHIVISKVDEEERKRREQEKYTKEQEELNDAV-GFSRVIHAIANSGKLVVGHNMLLDVMH 288
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 289 TIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 342
Score = 38 (18.4 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 553 PLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHN-CLS 598
P + S+ L AGY+ Y +GL ++A+ L L+ C+S
Sbjct: 360 PSYDTASEQLHEAGYDAY----ITGLCFISMANYLGSLLSPPKMCVS 402
>RGD|1565449 [details] [associations]
symbol:Parn "poly(A)-specific ribonuclease" species:10116
"Rattus norvegicus" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
InterPro:IPR012677 InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857
Pfam:PF08675 PROSITE:PS51061 RGD:1565449 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004535 KO:K01148
CTD:5073 EMBL:HQ123458 RefSeq:NP_001257344.1 UniGene:Rn.98642
GeneID:360464 KEGG:rno:360464 Uniprot:G3CM75
Length = 624
Score = 212 (79.7 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 53/182 (29%), Positives = 89/182 (48%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHANSKHVTKSFNFYVFPKP-FSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSSSPALSVADTV-FIERVRSR 204
FDFN GI YL++ +E ++ + + + A + P D FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALTKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VK 206
++
Sbjct: 181 IE 182
Score = 127 (49.8 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE + + EQ N V GF VI I+ S K +V HN L D
Sbjct: 230 RHIVISKVDEEERKRREQEKYAKEQEELNDAV-GFSRVIHAIANSGKLVVGHNMLLDVMH 288
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 289 TIHQFYCPLPVDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 342
Score = 39 (18.8 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 553 PLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLAS-HNCLS 598
P + S+ L AGY+ Y +GL ++A+ L L+ C+S
Sbjct: 360 PSYDTASEQLHEAGYDAY----ITGLCFISMANYLGSLLSPPKTCVS 402
>UNIPROTKB|O95453 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IPI] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0004518
"nuclease activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0007292
"female gamete generation" evidence=TAS] [GO:0009451 "RNA
modification" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001374
InterPro:IPR006941 InterPro:IPR012337 InterPro:IPR012677
InterPro:IPR014789 Pfam:PF01424 Pfam:PF04857 Pfam:PF08675
PROSITE:PS51061 PDB:2A1R GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
GO:GO:0000184 GO:GO:0000166 GO:GO:0046872 Gene3D:3.30.70.330
EMBL:CH471112 GO:GO:0003730 SUPFAM:SSF53098 GO:GO:0007292
GO:GO:0004535 GO:GO:0000289 GO:GO:0009451 DNASU:2987
PharmGKB:PA29072 BRENDA:3.1.13.4 EMBL:AC009167 KO:K01148
eggNOG:NOG145331 CTD:5073 HOGENOM:HOG000007285 HOVERGEN:HBG053512
OMA:LEQTDSC EMBL:AJ005698 EMBL:AK293189 EMBL:AK301648 EMBL:AK315020
EMBL:AC092291 EMBL:BC050029 IPI:IPI00294744 RefSeq:NP_001127949.1
RefSeq:NP_001229921.1 RefSeq:NP_002573.1 UniGene:Hs.253197 PDB:2A1S
PDB:3CTR PDBsum:2A1R PDBsum:2A1S PDBsum:3CTR
ProteinModelPortal:O95453 SMR:O95453 DIP:DIP-31124N IntAct:O95453
STRING:O95453 PhosphoSite:O95453 SWISS-2DPAGE:O95453 PaxDb:O95453
PRIDE:O95453 DNASU:5073 Ensembl:ENST00000341484
Ensembl:ENST00000420015 Ensembl:ENST00000437198 GeneID:5073
