BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007029
(621 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255572662|ref|XP_002527264.1| ribonuclease, putative [Ricinus communis]
gi|223533357|gb|EEF35108.1| ribonuclease, putative [Ricinus communis]
Length = 624
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/620 (64%), Positives = 486/620 (78%), Gaps = 9/620 (1%)
Query: 9 PLRI--RSFCTKTVQQNPH---HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
PLR+ R FCTK H W +KQITK+NF +SL EI +HI SDFI++SL+ TGS
Sbjct: 7 PLRLQRRLFCTKIHHHRAHTHNQWNVKQITKSNFADSLPEINSHIMCSDFISISLKTTGS 66
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FSSPWHRVS FDTP+ AYLK+K AAE+FQILQ A+CPF + ASKV AYPYNFHLFPRDEL
Sbjct: 67 FSSPWHRVSPFDTPDVAYLKSKHAAEKFQILQLAVCPFTVSASKVTAYPYNFHLFPRDEL 126
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
GMPSYSF+C TSYLT M +EGFDFN C+ DGISYLS AQES +VRM NP +
Sbjct: 127 NSGMPSYSFSCHTSYLTKMVQEGFDFNACVNDGISYLSRAQESAARVRMKNPFLAKDIVE 186
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMT 243
S+S+P VAD+VF++R RSRVK+WKNACTD+ EALV SLRK+VLG E++ SRP +
Sbjct: 187 STSTPG--VADSVFVQRTRSRVKNWKNACTDTSSTDEALVKSLRKLVLGLEEYNSRPCIN 244
Query: 244 IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE 303
IDVCSERQV LV++ML++F+D LVPLI+PAKGGGTQAVR VLTSS ED+DLL+ ELQ E
Sbjct: 245 IDVCSERQVHLVIEMLQEFADDLVPLIVPAKGGGTQAVRVVLTSSKEDRDLLQMELQNLE 304
Query: 304 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
EQNK++RGFREVIDLIS S+KP+V+HNSLND FIHSKFLAPLPP+M EF CSLRL FP
Sbjct: 305 DEQNKKIRGFREVIDLISGSEKPVVSHNSLNDLAFIHSKFLAPLPPSMEEFTCSLRLVFP 364
Query: 364 QVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKIC 423
QVIDVN+L+K+I P+KK+TNI +YLKN FFAP++MEIP A NEGKIHGHNV++IC
Sbjct: 365 QVIDVNHLMKEISPLKKVTNIPMATSYLKNWFFAPVDMEIPFPAMVNEGKIHGHNVMRIC 424
Query: 424 QLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKV 483
QLF KLC ILK+ P++I+S++ LASAI Y NIF QEPT+E++R WTN+ RKV
Sbjct: 425 QLFAKLCYILKLAPNSIQSNEKNLASAIEAYVNIFSPYFPGPQEPTDEDVRIWTNNTRKV 484
Query: 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKN 543
SC+D+VFLWGFR R+SAG+LK++LQ SH+VF+E F+VR VD+SCAIVVF +PGLSNT +
Sbjct: 485 SCQDLVFLWGFRYRMSAGMLKSLLQQSHKVFSEEFDVRFVDKSCAIVVFWEPGLSNTLLD 544
Query: 544 VM-NSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAY 602
V+ S + GPLREMVS+G++AA Y+TY RVC GLW LAD+LDK LA + S++
Sbjct: 545 VLKGSSEIVGPLREMVSEGVRAASYDTYNRVCRLGLWHENLADSLDKALADTDHPSDSDS 604
Query: 603 ETKQSEIYLSNE-LINLAEL 621
T S Y +E +INL EL
Sbjct: 605 VTSSSNTYWCHEWMINLDEL 624
>gi|224136934|ref|XP_002326981.1| predicted protein [Populus trichocarpa]
gi|222835296|gb|EEE73731.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/626 (62%), Positives = 493/626 (78%), Gaps = 16/626 (2%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W IKQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTGS
Sbjct: 5 SPLLQRRLLSTSVTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQNTGS 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CP ++ASKV AYPYNFHLFPR EL
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYPYNFHLFPRAEL 124
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
KM MPSYSF CQTS L +MA++GFDFN+CI DGISYLS QEST K++MGNP+ + T+
Sbjct: 125 KMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESTAKIQMGNPILAKNVTE 184
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTE------ALVTSLRKIVLGGEQFG 237
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 185 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 242
Query: 238 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 297
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 243 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQG 302
Query: 298 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 357
+LQ E E K+VRGFREVIDLISASQKP+V+H SLND T IHSKF+APLPP ++EF+CS
Sbjct: 303 KLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFMCS 362
Query: 358 LRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGH 417
LRLAFP VIDVN+L+K+I P++K+T+I I+ LKNRFF PI+MEIP QA ENE IHG
Sbjct: 363 LRLAFPLVIDVNHLMKEISPLRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIHGQ 422
Query: 418 NVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWT 477
NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+ WT
Sbjct: 423 NVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKIWT 482
Query: 478 NDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGL 537
N+ R VSCED+VFLWGF +R++AGILK++LQ SHE F++ F+VR+VD SCAIV+F + GL
Sbjct: 483 NNTRTVSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQHGL 542
Query: 538 SNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNC 596
+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA +C
Sbjct: 543 TETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALADSDC 602
Query: 597 LSEAAYETKQSEIYLSNE-LINLAEL 621
SEA +TK S+ NE +INL +L
Sbjct: 603 ASEADSKTKCSD--RCNEWIINLDDL 626
>gi|224132034|ref|XP_002321239.1| predicted protein [Populus trichocarpa]
gi|222862012|gb|EEE99554.1| predicted protein [Populus trichocarpa]
Length = 628
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/628 (59%), Positives = 484/628 (77%), Gaps = 18/628 (2%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W +KQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTG
Sbjct: 5 SPLLQRRLLSTSVTRTHHKPQQQWSVKQVTKSNFADTLEDIKSHVSNSDFVAVSLQNTGF 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CPF ++ASKV AYPYNFHLFPR EL
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPFTVRASKVTAYPYNFHLFPRAEL 124
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
KM MPSYSF CQTS L +MA++GFDFN+CI DGISYLS QES K++MGNP+ + T+
Sbjct: 125 KMEMPSYSFYCQTSSLISMARQGFDFNSCINDGISYLSREQESAAKIQMGNPILAKNVTE 184
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTE------ALVTSLRKIVLGGEQFG 237
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 185 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 242
Query: 238 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 297
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 243 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQE 302
Query: 298 E-LQTFEFEQNKRVRGFREVIDLISA-SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
+ +F E + +G +++L++ + KP+V+H SLND T IHSKF+APLPP ++EF+
Sbjct: 303 NTVISFTREGSPGTKGKSLIVNLVAEYNLKPVVSHGSLNDLTVIHSKFIAPLPPTVDEFM 362
Query: 356 CSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH 415
CSLRLAFP VIDVN+L+K+I P++K+T+I I+ LKNRFF PI+MEIP QA ENE IH
Sbjct: 363 CSLRLAFPLVIDVNHLMKEISPLRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIH 422
Query: 416 GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRG 475
G NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+
Sbjct: 423 GQNVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKI 482
Query: 476 WTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKP 535
WTN+ R VSCED+VFLWGF +R++AGILK++LQ SHE F++ F+VR+VD SCAIV+F +
Sbjct: 483 WTNNTRTVSCEDMVFLWGFGDRVTAGILKSLLQESHEAFSKEFDVRLVDNSCAIVIFWQH 542
Query: 536 GLSNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASH 594
GL+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA
Sbjct: 543 GLTETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALADS 602
Query: 595 NCLSEAAYETKQSEIYLSNE-LINLAEL 621
+C SEA +TK S+ NE +INL +L
Sbjct: 603 DCASEADSKTKCSD--RCNEWIINLDDL 628
>gi|15230837|ref|NP_189170.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
gi|75162449|sp|Q8W4C3.1|PARNL_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN-like; AltName:
Full=Polyadenylate-specific ribonuclease-like protein
gi|17065176|gb|AAL32742.1| Unknown protein [Arabidopsis thaliana]
gi|30725444|gb|AAP37744.1| At3g25430 [Arabidopsis thaliana]
gi|332643489|gb|AEE77010.1| Poly(A)-specific ribonuclease PARN-like protein [Arabidopsis
thaliana]
Length = 618
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/613 (55%), Positives = 452/613 (73%), Gaps = 18/613 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT--EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 430
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 431 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 549
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 550 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 609
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
Query: 610 YLSNEL-INLAEL 621
SNEL IN EL
Sbjct: 606 DWSNELAINFDEL 618
>gi|356527283|ref|XP_003532241.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 619
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/602 (54%), Positives = 452/602 (75%), Gaps = 9/602 (1%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP-WHRVSTFDTPETAYLKAK 85
W +KQ+T +NF ESL EIK HIS+SDF+A+S+ TGS S+P W R FDT +TAY KA+
Sbjct: 20 WRVKQVTTSNFQESLQEIKTHISNSDFVAISMGKTGSPSAPSWLRPLPFDTAQTAYSKAR 79
Query: 86 FAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
AA+RFQ+L FA+CPF + S K++A+PYNF LFPRDE+KMGMP+YSF+CQTS L +MA+
Sbjct: 80 RAAQRFQLLHFAVCPFSVSRSDKLLAHPYNFMLFPRDEMKMGMPTYSFSCQTSLLASMAR 139
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN C+Y+GISYLS AQES ++R+G + KSSS P+ +VADTVF+ER+RS+
Sbjct: 140 QGFDFNACVYNGISYLSRAQESAARIRLGTALPSLRVMKSSS-PS-TVADTVFVERIRSK 197
Query: 205 VKHWKNACTDSDI---KTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
VK+W+ +C SD + E LV SLR IVLG EQF SRP MT+DVCSERQVQL+L+M+ D
Sbjct: 198 VKYWRESCKSSDTNKSRDEELVNSLRNIVLGNEQFRSRPCMTVDVCSERQVQLILEMVLD 257
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 321
+SD L+PL IP K G AVR VL +S EDKDLL+REL+ E E++K++RGFREVIDLIS
Sbjct: 258 YSDDLLPLPIPTKSGTIHAVRIVLANSKEDKDLLERELRNLEEEESKKIRGFREVIDLIS 317
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
ASQKP+++HN LND T IHSKF+APLPP ++EF+ SL FP+V+D+NYL+K G ++K+
Sbjct: 318 ASQKPVISHNCLNDCTLIHSKFIAPLPPEIDEFVSSLCSVFPEVLDINYLMKKHGTMRKV 377
Query: 382 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIE 441
TNI + I+YL N FFAP+++EIP+QA EGKIHG +++ LF KLCSILKI+P+ E
Sbjct: 378 TNIPSAISYLNNHFFAPVDLEIPDQATVKEGKIHGLTALRLSYLFMKLCSILKISPNVTE 437
Query: 442 SSDDFLASAINRYANIFYSLPGSSQEPTN-EEIRGWTNDKRKVSCEDVVFLWGFRERISA 500
S + LA + + N+F+ Q+ N ++ WTN+ +KVSCE +VFLWGF+ I+A
Sbjct: 438 SGNKHLAPELEDFTNVFHPFSTPIQDSFNGGDVGMWTNNTKKVSCEHLVFLWGFKIGITA 497
Query: 501 GILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSD 560
G+LK++L+ SH++F+ F+V++VD+SCAIVVF + G+S F +++NS+ + G L+E+VSD
Sbjct: 498 GMLKSLLRSSHDIFSREFDVKLVDKSCAIVVFWQSGVSKRFLDILNSEEIRGDLKELVSD 557
Query: 561 GLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNE-LINLA 619
G++ YETY +C GLWE LA++L++ L S C E+ E K SEI+ N+ +INL
Sbjct: 558 GMRVTSYETYNTICRLGLWEMDLAESLERALESSCCDIESNCERKSSEIHWYNDNVINLD 617
Query: 620 EL 621
+L
Sbjct: 618 DL 619
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/600 (55%), Positives = 444/600 (74%), Gaps = 17/600 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT--EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 430
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 431 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 549
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 550 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 609
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
>gi|449502106|ref|XP_004161545.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Cucumis sativus]
Length = 610
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/615 (53%), Positives = 453/615 (73%), Gaps = 14/615 (2%)
Query: 1 MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60
M +F L R + T + W ++Q+ +NF SL ++KN IS SDFIA+SLQ
Sbjct: 1 MASRFSYFQLHRRLYTTTS------QWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQR 54
Query: 61 TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120
TGS S PWHR+ FDT +TAY KAK+AAE+FQI+QF++CPF ++ SK+IA+PYNFHLFPR
Sbjct: 55 TGSSSFPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPR 114
Query: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180
DEL +GMPSYSF+CQ S+LT+MA+EGFDF +YDGISYLS AQES K +MG+ +
Sbjct: 115 DELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPN 174
Query: 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRP 240
S LSVADT+F++RV+SRVK+WK+A S ++AL+++L+K+++G EQ+GSRP
Sbjct: 175 INAVKPSSELSVADTIFVQRVKSRVKNWKDAYDSSSKTSDALLSTLKKLIVGSEQYGSRP 234
Query: 241 SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQ 300
S+ IDV SERQV LVL++L++FSD LVP++I AKGGGTQAVRA+LTSS EDK LL++ELQ
Sbjct: 235 SIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKELQ 294
Query: 301 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
E ++NK+ RGFREVID+ISASQKP+V++NSL+DFTFIHSKFLAPLP +++E+ SL
Sbjct: 295 YLEDKENKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHS 354
Query: 361 AFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVV 420
FP+V DV +L+ IG + K +I+A +YLKN ++AP ++IP +A N+ K HGHN +
Sbjct: 355 VFPRVHDVKHLMSKIGGLSKPMSIAAAYSYLKNXYYAPSYLDIPVEAPGNDHKPHGHNAI 414
Query: 421 KICQLFGKLCSILKITPDAIESSD-DFLASAINRYANIFYSLPGSSQEPTNEEIRGWTND 479
++C LF ++CS+LKI ++S+D + LAS ++ +N+ P + P +E+++ W
Sbjct: 415 RLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNVSSFSPYHCK-PKDEDVKIWAQG 473
Query: 480 KRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSN 539
RKVSC +VFLWG RE ++A +LK L+G+HEVF E F+VR VD+ CAIVVF +P LS
Sbjct: 474 VRKVSCRHLVFLWGLREGLTARLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLSE 533
Query: 540 TFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
TF + +NS + G LREMVS+GL+AAGYETY+++CS LWE+ LA++L++ + E
Sbjct: 534 TFLDAINSDNIVGSLREMVSEGLRAAGYETYKKICSFDLWEADLAESLERAIL------E 587
Query: 600 AAYETKQSEIYLSNE 614
A ET Q +I SN+
Sbjct: 588 ADPETAQLDINYSND 602
>gi|449462471|ref|XP_004148964.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 610
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/615 (53%), Positives = 453/615 (73%), Gaps = 14/615 (2%)
Query: 1 MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQN 60
M +F L R + T + W ++Q+ +NF SL ++KN IS SDFIA+SLQ
Sbjct: 1 MASRFSYFQLHRRLYTTTS------QWSVRQVRNSNFLGSLEDLKNDISDSDFIALSLQR 54
Query: 61 TGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120
TGS S PWHR+ FDT +TAY KAK+AAE+FQI+QF++CPF ++ SK+IA+PYNFHLFPR
Sbjct: 55 TGSSSFPWHRLQPFDTHDTAYCKAKYAAEKFQIIQFSLCPFSVRDSKLIAHPYNFHLFPR 114
Query: 121 DELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180
DEL +GMPSYSF+CQ S+LT+MA+EGFDF +YDGISYLS AQES K +MG+ +
Sbjct: 115 DELNIGMPSYSFSCQVSHLTSMAREGFDFGAWVYDGISYLSRAQESIAKTQMGSQTLPPN 174
Query: 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRP 240
S LSVADT+F++RV+SRVK+WK+A S ++AL+++L+K+++G EQ+GSRP
Sbjct: 175 INAVKPSSELSVADTIFVQRVKSRVKNWKDAYDSSSKTSDALLSTLKKLIVGSEQYGSRP 234
Query: 241 SMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQ 300
S+ IDV SERQV LVL++L++FSD LVP++I AKGGGTQAVRA+LTSS EDK LL++ELQ
Sbjct: 235 SIVIDVYSERQVLLVLELLKEFSDDLVPVVISAKGGGTQAVRAILTSSKEDKILLEKELQ 294
Query: 301 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
E ++NK+ RGFREVID+ISASQKP+V++NSL+DFTFIHSKFLAPLP +++E+ SL
Sbjct: 295 YLEDKENKKFRGFREVIDVISASQKPIVSYNSLHDFTFIHSKFLAPLPTSIDEYASSLHS 354
Query: 361 AFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVV 420
FP+V DV +L+ IG + K +I+A +YLK +++AP ++IP +A N+ K HGHN +
Sbjct: 355 VFPRVHDVKHLMSKIGGLSKPMSIAAAYSYLKKQYYAPSYLDIPVEAPGNDHKPHGHNAI 414
Query: 421 KICQLFGKLCSILKITPDAIESSD-DFLASAINRYANIFYSLPGSSQEPTNEEIRGWTND 479
++C LF ++CS+LKI ++S+D + LAS ++ +N+ P + P +E+++ W
Sbjct: 415 RLCHLFAQVCSVLKIDLSGVQSNDNECLASMLDECSNVSSFSPYHCK-PKDEDVKIWAQG 473
Query: 480 KRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSN 539
RKVSC +VFLWG RE ++A +LK L+G+HEVF E F+VR VD+ CAIVVF +P LS
Sbjct: 474 VRKVSCRHLVFLWGLREGLTARLLKASLEGTHEVFCEEFDVRFVDKKCAIVVFSQPDLSE 533
Query: 540 TFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
TF + +NS + G LREMVS+GL+AAGYETY+++CS LWE+ LA++L++ + E
Sbjct: 534 TFLDAINSDNIVGSLREMVSEGLRAAGYETYKKICSFDLWEADLAESLERAIL------E 587
Query: 600 AAYETKQSEIYLSNE 614
A ET Q +I SN+
Sbjct: 588 ADPETAQLDINYSND 602
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/600 (55%), Positives = 441/600 (73%), Gaps = 27/600 (4%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF L SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLHGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFNTCIY+GISYLS AQES K GNP+ DH T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNTCIYEGISYLSRAQESASKFLSGNPILADHIT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT--EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KRELQ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELQDLEKEENRRVRGFR 311
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
EV+DLIS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDLISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNLDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 430
I P+ ++N+ A ++ L NRFF P+++E+ NQ NEG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFVPVDVEVANQGCPVKLNEGHQSHGQNAVMISQLFAKLC 430
Query: 431 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+I K ++S++DF A A + +AN S ++ + N ++R ++
Sbjct: 431 TIQKSDQSTVQSNEDFQALASDEHANSVTSCSKNAGD-ENSKLR------------ELGV 477
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS-KA 549
+WG ++++A LKN+LQ SH VFA+ F+V+ +DRSCAIVVF + G S TF +V+N+ +
Sbjct: 478 IWGLAKKMTAAKLKNVLQKSHPVFAQEFDVKYLDRSCAIVVFWESGPSETFLSVVNNEEQ 537
Query: 550 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 609
+ G LREMV+ GL+A+GYETY+R C G WE+ LAD+LDK L S + ++ +TK SEI
Sbjct: 538 LDGSLREMVAQGLRASGYETYKRACRLGFWEADLADSLDKALESSD--TDPDSDTKPSEI 595
>gi|224129918|ref|XP_002320703.1| predicted protein [Populus trichocarpa]
gi|222861476|gb|EEE99018.1| predicted protein [Populus trichocarpa]
Length = 544
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/600 (54%), Positives = 423/600 (70%), Gaps = 77/600 (12%)
Query: 8 SPLRIRSFCTKTVQQNPH----HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGS 63
SPL R + +V + H W IKQ+TK+NF ++L +IK+H+S+SDF+AVSLQNTGS
Sbjct: 5 SPLLQRRLLSTSVTKTHHKPHQQWSIKQVTKSNFADTLKDIKSHVSNSDFVAVSLQNTGS 64
Query: 64 FSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDEL 123
FS+PW RVS FDT +TAYLKAK+AAERFQ+L FA+CP ++ASKV AYP
Sbjct: 65 FSAPWQRVSPFDTADTAYLKAKYAAERFQVLHFAVCPITVRASKVTAYP----------- 113
Query: 124 KMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
QEST K++MGNP+ + T+
Sbjct: 114 ---------------------------------------EQESTAKIQMGNPILAKNVTE 134
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTE------ALVTSLRKIVLGGEQFG 237
S+S+ LSVAD+VF+ER++S +K+WK AC ++ + E ALV SLRK+VLG E++
Sbjct: 135 STST--LSVADSVFVERIKSHIKNWKKACKETSTRKEGNQIQDALVRSLRKLVLGNEEYD 192
Query: 238 SRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR 297
SRP M IDVCSERQ QLV++ML++F+D +VPLIIPAKGG QAVR VLTSS EDKDLL+
Sbjct: 193 SRPCMNIDVCSERQAQLVVEMLQEFADDVVPLIIPAKGGAMQAVRVVLTSSKEDKDLLQG 252
Query: 298 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 357
+LQ E E K+VRGFREVIDLISASQKP+V+H SLN APLPP ++EF+CS
Sbjct: 253 KLQNDEQELKKKVRGFREVIDLISASQKPVVSHGSLN----------APLPPTVDEFMCS 302
Query: 358 LRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGH 417
LRLAFP VIDVN+L+K+I ++K+T+I I+ LKNRFF PI+MEIP QA ENE IHG
Sbjct: 303 LRLAFPLVIDVNHLMKEISALRKVTSIPVAISQLKNRFFTPIDMEIPCQAMENEDTIHGQ 362
Query: 418 NVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIR--- 474
NVVKIC+LF +LCSILKI P A++S ++ ASA+ YANIF +S+EP + EI+
Sbjct: 363 NVVKICELFARLCSILKIDPAAVKSDEEKGASALEAYANIFSPFCTASEEPIDGEIKIWT 422
Query: 475 -GWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFG 533
WTN+ R VSCED+VFLWGF +R++AG+LK++LQ SHE F++ F+VR+VD SCAIV+F
Sbjct: 423 NKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSLLQESHEAFSKEFDVRLVDNSCAIVIFW 482
Query: 534 KPGLSNTFKNVMNSKA-VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLA 592
+ GL+ TF N MN + + GPLREMVS+GL+AAGYETY R C GLWES+LAD+LD+ LA
Sbjct: 483 QHGLTETFLNTMNKCSDMRGPLREMVSEGLRAAGYETYNRACRLGLWESSLADSLDRALA 542
>gi|118487753|gb|ABK95700.1| unknown [Populus trichocarpa]
Length = 454
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/447 (61%), Positives = 351/447 (78%), Gaps = 13/447 (2%)
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
ISYLS QEST K++MGNP+ + T+S+S+ LSVAD+VF+ER++S +K+WK AC ++
Sbjct: 8 ISYLSREQESTAKIQMGNPILAKNVTESTST--LSVADSVFVERIKSHIKNWKKACKETS 65
Query: 217 IKTE------ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 270
+ E ALV SLRK+VLG E++ SRP M IDVCSERQ QLV++ML++F+D +VPLI
Sbjct: 66 TRKEGNQIQDALVRSLRKLVLGNEEYDSRPCMNIDVCSERQAQLVVEMLQEFADDVVPLI 125
Query: 271 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 330
IPAKGG QAVR VLTSS EDKDLL+ +LQ E E K+VRGFREVIDLISASQKP+V+H
Sbjct: 126 IPAKGGAMQAVRVVLTSSKEDKDLLQGKLQNDEQELKKKVRGFREVIDLISASQKPVVSH 185
Query: 331 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAY 390
SLND T IHSKF+APLPP ++EF+CSLRLAFP VIDVN+L+K+I ++K+T+I I+
Sbjct: 186 GSLNDLTVIHSKFIAPLPPTVDEFMCSLRLAFPLVIDVNHLMKEISALRKVTSIPVAISQ 245
Query: 391 LKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASA 450
LKNRFF PI+MEIP QA ENE IHG NVVKIC+LF +LCSILKI P A++S ++ ASA
Sbjct: 246 LKNRFFTPIDMEIPCQAMENEDTIHGQNVVKICELFARLCSILKIDPAAVKSDEEKGASA 305
Query: 451 INRYANIFYSLPGSSQEPTNEEIR----GWTNDKRKVSCEDVVFLWGFRERISAGILKNM 506
+ YANIF +S+EP + EI+ WTN+ R VSCED+VFLWGF +R++AG+LK++
Sbjct: 306 LEAYANIFSPFCTASEEPIDGEIKIWTNKWTNNTRTVSCEDLVFLWGFGDRVTAGVLKSL 365
Query: 507 LQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA-VSGPLREMVSDGLKAA 565
LQ SHE F++ F+VR+VD SCAIV+F + GL+ TF N MN + + GPLREMVS+GL+AA
Sbjct: 366 LQESHEAFSKEFDVRLVDNSCAIVIFWQHGLTETFLNTMNKCSDMRGPLREMVSEGLRAA 425
Query: 566 GYETYQRVCSSGLWESALADALDKTLA 592
GYETY R C GLWES+LAD+LD+ LA
Sbjct: 426 GYETYNRACRLGLWESSLADSLDRALA 452
>gi|222640635|gb|EEE68767.1| hypothetical protein OsJ_27469 [Oryza sativa Japonica Group]
Length = 601
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/565 (48%), Positives = 393/565 (69%), Gaps = 20/565 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 73
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 74 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 133
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 134 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 189
Query: 208 WKNA----CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263
W+ C +D +LV +LR+++LG E +GSRPS +IDVCS+RQVQLVL+ S
Sbjct: 190 WRKGYTKPCKTAD---GSLVNTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHIS 246
Query: 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
D LVPL++P K G +AVR + TSS EDK+LL +++ E E N + RGFREVIDL+S+S
Sbjct: 247 DDLVPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIKKMEDEHNLKFRGFREVIDLLSSS 306
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
QKP++++N LNDFT IHSKF+APLPPN++EF+CSLR+ F VID++++ ++IGP++K N
Sbjct: 307 QKPIISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVIDISHMWREIGPLRKAKN 366
Query: 384 ISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESS 443
I ++YL+ ++F P+++EIP Q N G NV++I +LF KL ++LKI+P+ S
Sbjct: 367 IQGALSYLQRQYFVPMDVEIPQQDGNNSVTKSGENVLRITKLFAKLSNLLKISPNGQTHS 426
Query: 444 DDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGIL 503
D + Y+ I Y +++E +++ +N R V ++VVFLWGFRE S L
Sbjct: 427 GD-KCHTVEEYSYILYP-SCTAEESEDDKSSNESNTTRSVRTDNVVFLWGFRE-TSVKEL 483
Query: 504 KNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLK 563
++ L H F++ F +R++D SC+ ++F + +NS++ S L S+GLK
Sbjct: 484 RSRLASLHHAFSKDFELRLLDNSCSALIFHSSDTAIDLLREINSESPS--LNNFFSEGLK 541
Query: 564 AAGYETYQRVCSSGLWESALADALD 588
AAG++ Y++VC SGLW+S LA+ALD
Sbjct: 542 AAGFDAYRKVCRSGLWDSDLAEALD 566
>gi|218201212|gb|EEC83639.1| hypothetical protein OsI_29373 [Oryza sativa Indica Group]
Length = 602
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/565 (48%), Positives = 392/565 (69%), Gaps = 20/565 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 16 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 74
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 75 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 134
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 135 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 190
Query: 208 WKNA----CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263
W+ C +D +LV +LR++VLG E +GSRPS +IDVCS+RQVQLVL+ S
Sbjct: 191 WRKGYTKPCKTAD---GSLVNTLRQLVLGSESYGSRPSFSIDVCSDRQVQLVLEAANHIS 247
Query: 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
D LVPL++P K G +AVR + TSS EDK+LL +++ E E N + RGFREVIDL+S+S
Sbjct: 248 DDLVPLVVPDKAGTARAVRVIFTSSPEDKNLLLMDIKKMEDEHNLKFRGFREVIDLLSSS 307
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
QKP++++N LNDFT IHSKF+APLPPN++EF+CSLR+ F VID++++ ++IGP++K N
Sbjct: 308 QKPIISYNFLNDFTMIHSKFVAPLPPNLHEFMCSLRMVFSNVIDISHMWREIGPLRKAKN 367
Query: 384 ISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESS 443
I ++YL+ ++F P+++EIP Q N G NV++I +LF KL ++LKI+P+
Sbjct: 368 IQGALSYLQRQYFVPMDVEIPQQDGNNSVTKSGENVLRITKLFAKLSNLLKISPNGQTHP 427
Query: 444 DDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGIL 503
D + Y+ I Y +++E +++ +N R V ++VVFLWGFRE S L
Sbjct: 428 GD-KCHTVEEYSYILYP-SCTAEESEDDKSSNESNTTRSVRTDNVVFLWGFRE-TSVKEL 484
Query: 504 KNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLK 563
++ L H F++ F +R++D SC+ ++F + +NS++ S L S+GLK
Sbjct: 485 RSRLASLHHAFSKDFELRLLDNSCSALIFHSSDAAIDLLREINSESPS--LNNFFSEGLK 542
Query: 564 AAGYETYQRVCSSGLWESALADALD 588
AAG++ Y++VC SGLW+S LA+ALD
Sbjct: 543 AAGFDAYRKVCRSGLWDSDLAEALD 567
>gi|357141478|ref|XP_003572239.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 596
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/593 (47%), Positives = 398/593 (67%), Gaps = 20/593 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+TK NF E+L E+ H+ D++AV+ TG+ + W R DT ETAYLKAK AAE
Sbjct: 9 KQVTKRNFPEALQELAAHLKECDYVAVAALKTGA-PTGWRRALPVDTAETAYLKAKLAAE 67
Query: 90 RFQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ L A+CPF+ A S V+AYPYNFHLFPRDEL++GMPSYSF+CQTSY ++MA++G
Sbjct: 68 SFQPLHIAVCPFRFDATSHSTVVAYPYNFHLFPRDELQLGMPSYSFSCQTSYFSSMARDG 127
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ P H + S SP+ +VAD+VF R++SR++
Sbjct: 128 FDFNMCIYDGISYLSRVQESLARQKIFIP----HLRQPSPSPSTTVADSVFTTRIKSRIQ 183
Query: 207 HWKNACTD-SDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
HW+ + S +LV SLRK++LGGE +GSRPSM+IDVCS+RQVQLVL+ + SD
Sbjct: 184 HWRKGYAEPSKTADGSLVNSLRKLILGGESYGSRPSMSIDVCSDRQVQLVLETINRVSDD 243
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
LVPL++P K G ++AVR + TSS+EDK+LL ++Q E E + + RGFREVIDL+S+SQK
Sbjct: 244 LVPLVVPDKAGMSRAVRVIFTSSEEDKNLLLMDIQKLEDEHSVKFRGFREVIDLLSSSQK 303
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
P++++N LND T IH+KF+ PLPPNM+EF CSLR+ F V+DV +L ++IGP++ NI
Sbjct: 304 PIISYNCLNDLTMIHTKFIGPLPPNMHEFTCSLRMVFSSVVDVGHLWREIGPLRNAKNIQ 363
Query: 386 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 445
A ++YL+ ++F P+E+EIP Q N G NV++I +LF KL +LKI+P S +
Sbjct: 364 AALSYLQRQYFVPMEIEIPQQDGTNSVTKGGENVLRITKLFAKLSMLLKISPKHQSQSGE 423
Query: 446 FLASAINRYANIFYSLPGS-SQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILK 504
+ + NIFY PG + E + + + R VS + V+FLWGFR + SA L+
Sbjct: 424 -QHHTVEDFCNIFY--PGCMAGESDDVDCTKEPDITRTVSTDSVIFLWGFR-KTSAKELR 479
Query: 505 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 563
+L H VF+ F +R++D++C++++F S+T ++ + P L S+GLK
Sbjct: 480 YLLTRLHHVFSNDFELRLLDKTCSVLIFRS---SDTPMELLREISSESPSLNNFFSEGLK 536
Query: 564 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELI 616
AAG++ Y +VC GLW+S LA+AL+ + + + + T SEIY ++ L+
Sbjct: 537 AAGFDVYWKVCRLGLWDSDLAEALEAVSSEQATSALSGHGT--SEIYWNSSLM 587
>gi|242079291|ref|XP_002444414.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
gi|241940764|gb|EES13909.1| hypothetical protein SORBIDRAFT_07g021600 [Sorghum bicolor]
Length = 599
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/565 (47%), Positives = 394/565 (69%), Gaps = 18/565 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E++ H+ + D++AV+ Q TG+ + W R DT ETAYLKAK AAE
Sbjct: 12 KQVTRQNFAEAVRELRAHLEACDYVAVAAQKTGA-PTGWRRALPVDTAETAYLKAKLAAE 70
Query: 90 RFQILQFAICPFKLQASK---VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ LQFA+CPF+L++S ++AYPYNFHLFPRDEL++GMPSYSF+CQ+SYL+ MA +G
Sbjct: 71 SFQPLQFAVCPFRLRSSSPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQSSYLSTMANDG 130
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ + SP+ SV+D+VF+ R++S++
Sbjct: 131 FDFNMCIYDGISYLSRVQESLARQKI----FTSRPQQLLPSPSTSVSDSVFVNRIKSKIL 186
Query: 207 HWKNACTDSDIKTE-ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
HW+ D K + +LV+SL +++LGGE +GSRPSM+IDVCS+RQVQLVL+ + SD
Sbjct: 187 HWRKGYADPSKKDDGSLVSSLSRLILGGETYGSRPSMSIDVCSDRQVQLVLEAVNQISDD 246
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
LV L++P K G + VR + T+S EDK+LL ++Q E EQN + RGFREVIDL+S+SQK
Sbjct: 247 LVSLVVPHKAGAARFVRVIFTNSKEDKNLLLMDIQKLEDEQNFKFRGFREVIDLLSSSQK 306
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
P++++N LND T +HSKF+APLPPNM+EF+CSL++ F V+D+++L + IGP++K NI
Sbjct: 307 PIISYNCLNDMTMLHSKFIAPLPPNMHEFLCSLKMVFSNVVDISHLWRQIGPLRKAKNIQ 366
Query: 386 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 445
A ++YL+ ++ PIE+EIP Q + + NV++I +LF KL ++LKI+P+ S +
Sbjct: 367 AALSYLQRQYCVPIEIEIPQQDGTSSVTKNEKNVLRITKLFAKLSNLLKISPECQLQSHE 426
Query: 446 FLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRK-VSCEDVVFLWGFRERISAGILK 504
+A+ Y NIFY P E +++ +D + VS ++++FLWGFRE+ S LK
Sbjct: 427 -QCTAVEEYCNIFY--PSCVVEGSDDANFAIESDTTEIVSTDNIIFLWGFREK-SVKELK 482
Query: 505 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 563
L G H+ F+E F V+++D++C+ ++F SNT ++ GP L +S+GLK
Sbjct: 483 PYLIGLHQAFSEDFEVKLLDKTCSALIFRD---SNTATQLLKEINSEGPSLNRFLSEGLK 539
Query: 564 AAGYETYQRVCSSGLWESALADALD 588
AAG+E Y++VC GLW+S LA+ L+
Sbjct: 540 AAGFEVYRKVCRLGLWDSDLAEVLE 564
>gi|326501938|dbj|BAK06461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 595
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/598 (45%), Positives = 396/598 (66%), Gaps = 21/598 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E+ H+ D++A++ TG+ + W R DT ETAYLKAKFA+E
Sbjct: 8 KQVTRRNFPEAVRELAAHVKECDYVAIAALKTGA-PTVWRRALPVDTAETAYLKAKFASE 66
Query: 90 RFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ L A+CPF+L S V+AYP+NFHLFPRDEL++GMPSYSF+CQ+SY ++MA++G
Sbjct: 67 SFQPLHIAVCPFRLGSASGSDVVAYPHNFHLFPRDELQLGMPSYSFSCQSSYFSSMARDG 126
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + + P H + S S + SVAD+VF R++SR++
Sbjct: 127 FDFNMCIYDGISYLSRVQESLARQKTFTP----HLQQPSPSASTSVADSVFTNRIKSRIQ 182
Query: 207 HWKNACTD-SDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
+W+ C + S +LV+SLRK+++G E +GSRPSMTI VCS+RQVQLVL+ ++ SD
Sbjct: 183 NWRKGCAEPSKTADGSLVSSLRKLIMGSESYGSRPSMTILVCSDRQVQLVLETVKGTSDD 242
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
LV L++P K G +AVR + TSS EDK+LL +++ E EQ+ + RGFREVIDL+S+S+K
Sbjct: 243 LVTLVVPDKAGVPRAVRVIFTSSAEDKNLLLMDIRKLEDEQSSKFRGFREVIDLVSSSEK 302
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
P++++N LND T IH++F+APLPPN++EF+CS RL F V+D+ +L ++I P++K NI
Sbjct: 303 PIISYNCLNDLTMIHAQFIAPLPPNLHEFMCSSRLVFSSVVDIGHLWREISPLRKAKNIQ 362
Query: 386 ATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDD 445
A ++YL+ + F P+E+EIP Q G NV++I +LF KL +LKITP S +
Sbjct: 363 AALSYLQRQHFVPMEIEIPLQDGTRGVTKSGENVLRITKLFAKLSKLLKITPKCQSQSGE 422
Query: 446 FLASAINRYANIFYSLPGSSQEPTNE-EIRGWTNDKRKVSCEDVVFLWGFRERISAGILK 504
+ + NI P E ++ + R VS + VVFLWGFRE SA L+
Sbjct: 423 -QHHTVEDHRNIL--CPSCMVEESDGVDCTNEPGTTRTVSTQSVVFLWGFRE-TSAEDLR 478
Query: 505 NMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLK 563
+ L H VF++ F++R++D++C+ ++F S+T ++ ++ P L S+GLK
Sbjct: 479 SRLTRLHHVFSKDFDLRLLDKTCSALIFRS---SDTASELLGDISLESPSLNNFFSEGLK 535
Query: 564 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNEL-INLAE 620
AAG++ Y++ CS GLW+S LA+AL+ AS + + SEIY ++ L ++L E
Sbjct: 536 AAGFDVYRKACSLGLWDSDLAEALEG--ASLEPATSTVSDHGSSEIYWNSSLKLDLKE 591
>gi|359494766|ref|XP_003634836.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 515
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/429 (61%), Positives = 329/429 (76%), Gaps = 5/429 (1%)
Query: 197 FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
F R V H + + ++ EALV SLRK++LG E++ SRP + +DVCSE QVQLVL
Sbjct: 88 FSVRASKVVAHPLSFSVNVGVEHEALVKSLRKLILGSEEYRSRPCVNLDVCSEHQVQLVL 147
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 316
++L +F D LVPL+IPAKGGGTQAVR +LTSS+EDKDLLKRELQ E EQNKRV GFREV
Sbjct: 148 EVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLLKRELQDLEEEQNKRVCGFREV 207
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG 376
IDLISASQKP+V+HNSLN+F FIHSKFL+PLPPNM+EF+CSLR+ FP V+DVN+L+K+IG
Sbjct: 208 IDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNMDEFMCSLRMVFPHVLDVNHLMKEIG 267
Query: 377 PVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKIT 436
P+KK+TN+SA + LK RFF PI+MEIP+QA+ NE KIHGHNV+KI L LCSILKIT
Sbjct: 268 PLKKVTNLSAAASCLKRRFFVPIDMEIPHQAS-NEDKIHGHNVLKISHLLANLCSILKIT 326
Query: 437 PDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRE 496
P+ I+S LASA+ YANIF+ ++++P + I+ WT+D RKVS E +VF+WGFR
Sbjct: 327 PEMIQSDGGHLASALEGYANIFHPHSTNTEDPIDGGIKVWTDDTRKVSSEGLVFIWGFRG 386
Query: 497 RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLRE 556
R+SAG LK +LQGSH VF+E F+VRMVD SCAIVVF + GLS TF ++S +SG LRE
Sbjct: 387 RMSAGGLKRLLQGSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISSNWISGLLRE 446
Query: 557 MVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETK---QSEIYLSN 613
MVS+GL+AAGYETY+ C G WE+ LAD+LDK L + SEA E K S+IY S
Sbjct: 447 MVSEGLRAAGYETYKNACRLGFWEADLADSLDKALEEPDHNSEADSEAKPTGPSQIYWSR 506
Query: 614 E-LINLAEL 621
+ +INL EL
Sbjct: 507 DSIINLDEL 515
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 76/89 (85%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
W +KQ+TK+NF+++L +K IS SDF+AVSLQ TGSFS+PWHRV FDTP+TAY KA+F
Sbjct: 14 WRVKQVTKSNFSQTLESLKPQISQSDFVAVSLQKTGSFSAPWHRVLPFDTPQTAYSKARF 73
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNF 115
AA++FQ+ QFA+CPF ++ASKV+A+P +F
Sbjct: 74 AADKFQVFQFAVCPFSVRASKVVAHPLSF 102
>gi|297742825|emb|CBI35579.3| unnamed protein product [Vitis vinifera]
Length = 6458
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 261/407 (64%), Positives = 322/407 (79%), Gaps = 5/407 (1%)
Query: 219 TEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGT 278
TEALV SLRK++LG E++ SRP + +DVCSE QVQLVL++L +F D LVPL+IPAKGGGT
Sbjct: 6053 TEALVKSLRKLILGSEEYRSRPCVNLDVCSEHQVQLVLEVLGEFFDDLVPLLIPAKGGGT 6112
Query: 279 QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
QAVR +LTSS+EDKDLLKRELQ E EQNKRV GFREVIDLISASQKP+V+HNSLN+F F
Sbjct: 6113 QAVRVILTSSEEDKDLLKRELQDLEEEQNKRVCGFREVIDLISASQKPVVSHNSLNEFAF 6172
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 398
IHSKFL+PLPPNM+EF+CSLR+ FP V+DVN+L+K+IGP+KK+TN+SA + LK RFF P
Sbjct: 6173 IHSKFLSPLPPNMDEFMCSLRMVFPHVLDVNHLMKEIGPLKKVTNLSAAASCLKRRFFVP 6232
Query: 399 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIF 458
I+MEIP+QA+ NE KIHGHNV+KI L LCSILKITP+ I+S LASA+ YANIF
Sbjct: 6233 IDMEIPHQAS-NEDKIHGHNVLKISHLLANLCSILKITPEMIQSDGGHLASALEGYANIF 6291
Query: 459 YSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF 518
+ ++++P + I+ WT+D RKVS E +VF+WGFR R+SAG LK +LQGSH VF+E F
Sbjct: 6292 HPHSTNTEDPIDGGIKVWTDDTRKVSSEGLVFIWGFRGRMSAGGLKRLLQGSHSVFSEEF 6351
Query: 519 NVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGL 578
+VRMVD SCAIVVF + GLS TF ++S +SG LREMVS+GL+AAGYETY+ C G
Sbjct: 6352 DVRMVDGSCAIVVFWQSGLSQTFLEAISSNWISGLLREMVSEGLRAAGYETYKNACRLGF 6411
Query: 579 WESALADALDKTLASHNCLSEAAYETK---QSEIYLSNE-LINLAEL 621
WE+ LAD+LDK L + SEA E K S+IY S + +INL EL
Sbjct: 6412 WEADLADSLDKALEEPDHNSEADSEAKPTGPSQIYWSRDSIINLDEL 6458
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 74/86 (86%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
W +KQ+TK+NF+++L +K IS SDF+AVSLQ TGSFS+PWHRV FDTP+TAY KA+F
Sbjct: 14 WRVKQVTKSNFSQTLESLKPQISQSDFVAVSLQKTGSFSAPWHRVLPFDTPQTAYSKARF 73
Query: 87 AAERFQILQFAICPFKLQASKVIAYP 112
AA++FQ+ QFA+CPF ++ASKV+A+P
Sbjct: 74 AADKFQVFQFAVCPFSVRASKVVAHP 99
>gi|357504877|ref|XP_003622727.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497742|gb|AES78945.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 513
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/496 (49%), Positives = 341/496 (68%), Gaps = 33/496 (6%)
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
ISYLS AQES K+R+G KSSS P +VADTVFIER+RSR+KHW+N C +S
Sbjct: 20 ISYLSRAQESVAKIRLGTSSPSLGVMKSSSPP--TVADTVFIERIRSRIKHWRNTCKNSG 77
Query: 217 IKT------------------------------EALVTSLRKIVLGGEQFGSRPSMTIDV 246
KT + L+ S+R I+ G EQF RP + +DV
Sbjct: 78 TKTSKDGKKIFSKFCTMRFFLGSPFILYHSFCADELINSIRNIISGSEQFKLRPCLNVDV 137
Query: 247 CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQ 306
CS+RQVQL+L+M+ DFSD L+PL+IP+KGG TQAVR VLT S EDK++L+REL++ E E+
Sbjct: 138 CSDRQVQLILQMVVDFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEVLERELRSLEEEE 197
Query: 307 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
+K++RGFREVIDLISASQKP+++HN LND T IHSKF+APLP ++EF+ SL FP+VI
Sbjct: 198 SKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPSEVDEFVSSLCKIFPKVI 257
Query: 367 DVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLF 426
DVNYLLK G +KK+TNI ++Y+ F A +EMEIP+Q N+GKI G + +++ LF
Sbjct: 258 DVNYLLKKSGTMKKVTNIRNALSYMNTHFLALVEMEIPDQDTINKGKIDGLDALRLSYLF 317
Query: 427 GKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPT-NEEIRGWTNDKRKVSC 485
KLCS+LKI+P ES + LA + + N+F+S + QE + NE++ WTN+ RK +C
Sbjct: 318 MKLCSVLKISPVVTESGNRQLAPQLEDFTNVFHSCSANIQESSCNEDVSVWTNNTRKANC 377
Query: 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVM 545
E +VFLWGF+ ++AG+LK++L+ SH++F E F+V+ VD+SCA VVF +PGLS F NVM
Sbjct: 378 EHLVFLWGFKFGMTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNVM 437
Query: 546 NSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETK 605
N + +SG L+E+VSDGL+ GYETY+ +C GLWE LA++L+K+L ++ E K
Sbjct: 438 NDEQISGGLKELVSDGLRVTGYETYRTMCRLGLWEIDLAESLEKSLECSLNDTDIHSERK 497
Query: 606 QSEIYLSNELINLAEL 621
+ ++ +INL +L
Sbjct: 498 PEIPWCNDNVINLDDL 513
>gi|115476612|ref|NP_001061902.1| Os08g0440200 [Oryza sativa Japonica Group]
gi|113623871|dbj|BAF23816.1| Os08g0440200 [Oryza sativa Japonica Group]
Length = 291
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 148/272 (54%), Positives = 199/272 (73%), Gaps = 15/272 (5%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK NF E++ ++ H+ + D++A++ Q TG+ + W R DTPETAYLKAK AAE
Sbjct: 15 QVTKRNFAEAVQDLAAHVEACDYVAIAAQRTGA-PTGWRRALPVDTPETAYLKAKLAAES 73
Query: 91 FQILQFAICPFKLQA---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
FQ L FAICPF++ A S ++AYPYNFHLFPRDEL++GMP+YSF+CQ+SYL++MA GF
Sbjct: 74 FQPLHFAICPFRVDATSPSTLVAYPYNFHLFPRDELQLGMPAYSFSCQSSYLSSMAHSGF 133
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN CIYDGISYLS AQES + R+ P H + SSSP+ S+AD+VF+ R++SR++H
Sbjct: 134 DFNMCIYDGISYLSRAQESLARERIFIP----HVRQLSSSPSTSIADSVFLTRIKSRIEH 189
Query: 208 WKNA----CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263
W+ C +D +LV +LR+++LG E +GSRPS +IDVCS+RQVQLVL+ S
Sbjct: 190 WRKGYTKPCKTAD---GSLVNTLRQLILGSESYGSRPSFSIDVCSDRQVQLVLEAANHIS 246
Query: 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL 295
D LVPL++P K G +AVR + TSS EDK+LL
Sbjct: 247 DDLVPLVVPDKAGTARAVRVIFTSSPEDKNLL 278
>gi|449461041|ref|XP_004148252.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
gi|449524565|ref|XP_004169292.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Cucumis
sativus]
Length = 700
Score = 261 bits (667), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 183/623 (29%), Positives = 308/623 (49%), Gaps = 80/623 (12%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +TK+NF +LSE+++H+ ++DF+A+ L+ TG S+PW + FD + YL K
Sbjct: 39 FPLKNVTKSNFEAALSELRSHVRAADFVAIDLEMTGITSAPWRDLLEFDRFDVRYLNVKD 98
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F +LQF ICPF+ ++K +A+P+NF +FPR E+++ PS F CQT+ + +AK
Sbjct: 99 SAEKFAVLQFGICPFRWDSAKNSFVAHPHNFFIFPRHEIEVDGPSSEFLCQTTSMEFLAK 158
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM----GNPM--AVDHATKSSSSPALSVADTVFI 198
FDFN CIY+GISYLS A E + R+ G+ M A + T + + D +F
Sbjct: 159 YQFDFNACIYEGISYLSRAHEDAARKRLNFAYGDEMLDASSNVTNVMDKKRVGIPDVLFK 218
Query: 199 ERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ-------------FGSRPSMTID 245
ER+++R+ W++ + S R + G++ F RP++T+
Sbjct: 219 ERMKNRLHEWRDR-----------LLSERNMEFQGQEGSNDHKRQFQTIFFKMRPALTLS 267
Query: 246 VCSERQVQLV-LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+ Q++L+ L + + F D+ ++ Q V V S +DK+LL +E+ +
Sbjct: 268 DFTSHQIKLIQLVIKKHFEDLCFVVVNDGNADLQQLV--VFVDSRDDKELLMQEVNRDQK 325
Query: 305 EQN----KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
E N + GFR VIDL+S+ +K +V HN D IH KF+ LP EF+ SL
Sbjct: 326 EVNEMKIQSAIGFRHVIDLLSSEKKLIVGHNCFLDMLHIHRKFIGSLPSTTEEFVSSLGK 385
Query: 361 AFPQVIDVNYLLKDIGPVKKMTNISAT------------IAYLKNRFFA-----PIEMEI 403
FP ++D LL + + N S T IA+ R A +E+++
Sbjct: 386 HFPYIMDTKILLNGNNILIRRMNKSNTSLSSAFGLLCPHIAFSSQRVSAWNSGVQVEVQV 445
Query: 404 PN--QANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAI-NRYANIF 458
+ + N G H G++ +F + C ++ I +S++ L + I ++ N
Sbjct: 446 DDLRSSKWNSGDTHEAGYDAFMTGCVFAQACDLMGIDFVDRSTSENLLGNEILQKHINRL 505
Query: 459 YSLPGSSQ----EPTNEEIRGWTNDKR--KVSCEDVVFLWGFRERISAGILKNMLQGSHE 512
Y N+ +T K KVS +++V +WGF ++A +K + +
Sbjct: 506 YLSWARGDIIDLSTGNQVTESFTTRKHRAKVSFQNIVLIWGFPTNLTARKIKACIS---K 562
Query: 513 VFAEA--FNVRMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVS-DGL 562
F + +V +D S V F KP + + F ++ + +V PL E+
Sbjct: 563 AFGQTNVSSVNHLDESAVFVQFTKPEMVSEFLDLKEKLEKRDDPLSVLHPLTELFDVRTT 622
Query: 563 KAAGYETYQRVCSSGLWESALAD 585
AAGYE Y+++CSS + + +D
Sbjct: 623 HAAGYEAYKKICSSPMSKHLFSD 645
>gi|225461941|ref|XP_002266069.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Vitis vinifera]
Length = 734
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 316/621 (50%), Gaps = 73/621 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+ +K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 38 FALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKD 97
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 98 SAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAK 157
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVF 197
FDFN CIY+GISYLS QE+ + +R N D + + +P +SVAD +F
Sbjct: 158 YQFDFNACIYEGISYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLF 216
Query: 198 IERVRSRVKHW-KNACTDSDIKTEALVTS-LRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
ER+++R W K D ++ L TS K F RP++ ++ + Q++L+
Sbjct: 217 SERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLI 276
Query: 256 -LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR-- 311
L + + F D++ I + G G+ + V SD DK+LL +E++ E +++
Sbjct: 277 QLVIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTA 333
Query: 312 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
GFR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID
Sbjct: 334 VGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKI 393
Query: 371 LLKDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANEN 410
LL +K + T++S A L KN F P +E+E+ +N N
Sbjct: 394 LLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWN 453
Query: 411 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS- 465
G H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 454 SGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDI 513
Query: 466 -QEPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF 518
T I T N KR K+ ++V +WGF ++S+ ++ E ++AF
Sbjct: 514 IDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIR-------ECISKAF 566
Query: 519 N------VRMVDRSCAIVVFGKPG-------LSNTFKNVMNSKAVSGPLREMVSDG-LKA 564
+ +D + V F KP L T + + + +V PL ++ G A
Sbjct: 567 GPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCA 626
Query: 565 AGYETYQRVCSSGLWESALAD 585
A YETY+ +CSS + + AD
Sbjct: 627 ASYETYKEICSSPISKVMFAD 647
>gi|296089929|emb|CBI39748.3| unnamed protein product [Vitis vinifera]
Length = 715
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 195/621 (31%), Positives = 316/621 (50%), Gaps = 73/621 (11%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+ +K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 38 FALKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKD 97
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 98 SAEKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAK 157
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVF 197
FDFN CIY+GISYLS QE+ + +R N D + + +P +SVAD +F
Sbjct: 158 YQFDFNACIYEGISYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLF 216
Query: 198 IERVRSRVKHW-KNACTDSDIKTEALVTS-LRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
ER+++R W K D ++ L TS K F RP++ ++ + Q++L+
Sbjct: 217 SERMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLI 276
Query: 256 -LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR-- 311
L + + F D++ I + G G+ + V SD DK+LL +E++ E +++
Sbjct: 277 QLVIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTA 333
Query: 312 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
GFR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID
Sbjct: 334 VGFRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKI 393
Query: 371 LLKDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANEN 410
LL +K + T++S A L KN F P +E+E+ +N N
Sbjct: 394 LLNTNNVLKHLMKNGSTSLSKAFASLCPQIASSSKNSGLAFQPWVEVEVQVDDMRSSNWN 453
Query: 411 EGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS- 465
G H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 454 SGAKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDI 513
Query: 466 -QEPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF 518
T I T N KR K+ ++V +WGF ++S+ ++ E ++AF
Sbjct: 514 IDLGTGNRIAATTVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIR-------ECISKAF 566
Query: 519 N------VRMVDRSCAIVVFGKPG-------LSNTFKNVMNSKAVSGPLREMVSDG-LKA 564
+ +D + V F KP L T + + + +V PL ++ G A
Sbjct: 567 GPISVTTIYHLDETAVFVQFSKPELVADFLVLKETLETIQDPISVLHPLSVLLEGGNTCA 626
Query: 565 AGYETYQRVCSSGLWESALAD 585
A YETY+ +CSS + + AD
Sbjct: 627 ASYETYKEICSSPISKVMFAD 647
>gi|413922374|gb|AFW62306.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
gi|413922375|gb|AFW62307.1| hypothetical protein ZEAMMB73_533831 [Zea mays]
Length = 244
Score = 258 bits (658), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 123/237 (51%), Positives = 170/237 (71%), Gaps = 9/237 (3%)
Query: 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
KQ+T+ NF E++ E++ H+ + D++AV+ Q TG+ + W R DT ETAYLKAK AAE
Sbjct: 12 KQVTRQNFAEAVLELRAHLEACDYVAVAAQKTGA-PTGWRRALPVDTAETAYLKAKLAAE 70
Query: 90 RFQILQFAICPFKLQ---ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
FQ LQ A+CPF+ + S ++AYPYNFHLFPRDEL++GMPSYSF+CQ YL+ +A +G
Sbjct: 71 SFQPLQIAVCPFRQRNSYPSTLVAYPYNFHLFPRDELQLGMPSYSFSCQPCYLSTIANDG 130
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN CIYDGISYLS QES + ++ P + SSP SVAD+VF+ R++SR+
Sbjct: 131 FDFNMCIYDGISYLSRVQESLAREKIFTP----RPHQLLSSPNTSVADSVFMNRIKSRIV 186
Query: 207 HWKNACTDSDIKTE-ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+W+ D K + +LV+SL +++LG E +GSRPSM+IDVCS+RQVQLVL+ + +
Sbjct: 187 NWRKRYADPSKKHDGSLVSSLSRLILGAETYGSRPSMSIDVCSDRQVQLVLEAVNPY 243
>gi|224061228|ref|XP_002300380.1| predicted protein [Populus trichocarpa]
gi|222847638|gb|EEE85185.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 172/615 (27%), Positives = 308/615 (50%), Gaps = 64/615 (10%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +++++K H+ ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 25 FPLKHVTQSNFETAVADLKTHLKAADFVAIDLEMTGVTSAPWRESLEFDRFDVKYLKVKD 84
Query: 87 AAERFQILQFAICPFKLQASKV--IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++Q +CPF+ ++ IA+P+NF +FPR E+ + SY F CQT+ + +AK
Sbjct: 85 SAEKFAVVQLGVCPFRWDPLRLSFIAHPHNFFIFPRQEVPIDSSSYEFLCQTTSIDFLAK 144
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFN CI G+SYLS QE + + + ++ P +S+ D +F ER+++R
Sbjct: 145 YHFDFNVCIRQGVSYLSRGQEDEALRLLNLRYENELSEQARDVPLVSITDILFSERMKNR 204
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVL--GGEQFGS-----RPSMTIDVCSERQVQLVLK 257
++ W+ D +K + + L L +QF + RP+++++ + RQ++L+
Sbjct: 205 LREWR----DGLLKDTSGGSQLEGSFLNDSNQQFQNIFYKMRPALSLNGFTSRQLRLIQS 260
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE-LQTFEFEQNKRVR---GF 313
+ + L + + + +Q + V T S+ D+DLLK+E + + + +++ GF
Sbjct: 261 VTKKHFKDLASVRVEGESSCSQQL-VVYTDSESDRDLLKKEVMDDYRRQAEMKIKAAIGF 319
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
R VIDL+S+ +K +V HN D IHSKFL PLP EF+ S+ FP +ID LL
Sbjct: 320 RHVIDLLSSEKKLIVGHNCFLDLAHIHSKFLGPLPLEAEEFVYSVNKCFPYIIDTKILLN 379
Query: 374 DIGPVKKMTNISAT------------IAYLKNR-----FFAPIEMEIP----NQANENEG 412
+K+ S T IA+ F + +++E+ ++ G
Sbjct: 380 TNNILKQRMKKSKTSLSSAFLSLCPQIAFASKESCNLTFSSSVKVEVQVDDIRSSSWISG 439
Query: 413 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYANIFY-------SLP 462
H G++ +F + C++L I S++ + + ++AN+ Y +
Sbjct: 440 VKHEAGYDAFMTGCVFAQACNLLGIDFKLYSPSENLACNERLQKHANLLYLSWINGDIID 499
Query: 463 GSSQEPTNEEIRGWTNDKRKVSC--EDVVFLWGFRERISAGILKNMLQGSHEVFA--EAF 518
S+ T E +R K + E++V +WGF ++ ++K+ + +VF
Sbjct: 500 LSTGHRTAESLRCRDLKKSQTGILFENIVLIWGFPSKLKTAVIKDRIS---KVFGPTSVT 556
Query: 519 NVRMVDRSCAIVVFGKPGL-------SNTFKNVMNSKAVSGPLREMVSDG-LKAAGYETY 570
++ +D + V F K L T + ++ +V PL ++ G AA YETY
Sbjct: 557 SICRLDETAVFVQFSKLKLVADFLVVKETLERSNDAFSVLHPLSTILEGGNTCAASYETY 616
Query: 571 QRVCSSGLWESALAD 585
+ +CSS + AD
Sbjct: 617 KDICSSPTSKLLFAD 631
>gi|147799285|emb|CAN76999.1| hypothetical protein VITISV_007764 [Vitis vinifera]
Length = 720
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 189/608 (31%), Positives = 308/608 (50%), Gaps = 65/608 (10%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+K +TK+NF SL++++ H+ +DF+A+ L+ TG S+PW FD + YLK K +A
Sbjct: 40 LKNVTKSNFESSLADLRRHVRDADFVAIDLEMTGVTSAPWRESFEFDRFDVQYLKVKDSA 99
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E+F ++QF +CPF+ +S+ +A+P+NF++FPR EL + PSY F CQT+ + +AK
Sbjct: 100 EKFAVVQFGVCPFRWDSSRHCFVAHPHNFYVFPRQELPVDGPSYEFLCQTTSIDFLAKYQ 159
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------KSSSSPALSVADTVFIE 199
FDFN CIY+G+SYLS QE+ + +R N D + + +P +SVAD +F E
Sbjct: 160 FDFNACIYEGVSYLSREQENEM-LRCLNSECDDEMSLLWRNMKEVRDTPLVSVADVLFSE 218
Query: 200 RVRSRVKHW-KNACTDSDIKTEALVTS-LRKIVLGGEQFGSRPSMTIDVCSERQVQLV-L 256
R+++R W K D ++ L TS K F RP++ ++ + Q++L+ L
Sbjct: 219 RMKNRFNEWRKELLQDRKGGSQFLETSNDMKQQFQTIFFKMRPALILNGFTAHQLRLIQL 278
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQT-FEFEQNKRVR---G 312
+ + F D++ I + G G+ + V SD DK+LL +E++ E +++ G
Sbjct: 279 VIKKHFKDLVY---IRSSGDGSYSELIVYIDSDNDKNLLMKEVKDGLRREAEMKIKTAVG 335
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
FR VIDL+S+ QK +V HN L D I++KF PLP +F+ S+ FP +ID LL
Sbjct: 336 FRHVIDLLSSEQKLIVGHNCLLDIAHIYNKFFGPLPLTAEDFVSSIHKYFPYMIDTKILL 395
Query: 373 KDIGPVKKM-----TNISATIAYL--------KNR--FFAP-IEMEIP----NQANENEG 412
+K + T++S + L KN F P +E+E+ +N N G
Sbjct: 396 NTNNVLKHLMKNGSTSLSKAFSSLCPQIASSSKNSGLAFKPWVEVEVQVDDMRSSNWNSG 455
Query: 413 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASA-INRYAN-IFYSLPGSS--Q 466
H G++ +F + CS L I SS + + + ++ N +++S
Sbjct: 456 AKHEAGYDAFMTGCVFAQACSNLGIDFKKHSSSANLAHNKNLQKHVNHLYFSWVNGDIID 515
Query: 467 EPTNEEIRGWT---NDKR---KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV 520
T I N KR K+ ++V +WGF ++S+ ++ + +VF +V
Sbjct: 516 LSTGNRIAATAVCYNLKRRYPKILFSNIVIVWGFPSQLSSKKIRECIS---KVFG-PISV 571
Query: 521 RMV---DRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSG 577
M+ D + V F KP L F + S+ + L YETY+ +CSS
Sbjct: 572 TMIYHLDETAVFVQFSKPELVADFLFCIPSQYC------WKVETLVLPSYETYKEICSSP 625
Query: 578 LWESALAD 585
+ + AD
Sbjct: 626 ISKVMFAD 633
>gi|356569615|ref|XP_003552994.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 714
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 175/641 (27%), Positives = 293/641 (45%), Gaps = 59/641 (9%)
Query: 1 MVPKFKPSPLRIRSFC-----TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIA 55
M P PSP R+F T Q +P K +T NF SL+E++ H+ +SDF+A
Sbjct: 1 MKPHKLPSPALSRAFARALGSATTATQCGVAFPSKTVTTANFEPSLAELRRHVRTSDFVA 60
Query: 56 VSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK--VIAYPY 113
+ L+ TG S+PW + FD + YLK + +A +F ++QF +CPF+ S +AYP+
Sbjct: 61 IDLEMTGVTSAPWRELLEFDRSDVRYLKVRDSATKFAVVQFGVCPFRWDPSNHSFVAYPH 120
Query: 114 NFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMG 173
NF++FPR +L P F CQT+ + +AK FDFN CI++GISYLS QE +
Sbjct: 121 NFYVFPRQQLAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQERKALRSLN 180
Query: 174 NPM-----AVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRK 228
+ + P LS AD +F R++++ W++ + + +
Sbjct: 181 STYDSEWSDIGKLKDVRDIPLLSAADILFTARMKNKFSEWRDGLFQEQNQEDQIQGISND 240
Query: 229 IVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS 288
F P++ ++ + Q++L+ ++ L + + ++ G+Q +
Sbjct: 241 SKFQVTFFEMHPALRLNRFTSHQLKLIQLLIRKHFKDLSYVSVNSEASGSQQLVVYTDLK 300
Query: 289 DEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLA 345
DE LLK+ + + +++ GFR VIDL+S+ QK +V +N D ++SKF+
Sbjct: 301 DELNLLLKKVKEENHRAEEMKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKFIG 360
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYLLK-DIGPVKKMTNISATIAYLKNRFFAPI----- 399
PLP EF+ S+ FP ++D LL ++ +KM ++A F I
Sbjct: 361 PLPGTPEEFVASVSKCFPHIVDTKILLSTNLMFQEKMKRSRKSLASAFTSFCPQIAAGSR 420
Query: 400 --------------EMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESS 443
E++ + + G H G++ +F +LCS L I +SS
Sbjct: 421 STDLGSLSHVKVNVEVDDSRSCSWSPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLHDSS 480
Query: 444 DDF-LASAINRYANIFYSL--------PGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGF 494
L + +Y N Y + + + +R T K+ E++V +WGF
Sbjct: 481 KPLALNEKLQKYVNRLYLSWMHRDIIDLNTGNKVADSSLRSLTKRYPKIMFENIVIIWGF 540
Query: 495 RERISAGILKNMLQGSHEVFA--EAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSG 552
++ A ++ + +VF +V +D + A V F K L + F V +S SG
Sbjct: 541 SSKLKANEIRECIS---KVFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLVKDSLERSG 597
Query: 553 -------PLREMVSDG-LKAAGYETYQRVCSSGLWESALAD 585
PL +++ G A Y+TY+ +C S L E AD
Sbjct: 598 GAISVLHPLSKLLEGGNTCGANYDTYREICGSSLSEGLFAD 638
>gi|302772366|ref|XP_002969601.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
gi|300163077|gb|EFJ29689.1| hypothetical protein SELMODRAFT_410403 [Selaginella moellendorffii]
Length = 648
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 300/636 (47%), Gaps = 76/636 (11%)
Query: 12 IRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRV 71
IR FC+ V+ + H IT+ NF + +K + +DF+A+ L+ +G S+PW +
Sbjct: 18 IRFFCSAVVRDSSH-----AITRQNFGAAFQRLKGLLRDADFVAMDLEMSGVHSAPWRKS 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPS 129
DT ET Y + +AE+F +LQ +C F+ +SK + +P+NF LFPR+EL +
Sbjct: 73 MELDTLETRYHNVRDSAEKFSLLQCGLCLFRYDQASSKFLGHPFNFFLFPRNELVL---E 129
Query: 130 YSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPA 189
F CQTS L +AK FDFN CIY+GISYLS +E ++ + P
Sbjct: 130 RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKK-------GEDELPE 182
Query: 190 LSV---ADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDV 246
+S+ +D +F ERVR +V W+ + + K + +S R + E PS+ I+V
Sbjct: 183 VSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGRSSMPDDE--APLPSLVINV 240
Query: 247 CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK-----DLLKRELQT 301
+RQ +LVLK + D LVP+I + TQ V+ + T S E K DL K +L
Sbjct: 241 SDKRQAKLVLKAVSSNFDDLVPMIEGNEKEATQ-VKVIYTGSSEHKIALQADLDKAKLDL 299
Query: 302 FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
E++ + V GFR+VID IS S+KP+V HN + D I++KF+ PLP N + F +
Sbjct: 300 MEYDVMEAV-GFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHEL 358
Query: 362 FPQVIDVNYLLKDIGPVKKMTNISATIAYL---------KNRFFAPIEMEIPN---QANE 409
FP VID Y+LK + T++ +Y K + + + +EI + + ++
Sbjct: 359 FPAVIDTKYMLKVLRTSISTTSLYPVYSYYFGEDAKKNTKMKAHSTVNVEIADGFHKYSD 418
Query: 410 NEGKIH-GHNVVKICQLFGKLCSILKITPDAIES-SDDFL--ASAINRYANIFY------ 459
E K G + +F +L + P + S L AI+ ++N+ Y
Sbjct: 419 AELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMGWAGH 478
Query: 460 ---------SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGS 510
GS P E + R+ + + V +W S+ L+ +++
Sbjct: 479 FVLDLKTGKEAKGSKALPERE-----SYSARRPASDAAVIVWSQDPVGSSRQLQKLVKSC 533
Query: 511 HE--VFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVM-----NSKAVSGPLREMVSDGLK 563
E F+ V V + A + F S F + N K ++ + S GL+
Sbjct: 534 FEETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTNRKKLNTIAARLSSSGLQ 593
Query: 564 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
A + T++++C S L + DA+ S NC S+
Sbjct: 594 GARFGTFEKLCKSELSTFNIGDAIQ----SINCFSD 625
>gi|240254280|ref|NP_175983.5| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|60390594|sp|Q9LG26.2|PARN_ARATH RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease; Short=AtPARN;
AltName: Full=Protein ABA hypersensitive germination 2
gi|65736526|dbj|BAD98514.1| poly(A)-specific ribonuclease [Arabidopsis thaliana]
gi|332195190|gb|AEE33311.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 689
Score = 231 bits (590), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 175/657 (26%), Positives = 320/657 (48%), Gaps = 84/657 (12%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERV 201
FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARM 215
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQVQLV 255
+ W++ + + +I G Q RP++++ + Q++++
Sbjct: 216 EKLLNEWRSGL----LHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVL 271
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---- 311
+L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 272 NSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKI 326
Query: 312 ----GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 368 VNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQ 406
LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 387 TKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRC 445
Query: 407 ANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYSLPG 463
+N N G H G++ +F + C+ L DDF + + +Y N Y L
Sbjct: 446 SNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY-LSW 504
Query: 464 SSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-- 518
+ + + D +VS E++V +W F ++ A +G E +AF
Sbjct: 505 TRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKAFGS 557
Query: 519 ----NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LKAAG 566
+V VD S V+F L F K + S +V PL +++ G AA
Sbjct: 558 ASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAAD 617
Query: 567 YETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 617
YE Y+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 618 YEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 674
>gi|168026131|ref|XP_001765586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683224|gb|EDQ69636.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 487
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 201/363 (55%), Gaps = 36/363 (9%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +T+ NF ESL +++ ++ +DF+AV L+ TG S+ W R D+ ET Y K +A
Sbjct: 7 MANVTRRNFVESLEQLRGQLAGADFVAVDLEMTGVESTKWRRNLELDSYETRYQNLKHSA 66
Query: 89 ERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E+F + Q +CPFK + K +AYPYNF +FPR+EL++ +P+ SF QT+ L + K
Sbjct: 67 EKFAVWQCGVCPFKWDEAHNKWVAYPYNFFIFPRNELQLELPARSFFAQTTSLEFLTKHR 126
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGN-------PMAVDHATKSSSSPALSVADTVFIE 199
FDFN CIYDGISYLS QE+ +V MG+ P V + SS P D F+E
Sbjct: 127 FDFNACIYDGISYLSHEQEAVARVLMGSVSVKQNFPSGVHN---SSEIPLTKPGDVAFVE 183
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
++R+++ W++ + K + + +L RPS+ IDV S Q +LV +++
Sbjct: 184 KIRTQIGRWRDELLFNRQKWQVVNENL------------RPSLNIDVTSHYQSRLVQQII 231
Query: 260 E-DFSDVLVPLIIPAKGGGTQ---AVRAVLTSSDED-----KDLLKRELQTFEFEQNKRV 310
+ F D++ + A+G G +R + S ED ++L E E + V
Sbjct: 232 KTHFPDLVAA--VNARGNGPHDRIRIRVIYVSPKEDMSKVIQELADEERNALETRVSNAV 289
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
GFR+V+D I+ + P+V HN + D T I+SKF+ PLP EF SLR FP VID Y
Sbjct: 290 -GFRKVLDAIAEAGLPVVGHNCILDMTHIYSKFVGPLPATSAEFSSSLRQQFPCVIDTKY 348
Query: 371 LLK 373
LL+
Sbjct: 349 LLR 351
>gi|356524370|ref|XP_003530802.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Glycine max]
Length = 718
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 178/653 (27%), Positives = 298/653 (45%), Gaps = 73/653 (11%)
Query: 1 MVPKFKPSP------LRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFI 54
M P PSP R S T T P +P K +T NF SL+E+++H+ SDF+
Sbjct: 1 MKPHKLPSPSLSRALARALSSATITTHCGPA-FPSKTVTTANFEPSLAELRHHVRCSDFV 59
Query: 55 AVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK--VIAYP 112
A+ L+ TG S+PW FD + YLK + +A +F ++QF +CPF+ S +A+P
Sbjct: 60 AIDLEMTGVTSAPWRESLAFDRSDVRYLKVRDSAAKFAVVQFGVCPFRWDPSNHSFVAHP 119
Query: 113 YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM 172
+NF++FPR E+ P F CQT+ + +AK FDFN CI++GISYLS QE +
Sbjct: 120 HNFYVFPRQEIAGLGPCDEFLCQTTSMDFLAKYQFDFNACIHEGISYLSREQEREALRSL 179
Query: 173 GNPM------AVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSL 226
+ + P LS AD +F R++++ W++ + + +
Sbjct: 180 NSTYDSSEWSDIGKLKNVRDIPLLSTADILFTARMKNKFGEWRDGLFQEQNQEDQIQGIS 239
Query: 227 RKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLT 286
+ F P++ ++ + Q++L+ ++ L + + ++ G+Q +
Sbjct: 240 KDSKFQVTFFEMHPALRLNGFTSHQLKLIQLVIRKHFKDLSYVSVNSETSGSQQLVVYTD 299
Query: 287 SSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQKPLVAHNSLNDFTFIHSKF 343
S DE LLK+ + + K+++ GFR VIDL+S+ QK +V +N D ++SKF
Sbjct: 300 SKDELNLLLKKVKEENHRAEEKKIQAAVGFRHVIDLLSSEQKLIVGYNCFLDIAHVYSKF 359
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYLLK-DIGPVKKMTNISATIAYLKNRFFAP---- 398
+ PLP + +EF+ S+ FP ++D LL ++ +KM ++A F P
Sbjct: 360 IGPLPGSPDEFVASVNKCFPHIVDTIILLNTNLMFQEKMKRSRKSLASAFT-LFCPQIAA 418
Query: 399 ----------------IEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAI 440
+E++ + N G H G++ +F +LCS L I
Sbjct: 419 GSRSTDLGSLSHVKVDVEVDGSRSCSWNPGGKHEAGYDAFMTGCIFAQLCSDLGIDFKLR 478
Query: 441 ESSDDF-LASAINRYANIFY---------SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+SS+ L + +Y N Y L ++ + + E++V
Sbjct: 479 DSSNQLALNEKLQKYVNRLYLSWIHGDIIDLNTGNKVADSSPSHSLKKRYPTILFENIVI 538
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAF------NVRMVDRSCAIVVFGKPGLSNTFKNV 544
+WGF ++ A ++ E ++AF +V +D + A V F K L + F V
Sbjct: 539 IWGFPSKLKANEVR-------ECISKAFGPTSVVSVFHLDATAAFVQFSKTELVSDFLLV 591
Query: 545 MNSK-------AVSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDK 589
+S +V PL +++ G AA Y+TY +C S L E AD K
Sbjct: 592 KDSLERSDGAISVLHPLSKLLEGGNTCAANYDTYNEICGSPLSEGLFADQAKK 644
>gi|302774905|ref|XP_002970869.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
gi|300161580|gb|EFJ28195.1| hypothetical protein SELMODRAFT_451150 [Selaginella moellendorffii]
Length = 648
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 299/636 (47%), Gaps = 76/636 (11%)
Query: 12 IRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRV 71
IR FC+ V+ + H IT+ NF + +K + +DF+A+ L+ +G S+PW +
Sbjct: 18 IRLFCSAVVRDSSH-----AITRQNFGAAFQRLKGLLREADFVAMDLEMSGVHSAPWRKS 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPS 129
DT ET Y + +AE+F +LQ +C F+ +SK + +P+NF LFPR+EL +
Sbjct: 73 MELDTLETRYHNVRDSAEKFSLLQCGLCLFRYDQASSKFLGHPFNFFLFPRNELVL---E 129
Query: 130 YSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPA 189
F CQTS L +AK FDFN CIY+GISYLS +E ++ + P
Sbjct: 130 RDFLCQTSSLEFLAKHHFDFNACIYNGISYLSRKEEGKLRALLAKK-------GEDELPE 182
Query: 190 LSV---ADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDV 246
+S+ +D +F ERVR +V W+ + + K + +S R + E PS+ I+V
Sbjct: 183 VSMRKTSDLIFSERVRLQVGLWRASKIMAKHKAKQEESSGRSSMPDDE--APLPSLVINV 240
Query: 247 CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK-----DLLKRELQT 301
+RQ +LVLK + D LVP+I + TQ V+ + T S E K DL K +L
Sbjct: 241 SDKRQAKLVLKAVSSNFDDLVPMIEDNEKEATQ-VKVIYTGSSEHKIALQADLDKAKLDL 299
Query: 302 FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
E + + V GFR+VID IS S+KP+V HN + D I++KF+ PLP N + F +
Sbjct: 300 MECDVMEAV-GFRQVIDAISESKKPIVGHNCVLDLAHIYNKFIGPLPDNYSGFCNVIHEL 358
Query: 362 FPQVIDVNYLLKDIGPVKKMTNISATIAYL---------KNRFFAPIEMEIPN---QANE 409
FP VID Y+LK + T++ +Y K + + + +EI + + ++
Sbjct: 359 FPAVIDTKYMLKVLRTSISTTSLYPVYSYYFGEDAKKNTKTKAHSTVNVEIADGFHKYSD 418
Query: 410 NEGKIH-GHNVVKICQLFGKLCSILKITPDAIES-SDDFL--ASAINRYANIFY------ 459
E K G + +F +L + P + S L AI+ ++N+ Y
Sbjct: 419 AELKHEAGFDAYMTGAIFAQLWRTVVSNPTEFYALSKKILRGTHAISEFSNLLYMGWAGH 478
Query: 460 ---------SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGS 510
GS P E + R+ + + V +W S+ L+ +++
Sbjct: 479 FVLDLKTGKEAKGSKALPERE-----SYSARRPASDAAVIVWSQDPVGSSRQLQKLVKSC 533
Query: 511 HE--VFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS-----KAVSGPLREMVSDGLK 563
E F+ V V + A + F S F + S K ++ + S GL+
Sbjct: 534 FEETQFSSEVEVIPVSENAAFLAFKSLRSSEEFSQALESIKTKRKKLNTIAARLSSSGLE 593
Query: 564 AAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
A + T++++C S L + DA+ S NC S+
Sbjct: 594 GARFGTFEKLCKSELSTFNIGDAIQ----SINCFSD 625
>gi|242076112|ref|XP_002447992.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
gi|241939175|gb|EES12320.1| hypothetical protein SORBIDRAFT_06g019420 [Sorghum bicolor]
Length = 719
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 172/625 (27%), Positives = 302/625 (48%), Gaps = 74/625 (11%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ V L+ +G S+PW FD + YLK + +A
Sbjct: 45 VKQVTRGNMAEALEKLRGRVREAAFVGVDLEMSGVTSAPWRDTFEFDRADVRYLKLRDSA 104
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 105 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIDFLAKYQ 164
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIER 200
FDFNTC +GISYLS AQE + AT S++S P S +D +F ER
Sbjct: 165 FDFNTCFREGISYLSRAQEEEALQKFNTLHHGQTATSSTNSEEDGDIPLKSASDILFTER 224
Query: 201 VRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQLV 255
++ K W++ + L +++ G QF + RP++ ++ S Q++L+
Sbjct: 225 MKMNFKEWRDVIVSKPMVDNHLSVNIK---CGAGQFQTVFFKMRPAIMLNGFSSHQLKLI 281
Query: 256 LKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFE-QNKRVR-- 311
++L ++F D++ + T + V + +DED+ LL +++Q + + + +RV+
Sbjct: 282 QQVLRKNFRDLV--FVCTFGEDDTSEKKVVYSDTDEDRMLLMKDVQEDQLKNREERVKSA 339
Query: 312 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
G R VIDL+S+ +K ++ H+ D ++SKF+ PLP ++ EF S FP + D +
Sbjct: 340 IGIRHVIDLLSSERKLIIGHSCFLDIAQVYSKFVGPLPSSIKEFALSFHKIFPHIADTRH 399
Query: 371 LLKDIGPVKKMT-----NISATIAYL---------KNRFFAPIEMEIPNQANEN----EG 412
LL V+++ ++S+ + L K +P+ +E+ + G
Sbjct: 400 LLSVNQAVQELMKQKSKSLSSAFSLLCPASYSSAEKASSHSPVTIEVEGDETTSSSFISG 459
Query: 413 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDD------------FLASAINRYANIF 458
H G++ +F +LC+ L I + DD FL+ + N I
Sbjct: 460 AKHEAGYDAYMTGCIFAQLCAYLGIKFEQFSPLDDLATNTRLQKHINFLSPSWNSGTVID 519
Query: 459 YSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA- 517
S +P G+ +++V +WGF ++ +K+ + +VF
Sbjct: 520 LSTGMERPDP------GYMRRYPAAVYDNIVVIWGFMSKVRPKEIKDCI---CKVFGSGS 570
Query: 518 -FNVRMVDRSCAIVVFGKPGLSNTFKNVMNS--KAVSG-----PLREMVSDG-LKAAGYE 568
V +D + A+V F K N F ++ ++ +A S PL ++ G +AA Y+
Sbjct: 571 VTTVFSIDSTAALVQFKKQESVNDFLDLKSALERADSAVLILHPLSTILEGGQTRAAKYD 630
Query: 569 TYQRVCSSGLWESALADALDKTLAS 593
TY+ +CSS +S AD + A+
Sbjct: 631 TYRDICSSSESKSLFADQAEAVCAT 655
>gi|255563538|ref|XP_002522771.1| conserved hypothetical protein [Ricinus communis]
gi|223538009|gb|EEF39622.1| conserved hypothetical protein [Ricinus communis]
Length = 699
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 173/619 (27%), Positives = 294/619 (47%), Gaps = 91/619 (14%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K + K+NFN SL+++K H+ ++DFIA+ L+ TG ++PW +D + YLK K
Sbjct: 30 FPLKHVVKSNFNSSLADLKRHVIAADFIAIDLEMTGITTAPWRESFEYDRFDVRYLKVKD 89
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + IA+PYNF +F D F CQ + L +AK
Sbjct: 90 SAEKFAVVQFGVCPFRWDSDHHSFIAHPYNFFIFRED--------CEFLCQATSLEFLAK 141
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFNTCI +G+SYLS QE R+ + P S+ D +F ER+++R
Sbjct: 142 YQFDFNTCILEGMSYLSRRQEEEALRRLNLRYEDSNLNDVGDVPLASITDILFSERMKNR 201
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQLV-LKM 258
+ W+ + L+ + I G QF + RP++ + + Q++L+ L
Sbjct: 202 LSEWR----------DGLLKNGNGI--GDSQFQTIFYKMRPALCLSGFTSHQLKLIQLVT 249
Query: 259 LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-----GF 313
+ F + + + + Q + V S+ DKDLL +E++ E+ + ++ GF
Sbjct: 250 RKHFEN--LAYVGCGQSSSLQEL-VVYIDSENDKDLLMKEVKD-EYRKGAEMKIKNAIGF 305
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
R VIDL+S++QK +V HN D IHSKFL PLPP EF+ ++ FP +ID LL
Sbjct: 306 RHVIDLLSSAQKLIVGHNCFLDIAHIHSKFLGPLPPTAEEFVSAVNKYFPHIIDTKILLN 365
Query: 374 DIGPV-----KKMTNISATIAYL--------------KNRFFAPIEMEIPN--QANENEG 412
+ K T++SA + L +R +E+++ + +N + G
Sbjct: 366 ANNVLLQRMKKSGTSLSAAFSLLCPQLATSSNKGINWASRPCVNVEVQVDDTRSSNWSSG 425
Query: 413 KIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY---------S 460
H G++ +F + C+ L + SS++ + + + N+ Y
Sbjct: 426 VKHEAGYDAFMTGCVFAQACNHLGVDFKLKSSSENLAHNEKLQKLINLLYISWINWDIID 485
Query: 461 LPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-- 518
L ++ + + + +++V +W F R+ AG ++ E +AF
Sbjct: 486 LRTGNRVAESLGFNYLRKQRPNILFKNIVLIWRFPSRLKAGEIR-------ECICKAFGL 538
Query: 519 ----NVRMVDRSCAIVVFGKPGLSNTFKNVMNSK-------AVSGPLREMVSDG-LKAAG 566
++ VD + V F K L + F + S +V PL +++ G AA
Sbjct: 539 NSVTSIYHVDETAVFVQFSKAELVSEFLVLKESLDRSNDPISVLHPLSKLLDGGNTCAAD 598
Query: 567 YETYQRVCSSGLWESALAD 585
YETY+ +CSS + + AD
Sbjct: 599 YETYKEICSSPISKVRFAD 617
>gi|297847952|ref|XP_002891857.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
gi|297337699|gb|EFH68116.1| Poly(A)-specific ribonuclease [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 174/647 (26%), Positives = 309/647 (47%), Gaps = 88/647 (13%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + +++P+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSHPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS---VADTVFIERV 201
FDFNTCI++GISYLS QE R+ + S + L +ADT+F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRRQEEEASKRLEMLHGEEGIVSSGETEDLKLVRLADTLFAVRM 215
Query: 202 RSRVKHWK-------NACTD----SDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
+ W+ NA ++ S+ T+++ T + RP++++ +
Sbjct: 216 EKMLNEWRSGLLHGGNASSEFPRISNGSTQSMETVFHHM---------RPALSLKGFTSH 266
Query: 251 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRV 310
Q++++ +L LV + K +Q V T S+ DK+ L +E + ++ KR+
Sbjct: 267 QLRVLNSVLGKHFGDLVYIHSNDKDSCSQGF-VVYTDSESDKENLMKEAK----DERKRL 321
Query: 311 R--------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 362
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ F
Sbjct: 322 AERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHF 381
Query: 363 PQVIDVNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEM 401
P ++D LL ++ P+ ++M S ++ ++L+ R +E+
Sbjct: 382 PYIVDTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEI 440
Query: 402 EIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIF 458
+ +N N G H G++ +F + C+ L D+F + + +Y N
Sbjct: 441 DNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDNFAQNEKLEKYINRL 500
Query: 459 YSLPGSSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFA 515
Y L + + N D +VS E++V +W F ++ A +K E
Sbjct: 501 Y-LSWTRGDIINLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKAREIK-------ECIC 552
Query: 516 EAF------NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG- 561
+AF +V VD S V+F L F K + S +V PL +++ G
Sbjct: 553 KAFGSASVTSVYHVDDSAVFVLFKNSELVWDFLTLKRQLESSDGPVSVLHPLSKILEGGN 612
Query: 562 LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSE 608
AA YE Y+ +CSS + + +D + + ET++ E
Sbjct: 613 TGAADYEAYKEICSSNISKILFSDQAETVGVKSRTRPDPQGETQRRE 659
>gi|302810647|ref|XP_002987014.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
gi|300145179|gb|EFJ11857.1| hypothetical protein SELMODRAFT_446815 [Selaginella moellendorffii]
Length = 603
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 174/618 (28%), Positives = 282/618 (45%), Gaps = 98/618 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T++N+ E+L E + HI + F+AV L+ +G ++PW + D T YL + +AE+F
Sbjct: 4 VTRSNWEEALVEARAHIRQAAFVAVDLELSGVQTTPWRGATEVDNLHTRYLNLRDSAEKF 63
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +CP A+ K IAYPYNF LFPR EL++ MP+ F CQ + L +AK FDF
Sbjct: 64 AMIQFGLCPVVWDAASVKFIAYPYNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDF 123
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIERVRS 203
N CIYDGISYLS QE + ++ A D A + S P AD +F E VR
Sbjct: 124 NACIYDGISYLSHEQEKLARHKLKLTDA-DGAPRELESFSVLEIPLNRTADVIFSESVRV 182
Query: 204 RVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPS----MTIDVCSERQVQLVLKML 259
+ W++ VL E+ P + ++V + LV ++L
Sbjct: 183 QAGEWRDK------------------VLQREKDAQEPEERLCLVVEVAGNHEANLVHQVL 224
Query: 260 -EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR------- 311
+ F D ++P G + V+ + + S +++ LL ++E+++R R
Sbjct: 225 RKSFQD-----LVPFTEDGAKKVKILFSRSVKERALL-----VGQWEKDRRSRLENQIMD 274
Query: 312 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
GFR++ID + S+KP+V HN D I+SKF A LP + +EF S+ FP + D
Sbjct: 275 AVGFRQLIDTLVESKKPVVGHNCFLDIAHIYSKFFATLPLSCSEFCSSIHQHFPCIFDTK 334
Query: 370 YLLKDIGPVKKMTNISAT--------IAYLKNRFFAPIEMEIPNQANENEGKIH---GHN 418
YLLK ++M T + L N+ PIE N + ++ G++
Sbjct: 335 YLLKADSAAQEMLGKGGTTLGPVFSNVGKLPNK--VPIEFGSSNLCRYDGTEMKHEAGYD 392
Query: 419 VVKICQLFGKLCSILKITP--------DAIESSDDFLASAINRYANIFY-SLPG------ 463
+F +C +K+ P A E ++ S + +AN Y G
Sbjct: 393 AYMTAAVFANICQFVKMDPANLPSLCEQAKEGEEE--RSGLGSHANHLYLGWRGHFVLDL 450
Query: 464 -SSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA----- 517
+ QE T + + + V +WG S+ + L+ + A
Sbjct: 451 STGQEATGPRSLKSSRSIEREKAKSVALMWGSGSTRSSEVDSRSLEADVKACFTAKSPPH 510
Query: 518 FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSG--------PLREMVSDGLKAAGYET 569
V +D S A VVF + + ++++ + SG + +V+ G K A YE
Sbjct: 511 VEVVRIDESSAFVVFRR---KESLESLVQAFECSGHHDKVGVCDVSGLVARGWKIARYEF 567
Query: 570 YQRVCSSGLWESALADAL 587
++++C S L + L DA+
Sbjct: 568 FEKLCESPLSTAKLTDAV 585
>gi|293331279|ref|NP_001169499.1| uncharacterized protein LOC100383372 [Zea mays]
gi|224029697|gb|ACN33924.1| unknown [Zea mays]
gi|413918598|gb|AFW58530.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 693
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 168/626 (26%), Positives = 300/626 (47%), Gaps = 76/626 (12%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 37 VKQVTRGNMEEALEKLRGRVREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 96
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 97 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQ 156
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSS------PALSVADTVFIER 200
FDFNTC +GISYLS AQE + T S++S P S +D +F ER
Sbjct: 157 FDFNTCFREGISYLSRAQEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSASDILFTER 216
Query: 201 VRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQLV 255
++ K W++A + L +++ G QF + RP++ ++ S Q++L+
Sbjct: 217 MKMNFKEWRDAIASKPMVDNHLSGNIK---CGSGQFQTVFFKMRPAIILNGFSSHQLKLI 273
Query: 256 LKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR--- 311
++L ++F D++ + T + V + +DED+ LL +++Q + +N+ R
Sbjct: 274 QQVLRKNFRDLI--FVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQE-DLLKNREERIKS 330
Query: 312 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
G R VIDL+S+ +K +V H+ D ++SKF+ PLP ++ EF S FP + D
Sbjct: 331 AIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIADTR 390
Query: 370 YLLKDIGPVKKMT---NISATIAYL-----------KNRFFAPIEMEIPNQANEN----E 411
+L+ V+K+ + S + A+L K +P+ +E+ +
Sbjct: 391 HLMSVNQAVQKLMKHKSKSLSSAFLLLCPASYSSVEKPSSHSPVTIEVEGDETMSSRFIS 450
Query: 412 GKIH--GHNVVKICQLFGKLCSILKI------------TPDAIESSDDFLASAINRYANI 457
G H G++ +F +LC+ L I T ++ +FL+ + N +
Sbjct: 451 GAKHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNSGTVL 510
Query: 458 FYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 517
S + +P G+T +++V +WGF ++ +K+ + +VF
Sbjct: 511 DLSTGMETPDP------GYTRRYPAAVYDNIVVIWGFLSKVRPKEIKDCI---CKVFGSG 561
Query: 518 --FNVRMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAAGY 567
V +D + A+V F K N F ++ ++ ++ PL ++ G +AA Y
Sbjct: 562 SVTTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAAKY 621
Query: 568 ETYQRVCSSGLWESALADALDKTLAS 593
+TY+ +CSS + AD + A+
Sbjct: 622 DTYRDICSSSESKYLFADQAEAVCAT 647
>gi|302807724|ref|XP_002985556.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
gi|300146762|gb|EFJ13430.1| hypothetical protein SELMODRAFT_424560 [Selaginella moellendorffii]
Length = 603
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 172/619 (27%), Positives = 283/619 (45%), Gaps = 100/619 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T++N+ E+L E + HI + F+AV L+ TG ++PW + D T YL + +AE+F
Sbjct: 4 VTRSNWEEALVEARAHIRQAAFVAVDLELTGVQTTPWRGATEVDNLHTRYLNLRDSAEKF 63
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +CP A+ K IAYPYNF LFPR EL++ MP+ F CQ + L +AK FDF
Sbjct: 64 AMIQFGLCPVLWDAAGGKFIAYPYNFCLFPRHELQIEMPARDFLCQATSLEFLAKHQFDF 123
Query: 150 NTCIYDGISYLSEAQESTV--KVRMGNPMAVDHATKSSSS---PALSVADTVFIERVRSR 204
N CIYDGISYLS QE K+++ + +S S+ P AD +F E VR +
Sbjct: 124 NACIYDGISYLSHEQEKLARHKLKLTDADGAPRELESFSALEIPLNRTADVIFSESVRVQ 183
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPS----MTIDVCSERQVQLVLKML- 259
W++ VL E+ P + ++V + LV ++L
Sbjct: 184 AGEWRDK------------------VLQREKDAHEPEERLCLVVEVAGNHEANLVHQVLR 225
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------- 311
+ F D ++P G + V+ + S +++ LL ++E+++R R
Sbjct: 226 KSFQD-----LVPFTEDGAKKVKILFPRSVKERALL-----VGQWEKDRRSRLENQIMDA 275
Query: 312 -GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
GFR++ID + S+KP+V HN D I++KF A LP + +EF S+ FP + D Y
Sbjct: 276 IGFRQLIDALVESKKPVVGHNCFLDIAHIYNKFFATLPLSCSEFCSSIHQHFPCIFDTKY 335
Query: 371 LLKDIGPVKKMTNISAT--------IAYLKNRFFAPIEMEIPNQA----NENEGKIH-GH 417
LLK ++M T + L N+ +++E + + + E K G+
Sbjct: 336 LLKADSAAQEMLGKGGTTLGPVFSNVGKLPNK----VQIEFGSSSLCRYDGTEMKHEAGY 391
Query: 418 NVVKICQLFGKLCSILKITP--------DAIESSDDFLASAINRYANIFY-SLPG----- 463
+ +F +C +K+ P A E ++ S + +AN Y G
Sbjct: 392 DAYMTAAVFANICQFMKMDPANLPSLCEQAKEGEEE--RSGLGSHANHLYLGWRGHFVLD 449
Query: 464 --SSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA---- 517
+ QE T + + + V +WG S + L+ + A
Sbjct: 450 LSTGQEATGPRSLKSSRSIEREKAKSVALMWGSGSTRSLEVDSRSLEADVKACFTAKSPP 509
Query: 518 -FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSG--------PLREMVSDGLKAAGYE 568
V +D S A VVF + + ++++ + SG + +V+ G K A YE
Sbjct: 510 HVEVVRIDESSAFVVFRR---KESLESLVQAFECSGHHDKVGVCDVSGLVARGWKIARYE 566
Query: 569 TYQRVCSSGLWESALADAL 587
++++C S L + L DA+
Sbjct: 567 FFEKLCESPLSTAKLTDAV 585
>gi|357167784|ref|XP_003581331.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Brachypodium
distachyon]
Length = 729
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 165/622 (26%), Positives = 301/622 (48%), Gaps = 62/622 (9%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 47 VKQVTRGNLAEALEELRARVRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 106
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+RF LQ +CPF+ +K +A+P+NF +FPR EL + S+ F CQT+ + +AK
Sbjct: 107 QRFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPDDISSHEFLCQTTSIDFLAKYQ 166
Query: 147 FDFNTCIYDGISYLSEAQE----STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
FDFNTC ++GISYLS AQE + V + +A + ++ P S AD +F ER++
Sbjct: 167 FDFNTCFHEGISYLSRAQEEEALQKLNVLYHDGIASPNTSEEEDVPLRSTADLLFTERMK 226
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ---FGSRPSMTIDVCSERQVQLVLKML 259
+ K W++ S+ + + K Q F P++ ++ + Q++L+ ++L
Sbjct: 227 IKFKEWRDVII-SNPRMDNHWLECNKFSTHQFQTVFFKMHPAILLNGFTSHQLKLIQQVL 285
Query: 260 -EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-----GF 313
+DF D++ I T R V T D L ++LQ + +++ R G
Sbjct: 286 RKDFKDLM--YISTFGEDNTSEKRVVYTDDSNDSVSLMKDLQE-DLLRSREARVKSAVGI 342
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
R VIDL+++ +K +V H+ D ++SKF+ PLP + EF + P + D +L+
Sbjct: 343 RHVIDLLASERKLIVGHSCFLDIAQVYSKFIGPLPSTVKEFALGIHKILPYIADTRHLMS 402
Query: 374 DIGPV-----KKMTNISATIAYLKNRF---------FAPIEMEIPNQANEN------EGK 413
V +K ++S+ + L F +P+ +E+ +A+E G
Sbjct: 403 ASDSVQYLMRQKSKSLSSVFSLLCPAFHSTVAEPSTLSPVRIEV--EADETMLSCFASGA 460
Query: 414 IH--GHNVVKICQLFGKLCSILKITPDAIESSDDF-LASAINRYANIFYSL--PGSSQEP 468
H G++ +F +LC L + + + D+ + + + +Y N+ G+S +
Sbjct: 461 KHEAGYDAFMTGCVFAQLCDHLDVKFEHLPPRDNLAMNNKLQKYINLLSPSFNSGTSLDL 520
Query: 469 TNEEIRGWTNDKRK---VSCEDVVFLWGFRERISAGILKNMLQGSHEVF--AEAFNVRMV 523
+ R T KR+ V ++VV +WG++ + +K+ + +VF A + +
Sbjct: 521 STGMERPDTGYKRRYPTVLYDNVVLIWGYQSELRPRDIKDCIC---KVFGPASVTTIFSI 577
Query: 524 DRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAAGYETYQRVCS 575
D + +V F K N F ++ ++ +V PL ++ G +AA Y+TY+ +C
Sbjct: 578 DSTAVLVQFSKQESVNDFMDLKAALEKTDSAISVLHPLSTILEGGKTRAANYDTYRDICG 637
Query: 576 SGLWESALADALDKTLASHNCL 597
S + + AD + +S L
Sbjct: 638 SSVSKYFFADQAEAVCSSSKSL 659
>gi|293333314|ref|NP_001169910.1| uncharacterized protein LOC100383807 [Zea mays]
gi|224032309|gb|ACN35230.1| unknown [Zea mays]
Length = 280
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/280 (39%), Positives = 177/280 (63%), Gaps = 11/280 (3%)
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 398
+H+KF+APLPPNM+EF+CSL++ FP V+D+++L + IGP++K NI A ++YL+ ++F P
Sbjct: 2 LHTKFIAPLPPNMHEFMCSLKMVFPNVVDISHLWRQIGPLRKAKNIQAALSYLQRQYFVP 61
Query: 399 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIF 458
IE+EIP Q + + NV++I +LF KL ++LKI+P+ S + +A+ Y NIF
Sbjct: 62 IEIEIPQQDGTSSITKNEQNVLRITKLFAKLSNLLKISPECQLQSRE-QCTAVEEYCNIF 120
Query: 459 YSLPGSSQEPTNEEIRGWTNDKRK-VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 517
Y P +++ + +D + VS ++++FLWGFRE+ S LK+ L G H+ F+E
Sbjct: 121 Y--PSCVVGGSDDANFAFESDTTETVSTDNIIFLWGFREK-SVKELKSYLIGLHQAFSED 177
Query: 518 FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGP-LREMVSDGLKAAGYETYQRVCSS 576
F V+++D++C+ ++F SNT ++ GP L S+GLKAAG+E Y++VC
Sbjct: 178 FEVKLLDKTCSALIFRD---SNTAMQLLKEIGSEGPSLNRFFSEGLKAAGFEVYKKVCRL 234
Query: 577 GLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELI 616
GLW+S LA+ L+ S E S+IY ++EL+
Sbjct: 235 GLWDSDLAEVLED--VSSELGVPTLPECSTSQIYWNSELM 272
>gi|413918597|gb|AFW58529.1| hypothetical protein ZEAMMB73_225129 [Zea mays]
Length = 686
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 162/624 (25%), Positives = 297/624 (47%), Gaps = 79/624 (12%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L +++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 37 VKQVTRGNMEEALEKLRGRVREAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSA 96
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +FPR EL S+ F CQT+ + +AK
Sbjct: 97 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPSDCSSHEFLCQTTSIEFLAKYQ 156
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSSSS---PALSVADTVFIERVR 202
FDFNTC + ++ +E+ K M + V +T S P S +D +F ER++
Sbjct: 157 FDFNTCFRE-----AQEEEALQKFNMLHHGRTVTSSTNSEEDGDMPLKSASDILFTERMK 211
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGS-----RPSMTIDVCSERQVQLVLK 257
K W++A + L +++ G QF + RP++ ++ S Q++L+ +
Sbjct: 212 MNFKEWRDAIASKPMVDNHLSGNIK---CGSGQFQTVFFKMRPAIILNGFSSHQLKLIQQ 268
Query: 258 ML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR----- 311
+L ++F D++ + T + V + +DED+ LL +++Q + +N+ R
Sbjct: 269 VLRKNFRDLI--FVCTFGEDDTSEKKVVYSDTDEDRILLMKDVQE-DLLKNREERIKSAI 325
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
G R VIDL+S+ +K +V H+ D ++SKF+ PLP ++ EF S FP + D +L
Sbjct: 326 GIRHVIDLLSSERKLIVGHSCFLDIAQVYSKFVRPLPSSIKEFALSFHKFFPHIADTRHL 385
Query: 372 LKDIGPVKKMT---NISATIAYL-----------KNRFFAPIEMEIPNQANEN----EGK 413
+ V+K+ + S + A+L K +P+ +E+ + G
Sbjct: 386 MSVNQAVQKLMKHKSKSLSSAFLLLCPASYSSVEKPSSHSPVTIEVEGDETMSSRFISGA 445
Query: 414 IH--GHNVVKICQLFGKLCSILKI------------TPDAIESSDDFLASAINRYANIFY 459
H G++ +F +LC+ L I T ++ +FL+ + N +
Sbjct: 446 KHEAGYDAYMTGCIFAQLCAYLGIQFEQFSPLDNLATNTKLQKHINFLSPSWNSGTVLDL 505
Query: 460 SLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA-- 517
S + +P G+T +++V +WGF ++ +K+ + +VF
Sbjct: 506 STGMETPDP------GYTRRYPAAVYDNIVVIWGFLSKVRPKEIKDCI---CKVFGSGSV 556
Query: 518 FNVRMVDRSCAIVVFGKPGLSNTFKNVM-------NSKAVSGPLREMVSDG-LKAAGYET 569
V +D + A+V F K N F ++ ++ ++ PL ++ G +AA Y+T
Sbjct: 557 TTVFSIDSTAALVQFKKQESVNDFLDLKAVLERADSAISILHPLSTILEGGQTRAAKYDT 616
Query: 570 YQRVCSSGLWESALADALDKTLAS 593
Y+ +CSS + AD + A+
Sbjct: 617 YRDICSSSESKYLFADQAEAVCAT 640
>gi|357504879|ref|XP_003622728.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
gi|355497743|gb|AES78946.1| Poly(A)-specific ribonuclease PARN-like protein [Medicago
truncatula]
Length = 206
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 91/146 (62%), Positives = 115/146 (78%), Gaps = 5/146 (3%)
Query: 13 RSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSS-PWHRV 71
RS CTK W +KQ+T +NFN+SL EIK +IS+SDFIA+S++ TGS S+ PWHRV
Sbjct: 16 RSLCTKISSSK---WKVKQVTISNFNDSLEEIKTNISNSDFIAISMEKTGSSSTTPWHRV 72
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQASK-VIAYPYNFHLFPRDELKMGMPSY 130
FDT ETAYLKA +A+RFQ+LQFA+CPF + S ++A+PYNF LFPRDELK+GMP+Y
Sbjct: 73 QPFDTAETAYLKASQSAQRFQLLQFAVCPFSVTDSNNLVAHPYNFLLFPRDELKLGMPAY 132
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDG 156
SF CQTS+L MA++GFDFN CIY+G
Sbjct: 133 SFLCQTSHLATMARQGFDFNACIYEG 158
>gi|8778305|gb|AAF79314.1|AC002304_7 F14J16.11 [Arabidopsis thaliana]
Length = 660
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/474 (25%), Positives = 231/474 (48%), Gaps = 65/474 (13%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 95 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 154
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 155 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 214
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERVRS 203
Y E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 215 --------------YQREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARMEK 260
Query: 204 RVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQVQLVLK 257
+ W++ + + +I G Q RP++++ + Q++++
Sbjct: 261 LLNEWRSGLLHGGNAS----SEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVLNS 316
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR------ 311
+L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 317 VLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKIQS 371
Query: 312 --GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D
Sbjct: 372 AIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTK 431
Query: 370 YLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQAN 408
LL ++ P+ ++M S ++ ++L+ R +E++ +N
Sbjct: 432 ILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSN 490
Query: 409 ENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFY 459
N G H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 491 WNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY 544
>gi|116309728|emb|CAH66773.1| OSIGBa0115M15.11 [Oryza sativa Indica Group]
Length = 703
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 161/630 (25%), Positives = 289/630 (45%), Gaps = 97/630 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLELDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER +NF +F R+E ++ F CQT+ + +AK FD
Sbjct: 106 ER----------------------HNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFD 143
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPALSVADTVFIERVR 202
FNTC +GI YLS QE ++ N + + + + +P S AD +F ER++
Sbjct: 144 FNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMK 203
Query: 203 SRVKHWKNACTDS----DIKTE--ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
+ W+N+ + D ++E + + F RP++ ++ + Q++L+
Sbjct: 204 IKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF-----FKMRPAIMLNGFTSHQLKLIR 258
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQ 306
++L LV + + G ++ R V T ++EDK DLLK RE +
Sbjct: 259 QILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV----- 312
Query: 307 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP +
Sbjct: 313 -KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMA 371
Query: 367 DVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------MEIPNQANE----- 409
D +L+ V+ K ++S+ + L AP E + I +A+E
Sbjct: 372 DTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVRIEVEADETVLSC 431
Query: 410 -NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLP---- 462
G H G++ +F +LC+ I + + +D LA+ IN +I P
Sbjct: 432 FTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLKKHINLLPPCWNS 490
Query: 463 GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNMLQGSHEVFAEA-- 517
G+ + + R KR+ ++V+ +WGF+ ++ +K+ + +VF A
Sbjct: 491 GTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI---CKVFGRASV 547
Query: 518 FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMVSDG-LKAAGYET 569
+V +D + +V F K L T ++ ++ +V PL ++ G +AA Y+T
Sbjct: 548 TSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDT 607
Query: 570 YQRVCSSGLWESALADALDKTLASHNCLSE 599
Y+ +C S + + + AD + ++ N S+
Sbjct: 608 YRDICRSSVSKFSFADQAEAVCSTSNSESK 637
>gi|116310355|emb|CAH67368.1| OSIGBa0128P10.2 [Oryza sativa Indica Group]
Length = 702
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 159/630 (25%), Positives = 287/630 (45%), Gaps = 98/630 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLELDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+NF +F R+E ++ F CQT+ + +AK FD
Sbjct: 106 R-----------------------HNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQFD 142
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPALSVADTVFIERVR 202
FNTC +GI YLS QE ++ N + + + + +P S AD +F ER++
Sbjct: 143 FNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPLKSAADVLFTERMK 202
Query: 203 SRVKHWKNACTDS----DIKTE--ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
+ W+N+ + D ++E + + F RP++ ++ + Q++L+
Sbjct: 203 IKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF-----FKMRPAIMLNGFTSHQLKLIR 257
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQ 306
++L LV + + G ++ R V T ++EDK DLLK RE +
Sbjct: 258 QILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV----- 311
Query: 307 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP +
Sbjct: 312 -KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMA 370
Query: 367 DVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------MEIPNQANE----- 409
D +L+ V+ K ++S+ + L AP E + I +A+E
Sbjct: 371 DTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSVRIEVEADETVLSC 430
Query: 410 -NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLP---- 462
G H G++ +F +LC+ I + + +D LA+ IN +I P
Sbjct: 431 FTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINLKKHINLLPPCWNS 489
Query: 463 GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNMLQGSHEVFAEA-- 517
G+ + + R KR+ ++V+ +WGF+ ++ +K+ + +VF A
Sbjct: 490 GTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDCI---CKVFGRASV 546
Query: 518 FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREMVSDG-LKAAGYET 569
+V +D + +V F K L T ++ ++ +V PL ++ G +AA Y+T
Sbjct: 547 TSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTILEGGKTRAAKYDT 606
Query: 570 YQRVCSSGLWESALADALDKTLASHNCLSE 599
Y+ +C S + + + AD + ++ N S+
Sbjct: 607 YRDICRSSVSKFSFADQAEAVCSTSNSESK 636
>gi|57834081|emb|CAE05998.4| OSJNBa0016O02.8 [Oryza sativa Japonica Group]
Length = 622
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/604 (23%), Positives = 258/604 (42%), Gaps = 126/604 (20%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ERF LQ +CPF+ +K F P E + Y+ +
Sbjct: 106 ERFAALQLGVCPFRWDPAKSA-----FVAHPTQEEEALQKLYTL--------------HN 146
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
T Y S E +E +P S AD +F ER++ + W
Sbjct: 147 NETSAYPNTS---EEEED--------------------APLKSAADVLFTERMKIKFNEW 183
Query: 209 KNACTDS----DIKTE--ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+N+ + D ++E + + F RP++ ++ + Q++L+ ++L
Sbjct: 184 RNSIVSNQRVDDHRSENFKFADQFQTVF-----FKMRPAIMLNGFTSHQLKLIRQILRTH 238
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DLLK-RELQTFEFEQNKRVRG 312
LV + + G ++ R V T ++EDK DLLK RE + K G
Sbjct: 239 FRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDLLKSREAKV------KSAVG 291
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
R VIDL+++ +K +V H+ D I+SKF+ PLP +M EF S+ FP + D +L+
Sbjct: 292 IRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEEFALSINRMFPHMADTRHLM 351
Query: 373 KDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 432
+++ + Y R+ A +++ Q LC+
Sbjct: 352 ----------SVNDAVQY---RYLASLQVLSMKQ----------------------LCAY 376
Query: 433 LKITPDAIESSDDFLASAINRYANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC--- 485
I + + +D LA+ IN +I P G+ + + R KR+
Sbjct: 377 HGIKFEQLSPLED-LATNINLKKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVY 435
Query: 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------G 536
++V+ +WGF+ ++ +K+ + +VF A +V +D + +V F K
Sbjct: 436 DNVILIWGFQSKVRPKDIKDCI---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLD 492
Query: 537 LSNTFKNVMNSKAVSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHN 595
L T ++ ++ +V PL ++ G +AA Y+TY+ +C S + + + AD + ++ N
Sbjct: 493 LKATLESADSAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSN 552
Query: 596 CLSE 599
S+
Sbjct: 553 SESK 556
>gi|78484000|dbj|BAE47489.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 540
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 243/540 (45%), Gaps = 82/540 (15%)
Query: 142 MAKEGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFI 198
+AK FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F
Sbjct: 4 LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFA 63
Query: 199 ERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQV 252
R+ + W++ + + +I G Q RP++++ + Q+
Sbjct: 64 ARMEKLLNEWRSGL----LHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQL 119
Query: 253 QLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR- 311
+++ +L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 120 RVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAE 174
Query: 312 -------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP
Sbjct: 175 RKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPY 234
Query: 365 VIDVNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEI 403
++D LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 235 IVDTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDN 293
Query: 404 PNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYS 460
+N N G H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 294 VRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY- 352
Query: 461 LPGSSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 517
L + + + D +VS E++V +W F ++ A +G E +A
Sbjct: 353 LSWTRXDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKA 405
Query: 518 F------NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LK 563
F +V VD S V+F L F K + S +V PL +++ G
Sbjct: 406 FGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTG 465
Query: 564 AAGYETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 617
AA YE Y+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 466 AADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 525
>gi|240254282|ref|NP_001077725.4| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
gi|78484002|dbj|BAE47490.1| polyA specific ribonuclease [Arabidopsis thaliana]
gi|332195191|gb|AEE33312.1| Poly(A)-specific ribonuclease PARN [Arabidopsis thaliana]
Length = 540
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 132/540 (24%), Positives = 243/540 (45%), Gaps = 82/540 (15%)
Query: 142 MAKEGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFI 198
+AK FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F
Sbjct: 4 LAKYQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFA 63
Query: 199 ERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQV 252
R+ + W++ + + +I G Q RP++++ + Q+
Sbjct: 64 ARMEKLLNEWRSGL----LHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQL 119
Query: 253 QLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR- 311
+++ +L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 120 RVLNSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAE 174
Query: 312 -------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP
Sbjct: 175 RKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPY 234
Query: 365 VIDVNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEI 403
++D LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 235 IVDTKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDN 293
Query: 404 PNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYS 460
+N N G H G++ +F + C+ L DDF + + +Y N Y
Sbjct: 294 VRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY- 352
Query: 461 LPGSSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA 517
L + + + D +VS E++V +W F ++ A +G E +A
Sbjct: 353 LSWTRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKA 405
Query: 518 F------NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LK 563
F +V VD S V+F L F K + S +V PL +++ G
Sbjct: 406 FGSASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTG 465
Query: 564 AAGYETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 617
AA YE Y+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 466 AADYEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 525
>gi|198418498|ref|XP_002129059.1| PREDICTED: similar to poly(A)-specific ribonuclease [Ciona
intestinalis]
Length = 642
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 183/409 (44%), Gaps = 47/409 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT+ NF E+L + I S FI + + TG ++ + ++++D+PE YLK E F
Sbjct: 3 ITRANFTETLPIVSKAIDESSFICIDGEFTG-LTNHRYNLTSYDSPEERYLKLHSNTENF 61
Query: 92 QILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+LQF +C F K K +NF++FP G+P F+CQ S L + + FDF
Sbjct: 62 MLLQFGMCTFSWKEDEQKYQVDAFNFYIFPFRSSFPGVPDRIFSCQASSLDFLTLQDFDF 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-------------KSSSSPALSVADTV 196
N I +GI +L ++E++V+ + A +T SS P+ + D
Sbjct: 122 NKAIKEGIPFLRPSEEASVRSAIEEKQAYRQSTYKSPAKFDGVGRSPSSKGPSTPITDQK 181
Query: 197 ---FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQ 253
F E+V +++K++ DS+I E + LRKI+ E + I V S Q
Sbjct: 182 TKDFTEKVVAKIKNFLENTEDSEIVLEPCNSYLRKILF--ENIPAAFPGKILVESRTDEQ 239
Query: 254 LVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGF 313
+ + +++ Q R + E+ +L + GF
Sbjct: 240 THQRHI---------VVVRGASASLQKERNLQAKVKEESNL-------------EEAVGF 277
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
+++ +S SQK +V HN L D + +F+ PLP + EF + FP+++D L+
Sbjct: 278 SKIVKKLSQSQKLIVGHNMLLDVFYTIQQFVCPLPDVLEEFKSLVGCVFPKLLDTK-LMG 336
Query: 374 DIGPVKKMTNISA---TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNV 419
+ P + + + +A A L+ F P ++ +P + N K N+
Sbjct: 337 SMLPFRDLLSTTALGDMNARLREPPFQPPDITVPGKYNVGSTKSQDSNL 385
>gi|328767409|gb|EGF77459.1| hypothetical protein BATDEDRAFT_36029 [Batrachochytrium
dendrobatidis JAM81]
Length = 581
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/344 (27%), Positives = 160/344 (46%), Gaps = 41/344 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ ++NF E L ++ I ++DFIAV + TG +P R+S DTP+ YLK + AA
Sbjct: 2 EVVQSNFEEVLDSVREAIENADFIAVDTEFTGLGLTPNERLSLLDTPQERYLKHRSAARL 61
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F+ +Q + FK A + ++ P+NF+++PR K +F Q S L + GFD
Sbjct: 62 FEPIQIGLAAFKWDAEQGVYMSKPFNFNIYPRTGNKFFGLDRTFCVQISSLEFLEGNGFD 121
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GI ++S +E+ ++ ++ + S + +T +++ V+ W
Sbjct: 122 FNKWIREGIPFVSITEEAAIRKKL-------ETINTESDIVIDEKNTEYVKDFIESVQKW 174
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
TD + S K ++ E P ++ V LK L
Sbjct: 175 LCETTDESYSI-STSNSFHKRLIHQEIKKQFPGQVSTESTKSGVN--LKRL--------- 222
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
QA + + ++ + LLK EL + GFR+VID++ A+QKP+V
Sbjct: 223 ----------QANQKDSSHTESRQALLKAELDL--------LVGFRKVIDIMVAAQKPIV 264
Query: 329 AHN-SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
HN SL+ F IH +F+ PLP E+ + FP V D ++
Sbjct: 265 GHNMSLDLFHIIH-RFIQPLPDTWEEYKDIVNRNFPSVFDTKFM 307
>gi|218195015|gb|EEC77442.1| hypothetical protein OsI_16244 [Oryza sativa Indica Group]
Length = 931
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 133/523 (25%), Positives = 240/523 (45%), Gaps = 75/523 (14%)
Query: 136 TSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPA 189
T+ + +AK FDFNTC +GI YLS QE ++ N + + + + +P
Sbjct: 359 TTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPL 418
Query: 190 LSVADTVFIERVRSRVKHWKNACTDS----DIKTE--ALVTSLRKIVLGGEQFGSRPSMT 243
S AD +F ER++ + W+N+ + D ++E + + F RP++
Sbjct: 419 KSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF-----FKMRPAIM 473
Query: 244 IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DL 294
++ + Q++L+ ++L LV + + G ++ R V T ++EDK DL
Sbjct: 474 LNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDL 532
Query: 295 LK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNE 353
LK RE + K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M E
Sbjct: 533 LKSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEE 586
Query: 354 FICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------M 401
F S+ FP + D +L+ V+ K ++S+ + L AP E +
Sbjct: 587 FALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSV 646
Query: 402 EIPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINR 453
I +A+E G H G++ +F +LC+ I + + +D LA+ IN
Sbjct: 647 RIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINL 705
Query: 454 YANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNM 506
+I P G+ + + R KR+ ++V+ +WGF+ ++ +K+
Sbjct: 706 KKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDC 765
Query: 507 LQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREM 557
+ +VF A +V +D + +V F K L T ++ ++ +V PL +
Sbjct: 766 I---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTI 822
Query: 558 VSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
+ G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 823 LEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 865
>gi|222629021|gb|EEE61153.1| hypothetical protein OsJ_15114 [Oryza sativa Japonica Group]
Length = 893
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/523 (25%), Positives = 240/523 (45%), Gaps = 75/523 (14%)
Query: 136 TSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRM----GNPMAV--DHATKSSSSPA 189
T+ + +AK FDFNTC +GI YLS QE ++ N + + + + +P
Sbjct: 321 TTSIDFLAKYQFDFNTCFREGIYYLSRTQEEEALQKLYTLHNNETSAYPNTSEEEEDAPL 380
Query: 190 LSVADTVFIERVRSRVKHWKNACTDS----DIKTE--ALVTSLRKIVLGGEQFGSRPSMT 243
S AD +F ER++ + W+N+ + D ++E + + F RP++
Sbjct: 381 KSAADVLFTERMKIKFNEWRNSIVSNQRVDDHRSENFKFADQFQTVF-----FKMRPAIM 435
Query: 244 IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK---------DL 294
++ + Q++L+ ++L LV + + G ++ R V T ++EDK DL
Sbjct: 436 LNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISLMKNVREDL 494
Query: 295 LK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNE 353
LK RE + K G R VIDL+++ +K +V H+ D I+SKF+ PLP +M E
Sbjct: 495 LKSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVGPLPSSMEE 548
Query: 354 FICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE-------M 401
F S+ FP + D +L+ V+ K ++S+ + L AP E +
Sbjct: 549 FALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDEKSSTLPSV 608
Query: 402 EIPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINR 453
I +A+E G H G++ +F +LC+ I + + +D LA+ IN
Sbjct: 609 RIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED-LATNINL 667
Query: 454 YANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERISAGILKNM 506
+I P G+ + + R KR+ ++V+ +WGF+ ++ +K+
Sbjct: 668 KKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKVRPKDIKDC 727
Query: 507 LQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKAVSGPLREM 557
+ +VF A +V +D + +V F K L T ++ ++ +V PL +
Sbjct: 728 I---CKVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAISVLHPLSTI 784
Query: 558 VSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
+ G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 785 LEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 827
>gi|47218930|emb|CAF98128.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 176/391 (45%), Gaps = 58/391 (14%)
Query: 35 TNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQ 92
T+F E L+ + + I +DF+A+ + +G P T DTPE Y K K + F
Sbjct: 1 TDFKECLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFL 60
Query: 93 ILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ QF +C FK SK I P+NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 61 LFQFGVCTFKYDQTKSKYIIKPFNFYIFPK-PFNRTSPDKKFICQSSSIDFLASQGFDFN 119
Query: 151 TCIYDGISYLSEAQESTVKVR-----------MGNPMAVDHATKSSSSPALSVADTV--F 197
+GI YL++ +E+ ++ + +G P + + SS PA V D F
Sbjct: 120 KVFCNGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYI--SPSSSKGPA-HVPDEHKDF 176
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I +V RV EAL S K S+ ++ C+ Q +L+ +
Sbjct: 177 INKVIERV--------------EALFGSSEK------------SLDLEPCTGFQRKLIYQ 210
Query: 258 MLE-DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFR 314
L F L I + + R + S ++++ KRE Q E EQ + GF
Sbjct: 211 TLNWKFPKGLHVETIETQ----KKERFIQVSKVDEEERKKREQQKLEREQEELNDAVGFS 266
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
VI IS S K +V HN L D +F PLP + EF FP+++D L+
Sbjct: 267 RVIHAISQSGKLVVGHNMLLDVMHTIHQFYCPLPEELQEFKEVTMCVFPRLLDTK-LMAS 325
Query: 375 IGPVKKM---TNISATIAYLKNRFFAPIEME 402
P K++ T+++ LK + F P ++E
Sbjct: 326 TQPFKELISNTSLAELEKQLKEKPFKPPQVE 356
>gi|410917870|ref|XP_003972409.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Takifugu rubripes]
Length = 559
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 178/384 (46%), Gaps = 37/384 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L+ + + I +DF+A+ + +G P T DTPE Y K K +
Sbjct: 2 ELTRRNFKECLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I P+NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDQTKSKYIIKPFNFYVFPKP-FNRTSPDKKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGN--PMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E+ ++ + A T S SP+ S V
Sbjct: 121 FDFNKVFCNGIPYLNQEEEAQLREQTEERRSQANGVGTPSYISPSSSKGPA----HVPEE 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
K + N + K EAL + G+ ++ ++ C+ Q +L+ + L +
Sbjct: 177 HKEFINKVIE---KVEALFS------------GTEKTLVLEPCTGFQRKLIYQTL----N 217
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P + + TQ R + S ++++ +R+ Q E EQ + GF VI+ IS
Sbjct: 218 WKFPKGLHVETIETQKKERFIQVSRVDEEERKRRKQQKLEREQEELNDAVGFSRVINAIS 277
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++ +F FP+++D L+ P K+M
Sbjct: 278 QSGKLVVGHNMLLDVMHTIYQFYCPLPEDLQDFKEVTMCVFPRLLDTK-LMASTQPFKEM 336
Query: 382 ---TNISATIAYLKNRFFAPIEME 402
T+++ LK F P ++E
Sbjct: 337 ISNTSLAELEKQLKESPFKPPQVE 360
>gi|148236825|ref|NP_001081143.1| poly(A)-specific ribonuclease PARN [Xenopus laevis]
gi|46329632|gb|AAH68919.1| Parn-A protein [Xenopus laevis]
Length = 631
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 53/383 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMNVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + ++ + S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNRF 395
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKRL 349
>gi|60390587|sp|Q90ZA1.1|PARN_XENLA RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease; AltName: Full=parn-A
gi|14495249|gb|AAK64218.1|AF309688_1 poly(A)-specific ribonuclease [Xenopus laevis]
Length = 631
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 53/383 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMNVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + ++ + S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNRF 395
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKRL 349
>gi|49115955|gb|AAH73682.1| Unknown (protein for IMAGE:5572400), partial [Xenopus laevis]
Length = 517
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 178/382 (46%), Gaps = 53/382 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMNVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + ++ + S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNR 394
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKR 348
>gi|325191502|emb|CCA26275.1| Poly(A)specific ribonuclease PARNlike protein putati [Albugo
laibachii Nc14]
Length = 713
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 160/376 (42%), Gaps = 70/376 (18%)
Query: 32 ITKTNFNESLSEIKNHI--SSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAK 85
+T+ NF S ++K I S FIA+ + TG S W+ DT E Y K K
Sbjct: 50 VTRHNFETSFQQVKKSILSDSCKFIAIDTEFTGLCFKEASKEWY----LDTLEERYQKLK 105
Query: 86 FAAERFQILQFAICPFKLQASKVIAYP--------------------YNFHLFPRDELKM 125
E F + QF + + S V +NF+LFPR
Sbjct: 106 QTGENFLVSQFGLATVHVTPSAVNVKQENETTSNRASDHKYEFEIKVWNFYLFPR---PY 162
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPM-AVDHATKS 184
G F+CQ S L +A+ FDFN IYDGIS+ ++ S ++ R+ + +
Sbjct: 163 GHLDRRFSCQASCLQFLAEHDFDFNKFIYDGISFCKLSKVSMMQKRLEKQVEQYRQQQED 222
Query: 185 SSSPA---LSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPS 241
P+ L V F + VR V D +K E L+
Sbjct: 223 GCKPSVLQLDVQGKKFQQHVREMV--------DDFLKEETLIEG---------------- 258
Query: 242 MTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA------VRAVLTSSDEDKDLL 295
+DV + +L L+ + +++ I A A ++ L +S+E K L+
Sbjct: 259 --VDVQQQESKELFLEAKTSYQRMIIYQTIRAIDTNLHAKSVDEGIQIRLVTSEEKKQLM 316
Query: 296 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
+ +L+ E N+ + GF VI ++ S KP+V HN+L DF +I+ +F PLP ++ EF
Sbjct: 317 EEKLEQMRSETNEAI-GFSRVIQVLKDSNKPIVGHNALLDFIYIYHQFCQPLPNDLKEFK 375
Query: 356 CSLRLAFPQVIDVNYL 371
L +FP++ D Y+
Sbjct: 376 KELTHSFPKIYDTKYM 391
>gi|197246532|gb|AAI69159.1| Unknown (protein for IMAGE:8898488) [Xenopus (Silurana) tropicalis]
Length = 525
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 177/382 (46%), Gaps = 53/382 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMDVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + + R ++ S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNR 394
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKR 348
>gi|115530723|emb|CAL49352.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 519
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 177/382 (46%), Gaps = 53/382 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMDVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + + R ++ S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNR 394
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKR 348
>gi|308235956|ref|NP_001184102.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Xenopus
(Silurana) tropicalis]
Length = 632
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 177/383 (46%), Gaps = 53/383 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
++T++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EMTRSNFKDNLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYFMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-------GNPMAVDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + A+ + + ++S +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEEKQLRDQYEERRSQSNGASAMSYVSPNASKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMDLEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKG-GGTQAVRAVLTS--SDEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + + R ++ S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETLESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNRF 395
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKRL 349
>gi|357629823|gb|EHJ78364.1| putative poly [Danaus plexippus]
Length = 616
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 34/343 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E L +++ I ++DF+A+ + TG S VS FD+P Y
Sbjct: 2 EVTRKNFKEVLPLVRDSIQAADFLAIDTEFTGLMSG--RDVSMFDSPPEYYATLLNGTAD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF +C F + + + YNF++FPR P F CQ+S L +A + FD
Sbjct: 60 FLLIQFGLCTFYWDEKEKQYMNDAYNFYVFPRGR---PGPDRLFMCQSSSLDFLASQDFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GISY++E E+ ++ + + + V I+ + +V+H+
Sbjct: 117 FNKLIREGISYMTEPTEAKLREELTEKQK--KSVNEKDCIPIPEEHKVQIDNICKKVRHF 174
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ + +++ + +R+++ ++ G R + V S KMLE+ + VL
Sbjct: 175 IDFENEDEMEIDRCNAFIRRLLF--QELGKRFHNEVFVES--------KMLENKNRVLK- 223
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
+ K G + R V ++E +EQ + GF V +IS S K ++
Sbjct: 224 -VSKIKCGSDRMNRDVQKKNEE-------------WEQFEDAVGFSRVARMISQSGKLVI 269
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
HN L D + F PLP + N F FP+++D Y+
Sbjct: 270 GHNMLLDVMHTLNHFFQPLPTDYNTFKEFTHCMFPRILDTKYM 312
>gi|321455833|gb|EFX66955.1| hypothetical protein DAPPUDRAFT_203845 [Daphnia pulex]
Length = 582
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 169/379 (44%), Gaps = 35/379 (9%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+TK+NF L I + + + FIA+ + TG +++S+ DTP Y K + F
Sbjct: 3 VTKSNFRSVLEGIDDELEKASFIAIDTEFTGLNDGGSNKLSSLDTPAERYKKVLNGSSEF 62
Query: 92 QILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +I F+ + SK + YNF++FP + G+ F Q S L+ +A +GFDF
Sbjct: 63 LVVQFGLSIFTFEKKVSKYVNKTYNFYVFPHTSMG-GLCDKKFMSQASSLSFLATQGFDF 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
N I +GI YL+ +E VK+++ + K S+ V S+V
Sbjct: 122 NKLIKEGIPYLNLLEEEKVKLKL------EKRNKFSN--------------VDSKVPCHN 161
Query: 210 NACTDSDIKTEALVTSLRKIVL-----GGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
N ++ + V + V G P++ CS Q +L+ +
Sbjct: 162 NEISEIPPDQKGYVDHIVSKVTTFFESNGNDEEKSPAILEFQCSSLQSELIFSHVRTRYP 221
Query: 265 VLVPLIIPAK---GGGTQAVRAVLTSSDEDKDLL-KRELQTFEFEQNKRVRGFREVIDLI 320
L L + AK GG T V+ +S + +K+ + K+ L E + + GF EV+ I
Sbjct: 222 NL--LFVSAKKTCGGCTVTVKKAASSCNLEKESVDKKSLPAAEKPRIEDYMGFSEVVRKI 279
Query: 321 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 380
+ S K +V HN L D I +F PLP + EF FP+VID ++ P +
Sbjct: 280 TNSGKLVVGHNMLLDLCHILGQFCEPLPEDYEEFKAMTNTFFPRVIDTK-VMATTKPFRD 338
Query: 381 MTNISATIAYLKNRFFAPI 399
+ SA LK AP
Sbjct: 339 LLPNSALGPLLKALLKAPF 357
>gi|348540666|ref|XP_003457808.1| PREDICTED: poly(A)-specific ribonuclease PARN [Oreochromis
niloticus]
Length = 679
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 167/363 (46%), Gaps = 30/363 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ N+ + L+ + + I +DF+A+ + +G P T DTPE Y K K +
Sbjct: 2 EVTRKNYKDCLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I P+NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDQAKSKYITKPFNFYIFPK-PFNRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E+ ++ + HA + +S + + V K
Sbjct: 121 FDFNKVFCHGIPYLNQEEEAQLREQT-EERRNQHANGVGTPSFISPSSSKGSSHVPEEHK 179
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSDV 265
+ N + K EAL+ + K ++ ++ C+ Q +L+ + L F
Sbjct: 180 DFINKVVE---KVEALLGNSEK------------TLDLEPCTGFQRKLIYQTLNWKFPKG 224
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
L + + + R + S ++++ +RE Q E EQ + GF VI IS S
Sbjct: 225 LHVETVETE----KKERYIQISKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKS 280
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM-T 382
K +V HN L D +F PLP ++ +F FP+++D L+ P K++ T
Sbjct: 281 GKLVVGHNMLLDVMHTIHQFYCPLPEDLQDFKEVTMCVFPRLLDTK-LMASTQPFKELIT 339
Query: 383 NIS 385
N S
Sbjct: 340 NTS 342
>gi|237649000|ref|NP_001153677.1| poly(A)-specific ribonuclease [Bombyx mori]
gi|224176033|dbj|BAH23570.1| similar to poly(A)-specific ribonuclease, PARN [Bombyx mori]
Length = 628
