Query 007029
Match_columns 621
No_of_seqs 192 out of 503
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d45_A Poly(A)-specific ribonu 100.0 3E-103 1E-107 872.2 29.5 479 29-549 2-497 (507)
2 2a1r_A Poly(A)-specific ribonu 100.0 2.3E-90 7.8E-95 754.8 24.7 406 30-464 1-426 (430)
3 4gmj_B CCR4-NOT transcription 100.0 2.6E-47 9.1E-52 393.1 17.7 249 26-460 9-261 (285)
4 2d5r_A CCR4-NOT transcription 100.0 1.8E-44 6E-49 365.8 22.4 231 28-434 1-236 (252)
5 2p51_A SPCC18.06C protein; DED 100.0 3E-44 1E-48 373.8 24.5 249 24-460 18-271 (333)
6 1uoc_A POP2; hydrolase, DEDD n 100.0 9E-44 3.1E-48 366.2 22.3 253 26-460 13-284 (289)
7 1whv_A Poly(A)-specific ribonu 99.5 4E-14 1.4E-18 122.1 5.5 70 474-549 4-73 (100)
8 3ctr_A Poly(A)-specific ribonu 99.2 5.9E-12 2E-16 108.9 5.3 68 483-556 3-72 (101)
9 1ug8_A Poly(A)-specific ribonu 98.8 8.9E-09 3E-13 87.1 7.1 73 191-288 6-78 (87)
10 2gui_A DNA polymerase III epsi 96.5 0.01 3.5E-07 56.7 10.0 97 312-431 81-183 (194)
11 1wlj_A Interferon stimulated g 96.4 0.0087 3E-07 57.3 8.9 87 323-436 82-172 (189)
12 2p1j_A POLIII, DNA polymerase 96.1 0.026 9E-07 53.7 10.2 93 312-432 78-175 (186)
13 1w0h_A 3'-5' exonuclease ERI1; 95.9 0.013 4.3E-07 56.4 7.2 85 325-433 106-195 (204)
14 1zbh_A 3'-5' exonuclease ERI1; 95.8 0.025 8.4E-07 58.3 8.9 85 325-433 174-263 (299)
15 3mxm_B Three prime repair exon 95.5 0.013 4.3E-07 58.7 5.6 84 325-433 119-215 (242)
16 3v9w_A Ribonuclease T; DEDD nu 95.1 0.055 1.9E-06 53.3 8.6 87 323-435 133-223 (235)
17 2f96_A Ribonuclease T; RNAse, 94.9 0.063 2.2E-06 52.5 8.4 86 323-434 125-214 (224)
18 3u3y_B Three prime repair exon 94.6 0.054 1.9E-06 56.4 7.2 94 315-433 107-215 (314)
19 1zbu_A ERI-1 homolog, 3'-5' ex 94.3 0.09 3.1E-06 55.5 8.2 106 304-433 194-313 (349)
20 2xri_A ERI1 exoribonuclease 3; 94.0 0.11 3.8E-06 50.9 7.8 85 324-432 117-213 (224)
21 1y97_A Three prime repair exon 93.6 0.14 4.7E-06 50.3 7.6 84 324-433 113-210 (238)
22 3cg7_A CRN-4, cell death-relat 92.5 0.085 2.9E-06 54.6 4.4 98 311-432 93-208 (308)
23 2igi_A Oligoribonuclease; RNAs 92.0 0.68 2.3E-05 43.3 9.6 74 324-433 100-177 (180)
24 2diu_A KIAA0430 protein; struc 91.7 0.27 9.1E-06 42.3 5.7 63 484-549 7-70 (96)
25 2gbz_A Oligoribonuclease; ORN, 90.3 1.5 5.3E-05 41.6 10.4 74 325-433 105-181 (194)
26 2dnp_A RNA-binding protein 14; 89.4 0.65 2.2E-05 38.0 6.1 61 483-548 6-66 (90)
27 1x4c_A Splicing factor, argini 89.4 0.89 3E-05 38.7 7.1 63 483-549 12-74 (108)
28 3v9w_A Ribonuclease T; DEDD nu 88.8 0.4 1.4E-05 47.0 5.1 58 40-120 26-85 (235)
29 2f96_A Ribonuclease T; RNAse, 87.8 0.53 1.8E-05 45.8 5.2 54 44-120 22-77 (224)
30 1x5s_A Cold-inducible RNA-bind 87.0 1.2 4.1E-05 37.1 6.4 62 483-548 9-77 (102)
31 1nu4_A U1A RNA binding domain; 86.4 1.1 3.6E-05 37.1 5.6 63 486-548 8-74 (97)
32 2fc8_A NCL protein; structure 86.3 1 3.5E-05 37.6 5.6 59 483-548 12-77 (102)
33 2dgx_A KIAA0430 protein; RRM d 85.8 1.5 5E-05 36.5 6.2 63 486-548 9-75 (96)
34 2fc9_A NCL protein; structure 85.0 1.1 3.9E-05 37.3 5.2 63 479-548 8-76 (101)