KEGG:hsa:5073 UCSC:uc010uzc.2 GeneCards:GC16M014529 HGNC:HGNC:8609
HPA:CAB011673 HPA:HPA006314 HPA:HPA012010 MIM:604212
neXtProt:NX_O95453 PharmGKB:PA32949 InParanoid:O95453 ChiTaRS:PARN
EvolutionaryTrace:O95453 NextBio:19548 ArrayExpress:O95453
Bgee:O95453 CleanEx:HS_PARN Genevestigator:O95453
GermOnline:ENSG00000140694 Uniprot:O95453
Length = 639
Score = 218 (81.8 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 48/143 (33%), Positives = 75/143 (52%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN +GI YL++ +E ++
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLR 143
Score = 121 (47.7 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF VI I+ S K ++ HN L D
Sbjct: 237 RYIVISKVDEEERKRREQQKHAKEQEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMH 295
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP +++EF FP+++D L+ P K + N + ++A L+ R
Sbjct: 296 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 349
Score = 37 (18.1 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 537 LSNTFKNVMNSKAVSG-PLREMVSDGLKAAGYETY 570
L T N ++ G P + S+ L AGY+ Y
Sbjct: 350 LKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAY 384
>UNIPROTKB|F1MX01 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00530000063673 OMA:SCDRESC EMBL:DAAA02027371
EMBL:DAAA02027372 IPI:IPI01001609 Ensembl:ENSBTAT00000020180
Uniprot:F1MX01
Length = 531
Score = 179 (68.1 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 44/146 (30%), Positives = 78/146 (53%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSIEGESNKYVAHSCNFFLFPTT---FGVLDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGN 174
+ +GI Y++E QE +K + GN
Sbjct: 124 KFLKNGIPYMNEEQEKKIKHNILTGN 149
Score = 140 (54.3 bits), Expect = 3.9e-20, Sum P(2) = 3.9e-20
Identities = 42/126 (33%), Positives = 61/126 (48%)
Query: 251 QVQLVL-KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
+VQLVL K L D VL + K TQ R L ++ D++ +E
Sbjct: 193 EVQLVLRKALPDIWTVLRDQGVIVKKVSTQH-RWYLETTSCDRESCWKEKILLS------ 245
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
RGF ++ ++KPLV HN + D +H KF PLP + +EF ++ FP +ID
Sbjct: 246 ARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLIDTK 305
Query: 370 YLLKDI 375
+ KDI
Sbjct: 306 NVTKDI 311
>UNIPROTKB|E9PU60 [details] [associations]
symbol:Pnldc1 "Protein Pnldc1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 IPI:IPI00365411
Ensembl:ENSRNOT00000060412 Uniprot:E9PU60
Length = 531
Score = 181 (68.8 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 44/146 (30%), Positives = 79/146 (54%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSVEGESNKYVAHSCNFFLFPTT---FGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGN 174
+ +GI Y++E QE +K + GN
Sbjct: 124 KFLKNGIPYMNEEQEKKIKHSILRGN 149
Score = 135 (52.6 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP +ID
Sbjct: 247 RGFSVFFQMLVKAQKPLVGHNMMTDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKN 306
Query: 371 LLKDIGPVKKMTNIS 385
+ KDI + +S
Sbjct: 307 VTKDIWKELRFPRVS 321
>UNIPROTKB|E2R0L8 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 CTD:154197 OMA:SCDRESC
EMBL:AAEX03000318 RefSeq:XP_541182.3 Ensembl:ENSCAFT00000001145
GeneID:484065 KEGG:cfa:484065 Uniprot:E2R0L8
Length = 531
