BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007029
(621 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>pdb|3D45|A Chain A, Crystal Structure Of Mouse Parn In Complex With M7gpppg
pdb|3D45|B Chain B, Crystal Structure Of Mouse Parn In Complex With M7gpppg
Length = 507
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 4 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 63
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 64 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 122
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 123 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 182
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 183 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS---- 213
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 214 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 273
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 274 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 332
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 333 IN-NTSLAELEKRLKETPFDPPKVE 356
>pdb|1N8N|A Chain A, Crystal Structure Of The Au3+ Complex Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 1.69
A RESOLUTION
pdb|1N9K|A Chain A, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2
A RESOLUTION
pdb|1N9K|B Chain B, Crystal Structure Of The Bromide Adduct Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE FROM E. COLI AT 2.2
A RESOLUTION
pdb|1RMQ|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking
The Catalytic Intermediate
pdb|1RMQ|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE With Osmiate Mimicking
The Catalytic Intermediate
pdb|1RMT|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|C Chain C, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMT|D Chain D, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Complexed With Adenosine.
pdb|1RMY|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic
Metal
pdb|1RMY|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Deoxycytosine And Phosphate Bound To The Catalytic
Metal
pdb|2G1A|A Chain A, Crystal Structure Of The Complex Between Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|2G1A|B Chain B, Crystal Structure Of The Complex Between Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|3CZ4|A Chain A, Native Apha Class B Acid PhosphatasePHOSPHOTRANSFERASE
From E. Coli
Length = 212
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 3 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFDIDDTVLF 51
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 52 SSPGFWRGKKTFSPESEDYLK 72
>pdb|2HEG|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
pdb|2HEG|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Apha Class B
Acid PhosphatasePHOSPHOTRANSFERASE
Length = 211
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 2 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFXIDDTVLF 50
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 51 SSPGFWRGKKTFSPESEDYLK 71
>pdb|2B82|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B82|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate Bound To The Catalytic Metal At
1.2 A Resolution
pdb|2B8J|A Chain A, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2B8J|B Chain B, Crystal Structure Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE Ternary Complex With
Adenosine And Phosphate At 2 A Resolution
pdb|2HF7|A Chain A, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
pdb|2HF7|B Chain B, Transition State Analogue Of Apha Class B Acid
PhosphatasePHOSPHOTRANSFERASE (ALUMINIUM FLUORIDE
COMPLEX)
Length = 211
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 7 PSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVS--LQNTGSF 64
PSPL + + +Q P HW S+++I+N ++ +AV + +T F
Sbjct: 2 PSPLNPGTNVARLAEQAPIHW-----------VSVAQIENSLAGRPPMAVGFDIDDTVLF 50
Query: 65 SSP--WHRVSTFDTPETAYLK 83
SSP W TF YLK
Sbjct: 51 SSPGFWRGKKTFSPESEDYLK 71
>pdb|3CXB|A Chain A, Crystal Structure Of Sifa And Skip
pdb|3HW2|A Chain A, Crystal Structure Of The Sifa-skip(ph) Complex
Length = 336
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 397 APIEMEIPNQANENEG-KIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYA 455
A I + I +Q ENE +I + C++ G L ++K PD ++S A RY+
Sbjct: 94 ATIILRIMDQNEENELLRITQNTDTFSCEVMGNLYFLMKDRPDILKSHPQMTAMIKRRYS 153
Query: 456 NIF-YSLPGS 464
I Y LP +
Sbjct: 154 EIVDYPLPST 163
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 315 EVIDLISASQKPLVAHNSLNDF--TFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
E +D I+ KP V NSLND FI S P P N F S+ + V+
Sbjct: 26 ETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVV 79
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 315 EVIDLISASQKPLVAHNSLNDF--TFIHSKFLAPLPPNMNEFICSLRLAFPQVI 366
E +D I+ KP V NSLND FI S P P N F S+ + V+
Sbjct: 26 ETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGFPKSICTSINHVV 79
>pdb|1ZB7|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type G Light
Chain
Length = 455
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548
+ ++G +S +M+ H +E F RM+ R C P N F NV +K
Sbjct: 158 LIIFGPGPVLSDNFTDSMIMNGHSPISEGFGARMMIRFC-------PSCLNVFNNVQENK 210
Query: 549 AVS 551
S
Sbjct: 211 DTS 213
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query: 170 VRMGNPMAVDHATKSSSSPALSVADTV-------FIERVRSRVKHWKNACTDSDIKTEAL 222
VR+G + +P LS+ + F +R+R ++ + + C ++K + L
Sbjct: 60 VRVGGEAQASFNKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMC---ELKIDGL 116
Query: 223 VTSLRKIVLGGEQFGSRPSMTI--DVCSERQV--QLVLKMLEDFSDVLVPLIIPAKGGGT 278
SL+ + Q +R T D+ + + LKM E PL + +G
Sbjct: 117 AVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKE-------PLNVEVRGEAY 169
Query: 279 QAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTF 338
R+ L ++E + K + Q F +N R++ ++A +K V S+NDFT
Sbjct: 170 MPRRSFLRLNEEKE---KNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTD 226
Query: 339 IHSK 342
+++
Sbjct: 227 FNAR 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,368,154
Number of Sequences: 62578
Number of extensions: 685805
Number of successful extensions: 1678
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 14
length of query: 621
length of database: 14,973,337
effective HSP length: 105
effective length of query: 516
effective length of database: 8,402,647
effective search space: 4335765852
effective search space used: 4335765852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)