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 101/378 (26%), Positives = 160/378 (42%), Gaps = 45/378 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ + NF E+L + + +DF+ + + TG + VS FDTPE Y + +
Sbjct: 2 EVIRKNFKEALPLVAASVKKADFLVIDTEFTGIING--RDVSMFDTPEEYYKCTQRGSSE 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF +C F + + YNF+LFPR P F CQ+S L +A +GFD
Sbjct: 60 FLLIQFGLCAFHWNHKEKHYMNDAYNFYLFPRGS---PGPDRMFMCQSSSLDFLASQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSRVK 206
FN I DGISY++ ++ ++ + T S ++ V D ++E + ++V
Sbjct: 117 FNKLIKDGISYMT----VPIECKLRENLTERQKTYSKGKDSIKVPDEHKAYVEDICNQVH 172
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSD- 264
+ G M ID C+ L+ + L F D
Sbjct: 173 QFLEE-------------------------GQLDEMEIDKCNSFVRLLLFQELRARFKDK 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSD-EDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
+LV I V+ V + D ++ D LK+E + +FE GF +V +IS S
Sbjct: 208 ILVETKILENKNRLLNVKRVKSQDDLKNHDALKKEREWEDFED---AVGFSKVARMISES 264
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
+K +V HN L D + F PLP +F FP ++D Y + + P K N
Sbjct: 265 EKLVVGHNMLLDVMHTLNHFFQPLPAEYTQFKEFTHCMFPHILDTKY-MSSLPPFKDKVN 323
Query: 384 ISATIAYLKNRFFAPIEM 401
S L AP +
Sbjct: 324 SSILKHLLATLSAAPFSL 341
>gi|440801121|gb|ELR22146.1| ribonuclease, putative [Acanthamoeba castellanii str. Neff]
Length = 546
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 159/347 (45%), Gaps = 38/347 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++TK+NF L ++K I++SDF++ L+ TG + D E Y K K +
Sbjct: 2 EVTKSNFAAVLPDVKEAIAASDFLSFDLEFTGLTLGGYLDNHPVDLLEERYKKLKENSSA 61
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I QF + F A+ K +A +NF+LFPR G FTCQ + L + + FD
Sbjct: 62 FTITQFGLSAFTWDATENKYVARTWNFYLFPR---PYGWCDRRFTCQAASLQFLLEHKFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMA--VDHATKSSSSPALSV--ADTVFIERVRSR 204
FN IY+G+ YLS E ++ ++ + +D A++ + + D F+ +++
Sbjct: 119 FNKFIYEGVGYLSRYVEGKMRPQVEEEIQKLLDAASQEALPDIVPTNPRDVEFVAGIKAS 178
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ W + A + LR++V E G+ P + ++ +VQ
Sbjct: 179 IDGWLQGDGSEPLLLIAPNSFLRRLVY-QEVRGNYPELNVE-----KVQ----------- 221
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
GT ++ S+E+K + EL + ++ + GFR+V + +SAS+
Sbjct: 222 ------------GTWDNMSISRMSEEEKARRRAELVQQKRDEFEAAIGFRQVWEAMSASR 269
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
KP+V HN L D + + F LP + F ++ FP + D ++
Sbjct: 270 KPVVGHNLLLDLLYSYFHFEDRLPSSFRNFKVAINKVFPTIFDTKHI 316
>gi|427786977|gb|JAA58940.1| Putative polya-specific ribonuclease parn [Rhipicephalus
pulchellus]
Length = 637
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 48/437 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAE 89
++T NF E +K + ++ F+A+ + TG H +DTPE Y K + ++
Sbjct: 2 EVTAENFQEQFGVLKAALENASFVAIDCEFTGLELERSTH---AYDTPEERYRKLRESSL 58
Query: 90 RFQILQFAICPFKLQASKVIAYPY---NFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F ++Q +C F+ K Y Y NF++ P+ +K G P F CQ S L +++ G
Sbjct: 59 DFLVVQVGVCVFQHDKEKR-GYKYKAFNFYVCPKQTVK-GAPDRMFRCQASSLQFLSQHG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT--KSSSSPALSVA---------DT 195
FDFN G+SYL A+E+T ++ ++ HA K SP + DT
Sbjct: 117 FDFNKLFSHGVSYL-RAEEAT---QLSQALSERHAQQLKEVGSPNNGPSKISKVEVPKDT 172
Query: 196 V-FIERVRSRVKHWKNAC--TDSDIKTEALVTSLRKIVLGGEQFGSRP--------SMTI 244
FI+ V +V+ + ++ T+ D++ E V S E R ++ +
Sbjct: 173 QQFIDDVLDKVQQFLDSASGTEVDMEDEDGVGSAASKQDSPEDLCMREASPKKDGSTLHL 232
Query: 245 DVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
C+ + +L+ + + V L + G + +T + E++ Q E
Sbjct: 233 SECNGFKRKLIYQEVNARFGDKVQLNTESDSDGMLHIAVRITGTPEEQRARLELRQKKER 292
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
E + GF V++L+++S K +V HN L D + S+F+ LP + NEF +R AFP
Sbjct: 293 EDLELAHGFGRVLELLASSGKLIVGHNMLLDIMHLLSQFVDDLPKDYNEFKSMVRAAFPC 352
Query: 365 VIDVNYLLKD--IGPVKKMTNISATIAYLKNR--FFAPIEMEIPNQANENEGKIH----- 415
++D L D I T + + L+NR P+E E + N+ K H
Sbjct: 353 LVDTKVLASDDAIKDSFVTTALELLLKQLRNRPSCVPPVESENGYGYSLNQTKYHEAGYD 412
Query: 416 ----GHNVVKICQLFGK 428
G ++ +CQ GK
Sbjct: 413 AYVTGMCLLGLCQQLGK 429
>gi|348686050|gb|EGZ25865.1| hypothetical protein PHYSODRAFT_540459 [Phytophthora sojae]
Length = 606
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 96/385 (24%), Positives = 168/385 (43%), Gaps = 52/385 (13%)
Query: 32 ITKTNFNESLSEIKNHIS--SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
+T+ NF + L++++ ++ + F+A+ + TG + + R DT E Y K K A E
Sbjct: 42 VTRHNFAKCLADLQKDLALPTCRFVAIDTEFTGLSPNEFEREQYLDTLEERYRKVKRAGE 101
Query: 90 RFQILQFAICPFKL-QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF + L Q + +NF++FPR G F CQ S L +++ GFD
Sbjct: 102 SFLVTQFGLSTVHLDQKDQFQIKTWNFYVFPR---PYGSLDERFLCQASSLQFLSEHGFD 158
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I DGI +++ A+ +K R+ +D TK + + LS F + V ++ W
Sbjct: 159 FNKFIGDGIPFVNLAKTPVMKKRLQR--RIDGLTKVNKNLQLSDDGVAFQKDVNEQLDQW 216
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ GG + G + L++ F ++V
Sbjct: 217 ---------------------IAGGAKKGEK--------------LLVPTRNSFYSMVVH 241
Query: 269 LIIPAKG------GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 322
+ +K V S ++L+ +++ E ++ + GF +VI+ +S
Sbjct: 242 ETVRSKASYLYSEAAEGGVEVSYVSKKIKEELIAAKVKDMRREMDEAI-GFSKVIEALSE 300
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY--LLKDIGPVKK 380
S+ P+V HN+L DF ++ +F PLP + EF L FP + D + L +G K
Sbjct: 301 SKLPVVGHNALLDFVYVFHQFYKPLPETLAEFKTQLLGLFPTIYDTKHVTLRSPLGDKLK 360
Query: 381 MTNISATIAYLKNRFFAPIEMEIPN 405
T +S+ Y++ E IP+
Sbjct: 361 STGLSSLFEYMRENVKPEPESLIPS 385
>gi|395515097|ref|XP_003761743.1| PREDICTED: poly(A)-specific ribonuclease PARN [Sarcophilus
harrisii]
Length = 667
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 173/380 (45%), Gaps = 38/380 (10%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 25 DFKNNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHSMDFLL 84
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK + SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 85 FQFGLCTFKYDSTDSKYIMKSFNFYVFPKP-FSRTSPDVKFVCQSSSIDFLANQGFDFNK 143
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVKHWK 209
+GI YL++ +E ++ + + + + S SP S V E + +
Sbjct: 144 VFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYVSPNASKCPVVIPEDQKKFI---- 199
Query: 210 NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 269
E +V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 200 ----------EKVVEKIEDLIQNEE----NKNLDLEPCTGFQRKLIYQTL----SWKYPK 241
Query: 270 IIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKP 326
I + T+ R ++ S ++++ +RE Q + EQ + GF VI I+ S K
Sbjct: 242 GIHVETLETEKKERYIVISKVDEEERKRREQQKYAKEQEELNDAVGFSRVIHAIANSGKL 301
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 386
++ HN L D +F PLP ++NEF FP+++D L+ P K + N +
Sbjct: 302 VIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTTCVFPRLLDTK-LMASTQPFKDIIN-NT 359
Query: 387 TIAYLKNRF----FAPIEME 402
++A L+ R F P ++E
Sbjct: 360 SLAELEKRLKEAPFNPPKVE 379
>gi|73958883|ref|XP_536966.2| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Canis
lupus familiaris]
Length = 638
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL+ +E + +++ A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNHEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V ++++ + ++ E RK++ + + +D + +
Sbjct: 181 IDQVVEKIENLLQSEESKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|149725913|ref|XP_001490195.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Equus
caballus]
Length = 637
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPPVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDYTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I+ V +++ + D ++ E RK++ + + ++ + +
Sbjct: 181 IDHVIEKIEDLLQSEEDKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|332245327|ref|XP_003271812.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Nomascus
leucogenys]
Length = 531
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDMEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAVEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSTPDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T +T + +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLKDE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R + +S + + K + RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQHRRYLQNTSCDRESCWKENILL-------SARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHRLFPVLIDTKSVTKDI 311
>gi|155371965|ref|NP_001094588.1| poly(A)-specific ribonuclease PARN [Bos taurus]
gi|223590122|sp|P69341.2|PARN_BOVIN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|151556271|gb|AAI50016.1| PARN protein [Bos taurus]
gi|296473404|tpg|DAA15519.1| TPA: poly(A)-specific ribonuclease PARN [Bos taurus]
Length = 638
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ D F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|301765382|ref|XP_002918111.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ailuropoda
melanoleuca]
Length = 638
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ + + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + +D + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|417403544|gb|JAA48572.1| Putative polya-specific exoribonuclease parn [Desmodus rotundus]
Length = 638
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 175/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYINSKYIIKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ A+ + + ++S ++V + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTVPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|291390633|ref|XP_002711808.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 638
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 177/383 (46%), Gaps = 34/383 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YL + +E ++ + +S ++ A ++A ++ S K
Sbjct: 121 FDFNKVFCNGIPYLIQEEERQLREQYDE-------KRSQTNGAGTLA---YVSPNAS--K 168
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
H D + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 169 HPVTIPEDQKKFIDQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SRK 220
Query: 267 VPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 221 YPKGIHVETLETEKKERYIVISKVDEEERKRREQQRLAKEQEELNDAVGFSRVIHAIANS 280
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
K ++ HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 281 GKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTSCVFPRLLDTK-LMASTQPFKDIIN 339
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F+P ++E
Sbjct: 340 -NTSLAELEKRLKETPFSPPKVE 361
>gi|344292088|ref|XP_003417760.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Loxodonta
africana]
Length = 638
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 172/391 (43%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDHTESKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ A+ + + ++S + V + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVMVPEEQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + I+ + +
Sbjct: 181 IDQVVEKIEDLLQSDENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHIETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFRE 315
R ++ S ++++ +RE Q E E GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKELEGLNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|296219599|ref|XP_002755955.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Callithrix
jacchus]
Length = 639
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + + + A+ + + ++S ++V + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTVPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I+ V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDEVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 332 RPFKDIIN-NTSLAELEKRLKETPFSPPKVE 361
>gi|440902237|gb|ELR53050.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Bos grunniens mutus]
Length = 531
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 49/351 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K +A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFSD 264
W + + D T + + +VQLVL K L D
Sbjct: 169 TRWLDLAEEGDWMTLPGIAGFQAF---------------------EVQLVLRKALPDIWT 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
VL + K TQ + T+S + + K ++ RGF ++ ++
Sbjct: 208 VLRDQGVIVKKVSTQHRWYLETTSCDRESCWKEKILL-------SARGFSVFFQMLVKAR 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
KPLV HN + D +H KF PLP +EF ++ FP +ID + KDI
Sbjct: 261 KPLVGHNMMMDLLHLHEKFFRPLPETYDEFKLNIHNLFPVLIDTKNVTKDI 311
>gi|410985167|ref|XP_003998895.1| PREDICTED: poly(A)-specific ribonuclease PARN [Felis catus]
Length = 638
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 172/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLQKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + T S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNASKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|343962531|dbj|BAK62853.1| poly(A)-specific ribonuclease [Pan troglodytes]
Length = 531
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKVVIDQVTRWLE 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T +T + +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLKDE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + N+F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|114610057|ref|XP_001151114.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 3 [Pan troglodytes]
gi|397471750|ref|XP_003807445.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 2 [Pan paniscus]
Length = 531
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/348 (27%), Positives = 156/348 (44%), Gaps = 53/348 (15%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
+ +GI Y++E QE ++ + GN + SSP D I+ V +V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHDILTGN-------WRVRSSP-----DKDQIKVVIDQVTRW 171
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLV 267
+ D T +T + +VQLVL+ L + VL
Sbjct: 172 LELAKEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLK 210
Query: 268 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
+ K Q R L ++ D++ +E RGF ++ +QKPL
Sbjct: 211 DEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKPL 263
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
V HN + D +H KF PLP + N+F ++ FP +ID + KDI
Sbjct: 264 VGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|334333099|ref|XP_001375777.2| PREDICTED: poly(A)-specific ribonuclease PARN [Monodelphis
domestica]
Length = 709
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 175/385 (45%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++ ++NF +L ++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EMIRSNFKNNLHKVYQAIEEADFLAIDGEFSGISDGPSVTALTNGFDTPEERYHKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK + SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDSTDSKYIMKSFNFYVFPKP-FSRTSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S + E
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYISPNASKCPVIIPE----- 175
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
D + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 176 ---------DQKKFIDKVVEKIEDLIQNEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTIHQFYCPLPEDLSEFKEVTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKEAPFNPPKVE 361
>gi|301111876|ref|XP_002905017.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
gi|262095347|gb|EEY53399.1| Poly(A)-specific ribonuclease PARN-like protein [Phytophthora
infestans T30-4]
Length = 589
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 163/379 (43%), Gaps = 40/379 (10%)
Query: 32 ITKTNFNESLSEIKN--HISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAE 89
+T+ NF++ L +++ + + +A+ + TG + R DT E Y K K A E
Sbjct: 33 VTRHNFSKHLKDLQKDLQLPTCRLVAIDTEFTGLSPNELEREQYLDTLEERYHKVKRAGE 92
Query: 90 RFQILQFAICPFKL-QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I QF + L Q + +NF++FPR G F CQ S L +++ GFD
Sbjct: 93 SFLITQFGLSIVHLDQKDQFHIKTWNFYVFPR---PYGSLDERFLCQASSLQFLSEHGFD 149
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I DGI +++ A+ +K R+ +D TK + + LS F + V+ ++ W
Sbjct: 150 FNKFIGDGIPFVNLAKTPAMKKRLQR--RIDGLTKVNKNLQLSDDGMAFQKDVKQQLAKW 207
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
K E L R S SM + + +
Sbjct: 208 ---IAGGAKKGEKLFVPTR---------NSFYSMIVHETARAKASY-------------- 241
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
L A GG Q DE L+ +++ E ++ + GF +VI+ +S S+ P+V
Sbjct: 242 LYSEAADGGVQVSYLSKKMKDE---LIAAKVKEMRKEMDEAI-GFSKVIEALSESKLPVV 297
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY--LLKDIGPVKKMTNISA 386
HN+L DF ++ +F PLP + EF L FP + D + L +G K T +S+
Sbjct: 298 GHNALLDFVYVFHQFCKPLPETLAEFKTQLLELFPTIYDTKHVTLRSPLGEKLKSTGLSS 357
Query: 387 TIAYLKNRFFAPIEMEIPN 405
Y++ E IP+
Sbjct: 358 LFEYMRENVKPEPESLIPS 376
>gi|355562180|gb|EHH18812.1| hypothetical protein EGK_15481, partial [Macaca mulatta]
gi|355749010|gb|EHH53493.1| hypothetical protein EGM_14142, partial [Macaca fascicularis]
Length = 530
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L D VL
Sbjct: 174 LAKEGDWMTLPGIAGFQAF---------------------EVQLVLRQALPDIWTVLKDE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLQNTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|402868642|ref|XP_003898404.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Papio anubis]
Length = 531
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L D VL
Sbjct: 174 LAKEGDWMTLPGIAGFQAF---------------------EVQLVLRQALPDIWTVLKDE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLQNTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|380813232|gb|AFE78490.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|383411569|gb|AFH28998.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
gi|384943224|gb|AFI35217.1| poly(A)-specific ribonuclease PARN isoform 1 [Macaca mulatta]
Length = 639
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 174/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + + + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKEIPFSPPKVE 361
>gi|403284980|ref|XP_003933822.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 531
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + SDF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQESDFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSMFSAIEGEANKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H S + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILSGNWRVRSSLDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGIAGFQAF---------------------EVQLVLRQALHNIWTVLKDD 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L S+ D++ +E +GF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLQSTSCDRESCWKENILLS------AKGFSVFFHMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D ++H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|426235017|ref|XP_004011487.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Ovis aries]
Length = 529
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 154/351 (43%), Gaps = 49/351 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSI 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K IA+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYIAHSCNFFLFPT---TFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFSD 264
W + + D T + + +VQLVL K L +
Sbjct: 169 TRWLDLAEEGDWMTLPGIAGFQAF---------------------EVQLVLRKALPEIWT 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
VL + K TQ R L ++ D++ +E RGF ++ ++
Sbjct: 208 VLRDQGVIVKKVSTQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAR 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
KPLV HN + D +H KF PLP + +EF ++ FP +ID + KDI
Sbjct: 261 KPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLIDTKNVTKDI 311
>gi|345784478|ref|XP_541182.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Canis lupus familiaris]
Length = 531
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 152/346 (43%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVLGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRHSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HNILTGNWRVRSSLDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L D VL
Sbjct: 174 LAEEGDWMTLPGIAGFQAF---------------------EVQLVLRQALPDIWTVLRDQ 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
I K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 213 GIIVKKVSKQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPILIDTKNVTKDI 311
>gi|410217846|gb|JAA06142.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410256666|gb|JAA16300.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410287506|gb|JAA22353.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350583|gb|JAA41895.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
gi|410350585|gb|JAA41896.1| poly(A)-specific ribonuclease (deadenylation nuclease) [Pan
troglodytes]
Length = 639
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKFDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|426355066|ref|XP_004044958.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Gorilla gorilla gorilla]
Length = 513
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 153/346 (44%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F +
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTV 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKHQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T +T + +VQLVL+ L + VL
Sbjct: 174 LAKEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLKDE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L ++ D++ +E RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|348584110|ref|XP_003477815.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 1 [Cavia
porcellus]
Length = 637
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 171/391 (43%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I + NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ L P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDCTDSKYIMKSFNFYVFPK-PLNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + + E RK++ + + I+ + +
Sbjct: 181 IDQVVEKIEDLLQSEANKTLDLEPCTGFQRKLIYQTLSWKYPKGIHIETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S +++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVNEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K +V HN L D +F PLP ++ EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDLKEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFSPPKVE 361
>gi|327287978|ref|XP_003228705.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Anolis
carolinensis]
Length = 593
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 53/393 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T++NF ++L+++ I +DF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EVTRSNFKDNLNKVYAAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK L SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDLAESKYIMKSFNFYIFPK-PFNRTSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKV----------RMGNPMAVDHATKSSSSPALSVADTV 196
FDFN +GI YL++ +E ++ R+G+ +S +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLQEQYEEKRSQAGRVGSLSFASPNAQSKCPVTIPEDQKT 180
Query: 197 FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
FI++V RV D+ ++ E S+ ++ C+ Q +L+
Sbjct: 181 FIDKVVDRV--------DTLLQNE-----------------ESASLELEPCTGFQRKLIY 215
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR---ELQTFEFEQNKRVRGF 313
+ L P I + T+ + S D++ KR + Q E E+ K GF
Sbjct: 216 QTL----SWKYPKGIHVETLETEKKERYIIVSKVDEEERKRREQQRQAKEQEELKDAVGF 271
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
VI ++ S K +V HN L D +F PLP ++ EF FP+++D L+
Sbjct: 272 SRVIHAMANSGKLVVGHNMLLDVMHTIHQFYCPLPEDLGEFKELTTCVFPRLLDTK-LMA 330
Query: 374 DIGPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + + + ++A L+ R F+P +E
Sbjct: 331 TTQPFKDLIS-NTSLAELEKRVKETPFSPPNVE 362
>gi|332845316|ref|XP_510832.3| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
troglodytes]
Length = 639
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|21751916|dbj|BAC04070.1| unnamed protein product [Homo sapiens]
gi|119567997|gb|EAW47612.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_a [Homo sapiens]
Length = 531
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/348 (27%), Positives = 155/348 (44%), Gaps = 53/348 (15%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F +
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTV 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF+LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
+ +GI Y++E QE ++ + GN + SSP D I+ V V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIRHDILTGN-------WRVRSSP-----DKDQIKVVIDEVTRW 171
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLV 267
+ D T +T + +VQLVL+ L + VL
Sbjct: 172 LELAKEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLK 210
Query: 268 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
+ K Q R L ++ D++ +E RGF ++ +QKPL
Sbjct: 211 DEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSVFFQMLVKAQKPL 263
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
V HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 264 VGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDI 311
>gi|4505611|ref|NP_002573.1| poly(A)-specific ribonuclease PARN isoform 1 [Homo sapiens]
gi|60390262|sp|O95453.1|PARN_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Deadenylating nuclease; AltName: Full=Deadenylation
nuclease; AltName: Full=Polyadenylate-specific
ribonuclease
gi|3776076|emb|CAA06683.1| poly(A)-specific ribonuclease [Homo sapiens]
gi|29477165|gb|AAH50029.1| PARN protein [Homo sapiens]
gi|119605516|gb|EAW85110.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Homo sapiens]
gi|189054660|dbj|BAG37510.1| unnamed protein product [Homo sapiens]
gi|325463607|gb|ADZ15574.1| poly(A)-specific ribonuclease (deadenylation nuclease) [synthetic
construct]
Length = 639
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|85544056|pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
gi|85544057|pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
gi|85544060|pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
gi|85544061|pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
gi|85544062|pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
gi|85544063|pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>gi|397525565|ref|XP_003832732.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Pan
paniscus]
Length = 639
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|197102834|ref|NP_001125357.1| poly(A)-specific ribonuclease PARN [Pongo abelii]
gi|60390294|sp|Q5RC51.1|PARN_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|55727812|emb|CAH90659.1| hypothetical protein [Pongo abelii]
Length = 639
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 174/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSPPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFSPPKVE 361
>gi|332240351|ref|XP_003269351.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Nomascus
leucogenys]
Length = 639
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVPIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>gi|432108569|gb|ELK33278.1| Poly(A)-specific ribonuclease PARN [Myotis davidii]
Length = 604
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 100/387 (25%), Positives = 175/387 (45%), Gaps = 52/387 (13%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 108 DFKSHLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHSMDFLL 167
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 168 FQFGLCAFKYDCIHSKYIIKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 226
Query: 152 CIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVR 202
+GI YL++ +E + +++ A+ + + ++S +++ + FI++V
Sbjct: 227 VFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKFIDQVV 286
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
++ E L+ S ++ +D C+ Q +L+ + L
Sbjct: 287 EKI--------------EDLLQS-----------EENKNLDLDPCTGFQRKLIYQTL--- 318
Query: 263 SDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDL 319
+ P I + T+ R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 319 -NWKYPKGIHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHA 377
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 379
I+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 378 IANSGKLIIGHNMLLDVMHTVHQFCCPLPEDLNEFKEMTTSVFPKLLDTK-LMASTQPFK 436
Query: 380 KMTNISATIAYLKNRF----FAPIEME 402
+ N + ++A L+ R F P ++E
Sbjct: 437 DIIN-NTSLAELEKRLKETPFNPPKVE 462
>gi|440896814|gb|ELR48641.1| Poly(A)-specific ribonuclease PARN, partial [Bos grunniens mutus]
Length = 617
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 50/386 (12%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIERVR 202
+GI YL++ +E ++ + A+ + + ++S +++ D FI++V
Sbjct: 121 VFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKFIDQVV 180
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+++ + + ++ E RK++ + + ++ + +
Sbjct: 181 EKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE--------- 231
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 320
R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 232 -------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAI 272
Query: 321 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 380
+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P K
Sbjct: 273 ANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKD 331
Query: 381 MTNISATIAYLKNRF----FAPIEME 402
+ N + ++A L+ R F P ++E
Sbjct: 332 IIN-NTSLAELEKRLKETPFNPPKVE 356
>gi|395535236|ref|XP_003769636.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Sarcophilus harrisii]
Length = 533
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 152/350 (43%), Gaps = 45/350 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAA 88
++ F + L ++ I SDF+ + ++ TG S + S FD+P YLK K +
Sbjct: 2 ELGADGFEQKLPLLEELILGSDFLGLDIEFTGLRSIFPKGQQTSLFDSPAEWYLKTKQSI 61
Query: 89 ERFQILQFAICPFK---LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F + Q + F +++K IA+ YNF LFP +G+ F+ Q S + + +
Sbjct: 62 QQFTVCQIGLSMFSSMGRKSNKYIAHSYNFFLFPT---TLGIMDSEFSFQASSILFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE +K + + S D ++ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIK----------QDLLTGNWKVRSTLDKDQMKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
W + D T +T + + + + + + V +++D V
Sbjct: 169 TRWLEMAQEGDWMTLPDITGFQ-------------AFEVQLVLRQALPTVWTLMKD-RGV 214
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
LV + ++ R L +S D D +RE RGF ++ ++K
Sbjct: 215 LVKKV-------SRQYRWCLENSSRDHDDCRREKILLS------ARGFAVFFQMLVKAKK 261
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
PLV HN + D +H KF PLP + +F ++ FP +ID + K+I
Sbjct: 262 PLVGHNMMMDLLHLHEKFYRPLPESYEQFKLNIHSLFPVLIDTKNVTKEI 311
>gi|281340599|gb|EFB16183.1| hypothetical protein PANDA_006508 [Ailuropoda melanoleuca]
Length = 615
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 168/385 (43%), Gaps = 50/385 (12%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQIL 94
F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 1 FKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYKKLKKHSMDFLLF 60
Query: 95 QFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 61 QFGLCAFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKV 119
Query: 153 IYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRS 203
+GI YL++ +E + +++ + + + ++S +++ + FI++V
Sbjct: 120 FRNGIPYLNQEEERQLREQYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKFIDQVVE 179
Query: 204 RVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263
+++ + + ++ E RK++ + + +D + +
Sbjct: 180 KIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKE---------- 229
Query: 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 230 ------------------RYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLIIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFNPPKVE 354
>gi|355709311|gb|AES03549.1| polyA-specific ribonuclease [Mustela putorius furo]
Length = 482
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 168/382 (43%), Gaps = 50/382 (13%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQILQFA 97
+L ++ I +DF A+ + +G P T FDTPE Y K K + F + QF
Sbjct: 1 NLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHSMDFLLFQFG 60
Query: 98 ICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
+C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN +
Sbjct: 61 LCTFKYDHTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRN 119
Query: 156 GISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSRVK 206
GI YL++ +E + +++ A+ + + ++S +++ + FI++V +++
Sbjct: 120 GIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIE 179
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ + ++ E RK++ + + +D + +
Sbjct: 180 DLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKE------------- 226
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQ 324
R ++ S ++++ +RE Q EQ + GF VI I+ S
Sbjct: 227 ---------------RYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSG 271
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNI 384
K ++ HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 272 KLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN- 329
Query: 385 SATIAYLKNRF----FAPIEME 402
+ ++A L+ R F P ++E
Sbjct: 330 NTSLAELEKRLKETPFNPPKVE 351
>gi|168019851|ref|XP_001762457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686190|gb|EDQ72580.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 594
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 57/366 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPW-----------HRVSTFDTPE 78
++T NF E L I++ ISS FIA+ + +G + + P R D E
Sbjct: 2 EVTYGNFEELLPCIESAISSCQFIAIDGEFSGLTLTHPRFKGALISITDSRREEVLDDAE 61
Query: 79 TAYLKAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
Y + + +A+ F I+QF + F ++ S A +NF+ FPR G FTCQ
Sbjct: 62 QLYARVRTSAQHFLIMQFGLSAFHWNVEDSCYQAQTFNFYTFPRSN---GGSDVRFTCQA 118
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV---- 192
S L + + GFDFN IY GI Y++ Q + +D +++ S V
Sbjct: 119 SSLDFLREHGFDFNKFIYSGIPYVTLEQ-----------LKLDKKSEARDSRDPIVLTKE 167
Query: 193 ADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 252
D F+E+ V+ W + +E+ + +VL PS S +
Sbjct: 168 EDRNFVEQQLETVRTWVERTVAREASSESSDSDPATLVL-------EPSN-----SYLRA 215
Query: 253 QLVLKMLEDF--SDVLVPLI-IP-AKGGGTQAVRAV--LTSSDEDKDLLKRELQTFEFEQ 306
L + ++F SD V L+ P A+ + RA + ++ E + KR+ +Q
Sbjct: 216 ALYQHLEQEFGKSDFFVELLRTPGARKSSLKLTRATSAVVAAQESEVAAKRQ------KQ 269
Query: 307 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QV 365
+R +GF V+ ++ KP+V HN L D +++ +F+ LPP ++EF ++L FP V
Sbjct: 270 LERSKGFANVMQCLTTCNKPIVGHNMLLDLAYLYQQFIGTLPPTLDEFRAHVKLLFPGGV 329
Query: 366 IDVNYL 371
D YL
Sbjct: 330 YDTKYL 335
>gi|334324288|ref|XP_001381461.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Monodelphis domestica]
Length = 615
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 152/344 (44%), Gaps = 45/344 (13%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F + L ++ I +SDF+ + ++ TG S + S FD+P YLK + + ++F +
Sbjct: 8 FEQKLPMLEELILASDFLGLDIEFTGLRSIYPKGQQTSLFDSPAEWYLKTRRSIQQFTVC 67
Query: 95 QFAICPFK---LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F +++K +A+ YNF LFP +G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSMFSNMGRKSNKYLAHSYNFFLFPTT---LGIMDSEFSFQASSILFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+ +GI Y++E QE +K + + + S D ++ V V W
Sbjct: 125 FLKNGIPYMNEEQEKKIKQDL----------LTGNWKVRSTLDKDQMKVVIDEVTRWLEM 174
Query: 212 CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLII 271
+ D T +T + + + + + + V +++D VLV +
Sbjct: 175 AQEGDWMTLPDITGFQ-------------AFEVQLVLRQALPTVWTLMKD-KGVLVKKV- 219
Query: 272 PAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHN 331
++ R L +S D D +RE RGF ++ ++KPLV HN
Sbjct: 220 ------SRQYRWCLENSSRDHDDCRREKILLS------ARGFAVFFQMLVKAKKPLVGHN 267
Query: 332 SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
+ D +H KF PLP + +F ++ FP +ID + K+I
Sbjct: 268 MMMDLLHLHEKFYRPLPESYEQFKLNIHGLFPVLIDTKNVTKEI 311
>gi|71043644|ref|NP_001020895.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
gi|68533833|gb|AAH99137.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1
[Rattus norvegicus]
Length = 341
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSVEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T ++ + +VQLVL+ L + VL
Sbjct: 174 LAEEGDQMTLPGISGFQAF---------------------EVQLVLRQALPNIWTVLKEE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K +Q R L + D+ +E RGF ++ +QKPLV
Sbjct: 213 GVIVK-KVSQPHRWYLEHASCDQVTCWKEQILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMTDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|390462231|ref|XP_002806785.2| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1 [Callithrix
jacchus]
Length = 510
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 151/346 (43%), Gaps = 50/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + SDF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELLHESDFVGLDIEFTGLRSNLSGP--QISLFDLPSEWYLKTRQSVQQFTI 65
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 66 CQIGLSMFSALEGEENKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 122
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H S + S D I+ V V W +
Sbjct: 123 KFLKNGIPYMNEEQEKKIR----------HDILSGNWKVRSSLDKDQIKVVIDEVTRWLD 172
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L + VL
Sbjct: 173 LAKEGDWMTLPGIVGFQAY---------------------EVQLVLRQALHNIWTVLKDD 211
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L S+ D++ +E +GF ++ +QKPLV
Sbjct: 212 GVIVKKVSKQH-RWYLQSTSCDRESCWKENILLS------AKGFSVFFHMLVKAQKPLVG 264
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D ++H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 265 HNMMMDLLYLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 310
>gi|311243695|ref|XP_001926376.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Sus scrofa]
Length = 531
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 153/351 (43%), Gaps = 49/351 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 IGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + +++K +A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GFD+N + +GI Y++E QE ++ H + + S D I+ V V
Sbjct: 119 GFDYNKFLKNGIPYMNEEQEKKIR----------HNILTGNWRVRSSLDKDQIKVVIDEV 168
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL-KMLEDFSD 264
W + + D T +T + +VQLVL K L +
Sbjct: 169 TRWLDLAEEGDWMTLPGITGFQAF---------------------EVQLVLRKALPNIWT 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
VL + K Q R L ++ D++ +E RGF ++ +Q
Sbjct: 208 VLRDQGVIVKKVSKQH-RWYLENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQ 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
KPLV HN + D +H KF PLP + +F ++ FP +ID + KD+
Sbjct: 261 KPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILIDTKNVTKDV 311
>gi|354468609|ref|XP_003496745.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Cricetulus
griseus]
Length = 625
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 41/383 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFI- 174
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ ++ + + E + S+ ++ C+ Q +L+ + L
Sbjct: 175 -------------DQVIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SWK 213
Query: 267 VPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
P I + T+ R ++ S ++++ +RE + + EQ + GF VI I+ S
Sbjct: 214 FPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIANS 273
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
+K +V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 274 RKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDIIN 332
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F P ++E
Sbjct: 333 -NTSLAELEKRLKETPFDPPKVE 354
>gi|354468611|ref|XP_003496746.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Cricetulus
griseus]
Length = 633
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 176/383 (45%), Gaps = 41/383 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFI- 174
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ ++ + + E + S+ ++ C+ Q +L+ + L
Sbjct: 175 -------------DQVIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SWK 213
Query: 267 VPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
P I + T+ R ++ S ++++ +RE + + EQ + GF VI I+ S
Sbjct: 214 FPKGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIANS 273
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
+K +V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 274 RKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDIIN 332
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F P ++E
Sbjct: 333 -NTSLAELEKRLKETPFDPPKVE 354
>gi|350403678|ref|XP_003486873.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Bombus impatiens]
Length = 653
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/346 (24%), Positives = 155/346 (44%), Gaps = 45/346 (13%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ +NF+ I+N I+++ FIA+ + +G S + S FDT Y+ K
Sbjct: 1 MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHSERNLKNSLFDTLNDRYMAWKRNI 60
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++F I+QF I F S A ++F+LFPR + + + + + + + K G
Sbjct: 61 QQFVIVQFGITTFYRVPSNNAYKADSFSFYLFPR---SIPLKNRQLSWEVEAIDFLYKHG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN + GISY+ E ES ++ + H + LS + + +S+V
Sbjct: 118 FDFNKFLVGGISYIDETDESLLRDHIA------HGDVENYLSLLSYDEEENFKECKSKVY 171
Query: 207 HW-KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
W N ++ +K E ++T + + VL + + +++D+
Sbjct: 172 EWISNKLENAPLKLE-VITPMVQYVLHKD-----------------------LRNNYNDI 207
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
+ +++ + SS+ DL K+ E GF +V L+S+S+K
Sbjct: 208 WIT-------SDNKSINVMKISSNAQDDLFKK--GNLEEALLDVYLGFSKVFKLLSSSKK 258
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
++ HN L D F+H +F PLP + EF ++ FPQ+ D +L
Sbjct: 259 TIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYDTKFL 304
>gi|224070057|ref|XP_002197536.1| PREDICTED: poly(A)-specific ribonuclease PARN [Taeniopygia guttata]
Length = 638
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 176/385 (45%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++ ++NF ++L+++ I SDF+A+ + +G P T FDTPE Y K K +
Sbjct: 2 EVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDETEEKYIMKSFNFYIFPKP-FNRNSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + S S SP + E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V E +V + ++ S+ ++ C+ Q +L+ + L
Sbjct: 181 V--------------EKVVEQIEDLLKN----EESESLELEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKG-GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + + R ++ + ++++ +RE Q EQ + GF V+ I+
Sbjct: 219 WKYPKGIHVETLESDKKERYIVITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K+M
Sbjct: 279 NSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFKEM 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F+P ++E
Sbjct: 338 IN-NTSLAELEKRLKEVPFSPPKVE 361
>gi|296417778|ref|XP_002838529.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634469|emb|CAZ82720.1| unnamed protein product [Tuber melanosporum]
Length = 455
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 154/350 (44%), Gaps = 45/350 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SF---SSPWHRVSTFDTPETAYLKA 84
+++ +NF + L +I + I +S F+AV L+ +G +F ++P +R T E Y +
Sbjct: 2 EVSNSNFRQLLPDIISSIDNSCFVAVDLELSGIHKTFGPRNTPLNRKQTL---EERYKEV 58
Query: 85 KFAAERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
K AAERFQ+LQ +C + P+NF + P E K G+ + Q S + +
Sbjct: 59 KAAAERFQVLQLGLCAVSYDELLESYVCRPFNFFVNPNSEQKFGLDR-EYVVQASAIGFL 117
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
+ GF+FN+ GI YLS +E V R A + + A F++
Sbjct: 118 LESGFNFNSTYTSGIRYLSRREERYVIERENRL-----AQEFKEDIHIDEASQQFVKDFI 172
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+ ++ W D T V I G+ S I Q+V K
Sbjct: 173 AEIQEW----VDDPNPTFDFVN----ISTVGQGVNSYQKRLIH-------QVVRKTFPHL 217
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN-KRVRGFREVIDLIS 321
+ P + Q +R +D + +KR+ + FE + +R G R VID +
Sbjct: 218 QTLGRPTFV-------QVIR-----TDPAAEKMKRDERRARFETDVERGIGLRHVIDALF 265
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+SQKPL+ HN D ++ F+ PLP EF ++ +FP VID ++
Sbjct: 266 SSQKPLIGHNLFTDLINLYECFIGPLPDTSKEFAHAIHESFPIVIDTKFI 315
>gi|402907752|ref|XP_003916630.1| PREDICTED: poly(A)-specific ribonuclease PARN [Papio anubis]
Length = 621
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 45/364 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + + + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVK 379
P K
Sbjct: 332 QPFK 335
>gi|198278452|ref|NP_001030038.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Mus musculus]
gi|187957406|gb|AAI58034.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Mus
musculus]
Length = 531
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L + VL
Sbjct: 174 LAEEGDQMTLPGIAGFQAF---------------------EVQLVLRQALPNIWTVLKEE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K +Q R L + D+ +E RGF ++ +QKPLV
Sbjct: 213 WVIVK-KVSQPQRWYLEHASCDQVSCWKEQILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|355756570|gb|EHH60178.1| Poly(A)-specific ribonuclease PARN, partial [Macaca fascicularis]
Length = 634
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 38/380 (10%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVKHWK 209
+GI YL++ +E ++ + + + + S SP S E + V
Sbjct: 121 VFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFV---- 176
Query: 210 NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 269
+ +V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 177 ----------DQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SWKYPK 218
Query: 270 IIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKP 326
I + T+ R ++ S ++++ +RE Q EQ + GF VI I+ S K
Sbjct: 219 GIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKL 278
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 386
++ HN L D +F PLP +++EF FP+++D L+ P K + N +
Sbjct: 279 VIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NT 336
Query: 387 TIAYLKNRF----FAPIEME 402
++A L+ R F+P ++E
Sbjct: 337 SLAELEKRLKETPFSPPKVE 356
>gi|355709980|gb|EHH31444.1| Poly(A)-specific ribonuclease PARN, partial [Macaca mulatta]
Length = 634
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 170/386 (44%), Gaps = 50/386 (12%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F +L ++ I +DF A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVR 202
+GI YL++ +E + + + A+ + + ++S +++ + FI++V
Sbjct: 121 VFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFIDQVV 180
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+++ + + ++ E RK++ + + ++ + +
Sbjct: 181 EKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE--------- 231
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLI 320
R ++ S ++++ +RE Q EQ + GF VI I
Sbjct: 232 -------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAI 272
Query: 321 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 380
+ S K ++ HN L D +F PLP +++EF FP+++D L+ P K
Sbjct: 273 ANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKD 331
Query: 381 MTNISATIAYLKNRF----FAPIEME 402
+ N + ++A L+ R F+P ++E
Sbjct: 332 IIN-NTSLAELEKRLKEIPFSPPKVE 356
>gi|426381306|ref|XP_004057290.1| PREDICTED: poly(A)-specific ribonuclease PARN [Gorilla gorilla
gorilla]
Length = 634
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 151/341 (44%), Gaps = 34/341 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLANQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTLSWKMF 222
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 322
LV L + Q R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 223 PLVSLCL-------QKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIAN 275
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
S K ++ HN L D +F PLP +++EF FP
Sbjct: 276 SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFP 316
>gi|158285726|ref|XP_308433.4| AGAP007399-PA [Anopheles gambiae str. PEST]
gi|157020132|gb|EAA04629.5| AGAP007399-PA [Anopheles gambiae str. PEST]
Length = 631
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 154/360 (42%), Gaps = 43/360 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
ITK NF E L I+ I ++ F A+ + TG S + FDTPE YLK + +
Sbjct: 3 ITKQNFLEQLPSIREAIQNATFFAMDCEFTGLASD--RTIFPFDTPEEVYLKMVENSPPY 60
Query: 92 QILQFAICPFKLQAS------------KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYL 139
I+QF +C F+++ +V YNF+ +P+ + F+CQ +
Sbjct: 61 IIVQFGLCAFRVEPPGEEEEEKKDGQPRVSYQCYNFYCYPKGRTNV------FSCQGESM 114
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVK--------VRMGNPMAVDHATKSSSSPALS 191
+A GFDFN +G+SY +E +E + R N +A + + P +
Sbjct: 115 RFLADNGFDFNRLFREGLSYANETEEQRYRADLKDRQATRAANILAAAESDLTEEEPKVG 174
Query: 192 VADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQ 251
+ V + V + D+ E + S R+ ++ G C+ Q
Sbjct: 175 EVNDVNMIPV---PPEHQQQVDDTAASIEEFLQSDRQELIVGS------------CNAFQ 219
Query: 252 VQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR 311
+L+ +M+E V + +A++ S E++ L + +T E + +
Sbjct: 220 RKLIYQMIEQRYQRKVSTSTVSLENNQKAIKVERKRSTEEEQALDEQRRTRENDDLETNV 279
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
G V+ ++ ++K ++ HN L D ++ +F PLP + EF + FP ++D YL
Sbjct: 280 GLSLVLQELAKARKLIIGHNMLLDLFYVLRQFFKPLPADYQEFKKLTKEYFPLLLDTKYL 339
>gi|297679544|ref|XP_002817589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Pongo abelii]
Length = 532
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 157/362 (43%), Gaps = 53/362 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
Q I F +Q A+ NF+LFP G+ F+ Q S + + + GF++N +
Sbjct: 67 CQ--IGEFNIQL--YTAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYNKFL 119
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
+GI Y++E QE ++ H + + S D I+ V V W +
Sbjct: 120 KNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKVVIDEVTRWLDLAK 169
Query: 214 DSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIP 272
+ D T +T + +VQLVL+ L + VL +
Sbjct: 170 EGDWMTLPGITGFQAF---------------------EVQLVLRQALPNIWTVLKDEGVV 208
Query: 273 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNS 332
K Q R L ++ D++ +E RGF ++ +QKPLV HN
Sbjct: 209 VKKVSKQH-RWYLQNTSCDRESCWKENILLS------ARGFSAFFQMLVKAQKPLVGHNM 261
Query: 333 LNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK---MTNISATIA 389
+ D +H KF PLP + ++F ++ FP +ID + KDI V + +S T+
Sbjct: 262 MMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSVTKDIWKVMNRIALRRVSRTMG 321
Query: 390 YL 391
L
Sbjct: 322 RL 323
>gi|291397222|ref|XP_002715010.1| PREDICTED: poly(A)-specific ribonuclease (deadenylation nuclease)
[Oryctolagus cuniculus]
Length = 531
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 154/345 (44%), Gaps = 47/345 (13%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ++L ++ + +DF+ + ++ TG S S P H++S FD P YLK + + ++F I
Sbjct: 8 FEQNLPLLQELVLGADFVGLDIEFTGLRSSLSEP-HQISLFDLPSEWYLKTRRSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +++K +A+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSTIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ GI Y++E QE +K N +A D +SS D I+ V V W +
Sbjct: 124 KFLKKGIPYMNEEQEKKIK---QNILAGDWRVRSS-------LDKDQIKVVIDEVTRWLD 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 270
+ D T + + + Q R ++ ++R+ +V+K +
Sbjct: 174 PAEEGDSITLPGIAGFQAFEV---QLVLRQALPNIWTAQREQGVVVKKV----------- 219
Query: 271 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 330
++ R L + D+ +E RGF ++ +QKPLV H
Sbjct: 220 -------SRQHRWYLEHTSCDRASCWKEKILLS------ARGFSVFFQMLVRAQKPLVGH 266
Query: 331 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
N + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 267 NMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 311
>gi|354481849|ref|XP_003503113.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cricetulus griseus]
Length = 577
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 162/357 (45%), Gaps = 51/357 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I +DF+ + ++ TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIIDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
+ +GI Y++E QE ++ + GN +SS D I+ V +V W
Sbjct: 125 FLKNGIPYMNEEQEKKIRESILRGN-----WRVRSS-------LDKDQIKVVIDKVTRWL 172
Query: 210 NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVP 268
+ + D ++ L G I +VQ+VL+ L + VL
Sbjct: 173 DLAEEGD-----------RMTLPG----------IAGFQAYEVQMVLRQALPNIWTVLKD 211
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
+ K +Q R L ++ D+ RE E RGF ++ +QKPL+
Sbjct: 212 EGVIVK-KVSQPHRWYLENASCDQIRCWRE------EIVLSARGFSVFFKMLVRAQKPLI 264
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
HN + D +H KF PLP + +EF ++ FP +ID + KDI + +S
Sbjct: 265 GHNMMMDLLHLHEKFYKPLPESYDEFKQNIHNLFPVIIDTKNVTKDIWKEMRFPRVS 321
>gi|261335987|emb|CBH09267.1| putative poly(A)-specific ribonuclease (parn) [Heliconius
melpomene]
Length = 624
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 158/353 (44%), Gaps = 54/353 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E+L I I+ +DF+ + + TG + VS FD+P+ Y +
Sbjct: 2 EVTRKNFKEALPLIGESIAKADFLVIDTEFTGLING--RNVSMFDSPQEYYNTLLNGSTD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++Q+ +C F + + YNF LFPR P F CQ+S L +A +GFD
Sbjct: 60 FLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGH---PGPEKIFLCQSSSLDFLASQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRM----------GNPMAVDHATKSSSSPALSVADTVFI 198
FN I +GISY++E ES ++ + +P+ + K I
Sbjct: 117 FNKLIKEGISYMTEPIESRLRENLTERQSRILNDKDPIVIPDENKQQ------------I 164
Query: 199 ERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 258
E + +V+ + + +++ E +R+++ ++ GSR + + + K+
Sbjct: 165 EDICEKVRTFLDENKTDEMEIERCNAFIRRLLF--QELGSR--------FKDEAFVETKV 214
Query: 259 LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 318
LE+ S VL + R S + KD KRE + E+ + GF +V
Sbjct: 215 LENKSRVL------------KVTRIKSASDSKSKDDQKREKEW---EEFEEAVGFSKVAR 259
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+IS S+K +V HN L D S F PLP + F FP+++D Y+
Sbjct: 260 MISQSEKLVVGHNMLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKYM 312
>gi|444722573|gb|ELW63261.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Tupaia chinensis]
Length = 721
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 152/351 (43%), Gaps = 49/351 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
+ F +SL ++ + +DF+ + ++ TG + S P ++S FD P YLK + +
Sbjct: 3 VCADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSV 61
Query: 89 ERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
++F I Q + F + ++ K A+ NF LFP G+ F+ Q S + + +
Sbjct: 62 QQFTICQIGLSVFSSVEGESDKYEAHSCNFFLFP---TTFGVLDSEFSFQASSVQFLNQY 118
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GF++N + +GI Y++E QE +K H + S S D I+ V V
Sbjct: 119 GFNYNKFLKNGIPYMNEEQEKKIK----------HNLLTGSWKVRSSLDKDQIKAVIDEV 168
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSD 264
W + + D T +T + +VQLVL+ L +
Sbjct: 169 TRWLDQAEEGDWMTLPGITGFQAF---------------------EVQLVLRQALPNVWT 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
VL + K Q R L ++ D++ +E RGF ++ +Q
Sbjct: 208 VLKDRGVIVKKVSKQH-RWYLENTSCDRESCWKERILLS------ARGFSVFFQMLVKAQ 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
KPLV HN + D +H KF PLP + ++F ++ FP +ID + KD+
Sbjct: 261 KPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHHLFPVLIDTKNVTKDV 311
>gi|156351496|ref|XP_001622538.1| hypothetical protein NEMVEDRAFT_v1g1365 [Nematostella vectensis]
gi|156209100|gb|EDO30438.1| predicted protein [Nematostella vectensis]
Length = 459
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 53/363 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I ++NF++ L + I + F+AV + +G +S W + + D+P+ Y K K +
Sbjct: 2 EILRSNFSQCLPIVSEAIEEASFLAVDAEFSG-LNSHWKQQNALDSPQERYTKLKNTSHD 60
Query: 91 FQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+QF +C F +K IA P+NF++FPR ++ P F CQ+S L ++ FD
Sbjct: 61 FIIVQFGLCAFIWNENLNKYIAKPFNFYIFPR-QIHRSTPDVRFLCQSSSLDFLSGHNFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRS 203
F I GISYL E ++ A +H+ +SP + S V+ V
Sbjct: 120 FQKWITQGISYLRPYDEQKLRDNFQERQA-EHSFGPFTSPPVHSPTGSSTKNVYKTPVIV 178
Query: 204 RVKHWK---NACT-------DSDIKTEALVTS---LRKIVLG--GEQFGSRPSMTIDVCS 248
+H + AC+ D D K +L LRK++ +F S + ++
Sbjct: 179 PPEHQEFVSGACSKIEEMVKDPDGKRTSLPPCNGYLRKLIYQTVKHRFRSGIHLEKNMNE 238
Query: 249 ERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK 308
+++ +V ++ D +K + E E E +
Sbjct: 239 KKECFIVATKVD----------------------------DNEKKTFEEEKMAKEDELIE 270
Query: 309 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
GF V+ +IS S K +V HN L D I +F PLP ++++F +++ P+V+D
Sbjct: 271 SAVGFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLLPRVLDT 330
Query: 369 NYL 371
+
Sbjct: 331 KVM 333
>gi|443429421|gb|AGC92706.1| poly(A)-specific ribonuclease PARN-like protein [Heliconius erato]
Length = 586
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 111/443 (25%), Positives = 190/443 (42%), Gaps = 83/443 (18%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T+ NF E+L I I+ +DF+ + + TG + VS FD+P+ Y +
Sbjct: 2 EVTRRNFKEALPLIGESIAKADFLVIDTEFTGLING--RDVSMFDSPQEYYNTLLNGSTD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++Q+ +C F + + YNF LFPR P F CQ+S L ++ +GFD
Sbjct: 60 FLLIQYGLCAFYWNDEEKHYMNDAYNFFLFPRGR---PGPDKIFLCQSSSLDFLSSQGFD 116
Query: 149 FNTCIYDGISYLSEAQESTVK----------VRMGNPMAVDHATKSSSSPALSVADTVFI 198
FN I +GISY+SE ES ++ + +P+ + KS I
Sbjct: 117 FNKLIREGISYMSEPIESRLRENLTERQSRIINDKDPIVIPDEHKSQ------------I 164
Query: 199 ERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 258
E + RV+ + + ++ + +R+++ ++ GSR + + + K+
Sbjct: 165 EDICKRVRTFLDENKTDEMDIDRCNAFIRRLLF--QELGSR--------FKDEAFVETKV 214
Query: 259 LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 318
