BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007029
(621 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W4C3|PARNL_ARATH Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana
GN=At3g25430 PE=2 SV=1
Length = 618
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/613 (55%), Positives = 452/613 (73%), Gaps = 18/613 (2%)
Query: 17 TKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT 76
TKT+ Q W +KQ+ K+NF+ +L EI+ I SSDFIA+SLQNTGS+++ WHRVS DT
Sbjct: 16 TKTLNQG--RWSVKQVKKSNFHVTLDEIRTSIDSSDFIALSLQNTGSYAAAWHRVSAIDT 73
Query: 77 PETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQT 136
P+T+YLKAK+AAER+QILQFA+CPF LQ SK+ +PYNFHLFPRDELK GMPSYSF+CQ
Sbjct: 74 PQTSYLKAKYAAERYQILQFALCPFSLQGSKLTVHPYNFHLFPRDELKCGMPSYSFSCQA 133
Query: 137 SYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV 196
S LTAMA+EGFDFN CIY+GISYLS AQES K NP+ D T SSSPA +VADTV
Sbjct: 134 SRLTAMAREGFDFNICIYEGISYLSRAQESASKFLSENPILADSVT-VSSSPA-TVADTV 191
Query: 197 FIERVRSRVKHWKNACTDSDIKT--EALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQL 254
F+ R+RSRVK+W+ +C DS KT + LV+SLR++VLG EQ+GSR +TIDVCSERQVQL
Sbjct: 192 FVGRIRSRVKNWRQSCIDSGSKTGDDDLVSSLRRLVLGSEQYGSRLCLTIDVCSERQVQL 251
Query: 255 VLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFR 314
+L+ML +FSD +VPL++ +K GTQAVR V SS EDKDL KREL+ E E+N+RVRGFR
Sbjct: 252 ILEMLTEFSDDVVPLLVASKSRGTQAVRTVFMSSKEDKDLFKRELKDLEKEENRRVRGFR 311
Query: 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKD 374
EV+D IS+SQKP+V+ N L+DFT IH+KFL PLP N+++F SL AFP V+D++ +K+
Sbjct: 312 EVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKE 371
Query: 375 IGPVKKMTNISATIAYLKNRFFAPIEMEIPNQA---NENEG-KIHGHNVVKICQLFGKLC 430
I P+ ++N+ A ++ L NRFFAP+++E+ NQ +EG + HG N V I QLF KLC
Sbjct: 372 ISPLSNISNLPAAMSSL-NRFFAPVDVEVANQGCPVKLDEGHQSHGQNAVMISQLFAKLC 430
Query: 431 SILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVF 490
+I K I+S++DF A A + +AN S+ S+ +E ++ W+ + R+VS E++VF
Sbjct: 431 TIQKSDLSTIQSNEDFQALASDEHAN---SVTSCSKNAGDENVKVWSKNSRRVSSENLVF 487
Query: 491 LWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTF-KNVMNSKA 549
+WG ++++A LKN+LQ SH VFA F+V+ +DRS AI+VF + G S TF V N +
Sbjct: 488 IWGLGKKMTAAKLKNVLQKSHPVFAREFDVKYIDRSSAILVFWESGPSETFLSAVNNEEQ 547
Query: 550 VSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEI 609
+ G LREMV++GL+ AGYETY+R C G WE+ LA++LDK L S + ++ +TK SEI
Sbjct: 548 LDGSLREMVAEGLRGAGYETYKRACRLGFWEADLAESLDKALESSD--TDPDSDTKPSEI 605
Query: 610 YLSNEL-INLAEL 621
SNEL IN EL
Sbjct: 606 DWSNELAINFDEL 618
>sp|Q9LG26|PARN_ARATH Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN
PE=1 SV=2
Length = 689
Score = 231 bits (590), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 175/657 (26%), Positives = 320/657 (48%), Gaps = 84/657 (12%)
Query: 27 WPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKF 86
+P+K +T++NF +L+++++ + ++DF+A+ L+ TG S+PW FD + YLK K
Sbjct: 36 FPLKHVTRSNFETTLNDLRSLVKAADFVAIDLEMTGVTSAPWRDSLEFDRYDVRYLKVKD 95
Query: 87 AAERFQILQFAICPFKL--QASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+AE+F ++QF +CPF+ + ++YP+NF +FPR EL P++ F CQT+ + +AK
Sbjct: 96 SAEKFAVVQFGVCPFRWDSRTQSFVSYPHNFFVFPRQELTFDPPAHEFLCQTTSMDFLAK 155
Query: 145 EGFDFNTCIYDGISYLS--EAQESTVKVRM-GNPMAVDHATKSSSSPALSVADTVFIERV 201
FDFNTCI++GISYLS E +E++ +++M +D + ++ + +AD +F R+
Sbjct: 156 YQFDFNTCIHEGISYLSRREEEEASKRLKMLHGEDGIDSSGETEELKLVRLADVLFAARM 215
Query: 202 RSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQ------FGSRPSMTIDVCSERQVQLV 255
+ W++ + + +I G Q RP++++ + Q++++
Sbjct: 216 EKLLNEWRSGL----LHGGNASSEFPRISNGSNQSMETVFHHMRPALSLKGFTSHQLRVL 271
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVR---- 311