Score = 180 (68.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 44/146 (30%), Positives = 78/146 (53%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRHSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSIEGESNKYVAHSCNFFLFPTT---FGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGN 174
+ +GI Y++E QE +K + GN
Sbjct: 124 KFLKNGIPYMNEEQEKKIKHNILTGN 149
Score = 133 (51.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 41/126 (32%), Positives = 60/126 (47%)
Query: 251 QVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
+VQLVL+ L D VL I K Q R L ++ D++ +E
Sbjct: 193 EVQLVLRQALPDIWTVLRDQGIIVKKVSKQH-RWYLENTSCDRESCWKEKILLS------ 245
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP +ID
Sbjct: 246 ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPILIDTK 305
Query: 370 YLLKDI 375
+ KDI
Sbjct: 306 NVTKDI 311
>UNIPROTKB|E1BVT8 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00530000063673 OMA:SCDRESC
EMBL:AADN02035516 IPI:IPI00600799 Ensembl:ENSGALT00000018991
Uniprot:E1BVT8
Length = 529
Score = 179 (68.1 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 44/144 (30%), Positives = 77/144 (53%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSS-PWH-RVSTFDTPETAYLKAKFAAERFQI 93
+F L +++ + + F+ + ++ TG S+ P + + S FD+P Y K + + +RF I
Sbjct: 7 DFARCLPCLQDRVGRAAFLGLDMEFTGLHSAFPQNNQPSLFDSPAERYQKVRQSVQRFTI 66
Query: 94 LQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
Q + F + S K + + YNF LFP +G+ T TS + ++ GFD+N
Sbjct: 67 TQLGLAIFSEENSNKYVVHSYNFFLFPST---LGVTDAELTLSTSSIQFLSHYGFDYNKF 123
Query: 153 IYDGISYLSEAQESTVKVRM--GN 174
+ DGI Y++E QE+ + R+ GN
Sbjct: 124 LKDGIPYMNELQENILSQRLLEGN 147
Score = 129 (50.5 bits), Expect = 5.3e-19, Sum P(2) = 5.3e-19
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
RGF + +I ++KPLV HN L D +H KF PLP + EF ++ FP +ID
Sbjct: 244 RGFTNLFQIIVRAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLFPVLIDTKT 303
Query: 371 LLKDI 375
+ K I
Sbjct: 304 VTKSI 308
>UNIPROTKB|F1SB65 [details] [associations]
symbol:PNLDC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 GO:GO:0005634 GO:GO:0003676 SUPFAM:SSF53098
GeneTree:ENSGT00530000063673 CTD:154197 OMA:SCDRESC EMBL:CU855864
RefSeq:XP_001926376.2 UniGene:Ssc.85453 Ensembl:ENSSSCT00000004474
GeneID:100152694 KEGG:ssc:100152694 Uniprot:F1SB65
Length = 531
Score = 176 (67.0 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 43/146 (29%), Positives = 78/146 (53%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSIEGESNKYVAHSCNFFLFPTT---FGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGN 174
+ +GI Y++E QE ++ + GN
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHNILTGN 149
Score = 130 (50.8 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
RGF ++ +QKPLV HN + D +H KF PLP + +F ++ FP +ID
Sbjct: 247 RGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILIDTKN 306
Query: 371 LLKDI 375
+ KD+
Sbjct: 307 VTKDV 311
>UNIPROTKB|Q8NA58 [details] [associations]
symbol:PNLDC1 "Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0016021 GO:GO:0005634 EMBL:CH471051 GO:GO:0003676
SUPFAM:SSF53098 HSSP:O95453 eggNOG:NOG145331 EMBL:AK093139
EMBL:AK097559 EMBL:AL139045 EMBL:BC112246 IPI:IPI00167911
IPI:IPI00797928 RefSeq:NP_775787.1 UniGene:Hs.349077
ProteinModelPortal:Q8NA58 PhosphoSite:Q8NA58 DMDM:160419239
PaxDb:Q8NA58 PRIDE:Q8NA58 Ensembl:ENST00000275275