LE+ S VL + R S + KD KRE + E+ + GF +V
Sbjct: 215 LENKSRVL------------KVTRIKSPSESKSKDDQKREKEW---EEFEEAVGFSKVAR 259
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV 378
+IS S+K ++ HN L D S F PLP + F FP+++D Y + + P
Sbjct: 260 MISQSEKLVIGHNMLLDVLHTLSHFFQPLPEDYASFKEFAHCMFPRLLDTKY-MSSLPPF 318
Query: 379 KKMTNISATIAYLKNRFFAPIEM-EIPN---------QANENEG------------KIHG 416
K + L+ P + EIP+ Q ++E +H
Sbjct: 319 KDKVASTVLPHLLQTLSEPPFALPEIPSLPSRGYTCAQDKQHEAGYDAYVTGLCFLAMHA 378
Query: 417 HNVVKICQLFGKLCSILKITPDA 439
H + ++ G+ C+ ++TPDA
Sbjct: 379 H----VTRMRGERCT--RVTPDA 395
>gi|74141205|dbj|BAE35913.1| unnamed protein product [Mus musculus]
Length = 624
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVVEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL----S 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFDPPKVE 354
>gi|21311877|ref|NP_083037.1| poly(A)-specific ribonuclease PARN [Mus musculus]
gi|12835834|dbj|BAB23382.1| unnamed protein product [Mus musculus]
gi|26337129|dbj|BAC32249.1| unnamed protein product [Mus musculus]
Length = 624
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTL----S 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFDPPKVE 354
>gi|148664948|gb|EDK97364.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_c [Mus musculus]
Length = 672
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G + P S FDTPE Y K K +
Sbjct: 50 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISNGPSVTALTSGFDTPEERYQKLKKHS 109
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 110 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 168
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 169 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 228
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 229 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS---- 259
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 260 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 319
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 320 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 378
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 379 IN-NTSLAELEKRLKETPFDPPKVE 402
>gi|60390578|sp|Q8VDG3.1|PARN_MOUSE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
gi|18256918|gb|AAH21899.1| Parn protein [Mus musculus]
Length = 624
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS---- 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFDPPKVE 354
>gi|345569256|gb|EGX52124.1| hypothetical protein AOL_s00043g514 [Arthrobotrys oligospora ATCC
24927]
Length = 474
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 103/423 (24%), Positives = 178/423 (42%), Gaps = 63/423 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF---- 86
+I + +F+E L + I DFIA+ + +G S P R D L ++
Sbjct: 14 EIDRADFDEELPNLLKLIEDCDFIALDFEFSGVGSDP--RRGQVDMNHKPTLAERYKELC 71
Query: 87 -AAERFQILQFAICPFKLQAS-----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLT 140
+AE ++I+Q ICP K + + K + P+NF + P E ++ ++ S +
Sbjct: 72 ESAEAYRIMQMGICPVKWEPNAPREPKYSSRPFNFFVAPHVEKRLFRYDRAYLFSASAID 131
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIER 200
K GFDFN G YL +E+ +K G D A K P D +E
Sbjct: 132 FHLKNGFDFNKLFSRGCLYLGHQEEAHIK---GLKRQRDEADKKEIEP--KEEDLPMLED 186
Query: 201 VRSRVKHW-KNACTDS----DIKTEALVTSLRKIVLGGEQFGSRPSMTID-VCSERQVQL 254
VRS++ W K +D +I+ +A ++ ++ QF R + + ER +Q
Sbjct: 187 VRSQIIGWIKRRESDPFDFLNIQRDAGYNGYQRRIIS--QFIRREFPDYNGIWYERHLQ- 243
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
++P G + + VL D+ + +LK + RG R
Sbjct: 244 ---------------VVPYNGDRERNI--VLKREDDFQKVLKVQ------------RGVR 274
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
+ID I +KPL+ HN D ++H+ F+ P ++N+F L+ +F ++D +L
Sbjct: 275 HLIDKIMELKKPLIGHNLFTDLVYMHNMFIGDPPEDINDFRRFLQQSFGLIVDTKFLALH 334
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPN----QANENEGKIHGHNVVKICQLFGKLC 430
K TN ++ + L + M P+ N + + G++ + F KL
Sbjct: 335 C----KETNKNSASSSLPELGYRLSHMTYPHIDDFPVNTEQNHVAGYDAWCTARSFVKLS 390
Query: 431 SIL 433
+IL
Sbjct: 391 AIL 393
>gi|449497560|ref|XP_002188970.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Taeniopygia guttata]
Length = 496
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/316 (26%), Positives = 136/316 (43%), Gaps = 55/316 (17%)
Query: 70 RVSTFDTPETAYLKAKFAAERFQILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMP 128
R FD+P Y+KA+ + +RF ++Q + F K ++K + + YNF LFP +G+
Sbjct: 59 REGLFDSPAERYVKARQSVQRFSLVQLGLAIFSKENSNKYVVHSYNFFLFPS---TLGIR 115
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
FT S + ++ GFD+N + DGI Y++E QE ++ H +
Sbjct: 116 DVEFTVSASSIQFLSHYGFDYNKFLKDGIPYMNEVQEEILR---------QHLLADTWKV 166
Query: 189 ALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCS 248
+ D +++ V W A + D ++ L +V G
Sbjct: 167 CSTNVDRDVLKKAIDEVTSWIVAAKEEDT---MILQDLNVVVYGYHMI------------ 211
Query: 249 ERQVQLVLKM---------LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKREL 299
+VQLVL+ LED + V+V + P R +L +S +D K L
Sbjct: 212 --EVQLVLRQALENVWTEPLED-NKVMVKKVSPEH-------RQLLENSSDDHCQKKLIL 261
Query: 300 QTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLR 359
+ RGF + ++ +KPLV HN L D +H KF PLP + EF ++
Sbjct: 262 LS--------ARGFTNLFQILVKVKKPLVGHNMLMDLMHLHDKFYRPLPESYEEFKRNIH 313
Query: 360 LAFPQVIDVNYLLKDI 375
FP +ID + K +
Sbjct: 314 NLFPVIIDTKTVTKSV 329
>gi|242009862|ref|XP_002425701.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
gi|212509602|gb|EEB12963.1| poly A-specific ribonuclease,putative [Pediculus humanus corporis]
Length = 500
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 172/390 (44%), Gaps = 69/390 (17%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF + L +I+ + S FI++ + +G F+ R D+P+ Y+K + A +
Sbjct: 3 EVTSENFWKILPQIEEELKSCSFISIDCEFSGLFT---QRNCLLDSPKERYMKLRSAVQD 59
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
I+Q I FK + + Y+F+L P TCQ L + K FD
Sbjct: 60 ISIIQMGITLFKFDNFNDQFHSSSYSFYLMPTGIFNTNT---KLTCQIESLKFLCKYNFD 116
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN IY GI+Y+SE E+ +K D T S L +D I+ + S++ W
Sbjct: 117 FNKAIYKGINYISEKNENELKKFFNQ----DKITIES----LYFSDC--IKEIHSKIDKW 166
Query: 209 K-NACTDSD--IKTEAL-VTSLRKIVLG--GEQFGS-RPSMTIDVCSERQVQLVLKMLED 261
+ N SD IK L SLR ++L ++F + +P++T D
Sbjct: 167 RLNTKEKSDMIIKISELPCKSLRYLILLEISQRFSNLQPTLTDD---------------- 210
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 321
D +V I K EDK L+++L F+ + GF ++I +
Sbjct: 211 --DAIVIKKIEMKRKEMNI---------EDKFFLQKKL----FQD---IIGFSKIIKEMR 252
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG----- 376
+KP++AHN + D I+ +F+ PLP N +F ++ FP + D +L +++
Sbjct: 253 NVKKPIIAHNCILDIMTIYQQFIKPLPSNYKQFKNDIKKLFPIIYDTKFLTRELNNLINN 312
Query: 377 --PVKKMTNISATIAYLKNRFFAPIEMEIP 404
P K ++++ Y KN P + +P
Sbjct: 313 EIPSKSLSDVY---LYFKNGNVVPKILYMP 339
>gi|225698027|pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
gi|225698028|pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 4 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 63
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 64 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 122
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 123 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 182
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 183 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS---- 213
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 214 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 273
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 274 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 332
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 333 IN-NTSLAELEKRLKETPFDPPKVE 356
>gi|395839184|ref|XP_003792479.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Otolemur garnettii]
Length = 535
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 49/346 (14%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ + +DF+ + ++ TG + + P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLEELVLGADFVGLDIEFTGLRSNLTGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSVFSSMEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H + S D I+ V V W
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HNILCGNWRVRSALDKDQIKVVIDEVTRWLQ 173
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPL 269
+ D T + + +VQLVL+ L + V
Sbjct: 174 LAEEGDWLTLPGIAGFQAF---------------------EVQLVLRQALPNIWTVQREE 212
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ K Q R L ++ D+ RE RGF ++ +QKPLV
Sbjct: 213 GVVVKKVSKQH-RWYLENTSCDRASCWREKILLS------ARGFSVFFQMLVKAQKPLVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
HN + D +H KF PLP + ++F ++ FP +ID + KDI
Sbjct: 266 HNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVIIDTKNVTKDI 311
>gi|298707724|emb|CBJ26041.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 705
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 159/372 (42%), Gaps = 43/372 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
ITK NF +S I I SS FIA+ + TG R D+ + Y A+ + +F
Sbjct: 3 ITKENFEQSFDVICEAIRSSHFIALDTEFTGLRLPGAAREKMMDSVQARYDLARGSCSQF 62
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q+ IC F+ ++ A P+N + P ++CQ S + ++K GFDF
Sbjct: 63 MLTQYGICCFRYHDERLEARPFNCFVVPS---TYHGSDRVYSCQASSMDFLSKHGFDFQA 119
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS-------------------------S 186
G+ +LS A+E V+ ++ + +
Sbjct: 120 WASHGVPFLSRAEEEVVEGKLRRRWEREATVAAERKEAVAAKAEAEAAAGEGDGGAAAVE 179
Query: 187 SPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDV 246
P + D IE ++ + K D+ K EAL L + GGE + S+ ++
Sbjct: 180 GPVHTARDGTTIESLQ---EPEKGMVKDALKKVEAL---LAESSSGGEYV--QKSVKLEP 231
Query: 247 CSERQVQLVLKML-EDFSDV-LVPLIIPAKGGGTQAVRAVLTSSDE----DKDLLKRELQ 300
+ RQ L+ + + +DV L L PA + +R V E ++ L+ + Q
Sbjct: 232 MNGRQRWLMYEFVGSSTADVKLSNLPGPAYARPME-IRTVCKDDPEKHAEEEAKLRADEQ 290
Query: 301 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
+ +R GFR V+D IS + KP++ HN L D H KF+ P+P +M++ +L
Sbjct: 291 ARQLGDLRRAVGFRRVVDEISKAGKPVICHNGLLDLLHTHDKFVGPIPVDMDDGTRALHS 350
Query: 361 AFPQVIDVNYLL 372
P++ D ++
Sbjct: 351 LLPRLFDSKVVM 362
>gi|297723221|ref|NP_001173974.1| Os04g0467400 [Oryza sativa Japonica Group]
gi|255675538|dbj|BAH92702.1| Os04g0467400 [Oryza sativa Japonica Group]
Length = 207
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+KQ+T+ N E+L E++ + + F+ + L+ +G S+PW D + YLK + +A
Sbjct: 46 VKQVTRGNLAEALEELRARVRGAAFVGIDLEMSGVTSAPWRDTLGLDRADVRYLKLRDSA 105
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
ERF LQ +CPF+ +K +A+P+NF +F R+E ++ F CQT+ + +AK
Sbjct: 106 ERFAALQLGVCPFRWDPAKSAFVAHPHNFFIFSRNEPLNDCSTHEFLCQTTSIDFLAKYQ 165
Query: 147 FDFNTCIYD 155
FDFNTC +
Sbjct: 166 FDFNTCFRE 174
>gi|322801460|gb|EFZ22121.1| hypothetical protein SINV_07959 [Solenopsis invicta]
Length = 571
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 91/342 (26%), Positives = 144/342 (42%), Gaps = 37/342 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+++ + ++ F+++ + TG S P FDTP Y K + +
Sbjct: 2 EVTNSNFQEVLCELESVLKNATFLSIDGEFTGLNSGP--EAGPFDTPAQYYGKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + +K YNF++FP+ + P F CQ S + +A + FD
Sbjct: 60 FLLVQFGLSVFTYDSETNKYSQRSYNFYVFPK-PMNRQAPDSRFMCQASSIVFLANQDFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL + E + RM + P +S D IE + SR++++
Sbjct: 119 FNKLFKHGIPYLCASDEEKLVKRMEEKQKLKEENNQDIIP-ISDNDRPQIEEICSRIENF 177
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF--SDVL 266
SD K +TID C+ +LV + V
Sbjct: 178 ----LASDAK----------------------ELTIDRCNGFMRRLVYQEARARWPDKVR 211
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
+ I RA +E KD KRE + E +Q G ++ I S+K
Sbjct: 212 IETKIENTWQCLLVQRAGTKEEEEGKDNEKREKEKLEVKQ---AVGLSSLLKKIVESEKI 268
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
+V HN L D I +F PLP + EF + FP ++D
Sbjct: 269 IVGHNMLLDLCHIIHQFFTPLPSDYLEFKSLIHGLFPNLLDT 310
>gi|393716306|ref|NP_001257344.1| poly(A)-specific ribonuclease PARN [Rattus norvegicus]
gi|306415570|gb|ADM86746.1| poly(A)-specific ribonuclease [Rattus norvegicus]
Length = 624
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/385 (25%), Positives = 175/385 (45%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHANSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALTKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ G Q + ++ ++ C+ Q +L+ + L
Sbjct: 181 IE-------------------------GFLQREEKRTLELNPCTGFQRKLIYQTL----S 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLVVGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFDPPKVE 354
>gi|431910469|gb|ELK13541.1| Poly(A)-specific ribonuclease PARN [Pteropus alecto]
Length = 635
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 158/349 (45%), Gaps = 46/349 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 77 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTTLTNGFDTPEERYQKLKKHS 136
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 137 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 195
Query: 147 FDFNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E + +++ A+ + + ++S +++ + F
Sbjct: 196 FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF 255
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ +L E+ ++ +D C+ Q +L+ +
Sbjct: 256 IDQVVEKIED----------------------LLKSEE---NKNLDLDPCTGFQRKLIYQ 290
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFR 314
L P I + T+ R ++ S ++++ +RE Q EQ + GF
Sbjct: 291 TLS----WKYPKGIHVETLETEKKERYIVVSKVDEEERKRREQQKHAKEQEELNDAVGFS 346
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
VI I+ S K ++ HN L D +F PLP N + ++ L+ P
Sbjct: 347 RVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPAKSNTAVNTVALSLP 395
>gi|119605517|gb|EAW85111.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Homo sapiens]
Length = 640
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 91/392 (23%), Positives = 172/392 (43%), Gaps = 51/392 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFA- 87
+I ++NF +L ++ I +DF A+ + +G P T FDTPE + F
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQH 61
Query: 88 AERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +
Sbjct: 62 SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQ 120
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TV 196
GFDFN +GI YL++ +E ++ + A+ + + ++S +++ +
Sbjct: 121 GFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKK 180
Query: 197 FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
FI++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 FIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE--- 237
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFR 314
R ++ S ++++ +RE Q EQ + GF
Sbjct: 238 -------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFS 272
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 RVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAS 331
Query: 375 IGPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 TQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 362
>gi|297478860|ref|XP_002690421.1| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
gi|296483863|tpg|DAA25978.1| TPA: poly(A)-specific ribonuclease (PARN)-like domain containing
1-like [Bos taurus]
Length = 524
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 46/317 (14%)
Query: 63 SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFP 119
+ S P ++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 30 NLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFP 88
Query: 120 RDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD 179
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K
Sbjct: 89 T---TFGVLDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK---------- 135
Query: 180 HATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSR 239
H + + S D I+ V V W + + D T + +
Sbjct: 136 HNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGIAGFQAF---------- 185
Query: 240 PSMTIDVCSERQVQLVL-KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE 298
+VQLVL K L D VL + K TQ + T+S + + K +
Sbjct: 186 -----------EVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKEK 234
Query: 299 LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSL 358
+ RGF ++ ++KPLV HN + D +H KF PLP + +EF ++
Sbjct: 235 ILL-------SARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNI 287
Query: 359 RLAFPQVIDVNYLLKDI 375
FP +ID + KDI
Sbjct: 288 HNLFPVLIDTKNVTKDI 304
>gi|332245325|ref|XP_003271811.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Nomascus
leucogenys]
Length = 520
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 141/328 (42%), Gaps = 49/328 (14%)
Query: 55 AVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKV 108
+ ++ TG + S P ++S FD P YLK + + ++F I Q + F +A+K
Sbjct: 15 GLDMEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAVEGEANKY 73
Query: 109 IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTV 168
IA+ NF+LFP G+ F+ Q S + + + GF++N + +GI Y++E QE +
Sbjct: 74 IAHSCNFYLFPT---TFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKI 130
Query: 169 KVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRK 228
+ H + + S D I+ V V W + + D T +T +
Sbjct: 131 R----------HDILTGNWRVRSTPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGITGFQA 180
Query: 229 IVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTS 287
+VQLVL+ L + VL + K Q R + +
Sbjct: 181 F---------------------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQHRRYLQNT 219
Query: 288 SDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPL 347
S + + K + RGF ++ +QKPLV HN + D +H KF PL
Sbjct: 220 SCDRESCWKENILL-------SARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPL 272
Query: 348 PPNMNEFICSLRLAFPQVIDVNYLLKDI 375
P + ++F ++ FP +ID + KDI
Sbjct: 273 PESYDQFKQNIHRLFPVLIDTKSVTKDI 300
>gi|328709367|ref|XP_001946252.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 631
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 192/447 (42%), Gaps = 48/447 (10%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ NF + L EI+ I+ DFIA+ + TG + VS FDT Y K + F
Sbjct: 3 VVNENFYQLLPEIEQAIAECDFIAIDGEFTGLHNGTM--VSIFDTAAQYYQKLRSNCMDF 60
Query: 92 QILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
++QF +C K + K YNF+ FP+ + P F CQ+S + ++ FDF
Sbjct: 61 LMVQFGLCAVKYNTEKKKFTYRAYNFYTFPK-PMSRYAPDCRFLCQSSSMEFLSNHNFDF 119
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPM---AVDHATKSSSSPALSVADT--VFIERVRSR 204
N GI +L+ E ++ + N + T S S + + D IE +
Sbjct: 120 NKLFKHGIPFLTVPDEQVLQNELLNRYKQNCLQAQTPSKVSDCIPIPDNHKADIETACEK 179
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
VK + T S++ S + ++ E + P + +V L +++ED +
Sbjct: 180 VKELLESETISEVIIAEKTNSFVRKLIYQEVYKRYP--------DTKVSLQSRIVEDIGN 231
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
V+V A G T+ + A + ++RE + E K V GF V+ I AS
Sbjct: 232 VMV-----AFKGRTKLLMA--------HERMERE----QIELEKAV-GFSAVLKKIIASN 273
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL-----LKDIGPVK 379
KP+V HN D + +F PLP + +EF ++ + +D Y+ LK
Sbjct: 274 KPIVGHNMTLDVCHMIHQFCLPLPSSYSEFQAMVKTISYRFLDTKYISGTEPLKGFFGST 333
Query: 380 KMTNISATIAYLKNRFFAPIEMEIPNQANENE-GKIH--GHNVVKICQLFGKLCSI---L 433
+ ++ ++A + + + +E E+P E K+H G++ +F LC++ +
Sbjct: 334 VLNDLKKSLAE-QCQNYTDLEPEVPEVGYSEEISKLHDAGYDAYLTSTVFVNLCNLYAKV 392
Query: 434 KITPDAIESSDDFLASAINRYANIFYS 460
K + I + +L N+ I Y+
Sbjct: 393 KGIKEHISTDSSYLKQYENKLFMIRYN 419
>gi|156384950|ref|XP_001633395.1| predicted protein [Nematostella vectensis]
gi|156220464|gb|EDO41332.1| predicted protein [Nematostella vectensis]
Length = 449
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 135/344 (39%), Gaps = 38/344 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF EI I S F+A+ + TG +++ + FD E Y K K +
Sbjct: 3 EVTRSNFEAHFEEISGAIEKSVFVAIDTEFTGLYANDTCKPCLFDNAEAIYKKQKKTVSQ 62
Query: 91 FQILQFAIC---PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
I QF + P + A+ +N +LFP G F CQ S L + + F
Sbjct: 63 VLISQFGLSMFEPVPDHPGRYKAHVFNCYLFP---CSFGAADCRFLCQASSLEFLCQHDF 119
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN +Y G+ +L+E QES V+ + HA S L D I ++V
Sbjct: 120 DFNKFVYQGVPFLNEEQESMVRSQHNQKTL--HA--GMQSLQLRDIDDQIISCSCNKVDE 175
Query: 208 WKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 267
W D T T++ + +L E Q Q + L L
Sbjct: 176 WLKTANIGDNMTLNAHTAVGQYLL---------------LLELQKQSTMNQLRYEVQDLY 220
Query: 268 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
++I + ++ + E++ LL V GF + L+ +KPL
Sbjct: 221 QIVITRQTNCSEEAMKKHLAEQEERILLS-------------VIGFSRIFKLLVKHKKPL 267
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ HN D I+ K PLP ++F + FP V D ++
Sbjct: 268 IGHNMFTDLMLIYDKLYKPLPDCYDDFKADIHRLFPYVYDTKHI 311
>gi|344295143|ref|XP_003419273.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Loxodonta africana]
Length = 531
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 145/332 (43%), Gaps = 49/332 (14%)
Query: 51 SDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQ 104
+DF+ + ++ TG + S P ++S FD P YLK++ + ++F I Q + F K +
Sbjct: 22 ADFVGLDIEFTGLRSTLSRP-QQISLFDLPSEWYLKSRQSVQQFTICQIGLSVFSRVKGE 80
Query: 105 ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQ 164
++K +++ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E Q
Sbjct: 81 SNKYVSHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQ 137
Query: 165 ESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVT 224
E +K H+ + S D I+ V RV W + D T +T
Sbjct: 138 ERKIK----------HSILCGNWRVRSSLDKDQIKMVIDRVTRWLALAEEGDWMTLPGIT 187
Query: 225 SLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRA 283
+ +VQLVL+ L + V + K Q
Sbjct: 188 GFQAF---------------------EVQLVLQQALPNIWTVPKDQGVTVKKVSKQHRWY 226
Query: 284 VLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 343
+ +S E + K ++ + +G + ++ +QKPLV HN L D +H KF
Sbjct: 227 LENTSCERERCWKEKILLY-------AKGLSVLFQMLVKAQKPLVGHNMLMDLLHLHEKF 279
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
LP + ++F ++ FP +ID + KDI
Sbjct: 280 FRHLPESYDQFKLNIHHLFPILIDTKNVTKDI 311
>gi|345485560|ref|XP_001607788.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Nasonia
vitripennis]
Length = 779
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 116/468 (24%), Positives = 203/468 (43%), Gaps = 63/468 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF + L E+ + + F+A+ + TG S P + FDTP Y K + +
Sbjct: 2 EVTRSNFQDVLKELDEVLDKATFLAIDGEFTGLNSGP--DANAFDTPAQYYTKLRKGSMN 59
Query: 91 FQILQFAICPFKLQASKVIAYP---YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
F ++QF + F SK Y YNF++FPR L P F CQ S + +A EGF
Sbjct: 60 FLLVQFGLAVFTYN-SKTNLYSQRSYNFYVFPR-PLDRTSPDCRFMCQASSIVFLANEGF 117
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN +GI YL++ E + +M + V + +S D I+ + S ++
Sbjct: 118 DFNKLFKEGIPYLTKEDEEKLNKKMVDKQKVRE--EGLDLIPISDDDKPQIDEICSGIED 175
Query: 208 WKNACTDS-DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ N+ D +++ E +R++V + + ++ +E Q
Sbjct: 176 YVNSEDDGKELRIERCNAFIRRLVHQEARLRWPNKIRLETRNENGNQ------------- 222
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
II +K G + T K+ +K E+Q G ++ I+ S K
Sbjct: 223 --FIIVSKIGTKEEEEQKETER---KERVKLEVQ--------EAVGLSVLLRKIADSGKV 269
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL-----LKDIGPVKKM 381
+V HN L D I +F APLP + +EF + FP+++D + KD P
Sbjct: 270 IVGHNMLLDLCHIIHQFFAPLPESYHEFKSLVHCLFPRLLDTKIICQSGQFKDSVP---- 325
Query: 382 TNISATIAYLKNRFFAPIEME-IPNQANE-NEGKIH---------GHNVVKICQLFGKL- 429
+N++ + L + F+ E E IP+++ + N K H G + +C G+L
Sbjct: 326 SNLNQLLETLHSAPFSIPETENIPDRSYKLNNDKSHEAGYDAYITGLCFIALCNRLGELQ 385
Query: 430 ----CSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEI 473
++L +P + L + + Y +I +L G+ P+ E +
Sbjct: 386 IPEISTVLPDSPLLNPYLNKLLIARLKDYPHI--NLIGNDPNPSREHV 431
>gi|443696772|gb|ELT97394.1| hypothetical protein CAPTEDRAFT_177560 [Capitella teleta]
Length = 612
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 61/362 (16%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGS-------------FSSPWHRVSTFDTPETAYL 82
+F ESL I I + F+++ + TG F S W DTPE Y
Sbjct: 12 DFKESLPLISQAIQDASFVSIDCEMTGDSLLTSFLCLIQSGFESHW-----MDTPEDRYN 66
Query: 83 KAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLT 140
K + A F ++QF +C F K + + + +NF++FPR + FTCQ+S +
Sbjct: 67 KLRQGAMPFNVIQFGLCTFNKKEDSKQYSVHAFNFYIFPR-PVNSDATDVRFTCQSSSID 125
Query: 141 AMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV-- 196
+ FDFN C +GISY++ E T K+ + A + SP+ S+ + +
Sbjct: 126 FLINHNFDFNKCFKEGISYMNCDEELHVTKKLEQRHAEAAARDAQRLLSPSRSLHNDLKP 185
Query: 197 ----FIERVRSRVKHWKNACTDSDIKTEALVTSLRKI---VLGGEQFGSRPSMTIDVCSE 249
+++ +R ++ ++ + +S + + LRK+ +L G ++ ++ + +
Sbjct: 186 GQKQYMQDLRIKITNFVKSSNES-LSLDPANAFLRKLTYNLLHG-KYPNQIHVQTKTNEK 243
Query: 250 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
Q L+L+ + +DV E+ + ++R Q E +
Sbjct: 244 HQQYLLLQKISSKTDV------------------------ENIEKMRRNSQLGEVQD--- 276
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
GF +VI L+ S+K ++ HN L D + KF A LP + EF FPQ+ID
Sbjct: 277 AVGFAKVIQLLRESEKLIIGHNMLLDLLHMVDKFCAVLPQSYEEFKLLASSVFPQIIDTK 336
Query: 370 YL 371
+
Sbjct: 337 VM 338
>gi|390345831|ref|XP_003726420.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 536
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/346 (26%), Positives = 144/346 (41%), Gaps = 49/346 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I +++ + I I S FIA+ + TG ++ S FDTP Y K + A +
Sbjct: 2 EINRSSHSSESKNILQSIQDSSFIAIDTEFTGLHATQSDINSLFDTPAQRYEKLRRMAMQ 61
Query: 91 FQILQFAICPF-KLQASKVI-AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ I Q + F K+ + A+ YNFHLFPR + FTCQ S + + K F+
Sbjct: 62 YTICQLGVSAFVKVPNTNTYEAHTYNFHLFPR---SISSLDARFTCQASSIEFLCKHNFN 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN Y+G+SYL+ +E ++ S A T ++ R
Sbjct: 119 FNKLFYEGVSYLTRDEEEELR---------------------SQAQTKPVQLAR------ 151
Query: 209 KNACTDSDIKTEALVTS---LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
D D++ EA+ T L + G E +T+ E L+ +++D
Sbjct: 152 ---YMDEDLQKEAISTISEWLSEAHAGDE-------LTVGQYEELDGLLLQLVIQDS--- 198
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQK 325
PL+ T V + E+K+ L+ + ++ GF V + S+K
Sbjct: 199 -FPLLNTCFDATTTRQMKVRVMATENKEGLEEDQVKLGHRVVDKLLGFTAVFRALVESKK 257
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
P++ HN L D KF PLP + + F L FP++ D YL
Sbjct: 258 PIIGHNLLTDLMLFFQKFHNPLPRSYSTFKVQLNELFPKIYDTKYL 303
>gi|114610059|ref|XP_518838.2| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 isoform 4 [Pan troglodytes]
gi|397471748|ref|XP_003807444.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 isoform 1 [Pan paniscus]
gi|410307434|gb|JAA32317.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Pan
troglodytes]
Length = 520
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 137/313 (43%), Gaps = 49/313 (15%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F +A+K IA+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK--VRMGNPMAVDHATK 183
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ + GN +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIRHDILTGN-------WR 140
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMT 243
SSP D I+ V +V W + D T +T +
Sbjct: 141 VRSSP-----DKDQIKVVIDQVTRWLELAKEGDWMTLPGITGFQAF-------------- 181
Query: 244 IDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF 302
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 -------EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILL 233
Query: 303 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 362
RGF ++ +QKPLV HN + D +H KF PLP + N+F ++ F
Sbjct: 234 S------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYNQFKQNIHSLF 287
Query: 363 PQVIDVNYLLKDI 375
P +ID + KDI
Sbjct: 288 PVLIDTKSVTKDI 300
>gi|301779938|ref|XP_002925390.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 526
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 132/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + + +K +A+ NF LFP
Sbjct: 37 QQISLFDLPSEWYLKTRRSVQQFTICQIGLSVFSSIEGETNKYVAHSCNFFLFPT---TF 93
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ FT Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 94 GILDSEFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 143
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W ++ + D T + +
Sbjct: 144 NWRVRSSLDKDQIKVVIDEVTRWLDSAEEGDWMTLPGIAGFQAF---------------- 187
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L D VL I K Q R L ++ D+ +E
Sbjct: 188 -----EVQLVLRQALPDIWTVLRDQGIIVKKVNKQH-RWYLENTSCDRASCWKEKILLS- 240
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 241 -----ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKLNIHNLFPV 295
Query: 365 VIDVNYLLKDI 375
+ID + +DI
Sbjct: 296 LIDTKNVTRDI 306
>gi|340723245|ref|XP_003400002.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Bombus
terrestris]
Length = 561
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 154/352 (43%), Gaps = 57/352 (16%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ +NF+ I+N I+++ FIA+ + +G + + S FDT Y K
Sbjct: 1 MNEVLNSNFDAVYPRIENAINNAAFIAIDAEMSGIHTERDLKNSLFDTLNDRYTAWKRNI 60
Query: 89 ERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++F I+QF I F SK A + F+LFPR + + + + + + + K G
Sbjct: 61 QQFVIVQFGITTFYRVPSKNAYKADSFTFYLFPR---SIPLKNRQLSWEVEAMDFLYKHG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA---DTVFIERVRS 203
FDFN + GISY+ E E + +DH T+ LS+ + + +S
Sbjct: 118 FDFNKFLVGGISYIDEIDEK---------LMLDHITQGDIEDCLSLLSYDEEENFKECKS 168
Query: 204 RVKHW-KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+V W N ++ +K E +T + + VL + + ++
Sbjct: 169 KVCEWISNKSENAPLKLET-ITPMVQYVLHKD-----------------------LRNNY 204
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKR---ELQTFEFEQNKRVRGFREVIDL 319
+D+ +++ + S + DL K+ E +F GF +V L
Sbjct: 205 NDIWTT-------SDCKSIDVMKISGNAQDDLSKKNNLEDVLLDF-----YLGFSKVFKL 252
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+S+S+K ++ HN L D F+H +F PLP + EF ++ FPQ+ D +L
Sbjct: 253 LSSSKKMIIGHNILLDLMFMHQQFYKPLPDSYKEFKSNIHTLFPQIYDTKFL 304
>gi|358413893|ref|XP_872807.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Bos taurus]
Length = 502
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 133/306 (43%), Gaps = 45/306 (14%)
Query: 74 FDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSY 130
FD P YLK + + ++F I Q + F + +++K +A+ NF LFP G+
Sbjct: 18 FDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGVLDS 74
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
F+ Q S + + + GFD+N + +GI Y++E QE +K H + +
Sbjct: 75 EFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTGNWKVR 124
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
S D I+ V V W + + D T + G + F
Sbjct: 125 SSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGIA-------GFQAF-------------- 163
Query: 251 QVQLVL-KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
+VQLVL K L D VL + K TQ + T+S + + K ++
Sbjct: 164 EVQLVLRKALPDIWTVLRDQGVIVKKVSTQHRWYLETTSCDRESCWKEKILL-------S 216
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
RGF ++ ++KPLV HN + D +H KF PLP + +EF ++ FP +ID
Sbjct: 217 ARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPVLIDTK 276
Query: 370 YLLKDI 375
+ KDI
Sbjct: 277 NVTKDI 282
>gi|194227480|ref|XP_001491677.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Equus caballus]
Length = 627
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 132/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 138 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFP---TTF 194
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 195 GILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 244
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W + + D T + +
Sbjct: 245 NWSVHSSPDKDQIKVVIDEVTRWLDLAAEGDWMTLPGIAGFQAF---------------- 288
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L D VL + K Q R L ++ D++ +E
Sbjct: 289 -----EVQLVLRQALPDIWTVLRDQGVVVKKVSKQH-RWYLENTSGDRESCWKEKILLS- 341
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + +F ++ FP
Sbjct: 342 -----ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEQFKLNVHNLFPV 396
Query: 365 VIDVNYLLKDI 375
+ID + KDI
Sbjct: 397 LIDTKNVTKDI 407
>gi|145495491|ref|XP_001433738.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400858|emb|CAK66341.1| unnamed protein product [Paramecium tetraurelia]
Length = 526
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 156/364 (42%), Gaps = 75/364 (20%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T+ N+ +L+ I+ I +++IA+ + TG +S R S D+ + Y K K RF
Sbjct: 3 LTRYNYLHNLAFIQQRIKEANYIALDFEFTGVLASSLLRNSLLDSFQMRYWKVKENVRRF 62
Query: 92 QILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSY---SFTCQTSYLTAMAKEG 146
+Q +C F+ A + VIA+P+NF++FP G+ Y F ++ ++ +
Sbjct: 63 LPIQMGLCTFREDANSNNVIAHPFNFYIFP-----YGVDGYLDKQFQLSSNSISFLTNNN 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN +GI YLS E ++ DT I+ +R+ ++
Sbjct: 118 FDFNRTFNEGILYLSHQDEKILR------------------------DTKRIQDLRNEIR 153
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ I T ++ +++ + EQF + V ++ Q ++ +K L+
Sbjct: 154 YL------DKIVTFEMINFVKQYKVQVEQF-------LKVSNDPQFEIPIKRLK------ 194
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDE-----DKD-LLKREL------------QTFEFEQNK 308
+ +++ S E D D L+KRE+ + E+
Sbjct: 195 ----VKVYRHFIESITKEFGKSYEFYCKYDSDILIKREILYIVKGPEPPETKKQNVEEAN 250
Query: 309 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
G R ++D IS + P++ HN L D I+ KF LP + EFI + FP + D
Sbjct: 251 EFAGVRILLDQISQQKTPIILHNGLMDIMHIYDKFFETLPDSRGEFISKVNSLFPVIYDT 310
Query: 369 NYLL 372
+L+
Sbjct: 311 KFLI 314
>gi|383864733|ref|XP_003707832.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Megachile
rotundata]
Length = 577
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 153/339 (45%), Gaps = 34/339 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + + ++ FI + + TG S P FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLIELDDVLKNASFIGIDGEFTGLHSGP--DPGAFDTPAQYYAKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F +A+K YNF++FPR L P F CQTS L+ +A +GFD
Sbjct: 60 FLLVQFGLSVFTFDKEANKYNQRSYNFYVFPR-PLNCAAPDCRFMCQTSCLSFLANQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL+ +E + R+ + T ++ D IE + SR++ +
Sbjct: 119 FNKLFKLGIPYLTMTEEEKLTKRLEKRQKLKEETPELV--PITDDDKPQIEDICSRIQEF 176
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ T+ ++ E +R++V + I ++ +V+ LE+F
Sbjct: 177 TESETE-ELTIEKCNAYMRRLV--------HQEVRIRWPNKLKVE---NRLENFG---CT 221
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
L++ G + + +++K +++ + G ++ I+ S K +V
Sbjct: 222 LVVQRLGTKEEEEEKEIKRKEKEKLEIQQAV------------GLSMLMRKIADSGKLIV 269
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
HN L D I +F LP N EF + FP+V+D
Sbjct: 270 GHNMLLDLCHIVHQFFGQLPENYLEFKALVHSLFPKVLD 308
>gi|449277827|gb|EMC85849.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein
1, partial [Columba livia]
Length = 485
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 137/331 (41%), Gaps = 73/331 (22%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P YLKA+ + +RF + Q + F + S K + + YNF+LFP +G+
Sbjct: 1 SLFDSPMERYLKARQSVQRFTVTQLGLAIFSNENSNKYVVHSYNFYLFPA---TLGVMDV 57
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
FT S + ++ GFD+N + DGI Y++E QE + + S
Sbjct: 58 EFTLSASSIQFLSHYGFDYNKFLKDGIPYMNEEQEKIFSQHL----------LAGSWKVS 107
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
S D +++ V W A + D T + + G + F
Sbjct: 108 SDLDRDVLKKAIDEVTCWIAAAEEDD-------TMVLHDLSGYQMF-------------- 146
Query: 251 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL--KRELQTFEFEQNK 308
+VQLVL+ QA++ V T DK ++ K Q + +N
Sbjct: 147 EVQLVLR---------------------QALQNVWTQPLGDKKVIVKKVSFQHRQLLENS 185
Query: 309 ------------RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFIC 356
RGF + + ++KPLV HN L D +H KF PLP + EF
Sbjct: 186 PHDCCQKELILLSARGFTNLFQTLVKAKKPLVGHNMLMDLMHLHDKFYKPLPESYEEFKR 245
Query: 357 SLRLAFPQVIDVNYLLKDIG---PVKKMTNI 384
++ + FP +ID + K I P +++N+
Sbjct: 246 NIHILFPVLIDTKTITKSIWKKYPFPRVSNL 276
>gi|27735155|ref|NP_775787.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Homo sapiens]
gi|160419239|sp|Q8NA58.2|PNDC1_HUMAN RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|21757367|dbj|BAC05101.1| unnamed protein product [Homo sapiens]
gi|85567674|gb|AAI12247.1| Poly(A)-specific ribonuclease (PARN)-like domain containing 1 [Homo
sapiens]
gi|119567998|gb|EAW47613.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1,
isoform CRA_b [Homo sapiens]
gi|313883454|gb|ADR83213.1| poly(A)-specific ribonuclease (PARN)-like domain containing 1
(PNLDC1) [synthetic construct]
Length = 520
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F + Q + F +A+K IA+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ H +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR----------HDILTG 137
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W + D T +T +
Sbjct: 138 NWRVRSSPDKDQIKVVIDEVTRWLELAKEGDWMTLPGITGFQAF---------------- 181
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 -----EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS- 234
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 235 -----ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV 289
Query: 365 VIDVNYLLKDI 375
+ID + KDI
Sbjct: 290 LIDTKSVTKDI 300
>gi|307192585|gb|EFN75773.1| Poly(A)-specific ribonuclease PARN [Harpegnathos saltator]
Length = 600
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 36/360 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF + LSE+ NH+ + FI + + TG S+P FDT Y K + +
Sbjct: 2 EITIQNFRDVLSELDNHLQHATFICIDAEFTGLNSAP--DTGPFDTLAQYYTKLRTGSMS 59
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K Y F++FP+ +L P F CQ S + +A + FD
Sbjct: 60 FLLVQFGLSLFTYNSDTKKYSQRSYTFYVFPK-QLNYRAPDCRFMCQASSIAFLASQNFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL+ +E + RM + P +S D IE + S+++ +
Sbjct: 119 FNKLFKHGIPYLNINEEEKLIKRMEERQRQKEEYNDAVIP-ISDTDKPQIEEICSKIEDF 177
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
A ++ E +R+++ ++ +R + + E +++ + L
Sbjct: 178 L-ASDKEELTIERCNKFMRRLIY--QEAKNRWPDKVRI--ESKIENTWQCL--------- 223
Query: 269 LIIPAKGGGTQAVRAVLTSSDED-KDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
+V+ V T E+ K+ +RE + EF+Q G ++ + S K +
Sbjct: 224 -----------SVQKVGTKEQEEAKENQRREKEKLEFDQ---AVGVSNLLKKVLNSGKTI 269
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISAT 387
V HN L D I +F+ PLP + +EF + FP ++D + + P K+ + S+T
Sbjct: 270 VGHNMLLDLCHIIRQFVTPLPADYSEFKNLVHDLFPSLLDTKVICQS-QPFKEHISPSST 328
>gi|197102228|ref|NP_001126488.1| poly(A)-specific ribonuclease PARN-like domain-containing protein 1
precursor [Pongo abelii]
gi|75070545|sp|Q5R6R6.1|PNDC1_PONAB RecName: Full=Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1; Flags: Precursor
gi|55731677|emb|CAH92544.1| hypothetical protein [Pongo abelii]
Length = 520
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F +A+K A+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYTAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ H +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR----------HDILTG 137
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W + + D T +T +
Sbjct: 138 NWRVRSSPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGITGFQAF---------------- 181
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 -----EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS- 234
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 235 -----ARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV 289
Query: 365 VIDVNYLLKDI 375
+ID + KDI
Sbjct: 290 LIDTKSVTKDI 300
>gi|326915669|ref|XP_003204136.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Meleagris gallopavo]
Length = 514
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 137/317 (43%), Gaps = 66/317 (20%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P Y K + + +RF I Q + F + S K + + YNF LFP +G+
Sbjct: 17 SLFDSPAERYQKVRRSVQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPS---TLGVMDA 73
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
T S + ++ GFD+N + DGI Y++E QE + R+ ++ + K S+ +
Sbjct: 74 ELTLSASSIQFLSHYGFDYNKFLKDGIPYMNELQEKILSQRL-----LEGSWKVYSALNM 128
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
+V +++ V W A + D +M + S+
Sbjct: 129 NV-----VKKAIDEVTCWIAAAKEGD------------------------AMILQELSDS 159
Query: 251 Q---VQLVLKM---------LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRE 298
Q VQLVL+ L D ++VLV + P R +L SS D ++E
Sbjct: 160 QMLDVQLVLRQALPNVWTQPLRD-NEVLVKKVSPQH-------RRLLESSSHDS--CRKE 209
Query: 299 LQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSL 358
L RGF + +I ++KPLV HN L D +H KF PLP + EF ++
Sbjct: 210 LIL------TSARGFTNLFQIIVKAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNI 263
Query: 359 RLAFPQVIDVNYLLKDI 375
FP +ID + K I
Sbjct: 264 HHLFPVLIDTKTVTKSI 280
>gi|215697086|dbj|BAG91080.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 502
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 190/411 (46%), Gaps = 58/411 (14%)
Query: 236 FGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK--- 292
F RP++ ++ + Q++L+ ++L LV + + G ++ R V T ++EDK
Sbjct: 37 FKMRPAIMLNGFTSHQLKLIRQILRTHFRDLVYVCTFLEDGVSEK-RVVYTDTNEDKISL 95
Query: 293 ------DLLK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLA 345
DLLK RE + K G R VIDL+++ +K +V H+ D I+SKF+
Sbjct: 96 MKNVREDLLKSREAKV------KSAVGIRHVIDLLASERKLIVGHSCFLDIAQIYSKFVG 149
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK-----KMTNISATIAYLKNRFFAPIE 400
PLP +M EF S+ FP + D +L+ V+ K ++S+ + L AP E
Sbjct: 150 PLPSSMEEFALSINRMFPHMADTRHLMSVNDAVQYRMRHKSKSLSSAFSLLCPALHAPDE 209
Query: 401 -------MEIPNQANE------NEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDD 445
+ I +A+E G H G++ +F +LC+ I + + +D
Sbjct: 210 KSSTLPSVRIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCAYHGIKFEQLSPLED 269
Query: 446 FLASAINRYANIFYSLP----GSSQEPTNEEIRGWTNDKRKVSC---EDVVFLWGFRERI 498
LA+ IN +I P G+ + + R KR+ ++V+ +WGF+ ++
Sbjct: 270 -LATNINLKKHINLLPPCWNSGTVLDLSTGTERPDAGYKRRYPAAVYDNVILIWGFQSKV 328
Query: 499 SAGILKNMLQGSHEVFAEA--FNVRMVDRSCAIVVFGKP-------GLSNTFKNVMNSKA 549
+K+ + +VF A +V +D + +V F K L T ++ ++ +
Sbjct: 329 RPKDIKDCIC---KVFGRASVTSVFPIDSTAVLVQFSKQESVNDFLDLKATLESADSAIS 385
Query: 550 VSGPLREMVSDG-LKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSE 599
V PL ++ G +AA Y+TY+ +C S + + + AD + ++ N S+
Sbjct: 386 VLHPLSTILEGGKTRAAKYDTYRDICRSSVSKFSFADQAEAVCSTSNSESK 436
>gi|357621648|gb|EHJ73417.1| hypothetical protein KGM_05205 [Danaus plexippus]
Length = 394
Score = 95.9 bits (237), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/353 (24%), Positives = 149/353 (42%), Gaps = 42/353 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT NFN+ I + S FI + T S + FDT + Y + K +
Sbjct: 3 ITNKNFNQEFDSIIKCLKKSCFIGFDAEFTAILSGECFKYRLFDTNKERYDRMKDEVCKM 62
Query: 92 QILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+ Q + F+ + I++ Y FHL P+ G + SFT Q S + + FD+
Sbjct: 63 IMNQVGLTMFQYDRDNDRYISHTYTFHLCPQ---VFGDINQSFTFQASAIRFLCLHNFDY 119
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
N YDG+ Y+S ++E+ +K ++ +++ + A+ + D ++ S V W
Sbjct: 120 NKFTYDGLPYMSRSEEAHIKKQLKEKTLLNNLIQ-----AMEMNDERKLQSYCSEVAKWL 174
Query: 210 NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL 269
TD I + +R IV + +T D L+ + DV
Sbjct: 175 VNSTDDTIYLDIDNPIMRYIVHCELRNRFPEVLTTDSLGNSHKVLIYRN----GDV---- 226
Query: 270 IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
G T A + L + L T+ V GF ++I+L++ +KP++
Sbjct: 227 -----DGATSASMSTLEGN----------LITY-------VLGFSQIIELLAEYKKPIIG 264
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 382
HN D +HS+F+ PLP + F ++ FP + D Y+ ++G +K+T
Sbjct: 265 HNMYLDTLLLHSQFIGPLPKRYSAFKKNINNLFPNMYDTKYISHEMG--RKLT 315
>gi|449303050|gb|EMC99058.1| hypothetical protein BAUCODRAFT_59256, partial [Baudoinia
compniacensis UAMH 10762]
Length = 438
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 168/413 (40%), Gaps = 78/413 (18%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ +F L +I IS + F+AV L+ +G + R + + YL+ K AAER+
Sbjct: 3 VHNVSFYPLLLDILTDISEAHFVAVDLELSGVPTKRVRREVGKPSLQERYLETKEAAERY 62
Query: 92 QILQFAI-CPFKLQA-SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQF C + A +K I PYN L P + + F+ Q+ + + K GFD
Sbjct: 63 QILQFGFTCVHQDVANNKYILKPYNVDLSPLIQERGLEVERIFSFQSGAVDFLLKVGFDI 122
Query: 150 NTCIYDGISYLS-----EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+ Y G+ Y+S EA+E K + + MA D K + + +L+ F++RVRS
Sbjct: 123 SRPFYHGVPYISRDESREAREMHAKRQDKSAMA-DIQIKPTETESLA-----FLDRVRSE 176
Query: 205 VKHW---KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
+ W N D I + G + G+ D S + +LV +++
Sbjct: 177 INGWLQSSNTAKDDYININPI----------GAEGGNEDGAASDGLSRFEKRLVHQLVRA 226
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID--- 318
LV L K G Q VR D+ KREL E+ R +GFR V++
Sbjct: 227 EYPDLVSL---GKAGFVQVVRFNKEREDKVAADRKRELN----ERINRQKGFRWVVEALL 279
Query: 319 --------------------------------------LISASQKPLVAHNSLNDFTFIH 340
L+ + + +V HN D +I+
Sbjct: 280 GSDITRLDLRECARDPVTGEQVFADMDEFSAQFHRAQTLLRGNPRVIVGHNCFLDLVYIY 339
Query: 341 SKFLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIA 389
F+ LP ++ F L +P +ID Y+ DI PV + I+A ++
Sbjct: 340 RTFIGQLPDSVEAFQRKLHGLWPTIIDTKYMSTHNCGDISPVSSLEQIAAQLS 392
>gi|328785451|ref|XP_623432.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Apis mellifera]
Length = 535
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 160/370 (43%), Gaps = 52/370 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ KTNF +++ ++++ FIA+ + TG +S + S FD+ Y K
Sbjct: 1 MNEVLKTNFKTLYPKLEIAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNI 60
Query: 89 ERFQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
++F I+QF I F+ KV +NF+LFP+ + + + Q + L + K
Sbjct: 61 QQFMIIQFGIATFRHVPYENTYKVDC--FNFYLFPKS---IPLKNRHLIWQVAALEFLCK 115
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGN---PMAVDHATKSSSSPALSVADTVFIERV 201
F+FN + +GIS+L E E +K + ++H T + ++
Sbjct: 116 HNFEFNKFLKEGISFLDETDEKLLKNYIKEDSLAYNLNHLTYEEENEFIN---------Y 166
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
++++ W + +K E S P + + ++ K +
Sbjct: 167 KTKISEWIANKSGETLKVET----------------SNP--ILQYLIHKDIRHNYKNVWS 208
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 321
SD II + +R + DK+ L++EL + GF V L++
Sbjct: 209 ISDDKSVNIIEISPNMHEFIR------ENDKETLEKELLDYYI-------GFSIVFKLLA 255
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
+S+K +V HN L D F+H +F PLP + NEF ++ FPQ+ D +L ++ +
Sbjct: 256 SSKKIIVGHNILLDLMFMHQQFYKPLPNSYNEFKKNIHELFPQIYDTKFLSYEVRKLFSK 315
Query: 382 TNISATIAYL 391
+S I+ L
Sbjct: 316 EEVSWKISSL 325
>gi|71413865|ref|XP_809055.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70873378|gb|EAN87204.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 154/371 (41%), Gaps = 43/371 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDKFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRM-------------GNPMA-----VDHATK 183
+ + +F + +Y G++Y QE ++ R GN + K
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQRHEEKYRELDSIRNEGNQEVEGVSLLTEEEK 180
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRP--S 241
A+++A T F ER+++ ++ K + +L I GG + P S
Sbjct: 181 KWYDNAVTLAKT-FSERIQATLEQAKVKNAGQTAGMAEVSAALDLIQSGGREVFLPPQRS 239
Query: 242 MTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA-VRAVLTSSDEDKDLLKRELQ 300
+ ER V+ + F ++L L +G +RAV E+++ L+ + Q
Sbjct: 240 KSAREALERHVE------QHFHNLL--LTFRRQGAVHMGMLRAVFP---EERNRLREKEQ 288
Query: 301 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
F + + GFR V + + S+KP V HN L D F+ + PLP ++ +F +
Sbjct: 289 VFREGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMNE 348
Query: 361 AFPQVIDVNYL 371
FP V D Y+
Sbjct: 349 LFPIVFDTKYI 359
>gi|351701243|gb|EHB04162.1| Poly(A)-specific ribonuclease PARN, partial [Heterocephalus glaber]
Length = 617
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 96/387 (24%), Positives = 167/387 (43%), Gaps = 51/387 (13%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFA-AERFQ 92
+F +L ++ I +DF A+ + +G P T FDTPE + F + F
Sbjct: 2 DFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERCFISLFQHSMDFL 61
Query: 93 ILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 LFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFN 120
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIERV 201
GI YL++ +E ++ + A+ + + ++S +++ + FI++V
Sbjct: 121 KVFCKGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKFIDQV 180
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
+++ + + + E RK++ T+ R V ++ LE
Sbjct: 181 VEKIEDLLQSEENKTLDLEPCTGFQRKLIY----------QTLSWKYPRGVH--IETLE- 227
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDL 319
+ R V+ S +++ +RE Q EQ + GF VI
Sbjct: 228 ---------------TEKKERYVVISKVNEEERKRREQQKHAKEQEELNDAVGFSRVIHA 272
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 379
I+ S K +V HN L D +F PLP ++ EF FP+++D L+ P K
Sbjct: 273 IANSGKLVVGHNMLLDVMHTIHQFYCPLPADLKEFKEMTTCVFPRLLDTK-LMASTQPFK 331
Query: 380 KMTNISATIAYLKNRF----FAPIEME 402
+ N + ++A L+ R F P ++E
Sbjct: 332 DIIN-NTSLAELEKRLKETPFNPPKVE 357
>gi|260821597|ref|XP_002606119.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
gi|229291457|gb|EEN62129.1| hypothetical protein BRAFLDRAFT_125118 [Branchiostoma floridae]
Length = 490
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 9/163 (5%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT+ NF + + ++ + + F+ + + TG + P + FDTP+ Y K + +
Sbjct: 2 EITRHNFKQVIDQVSEAVDEASFLCIDGEFTGLNNGP--ALHGFDTPQERYDKLRKGSLD 59
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F +QF +C FK + S+ +A P+NF++FPR L P F CQ S L +A +G D
Sbjct: 60 FLFVQFGLCAFKYETEESRFVARPFNFYIFPR-PLNRNAPDCRFLCQASSLHFLASQGMD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS 191
FN DGI YLS E +M + + HAT+ SP +
Sbjct: 119 FNKVFRDGIPYLSPVDEQ----QMRDTLDQKHATQQLHSPPFT 157
>gi|363731664|ref|XP_426152.3| PREDICTED: poly(A)-specific ribonuclease (PARN)-like domain
containing 1 [Gallus gallus]
Length = 577
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 135/313 (43%), Gaps = 58/313 (18%)
Query: 72 STFDTPETAYLKAKFAAERFQILQFAICPFKLQAS-KVIAYPYNFHLFPRDELKMGMPSY 130
S FD+P Y K + + +RF I Q + F + S K + + YNF LFP +G+
Sbjct: 90 SLFDSPAERYQKVRQSVQRFTITQLGLAIFSEENSNKYVVHSYNFFLFPS---TLGVTDA 146
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
T TS + ++ GFD+N + DGI Y++E QE+ + R+ ++ K S+ L
Sbjct: 147 ELTLSTSSIQFLSHYGFDYNKFLKDGIPYMNELQENILSQRL-----LEGNWKVCSALNL 201
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
+V +++ V W A + D ++ L S +D
Sbjct: 202 NV-----VKKAIDEVTCWIAAAKEGDT---VILQDLSD------------SQMLD----- 236
Query: 251 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAV--------RAVLTSSDEDKDLLKRELQTF 302
VQLVL+ +P + G + + R +L SS D ++EL
Sbjct: 237 -VQLVLRQ-------ALPNVWTQPLGDNEVMVKKVSLQHRRLLESSSHDS--CQKELIL- 285
Query: 303 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 362
RGF + +I ++KPLV HN L D +H KF PLP + EF ++ F
Sbjct: 286 -----TSARGFTNLFQIIVRAKKPLVGHNMLMDLCHLHDKFYNPLPESYEEFKKNIHHLF 340
Query: 363 PQVIDVNYLLKDI 375
P +ID + K I
Sbjct: 341 PVLIDTKTVTKSI 353
>gi|383863398|ref|XP_003707168.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Megachile rotundata]
Length = 533
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 153/348 (43%), Gaps = 50/348 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ NFNE +++ ++++ FIA+ + TG + + S FD+ + Y K K
Sbjct: 1 MNEVLDENFNEVYLQLEKLVNNASFIAIDTELTGISADTEVKYSFFDSLDARYKKLKDTI 60
Query: 89 ERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E F I+Q+ I F + + A + F+L PR + + + T Q L +++
Sbjct: 61 ENFTIIQYGITVFHHAIDMNLYDADCFTFYLLPR---SLPLKNKQLTWQVDALEFLSRHN 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN + GI YL+E E + + + + LS D + ++++
Sbjct: 118 FDFNKLVNHGIPYLNEQDEKSFR------QYLKETNSTYKLNHLSYDDETNFKECMNKIQ 171
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK--MLEDFSD 264
+W L ++ R + E + VQ ++ ++E++ +
Sbjct: 172 NW-------------LFSNSRDFAVKLE------------VNNPLVQYLIHEIVIENYDN 206
Query: 265 VLVPLIIPA-KGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
+ IIP K + V A +++ DL + L ++ GF +V L+ +S
Sbjct: 207 I---RIIPGYKTITLKKVSANNFQEEDNGDLEQVVLDSY--------IGFSKVFKLLCSS 255
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+KP++ HN L D F + +F PLP +EF ++ FPQ+ D +L
Sbjct: 256 KKPIIGHNVLFDLMFTYQQFYKPLPAQYSEFKRNIHSIFPQIYDTKFL 303
>gi|320165859|gb|EFW42758.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 813
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/435 (22%), Positives = 171/435 (39%), Gaps = 67/435 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ ++NF L +K I+ DF+A+ + TG S + FDT Y K + +A +F
Sbjct: 3 VDRSNFASVLPLVKQAIAKCDFVAIDAEFTGLHSERAAASNHFDTLAERYAKVRRSASQF 62
Query: 92 QILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
+LQ+ +C F+ + A P+NF++F R + P F Q S + + FDF
Sbjct: 63 GVLQYGVCAFRWLPERHTYEAQPFNFYVFQRPATRES-PDAQFLSQASSIEFLIDNHFDF 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV----------------- 192
GI++++ +E ++ D ATK +++
Sbjct: 122 TRSFKTGITFINRTEEVALQEAY-----FDLATKQHHFRQVAIKNEAAKAATAAAATATA 176
Query: 193 ----------------ADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQF 236
A T +E + A D K + L+ S+ V
Sbjct: 177 TAVAAATATASSLNQDAATPMVESAATETP-VPAAPLSRDEKNKILLQSIMDTVAKWMAE 235
Query: 237 GSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPL---------IIPAKGG--------GTQ 279
+ P++ + VC+ +LV + E P+ PA G GT
Sbjct: 236 PAEPTLLLPVCTSYMRRLVYQAFEQVVPPKYPVGFLVESIDPTDPAPPGHKAMTITRGTA 295
Query: 280 AVRAVLTSSDEDKDLL-KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
+A + L ++E++ E + GFR VID IS +K +V HN L D
Sbjct: 296 EEKAQRQEARTQAQLAAQQEIKALADEMMHQAIGFRHVIDCISEHKKLVVGHNMLLDLAH 355
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL--KDIG---PVKKMTNISATIAYLKN 393
KF+ LP +++F FP V D +L ++G + ++ T+ Y +
Sbjct: 356 TFDKFIGDLPEQLDDFKNQFAQVFPYVADTKHLASSSELGGRFESTALADLVRTLLYESD 415
Query: 394 RFFAPIEMEIPNQAN 408
API +E+P++ N
Sbjct: 416 S--APINVELPDEFN 428
>gi|307167442|gb|EFN61018.1| Poly(A)-specific ribonuclease PARN [Camponotus floridanus]
Length = 571
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 147/340 (43%), Gaps = 33/340 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF + LSE+ + I ++ F+++ + TG S P FDTP Y K + +
Sbjct: 2 EVTCLNFQDVLSELDSIIQNATFLSIDGEFTGLNSGP--DAGPFDTPAQYYAKLRAGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FP+ L P F CQTS + +A + FD
Sbjct: 60 FLLVQFGLSTFTYDSQTDKYFQRSYNFYVFPK-PLNRHAPDCRFMCQTSSIAFLANQDFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YLS +E + R+ + + P +S D IE + SR++ +
Sbjct: 119 FNKLFKYGIPYLSANEEEKLVKRLEEKQKIKEEYNQALIP-ISDNDKPQIEEICSRIEDF 177
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
A +I + +R++V ++ R + V E +V+ L
Sbjct: 178 L-ASDAEEITIDKCNAFMRRLVY--QEAKIRWPNKVRV--ESKVENTWHCLS-------- 224
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
+ GT+ + +K+ L + K+ GF ++ I S+K +V
Sbjct: 225 ----IQKAGTKEEEEEKENQKREKEKL----------EIKQAVGFSSLLKKIVESEKIIV 270
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
HN L D I +F PLP + EF + FP ++D
Sbjct: 271 GHNMLLDLCHIVHQFFTPLPNDYIEFKILIHNLFPSLLDT 310
>gi|221115125|ref|XP_002160561.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Hydra
magnipapillata]
Length = 502
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 38/355 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T++NF+ + IK+ I+++DFI++ + +G S+ + E Y K + +
Sbjct: 2 EVTRSNFDAAFELIKSEINNTDFISIDAEFSG-LSTIKSNSGSCSNLEEKYNMLKDGSNK 60
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
++Q+ I FK K A P+NF++ PR K+ F CQ+S + +AK GFD
Sbjct: 61 LLLIQYGISLFKWSEKKKSYKAMPFNFYICPRPYKKVH-NDVIFVCQSSSIDFLAKNGFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSSSPALSVADTVFIERVRSRVKH 207
FN + G+S++S +E + ++ + + H + R R+ ++
Sbjct: 120 FNKLFHQGVSFMSPWEEEKAREKLKKEINFIAHNE---------------LHR-RTLIQT 163
Query: 208 WKNACTDSDIKTEALVTSLRKIVLGG-----EQFGSRPSM-TIDV--CSERQVQLVLKML 259
N D + K+ + ++ + E+F S+ T D+ CS Q L+ + L
Sbjct: 164 TTNVSDDVEKKSSVFIPRDQRDFINSVCENIEKFMKDDSLKTYDLPPCSPFQRTLLYEYL 223
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN---KRVRGFREV 316
E+ + L + +R V + +E ++ + + E+N + GF +V
Sbjct: 224 EEKYPRGLYLKSVVNENNEKIIRGVKITKNE--EIFNKRIA----EENLLLDEIIGFTKV 277
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
I L+S +KPL+ HN L D + F + P N++EF L F + D L
Sbjct: 278 IRLLSDCRKPLIGHNMLMDLFLTTTNFFSLPPENLSEFKVLLISLFSSIFDTKLL 332
>gi|303314657|ref|XP_003067337.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240107005|gb|EER25192.1| CAF1 family ribonuclease containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037661|gb|EFW19598.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 583
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 185/449 (41%), Gaps = 64/449 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKA 84
++TK++F ++L I N I+ S +A+ L+ +G FS + ST T ++ Y +
Sbjct: 2 EVTKSSFGQALPRILNDIAESCCVALDLEFSGIFSKQDRKPSTDGSSGGGRTLQSRYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
K AAE++QILQ + + + PYNF+L P + K+ + ++TCQ+S + +
Sbjct: 62 KEAAEKYQILQVGLTFIREDVDRGTYTLRPYNFNLNPIIDPKLDL-ERTWTCQSSAIDLL 120
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
+ GF + DG+ Y+S +E K R+ + + A + + +L F+E R
Sbjct: 121 LRSGFRMDAPFIDGVPYISREEEGMAKARVRDRQSRLAAMDNINFDSLDTESMAFLEEAR 180
Query: 203 SRVKHWKNACTDSD-----------------------------IKTE--ALVTSLRKIVL 231
+ W + + +++E LV+ R + +
Sbjct: 181 RLINDWVSKPNRKEEYVNIPSAEKRSANQPGINNYQKRLIHQLVRSEYPDLVSIGRAMFV 240
Query: 232 GGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDED 291
++ + + + RQV+ + ++ I+ A GG + + + +D
Sbjct: 241 QIVKYDKKRELNVQEGRMRQVRERI-----YNQTGFRWIVEAMTGGDLSRLSSDSVADSS 295
Query: 292 KDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP----LVAHNSLNDFTFIHSKFLAPL 347
+D R+ + F ID + A K LV HN D + F+ L
Sbjct: 296 RDPHGRKQKAFGH------------IDYLQAKLKSKRLVLVGHNIFTDLVNFYKCFIGGL 343