+L LV + K ++ + V T SD DK+ L +E + ++ KR+
Sbjct: 272 NSVLRKHFGDLVYIHSNDKSSSSRDI-VVYTDSDSDKENLMKEAK----DERKRLAERKI 326
Query: 312 ----GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID 367
GFR+VIDL+++ +K +V HN D ++SKF+ PLP +F+ S+ FP ++D
Sbjct: 327 QSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVD 386
Query: 368 VNYLLKDIGPV--KKMTNIS-------------------ATIAYLKNRFFAPIEMEIPNQ 406
LL ++ P+ ++M S ++ ++L+ R +E++
Sbjct: 387 TKILL-NVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRC 445
Query: 407 ANENEGKIH--GHNVVKICQLFGKLCSILKITPDAIESSDDFLAS-AINRYANIFYSLPG 463
+N N G H G++ +F + C+ L DDF + + +Y N Y L
Sbjct: 446 SNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLY-LSW 504
Query: 464 SSQEPTNEEIRGWTNDKRKVS---CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-- 518
+ + + D +VS E++V +W F ++ A +G E +AF
Sbjct: 505 TRGDIIDLRTGHSNADNWRVSKFKYENIVLIWNFPRKLKA-------RGIKECICKAFGS 557
Query: 519 ----NVRMVDRSCAIVVFGKPGLSNTF---KNVMNSK----AVSGPLREMVSDG-LKAAG 566
+V VD S V+F L F K + S +V PL +++ G AA
Sbjct: 558 ASVTSVYHVDDSAVFVLFKNSELVWDFLALKRQLESSDGPVSVLHPLSKILEGGNTGAAD 617
Query: 567 YETYQRVCSSGLWESALADALD------KTLASHNCLSEAAYETKQSEIYLSNELIN 617
YE Y+ +CSS + E +D + +T + C +E E + + +++LI+
Sbjct: 618 YEAYKEICSSHVSEVMFSDQAETVGVKSRTRPNAQCETETREENTVTVTHKASDLID 674
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 53/383 (13%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST----FDTPETAYLKAKF 86
+IT++NF ++L ++ I +DF+A+ + +G P VST FDTPE Y K K
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGP--SVSTLTNGFDTPEERYTKLKK 59
Query: 87 AAERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAK 144
+ F + QF +C F +K + +NF++FP+ P F CQ+S + +A
Sbjct: 60 HSMEFLLFQFGLCTFNYDNTEAKYLMKSFNFYIFPK-PFNRNSPDKKFVCQSSSIDFLAN 118
Query: 145 EGFDFNTCIYDGISYLSEAQESTVKVRMGNPMA-------VDHATKSSSSPALSVADTV- 196
+GFDFN +GI YL++ +E ++ + + + + + + +SS +S+ D
Sbjct: 119 QGFDFNKVFRNGIPYLNQEEERVLRDQYEDRRSQSNGASTMSYISPNSSKTPVSIPDEQK 178
Query: 197 -FIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLV 255
FI++V RV+ + L EQ SM ++ C+ Q +L+
Sbjct: 179 GFIDKVVERVEDF----------------------LKNEQ----KSMNVEPCTGYQRKLI 212
Query: 256 LKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSS---DEDKDLLKRELQTFEFEQNKRVRG 312
+ L + P I + ++ + S +E++ ++++ Q E E+ G
Sbjct: 213 YQTL----NWKYPRGIHVETVESEKKERYIVISKVDEEERKRMEQQKQAKEREELDDAVG 268
Query: 313 FREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL 372
F +I IS+S K +V HN L D +F LP +NEF FP+V+D L+
Sbjct: 269 FSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTK-LM 327
Query: 373 KDIGPVKKMTNISATIAYLKNRF 395
P K++ + ++A L+ R
Sbjct: 328 ASTNPFKEII-YNTSLAELEKRL 349
>sp|P69341|PARN_BOVIN Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2
Length = 638
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 173/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ D F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP ++NEF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFNPPKVE 361
>sp|O95453|PARN_HUMAN Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1
SV=1
Length = 639
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 173/385 (44%), Gaps = 38/385 (9%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQ--ASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSS--SPALSVADTVFIERVRSR 204
FDFN +GI YL++ +E ++ + + + + S SP S E +
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
+ + +V + ++ E ++ ++ C+ Q +L+ + L
Sbjct: 181 I--------------DQVVEKIEDLLQSEEN----KNLDLEPCTGFQRKLIYQTL----S 218
Query: 265 VLVPLIIPAKGGGTQAV-RAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T+ R ++ S ++++ +RE Q EQ + GF VI I+