Ensembl:ENST00000392167 GeneID:154197 KEGG:hsa:154197
UCSC:uc003qsx.1 UCSC:uc003qsy.1 CTD:154197 GeneCards:GC06P160221
HGNC:HGNC:21185 HPA:HPA052026 neXtProt:NX_Q8NA58
PharmGKB:PA134892245 HOGENOM:HOG000115590 HOVERGEN:HBG101204
OMA:SCDRESC OrthoDB:EOG40P46K PhylomeDB:Q8NA58 GenomeRNAi:154197
NextBio:87251 Bgee:Q8NA58 CleanEx:HS_PNLDC1 Genevestigator:Q8NA58
Uniprot:Q8NA58
Length = 520
Score = 152 (58.6 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 40/131 (30%), Positives = 71/131 (54%)
Query: 53 FIA-VSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QA 105
F+A + ++ TG + S P ++S FD P YLK + + ++F + Q + F +A
Sbjct: 12 FLAGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEA 70
Query: 106 SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQE 165
+K IA+ NF+LFP G+ F+ Q S + + + GF++N + +GI Y++E QE
Sbjct: 71 NKYIAHSCNFYLFPTT---FGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQE 127
Query: 166 STVK--VRMGN 174
++ + GN
Sbjct: 128 KKIRHDILTGN 138
Score = 132 (51.5 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP +ID
Sbjct: 236 RGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKS 295
Query: 371 LLKDI 375
+ KDI
Sbjct: 296 VTKDI 300
>UNIPROTKB|F5H1Z4 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
Pfam:PF01424 Pfam:PF04857 PROSITE:PS51061 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN IPI:IPI01009342
ProteinModelPortal:F5H1Z4 SMR:F5H1Z4 Ensembl:ENST00000538472
ArrayExpress:F5H1Z4 Bgee:F5H1Z4 Uniprot:F5H1Z4
Length = 207
Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/141 (31%), Positives = 68/141 (48%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK Y Y + K P F CQ+S + +A +GFD
Sbjct: 62 MDFLLFQFGLCTFK--------YDYT-------DSKSS-PDVKFVCQSSSIDFLASQGFD 105
Query: 149 FNTCIYDGISYLSEAQESTVK 169
FN +GI YL++ +E ++
Sbjct: 106 FNKVFRNGIPYLNQEEERQLR 126
>POMBASE|SPBC29A10.09c [details] [associations]
symbol:SPBC29A10.09c "CAF1 family ribonuclease
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003676
"nucleic acid binding" evidence=ISM] [GO:0003723 "RNA binding"
evidence=IC] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006402 "mRNA catabolic
process" evidence=ISM] InterPro:IPR006941 InterPro:IPR012337
Pfam:PF04857 PomBase:SPBC29A10.09c GO:GO:0005634 EMBL:CU329671
GO:GO:0003723 SUPFAM:SSF53098 GO:GO:0006402 GO:GO:0004540
HSSP:O95453 eggNOG:NOG145331 PIR:T40064 RefSeq:NP_596054.1
ProteinModelPortal:O94386 EnsemblFungi:SPBC29A10.09c.1
GeneID:2540515 KEGG:spo:SPBC29A10.09c OMA:ASIDHIC OrthoDB:EOG4DZ542
NextBio:20801642 Uniprot:O94386
Length = 427
Score = 164 (62.8 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 52/203 (25%), Positives = 99/203 (48%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I NF E+L E++ H+ S+ ++++ + +G ++ +T + Y + ++ R
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRD--FNLNNKNTLQDRYELLRKSSIR 59
Query: 91 FQILQFAICPFKLQAS-KVIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ILQ I LQ + K P N ++ P +DEL + F + S + + ++GF
Sbjct: 60 YTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHL---KRDFCSEASSIKFLIQQGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN + +G+ YLS +E + ++ N + D T S L D + R+++K+
Sbjct: 117 DFNKQLTEGVPYLSRIEERNLIDKV-NERSTDDLTSS----ILDACDEEILVDARNQIKN 171