Query: 348 PPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQ 406
P + EF+ ++ FP ++D YL D G + + L+ R + +
Sbjct: 344 PDKVEEFLGNVHELFPMIVDTKYLATHDCGSALPSSALEELDESLRFRELPTFTTDAQHT 403
Query: 407 ANENEGKIH--GHNVVKICQLFGKLCSIL 433
+E +H G++ + ++F +L S L
Sbjct: 404 KYVDEKPVHEAGYDSLMTARVFLRLASQL 432
>gi|332020023|gb|EGI60474.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Acromyrmex echinatior]
Length = 607
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 153/347 (44%), Gaps = 48/347 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN+ ++ + +++FIA+ + TG S R S FD+ Y K + +
Sbjct: 3 EVTNQNFNKVYPHLERTLKNANFIAIDGEFTG-IESGDVRNSLFDSIYERYEKNRSHIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
+ I+QF I F+ +K IA +NF L PR +PS + F Q L + G
Sbjct: 62 YIIIQFGISAFQRVHDENKYIAEAFNFFLLPR-----TIPSKNRHFLWQIESLEFLTMYG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
F+FN Y+GISYL + ++ ++ ++ ++ +S +S + + +++
Sbjct: 117 FNFNELAYNGISYLDQTDKTLLEQQIQENTLFNNVEQS-----ISYKEEDNFKNTVTQIF 171
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W +D V S++ P+ T ++++ + FS
Sbjct: 172 EWLKTASDE-------VDSIKV---------KSPTPTFQYFMHKELRKRFSNIWTFS--- 212
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN--KRVRGFREVIDLISASQ 324
G V VL E + +L++E + F E + GF +V + + +
Sbjct: 213 --------GNNVITVIKVLP---ESRQILEQE-EGFILENTLLESYVGFSKVFNFLITLK 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
KP++AHN+ DF FIH +F PLP +F ++ FP + D +L
Sbjct: 261 KPIIAHNAFLDFMFIHQQFYKPLPQKYIDFKNNIHQLFPTIYDTKFL 307
>gi|149042528|gb|EDL96165.1| rCG49798 [Rattus norvegicus]
Length = 605
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 92/383 (24%), Positives = 167/383 (43%), Gaps = 60/383 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLPKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHANSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD--TVFIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALTKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ G Q + ++ ++ C+ Q +L+ + L
Sbjct: 181 IE-------------------------GFLQREEKRTLELNPCTGFQRKLIYQTL----S 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
P I + T + R ++ S ++++ +RE + + EQ K V
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYAKEQGKLV------------- 258
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 259 ----VGHNMLLDVMHTIHQFYCPLPVDLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN 313
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F P ++E
Sbjct: 314 -NTSLAELEKRLKETPFDPPKVE 335
>gi|71665029|ref|XP_819489.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70884792|gb|EAN97638.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 150/367 (40%), Gaps = 35/367 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDTFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ + +F + +Y G++Y QE ++ R H K ++ +E V
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQR--------HEEKYRELDSIHNEGNQEVEGV 172
Query: 202 ----RSRVKHWKNACTDSDIKTEALVTSLR--KIVLGGEQFGS-RPSMTIDVCSE--RQV 252
K + NA + +E + +L K+ G+ G S +D+ R+V
Sbjct: 173 SLLTEEEKKWYDNAVILAKAFSERIQAALEQAKVKNAGQTAGMVEVSAALDLIQSGGREV 232
Query: 253 QLVLKMLEDFSDVLV--------PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
L + + D L L++ + G + + E+++ L+ + Q F
Sbjct: 233 FLPPQRSKSARDALERHVEQHFHKLLLTFRRQGAVYIGMLRAVFPEERNRLREKEQAFRE 292
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
+ + GFR V + + S+KP V HN L D F+ + PLP ++ +F + FP
Sbjct: 293 GELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMNELFPT 352
Query: 365 VIDVNYL 371
V D Y+
Sbjct: 353 VFDTKYI 359
>gi|453085288|gb|EMF13331.1| CAF1-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 563
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 123/506 (24%), Positives = 196/506 (38%), Gaps = 88/506 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAER 90
I K +F L I IS S F+A+ L+ +G + W T + Y + K AAER
Sbjct: 3 IDKVSFYPQLLNILTDISKSHFVAIDLELSGVPTKASWGEGKP--TLQQRYAEIKDAAER 60
Query: 91 FQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ + + + +K + PYNF L P + F+ Q+ + GF+
Sbjct: 61 YQILQIGLTCVEQDTRDNKYVLRPYNFDLSPIINERGLDVERIFSFQSGAAEFLLSVGFN 120
Query: 149 FNTCIYDGISYLSEAQESTVK----VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
N DG+ YLS A+ + + R D K + AL+ F++RVRS
Sbjct: 121 MNRPFTDGVPYLSRAEAKSAREKYAKRQDKSAVADIQIKPTEFEALA-----FLDRVRSE 175
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ W+ A D E LV S Q + + D E + +++
Sbjct: 176 INTWR-ASKRLD-APEYLVIS---------QTSNHSTQESDFAEELS-RFEKRLVHQLVR 223
Query: 265 VLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV------- 316
P L+ +K G Q VR + E ++ L E + EQ R +GFR +
Sbjct: 224 AEYPELVTISKRGAIQIVRY----NKERENRLAAERERRMEEQINRQKGFRWIIEALHGG 279
Query: 317 ----IDLISASQKP------------------------------LVAHNSLNDFTFIHSK 342
IDL ++ P LV HN D +I+
Sbjct: 280 NVSQIDLRECAKDPVTGEPIYADLDDYKRQFNYTQAIMRGNPRILVGHNCFLDLVYIYRT 339
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIAYLKNRFFAP 398
F+ LP + EF L FP ++D Y+ DI P + I+ ++ L+ P
Sbjct: 340 FIGALPDTVEEFQQKLHKLFPVIVDTKYMSTHNCGDISPASSLEQIAEQLSDLET---PP 396
Query: 399 IEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS------A 450
+E + + EN H G++ Q+ +L + L+ IE +D S
Sbjct: 397 LETDPDHDKYENTEAFHEAGYDAYLTAQVAVRLSAKLEREGAYIEVHNDVTDSTNGQSNG 456
Query: 451 INRYANIFY-SLPGSSQEPTNEEIRG 475
+N A F S+PG+ + ++ G
Sbjct: 457 LNAQAQGFTPSIPGAKWKRCGDDTLG 482
>gi|407868227|gb|EKG08788.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 590
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 153/369 (41%), Gaps = 39/369 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F L + + S DF A + TG S+ S DTPE +Y + A R
Sbjct: 2 QVTRDTFPAVLPKFVELLKSCDFYAFDEEMTG-ISTAELPESITDTPEESYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQ-------ASKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP DE S S L
Sbjct: 61 YNIIQVGICLFHRENTAADSTPAHYVARPFNFVLFPHNSDEFNADERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRM-------------GNPMA-----VDHATK 183
+ + +F + +Y G++Y QE ++ R GN + K
Sbjct: 121 LRRHDMNFQSWVYQGMAYCDANQEEALRQRHEERYRELDSIRNEGNQEVEGVSLLTEEEK 180
Query: 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMT 243
A+++A T F ER+++ ++ K + +L I GG + P +
Sbjct: 181 KWYDNAVTLAKT-FSERIQAALEQAKVKNAGHTAGMAEVSAALDLIQSGGREVFLPPQRS 239
Query: 244 IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA-VRAVLTSSDEDKDLLKRELQTF 302
S R+ L + + F +L L +G +RAV E+++ L+ + Q F
Sbjct: 240 K---SAREA-LGRHVEQHFHKLL--LTFRRQGAVYMGMLRAVFP---EERNRLREKEQAF 290
Query: 303 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 362
+ + GFR V + + S+KP V HN L D F+ + PLP ++ +F + F
Sbjct: 291 REGELMNMLGFRLVFNALVESRKPCVGHNCLADLLFLLASLDGPLPDSLPKFKRRMNELF 350
Query: 363 PQVIDVNYL 371
P V D Y+
Sbjct: 351 PIVFDTKYI 359
>gi|380022861|ref|XP_003695254.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Apis florea]
Length = 633
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 163/371 (43%), Gaps = 53/371 (14%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++ NF +++N ++++ FIA+ + TG +S + S FD+ Y K
Sbjct: 1 MNEVLNKNFKTLYPKLENAVNNATFIAIDAEFTGLYSEEKLKHSFFDSFNDRYKLLKKNI 60
Query: 89 ERFQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
++F I+QF I F+ KV + N +LFP+ + + + Q + L + K
Sbjct: 61 QQFMIIQFGIATFRHVPYENTYKVDCF--NSYLFPKS---IPLKNRHLIWQVAALEFLCK 115
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRM-GNPMA--VDHATKSSSSPALSVADTVFIERV 201
F+FN + +GIS+L E E +K + G +A ++H T + FI+
Sbjct: 116 HNFEFNKFLNEGISFLDETDEKLLKNYIKGGSLAYNLNHLTYEE--------ENEFID-Y 166
Query: 202 RSRVKHW-KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 260
++++ W N ++ + + L+ ++ + ++ K +
Sbjct: 167 KTKISEWIANNKSEQTLNIQTSNPILQYLI------------------HKDIRYNYKNIW 208
Query: 261 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 320
SD +++ V S D + L K + + E E GF +V L+
Sbjct: 209 SISD-------------HKSIGIVEISPDMHELLKKNDEENLEKELLDYYIGFSKVFKLL 255
Query: 321 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK 380
S+S+K ++ HN L D F+H +F PLP + NEF ++ FPQ+ D +L ++ +
Sbjct: 256 SSSKKIIIGHNILLDLMFMHQQFYKPLPNSYNEFKNNIHELFPQIYDTKFLSYEVRKLFS 315
Query: 381 MTNISATIAYL 391
+S I+ L
Sbjct: 316 KEEVSWKISSL 326
>gi|426254329|ref|XP_004020831.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Ovis
aries]
Length = 577
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 144/329 (43%), Gaps = 48/329 (14%)
Query: 91 FQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTV-------KVRMGNPMAVDHATKSSSSPALSVAD--TVFIE 199
FN +GI YL++ +E + +++ A+ + + ++S +++ D FI+
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYTSPNTSKCPVTIPDDQKKFID 121
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 122 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 175
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 176 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 213
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P
Sbjct: 214 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQP 272
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 273 FKDIIN-NTSLAELEKRLKETPFNPPKVE 300
>gi|407394491|gb|EKF26952.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 590
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 149/370 (40%), Gaps = 41/370 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ F + + S DF A + TG ++ T DTPE Y + A R
Sbjct: 2 QVTRDTFPAVFPKFVELLKSCDFYAFDEEMTGISTTELPETIT-DTPEETYRAKRTVASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA 141
+ I+Q IC F + + +A P+NF LFP D+ S S L
Sbjct: 61 YNIIQVGICLFHKEKNAANSTPAHYVARPFNFILFPHNSDDFNANERSRDVVLSPSSLAF 120
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ + DF + +Y G++Y QE ++ R H K ++ +E V
Sbjct: 121 LRRHDMDFQSWVYQGMAYCDANQEEALRKR--------HEEKYRELDSIHNEGNQEVEGV 172
Query: 202 ----RSRVKHWKNACTDSDIKTEALVTSLRKIVL--GGEQFGS-RPSMTIDVCSE--RQV 252
K + NA T + +E + +L K + G+ G S +D+ R+V
Sbjct: 173 SLLTEEEKKWYDNAVTLAQAFSERIQAALEKAKVRNAGQTAGMVEVSAALDLIQSGGREV 232
Query: 253 QLVLKMLEDFSDVL----------VPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQT 301
L + + + L + L +G + RAV E+++ L+ + Q
Sbjct: 233 FLPPQRGKSAREALERHVEQHFHKLSLTFRRQGAVYMGILRAVFP---EERNRLREKEQV 289
Query: 302 FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
F + + GFR V + S+KP V HN L D F+ + PLP ++ EF +
Sbjct: 290 FREGELMNMLGFRLVFKALVESRKPCVGHNCLADLLFLLASLDGPLPESLPEFKRRMNEL 349
Query: 362 FPQVIDVNYL 371
FP V D Y+
Sbjct: 350 FPIVFDTKYI 359
>gi|440804573|gb|ELR25450.1| RNA binding domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 631
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 63/357 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ K F+ IK I S DF+A+ + TG +S R+++ D+ E Y K + +A +F
Sbjct: 3 VVKETFSAQFETIKQAILSCDFVAIDTELTGLSASKKARINSLDSVEERYGKLRESASKF 62
Query: 92 QILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+Q+ +C F K + +A P+NF++FP K P+ +T +S
Sbjct: 63 MTIQWGLCTFTKTSEGEYVAQPFNFYVFP----KPFHPNLDYTFVSS------------- 105
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPM-AVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
IY GI +L +E ++R P A A K AL D FI+ + W
Sbjct: 106 -LIYHGIPWLRRDEEE--RIRSSRPAEAAGGAPKDDV--ALGDKDKAFIDAI------W- 153
Query: 210 NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV-- 267
+ L R+I +G PS + + +L L F +
Sbjct: 154 ---------SAPLFPRFRRISVGP------PSRIDEWLKTGEKELRLAPCNSFQRRITYQ 198
Query: 268 --------PLIIPAKGGGTQAVRAVLTS--SDEDKDLLKRE-LQTFEFEQNKRVRGFREV 316
+ A+ +R ++ S SDE++ ++E Q + E V GFR V
Sbjct: 199 EVAKRYNNAIDASAQSDEGSHLRYIVLSRLSDEERSAKRQEKAQQGDAELEAAV-GFRRV 257
Query: 317 IDLISASQKPLVAHNSLNDFTFIHS-KFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
ID+++ ++KP+V HN L D +H+ FL PP ++F L FP ++D +++
Sbjct: 258 IDVLTEAKKPVVGHNLLLD--LVHTLSFLQLPPPTSDQFKSQLHSLFPTIVDTKFVV 312
>gi|401422399|ref|XP_003875687.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491926|emb|CBZ27199.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 596
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 161/382 (42%), Gaps = 36/382 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF L + + + DF A+ + TG TF ET Y + AA R
Sbjct: 2 QVRRDNFPAVLPHFQELLRTCDFYAIDEEMTGIGVPEVTETITFAPSET-YHSKRLAASR 60
Query: 91 FQILQFAICPFKL---------------QASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ A + AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSGATAAGVGTPAAPRYAAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ A +++++ P + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAA--AAASQSETTAEPLFTDA 178
Query: 194 DTVFIERVRS-------RVKHWKNACTDSDIKTEA-LVTSLRKIVLGGEQFGSRPSMTID 245
+ ++E R RV+ A T + +A V+ L + + G G + +
Sbjct: 179 ERAWLEEARQTAHALVRRVEAAWAAATSEARQQKAGRVSFLASVAVEG---GKEAVLPVQ 235
Query: 246 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFE 305
+ QL L++ + V V G + AVL+ + K+ +R + E
Sbjct: 236 ASRAAREQLELELGRECPQVSVRSRRTGSSGYVVTL-AVLSPEEVSKNAWRRAQK--ERR 292
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q GFR V + S+KP V HN D+ F+ S LP + ++ R FP +
Sbjct: 293 QLLDTVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCM 352
Query: 366 IDVNYLL--KDIGPVKKMTNIS 385
D YL +D+ P + +IS
Sbjct: 353 WDTRYLASRRDLFPGGRFGSIS 374
>gi|307174505|gb|EFN64967.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Camponotus floridanus]
Length = 509
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 44/345 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN ++ + ++ FIA+ + TG + + S FD+ Y K + + +
Sbjct: 3 EVTNENFNTIYPHLERTLKNASFIAIDTELTG-LNVDDVKNSLFDSINERYEKQRSSIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
+ I+QF I F+ ++ A +NF L PR +PS + F Q + L +
Sbjct: 62 YIIIQFGITAFQRIQHENQYTAEAFNFFLLPR-----SIPSKNRQFVWQVAALEFLTAYE 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN Y+GISYL+E ++ ++ ++ + + +S +S + ++ ++V
Sbjct: 117 FDFNKFAYNGISYLNEDDQAILQQQLEENVLFHNVERS-----MSYREEDSLKDYINQVF 171
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W N +D T+ KI P+ + + ++++ + FS
Sbjct: 172 EWLNTASDE--------TNSLKI--------DTPTPILQYLTHKELRNRFPNVWTFS--- 212
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
G V + D L + E E + GF +V L+ +KP
Sbjct: 213 ----------GNNMVTVMKIRPDSRAILEQEEGSILENVLLESYIGFSKVFKLLVTLKKP 262
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+VAHN+L D F++ +F PLP F SL FP + D +L
Sbjct: 263 IVAHNALLDLMFMYQQFYKPLPKKYTNFKDSLHQLFPTIYDTKFL 307
>gi|156388175|ref|XP_001634577.1| predicted protein [Nematostella vectensis]
gi|156221661|gb|EDO42514.1| predicted protein [Nematostella vectensis]
Length = 640
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +I ++NF++ L + I + F+AV + +G +S W + + D+P+ Y K K +
Sbjct: 42 VMEILRSNFSQCLPIVSEAIEEASFLAVDAEFSG-LNSHWKQQNALDSPQERYTKLKNTS 100
Query: 89 ERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F I+QF +C F +K IA P+NF++FPR ++ P F CQ+S L ++
Sbjct: 101 HDFIIVQFGLCAFIWNENLNKYIAKPFNFYIFPR-QIHRSTPDVRFLCQSSSLDFLSSHN 159
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDF I GISYL E ++
Sbjct: 160 FDFQKWITQGISYLRPYDEQKLR 182
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF V+ +IS S K +V HN L D I +F PLP ++++F +++ P+V+D +
Sbjct: 316 GFSAVMKMISDSGKLVVGHNMLLDLLHIVDQFFCPLPADLDDFKATVQSLLPRVLDTKVM 375
>gi|290998593|ref|XP_002681865.1| poly(A)-specific ribonuclease [Naegleria gruberi]
gi|284095490|gb|EFC49121.1| poly(A)-specific ribonuclease [Naegleria gruberi]
Length = 707
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/393 (22%), Positives = 152/393 (38%), Gaps = 104/393 (26%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
I +T+ NF+E EI+ + ++ FI+ L+ TG E YLK K +
Sbjct: 94 IIDVTRLNFDEKFQEIQELLPTTAFISFDLEMTG--------------LEVEYLKLKDSV 139
Query: 89 ERFQILQFAICPF-------------KLQASKVI-----------------------AYP 112
+ F+++Q +C + +Q ++I A P
Sbjct: 140 KAFEVIQVGLCLWFVKDVVEEQPATDSMQDDEIIDQAERLRRLIKSSMNKKTTTTVTAKP 199
Query: 113 YNFHLFPRDELKMGMPSYS---FTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
YNF++F P+ S F+CQ + L + D N I GISY++E +E ++
Sbjct: 200 YNFYVFKS-------PTRSANVFSCQNTCLQFLVNNKMDINKVIGQGISYMNEDEEEAIR 252
Query: 170 ---VRMGNPMAVDHATKSSSSPA-------LSVADTVFIERVRSRVKHWKNACTDSDIKT 219
R+ A + S L F+E +SRV W + D DI
Sbjct: 253 ENVTRITKQKAASATNRRKSDRGDKIQVENLKPEQREFLENCKSRVAEWFDNSEDDDINL 312
Query: 220 EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQ 279
+ T RK++ ++FG ++T + R T
Sbjct: 313 DPCNTFERKLLF--QEFGEMITLTTIYANNR---------------------------TA 343
Query: 280 AVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI-DLISASQKPLVAHNSLNDFTF 338
+R S + +++ ++RE++ E R GF +I +L + HN++ D
Sbjct: 344 FIRVQRASGESEEEKMQREIR----EAVNRDIGFSRIIRELKKHKHLFFIGHNAMLDMMH 399
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
I KF+ PLP + +F +R F VID Y+
Sbjct: 400 IVHKFIQPLPESSEQFKTIVRENFEHVIDTKYI 432
>gi|380013456|ref|XP_003690772.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis florea]
Length = 515
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 153/346 (44%), Gaps = 48/346 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + ++ F+ + + TG S P FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLVELDEILKNATFLCIDGEFTGLNSGP--DAGVFDTPAQYYAKLRTGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K YNF++FPR L P F CQTS ++ +A +GFD
Sbjct: 60 FLLIQFGLSVFTFNKEIQKYNQRSYNFYVFPR-PLNRTAPDCRFMCQTSSISFLASQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAV-DHATKSSSSPALSVADTVF--IERVRSRV 205
FN GI YL+ +E + R+ + D AT+ L ++D IE + SR+
Sbjct: 119 FNKLFKLGIPYLTVNEEEKLMKRLEEKQKIRDEATE-----ILPISDVERPQIEEICSRI 173
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL----VLKMLED 261
+ + T+ ++ E +R++V ++V+L LK+
Sbjct: 174 DEFVTSETE-ELLIEKCNAFIRRLVY------------------QEVKLRWPNKLKVESK 214
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 321
++ L+I G + + + + +K +++ + G ++ I+
Sbjct: 215 MNNFGCSLVIQRLGTKEEEEQREIEKREREKTEIQQAV------------GLSILMRKIA 262
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
S+K +V HN L D I +F LP + EF + FP+++D
Sbjct: 263 DSEKLIVGHNMLLDLCHIVHQFFGQLPESYLEFKSLVHSLFPRILD 308
>gi|154337822|ref|XP_001565137.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062184|emb|CAM36572.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 592
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 157/378 (41%), Gaps = 33/378 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF + + + DF AV + TG TF ET Y + AA R
Sbjct: 2 QVRRDNFPAVFPHFQKLLHTCDFYAVDEEMTGIGVPEVTETITFAPSET-YHSKRLAASR 60
Query: 91 FQILQFAICPFK---------------LQASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ + +AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSSAAAAGVGAPAPQRYVAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ ++ ++++ + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAATVS---QPETAAESLFTDA 177
Query: 194 DTVFIERVR----SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSE 249
+ +++E R + V + A ++ + V+ L + + G G + +
Sbjct: 178 ERLWLEEARQTAQALVGRVEAAWAEARQQKVGSVSFLASVAVEG---GKEAVLPVQASRA 234
Query: 250 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
+ QL L++ ++ + V A G AVL+ + K + + E Q
Sbjct: 235 AREQLELELAREYPQLSV-RSRRAGPSGYVVTLAVLSPEEVSKHAWRAAQK--ERRQLLD 291
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
GFR V + S+KP V HN D+ F+ S LP + ++ R FP + D
Sbjct: 292 TVGFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARARELFPCMWDTR 351
Query: 370 YLLK--DIGPVKKMTNIS 385
YL D+ P + NIS
Sbjct: 352 YLASRHDLFPRSRFDNIS 369
>gi|452984862|gb|EME84619.1| hypothetical protein MYCFIDRAFT_152853 [Pseudocercospora fijiensis
CIRAD86]
Length = 574
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/413 (24%), Positives = 171/413 (41%), Gaps = 78/413 (18%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSS-PWHRVSTFDTPETAYLKAKFAAER 90
+ KT+F L +I IS + F+A+ L+ +G S W + T + Y K AAER
Sbjct: 3 VNKTSFYPLLPDILTDISKAHFVAIDLELSGIPSHVSWG--AGKRTLDERYQAVKEAAER 60
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ + + + I PYNF L P + +F+ Q+ + GFD
Sbjct: 61 YQILQIGLTCVEQDVLNDRYILRPYNFDLCPLIYERGLDVERNFSFQSGAGEFLMGVGFD 120
Query: 149 FNTCIYDGISYLS-----EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
N DG+ YLS +A+ES K + +A D K + + L+ F++RVR
Sbjct: 121 MNKPFRDGVPYLSRSEARQARESYEKRQKRGNIA-DIEVKPTETETLA-----FMDRVRK 174
Query: 204 RVKHW---KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 260
V+ W KN T + + + +++ GE P + +R V +++
Sbjct: 175 EVQAWVDSKNVATHDYLN---IAPAGSDVLVNGESSAEMPRL-----EKRLVHQLVRA-- 224
Query: 261 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI 320
+F + L+ + Q V+ ED+ ++R+ + FE + N R +GFR +I+ +
Sbjct: 225 EFPE----LVTFGRRNFVQIVK--FDKEREDRIAVERK-ERFEAQLN-RQKGFRWIIEAM 276
Query: 321 SASQ-------------------------------------KPLVAHNSLNDFTFIHSKF 343
S + +V HN D +I+ F
Sbjct: 277 HGSNIANLDLMECAKDAPIFADMDTLKAEFFRAQNLLRGCPRVIVGHNCFLDMVYIYHTF 336
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNISATIAYLK 392
+ PLP EF L +P VID Y+ DI P+ + I+ + +L+
Sbjct: 337 IGPLPATAEEFQQKLHKLWPMVIDTKYMSTHNCGDIPPMSSLEQIADQLKHLE 389
>gi|343475142|emb|CCD13380.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 586
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 163/394 (41%), Gaps = 63/394 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+TK N L + + + + DF A + TG S T DTPE +Y + AA R
Sbjct: 2 QVTKDNLTAVLPKFMHLLQTCDFYAFDEEMTGINVSEIQETIT-DTPEESYRAKRAAASR 60
Query: 91 FQILQFAICPFKLQASKV--------IAYPYNFHLFPR--DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F+ + +A+P+NF LFP D+L S L
Sbjct: 61 YNIIQVGICLFQRKREGTETSTPVSYVAHPFNFVLFPNHMDDLTDVERPQDVVLSPSSLA 120
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP------------ 188
+ + +F + +Y G++Y + AQE+ ++ + H +K P
Sbjct: 121 FLRRHDMNFQSWVYRGMTYCNAAQEAALRQKHEE----KHGSKPKGLPCQQQRHHAQTME 176
Query: 189 -----------ALSVADTVFIERV-----RSRVKHWKNACTDSDIKTEALVTSLRKIVLG 232
A A V ER R+R + ++ T ++ +AL+ + G
Sbjct: 177 LLLEEEREWLNASLAAAKVLRERAQAALERARAQQTRHPRT---VELDALMDLKQS---G 230
Query: 233 GEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQ--AVRAVLTSSDE 290
G + +P + + R+ L M E + D+ + + GG +RA+ + E
Sbjct: 231 GREVILQPQRSKNA---REC-LEWHMDEHYEDIFLTF---RRAGGVYHGTMRALFPT--E 281
Query: 291 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 350
LL++E + + E ++ GFR V + S+KP V HN L D F+ + F P
Sbjct: 282 RAQLLEKERASRDRELVDKL-GFRLVFKALVESKKPCVGHNCLADILFLLASFDGEPPGT 340
Query: 351 MNEFICSLRLAFPQVIDVNYLL--KDIGPVKKMT 382
+ F + FP V D Y+ +D+ P + T
Sbjct: 341 LPAFKHRVGHLFPMVFDTKYIATRQDLFPPARFT 374
>gi|37681897|gb|AAQ97826.1| poly(A)-specific ribonuclease [Danio rerio]
Length = 660
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLTQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 372 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 404
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|197333695|ref|NP_001127949.1| poly(A)-specific ribonuclease PARN isoform 2 [Homo sapiens]
gi|194375568|dbj|BAG56729.1| unnamed protein product [Homo sapiens]
Length = 578
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 143/329 (43%), Gaps = 48/329 (14%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 121
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 122 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 175
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 176 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 213
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 214 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 272
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 273 FKDIIN-NTSLAELEKRLKETPFNPPKVE 300
>gi|390350398|ref|XP_785661.3| PREDICTED: poly(A)-specific ribonuclease PARN-like
[Strongylocentrotus purpuratus]
Length = 643
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 98/403 (24%), Positives = 152/403 (37%), Gaps = 106/403 (26%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAA 88
++T NFNE+L + + + F+A+ + TG S SSP FDTP Y K
Sbjct: 2 EVTIDNFNEALKLMSSALDHCSFVAIDGEFTGLHSGSSP----GVFDTPAERYQHLKENC 57
Query: 89 ERFQILQFAICPFKLQASK----------------------------------------- 107
F ++Q +C FK + K
Sbjct: 58 CDFLLIQLGVCIFKYEKQKKGYGYVAYPFNLYVFPRPSTRAAPDQRFLCQLGVCIFKYEK 117
Query: 108 ------VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLS 161
+AYP+NF++FPR + P F CQ+S + + GFDFN Y GI YL+
Sbjct: 118 QKKGYGYVAYPFNFYVFPRPSTRAA-PDQRFLCQSSSIDFLVSHGFDFNKVFYKGIGYLT 176
Query: 162 EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK-NACTDSDIKT- 219
VK E V+ R ++ NA SD
Sbjct: 177 AVDNMRVK-----------------------------EMVQQRHAQYEGNASLLSDCSPN 207
Query: 220 -EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGT 278
+ T+ R + + E +P + DV + L ED K G
Sbjct: 208 FNSPSTAKRPVEIPEEH---KPFID-DVRYPSGLHLDTHTTED------------KKGRF 251
Query: 279 QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
VR V + +E K L + +LQ E ++ G V+ +IS S K +V HN + D
Sbjct: 252 IVVRRV--TEEEKKKLAQDKLQA-ELDEVDEASGICRVMKMISESGKVVVGHNMMLDVIH 308
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
+ +F PLP + EF + F +++D ++ + P K++
Sbjct: 309 MMHQFTGPLPDTLLEFKSMVGCVFSRLLDTK-VMANTQPFKEL 350
>gi|60390548|sp|Q7ZU92.2|PARN_DANRE RecName: Full=Poly(A)-specific ribonuclease PARN; AltName:
Full=Polyadenylate-specific ribonuclease
Length = 660
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 372 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 404
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|328776032|ref|XP_392167.3| PREDICTED: poly(A)-specific ribonuclease PARN-like [Apis mellifera]
Length = 897
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 38/345 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L E+ + ++ F+ + + TG S P V FDTP Y K + +
Sbjct: 2 EVTSSNFQEVLVELDEILKNATFLCIDGEFTGLNSGPDGGV--FDTPAQYYAKLRTGSMD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F + K YNF++FPR +M P F CQTS ++ +A +GFD
Sbjct: 60 FLLIQFGLSVFTFNKEMQKYNQRSYNFYVFPRPLNRMA-PDCRFMCQTSSISFLASQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVF--IERVRSRVK 206
FN GI YL+ +E + R+ + + + L ++D IE + SR+
Sbjct: 119 FNKLFKLGIPYLTTNEEEKLMKRLEEKQRI----RDEGTEILPISDVERPQIEEICSRID 174
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ + T+ ++ E +R++V ++ R + V S+ + +F +L
Sbjct: 175 EFVTSETE-ELLIEKCNAFIRRLVY--QEVKLRWPNKLKVESK---------MNNFGCIL 222
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
V R +E +++ KRE + E +Q G ++ I+ S K
Sbjct: 223 V------------VQRLGTKEEEEQREIEKREREKTEIQQ---AVGLSILMRKIADSGKL 267
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+V HN L D I +F LP + EF + FP+++D +
Sbjct: 268 IVGHNMLLDLCHIVHQFFGQLPESYFEFKSLVHSLFPRILDTKII 312
>gi|41055217|ref|NP_957382.1| poly(A)-specific ribonuclease PARN [Danio rerio]
gi|29791562|gb|AAH50496.1| Zgc:56067 [Danio rerio]
Length = 647
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 372 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 404
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>gi|397525567|ref|XP_003832733.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
paniscus]
Length = 578
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 143/329 (43%), Gaps = 48/329 (14%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYIMKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 121
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 122 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 175
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 176 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 213
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 214 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 272
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 273 FKDIIN-NTSLAELEKRLKETPFNPPKVE 300
>gi|452843543|gb|EME45478.1| hypothetical protein DOTSEDRAFT_52745 [Dothistroma septosporum
NZE10]
Length = 585
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 165/415 (39%), Gaps = 81/415 (19%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS-SPWHRVSTFDTPETAYLKAKFAAER 90
+ K +F L +I + IS + F+A+ L+ +G S W + S T + YL+ K AAER
Sbjct: 3 VDKVSFYPLLLDIISDISEAHFVAIDLELSGVPSRGSWGKDSGKPTIQQRYLEIKEAAER 62
Query: 91 FQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QILQ I + K PYNF L P + F+ Q+ + GFD
Sbjct: 63 YQILQIGITCVDQNVHDGKYTLKPYNFDLSPVINERGLDVERIFSFQSGAAEFLLGVGFD 122
Query: 149 FNTCIYDGISYLSEAQESTVKVRMG-----NPMAVDHATKSSSSPALSVADTVFIERVRS 203
G+ YLS A+ + + N MA D K + + +L+ F+ERVR
Sbjct: 123 IGRPFRLGVPYLSRAESKVAREKFAMRQDKNSMA-DIQIKPTETESLA-----FLERVRG 176
Query: 204 RVKHWKNACTDSDIKTEALVTS--LRKIVLGGEQF--GSRPSMTIDVCSERQVQLVLKML 259
+ W +K+ + T L +G E G R + + +R V +++
Sbjct: 177 DINTW--------VKSRNMDTPAYLNIAPVGYETIHDGQRQAEELSRFEKRLVHQLVRA- 227
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDL 319
+F + L+ +K G Q VR + +R+L+ E+ R +GFR +I+
Sbjct: 228 -EFPE----LVTVSKKGFIQIVRFNKEREERIAADRRRDLE----ERIGRQKGFRWIIEA 278
Query: 320 ISASQ-----------------------------------------KPLVAHNSLNDFTF 338
+ S K +V HN D +
Sbjct: 279 LHGSNISNLDLRECAKDSVTGEPVFADMDDYKAQFNRAQGMLRGNPKVIVGHNCFLDMVY 338
Query: 339 IHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 389
I+ F+ LP N+ EF L +P V+D Y+ DI P+ + I+ ++
Sbjct: 339 IYRTFIGELPDNVEEFQRRLHKLWPVVVDTKYMTTHNCGDISPISSLEQIAEQLS 393
>gi|189240485|ref|XP_967921.2| PREDICTED: similar to Parn-A protein [Tribolium castaneum]
gi|270011407|gb|EFA07855.1| hypothetical protein TcasGA2_TC005425 [Tribolium castaneum]
Length = 584
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 81/144 (56%), Gaps = 5/144 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T +NF E L EI+ I+SS F+A+ + +G + ++ FDTP+ Y K + +
Sbjct: 2 EVTSSNFKEVLPEIEKVINSSTFLAIDCEFSGL--NVVSEINAFDTPKQYYEKVRKNCKE 59
Query: 91 FQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F +LQ+ I F+ AS+ YNF++F R + +P F CQTS + + +GFD
Sbjct: 60 FLVLQYGISAFRFDASEKNFKQQSYNFYIF-RRPINNNIPDQRFLCQTSSINFLMSQGFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN GISYL+ ++ES + ++
Sbjct: 119 FNKLFKFGISYLNISEESGYRDKL 142
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF +V+ +I S K +V HN DF KFL PL N EF F V+D ++
Sbjct: 261 GFTKVLRIIVESGKLIVGHNMCLDFLHTIDKFLTPLSVNYEEFKDCAHSLFRNVLDTKFM 320
Query: 372 -----LKDIGPVKKMTNISATIAYLKNRF-FAPIEMEIPNQA 407
KD+ + ++ T++ K F P+E+E Q
Sbjct: 321 SSSDEFKDLIQSTVLKSVLETVS--KTPFAIPPVEVEKGGQG 360
>gi|398404580|ref|XP_003853756.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
gi|339473639|gb|EGP88732.1| hypothetical protein MYCGRDRAFT_91566 [Zymoseptoria tritici IPO323]
Length = 677
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 106/424 (25%), Positives = 166/424 (39%), Gaps = 103/424 (24%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKAK 85
+ KT+F L +I IS + F+ + L+ +G + T D T + YL+ K
Sbjct: 51 VDKTSFYPLLLDILTDISDAAFVTIDLELSG--------IPTKDPAAGKPTLQQRYLETK 102
Query: 86 FAAERFQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAER+QILQ I + AS K + PYNF L P + F+ Q+ +
Sbjct: 103 EAAERYQILQIGITCVEQDASSGKYVLKPYNFDLSPVINERGLDVERIFSYQSGAAEFLL 162
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVK---VRMGNPMAV-DHATKSSSSPALSVADTVFIE 199
K GFD G+ YLS A+ T + V+ + AV D A K + +L+ F+
Sbjct: 163 KVGFDMGRPFTHGVPYLSRAESKTAREKFVKRNDRGAVADIAIKPTEVESLA-----FLA 217
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
RVRS+V W + +KT E P + +V +E++ + L
Sbjct: 218 RVRSQVDEW---VASTSMKTP-------------EYLNIVPFDSDNVSNEQKQE----EL 257
Query: 260 EDFSDVLVPLIIPA---------KGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRV 310
F LV I+ A + G Q ++ D + KR+L+ E+ R
Sbjct: 258 SRFEKRLVHQIVRAEYPELTTISRRGMIQVIKFDQEREDRIAEGRKRDLE----ERIARQ 313
Query: 311 RGFREVID-----------------------------------------LISASQKPLVA 329
+GFR +ID L+ + K LV
Sbjct: 314 KGFRWIIDAMHGGNITSLDLRECARDSVTGEYIFVNMDDMKGQFHRAQALLRNNPKVLVG 373
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL----LKDIGPVKKMTNIS 385
HN D +I+ F+ LP + EF L +P ++D Y+ DI P + I+
Sbjct: 374 HNCFLDLVYIYRTFIGTLPDTVEEFQRKLHKLWPVIVDTKYMSTHNCGDISPASSLEQIA 433
Query: 386 ATIA 389
++
Sbjct: 434 EQLS 437
>gi|326928857|ref|XP_003210589.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Meleagris
gallopavo]
Length = 574
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 143/323 (44%), Gaps = 36/323 (11%)
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKP-FNRSSPDVKFVCQSSSIDFLANQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSRVK 206
FN +GI YL++ +E ++ + + + S S SP + E + +
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNATKCPVAIPEDQKKFI- 120
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ +V + + + E S+ ++ C+ Q +L+ + L
Sbjct: 121 -------------DKIVEQIEEFLKNNEN----ESLELEPCTGFQRKLIYQTL----SWK 159
Query: 267 VPLIIPAKG-GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
P I + + R ++ S ++++ +RE Q EQ + GF V+ I+ S
Sbjct: 160 YPKGIHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANS 219
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
K ++ HN L D +F PLP +++EF FP+++D L+ P K + N
Sbjct: 220 GKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFKDIIN 278
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F+P ++E
Sbjct: 279 -NTSLAELEKRLKEVPFSPPKVE 300
>gi|348561225|ref|XP_003466413.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Cavia porcellus]
Length = 535
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 127/304 (41%), Gaps = 47/304 (15%)
Query: 51 SDFIAVSLQNTGSFS--SPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQA 105
+ F + ++ TG S S + ++S FD P YLK + + ++F I Q + F + ++
Sbjct: 22 ASFAGLDIEFTGLRSNLSRFQQISLFDLPSDWYLKTRQSIQQFSICQIGLSVFSSIEGES 81
Query: 106 SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQE 165
+ IA+ NF LFP G+ F+ Q S + + + GF++N + GI Y++E QE
Sbjct: 82 NMYIAHSCNFFLFPT---TFGILDTEFSFQASSVQFLNQYGFNYNKFLKKGIPYMNEEQE 138
Query: 166 STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTS 225
+K H+ + + S D ++ V V W + + D T +
Sbjct: 139 KKIK----------HSILTGNWKVRSTLDKDQVKVVIDEVTRWLDLAKEGDQITLPGMAG 188
Query: 226 LRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAV 284
R +VQLVL+ L + VL + K Q R
Sbjct: 189 FRAF---------------------EVQLVLRQALPNIWTVLRDQEVIVKKVSLQH-RWY 226
Query: 285 LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFL 344
L + D+D +E E RGF ++ +QKPLV HN + D +H KF
Sbjct: 227 LEHASGDRDSCWKE------EILLSARGFSVFFQMLVQAQKPLVGHNMMMDLLHLHEKFF 280
Query: 345 APLP 348
PLP
Sbjct: 281 RPLP 284
>gi|332240353|ref|XP_003269352.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Nomascus
leucogenys]
Length = 578
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 48/329 (14%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVFIE 199
FN +GI YL++ +E ++ + A+ + + ++S + + + FI+
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVPIPEDQKKFID 121
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 122 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 175
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 176 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 213
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 214 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 272
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 273 FKDIIN-NTSLAELEKRLKETPFNPPKVE 300
>gi|145538409|ref|XP_001454910.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422687|emb|CAK87513.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 153/352 (43%), Gaps = 47/352 (13%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQIL 94
NF ++ I I DF+ L+ TG + TF+ P YLK + + ++ I+
Sbjct: 7 NFEQNKQTIMEQIKLCDFLGFDLELTG-IKGEYQ--DTFEELPFERYLKIRKVSMKYNII 63
Query: 95 QFAICPFKLQASKVIAYPYNFHLFPRD-ELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
QF +C F + +A+PY F+LFP+D + +G+ Q + ++ G D+N I
Sbjct: 64 QFGLCIFIKKQKGYVAFPYTFYLFPQDLDDFVGL-------QVGAVFFNSEHGMDWNRWI 116
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
G+ YL+ AQ ++ D K F E++ VK
Sbjct: 117 NKGVGYLNRAQYQKLQ---------DDYNKDFQQLDQEELKNQF-EKILEDVK------- 159
Query: 214 DSDIKTEALVTSLRKIVLGGEQFG--SRPSMTIDVCSERQVQLVLKMLEDFSDVLV-PLI 270
D KT +R+++ E+F +TI+ + Q +++ LE + ++ +
Sbjct: 160 PIDKKT------IRELIDKLEKFNKSDEKQITIETTNGYQRKVIYTYLEAYQKNMIGESL 213
Query: 271 IPAKGGGTQAVRAVLTSSDEDKDLLK-RELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+ + T+ A + DE+K LLK QT GF ++ + I S+K +V
Sbjct: 214 LKGEMKITKLTNAEKQAKDEEKYLLKTNRFQT--------KTGFYQIWECILNSKKYIVG 265
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
HN D F +S F+ P + EF + +P + D Y+++ P++K+
Sbjct: 266 HNCFADIMFCYSHFVQCPPISWEEFKEDVVKHWPPIYDTKYIIQSAQPLEKI 317
>gi|392869996|gb|EAS28542.2| CAF1 family ribonuclease [Coccidioides immitis RS]
Length = 587
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/453 (21%), Positives = 181/453 (39%), Gaps = 68/453 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD------TPETAYLKA 84
++TK++F+++L I N I+ S +A+ L+ +G FS + ST T ++ Y +
Sbjct: 2 EVTKSSFSQALPRILNDIAESCCVALDLEFSGIFSKQDRKPSTDGSSGGGRTLQSRYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTS----Y 138
K AAE++QILQ + + + PYNF+L P + K+ + ++TCQ+S
Sbjct: 62 KEAAEKYQILQVGLTFIREDVDRGTYTLRPYNFNLNPIIDPKLDL-ERTWTCQSSDRHQA 120
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFI 198
+ + + GF + DG+ Y+S +E K R+ + A + + +L F+
Sbjct: 121 IDLLLRSGFRMDAPFIDGVPYISREEEGMAKARVRDRQTRLAAMDNINFDSLDTESMAFL 180
Query: 199 ERVRSRVKHW-----------------KNACTDSDIKTEA--------------LVTSLR 227
E R + W K + I LV+ R
Sbjct: 181 EEARRLINDWVSKPNRKEEYVNIPSAEKRSANQPGINNYQKRLIHQLVRSDYPDLVSIGR 240
Query: 228 KIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTS 287
+ + ++ + + + RQV+ + ++ I+ A GG + +
Sbjct: 241 AMFVQIVKYDKKRELNVQEGRMRQVRERI-----YNQTGFRWIVEAITGGDLSRLSSDAF 295
Query: 288 SDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP----LVAHNSLNDFTFIHSKF 343
+D +D R+ + F ID + A K LV HN D + F
Sbjct: 296 ADSSRDPHGRKQKAFGH------------IDYLQAKLKSKRLVLVGHNIFTDLVNFYKCF 343
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEME 402
+ LP + EF+ ++ FP ++D YL D G + + L+ R +
Sbjct: 344 IGGLPDKVEEFLGNVHELFPMIVDTKYLATHDCGSALPSSALEELDESLRFRELPTFTTD 403
Query: 403 IPNQANENEGKIH--GHNVVKICQLFGKLCSIL 433
+ +E +H G++ + ++F +L S L
Sbjct: 404 AQHTKYVDEKPVHEAGYDSLMTARVFLRLVSQL 436
>gi|146087155|ref|XP_001465741.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398015556|ref|XP_003860967.1| hypothetical protein, conserved [Leishmania donovani]
gi|134069841|emb|CAM68168.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322499191|emb|CBZ34262.1| hypothetical protein, conserved [Leishmania donovani]
Length = 601
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 155/384 (40%), Gaps = 40/384 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+ + NF + + + DF A+ + TG P + P Y + AA R
Sbjct: 2 QVRRDNFPAVFPHFQELLRTCDFYAIDEEMTG-IGVPEVTETITSAPSETYHSKRLAASR 60
Query: 91 FQILQFAICPFKL---------------QASKVIAYPYNFHLFPR--DELKMGMPSYSFT 133
+ I+Q +C F+ + AYP+NF LFP+ D+ +
Sbjct: 61 YSIIQVGVCLFRRIPVSSGAAAAGVGTPAPPRYAAYPFNFLLFPQFADDYTAEERAGDVV 120
Query: 134 CQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVA 193
S L + + G DF +YDG+++ ++E+ ++ R+ A +++++ P + A
Sbjct: 121 VSPSALAFLRRHGMDFQRWVYDGMAFCDASREAALRARLAA--AAASQSETTAVPLFTDA 178
Query: 194 DTVFIERVRSRVKHWKNACTDSDI--------KTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ ++E R + + K V L +V+ G G + +
Sbjct: 179 ERTWLEEARQTAQALVRRVEAAWAAATAEARQKKAGRVPFLASVVVEG---GKEAVLPVQ 235
Query: 246 VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLT--SSDEDKDLLKRELQTFE 303
+ QL L++ ++ L + ++ G+ LT S +E R Q E
Sbjct: 236 ASRAAREQLELELAREYPQ----LSVRSRRTGSSGYVVTLTVLSPEEVSKNAWRTAQK-E 290
Query: 304 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
+ Q GFR V + S+KP V HN D+ F+ S + LP + ++ R FP
Sbjct: 291 WRQLLDTVGFRLVFTELVNSRKPCVGHNCFADWLFLMSAMDSTLPEQLPQWKARARELFP 350
Query: 364 QVIDVNYLL--KDIGPVKKMTNIS 385
+ D YL +D+ P + +IS
Sbjct: 351 CMWDTRYLASRRDLFPSGRFGSIS 374
>gi|149610539|ref|XP_001516344.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Ornithorhynchus anatinus]
Length = 296
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 14/208 (6%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
NF ++LS++ I +DF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 15 NFKKNLSKVYQAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 74
Query: 94 LQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q+ +C FK SK + +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 75 FQYGLCTFKYDHTESKYVMKSFNFYVFPKP-FNRTSPDVKFVCQSSSIVFLANQGFDFNK 133
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDH--ATKSSSSPALSVADTV-------FIERVR 202
GI YL++ +E ++ ++ + + AT S SP S FI+ V
Sbjct: 134 VFRCGIPYLNQEEERQLREQLDEKRSQSNGAATLSYVSPNASKCPVTIPEDQKKFIDEVV 193
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIV 230
+++ + ++ E RK++
Sbjct: 194 EKIEELLQNEENKNLDLEPCTGFQRKLI 221
>gi|118349638|ref|XP_001008100.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89289867|gb|EAR87855.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 578
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 41/369 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I + NF ++ +I I S DFI+ + +G + + ++ +D+ E Y K K + +
Sbjct: 3 IDRNNFKDNYQKIIQLIQSCDFISFDCEFSGLATERFSKIRKYDSDEDIYQKLKHTVQNY 62
Query: 92 QILQFAICPF---KLQASKVIAYPYNFHLFP-----RDELKMGMPSYSFTCQTSYLTAMA 143
+LQ +C + K+Q K IAYPYN +L P + +K + Q MA
Sbjct: 63 HLLQIGLCIYTFCKVQ-KKYIAYPYNIYLNPVYTTSSESIKKQI------IQLECFNFMA 115
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
G DFN G+SY+ AQ+ K+ + +H ALS A +E++
Sbjct: 116 VNGLDFNKLYSSGLSYIKLAQKE--KILENSKYQQNHGI------ALSKASRDALEQIVK 167
Query: 204 RVKHW---KNACTDSDI--KTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK- 257
+++ + N D I K++ L T + K +G + + ++ +D + QL+++
Sbjct: 168 QIQEYDQDNNNTKDVTIECKSQYLCTKILKKQIGQAIYSCQ-NVNVDK-GQTNTQLIIRK 225
Query: 258 ----MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGF 313
+ F + I + + + D D D+ + E + + GF
Sbjct: 226 KKPTQNQYFKNKQAQDIDDDENNNNNGTEEIKQNGDGD-DVSNPSHSSSEID----LLGF 280
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
+++ I S++P++ H D + + F+ LP EF+ + FP VID L +
Sbjct: 281 SLIVEAIVNSKRPIIGHYMGYDLFYFYDHFIDVLPNTFVEFVEKVNKYFPYVIDTKVLAR 340
Query: 374 DI-GPVKKM 381
+ VKK+
Sbjct: 341 KLQNKVKKL 349
>gi|449277437|gb|EMC85602.1| Poly(A)-specific ribonuclease PARN, partial [Columba livia]
Length = 552
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAAERFQI 93
+F ++L+++ I SDF+A+ + +G P T FDTPE Y K K + F +
Sbjct: 2 DFKDNLTKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLL 61
Query: 94 LQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFDFN
Sbjct: 62 FQFGLCTFKYDHTEEKYIMKSFNFYIFPK-PFNRSSPDVKFVCQSSSIDFLANQGFDFNK 120
Query: 152 CIYDGISYLSEAQESTVKVRM 172
GI YL++ +E ++ ++
Sbjct: 121 VFRTGIPYLNQEEEKQLREQL 141
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI I+ S K ++ HN L D +F PLP +++EF FP+++D L
Sbjct: 264 GFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKELTSCVFPRLLDTK-L 322
Query: 372 LKDIGPVKKMTNISATIAYLKNRF----FAPIEME 402
+ P K++ N + ++A L+ R F+P ++E
Sbjct: 323 MASTQPFKEIIN-NTSLAELEKRLKEVPFSPPKVE 356
>gi|297292013|ref|XP_002808449.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like domain-containing protein 1-like [Macaca
mulatta]
Length = 538
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 42/273 (15%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
+A+K IA+ NF LFP G+ F+ Q S + + + GF++N + +GI Y++E
Sbjct: 87 EANKYIAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEE 143
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALV 223
QE ++ H + + S D I+ V +V W + + D T +
Sbjct: 144 QEKKIR----------HDILTGNWRVRSSPDKDQIKAVIDKVTRWLDLAKEGDWMTLPGI 193
Query: 224 TSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVR 282
+ +VQLVL+ L D VL + K Q R
Sbjct: 194 AGFQAF---------------------EVQLVLRQALPDIWTVLKDEGVVVKKVSKQH-R 231
Query: 283 AVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 342
L ++ D++ +E RGF ++ +QKPLV HN + D +H K
Sbjct: 232 WYLQNTSCDRESCWKEKILLS------ARGFSVXFQMLVKAQKPLVGHNMMMDLLHLHEK 285
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
F PLP + ++F ++ FP +ID + KDI
Sbjct: 286 FFRPLPESYDQFKQNIHSLFPVLIDTKNVTKDI 318
>gi|322802707|gb|EFZ22924.1| hypothetical protein SINV_00082 [Solenopsis invicta]
Length = 486
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 134/324 (41%), Gaps = 48/324 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NFN+ ++ + +++FIA+ + TG + S FD+ Y + +
Sbjct: 3 EVTNENFNQVYPHLEQTLKNANFIAIDGEFTG-IDGDDVKNSLFDSVHERYENNRINIQP 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAKEG 146
I+QF I F+ +K A +NF+L PR +PS + F L + G
Sbjct: 62 HIIIQFGISAFQRIQNENKYTAEVFNFYLLPR-----SIPSKARQFLWSIPALEFLTVYG 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN Y GISYL E E ++ ++ +D+ +S +S + + +++
Sbjct: 117 FDFNKLAYQGISYLDEVDEEFLQQQIQKNTLLDNVEQS-----ISYKEEEDFKDTATQIL 171
Query: 207 HW-KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED-FSD 264
W K A ++D S I+ C+ + K L FS+
Sbjct: 172 EWLKTASDETD------------------------SFKIESCTPTMQYFMQKTLRKRFSN 207
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQ 324
+ G + + + + L + E E + GF +V L+ +
Sbjct: 208 IWT-------FSGNNMITVIKVPPESRRMLEQEEGSILENVLLESYIGFSKVFKLLVTLK 260
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLP 348
KP++AHN L DF F+H +F PLP
Sbjct: 261 KPIIAHNPLLDFMFMHQQFYKPLP 284
>gi|312375716|gb|EFR23028.1| hypothetical protein AND_13786 [Anopheles darlingi]
Length = 330
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 146/341 (42%), Gaps = 34/341 (9%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQ 95
+F E L EI+ I + F A+ + TG S + FDTPE Y K A ++ I+Q
Sbjct: 10 DFAEQLPEIRKAIREASFFAIDCEFTGLASDRL--IFPFDTPEEVYQKTVEANTQYIIVQ 67
Query: 96 FAICPFKLQ------------ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
F +C F+++ ++ YNF+ +P+ ++ F+CQ L +A
Sbjct: 68 FGLCAFRVEPVADGDDESAATEPRLTYKCYNFYCYPKGR------THIFSCQGESLRFLA 121
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGN-PMAVDHATKSSSSPALSVADTVFIERVR 202
GFDFN +G+S+ +EA+ ++ + A ++++ A+T + V
Sbjct: 122 DHGFDFNKLFREGLSFATEAEAERLRSDLKERQANRAAALQAAADGTADDAETTDVNMVP 181
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
+H + ++ K EA + S K + ++ C+ Q +L+ +M+E
Sbjct: 182 VPAEHQEQ-IDETAAKIEAFLKSDDK------------ELIVNNCNGFQRKLIYQMIEHK 228
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA 322
+ + ++ + E+ ++++ E E + + G V+ +S
Sbjct: 229 YQQRISTSTITLENNHKCIKVERKRTAEEDQAIEQKRVAQENEDLQTMIGLSVVLQELSK 288
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
++K ++ HN D + +F PLP + EF + FP
Sbjct: 289 ARKLVIGHNIFLDLLYTIRQFFKPLPTDFKEFKKLTKEIFP 329
>gi|346464857|gb|AEO32273.1| hypothetical protein [Amblyomma maculatum]
Length = 498
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 133/345 (38%), Gaps = 45/345 (13%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++T NF EI+ I+ + F+A+ + TG S P S FD+ E Y K +
Sbjct: 1 MTEVTACNFESLAPEIEAAIAGAAFVAIDTEFTGLVSGPDATPSLFDSIEERYAKLRHTV 60
Query: 89 ERFQILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+ + Q IC F + + A + +L PR G F+ Q S + + + G
Sbjct: 61 TNYYVCQLGICTFTQVPGENVYTAKAFTVYLCPR---AFGSVDPEFSVQASSVEFLCRNG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FDFN C Y G+ Y + + + + N ++ P LS ++ V+
Sbjct: 118 FDFNKCFYGGVPYANRSFRRALDAYLLNEQYLE-------KPGLS--------KLYDSVR 162
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
HW N S ++ + L S P + +D+ + E L
Sbjct: 163 HWLNNNDRSKGSSD------NSLTLSPHDDLSIPVLMVDLRTRFPGLEFDVKPEGLRVTL 216
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
P P K V T E E VRGF + + +S KP
Sbjct: 217 PPNCAPTK---------VATDGRAPT----------EAELVDAVRGFSRCFETLVSSGKP 257
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+V HN L D ++++F PLPP E +L FP V D ++
Sbjct: 258 IVGHNMLLDLLMLYNQFCEPLPPTFAELKAALSAVFPLVYDTKHM 302
>gi|407929029|gb|EKG21868.1| Ribonuclease CAF1 [Macrophomina phaseolina MS6]
Length = 667
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 158/405 (39%), Gaps = 81/405 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ KT F L EI IS + F++ L+ +G + R T T E YL K AA+R
Sbjct: 2 EVDKTAFWGRLLEILQAISEAHFVSFDLELSGIPTK--ERSGTKMTLEERYLDIKAAADR 59
Query: 91 FQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPS-YSFTCQTSYLTAMAKEGF 147
+QILQ + + L PYNF+L P E ++ + +SF Q+ + GF
Sbjct: 60 YQILQIGLTCVQEDLDTESYTVRPYNFNLNPLLEERLDIERIWSF--QSGAAEFLLSHGF 117
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV----FIERVRS 203
+ + G+ YLS A+ K +A +S+ + D V F+ +VR
Sbjct: 118 QMDLPMTTGVPYLSRAEAQKAK-----ELAYARWDRSNIADVQLREDEVQSLEFVRKVRV 172
Query: 204 RVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263
+ W+N IV G+ G +P I + +LV +++
Sbjct: 173 VIDEWRNTG-----------KPYLNIVC-GDPTGDQPR--IPELGNFEKRLVHQLVRAEY 218
Query: 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISAS 323
LV + P Q V V + +K +L+ + ++ Q +R GFR +I+ +
Sbjct: 219 PELVSVPKP------QYVSIVHYDEEREKSILRGKKRSLR-GQIERQTGFRWIIEALCGG 271
Query: 324 Q---------------------------------------KP-LVAHNSLNDFTFIHSKF 343
Q +P LV HN D +++ F
Sbjct: 272 QLEIDAESFARDVHTGAVKSADMFDLKARFSRAQLALQRRRPALVGHNLFTDIIYLYRTF 331
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNI 384
+ PLPP + EF + FP V+D Y+ DI P + I
Sbjct: 332 IGPLPPTLEEFRVLIHQHFPLVVDTKYMATHNCGDINPKSSLEEI 376
>gi|350427143|ref|XP_003494666.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
impatiens]
Length = 821
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF E L E+ I S+ F+A+ + TG S P FDTP Y + +
Sbjct: 2 EVTSLNFQEVLVELDEVIKSATFLAIDGEFTGLNSGP--DAGAFDTPAQYYANLRSGSMD 59
Query: 91 FQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FPR L P F CQTS ++ +A + FD
Sbjct: 60 FLLIQFGLSVFTFNTQTQKYNQRSYNFYVFPR-PLNRTAPDLRFMCQTSSMSFLASQEFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN GI YL+ ++E + R+
Sbjct: 119 FNKLFKLGIPYLTASEEEKLIKRL 142
>gi|281348205|gb|EFB23789.1| hypothetical protein PANDA_014878 [Ailuropoda melanoleuca]
Length = 429
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 113/270 (41%), Gaps = 42/270 (15%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQES 166
+ +A+ NF LFP G+ FT Q S + + + GFD+N + +GI Y++E QE
Sbjct: 1 RYVAHSCNFFLFPT---TFGILDSEFTFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEK 57
Query: 167 TVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSL 226
+K H + + S D I+ V V W ++ + D T +
Sbjct: 58 KIK----------HNILTGNWRVRSSLDKDQIKVVIDEVTRWLDSAEEGDWMTLPGIA-- 105
Query: 227 RKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVL 285
G + F +VQLVL+ L D VL I K Q R L
Sbjct: 106 -----GFQAF--------------EVQLVLRQALPDIWTVLRDQGIIVKKVNKQH-RWYL 145
Query: 286 TSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLA 345
++ D+ +E RGF ++ +QKPLV HN + D +H KF
Sbjct: 146 ENTSCDRASCWKEKILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFR 199
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
PLP + ++F ++ FP +ID + +DI
Sbjct: 200 PLPESYDQFKLNIHNLFPVLIDTKNVTRDI 229
>gi|157118661|ref|XP_001659202.1| poly(a)-specific ribonuclease (deadenylation nuclease) [Aedes
aegypti]
gi|108883264|gb|EAT47489.1| AAEL001426-PA [Aedes aegypti]
Length = 582
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF E L I+ I + F A+ + TG S V FDTPE YLK +
Sbjct: 2 EITTKNFIEQLPTIRQTIREASFFAIDGEFTGLTSD--RNVLPFDTPEEVYLKTIDNSAD 59
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+Q +C F++ ++ +V +NF+ +P+ + + F+CQ + +A+ GFD
Sbjct: 60 FVIIQLGLCAFRVDPESGQVSYKCFNFYCYPKGRMHI------FSCQGESMRFLAENGFD 113
Query: 149 FNTCIYDGISYLSEAQESTVKVRM 172
FN +G+SY EA E ++ +
Sbjct: 114 FNKLFREGLSYCGEADEDRLRTEL 137
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%)
Query: 303 EFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF 362
E E +R+ G V+ +S ++K ++ HN L D FI +F PLP EF +R F
Sbjct: 253 ENEDLERMVGLSLVLQELSRARKLIIGHNMLLDLLFIIRQFFRPLPHCYQEFKKIVRELF 312
Query: 363 PQVIDVNYL 371
P ++D YL
Sbjct: 313 PLILDTKYL 321
>gi|71894805|ref|NP_001025800.1| poly(A)-specific ribonuclease PARN [Gallus gallus]
gi|53133784|emb|CAG32221.1| hypothetical protein RCJMB04_20e14 [Gallus gallus]
Length = 574
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 146/324 (45%), Gaps = 38/324 (11%)
Query: 91 FQILQFAICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK + K I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDHTEEKYIMKSFNFYIFPKP-FNRSSPDVKFVCQSSSIDFLANQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +GI YL++ +E ++ + + ++++ + +LS
Sbjct: 62 FNKVFRNGIPYLNQEEERQLREQYD-----EKRSQANGAGSLSYISP------------- 103
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQF---GSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
NA + E + KIV E+F S+ ++ C+ Q +L+ + L
Sbjct: 104 -NATKCPVVIPEDQKKIIDKIVEQIEEFLKNEENESLELEPCTGFQRKLIYQTL----SW 158
Query: 266 LVPLIIPAKG-GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISA 322
P I + + R ++ S ++++ +RE Q EQ + GF V+ I+
Sbjct: 159 KYPKGIHVETLESDKKERYIVISKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIAN 218
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMT 382
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 219 SGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVFPRLLDTK-LMASTQPFKDII 277
Query: 383 NISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F+P ++E
Sbjct: 278 N-NTSLAELEKRLKEVPFSPPKVE 300
>gi|431904573|gb|ELK09955.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Pteropus alecto]
Length = 446
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 114/270 (42%), Gaps = 42/270 (15%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQES 166
+ +A+ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E QE
Sbjct: 45 RYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEK 101
Query: 167 TVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSL 226
+K N + + +SS D I+ V + V W + + D T +
Sbjct: 102 KIK---QNILTGNWKVRSS-------LDKDQIKVVINEVTRWLDLAEEGDWMTLPGIAGF 151
Query: 227 RKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVL 285
+ +VQLVL+ L D VL + K Q R L
Sbjct: 152 QAF---------------------EVQLVLRQALPDIWTVLRDQGVIVKKVSKQH-RWYL 189
Query: 286 TSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLA 345
++ D++ +E RGF ++ +QKPLV HN + D +H KF
Sbjct: 190 ENTSCDRESCWKEKILLS------ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFR 243
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
PLP + ++F ++ FP +ID + KDI
Sbjct: 244 PLPESYDQFKLNIHNLFPVLIDTKNVTKDI 273
>gi|148664946|gb|EDK97362.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_a [Mus musculus]
Length = 563
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 147/323 (45%), Gaps = 43/323 (13%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSRVK 206
FN GI YL++ +E ++ + + + + + +++ + FI++V +++
Sbjct: 62 FNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEKIE 121
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
+ L E+ + S+ +D C+ Q +L+ + L
Sbjct: 122 DF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS----WK 152
Query: 267 VPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISAS 323
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+ S
Sbjct: 153 YPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANS 212
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
K +V HN L D +F PLP ++NEF FP+++D L+ P K + N
Sbjct: 213 GKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDIIN 271
Query: 384 ISATIAYLKNRF----FAPIEME 402
+ ++A L+ R F P ++E
Sbjct: 272 -NTSLAELEKRLKETPFDPPKVE 293
>gi|432111779|gb|ELK34824.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Myotis davidii]
Length = 494
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 111/274 (40%), Gaps = 43/274 (15%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
Q + IA+ NF LFP G+ F+ Q S + + + GFD+N + GI Y++E
Sbjct: 42 QQIRYIAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYGFDYNKFLKHGIPYMNEE 98
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALV 223
QE +K H + + S D ++ V V W + + D T +
Sbjct: 99 QEKQIK----------HNILTGNWRVRSSLDKDQMKAVIDEVTRWLHLAEEGDWMTLPGI 148
Query: 224 TSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVR 282
+ +VQLVL+ L D VL + K Q R
Sbjct: 149 AGFQAF---------------------EVQLVLRQALPDIWTVLRDQAVIVKKVSRQH-R 186
Query: 283 AVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID-LISASQKPLVAHNSLNDFTFIHS 341
L ++ D++ +E RGF L+ A ++PLV HN L D +H
Sbjct: 187 WYLQNTSSDRESCWKEKILLS------ARGFSVFFQMLVKAQKQPLVGHNMLMDLLHLHE 240
Query: 342 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
KF PLP N ++F ++ FP ++D + KDI
Sbjct: 241 KFFRPLPENYHQFKSNIHSLFPVLLDTKNVTKDI 274
>gi|145503682|ref|XP_001437815.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404972|emb|CAK70418.1| unnamed protein product [Paramecium tetraurelia]
Length = 516
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 41/349 (11%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQIL 94
NF + I + I DF+ L+ TG + TF+ P YLKA+ + ++ I+
Sbjct: 7 NFEQHKQTIMDQIKHCDFLGFDLELTG-IKGDYQ--DTFEELPFERYLKARKVSMKYNII 63
Query: 95 QFAICPFKLQASKVIAYPYNFHLFPRD-ELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCI 153
QF + F AYPY F+LFP+D + +G+ Q + ++ G D+N I
Sbjct: 64 QFGLSIFIKSQKGYQAYPYTFYLFPQDLDDFVGL-------QVGAIFFNSEHGMDWNRWI 116
Query: 154 YDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACT 213
G+ Y++ AQ ++ + K T F E++ VK
Sbjct: 117 NKGLGYINRAQYQKLQ---------EDYNKDFQQLDQEELKTQF-EKILDDVKA------ 160
Query: 214 DSDIKT-EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIP 272
+D KT + L+ L K ++ TI+ + Q +++ LE + ++ +
Sbjct: 161 -ADKKTIQDLIDKLEKFNKSDDK-----QTTIETTNGYQRKVIYTYLEAYQKNMIGESLL 214
Query: 273 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNS 332
G + + + + KD E Q F+ ++ + GF ++ + I S+K LV HN
Sbjct: 215 K---GEMKITKLTNAEKQAKD---DERQKFKADRFQTKTGFYQIWECILNSKKYLVGHNC 268
Query: 333 LNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
D F +S F+ P + EF + +P + D Y+++ P++K+
Sbjct: 269 FADVMFCYSHFVQCPPISWEEFKEDIARNWPPIYDTKYIIQSAQPLEKI 317
>gi|78484343|dbj|BAE47488.1| polyA specific ribonuclease [Arabidopsis thaliana]
Length = 131
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K +