Sbjct: 219 WKYPKGIHVETLETEKKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIA 278
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K ++ HN L D +F PLP +++EF FP+++D L+ P K +
Sbjct: 279 NSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMASTQPFKDI 337
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 338 IN-NTSLAELEKRLKETPFNPPKVE 361
>sp|Q5RC51|PARN_PONAB Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2
SV=1
Length = 639
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 174/391 (44%), Gaps = 50/391 (12%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P T FDTPE Y K K +
Sbjct: 2 EIIRSNFKCNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK-PFNRSPPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPM-------AVDHATKSSSSPALSVAD--TVF 197
FDFN +GI YL++ +E ++ + A+ + + ++S +++ + F
Sbjct: 121 FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGALSYVSPNTSKCPVTIPEDQKKF 180
Query: 198 IERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLK 257
I++V +++ + + ++ E RK++ + + ++ + +
Sbjct: 181 IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKE---- 236
Query: 258 MLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFRE 315
R ++ S ++++ +RE Q EQ + GF
Sbjct: 237 ------------------------RYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSR 272
Query: 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI 375
VI I+ S K ++ HN L D +F PLP +++EF FP+++D L+
Sbjct: 273 VIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTK-LMAST 331
Query: 376 GPVKKMTNISATIAYLKNRF----FAPIEME 402
P K + N + ++A L+ R F+P ++E
Sbjct: 332 QPFKDIIN-NTSLAELEKRLKETPFSPPKVE 361
>sp|Q8VDG3|PARN_MOUSE Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1
SV=1
Length = 624
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 45/385 (11%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSP--WHRVSTFDTPETAYLKAKFAA 88
+I ++NF +L ++ I +DF A+ + +G P S FDTPE Y K K +
Sbjct: 2 EIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C FK SK + +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MDFLLFQFGLCAFKYDHTDSKHVTKSFNFYVFPK-PFSRSSPDVKFVCQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTV--FIERVRSR 204
FDFN GI YL++ +E ++ + + + + + +++ + FI++V +
Sbjct: 121 FDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGALAKCPVTIPEDQKKFIDQVIEK 180
Query: 205 VKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSD 264
++ + L E+ + S+ +D C+ Q +L+ + L
Sbjct: 181 IEDF----------------------LQSEE---KRSLELDPCTGFQRKLIYQTLS---- 211
Query: 265 VLVPLIIPAKGGGT-QAVRAVLTSSDEDKDLLKRELQTFEFEQNK--RVRGFREVIDLIS 321
P I + T + R ++ S ++++ +RE + + EQ + GF VI I+
Sbjct: 212 WKYPKGIHVETLETDKKERHIVISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIA 271
Query: 322 ASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKM 381
S K +V HN L D +F PLP ++NEF FP+++D L+ P K +
Sbjct: 272 NSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTK-LMASTQPFKDI 330
Query: 382 TNISATIAYLKNRF----FAPIEME 402
N + ++A L+ R F P ++E
Sbjct: 331 IN-NTSLAELEKRLKETPFDPPKVE 354
>sp|Q8NA58|PNDC1_HUMAN Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Homo sapiens GN=PNLDC1 PE=2 SV=2
Length = 520
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F + Q + F +A+K IA+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTVCQIGLSVFSAIEGEANKYIAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ H +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR----------HDILTG 137
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W + D T +T +
Sbjct: 138 NWRVRSSPDKDQIKVVIDEVTRWLELAKEGDWMTLPGITGFQAF---------------- 181