Query: 208 WKNA-CTDSDIKTEALVTSLRKI 229
W ++ + S K + TS R I
Sbjct: 172 WLSSELSHSTSKYLNITTSNRFI 194
>UNIPROTKB|B4DSB0 [details] [associations]
symbol:PARN "cDNA FLJ58618, highly similar to
Poly(A)-specific ribonuclease PARN (EC 3.1.13.4)" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR006941
InterPro:IPR012337 InterPro:IPR012677 InterPro:IPR014789
Pfam:PF04857 Pfam:PF08675 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0046872 Gene3D:3.30.70.330 GO:GO:0003723 SUPFAM:SSF53098
GO:GO:0006402 GO:GO:0004535 EMBL:AC009167 HOVERGEN:HBG053512
EMBL:AC092291 UniGene:Hs.253197 HGNC:HGNC:8609 ChiTaRS:PARN
EMBL:AK299653 IPI:IPI00976057 SMR:B4DSB0 STRING:B4DSB0
Ensembl:ENST00000539279 UCSC:uc010uzf.2 Uniprot:B4DSB0
Length = 464
Score = 121 (47.7 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQ---NKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R ++ S ++++ +RE Q EQ N V GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMH 120
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
+F PLP +++EF FP+++D L+ P K + N + ++A L+ R
Sbjct: 121 TVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 174
Score = 83 (34.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLK-KK 60
Query: 89 ERFQIL 94
ER+ ++
Sbjct: 61 ERYIVI 66
Score = 37 (18.1 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 537 LSNTFKNVMNSKAVSG-PLREMVSDGLKAAGYETY 570
L T N ++ G P + S+ L AGY+ Y
Sbjct: 175 LKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAY 209
>DICTYBASE|DDB_G0275089 [details] [associations]
symbol:DDB_G0275089 "Target of EGR1 protein 1"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 PROSITE:PS50103
dictyBase:DDB_G0275089 GO:GO:0005634 GO:GO:0008270 GO:GO:0003676
EMBL:AAFI02000013 SUPFAM:SSF53098 eggNOG:NOG313546 KO:K13202
RefSeq:XP_643803.1 ProteinModelPortal:Q86I34
EnsemblProtists:DDB0167429 GeneID:8619848 KEGG:ddi:DDB_G0275089
InParanoid:Q86I34 Uniprot:Q86I34
Length = 559
Score = 112 (44.5 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
+R + ++D+++ +Q P V HN + D FI + LP +N+FI + FP++ D
Sbjct: 262 LRRSKLLLDILTKAQLPSVIHNGIFDLLFIFQSLIGDLPDKLNDFISKILSVFPKIYDTK 321
Query: 370 YL 371
Y+
Sbjct: 322 YI 323
Score = 67 (28.6 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFA 87
+K++T NF++ + +N + + FI++ + TG F + D E +
Sbjct: 30 VKRVTLKNFDKEIINFENDLKEATFISIDTEFTGLGFQKG---LKQEDIQEKYHAMINLV 86
Query: 88 AERFQILQFAICPFK 102
+R IL+F I FK
Sbjct: 87 KQR-SILEFGISIFK 100
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 139 LTAMAKEGFDFNTCIYDGISYLS 161
+T ++K GFDF GI + S
Sbjct: 178 MTFLSKHGFDFQELFLYGIPFQS 200
>WB|WBGene00010734 [details] [associations]
symbol:K10C8.1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0040011 "locomotion"
evidence=IMP] InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857
GO:GO:0005634 GO:GO:0040011 GO:GO:0003676 SUPFAM:SSF53098
eggNOG:NOG145331 GeneTree:ENSGT00530000063673 EMBL:Z74474
PIR:T23559 RefSeq:NP_506169.2 UniGene:Cel.3035
ProteinModelPortal:Q21412 SMR:Q21412 DIP:DIP-24647N
MINT:MINT-1067350 STRING:Q21412 EnsemblMetazoa:K10C8.1
GeneID:187256 KEGG:cel:CELE_K10C8.1 UCSC:K10C8.1 CTD:187256
WormBase:K10C8.1 HOGENOM:HOG000018664 InParanoid:Q21412 OMA:PIVGHNF
NextBio:934662 Uniprot:Q21412
Length = 566