Sbjct: 37 PLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKDS 96
Query: 88 AERFQILQFAICPFKL--QASKVIAYP 112
AE+F ++QF +CPF+ + ++YP
Sbjct: 97 AEKFAVVQFGVCPFRWDSRTQSFVSYP 123
>gi|391342764|ref|XP_003745685.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Metaseiulus
occidentalis]
Length = 747
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 142/352 (40%), Gaps = 17/352 (4%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFA 87
I +TK+NFN+ +I+ I F A+ + TG P H DT Y K +
Sbjct: 117 IMDVTKSNFNDLKPQIEEAIEKCSFAAIDCEFTGLVLPEPLH---PLDTVAQRYQKLRVG 173
Query: 88 AERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ++QF + + K F++F + + ++ F Q S L+ + GF
Sbjct: 174 ISEYLVVQFGLSLWTFDEEKQAYNVKTFNIFTYPDQRQ---AFRFRNQASCLSFLVDHGF 230
Query: 148 DFNTCIYDGISYLSEAQ----ESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRS 203
D N C+ +G+ +L A+ + +K R +A + + P +
Sbjct: 231 DLNRCVREGVPFLRPAELDDYQERIKRRHIRELASLFEQEQAGRPVKGFNTSADALNSSL 290
Query: 204 RVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DF 262
++ + I E ++ + K + G + + S+ + C++ V + +E F
Sbjct: 291 TSDNFLDMDPAVRIYLEGVMPLVSKWMSG--KMPDQDSVLLPACNDFIRMTVYRQIEKKF 348
Query: 263 SDVLVPL-IIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFREVIDL 319
D + + A G Q + S D +R Q E E + G V+
Sbjct: 349 PDDKFQMEAVRADNGADQRGSKHIKISRSDMSPHQRMSQRHRDEMEALRDSFGVGSVLKT 408
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ SQKP+V HNSL D + +F+APLP + EF R FP + D +
Sbjct: 409 LVTSQKPVVGHNSLRDILHVIHQFVAPLPEDFGEFQLLCRELFPVLFDTKQM 460
>gi|72392633|ref|XP_847117.1| ribonuclease [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62176010|gb|AAX70132.1| ribonuclease, putative [Trypanosoma brucei]
gi|70803147|gb|AAZ13051.1| ribonuclease, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 586
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 157/388 (40%), Gaps = 53/388 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ N L + + + DF A + TG + P S DTP+ Y + AA R
Sbjct: 2 QVTRDNLPTVLPKFVQLLKTCDFYAFDEEMTG-INVPELPESVTDTPQETYNAKRAAASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR---DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F + + +A P+NF +FP D +G S L
Sbjct: 61 YNIIQVGICLFHKNSENGPSTPASYVARPFNFVIFPNHEDDSPSLGRGD-DVVLNPSSLA 119
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQE----------------STVKVRMGNPMAVDHATKS 184
+ + +F + +Y G+ Y A+E + + R + +++ T+
Sbjct: 120 FLRRHDMNFQSWVYRGMGYCDAAREVVLRQNHEEKYHPNLNDSTEQRRRHAQSMELLTQE 179
Query: 185 SSS---PALSVADTVFIERVRSRVKHWKNACTDSD----IKTEALVTSLRKIVLGGEQFG 237
S A++ A ++ ER R+ V+ + C + I+ +A + R GG +
Sbjct: 180 ERSWFDGAVAAAQSL-CERARAAVERAQAQCAEKGSPGAIELDAAMDLQRS---GGREVV 235
Query: 238 SRPSMTIDV--CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL 295
+P + C +R + + F D+ L G VL ++ + +L
Sbjct: 236 IQPQRNKNARECLQRHIA------QHFQDI--SLTFRRSGSTYHGTFKVLFPGEQAR-IL 286
Query: 296 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
++E E E + GFR V + S KP V HN L D F+ + LP + EF
Sbjct: 287 EKECALRERELVDML-GFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFK 345
Query: 356 CSLRLAFPQVIDVNYLL--KDIGPVKKM 381
+ FP+V D Y+ +D+ P +
Sbjct: 346 HRVVQLFPKVFDTKYIASRQDLFPAGRF 373
>gi|428182900|gb|EKX51759.1| hypothetical protein GUITHDRAFT_102366 [Guillardia theta CCMP2712]
Length = 654
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 144/344 (41%), Gaps = 32/344 (9%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I ++ F + S+I++ + S +F + L+ T + + E Y+K + A
Sbjct: 112 IDRSMFPQVASQIESMLPSCEFYTLDLEMTSL--QTYDEFQWMEDLEDRYMKMREVASSN 169
Query: 92 QILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
I+ +C F + +IA PY F +FP P + T + + + DF
Sbjct: 170 SIISVGLCIFHKDEKNGGLIARPYTFFVFPSSRSSS-SPRVTLDVNTIHEFHIGQCQLDF 228
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV--ADTVFIERVRSRVKH 207
N YDGI Y E V+ + V+ + S P D V + R+ +
Sbjct: 229 NRWFYDGIPYTDALGEVYVRYDVMRQFGVEKSEFRQSRPVAITREGDLVLLNRLMDGLDA 288
Query: 208 WKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 267
W N + E + S + R ++ V + + +LV+ ++ + LV
Sbjct: 289 WMNGVGEQAGNEEYMFPSANSFI--------RLALQQQV-AMKYPKLVVMTRKEPCNPLV 339
Query: 268 PLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
++ ++G + R ++++ +L+ L GFR + +++S+S+KP+
Sbjct: 340 MRLVCSRGDESWRKR----TTEKAHQILQSRL------------GFRHIFNVLSSSKKPM 383
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
V HN L D F+ S F LP + EF + +FPQV D YL
Sbjct: 384 VVHNGLYDLMFLISHFECRLPNTLMEFKSIVHRSFPQVYDTKYL 427
>gi|384245538|gb|EIE19031.1| CAF1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 600
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 122/299 (40%), Gaps = 49/299 (16%)
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAK 144
A+ F + QF + F + K A +NF+LFP L M +P F CQ L +A
Sbjct: 27 GAQNFLVSQFGVSFFCWEGGKYEAQTFNFYLFP---LPM-LPGQDKRFLCQAGSLEFLAG 82
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN +Y+GI ++ A + ++ +S+ T +E V S
Sbjct: 83 QGFDFNKFVYEGIPFMRVADRDRRLAGL---------SREPCRSEISIHKTEDVEFVSSL 133
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE--DF 262
V+ V+S K G + ++ + Q + + LE F
Sbjct: 134 VQQ---------------VSSWLK--------GREKELMLEEVNGYQRAIQYQQLEKPQF 170
Query: 263 SDVLVPLIIPAKGGGTQAVRAV-LTSSD----EDKDLLKRELQTFEFEQNKRVRGFREVI 317
P G Q RA+ LT + E +L K+E EFE+ + GF V+
Sbjct: 171 GAAQPPGFYFESAAGPQGRRAIRLTRTTAAEVEAFNLRKKEA---EFEKVRAAAGFCAVL 227
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDI 375
+ + S KP V HN D TF PLPP+ F ++ FP + D YL+K +
Sbjct: 228 ERLRDSGKPAVGHNCAFDLTFTLEHLAQPLPPDWTAFKRLVQSWFPGGLWDTKYLVKQL 286
>gi|340716096|ref|XP_003396538.1| PREDICTED: poly(A)-specific ribonuclease PARN-like [Bombus
terrestris]
Length = 809
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++T NF E L E+ I + F+A+ + TG S P FDTP Y K + +
Sbjct: 2 EVTSLNFQEVLVELDEVIKNGTFLAIDGEFTGLNSGP--DAGAFDTPAQYYAKLRSGSMD 59
Query: 91 FQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F ++QF + F Q K YNF++FPR L F CQTS ++ +A FD
Sbjct: 60 FLLIQFGLSVFTFNTQTQKYNQRSYNFYVFPR-PLNRTATDLRFMCQTSCMSFLASREFD 118
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183
FN GI YL+ ++E + R+ + T+
Sbjct: 119 FNKLFKLGIPYLTASEEEKLIKRLEEKQKIRDETE 153
>gi|261330312|emb|CBH13296.1| ribonuclease, putative [Trypanosoma brucei gambiense DAL972]
Length = 586
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 156/388 (40%), Gaps = 53/388 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ N L + + + DF A + TG + P S DTP+ Y + AA R
Sbjct: 2 QVTRDNLPTVLPKFVQLLKTCDFYAFDEEMTG-INVPELPESVTDTPQETYNAKRAAASR 60
Query: 91 FQILQFAICPFKLQA-------SKVIAYPYNFHLFPR---DELKMGMPSYSFTCQTSYLT 140
+ I+Q IC F + + +A P+NF +FP D +G S L
Sbjct: 61 YNIIQVGICLFHKNSENGPSTPASYVARPFNFVIFPNHEDDSPSLGRGD-DVVLNPSSLA 119
Query: 141 AMAKEGFDFNTCIYDGISYLSEAQE----------------STVKVRMGNPMAVDHATKS 184
+ + +F + +Y G+ Y A+E + + R + +++ T+
Sbjct: 120 FLRRHDMNFQSWVYRGMGYCDAAREVVLRQNHEEKYHPNLNDSTEQRRRHAQSMELLTQE 179
Query: 185 SSS---PALSVADTVFIERVRSRVKHWKNACTDSD----IKTEALVTSLRKIVLGGEQFG 237
S A++ A ++ ER R+ V+ + C + I+ +A + R GG
Sbjct: 180 ERSWFDGAVAAAQSL-CERARAAVERAQAQCAEKGRPGAIELDAAMDLQRS---GGRDVV 235
Query: 238 SRPSMTIDV--CSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLL 295
+P + C +R + + F D+ L G VL ++ + +L
Sbjct: 236 IQPQRNKNARECLQRHIA------QHFQDI--SLTFRRSGSTYHGTFKVLFPGEQAR-IL 286
Query: 296 KRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
++E E E + GFR V + S KP V HN L D F+ + LP + EF
Sbjct: 287 EKESALRERELVDML-GFRLVFKALVESSKPCVGHNCLADVLFLLASLDGELPAALPEFK 345
Query: 356 CSLRLAFPQVIDVNYLL--KDIGPVKKM 381
+ FP+V D Y+ +D+ P +
Sbjct: 346 HRVVQLFPKVFDTKYIASRQDLFPAGRF 373
>gi|14388565|dbj|BAB60801.1| hypothetical protein [Macaca fascicularis]
Length = 300
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F ESL ++ + +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEESLPLLQELVQEADFVGLDIEFTGLRSNLSGP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPFKL---QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F +A+K IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 67 CQIGLSVFSAIEGEANKYIAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFNYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE ++ H + + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIR----------HDILTGNWRVRSSPDKDQIKAVIGKVTRWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAKEGDWMT 182
>gi|395860984|ref|XP_003802777.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 1 [Otolemur
garnettii]
Length = 573
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 32/310 (10%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ + P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRFS-PDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN ++GI YL++ +E ++ + + A + SP S E + +
Sbjct: 62 FNKVFHNGIPYLNQEEERQLREQYDEKRS--QANGAYVSPNASKCRLTIPEDQKKFI--- 116
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ +V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 117 -----------DQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SWKYP 157
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQK 325
I + T+ + S D++ KR Q ++ + + GF VI I+ S K
Sbjct: 158 KGIHVETLETEKKEQYIAISKVDEEERKRREQEKHAKEQEELNDAVGFSRVIHAIANSGK 217
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
++ HN L D +F PLP ++ +F FP+++D L+ P K + N +
Sbjct: 218 LVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK-LMASTQPFKDIIN-N 275
Query: 386 ATIAYLKNRF 395
++A L+ R
Sbjct: 276 TSLAELEKRL 285
>gi|344252660|gb|EGW08764.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 364
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 138/349 (39%), Gaps = 93/349 (26%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAE 89
+ F ESLS +++ I +DF+++ +Q TG S SS ++S FD P Y+K + +A
Sbjct: 3 VDADQFAESLSFLRDIIYEADFVSLDIQVTGLHSNSSQPQQISLFDLPSEWYMKTRQSAS 62
Query: 90 RFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
Q L + GFD+
Sbjct: 63 SVQFLN------------------------------------------------QYGFDY 74
Query: 150 NTCIYDGISYLSEAQESTVK--VRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
N + +GI Y++E QE ++ + GN + SS D I+ V +V
Sbjct: 75 NKFLKNGIPYMNEEQEKKLRESILRGN-------WRVGSS-----LDKDQIKVVIDKVTR 122
Query: 208 WKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM-LEDFSDVL 266
W + + D ++ L G I +VQ+VL+ L D VL
Sbjct: 123 WLDLAEEGD-----------RMTLPG----------IAGFQAYEVQMVLRQALPDIWTVL 161
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
+ K +Q R L + D +++ + E RGF I+++ +QKP
Sbjct: 162 KDEGVVVKKV-SQPHRWYLENDSCD------QIRCWRQEILLSARGFSGFIEMLVRAQKP 214
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
L+ HN D +H KF PLP + +EF ++ FP VID + KDI
Sbjct: 215 LIGHNMTMDLLHLHEKFFKPLPESYDEFKQNIHSLFPVVIDTKNVSKDI 263
>gi|148670094|gb|EDL02041.1| mCG121400, isoform CRA_b [Mus musculus]
Length = 207
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 2 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 60
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 61 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 117
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 118 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 167
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 168 LAEEGDQMT 176
>gi|148670093|gb|EDL02040.1| mCG121400, isoform CRA_a [Mus musculus]
Length = 280
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAEEGDQMT 182
>gi|149027455|gb|EDL83045.1| rCG44902 [Rattus norvegicus]
Length = 273
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAAERFQI 93
F +SL ++ ++ +DF+ + ++ TG + S P ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPFLQELVAGADFVGLDIEFTGLRSNLSRP-QQISLFDLPSEWYLKTRQSVQQFTI 66
Query: 94 LQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 67 CQIGLSMFSSVEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYN 123
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ +GI Y++E QE +K H+ + S D I+ V +V W +
Sbjct: 124 KFLKNGIPYMNEEQEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLD 173
Query: 211 ACTDSDIKT 219
+ D T
Sbjct: 174 LAEEGDQMT 182
>gi|345329209|ref|XP_001509823.2| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1-like [Ornithorhynchus
anatinus]
Length = 735
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 122/304 (40%), Gaps = 59/304 (19%)
Query: 74 FDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSY 130
FD+P Y K + F Q + F + ++K A+ YNF LFP G+
Sbjct: 47 FDSPAEWYAKTRPDIRLFTACQIGLSVFAGGEGNSNKYEAHSYNFFLFP---TTFGILDS 103
Query: 131 SFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
+ Q S + + + GFD+N + +G+ YL+E QE ++ A S +
Sbjct: 104 QISFQASSIEFLNRYGFDYNKFLKNGVPYLNEEQEERIQ----------QALLSGNWKVR 153
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
D ++ V V W D D T VT +
Sbjct: 154 RTVDRDQLKAVIGEVTRWLALAQDGDRMTLRGVTGFQVF--------------------- 192
Query: 251 QVQLVLKM-LEDF------SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE 303
+QLVL+ L D +++V + ++ R L +S +D + L +
Sbjct: 193 NIQLVLRQALPDVWTFPKDREIVVQKV-------SREHRWCLENSPQDPCRKESILLS-- 243
Query: 304 FEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
RGF + +++ ++KPLV HN L D F+H KF PLP + +F ++ FP
Sbjct: 244 ------ARGFSVLFRMLAEARKPLVGHNMLMDLLFLHEKFYRPLPESYEQFKQNVHGLFP 297
Query: 364 QVID 367
++D
Sbjct: 298 VLVD 301
>gi|332023541|gb|EGI63777.1| Poly(A)-specific ribonuclease PARN [Acromyrmex echinatior]
Length = 611
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 138/333 (41%), Gaps = 35/333 (10%)
Query: 38 NESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFA 97
++ LSE+ + I + F+++ + TG P FDTP Y K + + F ++QF
Sbjct: 49 HDVLSELDSVIKDATFLSIDGEFTGLIVGP--DGGQFDTPAQYYSKIRAGSMNFLLMQFG 106
Query: 98 ICPFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
+ F + K YNF++FP+ + + F CQ+S L +A + FDFN
Sbjct: 107 LSVFTYNSDTHKYSQRSYNFYVFPK-PINRQVTDTRFMCQSSSLIFLANKDFDFNKLFKH 165
Query: 156 GISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDS 215
GI YL+ + E + R+ + + + ++ D IE + SR++++ A
Sbjct: 166 GIPYLTASDEEKLVKRLEEKRKI---KEENYVIPITDTDKPQIEEICSRIENFL-ASDAK 221
Query: 216 DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKG 275
++ + +R++V + + ++ E Q +L +
Sbjct: 222 ELTIDHCNGFMRRLVHQEARIRWPNKIIVENKMENGWQCLL----------------VRR 265
Query: 276 GGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLND 335
GT+ + ++K+ L + K G ++ I S+K +V HN L D
Sbjct: 266 AGTKEEEEERENQKQEKEKL----------EVKEAVGLSNLMKKIVESEKIIVGHNMLLD 315
Query: 336 FTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
I +F LP + EF L FP ++D
Sbjct: 316 LCHIVHQFFTSLPKDYLEFKTLLHGLFPNLLDT 348
>gi|384488069|gb|EIE80249.1| hypothetical protein RO3G_04954 [Rhizopus delemar RA 99-880]
Length = 747
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAIC 99
+LS ++ I D IA+ + +G P + + + Y++ K A ERF ++QF +C
Sbjct: 209 ALSIVEEAIKECDVIAIDTELSG-LHRPLNNKRLYSL-QDRYIEYKEATERFIVIQFGLC 266
Query: 100 PFKLQAS--KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGI 157
FK AS + IA P+NF++FP + F Q + K+ FDFN +Y GI
Sbjct: 267 TFKWDASSGRYIAKPFNFYIFPTSTTGTVQANRIFMTQAQAFDFLVKQSFDFNKWVYQGI 326
Query: 158 SYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT--VFIERVRSRVKHW 208
YL++ +E + + MA D P + V + F++ + +++ W
Sbjct: 327 PYLTKQEEKVYREQGEKRMADDM-------PNIPVDEKEFEFMKAAKQKIEQW 372
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 308 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
++ GFR+VID+IS S+K +V HN L D + +F+ PLP + EF FP +ID
Sbjct: 441 RQAVGFRKVIDMISESKKMVVGHNMLLDICHVIGQFVQPLPDTLAEFKVLTHKLFPNLID 500
Query: 368 VNYL 371
Y+
Sbjct: 501 TKYM 504
>gi|115385711|ref|XP_001209402.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187849|gb|EAU29549.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 582
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 154/377 (40%), Gaps = 37/377 (9%)
Query: 23 NPHHW--PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA 80
+P W P+ TKT F L I +S+ F+++ + +G +P R T +
Sbjct: 38 HPTIWIHPMDITTKT-FASYLPHILRDLSTCAFVSLDFEFSGIAIAPPGRSGGSTTLQER 96
Query: 81 YLKAKFAAERFQILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSY 138
YL+ K AAE++ I+Q I + YNF+L P + ++ + S QT
Sbjct: 97 YLETKAAAEKYNIVQVGLTIAQEDPHTATYTLRAYNFYLSPAIDRRLDL-SRDLCFQTGA 155
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTV----KVRMGNPMAVDHATKSSSSPALSVAD 194
+ + F ++ +G+ YLS +E+ V + R P+ + K + +++
Sbjct: 156 VEFLLDCSFSLDSLYKNGVPYLSREEEAQVWTISQARENRPVRTELDVKDTDYESIA--- 212
Query: 195 TVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F++ VR + W + + L +F +T++ + V
Sbjct: 213 --FLDAVRQLIDEWLASGDSKRPRASYLNIPPPSNPATASRFSKAMPLTLNKFHKSLVHR 270
Query: 255 VLKMLEDFSDVLVPLI----------IPAKGGGTQAVRAVLTS--SDEDKDLLKRELQTF 302
+++++E + +I I A+ G V A++ SD L L++
Sbjct: 271 LIEIIEYDEEREKAVIEQRLKRTKERILAQRGFRWIVEALVGGDLSDLHARLFTDRLESL 330
Query: 303 EFEQNKRVRGFREVIDLISA--------SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 354
+ R+ G + +D SA S+ LV HN D +++ FL PLP + EF
Sbjct: 331 SAQYGGRMPG--QTVDEFSAHLLQRLKDSRPVLVGHNLFTDLIYLYRNFLGPLPETVAEF 388
Query: 355 ICSLRLAFPQVIDVNYL 371
+ FP V+D Y+
Sbjct: 389 QRKVHELFPTVVDTKYM 405
>gi|169619537|ref|XP_001803181.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
gi|111058647|gb|EAT79767.1| hypothetical protein SNOG_12967 [Phaeosphaeria nodorum SN15]
Length = 606
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 140/370 (37%), Gaps = 72/370 (19%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
HIS +DF++ L+ +G S P F T E Y +AK A R+QILQ I
Sbjct: 18 HISEADFVSFDLELSGIPSRLPNKPRSGAGRF-TLEERYAEAKEGANRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A+K + PYN ++ P ++ + Q+ +T + GFD G+ YL
Sbjct: 77 FDYIANKYVLRPYNINISPLISERVDF-EREISLQSGAITFLLGCGFDMAKPFTHGVEYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTE 220
S + +K + + + V F+ RVR + WK ++S
Sbjct: 136 SRQEAEQIKQATADRLENKNPPADMQLKDTDVDSLDFMRRVREAIIKWKAGTSES----L 191
Query: 221 ALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQA 280
A+ T G + I S + +LV +++ LV + G ++
Sbjct: 192 AITT----------HTGLKEQPAIPTISRFEKRLVHQLVRAEYPELVSM------GRSEC 235
Query: 281 VRAV----LTSSDEDKDLLKRELQTFEFEQNKRVRGFREV-------------------- 316
VR + L +D + R +++ EQ R GFR V
Sbjct: 236 VRIINFDPLREADNN-----RRIKSRVKEQVNRQSGFRWVFEALAQGNLDHAEPLYVAGN 290
Query: 317 ---------------IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
++ + Q LV HN D +++ F+ LP + F ++
Sbjct: 291 ITADSHNVRDRYDRAVERLRTRQPVLVGHNMFTDIVYLYRTFVGELPDTLQGFRDAIHKE 350
Query: 362 FPQVIDVNYL 371
FP+++D YL
Sbjct: 351 FPKIVDTKYL 360
>gi|242005773|ref|XP_002423735.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
gi|212506937|gb|EEB10997.1| poly A-specific ribonuclease PARN, putative [Pediculus humanus
corporis]
Length = 550
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 8/145 (5%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG-SFSSPWHRVSTFDTPETAYLKAKFAAE 89
++T+ NF+E LS + + + + F+A+ + TG + + +D + YLK + AE
Sbjct: 2 EVTRKNFDEVLSTLPDVFNKAQFLAIDTEFTGLKVEGANNNNNYYDEFDDLYLKNRLKAE 61
Query: 90 RFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGF 147
F +QF I F ++ K +NF+++P +FTCQ+ + +AK GF
Sbjct: 62 TFMAIQFGIVAFFYDEKSKKYTHQGFNFYIYPSTH-----SDVNFTCQSKSIEFLAKNGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRM 172
DFNT GI YL E++ + + R+
Sbjct: 117 DFNTLFLHGIPYLKESEMAKLLDRL 141
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI L+ S+K ++ H L D F +FL+PLP + +EF L FP++ID Y+
Sbjct: 252 GFTRVIKLMIDSKKLIIGHYLLLDILFTIKQFLSPLPNSYSEFKELLHFLFPKIIDTKYM 311
>gi|344249632|gb|EGW05736.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 433
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 77/138 (55%), Gaps = 8/138 (5%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I +DF+ + ++ TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIIDEADFVGLDIEFTGLRSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++K +A+ NF LFP G+ F+ Q S + + + GFD+N
Sbjct: 68 QIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFLNQYGFDYNK 124
Query: 152 CIYDGISYLSEAQESTVK 169
+ +GI Y++E QE ++
Sbjct: 125 FLKNGIPYMNEEQEKKIR 142
>gi|428184515|gb|EKX53370.1| hypothetical protein GUITHDRAFT_101074 [Guillardia theta CCMP2712]
Length = 479
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 132/310 (42%), Gaps = 53/310 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLK-AKFAAE- 89
+T NF E L EIK I DF+A+ + TG +P V T + K A AE
Sbjct: 3 VTTENFEEVLREIKPLIDECDFLAIDCEFTGLDEAPATAVGTLQSVGAGMTKYAGMTAEE 62
Query: 90 ----RFQILQ------FAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTS 137
R++ ++ IC F A K IA PYNF+ FPR E K G+ F CQ
Sbjct: 63 ELQSRYEKIKASTTFLVGICVFTWNAQKRSFIATPYNFYTFPR-EFK-GL-DRRFLCQAK 119
Query: 138 YLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVF 197
++ ++ DFN I GISYL++ +E V+ +S +T F
Sbjct: 120 CMSFLSSNCMDFNKLIKSGISYLNKQEEEFVR------------------RGISSKETEF 161
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
+ +R+ + + T S I S R++++ + S T D C +++
Sbjct: 162 VATIRATIAEFLADETRS-ILMLPQCDSYRRMLIHRDL-----SETFDDCFKKE------ 209
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI 317
++ V + K + ++ T+ + + + Q E +Q + GFR VI
Sbjct: 210 ------NITVEREVSIKLHKNERTSSLGTTKAKIMESISSLAQKVEEKQIQAAVGFRHVI 263
Query: 318 DLISASQKPL 327
D ISAS+K L
Sbjct: 264 DHISASKKGL 273
>gi|425777876|gb|EKV16031.1| CAF1 family ribonuclease, putative [Penicillium digitatum Pd1]
gi|425780003|gb|EKV18026.1| CAF1 family ribonuclease, putative [Penicillium digitatum PHI26]
Length = 553
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 166/404 (41%), Gaps = 65/404 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T F + L I N IS+S F+AV + +G P S T + Y++AK AAER+
Sbjct: 3 VTAVTFPDCLPSILNDISTSCFVAVDFELSGVVFKPNTPQSRPQTVQERYVEAKAAAERY 62
Query: 92 QILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ + C + + PYN +L P + +M + + +T + + + F
Sbjct: 63 QILQVGLTTCHEDKENATYTLKPYNINLSPIAQHEMDV-NRDWTFGSRSMEFLLANHFSI 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-KSSSSPALSVADTV--------FIER 200
+ G+ YLS E +A+ AT K S A+ VAD F+E
Sbjct: 122 DHMCTFGVRYLSREDEK---------LAIRRATEKYHSRNAVQVADIKKDDHESLEFLEA 172
Query: 201 VRSRV----------KHWKNACTDSDIK-----TEALVTSLRKIVLGGEQFGSRPSMTI- 244
VR RV + W N S ++ +++++K ++ P++T
Sbjct: 173 VRVRVNEWLEQGEKRREWLNIPPPSSMQLIPGSIPTGLSNMQKWLVHHLISDEYPNLTSR 232
Query: 245 -----------DVCSER---QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDE 290
D C+E+ + +L +KM + I A GG+ +D
Sbjct: 233 GASTFVQIEFRDPCNEQYTFETKLKVKMKRVRKQIGFRWIAEALVGGSLEE----LETDA 288
Query: 291 DKDLLKR-ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPP 349
L+K E TF +Q +V + + ++ LV HN D F + FL PLP
Sbjct: 289 FHPLMKIIEQPTFGVQQLSD-----KVKNRLQENRPVLVGHNMFCDLLFFYRCFLGPLPN 343
Query: 350 NMNEFICSLRLAFPQVIDVNYL-LKDIG---PVKKMTNISATIA 389
+ EF + FP + D Y+ D G P+ + ++ T+A
Sbjct: 344 TLVEFQTVIHDLFPMLADTKYMATHDCGSLNPMSSLEELNTTLA 387
>gi|403373024|gb|EJY86423.1| hypothetical protein OXYTRI_13677 [Oxytricha trifallax]
Length = 681
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/414 (20%), Positives = 172/414 (41%), Gaps = 62/414 (14%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
IT+ NF + L I ++ +DFIA+ + +G + + DT Y K K + +F
Sbjct: 3 ITRYNFRQQLPGILKNLQEADFIAIDFEFSGLLQNQQNANQASDTIAQRYWKNKESVRKF 62
Query: 92 QILQFAICPFKL---QASKVIAYPYNFHLFP---RDE----------LKMGMP---SYSF 132
+Q IC FK + +PYN ++ P RDE L G+ ++F
Sbjct: 63 MPIQMGICAFKYTHDSKKTLTCFPYNLNIMPSSLRDEKTVLSEGDGSLGTGVQVSNQHNF 122
Query: 133 TCQTSYLTAMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPAL 190
+ + + + +DFN Y+ + YLS + Q+ +++ + S
Sbjct: 123 YVEQTAYQFLQQYKYDFNKLFYESVGYLSYQDYQQYLDDIKLKQYQLALEEQQFDSPECT 182
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTE-----ALVTSLRKIVLGGEQFGSRPSM--- 242
+ +++ F+ +++ ++ D++T+ L + K L + P M
Sbjct: 183 TYSNSHFL-NLQTCLETVGRLIPKEDLETDPRNELKLDITFAKFQLFHSLLRNIPKMFPK 241
Query: 243 -TID---VCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVL--TSSDEDKDLLK 296
+D + ++Q + +K+ ++L I P Q + +L +++E +++
Sbjct: 242 DKLDYELIVDDQQGDMYIKVKVTTDEILRKSIKPF-TSNQQEFKEILEIITNEEKYEIIL 300
Query: 297 RELQTFEFEQNKRVRGFREVID-----------------LISASQKPLVAHNSLNDFTFI 339
+ Q F+ E +V ++V D I+A QKPL+ N + D +
Sbjct: 301 KNPQDFQIESLDKV--VQKVFDSIKSVAENSLGASIIPLFIAALQKPLIFQNGMLDLLHL 358
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM------TNISAT 387
+ KF LP ++ EF ++ + +P + D L+ + ++ N+SAT
Sbjct: 359 YDKFYQSLPDDILEFRSNVSVLYPHIYDNKTLMNNFSDIEATMRNNNGMNLSAT 412
>gi|170066704|ref|XP_001868194.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
gi|167862920|gb|EDS26303.1| poly(A)-specific ribonuclease [Culex quinquefasciatus]
Length = 539
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 117/280 (41%), Gaps = 32/280 (11%)
Query: 99 CPFKLQ-ASKVIAYP-YNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
C F++ S ++Y YNF+ FP+ + + F CQ + +A GFDFN +G
Sbjct: 36 CRFRVDPESGAVSYKCYNFYCFPKGRVHV------FACQGESMRFLADHGFDFNKLFREG 89
Query: 157 ISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
+SY EA E M +D + A A+ V T+
Sbjct: 90 LSYCGEADEER--------MRMDLKERQEQRAAALEAEEGEEANGNDAVNMVPVPATEEK 141
Query: 217 IKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-----DFSDVLVPLII 271
+ E + + L E+ TI C+ Q +LV +M+E S V L
Sbjct: 142 LMAE--IEERIGVFLASEE----KDFTITNCNGFQRKLVYQMIEAKFRKQISTSSVELEN 195
Query: 272 PAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHN 331
KG + R + ++D+ L + ++ + V G V+ +S ++K +V HN
Sbjct: 196 KHKGILVERKR----TKEQDRKLEQEKVAQENVDLESAV-GLSLVLQELSKTRKLIVGHN 250
Query: 332 SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
L D F+ +F PLP N +F ++R FP ++D YL
Sbjct: 251 MLLDLMFVIRQFFRPLPYNFQDFKKTVRELFPLLLDTKYL 290
>gi|19112846|ref|NP_596054.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676190|sp|O94386.1|YGS9_SCHPO RecName: Full=Uncharacterized protein C29A10.09c
gi|4007797|emb|CAA22437.1| CAF1 family ribonuclease (predicted) [Schizosaccharomyces pombe]
Length = 427
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 149/345 (43%), Gaps = 30/345 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I NF E+L E++ H+ S+ ++++ + +G ++ +T + Y + ++ R
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRD--FNLNNKNTLQDRYELLRKSSIR 59
Query: 91 FQILQFAICPFKLQAS-KVIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ILQ I LQ + K P N ++ P +DEL + F + S + + ++GF
Sbjct: 60 YTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKR---DFCSEASSIKFLIQQGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN + +G+ YLS +E + ++ + +T +S L D + R+++K+
Sbjct: 117 DFNKQLTEGVPYLSRIEERNLIDKVN-----ERSTDDLTSSILDACDEEILVDARNQIKN 171
Query: 208 WKNA-CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W ++ + S K + TS R I + T+ +R V K +E+
Sbjct: 172 WLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIEN----- 226
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
TQ + + S+ +D+ +L K+ G R + D I +K
Sbjct: 227 ---------STTQC--SATSKSELKEDIASDQLILNNLNLIKQNVGLRHLWDYILKKKKS 275
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+V HN + D ++ S F +P + EF +F + D L
Sbjct: 276 VVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSIYDTKLL 320
>gi|345802287|ref|XP_003434899.1| PREDICTED: poly(A)-specific ribonuclease PARN [Canis lupus
familiaris]
Length = 592
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 81/389 (20%), Positives = 152/389 (39%), Gaps = 92/389 (23%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYEAIKEADFFAIDGEFSGISDGPSVTALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER P F CQ+S + +A +GFD
Sbjct: 52 ER-----------------------------------SSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL+ +E ++ ++ A+ + + ++S +++ + FI+
Sbjct: 77 FNKVFRNGIPYLNHEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V ++++ + ++ E RK++ + + +D + +
Sbjct: 137 QVVEKIENLLQSEESKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKLAKEQEELNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQP 287
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 288 FKDIIN-NTSLAELEKRLKETPFNPPKVE 315
>gi|307105317|gb|EFN53567.1| hypothetical protein CHLNCDRAFT_136728 [Chlorella variabilis]
Length = 557
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 123/317 (38%), Gaps = 58/317 (18%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMP 128
R S D E Y + ++ F I QF + F + A YNFHLFPR +
Sbjct: 9 QRGSYLDDMEDRYREMLASSRAFVINQFGLSAFVWEDGAYRARTYNFHLFPRPSEGI--- 65
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
F CQ S + +A GFDFN IYDGI Y+ V +R +VD + S
Sbjct: 66 DKRFVCQASSIDFLASCGFDFNKSIYDGIGYM------PVALRDARLASVDRPPRERSEV 119
Query: 189 ALSVA-DTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIV----LGGEQFG-SRPSM 242
+ A D F++ + V W D ++ A V S ++++ L QFG + P
Sbjct: 120 LVRKAEDVAFVKDTVASVAEWLQG-EDLELVLPA-VNSYQRLLQYQELRRPQFGVADPPG 177
Query: 243 TIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF 302
V +E L++ T+A E + +
Sbjct: 178 FYRVAAEEGNGFQLRL-------------------TRAAPG--------------EAEAW 204
Query: 303 EFEQ-NKRVR------GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
E EQ KRV GF V++ + S KP V HN D ++ + LP + E+
Sbjct: 205 EAEQRQKRVEAIHTAAGFAAVMEAMRDSGKPAVGHNLAFDLSYSLHSYAQELPGSWAEYK 264
Query: 356 CSLRLAFP-QVIDVNYL 371
+ FP V D +L
Sbjct: 265 QLVGRWFPGGVYDTKFL 281
>gi|212529996|ref|XP_002145155.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|212529998|ref|XP_002145156.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074553|gb|EEA28640.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
gi|210074554|gb|EEA28641.1| CAF1 family ribonuclease, putative [Talaromyces marneffei ATCC
18224]
Length = 561
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 150/404 (37%), Gaps = 72/404 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T + I IS F+A+ + +G P ++ S T + Y + K AA +
Sbjct: 9 VTGQTWTYHFPHILQDISECTFVALDFEFSGI---PTYQGSRRQTLQERYAEVKEAAGTY 65
Query: 92 QILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ + K A PYN HL P + + + +F +S + + K GFD
Sbjct: 66 QILQVGLAIVKEDAIAGTYTVKPYNIHLSPLIDSTLRI-DRTFGFSSSAVQFLLKSGFDL 124
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWK 209
N +G+ YLS +E V + H S S + A V +R R V
Sbjct: 125 NAPFQEGVHYLSTKEEKKV-------LEDAHQHNSGRSETGTTAQMVLSKRDRESVAFL- 176
Query: 210 NACTDSDIKTEALVTSLRKIVLG-----GEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
A DI+ V R+ L RP+ T + Q +LV +++E
Sbjct: 177 -ADVRKDIEAWLSVGEGRREYLNVPSRDATSRNGRPATT--SLNRFQKRLVHQLVETEYP 233
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISA-- 322
L + P +R ++ E +D ++RE ++ +RGFR VI+ ++
Sbjct: 234 SLTSIGCP------DYIR-IVKYDKEREDRIRREKLNRVEKRLLELRGFRWVIEALTGGD 286
Query: 323 -------------------------------------SQKPLVAHNSLNDFTFIHSKFLA 345
+ PLV HN D ++ F
Sbjct: 287 LSQLTPQAFHPLVGVVEEEEDAAAYWKRTIDALKSKNGRIPLVGHNLFMDVVYLWQCFYG 346
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNIS 385
LP + EF L FP +ID Y+ D+ PV + +I+
Sbjct: 347 YLPDQVEEFARLLHEKFPMLIDTKYIFTHDCGDMNPVASLDDIA 390
>gi|384490758|gb|EIE81980.1| hypothetical protein RO3G_06685 [Rhizopus delemar RA 99-880]
Length = 622
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 128/325 (39%), Gaps = 42/325 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++ K++F + L IK + +DFI+V + TG + P ++ D Y K K +
Sbjct: 2 EVLKSDFEKILPVIKEALLEADFISVDAEFTG-LTPPNIQMFQTDDLTQRYNKIKSCVQE 60
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F I+Q+ +C FK + IA P+NF++F D + FT S L + FD
Sbjct: 61 FTIIQYGVCAFKRDKETGDFIAKPFNFYIFGNDSTDI-HSRRVFTSTASSLAFLRSNKFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN I +GI + + +E + ++ T S +L+ F++ R+ + W
Sbjct: 120 FNKLIDEGIPFYNFTEEGSFNSTQSGTSMLNRRTYIKES-SLTTNGKNFLDNARTAIATW 178
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
T+ + + +K++ Q VL+ + V
Sbjct: 179 LQGNTEKPLVVQTNSHFYKKLI---------------------TQEVLEKHNGYVQV--- 214
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLV 328
P Q VR L + E + E + + FR VI+ I ++ P+V
Sbjct: 215 --APRDSKHVQLVR-----------LKEEEKRQREAKVSSPTLNFRAVIEAIKDAKCPVV 261
Query: 329 AHNSLNDFTFIHSKFLAPLPPNMNE 353
AHN D +F LP + E
Sbjct: 262 AHNGALDIFHTVDQFWQYLPETIEE 286
>gi|189207410|ref|XP_001940039.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976132|gb|EDU42758.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 634
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/392 (22%), Positives = 140/392 (35%), Gaps = 81/392 (20%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +F L + +IS +DF++ L+ +G R S T E Y + K A
Sbjct: 3 VDAASFPHHLLGLMVNISEADFVSFDLELSGIPSRIQDKPARGSGRLTLEERYAETKMGA 62
Query: 89 ERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+R+QILQ I F A K + PYN + P + ++ QT T + G
Sbjct: 63 DRYQILQVGITCARFDYIADKYVLRPYNISISPLLDERLDF-EREVRFQTGACTFLLNNG 121
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERV 201
FD G+ YLS + K MA D + P L V F+ R+
Sbjct: 122 FDLGAPFAKGVQYLSREEAERAKQ-----MAWDRLDNKNPIPDLQLKEEDVESLDFMRRI 176
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV--QLVLKML 259
R +K WK + +L V +P+M + E+++ QLV
Sbjct: 177 REAIKTWKTS------------KALHLDVTTHTGLPDKPAMPVITRFEKRLVHQLVRAEF 224
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV--- 316
+ + G ++ VR V + D ++R ++ E R GFR V
Sbjct: 225 PELVTI----------GRSECVRIVDLDPVREADNMRR-IKNRVRESIVRQTGFRWVFEA 273
Query: 317 -------------------------------------IDLISASQKPLVAHNSLNDFTFI 339
++ + Q LV HN D ++
Sbjct: 274 LVKGGAVDRADLLYVARTTGMPMTADMYAIRDRYDRAVERLKTKQPVLVGHNMFTDIVYL 333
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ F+ LP + F ++ FP++ID YL
Sbjct: 334 YRTFVGQLPDTLQGFQDAIHGLFPKIIDTKYL 365
>gi|325185583|emb|CCA20066.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 656
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 95/384 (24%), Positives = 158/384 (41%), Gaps = 60/384 (15%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+++IT+ +F L I+ I++S FIA+ + G S P R DT E Y A
Sbjct: 7 VQEITQKDFLSQLLVIQKAITNSAFIAIDTE-FGGISFPGERAKWMDTIEERYQLHAKTA 65
Query: 89 ERFQILQFAICPF---------KLQASKVIAYPYNFHLFPRDEL--------------KM 125
+ ++QF + F + +K F +F R E K+
Sbjct: 66 RTYPLMQFGLSCFIPCYTENETPKRFTKYQVLTMQFPIFARYEKASHSVSTTKRSKNGKV 125
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
P +F Q + + + GFDFN I +GISY+S + + VK+ +G VD T S
Sbjct: 126 VSPDRNFMLQAMCIQYIHEHGFDFNDWIENGISYISSS--AMVKL-LGENDVVD--TPQS 180
Query: 186 SSPALSVADTVFIERVRSR-VKHWKNACTDSDI-------------KTEALVTSLRKIV- 230
+ AL F++++ + +K + T + K + T L+ +
Sbjct: 181 ALVALDRHTEAFLDKMDALIIKLREQLATKEQVDPSESESESDEEQKVSEIKTFLKNPMD 240
Query: 231 --LGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK---GGGTQA----- 280
G E +G +T + R L + + + D ++ L + G + A
Sbjct: 241 DSGGIEAYGMVACLTPPLGWYRSRLLTHHIEKTYGDTVLLLECVSDNETGKSSHASRFKE 300
Query: 281 --VRAVLTSSDEDKDLLKRELQTFEFE----QNKRVRGFREVIDLISASQKPLVAHNSLN 334
+R +LT+S++ K + Q+ E + N GF ++D I S P+V HN L
Sbjct: 301 IRLRIILTTSNKVKIRVVSAHQSIENDLIEAHNLERIGFTTIMDWILESNTPIVGHNLLL 360
Query: 335 DFTFIHSKFLAPLPPNMNEFICSL 358
D + + KF PLP EF SL
Sbjct: 361 DLLYCYEKFYQPLPNTCAEFSASL 384
>gi|302835828|ref|XP_002949475.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
gi|300265302|gb|EFJ49494.1| hypothetical protein VOLCADRAFT_120753 [Volvox carteri f.
nagariensis]
Length = 570
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+ + NF + L +++ I + F+A+ + TG F D E Y + +A+ F
Sbjct: 49 VNRHNFKDVLPIMRSAIHEATFVAIDAEFTGLFPEGVSE-DPLDDYEERYKRLLASADNF 107
Query: 92 QILQFAICPFKLQASKVIAY-------PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
I QF + FK A+ A +N ++FPR + K G F CQ+S L +A+
Sbjct: 108 AICQFGLSAFKWHAAPGAARGGYWEAKTFNAYIFPRPDDKTGW-DKRFLCQSSSLAYLAE 166
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
+GFDFN I DGI ++ A + + ++ P A+ +E R+R
Sbjct: 167 QGFDFNKMIRDGIGFIPLAARDAKLRSLREELDKTQRSREVRGP----AEEALVEATRAR 222
Query: 205 VKHW 208
W
Sbjct: 223 ALSW 226
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
GF +V+D++ + +PLV HN+ D + S+F LP N + L+ AFP
Sbjct: 380 GFSQVLDVLRDAGRPLVGHNASLDLAYTLSQFNGVLPRNWRAYKALLQRAFP 431
>gi|344292090|ref|XP_003417761.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Loxodonta
africana]
Length = 592
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/389 (20%), Positives = 150/389 (38%), Gaps = 92/389 (23%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ ++ A+ + + ++S + V + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVMVPEEQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + I+ + +
Sbjct: 137 QVVEKIEDLLQSDENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHIETLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTF--EFEQNKRVRGFREVI 317
R ++ S ++++ +RE Q E E GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKHAKELEGLNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP ++NEF FP+++D L+ P
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQP 287
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 288 FKDIIN-NTSLAELEKRLKETPFNPPKVE 315
>gi|354468613|ref|XP_003496747.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Cricetulus
griseus]
Length = 590
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 80/381 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K+
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKSS--- 58
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
P F CQ+S + +A +GFD
Sbjct: 59 ---------------------------------------PDVKFVCQSSSIDFLASQGFD 79
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN GI YL++ +E ++ + + ++++ + AL+ E R +
Sbjct: 80 FNKVFCSGIPYLNQEEERHLREQFD-----EKRSQANGAGALAKCPVTIPEDQRKFI--- 131
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ ++ + + E + S+ ++ C+ Q +L+ + L P
Sbjct: 132 -----------DQVIEKIENFLQNKE----KKSLDLEPCTGFQRKLIYQTL----SWKFP 172
Query: 269 LIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQK 325
I + T+ R ++ S ++++ +RE + + EQ + GF VI I+ S+K
Sbjct: 173 KGIHVETLETEKKERHIVISKVDEEERKRREQEKYAKEQEELNDAVGFSRVIHAIANSRK 232
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
+V HN L D +F PLP ++NEF FP+++D L+ P K + N +
Sbjct: 233 LVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMTICVFPRLLDTK-LMASTQPFKDIIN-N 290
Query: 386 ATIAYLKNRF----FAPIEME 402
++A L+ R F P ++E
Sbjct: 291 TSLAELEKRLKETPFDPPKVE 311
>gi|327300148|ref|XP_003234767.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
gi|326463661|gb|EGD89114.1| hypothetical protein TERG_05358 [Trichophyton rubrum CBS 118892]
Length = 560
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 110/453 (24%), Positives = 190/453 (41%), Gaps = 53/453 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ S+ Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDSQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLM 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHA--TKSSSSPALSVADTV----- 196
GF + DG+ Y+S +E A+D A K SS +L DT+
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQD---------AMDRARKDKDKSSRSLINFDTLAPDHA 170
Query: 197 -FIERVRSRVKHW--KNACTDS--DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER- 250
FI +VR ++ W K A ++ +I A +T+ K+ L + + R I V SE
Sbjct: 171 QFIRQVRHSIREWIEKPAPKEAYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYP 229
Query: 251 -----------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKD 293
Q+ KM E+ F + I + G + + A++ S S D
Sbjct: 230 GYVSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIAGQKGFSWVIEAMMGSELSKLDLR 289
Query: 294 LLKRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMN 352
LL R F + ++ E + S P LV HN D + F+ LP +
Sbjct: 290 LLWRPDGIFTAAEGSKLTKESEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVE 349
Query: 353 EFICSLRLAFPQVIDVNYLLKDIGPVKKMTN-ISATIAYLKNRFFAPIEMEIPNQANENE 411
+F ++ FP VID Y+ G ++ ++ +S + L +R E + +
Sbjct: 350 DFQQTINELFPLVIDTKYMATIGGVLRDASSALSTLMENLGSRAVPKFETHPDHSSYTVS 409
Query: 412 GKIH--GHNVVKICQLFGKLCSILKITPDAIES 442
+H G++ + Q+F KL L T + E+
Sbjct: 410 TPVHEAGYDSLMTAQIFLKLAVKLYETSSSREA 442
>gi|194382480|dbj|BAG64410.1| unnamed protein product [Homo sapiens]
Length = 207
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 95/211 (45%), Gaps = 27/211 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK Y Y P F CQ+S + +A +GFD
Sbjct: 62 MDFLLFQFGLCTFK--------YDYT--------DSKSSPDVKFVCQSSSIDFLASQGFD 105
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S ++V + FI+
Sbjct: 106 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTVPEDQKKFID 165
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIV 230
+V +++ + + ++ E RK++
Sbjct: 166 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLI 196
>gi|326473493|gb|EGD97502.1| CAF1 family ribonuclease [Trichophyton tonsurans CBS 112818]
Length = 585
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 167/394 (42%), Gaps = 46/394 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ + Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDDQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLK 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L DT+ F
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHTDKDKLSRSLINFDTLAPDHAQF 172
Query: 198 IERVRSRVKHW--KNACTDS--DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER--- 250
I++VR ++ W K A D+ +I A +T+ K+ L + + R I V SE
Sbjct: 173 IQQVRHSIREWIEKPAPKDTYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYPGY 231
Query: 251 ---------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLL 295
Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 232 VSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSELSKLDLRLL 291
Query: 296 KRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEF 354
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 292 WRPDGMFTAAEGSKLTKECEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDF 351
Query: 355 ICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 388
++ FP VID Y+ G ++ ++ +T+
Sbjct: 352 QQAINELFPLVIDTKYMATTGGVLRDASSALSTL 385
>gi|326480283|gb|EGE04293.1| CAF1 family ribonuclease [Trichophyton equinum CBS 127.97]
Length = 585
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 96/394 (24%), Positives = 167/394 (42%), Gaps = 46/394 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASAYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ + Y PYN L P + ++G+ ++ Q+S L +
Sbjct: 62 AAEEYQILQVGLT-LVVEDDQNDTYSLRPYNIPLSPILDPRLGV-ERKWSFQSSALAFLK 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L DT+ F
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHTDKDKLSRSLINFDTLAPDHAQF 172
Query: 198 IERVRSRVKHW--KNACTDS--DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER--- 250
I++VR ++ W K A D+ +I A +T+ K+ L + + R I V SE
Sbjct: 173 IQQVRHSIREWIEKPAPKDTYLNIPKPAGMTAAYKLPLELDNYQKRLVHQI-VQSEYPGY 231
Query: 251 ---------QVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLL 295
Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 232 VSIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSELSKLDLRLL 291
Query: 296 KRELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEF 354
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 292 WRPDGMFTAAEGSKLTKECEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDF 351
Query: 355 ICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 388
++ FP VID Y+ G ++ ++ +T+
Sbjct: 352 QQAINELFPLVIDTKYMATTGGVLRDASSALSTL 385
>gi|396479569|ref|XP_003840786.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
gi|312217359|emb|CBX97307.1| similar to CAF1 family ribonuclease [Leptosphaeria maculans JN3]
Length = 630
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 152/374 (40%), Gaps = 45/374 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKF 86
++ +F L+ + HIS +DF+A L+ +G S P + T E Y + K
Sbjct: 2 EVDAESFPHHLTGLFIHISEADFVAFDLELSGIPSRLPDKPARGRGRY-TLEERYAETKH 60
Query: 87 AAERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
A+R+QILQ + F A+K + PYN ++ P + ++ Q+ + +
Sbjct: 61 GADRYQILQVGLTCARFDYIANKYVLRPYNINICPLLDERLDF-EREIRFQSGACSFLLS 119
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV----ADTV-FIE 199
GF+ G+ YLS + + + MA D K + + + D++ F+
Sbjct: 120 HGFNLGAPFASGVQYLSRQEAARARQ-----MAWDRIEKKNPVEDMQLKEEHVDSLDFVR 174
Query: 200 RVRSRVKHWKNACTDS-DIKT----------EALVTSLRKIV--LGGEQFGSRPSM---- 242
RVR + WK +D ++ T +A+ +++V L +F + S+
Sbjct: 175 RVREAITQWKTTNSDCLEVTTHTGLPKAPHVQAISRFEKRLVHQLVRAEFPDQVSIGRHD 234
Query: 243 ---TIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDK--DLLKR 297
ID ER+ V +M + ++ + G A++ D D+ L
Sbjct: 235 CIRIIDHDVEREADNVRRMKSRVKEQII-----RQTGFRWIFEALVKGGDIDRAEPLYLS 289
Query: 298 ELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICS 357
+ + + + ++ + Q LV HN D +++ F+ LP + F
Sbjct: 290 RTSSLTADVSGLKDRYDRAVERLKTRQPVLVGHNMFTDIVYLYRTFVGELPDTLQGFREV 349
Query: 358 LRLAFPQVIDVNYL 371
+ FP+++D YL
Sbjct: 350 IHELFPKIVDTKYL 363
>gi|154290929|ref|XP_001546053.1| hypothetical protein BC1G_15528 [Botryotinia fuckeliana B05.10]
Length = 406
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 145/387 (37%), Gaps = 55/387 (14%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
++ K N+ L I I+++ F++ L+ +G + P H R P + Y +
Sbjct: 2 EVHKENWQRLLLPILKDIANATFVSFDLEMSGITTRPKHTSQERTHDIGKPSLQQQYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFP---RDELKMGMPSYSFTCQTSYL 139
K AAE FQ+LQ I + K +A PYN +L P D + +SF+ +S
Sbjct: 62 KEAAETFQVLQLGITCVEEDREKEYYLAKPYNINLSPLLLYDRVFDLDRKFSFS--SSAT 119
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIE 199
+ GFD G+ YLSE +E + R + + A S V F
Sbjct: 120 NFLQSNGFDIGAVFTMGVPYLSEQEEVEARERYDQRIERNAAIPSIVFDPSDVGTLEFYR 179
Query: 200 RVRSRVKHW------KNACTDSDIKTEALVTSLRKIV--LGGEQFGSRPSMTIDVCSERQ 251
R RS + W K + D L R++V L +F S Q
Sbjct: 180 RARSSITEWIEAKEPKMTFVNVDNPKGPLNGFQRRLVHQLVRSEFPQCRCFARSDGSFMQ 239
Query: 252 VQLV------------------LKMLEDFSDVLVP-----LIIPAKGGGTQAVRAVLTSS 288
V+++ ++ L+ F+ + I A GG + S
Sbjct: 240 VEMIDHDREARACSSNFFNPFKIEQLKKFNQRIATQSGARFIFEALCGGDLIGIDPMWSY 299
Query: 289 DEDK----DLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFL 344
D+ D + T E E K ++ +E Q +V HN D F++ F+
Sbjct: 300 KHDENAQPDSVDSSHATLEAELTKVIKKLKE-------KQHVIVGHNLFTDLCFLYKTFI 352
Query: 345 APLPPNMNEFICSLRLAFPQVIDVNYL 371
LP + +F + FP VID YL
Sbjct: 353 GDLPAGVGDFQSQIHSLFPFVIDTKYL 379
>gi|332845320|ref|XP_003315023.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Pan
troglodytes]
gi|397525569|ref|XP_003832734.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Pan
paniscus]
Length = 593
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/389 (19%), Positives = 151/389 (38%), Gaps = 92/389 (23%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 137 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 287
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 288 FKDIIN-NTSLAELEKRLKETPFNPPKVE 315
>gi|351703955|gb|EHB06874.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Heterocephalus glaber]
Length = 466
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTGSFS--SPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F +SL ++ + +DF+ + ++ TG S S ++S FD P YLK + + ++F I
Sbjct: 8 FEQSLPLLQKLLREADFVGLDIEFTGLRSNLSGLQQISLFDLPSDWYLKTRQSIQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
Q + F + +++ IA+ NF LFP G+ F+ Q S + + + GF++N
Sbjct: 68 QIGLSVFSSIEGESNMYIAHSCNFFLFPT---TFGILDTEFSFQASSVQFLNQYGFNYNK 124
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
+ GI Y++E QE +K H+ + + S D I+ V + V W +
Sbjct: 125 FLKKGIPYMNEEQEKKIK----------HSILTGNWKVRSSLDKDQIKVVINEVTRWLDL 174
Query: 212 CTDSDIKT 219
+ D T
Sbjct: 175 AEEGDQMT 182
>gi|339715201|ref|NP_001229921.1| poly(A)-specific ribonuclease PARN isoform 3 [Homo sapiens]
gi|194377130|dbj|BAG63126.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/389 (19%), Positives = 151/389 (38%), Gaps = 92/389 (23%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 137 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 287
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 288 FKDIIN-NTSLAELEKRLKETPFNPPKVE 315
>gi|303275732|ref|XP_003057160.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461512|gb|EEH58805.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 285
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 75 DTPETAYLKAKFAAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS- 131
DTPE + K F +LQ+ +C F ++ + A P+NF LFP +P S
Sbjct: 112 DTPEERFRKVHACVRAFAVLQYGVCTFHFDPRSRRWTARPFNFWLFPDHR---ALPDASA 168
Query: 132 FTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F CQ S L+ +A GFDFN CI +G+ Y+
Sbjct: 169 FGCQASSLSFLANNGFDFNKCIREGVPYV 197
>gi|332240355|ref|XP_003269353.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 3 [Nomascus
leucogenys]
Length = 593
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/389 (19%), Positives = 150/389 (38%), Gaps = 92/389 (23%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S + + + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVPIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 137 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGP 377
I+ S K ++ HN L D +F PLP +++EF FP+++D L+ P
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQP 287
Query: 378 VKKMTNISATIAYLKNRF----FAPIEME 402
K + N + ++A L+ R F P ++E
Sbjct: 288 FKDIIN-NTSLAELEKRLKETPFNPPKVE 315
>gi|451850236|gb|EMD63538.1| hypothetical protein COCSADRAFT_143653 [Cochliobolus sativus
ND90Pr]
Length = 620
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 148/378 (39%), Gaps = 83/378 (21%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
+I+ +DF++ L+ +G S P F T E Y + K A+R+QILQ I
Sbjct: 18 NIAEADFVSFDLELSGIPSRIQDKPPRGPGRF-TMEERYAETKMGADRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A+K + PYN + P + ++ Q+ T + K GFD +G+ YL
Sbjct: 77 FDYIANKYVLRPYNIDISPLLDERIDF-EREIRFQSGACTFLLKNGFDLGLPFANGVQYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRSRVKHWKNACTDS 215
S + K MA D K + P L V F+ RVR + WK +
Sbjct: 136 SRQEADKAKQ-----MACDRLEKKNPVPDLQLKEGDVESLDFMRRVREAINKWKTTTSSG 190
Query: 216 -DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE-DFSDVLVPLIIPA 273
DI T RP I V + + +LV +++ +F D++
Sbjct: 191 LDITTHT-------------GLPERPK--IPVITRFEKRLVHQLVRAEFPDLVT------ 229
Query: 274 KGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI------------DLIS 321
G ++ VR + + + ++R ++ E R GFR + DL+
Sbjct: 230 -MGRSECVRIIQLDPVREAENMQR-MKNRVDESILRQTGFRWIFEALVKGGNLSRTDLLY 287
Query: 322 ASQ---------------------------KPLVAHNSL-NDFTFIHSKFLAPLPPNMNE 353
++ +P++ +++ D +++ F+ LP +N+
Sbjct: 288 VARTTGMAPTADTDDTRTRFDKAMERLKTKQPVLVGHNMFTDIVYLYRTFVGELPDTLND 347
Query: 354 FICSLRLAFPQVIDVNYL 371
F ++ FP++ID YL
Sbjct: 348 FQDAIHELFPKIIDTKYL 365
>gi|255088137|ref|XP_002505991.1| ribonuclease [Micromonas sp. RCC299]
gi|226521262|gb|ACO67249.1| ribonuclease [Micromonas sp. RCC299]
Length = 832
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 129/344 (37%), Gaps = 50/344 (14%)
Query: 31 QITKTNFNESLSEIKNHISSS--DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+T+ NF E+LS ++ I F + + TG +SP DTPE + K
Sbjct: 2 DVTRDNFEEALSALQEAIDDPLFAFWSFDCEFTGLNASPTTGHDLLDTPEERFAKVHACV 61
Query: 89 ERFQILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F +LQ AI F + P+NF P + G+ F+ Q + L + G
Sbjct: 62 RAFTVLQVGVAIFSFDPHTRRWTCRPFNFWTIPDAKAGRGV----FSAQVASLQFLVDCG 117
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FD N C+ GI ++ A+ S R SS D F+ + +V
Sbjct: 118 FDLNKCVARGIPFVPAAERSRAAAREARLAQRPPIIPSSDR------DKAFVANLLIKVA 171
Query: 207 HW-----------KNACTDSDI---KTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQV 252
W + D D+ T + +L +L G+ PS +
Sbjct: 172 EWLSRSDDDGDGDGDGARDEDLCLDPTNGFLRALTYQILEGD-----PSRFGGNKARDDP 226
Query: 253 QLVLKMLEDFSDVLVPLIIPAKGGGTQAV--RAVLTSSDEDKDLLKRELQTFEFEQNKRV 310
+ DF+D P I+ ++ + RA ++D KD +K
Sbjct: 227 GFIASTSCDFADGR-PRIVLSRASREEVATHRAAKEAADRKKDQMKE------------- 272
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEF 354
GF V+ + A +P V HN+L D ++ KFLA L + F
Sbjct: 273 -GFGLVLAKLGACGRPCVGHNALFDCVYVVDKFLAELDGSFEGF 315
>gi|443682487|gb|ELT87068.1| hypothetical protein CAPTEDRAFT_222843 [Capitella teleta]
Length = 590
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 135/360 (37%), Gaps = 87/360 (24%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQ 95
NFNE L I+ I +DF+A+ + TG P S FD+ Y K + A + F Q
Sbjct: 58 NFNEFLPLIEKSIFEADFVAIDCEFTG-LHLPGEGPSLFDSGADRYAKLRRAVQAFMPSQ 116
Query: 96 FAICPF-----KLQASKVI----------------------AYPYNFHLFPRDELKMGMP 128
I F L +K A+ YNF +FP L G
Sbjct: 117 IGISAFVRDKNSLYYAKYCVDLSVSLAYFSPHISPFLARYEAHTYNFFIFP---LSFGPI 173
Query: 129 SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP 188
F+CQ +Y+GIS L+E QE T+ + S
Sbjct: 174 DVQFSCQF----------------VYEGISVLNEEQEKTLSKHL--------RENELFSG 209
Query: 189 ALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCS 248
+ D ++ V +V +W N S ++E T +
Sbjct: 210 LIRDVDESSLQSVCLQVTNWLN---QSPKESEFFFT---------------------IPP 245
Query: 249 ERQVQLVLKML-EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQN 307
E +++K L + FS++ I A+ G R ++DE + + Q E +
Sbjct: 246 ELPEYIIIKELRQRFSNIW----ITAEKGKILVQR---VTTDERIKMEEDSKQAEEKKIT 298
Query: 308 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
K++ GF +V + S+KPL+ HN D F++ K PLP + + L FP + D
Sbjct: 299 KKMLGFTQVFRSLIKSKKPLIGHNCFTDLLFLYEKCYQPLPESYLTYKAKLHTLFPIIYD 358
>gi|195999750|ref|XP_002109743.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
gi|190587867|gb|EDV27909.1| hypothetical protein TRIADDRAFT_52927 [Trichoplax adhaerens]
Length = 511
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 35 TNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
+ NE++ +K+ I+ + F+A+ + TG S F++P Y K + F ++
Sbjct: 21 VDLNEAIDILKSIINKAAFVALDGEFTGINSDESRAFDMFESPAQRYKKISKIVQNFLMI 80
Query: 95 QFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
Q +C F K A+P++F++FP+D+ G F+CQ S + +++ F+FN
Sbjct: 81 QCGLCVFVPNEDKKSFTAFPFSFYIFPQDD-NSGPNKNGFSCQISSIKFLSQHKFNFNKV 139
Query: 153 IYDGISYLSEAQESTVKVRMGNPM 176
DG+ YL+ E+ ++++ M
Sbjct: 140 FNDGMPYLNSIVEAECRMKIEEKM 163
>gi|348584112|ref|XP_003477816.1| PREDICTED: poly(A)-specific ribonuclease PARN-like isoform 2 [Cavia
porcellus]
Length = 591
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 157/390 (40%), Gaps = 94/390 (24%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I + NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRNNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ER P F CQ+S + +A +GFD
Sbjct: 52 ER-----------------------------------SSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALAYVSPNTSKCPVTIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ +++EA T + ++ C+ Q +L+ + L
Sbjct: 137 QVVEKIEDL--------LQSEANKT-----------------LDLEPCTGFQRKLIYQTL 171
Query: 260 EDFSDVLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV 316
P I + T+ R ++ S +++ +RE Q EQ + GF V
Sbjct: 172 ----SWKYPKGIHIETLETEKKERYIVISKVNEEERKRREQQKHAKEQEELNDAVGFSRV 227
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG 376
I I+ S K +V HN L D +F PLP ++ EF FP+++D L+
Sbjct: 228 IHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPVDLKEFKEMTTCVFPRLLDTK-LMASTQ 286
Query: 377 PVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 287 PFKDIIN-NTSLAELEKRLKETPFSPPKVE 315
>gi|156033193|ref|XP_001585433.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980]
gi|154699075|gb|EDN98813.1| hypothetical protein SS1G_13672 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 588
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 147/375 (39%), Gaps = 44/375 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
++ K N+ L I IS++ F++ L+ +G + P H R P + Y +
Sbjct: 2 EVDKDNWKRLLLPILKDISNATFVSFDLEMSGITTRPKHSNQERTHDVGKPSLQQQYEEV 61
Query: 85 KFAAERFQILQFAICPFKLQASKVIAYPYNFHLFP---RDELKMGMPSYSFTCQTSYLTA 141
K AAE FQ+LQ I + + +A PYN +L P D + ++ F+ S
Sbjct: 62 KDAAETFQVLQIGITCVE-EDHYYLAKPYNINLSPLLIYDRVFDLDRNFCFSSSASNF-- 118
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ GFD G+ YLSE +E+ + R + + + S V F R
Sbjct: 119 LQSNGFDIGAVFTKGVPYLSEQEEAEARERYDQRIERNASIPSIIFDPSDVGTLEFYRRA 178
Query: 202 RSRVKHW------KNACTDSDIKTEALVTSLRKIV--LGGEQF----------GSRPSMT 243
RS + W K A + D L R++V L +F GS +
Sbjct: 179 RSTITEWIEAKEPKMASVNVDNPKGPLNGFQRRLVHQLVRSEFPQYRCFARLEGSFMQVE 238
Query: 244 IDVCSERQVQLVLKMLEDFSDVLVP-----LIIPAKGGG--TQAVRAVLTSSDEDKDLLK 296
+ + +R+ + ++ L+ F+ + I A GG T L + DE+
Sbjct: 239 M-IDHDREAKKTIEQLKTFNQRIAQQSGARFIFEALCGGDLTGIDPMWLYTDDENTQPNH 297
Query: 297 RELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFIC 356
+ F Q VI + Q +V HN D F++ F+ LP + +F
Sbjct: 298 HSSRPFLESQ------LAAVIKTLKKKQHVIVGHNLFTDLCFLYKTFIGTLPAGVGDFQS 351
Query: 357 SLRLAFPQVIDVNYL 371
+ FP VID YL
Sbjct: 352 QIHSLFPFVIDTKYL 366
>gi|328717201|ref|XP_001944100.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Acyrthosiphon
pisum]
Length = 534
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/353 (19%), Positives = 142/353 (40%), Gaps = 40/353 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF L I++ I FI++ ++ + F + S FDT E Y K
Sbjct: 3 EITCENFYSELPVIESAIKECAFISLDMEFSKLFDNISKPFSLFDTTEERYNKLHQKVSD 62
Query: 91 FQILQF--AICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+QF AI + + Y+F+ +P+ K QTS + + K FD
Sbjct: 63 ITCIQFGMAIYVYDDKIKTFKTSTYSFYTYPQTFYK---SDSVVNFQTSCVEFLCKHNFD 119
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN + + YL++ +E +K M + D +++ S+ + + +V V W
Sbjct: 120 FNKLFHSRVPYLTDEEELKIKSEMLDEFFFDKYFETNIKFR-SIEEELM--KVLKIVSEW 176
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK--MLEDFSDVL 266
+ +G + + I+ C+E ++++ +L+ +L
Sbjct: 177 YDTA----------------------NYGEQTFLEINGCNEPAYTILMQYYLLKKLKYIL 214
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKREL-QTFEFEQNKRVRGFREVIDLISASQK 325
+ + ++ + ++L + + + + ++ G + ++ LIS +K
Sbjct: 215 I-------DESQLGLNITKIEANTNSEILNKTIHENLKLNLLNKMMGIKYLMKLISKLKK 267
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV 378
P++ HN D + ++F PLP N +F + F + D L K++ +
Sbjct: 268 PIIGHNCALDILILSNQFFTPLPENFKDFQNFVFNNFGPIYDTKLLCKEVKRI 320
>gi|317147888|ref|XP_001822359.2| CAF1 family ribonuclease [Aspergillus oryzae RIB40]
Length = 561