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 -----EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS- 234
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 235 -----ARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV 289
Query: 365 VIDVNYLLKDI 375
+ID + KDI
Sbjct: 290 LIDTKSVTKDI 300
>sp|Q5R6R6|PNDC1_PONAB Poly(A)-specific ribonuclease PARN-like domain-containing protein 1
OS=Pongo abelii GN=PNLDC1 PE=2 SV=1
Length = 520
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 133/311 (42%), Gaps = 45/311 (14%)
Query: 69 HRVSTFDTPETAYLKAKFAAERFQILQFAICPFKL---QASKVIAYPYNFHLFPRDELKM 125
++S FD P YLK + + ++F I Q + F +A+K A+ NF+LFP
Sbjct: 31 QQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSAIEGEANKYTAHSCNFYLFPT---TF 87
Query: 126 GMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSS 185
G+ F+ Q S + + + GF++N + +GI Y++E QE ++ H +
Sbjct: 88 GILDSEFSFQASSVQFLNQYGFNYNKFLKNGIPYMNEEQEKKIR----------HDILTG 137
Query: 186 SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTID 245
+ S D I+ V V W + + D T +T +
Sbjct: 138 NWRVRSSPDKDQIKVVIDEVTRWLDLAKEGDWMTLPGITGFQAF---------------- 181
Query: 246 VCSERQVQLVLKM-LEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEF 304
+VQLVL+ L + VL + K Q R L ++ D++ +E
Sbjct: 182 -----EVQLVLRQALPNIWTVLKDEGVVVKKVSKQH-RWYLQNTSCDRESCWKENILLS- 234
Query: 305 EQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ 364
RGF ++ +QKPLV HN + D +H KF PLP + ++F ++ FP
Sbjct: 235 -----ARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV 289
Query: 365 VIDVNYLLKDI 375
+ID + KDI
Sbjct: 290 LIDTKSVTKDI 300
>sp|Q7ZU92|PARN_DANRE Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2
Length = 660
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVST--FDTPETAYLKAKFAA 88
++T+ NF E L E+ N + +DFI++ + TG P T DTPE Y K + +
Sbjct: 2 EVTRQNFKEVLPEVCNAVQEADFISIDGEFTGISDGPSVSALTNGLDTPEERYTKLRKHS 61
Query: 89 ERFQILQFAICPFKLQA--SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEG 146
F + QF +C F+ S I +NF++FP+ P F CQ+S + +A +G
Sbjct: 62 MNFLLFQFGVCTFRYDQNQSTYITKAFNFYIFPK-PFSRTSPDIKFICQSSSIDFLASQG 120
Query: 147 FDFNTCIYDGISYLSEAQESTVK 169
FDFN GI YL++ +E ++
Sbjct: 121 FDFNKVFRSGIPYLNQEEECQLR 143
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 312 GFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
GF VI IS S K +V HN L D +F PLP +++F FP+++D L
Sbjct: 267 GFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTK-L 325
Query: 372 LKDIGPVKKM---TNISATIAYLKNRFFAPIEMEIP 404
+ P K++ T+++ L+ + F P E P
Sbjct: 326 MASTQPFKEIIHNTSLAELHKQLRQKPFRPPTTECP 361
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 149/345 (43%), Gaps = 30/345 (8%)
Query: 31 QITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAER 90
+I NF E+L E++ H+ S+ ++++ + +G ++ +T + Y + ++ R
Sbjct: 2 EIHGKNFLETLKELEKHVDSAHYVSIDCEFSGLLRD--FNLNNKNTLQDRYELLRKSSIR 59
Query: 91 FQILQFAICPFKLQAS-KVIAYPYNFHLFP--RDELKMGMPSYSFTCQTSYLTAMAKEGF 147
+ ILQ I LQ + K P N ++ P +DEL + F + S + + ++GF
Sbjct: 60 YTILQIGITFIYLQNNGKSSCIPVNINVSPLVKDELHLKR---DFCSEASSIKFLIQQGF 116
Query: 148 DFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKH 207
DFN + +G+ YLS +E + ++ + +T +S L D + R+++K+
Sbjct: 117 DFNKQLTEGVPYLSRIEERNLIDKVN-----ERSTDDLTSSILDACDEEILVDARNQIKN 171
Query: 208 WKNA-CTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVL 266
W ++ + S K + TS R I + T+ +R V K +E+
Sbjct: 172 WLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIEN----- 226
Query: 267 VPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKP 326
TQ + + S+ +D+ +L K+ G R + D I +K
Sbjct: 227 ---------STTQC--SATSKSELKEDIASDQLILNNLNLIKQNVGLRHLWDYILKKKKS 275
Query: 327 LVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYL 371