35 2cq0_A Eukaryotic translation 84.7 1.7 5.7E-05 36.4 6.1 63 482-548 11-80 (103)
36 2cpi_A CCR4-NOT transcription 84.5 1.9 6.6E-05 36.8 6.5 64 484-548 13-86 (111)
37 2cqc_A Arginine/serine-rich sp 84.3 2.2 7.4E-05 34.9 6.6 63 482-548 11-80 (95)
38 2dgt_A RNA-binding protein 30; 84.3 2 6.9E-05 35.1 6.3 60 484-548 8-67 (92)
39 2dgo_A Cytotoxic granule-assoc 84.2 2.4 8.2E-05 36.2 7.0 62 483-548 12-80 (115)
40 2dnm_A SRP46 splicing factor; 84.1 3.6 0.00012 34.3 8.0 62 484-549 11-79 (103)
41 2cq3_A RNA-binding protein 9; 84.1 3.1 0.00011 34.7 7.6 62 483-548 12-78 (103)
42 1x5u_A Splicing factor 3B subu 83.9 1.8 6.1E-05 36.3 6.0 63 482-548 11-80 (105)
43 2a3j_A U1 small nuclear ribonu 83.7 2.2 7.5E-05 38.0 6.7 64 486-549 29-96 (127)
44 2p1j_A POLIII, DNA polymerase 83.4 1.3 4.6E-05 41.7 5.5 48 47-120 8-55 (186)
45 3beg_B Splicing factor, argini 82.9 1.9 6.4E-05 37.3 5.8 61 485-549 15-75 (115)
46 2igi_A Oligoribonuclease; RNAs 82.4 1.5 5E-05 40.9 5.3 47 50-120 4-50 (180)
47 2dgp_A Bruno-like 4, RNA bindi 82.2 2 7E-05 36.0 5.7 61 484-548 11-78 (106)
48 1wex_A Hypothetical protein (r 81.6 4 0.00014 34.9 7.4 59 486-548 15-74 (104)
49 2ytc_A PRE-mRNA-splicing facto 81.5 2.7 9.3E-05 33.6 6.0 57 485-545 11-68 (85)
50 2dnz_A Probable RNA-binding pr 81.3 3.5 0.00012 33.6 6.7 60 485-548 4-70 (95)
51 2e5h_A Zinc finger CCHC-type a 81.2 3 0.0001 34.0 6.2 61 484-548 14-81 (94)
52 2dhg_A TRNA selenocysteine ass 81.2 3.2 0.00011 34.6 6.5 62 484-548 7-74 (104)
53 2dgu_A Heterogeneous nuclear r 81.1 2.9 9.8E-05 35.0 6.2 58 486-548 11-68 (103)
54 3bs9_A Nucleolysin TIA-1 isofo 81.0 3.1 0.00011 33.3 6.1 59 486-548 6-71 (87)
55 2dnh_A Bruno-like 5, RNA bindi 80.9 4.9 0.00017 33.5 7.6 61 485-549 14-80 (105)
56 2dnq_A RNA-binding protein 4B; 80.3 3.7 0.00013 33.3 6.5 58 486-548 8-65 (90)
57 2d9p_A Polyadenylate-binding p 79.9 3.9 0.00013 34.0 6.6 60 485-548 14-78 (103)
58 2dgv_A HnRNP M, heterogeneous 79.7 4 0.00014 33.1 6.5 60 485-548 7-71 (92)
59 2ywk_A Putative RNA-binding pr 79.5 5.4 0.00018 32.5 7.3 60 485-548 15-80 (95)
60 2div_A TRNA selenocysteine ass 79.4 3.2 0.00011 34.2 5.9 59 486-548 9-75 (99)
61 2cqi_A Nucleolysin TIAR; RNA r 79.3 4.9 0.00017 33.4 7.1 60 485-548 14-78 (103)
62 1wf1_A RNA-binding protein RAL 79.3 9.9 0.00034 32.0 9.1 58 486-548 27-85 (110)
63 2kxn_B Transformer-2 protein h 78.7 3.3 0.00011 36.7 6.0 62 483-548 43-111 (129)
64 2do4_A Squamous cell carcinoma 78.5 4.8 0.00016 33.3 6.7 60 485-548 16-81 (100)
65 2cpz_A CUG triplet repeat RNA- 78.3 4.3 0.00015 34.6 6.5 60 485-548 24-90 (115)
66 2khc_A Testis-specific RNP-typ 78.3 4.7 0.00016 34.5 6.8 60 484-547 38-104 (118)
67 2cpj_A Non-POU domain-containi 78.1 5.3 0.00018 33.0 6.8 60 485-548 14-74 (99)
68 2cq1_A PTB-like protein L; RRM 78.0 5.7 0.00019 33.7 7.1 58 486-547 15-73 (101)
69 2do0_A HnRNP M, heterogeneous 77.7 5.3 0.00018 33.8 6.9 60 485-548 14-79 (114)
70 2cpx_A Hypothetical protein FL 77.6 4.2 0.00014 34.5 6.2 64 485-548 24-90 (115)