Score = 93 (37.8 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 293 DLLKRE--LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 350
D LK + L+ ++ V+G ++ ++ + K +V HNSL D +++ F + LP N
Sbjct: 239 DYLKEKDNLERARARCSESVKGVSAILQVVHMTGKLVVGHNSLLDAMYMYHYFFSHLPAN 298
Query: 351 MNEFICSLRLAFPQVIDVNYL 371
F FP+++D L
Sbjct: 299 YQMFKDKFNALFPRIMDTKLL 319
Score = 86 (35.3 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 28/125 (22%), Positives = 59/125 (47%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T +NF ++ ++ + DF+A+ + G S +S DT E+ Y + ++
Sbjct: 4 VTDSNFLDAAGTLRKGLLYCDFVAIDFEFLGLDVSA---ISLHDTVESRYQILRDNVIKY 60
Query: 92 QILQFAICPFKLQASKVI-AYPYNFHLFPR---DELKMGMPSYSFTCQTSY-LTAMAKEG 146
+ Q + FK ++++ A Y+ LF R ++ + +PS F + + L + +G
Sbjct: 61 RPCQLGLTLFKQKSNRAYKADTYSVPLFQRFGDNDTSISLPSMRFLVKNKFNLNQVFMDG 120
Query: 147 FDFNT 151
+F T
Sbjct: 121 VEFCT 125
>ZFIN|ZDB-GENE-070912-533 [details] [associations]
symbol:toe1 "target of EGR1, member 1 (nuclear)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000571
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 PROSITE:PS50103
ZFIN:ZDB-GENE-070912-533 GO:GO:0005634 GO:GO:0008270 GO:GO:0003676
SUPFAM:SSF53098 GeneTree:ENSGT00390000004077 EMBL:BX649522
EMBL:CU571172 IPI:IPI00898852 Ensembl:ENSDART00000115364
Bgee:F1Q5Z4 Uniprot:F1Q5Z4
Length = 487
Score = 108 (43.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 44/155 (28%), Positives = 69/155 (44%)
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNYLLKDI 375
++L+ A+ KPLV HN L D F++ F A LP + F L FP + D Y +
Sbjct: 151 VELLRAN-KPLVLHNGLIDLVFLYQCFYAHLPDRLGTFTADLSQMFPSGIYDTKYATE-- 207
Query: 376 GPVKKMTNISATIAYLKNRFFAPIEMEIPN-QANENEGKIHGHNV-VKICQLFGKLCSIL 433
+ T +YL+ +A + ++ N +A E EG G N+ V+ C+ G + + +
Sbjct: 208 ------YELRFTASYLE---YAYKKCKLENSKAIEAEGS--GSNLFVEFCKYTGNMETYI 256
Query: 434 KITPDAIESSDDFLASAINRYANIFYSLPGSSQEP 468
P S D A I + + P SQ P
Sbjct: 257 DYRPCLDSQSQDDGALNICVQFSAYGWCPNGSQCP 291
Score = 67 (28.6 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 33/136 (24%), Positives = 51/136 (37%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P+ + NF E + + I +S FIA+ + +G S + ++ E Y A
Sbjct: 8 PVIDVQGNNFKELWAAMVIAIKTSSFIAIDTELSGLGS---RKALLAESIEDRYNAICHA 64
Query: 88 AERFQILQFAICPFKLQASKV----IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
A +L +K +K + YN L +E + S F Q
Sbjct: 65 ARTRSVLSLGFACYKELENKAETTYLVQVYNLTLLCSEEYIIEPQSVQFLVQ-------- 116
Query: 144 KEGFDFNTCIYDGISY 159
GFDFN +GI Y
Sbjct: 117 -HGFDFNKQYAEGIPY 131
>UNIPROTKB|H3BT23 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006941 InterPro:IPR012337 Pfam:PF04857 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN Ensembl:ENST00000562896 Bgee:H3BT23
Uniprot:H3BT23
Length = 109
Score = 101 (40.6 bits), Expect = 0.00021, P = 0.00021
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 35 TNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQ 92
T+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F
Sbjct: 30 TDFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFL 89
Query: 93 ILQFAICPFK 102
+ QF +C FK
Sbjct: 90 LFQFGLCTFK 99
>UNIPROTKB|Q17QN2 [details] [associations]
symbol:TOE1 "Target of EGR1 protein 1" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR006941 InterPro:IPR012337