+V HN + D ++ S F +P + EF +F + D L
Sbjct: 276 VVCHNGMADLVYLFSLFEGKVPETILEFSELCLSSFKSIYDTKLL 320
>sp|Q9D2E2|TOE1_MOUSE Target of EGR1 protein 1 OS=Mus musculus GN=Toe1 PE=2 SV=1
Length = 511
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q17QN2|TOE1_BOVIN Target of EGR1 protein 1 OS=Bos taurus GN=TOE1 PE=2 SV=1
Length = 524
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q + VR ++LI A ++PLV HN L D F++ F A LP N+ F L FP
Sbjct: 169 QRQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPENLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q5RAR6|TOE1_PONAB Target of EGR1 protein 1 OS=Pongo abelii GN=TOE1 PE=2 SV=1
Length = 510
Score = 39.7 bits (91), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP ++ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q96GM8|TOE1_HUMAN Target of EGR1 protein 1 OS=Homo sapiens GN=TOE1 PE=1 SV=1
Length = 510
Score = 39.3 bits (90), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 306 QNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQV 365
Q++ VR ++LI A ++PLV HN L D F++ F A LP ++ F L FP
Sbjct: 169 QSQSVRTL--FLELIRA-RRPLVLHNGLIDLVFLYQNFYAHLPESLGTFTADLCEMFPAG 225
Query: 366 I-DVNY 370
I D Y
Sbjct: 226 IYDTKY 231
>sp|Q9BTE0|NAT9_HUMAN N-acetyltransferase 9 OS=Homo sapiens GN=NAT9 PE=2 SV=1
Length = 207
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 18/114 (15%)
Query: 229 IVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIP-----AKGGGTQAVRA 283
IVL E++ ++P T + C V L L LED + + ++I KG GT+AV A
Sbjct: 68 IVLDAEKWQAQPGATEESCMVGDVNLFLTDLEDLTLGEIEVMIAEPSCRGKGLGTEAVLA 127
Query: 284 VLTSSDEDKDLLK-------------RELQTFEFEQNKRVRGFREVIDLISASQ 324
+L+ L K R Q FEQ F+EV ++ S+
Sbjct: 128 MLSYGVTTLGLTKFEAKIGQGNEPSIRMFQKLHFEQVATSSVFQEVTLRLTVSE 181
>sp|Q038V6|ADDB_LACC3 ATP-dependent helicase/deoxyribonuclease subunit B OS=Lactobacillus
casei (strain ATCC 334) GN=rexB PE=3 SV=1
Length = 1179
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 548 KAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLA 592
KAV G R M+SD ++AAG +Q++ S W+ LA TLA
Sbjct: 715 KAVLGSQRAMLSDFVRAAGEAQHQKLPLSRSWQGVLASLKQTTLA 759
>sp|Q8D3D5|OPGH_WIGBR Glucans biosynthesis glucosyltransferase H OS=Wigglesworthia
glossinidia brevipalpis GN=mdoH PE=3 SV=1
Length = 826
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 371 LLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLC 430
+++ I M + A R + P+ + E GHN + + F K C
Sbjct: 377 IIQSIPKASGMNTLYARYHQFSTRVYGPLFTAGMHFWQLGESHYWGHNAIIRIKPFIKYC 436
Query: 431 SILKITPDAIES----SDDFLASAINRYAN----IFYSLPGSSQEPTNEEIRGWTNDKR 481
+ + + I S S DF+ +A+ R A I Y +PGS +EP + D+R
Sbjct: 437 VLSPLPGNGIFSGSILSHDFVEAALMRRAGWSVWIAYDIPGSYEEPPPNLLDELKRDRR 495
>sp|Q8K4E0|ALMS1_MOUSE Alstrom syndrome protein 1 homolog OS=Mus musculus GN=Alms1 PE=1 SV=2
Length = 3251
Score = 33.1 bits (74), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 326 PLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAF-PQVIDVNYLLKDIG 376
PLV +ND +FI SK + + +C+ R +F +V + Y+ KDIG
Sbjct: 1445 PLVPFRDVNDVSFIRSKKVVCFKESSTTDVCTQRESFVEEVPHIEYVQKDIG 1496
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,839,283
Number of Sequences: 539616
Number of extensions: 8674025
Number of successful extensions: 21129
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21067
Number of HSP's gapped (non-prelim): 35
length of query: 621
length of database: 191,569,459
effective HSP length: 124
effective length of query: 497
effective length of database: 124,657,075
effective search space: 61954566275
effective search space used: 61954566275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)