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/472 (20%), Positives = 184/472 (38%), Gaps = 89/472 (18%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
IT F+ L I + ++S F+++ + +G S + P + ST + Y + K +A
Sbjct: 3 ITPKTFHFFLPRILDELASCSFVSIDFEFSGIACSSNGPNSKASTL---QDRYTEVKESA 59
Query: 89 ERFQILQFA--ICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
++++I+Q IC ++ I PYN +L P + ++ + Q+ + + +
Sbjct: 60 DKYRIVQIGLTICHEDTESGTYILKPYNLYLNPIIDRRLEV-GRDMCFQSGVVEFLLENK 118
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT-----VFIERV 201
F N+ DG+ YLS +E+ R A + ++S + V +T F+ V
Sbjct: 119 FCLNSLYSDGVHYLSREEETIAIAR-----AAERYGRTSVRKVIDVKETEHDSLAFLGAV 173
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
R V W EA L +P + V + Q +LV +++E
Sbjct: 174 RYLVDGWLAL-------GEAREAYLNIPPPRRYTASPKPKIMPSVLNNFQKRLVHQLIEV 226
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLIS 321
LV + PA ++ + D +K + ++ + K++ GFR +++ +S
Sbjct: 227 EYPSLVTISRPA------FIQVIDYDEDREKAIQEQRMARARERVWKQI-GFRWIVEALS 279
Query: 322 A---------------------------------------SQKP-LVAHNSLNDFTFIHS 341
+ +P LV HN D +++
Sbjct: 280 GGDLSHLDPFCFGSIMNSSTVVEPQVSLHGFSEKLQQRLRTHRPVLVGHNLFTDVVYLYR 339
Query: 342 KFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIAYLKNRFFA 397
F PLP + EF + FP ++D Y+ I P ++ I+ + ++K +
Sbjct: 340 CFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDCGSITPKSSLSEINDNLLHIKTPKIS 399
Query: 398 PIEMEIPNQANENEGKIH---GHNVVKICQLFGKLCSILK-----ITPDAIE 441
E + N +I G++ + Q+F KL + L+ PD +E
Sbjct: 400 VHE----QHSKYNSQRIDHEAGYDSLLTAQIFIKLSAQLRDGGISKLPDPVE 447
>gi|378729834|gb|EHY56293.1| poly(A)-specific ribonuclease [Exophiala dermatitidis NIH/UT8656]
Length = 667
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P IT F +I +I+ S F+A L+ +G S T + Y + A
Sbjct: 37 PRMNITGAEFEGEAIKIIQNIADSRFVAFDLEFSGVAGRRPAGGSGKLTLQDYYQDLRAA 96
Query: 88 AERFQILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKE 145
A+ +QILQ + Q + +A PYNF L P K + ++ + ++ + +
Sbjct: 97 AQIYQILQVGLTVVAEDTQKGQYVARPYNFDLSPLPATKEQVFRRVWSYNSGAVSFLIRN 156
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
GF+ + I G+ YLS +E V+ ++ + D A + L D+ +E +R +
Sbjct: 157 GFNIDRPILQGVQYLSRQEEEQVRKKL---LEDDQARANIPDMILKEDDSPLVEHIRQSI 213
Query: 206 KHWK 209
K W+
Sbjct: 214 KDWQ 217
>gi|403340574|gb|EJY69575.1| Poly(A)-specific ribonuclease PARN [Oxytricha trifallax]
Length = 927
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
IT+ NF E L I++ I+S+DFIA + +G F H +DT E Y K
Sbjct: 3 ITRENFIELLPLIRHSINSADFIAYDTEFSGLSIGFDDKGHE---YDTVEDRYQKLVHNC 59
Query: 89 ERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
R Q +C F+ + K + P+NF++FP L + Q S + +
Sbjct: 60 SRMNTFQVGLCTFRWIPEKMKYVCRPFNFYVFPDSSL---FEDINIQFQASNIKFLTDNH 116
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD--------HATKSSSSPALSVADTV 196
FDFN GISY ++ V R N ++ + H SS + +++ + V
Sbjct: 117 FDFNKLFTQGISYQRLSKRDEVYRRAMNRVSEEKQHNRFYTHLGDSSQAQLIAIMEQV 174
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 285 LTSSDEDKDLLKRELQT-FEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 343
LT ++ K L ++E + F +E GF V++ + ++KP++ HN + D +++++F
Sbjct: 327 LTEEEKAKLLKQKEFERLFTYEM-----GFSLVVEDLMKAKKPIIGHNMIYDICYLYNQF 381
Query: 344 LAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ LP ++FI FP + D L
Sbjct: 382 IDKLPNEYSDFIKIWNEQFPYIYDTKVL 409
>gi|395860986|ref|XP_003802778.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Otolemur
garnettii]
Length = 588
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 144/370 (38%), Gaps = 76/370 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
ERF P F CQ+S + +A +GFD
Sbjct: 52 ERFS-----------------------------------PDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN ++GI YL++ +E ++ + + A + SP S E + +
Sbjct: 77 FNKVFHNGIPYLNQEEERQLREQYDEKRS--QANGAYVSPNASKCRLTIPEDQKKFI--- 131
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
+ +V + ++ E ++ ++ C+ Q +L+ + L P
Sbjct: 132 -----------DQVVEKIEDLLQSEE----NKNLDLEPCTGFQRKLIYQTL----SWKYP 172
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---GFREVIDLISASQK 325
I + T+ + S D++ KR Q ++ + + GF VI I+ S K
Sbjct: 173 KGIHVETLETEKKEQYIAISKVDEEERKRREQEKHAKEQEELNDAVGFSRVIHAIANSGK 232
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNIS 385
++ HN L D +F PLP ++ +F FP+++D L+ P K + N +
Sbjct: 233 LVIGHNMLLDVMHTVHQFYYPLPADLTDFKKMTTCVFPRLLDTK-LMASTQPFKDIIN-N 290
Query: 386 ATIAYLKNRF 395
++A L+ R
Sbjct: 291 TSLAELEKRL 300
>gi|403332061|gb|EJY65020.1| Poly A-specific ribonuclease PARN, putative [Oxytricha trifallax]
Length = 560
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
EQ + + GF +I L+ QKP+++HN + D F++ KF+ PLP N+++F L PQ
Sbjct: 142 EQQEDLLGFSRIIKLLGDLQKPIISHNGVMDMMFLYEKFIGPLPENVDDFKAKLNGLLPQ 201
Query: 365 VIDVNYLL 372
+ D +++
Sbjct: 202 IFDTKHMI 209
>gi|410960341|ref|XP_003986750.1| PREDICTED: poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Felis catus]
Length = 681
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPF---KLQASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F + +++K +A+ NF LFP
Sbjct: 34 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPT---TF 90
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GFD+N + +GI Y++E QE +K H +
Sbjct: 91 GVLDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIK----------HNILTG 140
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
+ S D I+ V V W + + D T
Sbjct: 141 NWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMT 174
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 310 VRGFREVIDLISASQK--PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
+R + +D + A ++ PLV HN + D +H KF PLP + ++F ++ FP +ID
Sbjct: 394 MRALVQAVDALPAKRRSVPLVGHNMMTDLLHLHEKFFRPLPESYDQFKLNIHNLFPVLID 453
Query: 368 VNYLLKDI 375
+ KDI
Sbjct: 454 TKNVTKDI 461
>gi|302497187|ref|XP_003010594.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
gi|291174137|gb|EFE29954.1| CAF1 family ribonuclease, putative [Arthroderma benhamiae CBS
112371]
Length = 573
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 159/393 (40%), Gaps = 60/393 (15%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF+ L + I F+A+ + +G F+ ST+ + + Y + K
Sbjct: 2 EVTRNNFSRLLPRMLQDIGDCSFVALDFEFSGIFNQKLRPASTYVDGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA--- 143
AAE +QILQ + + YP+ +T +S+ A+A
Sbjct: 62 AAEEYQILQVGLTLVVEDSQNGWRYPF------------------YTLASSFSLALAFLM 103
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV------F 197
GF + DG+ Y+S +E + M H K S +L +T+ F
Sbjct: 104 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHKDKDKLSRSLINLNTLAPGHAQF 156
Query: 198 IERVRSRVKHW--KNACTDS--DIKTEALVTSLRKIVLGGEQFGSR----------PS-M 242
I +VR ++ W K A D+ +I A +T+ K+ L + + R P +
Sbjct: 157 IRQVRHSIREWIEKPAPKDAYLNIPKPAGMTAAYKLPLELDNYQKRLVHQIVQSEYPGYV 216
Query: 243 TIDVCSERQVQLVLKMLED-FSDVLVPLI---IPAKGGGTQAVRAVLTS--SDEDKDLLK 296
+I S Q+ KM E+ F + I ++ G + + A++ S S D LL
Sbjct: 217 SIGKKSFIQILPYDKMRENVFLQKKLQRTRCNIASQKGFSWVIEALMGSDLSKLDLRLLW 276
Query: 297 RELQTFEFEQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
R F + ++ E + S P LV HN D + F+ LP + +F
Sbjct: 277 RPDGMFTAAEGSKLTKESEALREKLRSGPPVLVGHNLFTDLVNFYKCFIGDLPSRVEDFQ 336
Query: 356 CSLRLAFPQVIDVNYLLKDIGPVKKMTNISATI 388
++ FP VID Y+ G ++ ++ +T+
Sbjct: 337 QAINELFPLVIDTKYMATTGGVLRDASSALSTL 369
>gi|296816132|ref|XP_002848403.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238841428|gb|EEQ31090.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 545
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 177/451 (39%), Gaps = 92/451 (20%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++TK NF + L +I I F+A+ + +G F+ S++ + + Y + K
Sbjct: 2 EVTKRNFTQLLPQILQAIGDCSFVALDFEFSGIFNQKLRPASSYADGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASK--VIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
AAE +QILQ I + + PYN L P + ++ + ++ Q S
Sbjct: 62 AAEEYQILQVGITLVTEDSENGTYLLRPYNIPLSPLLDPRLEV-ERKWSFQNS------- 113
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRMGN----PMAVDHATKSSSSPALSVADTVFI 198
DG+ Y+S E +++ V+VR N P+ +D L+ F+
Sbjct: 114 ----------DGVPYISRKEEEDAMVRVRQHNSAISPINLD---------TLAADQAEFL 154
Query: 199 ERVRSRVKHW--KNACTDS--DIKTEALVTSLRKIVLGGEQFGSR----------PSMT- 243
+VR VK W K+ D +I A +T K+ L + + R P
Sbjct: 155 RQVRQDVKEWIEKDGPKDGYLNIPKPAGMTDAHKLPLELDNYQKRLVHQIINSEYPGYVS 214
Query: 244 ---------IDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTS--SDEDK 292
I +ER+ ++ K L+ +V I ++ G + + A+ + D
Sbjct: 215 VGKKSFVQIIPYDAERENKVTEKKLQ-----IVRANITSQKGLSWVIEALTGGELARLDL 269
Query: 293 DLLKRELQTFEFEQN----KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 348
LL R F + KR RE + A LV HN D + F+ LP
Sbjct: 270 RLLWRPDGMFTAAEGSMLTKRSEALREK---LRAGPPVLVGHNLFTDLVNFYKCFIGDLP 326
Query: 349 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQAN 408
+ +F ++ FP V+D Y+ G ++ + + ++ L A E+PN
Sbjct: 327 GRVEDFQQAIHELFPVVVDTKYMATHGGVLR---DAFSALSKLNETLGA---REVPNFET 380
Query: 409 ENEGKIH---------GHNVVKICQLFGKLC 430
++E + G++ + Q+F KL
Sbjct: 381 DSEHSAYIANAPQHEAGYDSLITAQVFLKLA 411
>gi|451993381|gb|EMD85855.1| hypothetical protein COCHEDRAFT_1187827 [Cochliobolus
heterostrophus C5]
gi|452000264|gb|EMD92725.1| hypothetical protein COCHEDRAFT_1172140 [Cochliobolus
heterostrophus C5]
Length = 620
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 19/185 (10%)
Query: 47 HISSSDFIAVSLQNTGSFS----SPWHRVSTFDTPETAYLKAKFAAERFQILQFAI--CP 100
+I+ +DF++ L+ +G S P F T E Y + K A+R+QILQ I
Sbjct: 18 NIAEADFVSFDLELSGIPSRIQDKPPRGPGRF-TMEERYAETKMGADRYQILQVGITCAR 76
Query: 101 FKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYL 160
F A K + PYN + P + ++ Q+ T + K GFD +G+ YL
Sbjct: 77 FDYIADKYVLRPYNIDISPLFDERIDF-EREIRFQSGACTFLLKNGFDLGLPFANGVQYL 135
Query: 161 SEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERVRSRVKHWKNACTDS 215
S ++ K R MA D K + P L V F+ RVR + WK +
Sbjct: 136 S--RQEAEKARQ---MACDRLEKKNPVPDLHLKEGDVESLDFMRRVREAINKWKTTTSSG 190
Query: 216 -DIKT 219
DI T
Sbjct: 191 LDITT 195
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
F ++ + Q LV HN D +++ F+ LP +++F + FP++ID YL
Sbjct: 307 FDRAMERLKTRQPVLVGHNMFTDIVYLYRTFVGELPDTLDDFQDVIHELFPKIIDTKYL 365
>gi|297283531|ref|XP_002808334.1| PREDICTED: LOW QUALITY PROTEIN: poly(A)-specific ribonuclease
PARN-like [Macaca mulatta]
Length = 596
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/392 (19%), Positives = 150/392 (38%), Gaps = 95/392 (24%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPE---------- 51
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+ P F CQ+S + +A +GFD
Sbjct: 52 -----------------------------------ERSSPDVKFVCQSSSIDFLASQGFD 76
Query: 149 FNTCIYDGISYLSEAQESTVK-------VRMGNPMAVDHATKSSSSPALSVADTV--FIE 199
FN +GI YL++ +E ++ + A+ + + ++S +++ + FI+
Sbjct: 77 FNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKFID 136
Query: 200 RVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259
+V +++ + + ++ E RK++ + + ++ + +
Sbjct: 137 QVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE------ 190
Query: 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVI 317
R ++ S ++++ +RE Q EQ + GF VI
Sbjct: 191 ----------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVI 228
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI---DVNYLLKD 374
I+ S K ++ HN L D +F PLP +++EF FP+ D++++ K
Sbjct: 229 HAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRXAFFEDLSFIXKS 288
Query: 375 IGPVKKMTNISATIAYLKNRF----FAPIEME 402
+ N S +A L+ R F+P ++E
Sbjct: 289 QLGTDIINNTS--LAELEKRLKEIPFSPPKVE 318
>gi|403222320|dbj|BAM40452.1| uncharacterized protein TOT_020000708 [Theileria orientalis strain
Shintoku]
Length = 625
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 78/361 (21%), Positives = 132/361 (36%), Gaps = 54/361 (14%)
Query: 25 HHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKA 84
H++ +K N++ I I SDF+A+ ++ TG + F E Y
Sbjct: 75 HNFTTNVTSKLNWDNHCQLIVELIKESDFVALDVEYTGLHI----KDERFIGVEKCYESH 130
Query: 85 KFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
A++F Q + + + P + P D +F+ S L +
Sbjct: 131 VSGAKKFIPCQIGLTMARFEGGTWKVTPTSIFTIPSD-------GNTFSVNMSTLNFLKD 183
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-VDHATKSSS-------------SPAL 190
FDFN+ I GI +L +E K + + +A +D T+ + +
Sbjct: 184 NNFDFNSWIRHGICHLKPKEEEERKSLILSKLAHIDELTRGINKEDEEFKVNEYDLTNIQ 243
Query: 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSER 250
+ D +E V RV+ W + ++ E LR ++ P++ + C +
Sbjct: 244 DLEDRKTVEEVVKRVEGWLFSQDKKPLEFEVESAFLRLLIHSVISI-KFPNIYSNSCKKD 302
Query: 251 QVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRV 310
+LV ++ R +L S D+ L EL E R
Sbjct: 303 DRKLVRVY--------------------KSQRELLES---DRATLLSELSEIE-----RE 334
Query: 311 RGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY 370
G R + D IS+ +K LV HN D ++ F LP + F FP+V D Y
Sbjct: 335 VGLRTLFDTISSHKKILVGHNCFYDILHVYQTFYGDLPDTVESFKAEWLKVFPKVFDTKY 394
Query: 371 L 371
+
Sbjct: 395 I 395
>gi|401421012|ref|XP_003874995.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491231|emb|CBZ26497.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 510
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/347 (21%), Positives = 137/347 (39%), Gaps = 69/347 (19%)
Query: 35 TNFNE--SLSEIKNHISSSDFIAVSLQNTG--------SFSSPWHRVSTFDTPETAYLKA 84
T FN+ +L + + +F A+ + TG SF +P PET Y
Sbjct: 4 TRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSTSFGAP---------PETVYHAK 54
Query: 85 KFAAERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAM 142
+ A E + Q I F K + + PYNF+L +L++ + SF +
Sbjct: 55 RAAVEAYNAFQMGIALFTKTENNTYEVRPYNFYLLNGSGDLRLNLSVVSF---------L 105
Query: 143 AKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVR 202
A +F + G+ + +E +E+T + ++ P DH + + ++ D
Sbjct: 106 AANHLNFQAWLTSGLPFCNEQEEATYEEKLITPF-TDHTEQQMADSLINAID-------- 156
Query: 203 SRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262
W +EAL+ L + ID+ R++Q LE
Sbjct: 157 ----EWM------PTGSEALLKELPCV--------------IDLA--RRLQ---SFLERR 187
Query: 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLIS 321
D + + K Q ++ L D ++ + ++E + + E+++ GFR+ ++
Sbjct: 188 YDSRITVNYDGKPYLGQKMKFTLKKLDTNEWISEKEKRRLQCERDRAQHLGFRQFWKILV 247
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
S+KP+V HN + D F+ PL + EF L+ P + D
Sbjct: 248 QSRKPIVGHNFMQDVMFMVHMHETPLSQDYLEFKKVLQRTLPSIYDT 294
>gi|403330912|gb|EJY64371.1| Putative poly [Oxytricha trifallax]
Length = 1969
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 92/201 (45%), Gaps = 8/201 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF +L I+ I + +FI++ + +G S + ++T E YLK K+ +
Sbjct: 2 EITSANFEANLPLIQESIETCEFISIDTEFSGLSISMDDKPHNYETVEERYLKTKYIVTK 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F Q IC F Q + P++F++FP+ +++ + Q+S + + K FD
Sbjct: 62 FLAFQIGICTFHWNQQEKRYYCRPFSFYVFPKSKIQ----DSTVLIQSSAINFLTKNHFD 117
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
FN +S+ ++ ++ + A + S LS +T +E++ + W
Sbjct: 118 FNKLFSKPLSFCQLSRIDEIE-NLCKQKANRTLSSSRFISQLSEPNTKRLEQILEEIDEW 176
Query: 209 KNACTDSDIKTEALVT-SLRK 228
S +K ++ + SLRK
Sbjct: 177 VYDSNSSQLKHYSIDSLSLRK 197
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI + S+KP+V HN + D FI+++F LP + +F +L FP+ D L
Sbjct: 363 GFTRVIGTMVKSKKPIVGHNLMFDICFIYNQFCGDLPDSFKDFYTLWKLFFPETYDTKVL 422
>gi|340055314|emb|CCC49627.1| putative ribonuclease, fragment, partial [Trypanosoma vivax Y486]
Length = 166
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
Q+T+ NF + + + DF A+ + TG + S DTPE Y + AA R
Sbjct: 2 QVTRDNFPAVFPKFVELLQTCDFYAIDEEMTG-INVADKPESITDTPEETYRAKREAASR 60
Query: 91 FQILQFAICPF---------KLQASKVIAYPYNFHLFPRDELKM---GMPSYSFTCQTSY 138
+ I+Q IC F + + A P+NF LFP M G+ S S
Sbjct: 61 YSIIQVGICLFHKDDDTNCGSAKKASYTARPFNFILFPTHVEGMTNTGL-SQDVVLSASS 119
Query: 139 LTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
L + + G DF + +Y G++Y + A E+ ++
Sbjct: 120 LAFLRRHGMDFQSWVYRGLAYCNAAGETVLR 150
>gi|156085621|ref|XP_001610220.1| CAF1 family ribonuclease containing protein [Babesia bovis]
gi|154797472|gb|EDO06652.1| CAF1 family ribonuclease containing protein [Babesia bovis]
Length = 551
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/395 (20%), Positives = 142/395 (35%), Gaps = 67/395 (16%)
Query: 33 TKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAY--LKAKFAAER 90
++ ++ + + E + I SDF+A+ ++ TG + Y L + A
Sbjct: 7 SRLSWRDHVDEARRAIRESDFVALDVEYTG-----------LHLKDDRYVGLDKCYEAHA 55
Query: 91 FQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
QF C L A++ + + + P + + F TS L + FDF+
Sbjct: 56 SGAKQFIPCQVGLTAARYMGDNL-WSIHPMSVYTLPSSNKFFKVSTSTLQFLKDNNFDFH 114
Query: 151 TCIYDGISYLSEAQESTVKVRM-GNPMAVDHATKSS-----------SSPALSVADTVFI 198
+ I+ G+ +L+ ++ES +K + +DH + + +L D +
Sbjct: 115 SWIHHGVEHLTPSEESDLKFAIEQRKKELDHMLQQAPPDTAVKGVDFDLSSLGADDRLMA 174
Query: 199 ERVRSRVKHWKNACTDS--DIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
ER R++ W + T + +I+ E+ L + G+QF S + ER + +
Sbjct: 175 ERTIERIQTWISDGTSAPLEIEMESAFQRLLMHTIIGQQFPQVYSHSARRGDERVICVYK 234
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE--FEQNKRVRGFR 314
+E L K +L T E E+ G R
Sbjct: 235 SQIE---------------------------------LYKEQLSTLETDIERINEQIGVR 261
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
+ D I + K LV HN D ++ F LP + EF S F D Y
Sbjct: 262 VLFDEIVNNGKILVGHNCFYDILHVYQTFYGELPEGVEEFRKSWTERFRNTFDTKY---- 317
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANE 409
IG + A L+ F E N+A +
Sbjct: 318 IGEFHESVAAPQHSATLRGLFDHMCSTESANKAGQ 352
>gi|344240241|gb|EGV96344.1| Poly(A)-specific ribonuclease PARN [Cricetulus griseus]
Length = 367
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 91 FQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +GFD
Sbjct: 3 FLLFQFGLCAFKYDHTDSKYITKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQGFD 61
Query: 149 FNTCIYDGISYLSEAQESTVK 169
FN GI YL++ +E ++
Sbjct: 62 FNKVFCSGIPYLNQEEERHLR 82
>gi|330914662|ref|XP_003296730.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
gi|311331005|gb|EFQ95186.1| hypothetical protein PTT_06908 [Pyrenophora teres f. teres 0-1]
Length = 632
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 79/199 (39%), Gaps = 17/199 (8%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG---SFSSPWHRVSTFDTPETAYLKAKFAA 88
I +F L + +IS +DF++ L+ +G R T E Y + K A
Sbjct: 3 IDAASFPHHLLGLFVNISEADFVSFDLELSGIPSRIQDKPARGPGRLTLEERYAETKMGA 62
Query: 89 ERFQILQFAI--CPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+R+QILQ I F A K + PYN + P + ++ QT T + G
Sbjct: 63 DRYQILQVGITCARFDYIADKYVLRPYNITISPLLDERLDF-EREVRFQTGACTFLLNNG 121
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL-----SVADTVFIERV 201
FD G+ YLS + K MA D + P L V F+ R+
Sbjct: 122 FDLGAPFAKGVQYLSREEAERAKQ-----MAWDRLENKNPIPDLQLKKEDVESLDFMRRI 176
Query: 202 RSRVKHWKNACTDS-DIKT 219
R +K WK + S D+ T
Sbjct: 177 REAIKTWKTGSSSSLDVTT 195
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ ++ + Q LV HN D +++ F+ LP + F ++ FP++ID YL
Sbjct: 307 YDRAVERLKTKQPVLVGHNMFTDIVYLYRTFVGQLPDTLQGFQATIHDLFPKIIDTKYL 365
>gi|315042243|ref|XP_003170498.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
gi|311345532|gb|EFR04735.1| hypothetical protein MGYG_07743 [Arthroderma gypseum CBS 118893]
Length = 563
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETA----YLKAKF 86
++T+ NF L + I F+A+ + +G F+ S + + + Y + K
Sbjct: 2 EVTRNNFARLLPRMLQDIGDCSFVALDFEFSGIFNQKTRPASAYADGDLSLQKRYEEVKQ 61
Query: 87 AAERFQILQFAICPFKLQASKVIAY---PYNFHLFPRDELKMGMPSYSFTCQTSYLTAMA 143
AAE +QILQ + ++ S+ Y PYN L P + K+ + ++ Q+S + +
Sbjct: 62 AAEEYQILQVGLT-LVVEDSENGNYSLRPYNIPLSPVLDPKLEV-ERKWSFQSSAVAFLM 119
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSP----ALSVADTVFIE 199
GF + DG+ Y+S +E + M H KSS SP L+ FI
Sbjct: 120 SHGFRVESIFTDGVPYISMKEEQ-------DAMDRAHQDKSSISPINFDTLAADQAEFIR 172
Query: 200 RVRSRVKHW 208
+VR +K W
Sbjct: 173 QVRHDIKEW 181
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 386
LV HN D + F+ LP + +F S+ FP VID YL G +++ ++ +
Sbjct: 322 LVGHNLFTDLVNFYKCFIGDLPRRVEDFQQSINELFPLVIDTKYLATAGGVLREASSALS 381
Query: 387 TIAY-LKNRFFAPIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESS 443
T+ L R E + A IH G++ + Q+F KL L T SS
Sbjct: 382 TLCENLGAREVPKFETHPDHSAYTVSTPIHEAGYDSLMTAQIFLKLAVQLYET----SSS 437
Query: 444 DDFLASAINRYAN--IFYSLPGSSQEPTNEE 472
+ L + NR A L EP+ E+
Sbjct: 438 REALLNRANRDAAEVDLMDLSTEPDEPSEEQ 468
>gi|344239263|gb|EGV95366.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 171
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 37 FNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAERFQIL 94
F E+LS + + I+ +DF+++ +Q TG S SS ++S FD P Y+K + + ++F I
Sbjct: 8 FAETLSFLHDIINEADFVSLDIQFTGLCSNSSRPQQISLFDLPSEWYMKTRQSVQQFTIC 67
Query: 95 QFAICPF---KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ + F + +++K +A+ NF LFP G+ F+ Q S + + N
Sbjct: 68 RIGLSVFSSIEGESNKYVAHSCNFFLFPT---TFGILDSEFSFQASSVQFL-------NK 117
Query: 152 CIYDGISYLSEAQESTVKVRMGN 174
+GI Y++E QE + GN
Sbjct: 118 FFKNGIPYMNEEQEIKESILRGN 140
>gi|241565990|ref|XP_002402057.1| conserved hypothetical protein [Ixodes scapularis]
gi|215499948|gb|EEC09442.1| conserved hypothetical protein [Ixodes scapularis]
Length = 514
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ ++T +NF++ L EI+ I+ + F+AV + TG P S FD+ + Y K +
Sbjct: 1 MTEVTLSNFDDLLPEIEAAIAGAAFVAVDTEFTGLVREPAAAPSLFDSADARYQKLRQTV 60
Query: 89 ERFQILQFAICPFKLQASKVI--AYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
+ + Q +C F S+ + A Y +L PR G F+ Q S + + + G
Sbjct: 61 SSYIVCQLGLCTFTSVPSENLYKASAYTIYLCPR---SFGSTDPQFSVQASSIEFLCRNG 117
Query: 147 FDFNTCIYDGISYLSEA 163
FDFN C Y+G+ Y A
Sbjct: 118 FDFNKCFYEGLPYADRA 134
>gi|357504869|ref|XP_003622723.1| CCP [Medicago truncatula]
gi|355497738|gb|AES78941.1| CCP [Medicago truncatula]
Length = 124
Score = 57.8 bits (138), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 554 LREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSN 613
L+E+ SDGL+ GYETY+ +C GLWE LA++L+KTL +E E K + ++
Sbjct: 57 LKELASDGLRVTGYETYRTMCRLGLWEVDLAESLEKTLECSLNDTEIHSERKPDIQWCND 116
Query: 614 ELINLAEL 621
+INL +L
Sbjct: 117 NVINLDDL 124
>gi|350631915|gb|EHA20284.1| hypothetical protein ASPNIDRAFT_121560 [Aspergillus niger ATCC
1015]
Length = 559
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W + + L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEW---LALGKAREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE---- 228
Query: 265 VLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV----- 316
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEALA 282
Query: 317 ------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHSK 342
I+L+S+S+ +P LV HN D +
Sbjct: 283 GGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCRC 342
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 389
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 343 FFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|317038388|ref|XP_001402264.2| CAF1 family ribonuclease [Aspergillus niger CBS 513.88]
Length = 559
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W + + L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEW---LALGKAREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE---- 228
Query: 265 VLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV----- 316
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEALA 282
Query: 317 ------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHSK 342
I+L+S+S+ +P LV HN D +
Sbjct: 283 GGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCRC 342
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 389
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 343 FFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|134074883|emb|CAK38993.1| unnamed protein product [Aspergillus niger]
Length = 480
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 165/411 (40%), Gaps = 73/411 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSAKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETATYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L V D F++ VR
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVGDHEYESLAFLKDVRRL 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W + + L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDEW---LALGKAREDYLNIPPPRPITGPAPSNHPKSMPTDL-NRFQKRLVHQLIE---- 228
Query: 265 VLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV----- 316
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 VEYPSLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEALA 282
Query: 317 ------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHSK 342
I+L+S+S+ +P LV HN D +
Sbjct: 283 GGDLTNLEPFCFINLMSSSKENPQSSLQDFSRGVKQRLQKNRPVLVGHNLFTDLIYFCRC 342
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 389
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 343 FFGPLPDRVEDFQAMAHEMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|270013255|gb|EFA09703.1| hypothetical protein TcasGA2_TC011836 [Tribolium castaneum]
Length = 535
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 142/372 (38%), Gaps = 47/372 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++TK NF + L EIK + + FI++ L+ + FD + Y K +
Sbjct: 3 EVTKNNFKQKLPEIKRSLEKAKFISIDLEFSALQPVEHQAPRLFDDNKERYAKLRLNLLN 62
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
+Q I F + + + F + P G +F Q S L+ + FD
Sbjct: 63 VIPVQVGITAFHFDNKTNDYFGEVFTFWVAPA---CFGDTDKAFYFQASTLSFLTMYKFD 119
Query: 149 FNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
FN Y G+ +L+ +A++ +K++ G+ + + + AL V +
Sbjct: 120 FNKFAYSGVPFLNSKDARDLRLKLKSGDLVGENCTLRHELDEALKAHTPV--------IS 171
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W N+C D V + +FG P + + ++ K L +
Sbjct: 172 KWYNSCKIGDFLEIPDVYN---------RFG--PFYELLYFLHKHLRKRFKNLWTYDRNG 220
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
V + T+A L D + +L F + V D ++A +KP
Sbjct: 221 VFCVKKV----TEADFTELEKRCSLDDAILDDLTGF-----------KHVFDTLTALKKP 265
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID---VNYLLKDIGPVKKM-- 381
+V HN L D + + F LP + ++ FP + D + Y L+ P +K+
Sbjct: 266 IVGHNVLQDLMIMINNFENALPESYLQYKALAHQLFPTIFDTKTIYYELRATIPREKLPD 325
Query: 382 -TNISATIAYLK 392
T++SA Y +
Sbjct: 326 DTSLSALFDYFR 337
>gi|389603471|ref|XP_001569280.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505865|emb|CAM44421.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 510
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 130/347 (37%), Gaps = 67/347 (19%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--------SFSSPWHRVSTFDTPETAYLK 83
IT+ N +L + + +F A+ + TG F +P PE Y
Sbjct: 3 ITRFNQIVALPDFAREVERCEFCAIDQEMTGVDVPGIPTQFGAP---------PEAVYHA 53
Query: 84 AKFAAERFQILQFAICPFKLQASKVI-AYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTA 141
+ A E + Q I F+ + V PYNF+L +L++ +P+ SF
Sbjct: 54 KRIAVETYNAFQIGIALFRKTENNVYEVRPYNFYLLNDSGDLRLALPAVSF--------- 104
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+A +F + G+ + + +E +D+ + + T+F + V
Sbjct: 105 LAANHMNFQMWLTAGLPFCNAQEE------------LDYEKQIT---------TLFTDEV 143
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
+ + D I T S P + CS Q + L
Sbjct: 144 EHEISNDLVKAIDEWIPT-----------------ASAPLVKELSCSLNLAQRLQAFLSH 186
Query: 262 FSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK-RVRGFREVIDLI 320
D + + K Q ++ LT + + + ++E + E+++ R GFR+ ++
Sbjct: 187 RYDSRIVINYDGKPYLAQKIKFTLTKLSKAEWISEKEKRRLRCERDRARQLGFRQFWKIL 246
Query: 321 SASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
S+KP+V HN + D F+ PLP + EF L+ P + D
Sbjct: 247 LKSRKPIVGHNFMQDIMFMIHMHETPLPVDYLEFKKLLQRTLPTIYD 293
>gi|281200346|gb|EFA74567.1| hypothetical protein PPL_00067 [Polysphondylium pallidum PN500]
Length = 525
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
R +IDL+S Q+PLV HN D F+ F+ LP +N FI L FP++ D +L
Sbjct: 232 RRIIDLLSKHQQPLVIHNGFYDLLFLFQSFIDDLPDQLNVFIAKLTKVFPKIYDTKFL 289
>gi|403366643|gb|EJY83125.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Oxytricha trifallax]
Length = 554
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 273 AKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-------GFREVIDLISASQK 325
AK G +V + SD+D FE + N+ V GF +V++ + ++K
Sbjct: 191 AKKNGKSSVNSKYQMSDKD----------FEMQNNQEVIDITEYEIGFSKVVEEMINAKK 240
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG 376
PLV HN + D F++ +F+ LP + EFI + FP + D + +++G
Sbjct: 241 PLVGHNMMLDIMFLYQQFIDDLPLTLREFIVKFQEKFPAIYDTKAISQNMG 291
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 6/132 (4%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+IT NF E I I S +FIA + +GS + FD+ + Y K + A ++
Sbjct: 2 EITVENFEEKFDLIAKSIRSCEFIAFDTEFSGSKIGYEDKPHEFDSLDDKYRKNRSAVQK 61
Query: 91 FQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
F Q I F K I P+NF ++PR L+ + + + + FD
Sbjct: 62 FLAFQVGITTFMWSNMKKKYIGRPFNFLVYPRHILQERYHH----ANSDTIDFLKRYSFD 117
Query: 149 FNTCIYDGISYL 160
FN G++ L
Sbjct: 118 FNKVFRYGLTTL 129
>gi|71649930|ref|XP_813674.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70878580|gb|EAN91823.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 517
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 61/343 (17%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
+ +N + DF AV + TG R PE Y + +R+ QF I
Sbjct: 12 FEDFQNSLEKCDFYAVDQEMTGVDFDGQQRSRFMSLPEL-YEACRGVVKRYIAFQFGITL 70
Query: 101 F-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISY 159
F +L++ PYNF+L F T + + DF + G+ Y
Sbjct: 71 FTRLKSGGYEVKPYNFYLLKE--------HCDFGVNTDAIRFLVAHKLDFQKWLAFGVHY 122
Query: 160 LSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
++ +E ++ NP ++ K VF V + +K W K
Sbjct: 123 CNKEEEGRFTMKKENPSCLELKEK-----------IVF--HVVNEIKKW----YLDPYKK 165
Query: 220 EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAK----- 274
E + SL+ ++ G + ++ + E+ + + L+ E +P+ +
Sbjct: 166 EEEILSLKTVMTKGIE-----ALVMSTLKEQDIYVNLEYDEISKLYELPVELTVHRVDRN 220
Query: 275 ----GGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAH 330
GG AV + S++ GFR++ ++ +KP++ H
Sbjct: 221 KLDLEGGKTAVNSAGVFSEK--------------------LGFRQIWKCLTKCKKPIIGH 260
Query: 331 NSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
N D F+ APLP +F + FP + D L K
Sbjct: 261 NFWLDIMFMLHMHEAPLPARYEDFKKQVHELFPCIYDTKTLSK 303
>gi|157877855|ref|XP_001687225.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68130300|emb|CAJ09612.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 510
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 137/343 (39%), Gaps = 61/343 (17%)
Query: 35 TNFNE--SLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFAA 88
T FN+ +L++ + +F A+ + TG S+P+ PE Y + A
Sbjct: 4 TRFNQLVALADFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAAV 58
Query: 89 ERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKEG 146
E + Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 59 EVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAANH 109
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVK 206
F T + G+ + + +E+ + ++ + DHA + ++ + D
Sbjct: 110 LSFQTWLTSGLRFCNAKEEAAYEEKL-KTLFTDHAEQQIANALIEAVD------------ 156
Query: 207 HWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W + +K P M ID+ R++Q L+ D
Sbjct: 157 EWMPTGSGPLVK-------------------ELPCM-IDLA--RRLQ---SFLDHRYDSR 191
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISASQK 325
+ + K Q ++ LT D ++ + ++E + + E+++ + GFR+ ++ S+K
Sbjct: 192 ITVDYDGKPYLGQKIKFTLTRLDANEWISEKEKKRLQCERDRAEQLGFRQFWKILLQSRK 251
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
P+V HN + D F+ AP+ + EF L+ P + D
Sbjct: 252 PIVGHNFMQDIMFMVHMHEAPISHDYVEFKKVLQRTLPTIYDT 294
>gi|71663249|ref|XP_818620.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70883881|gb|EAN96769.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 517
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/344 (20%), Positives = 127/344 (36%), Gaps = 45/344 (13%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I K++ + +N + DF AV + TG R PE Y + +R+
Sbjct: 3 IDKSSLFFIFEDFQNSLEKCDFYAVDQEMTGVDFDGQQRSRFMSLPE-LYEACRGVVKRY 61
Query: 92 QILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
QF I F +L++ + PYNF+L F T + + DF
Sbjct: 62 IAFQFGITLFTRLKSGGYVVKPYNFYLLKE--------HCDFGVNTDAIKFLVAHKLDFQ 113
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ G+ Y ++ +E + NP ++ K VF V + +K W
Sbjct: 114 KWLAFGVHYCNKEEEGRFTTKKENPSYLELEEK-----------IVF--HVVNEIKKW-- 158
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 270
K E + SL+ ++ G + + I E+ + + L ++ ++
Sbjct: 159 --YLDPYKKEEEILSLKTVMTKGIE-----AFVISTLKEQDIYVNL----EYDEISKLYE 207
Query: 271 IPAKGGGTQAVRAVLTSSDEDK-DLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVA 329
+P V+ + D +K DL + GFR++ ++ +KP++
Sbjct: 208 LP--------VQLTVHRVDRNKLDLEGEKTAVNSASVFSEKLGFRQIWKCLTKCKKPIIG 259
Query: 330 HNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK 373
HN D F+ APLP +F + FP + D L K
Sbjct: 260 HNFWLDIMFMLHMHEAPLPTMYEDFKKQVHELFPCIYDTKTLSK 303
>gi|268556560|ref|XP_002636269.1| Hypothetical protein CBG08556 [Caenorhabditis briggsae]
Length = 564
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/344 (18%), Positives = 134/344 (38%), Gaps = 25/344 (7%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I +NF E +++ + SDF+++ + G ++ +S DT E Y + ++
Sbjct: 4 IKDSNFLELAPQLRKTLLQSDFVSIDFEFLGLDTTA---ISLHDTAEKRYEILRANVIKY 60
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q + FK +++K Y + + P + + G S + + L + + FD N
Sbjct: 61 RPCQLGLSFFKQKSNK--GYKADSYSIPLCQ-RFGASDTSISVNS--LRFLLENNFDLNQ 115
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
I DG+ + + A+ + + A+ + +K + + + R + + +
Sbjct: 116 VITDGVEFCTRAEIKKFEEALSKGTALSYISKDKQMKVEQLKVMLHEKCFRVKAEMITHT 175
Query: 212 CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLII 271
+ ++ S + + L M +CS + + F +L L
Sbjct: 176 TEEPSQDCRLIINSDKPVSL---------KMPAGLCSVETYIAIHDITNSFPHLLFSLNE 226
Query: 272 PAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHN 331
K + +T ++ K R ++FE G +++ +K +V HN
Sbjct: 227 KDKSLDVTMLPETMTETENKKQTRMRCTESFE--------GISAILEAAMMMRKVIVGHN 278
Query: 332 SLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
SL D +++ F + LP F FP+VID L + I
Sbjct: 279 SLLDAMYMYHYFFSSLPLKYRNFKREFNSLFPKVIDTKILAQVI 322
>gi|300120079|emb|CBK19633.2| unnamed protein product [Blastocystis hominis]
Length = 567
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 134/346 (38%), Gaps = 46/346 (13%)
Query: 22 QNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAY 81
Q P + IT NF E L + I S+FIA L+ +G+ P+ R DT ET Y
Sbjct: 2 QTPKIEEVIDITVNNFEECLPYVLETIRKSEFIAFDLEFSGTDYKPYFRCVYADTFETRY 61
Query: 82 LKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFT-CQTSY-- 138
K + AE + ++ IC F K + Y+ R + + ++S +TSY
Sbjct: 62 AKYRVDAENYYPIELGICCFYWDDEK---HWYSSVFALRIVSYVALSTFSSAPMRTSYAS 118
Query: 139 -LTAMAKEGFDFNTCIYDGISYLSEAQESTV--KVRMGNPM--AVDHATKSSSSPALSVA 193
L + F F +GI L ++ E + +RM D + S P
Sbjct: 119 TLDFLRNNHFKFGRLFSEGIPTLRKSDEEKILEHLRMSQDRYDYKDDKERESMEPIFEQI 178
Query: 194 DTVFIERVRSRVKHWKNACTDSDIKTEAL----VTSLRKIVLGGEQFGSRPSMTIDVCSE 249
++ +I+ + + N TD + TE+L + S ++ +L E P++++ E
Sbjct: 179 NS-WIQAMNRDAQLSPN--TDHSLATESLLLPPLNSHKRKLLYQEVSNRYPTLSLKELPE 235
Query: 250 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
G + R +T + + E E Q+
Sbjct: 236 DN---------------------PSTGKIKRTRIFVTKQPSE----RIEPAVPEVCQHA- 269
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFI 355
G R V++ I S+KPLV ++ D ++ LP + EF+
Sbjct: 270 --GVRRVVEAILESKKPLVGFQTMGDVMYMLGGIYKELPRTLPEFL 313
>gi|307203543|gb|EFN82576.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Harpegnathos saltator]
Length = 355
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 133/330 (40%), Gaps = 56/330 (16%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
+ +T NF E ++++ + ++ FIA+ + +G + S FD+ E Y K +
Sbjct: 1 MNDVTNNNFKEIYPQLEHTLKNATFIAIDSEFSG-IKDENIKTSLFDSIEERYDKNRNII 59
Query: 89 ERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYS--FTCQTSYLTAMAK 144
+ I+QF I F+ ++ A +NF + P+ +PS + S + +A+
Sbjct: 60 RPYIIVQFGITAFQRIHDENQYNAEIFNFFILPK-----SIPSKNRQVLWDVSSMEFLAE 114
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
FDFN + I Y+ E ++ ++ ++ + + + +S + ++ +
Sbjct: 115 HEFDFNKLAHHSIPYIDEQEKEILQQQIQQNTLIYNIKQ-----VISFTEEDTLKNTINE 169
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W D T+ KI S P++ + E +
Sbjct: 170 VAKWLATNIDE--------TNSFKIK------TSSPNLQYLMHKELRKHF---------- 205
Query: 265 VLVPLIIPAKGGGTQAVRAV------LTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 318
P I G + V V + S +ED L L+++ GF +V +
Sbjct: 206 ---PNIWTLSGNESVTVIKVEPNTREILSEEEDLILENALLESY--------MGFSKVFN 254
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLP 348
L+ +KP++ HN L D F++ +F PLP
Sbjct: 255 LLVTLKKPIIGHNVLLDLMFMYQQFYKPLP 284
>gi|237837885|ref|XP_002368240.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|211965904|gb|EEB01100.1| poly(A)-specific ribonuclease, putative [Toxoplasma gondii ME49]
gi|221508992|gb|EEE34561.1| CAF1 ribonuclease family protein [Toxoplasma gondii VEG]
Length = 1022
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 154/377 (40%), Gaps = 40/377 (10%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
L ++ ++ ++F+A+ ++ TG + F + Y A+ F +Q +C
Sbjct: 322 LEALREVLAKAEFVALDVELTGLHM----KNEKFLGVDRCYEAHCEGAKNFLPVQLGLCA 377
Query: 101 FKLQAS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
+ ++ K I P + ++FPRD + F T L + + GFDFN + G
Sbjct: 378 ARRASAAEPHKWILTPASVYMFPRD-------ARLFQASTGTLMFLRENGFDFNKWLDQG 430
Query: 157 ISYLSEAQE----STVKVRMGN-PMAVDHATKSSSSPALS---VADTVFIER----VRSR 204
I +L +E ++VR+ + + H ++S++ S +D V +E +R
Sbjct: 431 IPFLRAQEEKEKRQALQVRIDDLEHLIKHRSRSATLRGASYNQTSDNVLVENHIFYASAR 490
Query: 205 V------KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 258
V K +++ KTE + S + + E +Q +L
Sbjct: 491 VAYETPEKSQESSSLLDTSKTEDRELAASARAAIHAWLASSSPEPLHLPVESPLQRLL-- 548
Query: 259 LEDFSDVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI 317
L P L + G + V A+ S +E + R L+ + + + +RG R+++
Sbjct: 549 LHSLVAAEFPSLYSLSVKVGDRRVLAIYQSEEEVYEEQLRGLRE-DIHRVEELRGVRQLL 607
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD--- 374
D +S + +V HN DF I A LP +++EF + FP D + +
Sbjct: 608 DDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLIAESHDA 667
Query: 375 IGPVKKMTNISATIAYL 391
+ P++ + +++
Sbjct: 668 LAPLQSPATLQGLCSFM 684
>gi|398025226|ref|XP_003865774.1| hypothetical protein, conserved [Leishmania donovani]
gi|322504011|emb|CBZ39098.1| hypothetical protein, conserved [Leishmania donovani]
Length = 510
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 59/344 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFA 87
IT+ N +L + + +F A+ + TG S+P+ PE Y + A
Sbjct: 3 ITRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAA 57
Query: 88 AERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 58 VVVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAAN 108
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
+F T + G+ + +E +E+ + ++ P DHA + +AD + +
Sbjct: 109 HLNFQTWLTSGLPFCNEQEEAAYEEKLQMPF-TDHAEQQ-------IADALI-----EAI 155
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
W A G E ID+ Q L + D
Sbjct: 156 DEWMPA--------------------GNEPLVRELPCVIDLARRLQSFLYRRY-----DS 190
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISASQ 324
+ + K Q ++ LT D ++ + ++E + + E+++ + GFR ++ S+
Sbjct: 191 RIAVNYDGKPYLGQKIKFTLTKLDTNEWISEKEKRRLQCERDRGQQLGFRLFWKILVQSR 250
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
KP+V HN + D F+ P+ + EF L+ P + D
Sbjct: 251 KPIVGHNFMQDVMFMIHMHETPISQDYLEFKKVLQRTLPSIYDT 294
>gi|407410179|gb|EKF32714.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 487
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 117/297 (39%), Gaps = 44/297 (14%)
Query: 81 YLKAKFAAERFQILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYL 139
Y + +R+ QF I F +L A PYNF+L F T +
Sbjct: 21 YEACRGVVKRYMAFQFGITLFTRLNAGGYEVKPYNFYLLKE--------HCDFAVNTDAI 72
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIE 199
+A DF T + G+ Y ++ +E ++ N +D K VF
Sbjct: 73 KFLAAHKLDFQTWLASGVHYCNKEEEGRFTMKKENYSYLDLEEK-----------IVF-- 119
Query: 200 RVRSRVKHWK-NACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 258
+ +++K W + C K E + SL+ ++ G + ++ + E+ + + L
Sbjct: 120 HIVNKIKEWYLDPC-----KKEEEILSLKTVMTKGIE-----ALVFSILKEQDIYVNL-- 167
Query: 259 LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVID 318
++ D+ +P + VR V + D + K + + K GFR++
Sbjct: 168 --EYDDISKLYELPVE----ITVRRV-NRNKFDVEGKKTGMNSASAFSEKL--GFRQIWK 218
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
++ +KP++ HN D F+ APLP +F + FP + D L K++
Sbjct: 219 CLTKCKKPIIGHNFWLDIMFMFHMHEAPLPARYEDFKKQVHELFPCIYDTKTLSKNM 275
>gi|146102538|ref|XP_001469360.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073730|emb|CAM72467.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 510
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 59/344 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTPETAYLKAKFA 87
IT+ N +L + + +F A+ + TG S+P+ PE Y + A
Sbjct: 3 ITRFNQLVALPDFAREVERCEFCAIDQEMTGVDVTGVSAPFGA-----PPEAVYHAKRAA 57
Query: 88 AERFQILQFAICPF-KLQASKVIAYPYNFHLF-PRDELKMGMPSYSFTCQTSYLTAMAKE 145
+ Q I F K + + PYNF+L +L++ + SF +A
Sbjct: 58 VVVYNAFQMGIALFTKTENNTYEVRPYNFYLLNDSGDLRLNLSVVSF---------LAAN 108
Query: 146 GFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRV 205
+F T + G+ + +E +E+ + ++ P DHA + +AD + +
Sbjct: 109 HLNFQTWLTSGLPFCNEQEEAAYEEKLHMPF-TDHAEQQ-------IADALI-----EAI 155
Query: 206 KHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDV 265
W A G E ID+ Q L + D
Sbjct: 156 DEWMPA--------------------GNEPLVRELPCVIDLARRLQSFLYRRY-----DS 190
Query: 266 LVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR-GFREVIDLISASQ 324
+ + K Q ++ LT D ++ + ++E + + E+++ + GFR ++ S+
Sbjct: 191 RIAVNYDGKPYLGQNIKFTLTKLDTNEWISEKEKRRLQCERDRGQQLGFRLFWKILVQSR 250
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDV 368
KP+V HN + D F+ P+ + EF L+ P + D
Sbjct: 251 KPIVGHNFMQDVMFMIHMHETPISQDYLEFKKVLQRTLPSIYDT 294
>gi|358374410|dbj|GAA91002.1| CAF1 family ribonuclease [Aspergillus kawachii IFO 4308]
Length = 869
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 163/411 (39%), Gaps = 73/411 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I+ F L + + ++S F+++ + +G + T + Y + K +A+++
Sbjct: 3 ISAQTFFYHLPRVLDDLASCCFVSIDFEFSGIAKGLGPSPKSRSTLQERYEEVKNSADQY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + PYN +L P + K+ + + + Q+S + + + F
Sbjct: 63 QILQVGLTICHEDPETETYTLKPYNLYLSPIIDRKLDL-DRNCSFQSSAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD-----TVFIERVRSR 204
+G++YLS +ES + R+ M + T + SS L VAD F++ R
Sbjct: 122 EDLYKNGVTYLSRDEESRIMARV---MQRNERTTARSS--LDVADHEHESIAFLKDARRL 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W + L + + G SM D+ + Q +LV +++E
Sbjct: 177 VDDW---LALGKARENHLNIPPPRPINGPAPPNHPKSMPTDL-NRFQKRLVHQLIE---- 228
Query: 265 VLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREV----- 316
V P L+ ++ G Q + DE ++ R+ Q ++ Q + + GFR +
Sbjct: 229 VEYPNLVTVSRPGFIQII-----DYDEQREKAVRD-QRVKWVQERIWKQTGFRWIAEALA 282
Query: 317 ------------IDLISASQ---------------------KP-LVAHNSLNDFTFIHSK 342
I+L+S+S+ +P LV HN D +
Sbjct: 283 GGDLTNLEPFCFINLMSSSKENPQSSLQDFSRRVKQRLQKNRPILVGHNLFTDLIYFCRC 342
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGPVKKMTNISATIA 389
F PLP + +F FP ++D Y+ I P + I+ ++A
Sbjct: 343 FFGPLPDRVEDFQAMAHKMFPVLMDTKYMATHNCGSINPRSSLQEINDSLA 393
>gi|401408295|ref|XP_003883596.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
gi|325118013|emb|CBZ53564.1| hypothetical protein NCLIV_033510 [Neospora caninum Liverpool]
Length = 751
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 128/314 (40%), Gaps = 32/314 (10%)
Query: 107 KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQE- 165
K I P + +L PR+ F T L + + GFDFN + G+ +L +E
Sbjct: 129 KWILTPASLYLLPRE-------GRLFQASTGTLMFLRENGFDFNQWLDQGVPFLRAQEEK 181
Query: 166 ---STVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEAL 222
++VR+ + ++H K S A T+ + S + NA D D L
Sbjct: 182 EKRQALQVRIDD---LEHLIKHRSRGA-----TMRDAQESSSLLDTTNA-EDRD-----L 227
Query: 223 VTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVR 282
S R + +R + + V S Q L+ ++ L L + G + V
Sbjct: 228 AASARASIQAWLASSTREPLHLPVESPLQRLLLHSLVASEFPSLYSLSVKL---GDRRVL 284
Query: 283 AVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 342
A+ S +E + R L+ + ++ + +RG R+++D IS + ++ HN DF I
Sbjct: 285 AIYQSEEEVYEEQLRGLRE-DIQKVEELRGVRQLLDDISDHKLLVIGHNCFYDFLHIFQT 343
Query: 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD---IGPVKKMTNISATIAYLKNRFFAPI 399
A LP +++EF + FP D + + + P++ + +++ A
Sbjct: 344 LYADLPQSVSEFKTAWTQLFPSTFDTKLIAESHDVLAPLQPPATLQGLCSFMGALAAATQ 403
Query: 400 EMEIPNQANENEGK 413
E + E EG+
Sbjct: 404 EPLSQAERGEREGR 417
>gi|350581696|ref|XP_003124631.3| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial [Sus
scrofa]
Length = 523
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 289 DEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 348
+E++ +++ Q E E+ K GF VI I+ S K ++ HN L D +F PLP
Sbjct: 131 EEERKRREQQKQAKEQEELKDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLP 190
Query: 349 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF----FAPIEME 402
++NEF FP+++D L+ P K + N + ++A L+ R F P ++E
Sbjct: 191 ADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 246
>gi|406865319|gb|EKD18361.1| CAF1 family ribonuclease [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 578
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWH----RVSTFDTP--ETAYLKA 84
+I + +F L I HI+++ F+ L+ +G + P H R P + Y +
Sbjct: 2 EIDQAHFRPQLLSILQHIANASFVTFDLEMSGISTRPKHSTGNRTHDVGKPSLQAQYDEM 61
Query: 85 KFAAERFQILQFAICPFKLQASK--VIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLT 140
+ AAE FQ+LQ I + K +A P+NF+L P D + + + FT S
Sbjct: 62 RSAAETFQVLQVGITCVEEDRDKEFYLARPFNFNLTPLSADGVDLRL-DRQFTFSASACD 120
Query: 141 AMAKEGFDFNTCIYDGISYLS 161
+ + FDF +G+ YLS
Sbjct: 121 FLNRNRFDFGKIFSEGVPYLS 141
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 308 KRVRGFREVIDLISASQKPL-VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
KRV+ + + +PL V HN D F+ F+ LP N+ F + FP+VI
Sbjct: 302 KRVQSELATVTTTLRTHRPLIVGHNLFADLAFLFRTFVGHLPVNVKHFQEDIHALFPRVI 361
Query: 367 DVNYL 371
D Y+
Sbjct: 362 DTKYV 366
>gi|221488487|gb|EEE26701.1| CAF1 ribonuclease family protein [Toxoplasma gondii GT1]
Length = 1022
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 76/377 (20%), Positives = 152/377 (40%), Gaps = 40/377 (10%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICP 100
L ++ ++ ++F+A+ ++ TG + F + Y A+ F +Q +C
Sbjct: 322 LEALREVLAKAEFVALDVELTGLHM----KNEKFLGVDRCYEAHCEGAKNFLPVQLGLCA 377
Query: 101 FKLQAS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDG 156
+ ++ K I P + ++FPRD + F T L + + GFDFN + G
Sbjct: 378 ARRASAAEPHKWILTPASVYMFPRD-------ARLFQASTGTLMFLRENGFDFNKWLDQG 430
Query: 157 ISYLSEAQE----STVKVRMGN-PMAVDHATKSSSSPALS---------VADTVFIERVR 202
I +L +E ++VR+ + + H ++S++ S V + +F R
Sbjct: 431 IPFLRAQEEKEKRQALQVRIDDLEHLIKHRSRSATLRGASYNQTSYNVLVENHIFYASAR 490
Query: 203 SRVKHWKNACTDSDI----KTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKM 258
+ + + S + KTE + S + + E +Q +L
Sbjct: 491 VAYETPEKSQESSSLLDTSKTEDRELAASARAAIHAWLASSSPEPLHLPVESPLQRLL-- 548
Query: 259 LEDFSDVLVP-LIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVI 317
L P L + G + V A+ S +E + R L+ + + + +RG R+++
Sbjct: 549 LHSLVAAEFPSLYSLSVKVGDRRVLAIYQSEEEVYEEQLRGLRE-DIHRVEELRGVRQLL 607
Query: 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD--- 374
D +S + +V HN DF I A LP +++EF + FP D + +
Sbjct: 608 DDVSDQKLLVVGHNCFYDFLHIFQTLYADLPQSVSEFKTTWTQLFPATFDTKLIAESHDA 667
Query: 375 IGPVKKMTNISATIAYL 391
+ P++ + +++
Sbjct: 668 LAPLQSPATLQGLCSFM 684
>gi|308504273|ref|XP_003114320.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
gi|308261705|gb|EFP05658.1| hypothetical protein CRE_27458 [Caenorhabditis remanei]
Length = 565
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 134/352 (38%), Gaps = 41/352 (11%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
I +NF E +I+ + SDFIA+ + G SS +S DT E Y + ++
Sbjct: 4 IKDSNFLELAPKIRKTLLHSDFIAIDFEFLGLDSSA---ISLHDTAEARYRILRENVVKY 60
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
+ Q + FK + + Y + + P L S L + FD N
Sbjct: 61 RPCQLGLSFFK--QTDNLGYKADSYSIP---LLQRFGDVDTKVSFSSLRFLLNNKFDLNQ 115
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNA 211
I DG+ + A+ ++ + A + +K ++ +++ K
Sbjct: 116 VITDGVEFCRRAEIRKFEIALRKGTATSYISKD----------------IQLQIELLKVM 159
Query: 212 CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLII 271
+ + E L KI + P++ V + V L K+ FS V + ++I
Sbjct: 160 LHEKCYRVE-----LEKITNSTIEPMQDPNLK--VAHNKPVSL--KVPSGFSSVEICMVI 210
Query: 272 PAKGGGTQAVRAVLTSSDEDKD--LLKRELQTFEFEQNKRVR------GFREVIDLISAS 323
S + + +L ++ E + R+R G +++
Sbjct: 211 HELTNAFPQFVFKFNSQNSTLNVAMLPEKMTETENKNQTRLRCSESFEGISAILEAAMMM 270
Query: 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
+K +V HNSL D +++ F APLP N N F FP++ID + + +
Sbjct: 271 RKVIVGHNSLLDAMYLYHYFFAPLPQNYNAFKRQFHGLFPKIIDTKLIAQSL 322
>gi|121717008|ref|XP_001275977.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119404134|gb|EAW14551.1| CAF1 family ribonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 578
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/454 (18%), Positives = 183/454 (40%), Gaps = 73/454 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T +F L I + +++ F+++ + +G ++ S T + Y + K +AE++
Sbjct: 3 VTAQSFAYHLPRILDELATCCFVSMDFEFSGIATASSAPSSGSQTLQERYEEVKRSAEKY 62
Query: 92 QILQ--FAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDF 149
QILQ IC + PYN L P + ++ + + Q+ + + + F
Sbjct: 63 QILQVGLTICHEDTGKATYTLKPYNICLSPIIDKRLEL-ERDWMMQSGAVEFLLENKFSM 121
Query: 150 NTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADT-----VFIERVRSR 204
+ +G+ YLS +E + A++ + ++ + V +T F++ R
Sbjct: 122 DAVFKNGVCYLSREEEELAMAK-----AIERRDRVATHTLIDVKETELESLAFLQAARRL 176
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
V W T D + + +G Q T++ +R LV +++E
Sbjct: 177 VDDWLAIRTTRD----SYLNIPPPTRIGHLQSSKSLPSTLNRFQKR---LVHQLIE---- 225
Query: 265 VLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLI---- 320
V P ++ G ++ + + ++ L ++ L + E+ + GFR + + +
Sbjct: 226 VEYPSLVTISNPG--FIQIIDYDEERERSLREQRLNRVQ-ERIWKQTGFRWIAEALAGGD 282
Query: 321 ---------------SASQKPL--------------------VAHNSLNDFTFIHSKFLA 345
SA+ KP+ + HN +D + + F
Sbjct: 283 LSNLDTSFFIGIMSNSAAVKPIYSLREFSEKLRERLQEHRPVLGHNIFSDLIYFYRCFFG 342
Query: 346 PLPPNMNEFICSLRLAFPQVIDVNYL-LKDIGPVKKMTNISATIAYLKNRFFAPIEMEIP 404
PLP + +F ++ FP ++D Y+ + G + +++ L R A ++EI
Sbjct: 343 PLPDKVEDFQSTMHELFPVLMDTKYMATHNCGSINPRSSLPEINDSLSKR--ATPKIEIH 400
Query: 405 NQANE-NEGKIH---GHNVVKICQLFGKLCSILK 434
+Q ++ N KI G++ + Q+F +L + L+
Sbjct: 401 SQYSKYNTRKIEHEAGYDSLLSAQIFIRLSAQLR 434
>gi|84994634|ref|XP_952039.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302200|emb|CAI74307.1| hypothetical protein, conserved [Theileria annulata]
Length = 623
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 136/350 (38%), Gaps = 69/350 (19%)
Query: 48 ISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK 107
I SDF+A+ ++ TG + E+ L AK +F C L +K
Sbjct: 105 IERSDFVALDVEYTGLHVKDERFIGVDKCYESHSLGAK---------KFIPCQIGLTMAK 155
Query: 108 VIAYPYNFHLFPRDELKMGMPSY--------SFTCQTSYLTAMAKEGFDFNTCIYDGISY 159
+ D K+ S SF+ S L + FDFN+ I DGI++
Sbjct: 156 ----------YENDLWKLTTTSLFTIPSEGKSFSVNMSTLNFLKDNNFDFNSWIRDGITH 205
Query: 160 LS---EAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSD 216
L+ E + ++ V + + ++ S S+ +E R+ S+
Sbjct: 206 LTPKEEEERKSLIVSKLHQIQLNLKNLSDSN----------VESTRNT----------SN 245
Query: 217 IKTEALVTSL-----RKIVLGGEQFGSRPSMTIDV-CSERQVQLVLKMLEDFSDVLVPLI 270
+ TE V+S+ R++V EQ R + I V E + L ++ F +L+ +
Sbjct: 246 VNTEYDVSSIKDLEDRRVV---EQMIERINEWILVEGDEGRAPLEFEVESAFLRLLMHSV 302
Query: 271 IPAK-------GGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQ--NKRVRGFREVIDLIS 321
I K VR V+ + + L + E + NK+V G R + D IS
Sbjct: 303 ISIKYPNLYSNSSQRNGVRYVMVYKTQMELLEEERKLLEEELEAINKQV-GLRTLFDKIS 361
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ K LV HN D I+ F LP N+ +F FP + D Y+
Sbjct: 362 KNNKILVGHNCFYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIFDTKYI 411
>gi|426254331|ref|XP_004020832.1| PREDICTED: poly(A)-specific ribonuclease PARN isoform 2 [Ovis
aries]
Length = 463
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 339
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 395
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 396 FAPIEME 402
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|403274049|ref|XP_003928802.1| PREDICTED: poly(A)-specific ribonuclease PARN [Saimiri boliviensis
boliviensis]
Length = 464
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 339
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 395
+F PLP ++NEF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 396 FAPIEME 402
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|429327871|gb|AFZ79631.1| hypothetical protein BEWA_024800 [Babesia equi]
Length = 582
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 137/362 (37%), Gaps = 69/362 (19%)
Query: 33 TKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQ 92
+K + E + I I ++DFIA ++ TG V + Y A++F
Sbjct: 30 SKLTWEEHRNIIIEAIKNADFIAFDMEYTGLHLKDDRYVGI----DKCYEAHSAGAKQFI 85
Query: 93 ILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTC 152
Q + KL+ P + + FP D + F TS ++ + FDFN+
Sbjct: 86 PCQIGLTMAKLENGVWNITPTSIYTFPSD-------NTVFKVNTSTISFLKDNNFDFNSW 138
Query: 153 IYDGISYLSEAQES----TVKVRMGNPMAVDHATKSSSSPALSVADTVF----------- 197
I +G+ +L +E ++ R+ + +KS++ SV F
Sbjct: 139 IRNGVLHLKPHEEQEKKKVIEERLKELQQMLEMSKSNTKSKPSVKPVKFNMSTIPDENDR 198
Query: 198 --IERVRSRVKHWKNACTDSD------IKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSE 249
V ++++ W DSD I E+ L + G+Q+ S + ++
Sbjct: 199 NTAISVMNKIEEW----IDSDDIKPLEIPMESAFQRLLMHTIIGQQYPQIFSHSTRRGND 254
Query: 250 RQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKR 309
+ + + E +++ ++ L ++ + S DE+
Sbjct: 255 KALCIYKSEYELYNEQILQL------------KSEMASVDEE------------------ 284
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
G R ++D ISA++K +V HN D I+ F LP ++ EF + P D
Sbjct: 285 -VGLRLLLDAISANKKIIVGHNCFYDILHIYQTFYKDLPESVQEFKDAWISKHPHTFDTK 343
Query: 370 YL 371
Y+
Sbjct: 344 YI 345
>gi|115534690|ref|NP_506169.2| Protein K10C8.1 [Caenorhabditis elegans]
gi|83764264|emb|CAA98954.2| Protein K10C8.1 [Caenorhabditis elegans]
Length = 566
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 145/356 (40%), Gaps = 56/356 (15%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T +NF ++ ++ + DF+A+ + G S +S DT E+ Y + ++
Sbjct: 4 VTDSNFLDAAGTLRKGLLYCDFVAIDFEFLGLDVSA---ISLHDTVESRYQILRDNVIKY 60
Query: 92 QILQFAICPFKLQASKVI-AYPYNFHLFPR---DELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ Q + FK ++++ A Y+ LF R ++ + +PS F + K F
Sbjct: 61 RPCQLGLTLFKQKSNRAYKADTYSVPLFQRFGDNDTSISLPSMRF---------LVKNKF 111
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
+ N DG+ + + + + + A + ++ S IE ++ V H
Sbjct: 112 NLNQVFMDGVEFCTRKEFKKFERALLAGTAASYLSREVKSQ---------IELLKVMV-H 161
Query: 208 WKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLV 267
K + S T ++KI L +P+ ++ L+M + S V
Sbjct: 162 EKCYQSTSYHITHRTDEPMQKIPLK-----MKPNSSVS----------LRMPRNLSSVEK 206
Query: 268 PLIIPAKGGGTQAVRAVLTSSDEDK----------DLLKRE--LQTFEFEQNKRVRGFRE 315
+II T+A L + DE + D LK + L+ ++ V+G
Sbjct: 207 YMIIYEL---TKAFPQFLFTCDEKQQNLHVKNISDDYLKEKDNLERARARCSESVKGVSA 263
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
++ ++ + K +V HNSL D +++ F + LP N F FP+++D L
Sbjct: 264 ILQVVHMTGKLVVGHNSLLDAMYMYHYFFSHLPANYQMFKDKFNALFPRIMDTKLL 319
>gi|443698080|gb|ELT98249.1| hypothetical protein CAPTEDRAFT_110937 [Capitella teleta]
Length = 121
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 36 NFNESLSEIKNHISSSDFIAVSLQNTG-------------SFSSPWHRVSTFDTPETAYL 82
+F ESL I I + F+++ + TG F S W DTPE Y
Sbjct: 12 DFKESLPLISQAIQDASFVSIDCEMTGDSLLTSLLCLIQSGFESHW-----MDTPEDRYN 66
Query: 83 KAKFAAERFQILQFAICPF--KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQ 135
K + A F ++QF +C F K + + + +NF++FPR + FTCQ
Sbjct: 67 KLRQGAMPFNVIQFGLCTFNKKEDSKQYSVHAFNFYIFPR-PVNSDATDVRFTCQ 120
>gi|229593727|ref|XP_001026894.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|225567345|gb|EAS06649.2| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 1272
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 31 QITKTNFNESLSEIKNHISS--SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAA 88
Q+TK NF +S + ++S ++FI+ + TG ++ + S D P Y K A
Sbjct: 2 QVTKQNFEQSFQIFSDLVNSPKTEFISYDFEMTGIRTT--EKESYNDMPFERYEKCAQVA 59
Query: 89 ERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSY--SFTCQTSYLTAMAKEG 146
++ ++Q + F + SK AYP+N ++ R K+ SY ++ + A+ G
Sbjct: 60 RKYALIQAGLTVFHKEDSKYTAYPFNAYVIRR---KIENTSYKPEVVLESGAIKFNAEHG 116
Query: 147 FDFNTCIYDGISYLSEAQESTV--KVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSR 204
DF+ I + ++++ Q + + +V N ++ K+ +S S+ T F E V R
Sbjct: 117 CDFDQWIKNSVTHIDREQYANLLKEVEQKNDLSQAERNKAINSIHQSLGFTKFFELVGKR 176
>gi|89273974|emb|CAJ81781.1| Novel protein similar to poly(A)-specific ribonuclease
(deadenylation nuclease) [Xenopus (Silurana) tropicalis]
Length = 424
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 289 DEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 348
+E++ ++++ Q E E+ GF +I IS+S K +V HN L D +F LP
Sbjct: 37 EEERKRMEQQKQAKEREELDDAVGFSRIIQAISSSGKLVVGHNMLLDIMHTIHQFFCQLP 96
Query: 349 PNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF 395
+NEF FP+V+D L+ P K++ + ++A L+ R
Sbjct: 97 DELNEFKEVTNCVFPRVLDTK-LMASTNPFKEII-YNTSLAELEKRL 141
>gi|302855310|ref|XP_002959151.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
gi|300255470|gb|EFJ39774.1| hypothetical protein VOLCADRAFT_108501 [Volvox carteri f.