Pfam:PF00642 Pfam:PF04857 PROSITE:PS50103 GO:GO:0005730
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0003676
SUPFAM:SSF53098 EMBL:BC118261 IPI:IPI00723665 RefSeq:NP_001069062.1
UniGene:Bt.28668 ProteinModelPortal:Q17QN2 SMR:Q17QN2 PRIDE:Q17QN2
Ensembl:ENSBTAT00000043071 GeneID:513052 KEGG:bta:513052 CTD:114034
eggNOG:NOG313546 GeneTree:ENSGT00390000004077 HOGENOM:HOG000231417
HOVERGEN:HBG080270 InParanoid:Q17QN2 KO:K13202 OMA:TADLCEM
OrthoDB:EOG4V437N NextBio:20870679 ArrayExpress:Q17QN2
Uniprot:Q17QN2
Length = 524
Score = 98 (39.6 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNY 370
++LI A ++PLV HN L D F++ F A LP N+ F L FP + D Y
Sbjct: 178 LELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAGIYDTKY 231
Score = 67 (28.6 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 35/147 (23%), Positives = 54/147 (36%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TK+ ++ P+ + NF E + I +++F+AV + +G +
Sbjct: 24 TKSGEELVVQVPVVDVQSDNFKEMWPSLLLAIKTANFVAVDTELSGLGD---RKCLLNQC 80
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASK----VIAYPYNFHLFPRDELKMGMPSYSF 132
E Y AA IL + FK Q K +A +N L +E + S F
Sbjct: 81 IEERYKAVCHAARTRSILSLGLACFKQQPDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQF 140
Query: 133 TCQTSYLTAMAKEGFDFNTCIYDGISY 159
Q GF+FN GI Y
Sbjct: 141 LVQ---------HGFNFNRQYAQGIPY 158
Score = 43 (20.2 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 560 DGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELINL 618
DGL AG++ + +G +A + + SH C SE +++YLS + + L
Sbjct: 449 DGLHRAGFDAFM----TGY---VMA-YVGVSQGSHPCSSEPWLPECHNKVYLSGKAVPL 499
>UNIPROTKB|H3BRK1 [details] [associations]
symbol:PARN "Poly(A)-specific ribonuclease PARN"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001374 InterPro:IPR006941 InterPro:IPR012337
Pfam:PF01424 Pfam:PF04857 PROSITE:PS51061 GO:GO:0005634
GO:GO:0003676 SUPFAM:SSF53098 EMBL:AC009167 EMBL:AC092291
HGNC:HGNC:8609 ChiTaRS:PARN Ensembl:ENST00000569444 Uniprot:H3BRK1
Length = 261
Score = 117 (46.2 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 45/160 (28%), Positives = 76/160 (47%)
Query: 238 SRPSMTIDVCSERQVQLVLKMLEDF--SDVLVPLII-PAKGGGTQAVRAVLTSSDEDKDL 294
S+ +TI ++ + V++ +ED S+ L + P G + + L S K +
Sbjct: 16 SKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTL-SWKYPKGI 74
Query: 295 LKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 354
L+T + E N V GF VI I+ S K ++ HN L D +F PLP +++EF
Sbjct: 75 HVETLETEKEELNDAV-GFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEF 133
Query: 355 ICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394
FP+++D L+ P K + N + ++A L+ R
Sbjct: 134 KEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKR 171
Score = 37 (18.1 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 537 LSNTFKNVMNSKAVSG-PLREMVSDGLKAAGYETY 570
L T N ++ G P + S+ L AGY+ Y
Sbjct: 172 LKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAY 206
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 621 621 0.00089 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 613 (65 KB)
Total size of DFA: 331 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.41u 0.10s 51.51t Elapsed: 00:00:02
Total cpu time: 51.41u 0.10s 51.51t Elapsed: 00:00:02
Start: Sat May 11 12:36:27 2013 End: Sat May 11 12:36:29 2013