nagariensis]
Length = 987
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFA 87
P +T+ NF L ++ +++S DF A + TG F + D + Y + A
Sbjct: 260 PAVDVTRHNFEVMLPMVRRYLASCDFFAFDCEMTGLFLD-GQTENYLDDMQDRYTRTAAA 318
Query: 88 AERFQILQFAICPFKLQA-------SKVIAYPYNFHLFPR-DELKMGMPSYSFTCQTSYL 139
A+ F I QF + F+ Q ++ +A +NF+LFPR E S F C L
Sbjct: 319 AQSFIITQFGLSCFRRQPEPGPGGEARYLAATFNFYLFPRPPEGAAFGSSRRFLCDAGSL 378
Query: 140 TAMAKE 145
+ +A +
Sbjct: 379 SFLASQ 384
>gi|440639009|gb|ELR08928.1| hypothetical protein GMDG_03595 [Geomyces destructans 20631-21]
Length = 576
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 19/194 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTG----SFSSPWHRVSTFDTP--ETAYLKA 84
++ + +F L I IS++ F+ V ++ +G S SP R + P + Y
Sbjct: 2 EVDQQHFWHELLPILKAISTASFVTVDVEMSGISTKSRYSPSGRFNETGKPSLQQQYEDT 61
Query: 85 KFAAERFQILQFAICPFK--LQASKVIAYPYNFHLFPRDELKMGMPSY-SFTCQTSYLTA 141
K AAER+Q+LQ + + + A PYNF++ P E + Y T +S +
Sbjct: 62 KEAAERYQVLQIGLTCVEEDWKNGVYTARPYNFNINPLLEDGDKLAIYRDITLSSSSMHF 121
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSV--ADTV--- 196
+ K FD GISY+S +++ + ++ ++S+ P + + D V
Sbjct: 122 LRKNCFDIGAVFTKGISYISRKEQTQARQAF-----LERQNRNSTIPDIKIGPGDQVTLD 176
Query: 197 FIERVRSRVKHWKN 210
F R ++ W +
Sbjct: 177 FYRNARRQLLEWTD 190
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL--KDIGP 377
++A + LV HN D F++ F+ LPP + EF + FP VID Y+ +
Sbjct: 320 LAAKSRVLVGHNLFTDLIFLYHTFIGILPPTVTEFQEKIHALFPMVIDTKYMATRDKLID 379
Query: 378 VKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH--GHNVVKICQLFGKLCSILKI 435
++ +++ +K++ I + ++ +N ++H G++ Q+F KL + L +
Sbjct: 380 ARQSSSLQDLHQDVKSQHIPEICLPEEFRSYQNRHQLHEAGYDSYLTAQIFLKLAAKLDV 439
>gi|194389110|dbj|BAG61572.1| unnamed protein product [Homo sapiens]
Length = 464
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 339
R ++ S ++++ +RE Q EQ + GF VI I+ S K ++ HN L D
Sbjct: 62 RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHT 121
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF---- 395
+F PLP +++EF FP+++D L+ P K + N + ++A L+ R
Sbjct: 122 VHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETP 179
Query: 396 FAPIEME 402
F P ++E
Sbjct: 180 FNPPKVE 186
>gi|324507288|gb|ADY43094.1| Poly(A)-specific ribonuclease PARN [Ascaris suum]
Length = 616
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFS-SPWHRVSTFDTPETAYLKAKFAAER 90
+T NF + L +I N + ++ F+A L+ G +R S FD+P Y K + + +
Sbjct: 3 VTDDNFAQQLPQILNTVQNASFVAFDLEFLGFHGDDEANRPSLFDSPVERYRKQRLSVLK 62
Query: 91 FQILQFAICPFKL----QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F +Q+ + F + KV YN +LF R + +SF+ + + + +
Sbjct: 63 FPPVQWGLALFTAIDDGRHYKVDV--YNIYLFKR---TINRRVFSFSIPS--IAFLGEHD 115
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN I G++Y + + ST++
Sbjct: 116 FDFNKAINKGVTYANLDEISTIR 138
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
+ G +++ I ++ P+V HN L D +I+ F A LP + ++ +L FP +ID
Sbjct: 276 IAGASQILYAIIDARLPVVGHNCLFDLLYIYQYFFADLPEDYAKWKKALNTIFPVIIDTR 335
Query: 370 YLLKD 374
L ++
Sbjct: 336 ILAEE 340
>gi|301108964|ref|XP_002903563.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097287|gb|EEY55339.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 456
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 291 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 350
D+ L E++ E+N + GF V+D+I A++KP+V HN L D + KF PLP
Sbjct: 87 DEQLADDEIR----ERNLSLIGFTAVLDVIVAARKPIVGHNMLLDLMQCYEKFHGPLPGR 142
Query: 351 MNEF 354
+EF
Sbjct: 143 CSEF 146
>gi|349605143|gb|AEQ00478.1| Poly(A)-specific ribonuclease PARN-like protein, partial [Equus
caballus]
Length = 376
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L
Sbjct: 8 GFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-L 66
Query: 372 LKDIGPVKKMTNISATIAYLKNRF----FAPIEME 402
+ P K + N + ++A L+ R F P ++E
Sbjct: 67 MASTQPFKDIIN-NTSLAELEKRLKETPFNPPKVE 100
>gi|330840342|ref|XP_003292176.1| hypothetical protein DICPUDRAFT_156861 [Dictyostelium purpureum]
gi|325077597|gb|EGC31299.1| hypothetical protein DICPUDRAFT_156861 [Dictyostelium purpureum]
Length = 526
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+I+ Q P++ HN + D FI +A LP +N+FI L FP++ D Y+
Sbjct: 254 IIAKYQLPVIIHNGIFDLLFIFQSLIADLPDKLNDFIVKLVTVFPKIYDTKYI 306
>gi|148664947|gb|EDK97363.1| poly(A)-specific ribonuclease (deadenylation nuclease), isoform
CRA_b [Mus musculus]
Length = 426
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 301 TFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRL 360
T E E+ GF VI I+ S K +V HN L D +F PLP ++NEF
Sbjct: 67 TKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAIC 126
Query: 361 AFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRF----FAPIEME 402
FP+++D L+ P K + N + ++A L+ R F P ++E
Sbjct: 127 VFPRLLDTK-LMASTQPFKDIIN-NTSLAELEKRLKETPFDPPKVE 170
>gi|342184465|emb|CCC93947.1| putative ribonuclease [Trypanosoma congolense IL3000]
Length = 510
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 143/402 (35%), Gaps = 67/402 (16%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
++K N +E ++ ++ + DF A+ + TG ++ T Y ++ R
Sbjct: 2 DVSKFNCSEIFNDFRDSMEKCDFFALDQEMTGVNHLERPQLKTM-CLNDLYAISREVVSR 60
Query: 91 FQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFN 150
+ Q + FK K YNF L + F TS L + G +F
Sbjct: 61 YVAFQLGVSIFKRVGDKYEVRAYNFFLLKDNG--------DFAVDTSALKFLLNNGMNFQ 112
Query: 151 TCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKN 210
+ G+ Y G P H K+ ALS+AD + S VKH +
Sbjct: 113 KWLTTGMPY--------GDTNGGAP----HRGKTPC--ALSLADIL----SNSLVKHIRK 154
Query: 211 ACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 270
DS + + +T LR I+ + +T+ ++ + ++ + S
Sbjct: 155 WYNDSPVCNDDCLT-LRAII-----YEEVEQLTLSKLRNERIYIAMEYDKSLS------- 201
Query: 271 IPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFE---FEQNKRVRGFREVIDLISASQKPL 327
++T + LK E E + GF+ + +KPL
Sbjct: 202 --------MGTSVLVTVRRMEPGALKEETTRLEDPTASETGMAEGFQPFWKCLIKYKKPL 253
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISAT 387
V HN D F+ PLP + + + + FP + D L + + VK+ S
Sbjct: 254 VGHNFWLDIMFLVQMHAGPLPDDYDAYKKLVNYHFPVIYDTKTLGRQL--VKRSPLESFC 311
Query: 388 IAYLKNR-------------FFAPIEMEIPN-QANENEGKIH 415
+ L +R F +P E + N + +E K+H
Sbjct: 312 LKDLYDRAIALNKSLPKPLEFISPPEFNLYNTEVDECSCKVH 353
>gi|444727164|gb|ELW67669.1| Poly(A)-specific ribonuclease PARN [Tupaia chinensis]
Length = 642
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 109 IAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTV 168
I +NF++FP+ P F CQ+S + +A +GFDFN +GI YL++ +E +
Sbjct: 46 ITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQL 104
Query: 169 K 169
+
Sbjct: 105 R 105
>gi|187607044|ref|NP_001120127.1| target of EGR1, member 1 (nuclear) [Xenopus (Silurana) tropicalis]
gi|166796163|gb|AAI59038.1| LOC100145153 protein [Xenopus (Silurana) tropicalis]
Length = 513
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DV 368
V+G R + + ++KPL+ HN L D F++ F A LP N+ FI L FP I D
Sbjct: 142 VKGIRTLFLELLRARKPLILHNGLIDLAFLYQCFYAQLPDNLGSFIADLSEMFPAGIYDT 201
Query: 369 NYL 371
Y+
Sbjct: 202 KYV 204
>gi|345305348|ref|XP_001505796.2| PREDICTED: poly(A)-specific ribonuclease PARN-like [Ornithorhynchus
anatinus]
Length = 392
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L
Sbjct: 25 GFSRVIHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPEDLNEFKEVTACVFPRLLDTK-L 83
Query: 372 LKDIGPVKKMTNISATIAYLKNRFFA 397
+ P K++ N + ++A L+ R A
Sbjct: 84 MASTQPFKEIIN-NTSLAELEKRLKA 108
>gi|255956365|ref|XP_002568935.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590646|emb|CAP96841.1| Pc21g19440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 542
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T NF E L + N IS+S F+++ + +G P S T + Y++AK AAER+
Sbjct: 3 VTAVNFPECLPFMLNDISTSCFVSIDFELSGVVFKPGTPQSRPQTVQERYVEAKAAAERY 62
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNT 151
QILQ + V + + + RD +T + + + F +
Sbjct: 63 QILQVGLTTCHEDKENVTQHEMDVN---RD----------WTFGSRSMEFLLANHFSIDH 109
Query: 152 CIYDGISYLSEAQESTVKVRMGNPMAVDHAT-KSSSSPALSVADTV--------FIERVR 202
G+ YLS +E +A+ AT K S + VAD F+E VR
Sbjct: 110 MCTFGVRYLSREEEK---------LAIKRATEKCLSRHPVQVADIKKDDHESLEFLEAVR 160
Query: 203 SRVKHW 208
+ W
Sbjct: 161 VSINEW 166
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL-LK 373
+V + + S+ LV HN D F + FL PLP + EF + FP + D Y+
Sbjct: 296 KVKNRLKESRPVLVGHNMFCDLLFFYRCFLGPLPDTLAEFQTVIHDLFPVLADTKYMATH 355
Query: 374 DIG---PVKKMTNISATIAYLKN 393
D G P+ + ++ T+A +++
Sbjct: 356 DCGSLNPMSSLEELNTTLAGIES 378
>gi|440469932|gb|ELQ39023.1| hypothetical protein OOU_Y34scaffold00516g58 [Magnaporthe oryzae
Y34]
gi|440483021|gb|ELQ63464.1| hypothetical protein OOW_P131scaffold00982g62 [Magnaporthe oryzae
P131]
Length = 582
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 100/411 (24%), Positives = 150/411 (36%), Gaps = 107/411 (26%)
Query: 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTG-----SFSSPWHRVSTFDTPETAYLK 83
I I TNF L ++ I+ +++++ L+ TG S + S E Y
Sbjct: 16 IIDIDATNFWRLLPQVLEEIAGAEYVSFDLEMTGIRVKNGLSDRQDKFSV----EEYYAA 71
Query: 84 AKFAAERFQILQFAICPFKLQASKVIAY---PYNFHLFP------RDELKMGM---PSYS 131
A A+ FQI++F + K K +Y YNF L P R L + Y+
Sbjct: 72 ACEVAQTFQIIEFGMSCSKYDTEKR-SYGWTAYNFRLAPWYLGDNRTHLALAKFFDRRYT 130
Query: 132 FTCQTSYLTAMAKEGFDFNT-CIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPAL 190
+ S+ G D + + GI YLS + D A K P
Sbjct: 131 LS-SNSFRFLRGNRGDDITSLALESGIMYLSRQE-------------ADEAYKYFIDPDK 176
Query: 191 SVADTV-----------FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSR 239
V + + F + VRS + W ++ + L GGE
Sbjct: 177 KVRNLIDLNKENLEANLFYDWVRSAITLW--------LQDPHKLEWLNIENPGGESL--- 225
Query: 240 PSMTIDVCSERQVQLVLKMLE-DFS-DVL--VP------LIIPAKGGGTQAVRAVLTSSD 289
+ Q +LV ++LE +FS D L VP + I KG A+L
Sbjct: 226 --------TNLQRRLVYQILESEFSHDCLRAVPKCKNDFMQITQKGVNAAEETAILQRMI 277
Query: 290 EDKDLLKRELQTFEFEQNKRVRG-FREVIDL------------------------ISASQ 324
E K + RE F F V G F + ID+ I A
Sbjct: 278 ERKAAI-REQTGFRFVFEALVGGDFADDIDIGLLLTPEEYHIKGSAADLRAKLLAIEAKA 336
Query: 325 KP----LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
K +V HNSL D FI++ F+ LP ++ +F +R FP+ +D Y+
Sbjct: 337 KENSRVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYM 387
>gi|432956699|ref|XP_004085743.1| PREDICTED: poly(A)-specific ribonuclease PARN-like, partial
[Oryzias latipes]
Length = 542
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 282 RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFI 339
R + S ++++ +RE Q E EQ + GF VI IS S K +V HN L D
Sbjct: 109 RFIQVSKVDEEERKRREQQKLEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHT 168
Query: 340 HSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTN 383
+F LP ++ +F FP+++D L+ P K++ N
Sbjct: 169 IHQFYCSLPEDLQDFKEVTMCVFPRLLDTK-LMASTQPFKELIN 211
>gi|66820356|ref|XP_643803.1| hypothetical protein DDB_G0275089 [Dictyostelium discoideum AX4]
gi|60471871|gb|EAL69825.1| hypothetical protein DDB_G0275089 [Dictyostelium discoideum AX4]
Length = 559
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVN 369
+R + ++D+++ +Q P V HN + D FI + LP +N+FI + FP++ D
Sbjct: 262 LRRSKLLLDILTKAQLPSVIHNGIFDLLFIFQSLIGDLPDKLNDFISKILSVFPKIYDTK 321
Query: 370 YL 371
Y+
Sbjct: 322 YI 323
>gi|349806239|gb|AEQ18592.1| putative protein polyA-specific ribonuclease (deadenylation
nuclease) [Hymenochirus curtipes]
Length = 188
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF +I IS S K +V HN L D +F LP ++NEF FP+V+D L
Sbjct: 19 GFSRIIQAISTSGKLVVGHNMLLDVMHTIHQFFCQLPDDLNEFKEVTNCVFPRVLDTK-L 77
Query: 372 LKDIGPVKKM---TNISATIAYLKNRFFAP 398
+ P K++ T+++ LK+ F P
Sbjct: 78 MASTNPFKEIIYNTSLAELEKRLKDSPFKP 107
>gi|260810923|ref|XP_002600172.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
gi|229285458|gb|EEN56184.1| hypothetical protein BRAFLDRAFT_66680 [Branchiostoma floridae]
Length = 441
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 91/239 (38%), Gaps = 52/239 (21%)
Query: 142 MAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERV 201
+ FDFN +Y+G+ YL + QE ++ + + +S P + ++
Sbjct: 58 LCDHNFDFNEFVYEGVPYLDQDQEKHLRKHL----------EQTSWPTAGGSQQDQVQLC 107
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLED 261
S V W + D TE + S + G +F L+ + L
Sbjct: 108 CSTVSQWLSNGGD----TELNIPSPK----GPSRF-----------------LIHRALR- 141
Query: 262 FSDVLVPLIIPAKGGGTQ-AVRAV----LTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 316
P + +Q AVR V +E DL R L + GF V
Sbjct: 142 ---TRFPEVWTYDAANSQLAVRKVSEEKRKEEEEKDDLADRALDY--------MLGFSHV 190
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
++ ++KP+V HN L D ++ K PLP ++F + + FP + D ++ ++
Sbjct: 191 FRTLTQTRKPVVGHNMLMDLMLLYGKMYKPLPEKYDQFKRDIHVLFPCIYDTKHIAAEL 249
>gi|157869668|ref|XP_001683385.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126450|emb|CAJ04256.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 598
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GFR V + S+KP V HN D+ F+ S LP + ++ R FP + D YL
Sbjct: 299 GFRLVFTELVKSRKPCVGHNCFADWLFLMSAMDGALPEQLPQWKARTRELFPCIWDTRYL 358
Query: 372 L--KDIGPVKKMTNIS 385
+D+ P + +IS
Sbjct: 359 ASRRDLFPSGRFGSIS 374
>gi|348669379|gb|EGZ09202.1| hypothetical protein PHYSODRAFT_525456 [Phytophthora sojae]
Length = 465
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 291 DKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPN 350
D+ L E++ E+N + GF V+D I A++KP+V HN L D + KF PLP
Sbjct: 87 DQQLADDEMR----ERNLSLIGFTAVLDAIVAARKPIVGHNMLLDLMQCYEKFHGPLPAR 142
Query: 351 MNEF 354
EF
Sbjct: 143 CAEF 146
>gi|242761628|ref|XP_002340217.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
gi|218723413|gb|EED22830.1| CAF1 family ribonuclease, putative [Talaromyces stipitatus ATCC
10500]
Length = 536
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 83/384 (21%), Positives = 141/384 (36%), Gaps = 58/384 (15%)
Query: 41 LSEIKNHISSSDFIAVSLQNTGSFSSPWHRV-STFDTPETAYLKAKFAAERFQILQFAIC 99
L I IS F+A+ + +G P H+ S + + Y + K AA+ +QILQ +
Sbjct: 17 LPGILRDISECAFVALDFEFSGI---PSHQAGSRPQSLQERYAEVKEAAKTYQILQVGLT 73
Query: 100 PFK----LQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYD 155
K + K P+N L P + + + +F ++ + +AK GF+ +
Sbjct: 74 IVKEDVLREKGKYTVKPFNIPLSPWIDPSLHV-DRTFGLSSNAIHFLAKIGFNLGETCEN 132
Query: 156 GISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVAD---TVFIERVRSRVKHWKNAC 212
G+ YLS+ + + T + LS D F+ +R ++ W NA
Sbjct: 133 GVPYLSKKEVDEILDEARRFHGSRWQTAKRAQIILSDDDIESAAFLAGIRKDIEEWLNAD 192
Query: 213 TDSD--IKTEAL----VTSLRKIVLGGEQFGSRPSMT-------IDVCSERQVQLVLKML 259
D + AL T K ++ PS+T I + + + K
Sbjct: 193 WDKPDYLHVPALNGHAFTRFEKRLIHQLVETEYPSLTSIRSGESIKIVKYDEAKEHKKYE 252
Query: 260 EDFSDVLVPLI--------IPAKGGG------TQAVRAVLTSSDEDKDLLKRELQTFEFE 305
S V LI I A GG +Q ++ D + K ++ T
Sbjct: 253 GKMSRVQQRLIDHRGFAWVIEALAGGDLSQMTSQMFEPLVIGEGPDAEYHKTQIITKLKA 312
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
+N ++ +V HN D T++ F LP + +F L FP +
Sbjct: 313 RNGQI---------------AIVGHNLFMDVTYLWQCFYGDLPDRVEDFAQLLHEKFPML 357
Query: 366 IDVNYLLK----DIGPVKKMTNIS 385
ID Y+ D+ P + I+
Sbjct: 358 IDTKYIFTHDCGDMNPAATLEKIA 381
>gi|389630114|ref|XP_003712710.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
gi|351645042|gb|EHA52903.1| hypothetical protein MGG_05172 [Magnaporthe oryzae 70-15]
Length = 426
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ +V HNSL D FI++ F+ LP ++ +F +R FP+ +D Y+
Sbjct: 326 RVIVGHNSLFDLCFIYNSFIGTLPTSLQQFKIDIRAMFPRYVDTKYM 372
>gi|405977745|gb|EKC42179.1| Target of EGR1 protein 1 [Crassostrea gigas]
Length = 319
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNYL 371
R ++ S+KP+V HN+L D +++ F A LPP M+ FI L F V D Y+
Sbjct: 172 LRSFFTVLVKSRKPVVFHNALTDLVYLYQNFYASLPPTMSSFIADLTEIFEGGVYDTKYI 231
>gi|71031200|ref|XP_765242.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352198|gb|EAN32959.1| hypothetical protein, conserved [Theileria parva]
Length = 624
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 20/119 (16%)
Query: 307 NKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
NK++ G R + D +S + K LV HN D I+ F LP N+ +F FP +
Sbjct: 349 NKQI-GLRTLFDTVSKNNKILVGHNCFYDILHIYQTFYGDLPENVEDFKKKWVQVFPTIF 407
Query: 367 DVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQL 425
D Y+ + T T+ L N F +PNQ +G N VKI L
Sbjct: 408 DTKYISEYYHQFTPHT----TLKSLYNSF-------LPNQ--------NGFNRVKISSL 447
>gi|74137718|dbj|BAE24048.1| unnamed protein product [Mus musculus]
Length = 189
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 104 QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEA 163
+++K +A+ NF LFP G+ F+ Q S + + + GFD+N + +GI Y++E
Sbjct: 8 ESNKYVAHSCNFFLFP---TTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEE 64
Query: 164 QESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKT 219
QE +K H+ + S D I+ V +V W + + D T
Sbjct: 65 QEKKIK----------HSILRGNWRVRSSLDKDQIKVVIDKVTQWLDLAEEGDQMT 110
>gi|407849616|gb|EKG04306.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 487
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 108/288 (37%), Gaps = 44/288 (15%)
Query: 90 RFQILQFAICPF-KLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFD 148
R+ QF I F +L++ A PYNF+L F T + + D
Sbjct: 30 RYIAFQFGITLFTRLKSGGYEAKPYNFYLLKEHS--------DFGVNTDAIKFLVAHKLD 81
Query: 149 FNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHW 208
F + G+ Y ++ +E + NP ++ K VF V + +K W
Sbjct: 82 FQKWLAFGMHYCNKEEEGRFTTKKENPSYLELKEK-----------IVF--HVVNEIKKW 128
Query: 209 KNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVP 268
K E + SL+ ++ G + ++ I E+ + + L ++ ++
Sbjct: 129 ----YLDPYKKEEEILSLKTVMTKGIE-----ALVISTLKEQDIYVNL----EYDEISKL 175
Query: 269 LIIPAKGGGTQAVRAVLTSSDEDK-DLLKRELQTFEFEQNKRVRGFREVIDLISASQKPL 327
+P V+ + D +K DL + GFR++ ++ +KP+
Sbjct: 176 YELP--------VQLTVHRVDRNKLDLEGEKTAVNSASVFSEKLGFRQIWKCLTKCKKPI 227
Query: 328 VAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
+ HN D F+ APLP +F + FP + D L K +
Sbjct: 228 IGHNFWLDIMFMLHMHEAPLPTMYEDFKKQVYELFPCIYDTKTLSKSM 275
>gi|91090816|ref|XP_971302.1| PREDICTED: similar to Poly(A)-specific ribonuclease PARN-like
domain-containing protein 1 [Tribolium castaneum]
Length = 510
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID---V 368
GF+ V D ++A +KP+V HN L D + + F LP + ++ FP + D +
Sbjct: 255 GFKHVFDTLTALKKPIVGHNVLQDLMIMINNFENALPESYLQYKALAHQLFPTIFDTKTI 314
Query: 369 NYLLKDIGPVKKM---TNISATIAYLKN 393
Y L+ P +K+ T++SA Y +
Sbjct: 315 YYELRATIPREKLPDDTSLSALFDYFRG 342
>gi|452823525|gb|EME30535.1| nucleotidyltransferase [Galdieria sulphuraria]
Length = 1412
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
++ I+ S+ PLV + L D ++ F APLP ++ F+ L L P+V D+ L++D
Sbjct: 267 LLRYIAESRVPLVVFDGLVDLMALYHAFHAPLPKRLDSFLVQLSLLLPRVYDIRCLIED 325
>gi|407408061|gb|EKF31630.1| ribonuclease, putative [Trypanosoma cruzi marinkellei]
Length = 649
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 305 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
E++ R G R + L++A+ +K LV HN L+D F+++ LP + EF S+R
Sbjct: 374 EKDARYFGTRLLEALVTATRCWKKILVIHNGLSDLAFLYAAMHQQLPKTLGEFKRSIRDM 433
Query: 362 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 396
FP D + + + NI A LK +F
Sbjct: 434 FPFFFDT----RTLTCAPSLQNIGMLTATLKKTYF 464
>gi|407860775|gb|EKG07489.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 305 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
E+N R G R + L++A+ +K LV HN L+D F+ + P P + EF ++R
Sbjct: 358 EKNPRYFGTRLLETLVTATRCWKKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREM 417
Query: 362 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 396
FP D + + + NI A LK +F
Sbjct: 418 FPFFFDT----RTLTCAPSLQNIGILTATLKKTYF 448
>gi|346472889|gb|AEO36289.1| hypothetical protein [Amblyomma maculatum]
Length = 450
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP- 363
+ ++ R++ L+ +KP+V HN D F++ F LPP + F+ L FP
Sbjct: 143 QSEEKAHSLRKLFSLLVVHRKPIVFHNGFMDTVFLYHSFYLALPPTLQTFLADLNELFPS 202
Query: 364 QVIDVNYL 371
+V D ++
Sbjct: 203 RVYDTKFI 210
>gi|449017212|dbj|BAM80614.1| hypothetical protein CYME_CMK272C [Cyanidioschyzon merolae strain
10D]
Length = 1647
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
++ +++ S PLV + L + ++ F APLPP+++ FI +L + P+V+DV +
Sbjct: 385 QLFRMLAESGVPLVFFDGLFEIMSMYEAFYAPLPPDLDAFIATLGIVTPRVVDVRCM 441
>gi|367049582|ref|XP_003655170.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
gi|347002434|gb|AEO68834.1| hypothetical protein THITE_155482 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTF--DTPETAYLKAKFAAE 89
I ++NF ++L + IS S+++A+ L+ TG H V T +T TAY A AA
Sbjct: 3 INRSNFWQTLPTVLEAISLSEYVAIDLEMTGVSG---HAVDTAPENTEITAYQLAAEAAR 59
Query: 90 RFQILQFAIC--PFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFT------CQTSY--L 139
FQ+LQF + + + + + + FHL P + PS + SY
Sbjct: 60 TFQVLQFGMTCLSYDDEQNGYQSKTFTFHLTP----EFAPPSTALAKLIDRKVVLSYRSF 115
Query: 140 TAMAKEGFDFNTCIYDGISYLSEAQES 166
+ + F F G+ YLS + +
Sbjct: 116 LFLKENNFSFEKAFSQGVPYLSRPESA 142
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 308 KRVRGFREVIDL------ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
+R R R +DL I + +V HN D FI FL PLP ++ F +
Sbjct: 301 RRSRIARLHVDLRLYEGRIKQRRPVIVGHNPFLDLCFIQETFLRPLPDDVAAFRRDMGEF 360
Query: 362 FPQVIDVNYLLKDIG 376
FP+V+D YL +G
Sbjct: 361 FPRVVDTKYLSSQLG 375
>gi|294934752|ref|XP_002781223.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
gi|239891558|gb|EER13018.1| hypothetical protein Pmar_PMAR019548 [Perkinsus marinus ATCC 50983]
Length = 672
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 29/164 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERF 91
+T+ N+ + + I DF+ + + TG S R D AY A F
Sbjct: 30 VTRHNWEKLRPVLLQEIEKCDFLTIDFELTGLLLSQEDRHIGLDKVYDAYCSG---ARHF 86
Query: 92 QILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMP----------------------- 128
LQ +C P++ +++P+ + P
Sbjct: 87 MPLQMGLCAVTRHDRGWRLAPFSVYMWPQRSATVNRPAVLQATANGSSSSASTSTGHGGD 146
Query: 129 ---SYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVK 169
S +F + + +++ GFD N CI +G+ +L QE K
Sbjct: 147 SPDSDAFMVSVTAMNFLSEAGFDLNECIKNGVGWLRPEQERAKK 190
>gi|347840116|emb|CCD54688.1| hypothetical protein [Botryotinia fuckeliana]
Length = 354
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+VI + Q +V HN D F++ F+ LP + +F + FP VID YL
Sbjct: 65 KVIKKLKEKQHVIVGHNLFTDLCFLYKTFIGDLPAGVGDFQSQIHSLFPFVIDTKYL 121
>gi|327270964|ref|XP_003220258.1| PREDICTED: target of EGR1 protein 1-like [Anolis carolinensis]
Length = 538
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
+++ VR F ++LI A +KPL+ HN L D F++ F A LP N+ F L FP
Sbjct: 141 ESQTVRTF--FLELIRA-RKPLILHNGLIDLVFLYQCFYAQLPDNLGTFTGDLSEMFPAG 197
Query: 366 I-DVNY 370
I D Y
Sbjct: 198 IYDTKY 203
>gi|154276184|ref|XP_001538937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414010|gb|EDN09375.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 421
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 44/205 (21%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG-----SFSSP----WHRVSTFDTPETAYL 82
+TK +F++ L + N ++ S F+A+ L+ +G S SP W T + Y
Sbjct: 3 VTKQSFSQHLPRLLNDLAESTFVALDLEFSGIVARQSGPSPGSDLWGEKQTL---QERYE 59
Query: 83 KAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAM 142
+ K+AAE +Q+LQ + F R++ + G S Q + L +
Sbjct: 60 EVKYAAETYQVLQIGLT------------------FAREDTETGQ---SDRVQLTKLWGL 98
Query: 143 A-----------KEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALS 191
K GF +G+ YLS +E ++ + +
Sbjct: 99 KDDGRIKAVFLMKNGFRMEAPFVEGLPYLSRLEEKQAMAKLAESEHSITKIMDVNPKDMD 158
Query: 192 VADTVFIERVRSRVKHWKNACTDSD 216
F+ +VR + W N D +
Sbjct: 159 PESQAFLTQVRRLIDAWINETGDKE 183
>gi|348669380|gb|EGZ09203.1| hypothetical protein PHYSODRAFT_423896 [Phytophthora sojae]
Length = 243
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 85/218 (38%), Gaps = 35/218 (16%)
Query: 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAIC 99
+L ++ +S S F+A+ + G R S D+ + + + + +A +F ++QF +
Sbjct: 23 ALGRLQRVVSRSAFVAIDTEMGGVSCHDTPRPSVMDSIDERFAQYRESARQFPLVQFGLS 82
Query: 100 PFKLQASKVI--AYPYNFHLFPRDELKM-------------------GMPSYSFTCQTSY 138
F A + Y F LFP K+ P F Q
Sbjct: 83 VFLWDADARVFRVETYQFPLFPVFHEKVFGHGSSSNAANGSAGAGASACPDRRFLVQAKC 142
Query: 139 LTAMAKEGFDFNTCIYDGISYLS--EAQESTVKVRMGNPMAVDHATK-SSSSPALSVADT 195
L + GFD N I GI +LS E Q+ K + + K PAL +T
Sbjct: 143 LQYIRAHGFDLNAWIDRGIGHLSHHEQQQEPCKSALERSARPEILRKFDPQQPALITDET 202
Query: 196 -VFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLG 232
F++++ +++K A D+ R+IV+G
Sbjct: 203 QAFLDQLAAKLKQRLAAFDDAG----------REIVVG 230
>gi|449017190|dbj|BAM80592.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 622
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
V+ ++ S KP++ HN L D + + F APLPP++ EF L P +L +
Sbjct: 233 VLSVLLGSGKPVIFHNGLYDLLLMFAAFEAPLPPSVEEFRTQLATRCPGYFFDTRVLGEF 292
Query: 376 GPVKKMTNISATIAYLKNRF 395
P ++ + A + Y+ ++
Sbjct: 293 VPA-RLRDCPAYLEYVFRKY 311
>gi|118094556|ref|XP_422434.2| PREDICTED: target of EGR1 protein 1 [Gallus gallus]
Length = 534
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR F ++LI A +KPL+ HN L D F++ F A LP ++ F L FP
Sbjct: 141 QSQSVRTF--FLELIRA-KKPLILHNGLIDLVFLYQCFYAHLPDSLGTFTSDLSEMFPAG 197
Query: 366 I-DVNY 370
I D Y
Sbjct: 198 IYDTKY 203
>gi|18605651|gb|AAH23109.1| Target of EGR1, member 1 (nuclear) [Mus musculus]
Length = 511
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|344239262|gb|EGV95365.1| Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
[Cricetulus griseus]
Length = 74
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 319 LISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
++ +QK LV HN + D + KF PLP + +EF ++ FP +ID + +DI
Sbjct: 1 MLVRAQKSLVGHNMMMDLLHLLEKFFKPLPESYDEFKQNIHSLFPVIIDTKNVTEDI 57
>gi|21311839|ref|NP_080930.1| target of EGR1 protein 1 [Mus musculus]
gi|81904848|sp|Q9D2E2.1|TOE1_MOUSE RecName: Full=Target of EGR1 protein 1
gi|12860185|dbj|BAB31871.1| unnamed protein product [Mus musculus]
gi|26338213|dbj|BAC32792.1| unnamed protein product [Mus musculus]
gi|26350157|dbj|BAC38718.1| unnamed protein product [Mus musculus]
gi|148698640|gb|EDL30587.1| target of EGR1, member 1 (nuclear), isoform CRA_d [Mus musculus]
Length = 511
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|432915315|ref|XP_004079174.1| PREDICTED: target of EGR1 protein 1-like [Oryzias latipes]
Length = 539
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 381
++KPLV HN L D F++ F A LP + F L FP I D Y+ +
Sbjct: 157 ARKPLVLHNGLIDMAFLYQSFYAHLPERLATFTADLSDMFPAGIYDTKYITE-------- 208
Query: 382 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKL 429
+ T +YL+ +A + ++ N + G H + CQ G +
Sbjct: 209 FELRLTASYLE---YAYKKCKLDNSRGVSSGAPGPHLHIGFCQYAGHM 253
>gi|260818111|ref|XP_002603928.1| hypothetical protein BRAFLDRAFT_287482 [Branchiostoma floridae]
gi|229289252|gb|EEN59939.1| hypothetical protein BRAFLDRAFT_287482 [Branchiostoma floridae]
Length = 463
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
R++ + S+ PL+ HN L D F++ F LPP + F+ L FP I
Sbjct: 150 RQLFSELVCSRVPLILHNGLVDLVFLYQSFYTELPPTLGSFLADLSEMFPAGI 202
>gi|157821287|ref|NP_001100150.1| target of EGR1 protein 1 [Rattus norvegicus]
gi|149035569|gb|EDL90250.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_c
[Rattus norvegicus]
Length = 393
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|116207778|ref|XP_001229698.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
gi|88183779|gb|EAQ91247.1| hypothetical protein CHGG_03182 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG--P 377
+ A + L+ HN D F+H FL PLP + F + FP++ID +L +G P
Sbjct: 177 LRAHRPILIGHNPFLDLCFLHETFLQPLPADALAFRRATHRFFPRIIDTKHLACQLGWKP 236
Query: 378 VKKMTNISATI 388
+ + + A +
Sbjct: 237 SRNLAQLYADL 247
>gi|328870381|gb|EGG18755.1| hypothetical protein DFA_02494 [Dictyostelium fasciculatum]
Length = 515
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNY-LLK 373
++I ++ LV HN L D FI+ F+ LP + FI + FP++ +NY LK
Sbjct: 288 KIISSLTKYSPTLVVHNGLFDLLFIYQSFIGDLPEQLASFISQFLITFPKIERINYKRLK 347
Query: 374 D 374
D
Sbjct: 348 D 348
>gi|149035571|gb|EDL90252.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_e
[Rattus norvegicus]
Length = 504
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|83771094|dbj|BAE61226.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871094|gb|EIT80260.1| hypothetical protein Ao3042_03277 [Aspergillus oryzae 3.042]
Length = 205
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 305 EQNKRVRGFREVIDLISASQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
E + GF E + + +P LV HN D +++ F PLP + EF + FP
Sbjct: 95 EPQVSLHGFSEKLQQRLRTHRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFP 154
Query: 364 QVIDVNYLLK----DIGPVKKMTNISATIAYLKN 393
++D Y+ I P ++ I+ + ++K
Sbjct: 155 ILMDTKYMATHDCGSITPKSSLSEINDNLLHIKT 188
>gi|375493522|ref|NP_001243611.1| target of EGR1 protein 1 [Danio rerio]
Length = 483
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDI 375
++L+ A+ KPLV HN L D F++ F A LP + F L FP I D Y +
Sbjct: 151 VELLRAN-KPLVLHNGLIDLVFLYQCFYAHLPDRLGTFTADLSQMFPSGIYDTKYATE-- 207
Query: 376 GPVKKMTNISATIAYLKNRFFAPIEMEIPN-QANENEGKIHGHNV-VKICQLFGKLCSIL 433
+ T +YL+ +A + ++ N +A E EG G N+ V+ C+ G + + +
Sbjct: 208 ------YELRFTASYLE---YAYKKCKLENSKAIEAEGS--GSNLFVEFCKYTGNMETYI 256
Query: 434 KITPDAIESSDDFLASAINRYANIFYSLPGSSQEP 468
P S D A I + + P SQ P
Sbjct: 257 DYRPCLDSQSQDDGALNICVQFSAYGWCPNGSQCP 291
>gi|219125272|ref|XP_002182908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405702|gb|EEC45644.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 663
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKA-KFAAER 90
+TK NF E +++ H+ ++ FIA+ + TG R + P Y K+ ER
Sbjct: 4 VTKENFIEQTNDLLQHLPTAAFIAIDEEMTGITVPGTPRPAKEQPPSALYASTLKYVPER 63
Query: 91 FQILQFAICPFKL-----QASKVIAYPYNFHLFP 119
+ I+Q + F + + A YNF++FP
Sbjct: 64 YSIIQLGVVLFHATSEPGEVHEWQARRYNFYVFP 97
>gi|260818115|ref|XP_002603930.1| hypothetical protein BRAFLDRAFT_146106 [Branchiostoma floridae]
gi|229289254|gb|EEN59941.1| hypothetical protein BRAFLDRAFT_146106 [Branchiostoma floridae]
Length = 454
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
R++ + S+ PL+ HN L D F++ F LPP + F+ L FP I
Sbjct: 146 RQLFSELVCSRVPLILHNGLVDLVFLYQSFYTELPPTLGSFLADLSEMFPAGI 198
>gi|149035568|gb|EDL90249.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 489
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 154 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 210
Query: 366 I-DVNY 370
I D Y
Sbjct: 211 IYDTKY 216
>gi|149035570|gb|EDL90251.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_d
[Rattus norvegicus]
Length = 359
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|321474146|gb|EFX85112.1| hypothetical protein DAPPUDRAFT_194080 [Daphnia pulex]
Length = 232
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 308 KRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
K R++ ++ +++ PLV HN L D F++ A LP ++ F+ L + FP I
Sbjct: 149 KATWDLRDLFAVVISAKVPLVLHNGLVDLVFLYQNLYADLPTKLSSFLADLEVMFPNGI 207
>gi|149035572|gb|EDL90253.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_f
[Rattus norvegicus]
Length = 296
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 365 VIDVNY 370
+ D Y
Sbjct: 226 IYDTKY 231
>gi|149035567|gb|EDL90248.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_a
[Rattus norvegicus]
gi|149035574|gb|EDL90255.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 377
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 366 I-DVNY 370
I D Y
Sbjct: 99 IYDTKY 104
>gi|296207798|ref|XP_002750797.1| PREDICTED: target of EGR1 protein 1 [Callithrix jacchus]
Length = 511
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035573|gb|EDL90254.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_g
[Rattus norvegicus]
Length = 293
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 365 VIDVNY 370
+ D Y
Sbjct: 226 IYDTKY 231
>gi|427796785|gb|JAA63844.1| Putative caf1 family ribonuclease, partial [Rhipicephalus
pulchellus]
Length = 435
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 309 RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVID 367
+ R++ ++ +KP+V HN D F++ + LPP++ F+ L FP ++ D
Sbjct: 142 KAHSLRKLFSMLIVHKKPIVVHNGFMDAVFLYHSLYSALPPSLPTFLADLNDLFPGRIYD 201
Query: 368 VNYL 371
Y+
Sbjct: 202 TKYI 205
>gi|320586948|gb|EFW99611.1| caf1 family ribonuclease [Grosmannia clavigera kw1407]
Length = 361
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 320 ISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK 379
+ Q LV HN L D F++ F LP N+++F + FP+++D L+ G
Sbjct: 235 LKQRQPVLVGHNMLVDLCFLYRTFFETLPENLSDFSHKIHELFPRIVDTKNLVARGGHDM 294
Query: 380 KMTNISATIAYLKNRFFAPI 399
N ++ N+ P+
Sbjct: 295 HTVNNLQQLSTEANKLRKPV 314
>gi|149035576|gb|EDL90257.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_i
[Rattus norvegicus]
Length = 166
Score = 42.0 bits (97), Expect = 1.1, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 365 VIDVNY 370
+ D Y
Sbjct: 99 IYDTKY 104
>gi|148698638|gb|EDL30585.1| target of EGR1, member 1 (nuclear), isoform CRA_b [Mus musculus]
Length = 410
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 365 VIDVNY 370
+ D Y
Sbjct: 226 IYDTKY 231
>gi|148698639|gb|EDL30586.1| target of EGR1, member 1 (nuclear), isoform CRA_c [Mus musculus]
Length = 329
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 365 VIDVNY 370
+ D Y
Sbjct: 226 IYDTKY 231
>gi|348537505|ref|XP_003456234.1| PREDICTED: target of EGR1 protein 1-like [Oreochromis niloticus]
Length = 530
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 381
++KPLV HN L D F++ F A LP + F L FP I D Y+ +
Sbjct: 157 ARKPLVLHNGLIDMAFLYQSFYAHLPERLATFTADLSEMFPAGIYDTKYVTE-------- 208
Query: 382 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKL 429
+ + +YL+ +A + ++ N + G H ++ CQ G +
Sbjct: 209 FELRLSASYLE---YAYKKCKLDNGRSVGSGTTGPHVHIEFCQYAGHM 253
>gi|291229794|ref|XP_002734856.1| PREDICTED: TOE1 homolog [Saccoglossus kowalevskii]
Length = 544
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 310 VRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDV 368
V FRE+ I ++KPL+ HN D F++ F + LP +M F+ L F + D
Sbjct: 145 VHQFRELFSEIIKAEKPLIFHNGFLDLVFLYQCFYSELPSSMATFLADLSEIFSGGLFDT 204
Query: 369 NYL 371
Y+
Sbjct: 205 KYI 207
>gi|198434423|ref|XP_002129875.1| PREDICTED: similar to target of EGR1, member 1 (nuclear)
(predicted) [Ciona intestinalis]
Length = 446
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNYL 371
F E+I L +KPLV HN L D F+++ A LP +N F+ + FP + D Y+
Sbjct: 146 FAEIIKL----RKPLVLHNGLVDLVFLYNSLYAELPGTLNSFMADVCEIFPAGIYDCKYI 201
>gi|238502431|ref|XP_002382449.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
gi|220691259|gb|EED47607.1| hypothetical protein AFLA_002480 [Aspergillus flavus NRRL3357]
Length = 375
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 323 SQKP-LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK----DIGP 377
+ +P LV HN D +++ F PLP + EF + FP ++D Y+ I P
Sbjct: 130 THRPVLVGHNLFTDVVYLYRCFFGPLPDKLEEFQAIVHHMFPILMDTKYMATHDCGSITP 189
Query: 378 VKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIH---GHNVVKICQLFGKLCSILK 434
++ I+ + ++K + + N +I G++ + Q+F KL + L+
Sbjct: 190 KSSLSEINDNLLHIKTPKISAENASPYIHSKYNSQRIDHEAGYDSLLTAQIFIKLSAQLR 249
Query: 435 -----ITPDAIE 441
PD +E
Sbjct: 250 DGGISKLPDPVE 261
>gi|115497764|ref|NP_001069062.1| target of EGR1 protein 1 [Bos taurus]
gi|121957141|sp|Q17QN2.1|TOE1_BOVIN RecName: Full=Target of EGR1 protein 1
gi|109658265|gb|AAI18262.1| Target of EGR1, member 1 (nuclear) [Bos taurus]
gi|296488884|tpg|DAA30997.1| TPA: target of EGR1 protein 1 [Bos taurus]
gi|440907295|gb|ELR57455.1| Target of EGR1 protein 1 [Bos grunniens mutus]
Length = 524
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|71404979|ref|XP_805146.1| ribonuclease [Trypanosoma cruzi strain CL Brener]
gi|70868440|gb|EAN83295.1| ribonuclease, putative [Trypanosoma cruzi]
Length = 633
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 305 EQNKRVRGFREVIDLISAS---QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLA 361
E++ R G R + L++A+ +K LV HN L+D F+ + P P + EF ++R
Sbjct: 358 EKDPRYFGTRLLEALVTATRCWKKILVIHNGLSDLAFLCAAMHQPPPETLGEFKRTIREM 417
Query: 362 FPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 396
FP D + + + NI A LK +F
Sbjct: 418 FPFFFDT----RTLTCAPSLQNIGILTATLKKTYF 448
>gi|426215406|ref|XP_004001963.1| PREDICTED: target of EGR1 protein 1 isoform 3 [Ovis aries]
Length = 510
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|426215404|ref|XP_004001962.1| PREDICTED: target of EGR1 protein 1 isoform 2 [Ovis aries]
Length = 524
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|426215408|ref|XP_004001964.1| PREDICTED: target of EGR1 protein 1 isoform 4 [Ovis aries]
Length = 524
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035577|gb|EDL90258.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_j
[Rattus norvegicus]
Length = 431
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 96 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 152
Query: 366 I-DVNY 370
I D Y
Sbjct: 153 IYDTKY 158
>gi|426215402|ref|XP_004001961.1| PREDICTED: target of EGR1 protein 1 isoform 1 [Ovis aries]
Length = 510
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>gi|149035575|gb|EDL90256.1| target of EGR1, member 1 (nuclear) (predicted), isoform CRA_h
[Rattus norvegicus]
Length = 169
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 42 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 98
Query: 365 VIDVNY 370
+ D Y
Sbjct: 99 IYDTKY 104
>gi|47216610|emb|CAG10908.1| unnamed protein product [Tetraodon nigroviridis]
Length = 477
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNYLLKDIGPVKKM 381
++KPLV HN L D F++ F A LP + F L FP I D Y +
Sbjct: 157 AKKPLVLHNGLIDMVFLYQSFYAHLPERLATFTADLSQMFPAGIYDTKYACE-------- 208
Query: 382 TNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL--KITPDA 439
+ +YL+ + ++E A + H H ++ CQ + + + ++ P+A
Sbjct: 209 FELRLAASYLEYA-YKKCKLETSRSAALGQDTPHVH--IEFCQYAAHMSNYVDYRVCPEA 265
Query: 440 IESSDDFLASAINRYANIFYSLPGSSQEPTNEE 472
++ + +A+ R + F P Q P + +
Sbjct: 266 SPAAGE---TALCRQFSAFGWCPNGGQCPLSHD 295
>gi|426215410|ref|XP_004001965.1| PREDICTED: target of EGR1 protein 1 isoform 5 [Ovis aries]
Length = 430
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 89 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 145
Query: 366 I-DVNY 370
I D Y
Sbjct: 146 IYDTKY 151
>gi|167525212|ref|XP_001746941.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774721|gb|EDQ88348.1| predicted protein [Monosiga brevicollis MX1]
Length = 977
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
R V + + S P+V HN L D F++ A LP ++ F+ F +VID Y+
Sbjct: 717 RRVFEALIQSTAPIVTHNGLLDLCFLYQHLWADLPATLDVFVADCSQLFGRVIDTKYV 774
>gi|390349856|ref|XP_791390.2| PREDICTED: target of EGR1 protein 1-like [Strongylocentrotus
purpuratus]
Length = 549
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNYL 371
R + + I AS+KPL HN L D F++ LPP+ +FI L + +ID Y+
Sbjct: 160 LRLLFNNILASKKPLTLHNGLVDLVFLYQNLYTDLPPSSAQFIADLYEMYSGGIIDTKYV 219
>gi|213404606|ref|XP_002173075.1| CAF1 family ribonuclease [Schizosaccharomyces japonicus yFS275]
gi|212001122|gb|EEB06782.1| CAF1 family ribonuclease [Schizosaccharomyces japonicus yFS275]
Length = 411
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 72/368 (19%), Positives = 138/368 (37%), Gaps = 66/368 (17%)
Query: 32 ITKTNFNESLSEIKNHISSSDFIAVSLQNTG--SFSSPWHRVSTFDTPETAYLKAKFAAE 89
I NF E ++ + +D++A + +G S D + + +A+
Sbjct: 3 INANNFKEQFPLLQKCLDEADYVAFDCEFSGLDRTKGESRDGSAADAGDEIMNRLCSSAQ 62
Query: 90 RFQILQFAICPFKLQASKVIA--YPYNFHLFPR--DELKMGMPSYSFTCQTSYLTA--MA 143
F ++Q +C +L +K+ A P+ + P D L+ + CQ T +
Sbjct: 63 TFSVIQLGLCCIRLLPNKLQAECIPFTIDISPALPDCLRC-----TRRCQYDAQTIDFLL 117
Query: 144 KEGFDFNTCIYDGISYLSEAQESTVKVR-------MGNPMAVDHATKSSSSPALSVADTV 196
GFDF + +G+ Y++E +E+ ++ + +G PM +D ++S A+ VA
Sbjct: 118 NHGFDFTNHLANGVRYVTEMEETFIRSQVDAMNKAIGQPMTLDE----TASQAVRVA--- 170
Query: 197 FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256
R ++ W + + V+S + P+ I + V+
Sbjct: 171 -----RKNIQAW--------LAQKTPVSSFCNV--------DAPNRYIQKAVHQLVETEF 209
Query: 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREV 316
L S + + + AV + + + K+E E++ G R+V
Sbjct: 210 PQLHTISKRTFIQVRKQEHSASATENAVSGNPAQQRIARKKERILTCLEEHI---GCRKV 266
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAP-------------LPPNMNEFICSLRLAFP 363
D + + P V HN D ++ F A +PP + + S+R F
Sbjct: 267 WDHLMKLKVPFVFHNGFADLMYLVCTFCAAPSLQSVQSERPPIIPP--KQLLSSVRQHFT 324
Query: 364 QVIDVNYL 371
+V D L
Sbjct: 325 RVYDTALL 332
>gi|12855863|dbj|BAB30482.1| unnamed protein product [Mus musculus]
Length = 329
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ- 364
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIWA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 365 VIDVNY 370
+ D Y
Sbjct: 226 IYDTKY 231
>gi|387015694|gb|AFJ49966.1| Target of EGR1 protein 1-like [Crotalus adamanteus]
Length = 537
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP 363
Q++ +R F +++I A +KP++ HN L D F++ F A LP N+ F L FP
Sbjct: 141 QSQSIRTF--FLEIIRA-RKPIILHNGLIDLVFLYQCFYAHLPDNLGTFTADLSEMFP 195
>gi|351696836|gb|EHA99754.1| Target of EGR1 protein 1 [Heterocephalus glaber]
Length = 511
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNY 370
++LI A Q+PLV HN L D F++ F A LP ++ F L FP I D Y
Sbjct: 179 LELIRA-QRPLVLHNGLIDLVFLYQNFYAHLPDSLGTFTADLCEMFPAGIYDTKY 232
>gi|429861252|gb|ELA35948.1| caf1 family ribonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 619
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
P+V HN D FI+ F LP + EF ++ FP +ID +
Sbjct: 397 PIVGHNQFFDLLFIYQTFFDDLPASCGEFFANIYELFPHIIDTKLM 442
>gi|118362492|ref|XP_001014473.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila]
gi|89296240|gb|EAR94228.1| CAF1 family ribonuclease containing protein [Tetrahymena
thermophila SB210]
Length = 419
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
FR +ID I + P++ HN D ++ KFL LP EF + FP + D
Sbjct: 121 NFRSIIDEIINLKIPIIVHNGFIDILHLYDKFLYNLPEGSQEFKKEINKHFPVIFD 176
>gi|224006131|ref|XP_002292026.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972545|gb|EED90877.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 848
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 21 QQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP-----WHRVSTFD 75
Q+ H + +TK+NF L + +H+ ++ +IA+ + TG P + R+S +
Sbjct: 68 QRLTHQHIMVNVTKSNFLPQLQDFLHHLPTATYIAIDEEMTGIQLPPPPGETYRRLSKVE 127
Query: 76 TPETAYLKA-KFAAERFQILQFAICPF 101
P YL + K ER+ ILQ + F
Sbjct: 128 LPGERYLNSLKGVPERYSILQVGVALF 154
>gi|213511206|ref|NP_001133570.1| target of EGR1 protein 1 [Salmo salar]
gi|209154534|gb|ACI33499.1| Target of EGR1 protein 1 [Salmo salar]
Length = 528
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVI-DVNY 370
++L+ A +KPLV HN L D F++ F A LP + F L FP I D Y
Sbjct: 151 VELLRA-RKPLVLHNGLIDMVFLYQCFYAHLPDKLGTFTADLSQMFPAGIYDTKY 204
>gi|380479005|emb|CCF43280.1| hypothetical protein CH063_03036 [Colletotrichum higginsianum]
Length = 632
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+ + D + S+ +V HN D F+++ F+ LP +++F+ + FP ++D +
Sbjct: 407 LKTIEDQLKRSRPVIVGHNQFMDLLFLYNTFVDDLPATLDDFLAKIHELFPYILDTKLM 465
>gi|429329996|gb|AEM05832.2| polyprotein [Rosavirus M-7]
Length = 2470
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESL--------------SEIKNHISSSD 52
P+ LR RS T HH+ + K ++L + +++H+ SSD
Sbjct: 116 PAGLRFRSIATTEWNTTDHHFSPIPLLKVKLPQALLADSGPDPSNLFHPTAVRHHLMSSD 175
Query: 53 FIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYP 112
F N F+S V P T A + E F Q++ P +++ +P
Sbjct: 176 FAVTVTVNANPFASGCLLVVALPNPPTVSPDADVSLELFTTSQYSSTPGAYTRAQLTLFP 235
Query: 113 YNF 115
+ F
Sbjct: 236 HQF 238
>gi|83282387|ref|XP_729748.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23488425|gb|EAA21313.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 771
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 291 DKDLLKRELQTFEFEQNK--RVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLP 348
+KD +++ + E K G R + D I S K L+ HN D I+ F LP
Sbjct: 407 EKDSYNEQIKALQMEIEKINETIGVRLLFDEIIKSNKILIGHNCFYDILHIYQTFYHELP 466
Query: 349 PNMNEFICSLRLAFPQVIDVNYL 371
+++ F FP +D Y+
Sbjct: 467 DSIHAFKRKWTELFPYTVDTKYM 489
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,078,851,437
Number of Sequences: 23463169
Number of extensions: 359403034
Number of successful extensions: 951367
Number of sequences better than 100.0: 427
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 949988
Number of HSP's gapped (non-prelim): 797
length of query: 621
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 472
effective length of database: 8,863,183,186
effective search space: 4183422463792
effective search space used: 4183422463792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)