71 3s7r_A Heterogeneous nuclear r 77.5 6.4 0.00022 31.5 7.0 55 485-543 10-71 (87)
72 2qxf_A Exodeoxyribonuclease I; 77.3 2.9 0.0001 45.8 6.3 96 315-432 87-200 (482)
73 2cph_A RNA binding motif prote 77.2 4.4 0.00015 33.8 6.2 57 485-545 14-78 (107)
74 2jrs_A RNA-binding protein 39; 77.2 7.4 0.00025 33.0 7.7 60 485-548 25-91 (108)
75 2e44_A Insulin-like growth fac 76.7 4.6 0.00016 33.1 6.0 61 484-548 13-77 (96)
76 1why_A Hypothetical protein ri 76.6 5 0.00017 33.0 6.2 60 486-549 17-77 (97)
77 3ucg_A Polyadenylate-binding p 76.4 5.1 0.00018 32.1 6.2 57 486-547 6-69 (89)
78 1x4e_A RNA binding motif, sing 76.4 5 0.00017 32.0 6.0 59 486-548 5-70 (85)
79 3mdf_A Peptidyl-prolyl CIS-tra 76.3 5.3 0.00018 31.7 6.1 60 485-548 6-72 (85)
80 2cqg_A TDP-43, TAR DNA-binding 76.1 6.5 0.00022 32.6 6.9 56 484-543 13-75 (103)
81 2la4_A Nuclear and cytoplasmic 76.0 5.3 0.00018 33.1 6.3 60 485-548 26-86 (101)
82 1fjc_A Nucleolin RBD2, protein 75.8 2.5 8.6E-05 34.7 4.1 57 485-548 15-76 (96)
83 2jvo_A Nucleolar protein 3; nu 75.6 4.6 0.00016 34.4 5.9 59 485-548 30-88 (108)
84 3lqv_A PRE-mRNA branch site pr 75.4 7.1 0.00024 33.1 7.1 60 485-548 7-70 (115)
85 2cqd_A RNA-binding region cont 75.2 4.3 0.00015 34.6 5.7 58 485-546 16-80 (116)
86 2la6_A RNA-binding protein FUS 75.1 6 0.00021 32.6 6.4 63 482-548 9-86 (99)
87 3r27_A HnRNP L, heterogeneous 74.9 7.5 0.00026 33.3 7.0 59 486-548 21-80 (100)
88 1sjq_A Polypyrimidine tract-bi 74.7 5.5 0.00019 34.4 6.1 58 486-547 16-74 (105)
89 2kt5_A RNA and export factor-b 74.6 6.3 0.00022 34.0 6.6 63 482-548 31-99 (124)
90 4a8x_A RNA-binding protein wit 74.6 5.3 0.00018 31.9 5.7 59 486-548 4-70 (88)
91 1whw_A Hypothetical protein ri 74.6 4.6 0.00016 33.2 5.5 59 486-548 8-73 (99)
92 3ulh_A THO complex subunit 4; 74.3 5.3 0.00018 33.4 5.9 62 483-548 26-93 (107)
93 3tr8_A Oligoribonuclease; tran 73.8 3.3 0.00011 39.5 4.9 69 323-427 103-175 (186)
94 2xnq_A Nuclear polyadenylated 73.7 7.7 0.00026 32.2 6.7 59 485-548 21-80 (97)
95 1oo0_B CG8781-PA, drosophila Y 73.7 6 0.0002 33.3 6.1 60 485-548 25-91 (110)
96 3pgw_A U1-A; protein-RNA compl 73.5 5.3 0.00018 39.4 6.6 63 486-548 9-75 (282)
97 1u6f_A Tcubp1, RNA-binding pro 73.4 6.5 0.00022 34.6 6.5 60 485-548 41-107 (139)
98 1h2v_Z 20 kDa nuclear CAP bind 73.2 7.3 0.00025 35.1 6.9 60 485-548 38-104 (156)
99 2ad9_A Polypyrimidine tract-bi 73.1 7 0.00024 34.5 6.5 58 486-547 31-89 (119)
100 2qxf_A Exodeoxyribonuclease I; 73.0 3.3 0.00011 45.4 5.3 49 48-120 6-54 (482)
101 2gui_A DNA polymerase III epsi 72.9 2.8 9.6E-05 39.5 4.2 50 51-120 9-58 (194)
102 2hzc_A Splicing factor U2AF 65 72.8 4.8 0.00016 32.1 5.1 62 486-548 6-75 (87)
103 3ex7_B RNA-binding protein 8A; 72.7 5.7 0.00019 34.3 5.8 60 486-549 22-88 (126)
104 2gbz_A Oligoribonuclease; ORN, 72.6 2.8 9.7E-05 39.7 4.1 47 49-120 7-54 (194)
105 3md1_A Nuclear and cytoplasmic 72.1 6.7 0.00023 30.9 5.7 56 489-548 4-66 (83)
106 3tr8_A Oligoribonuclease; tran 72.0 5.7 0.0002 37.8 6.1 17 49-65 7-23 (186)
107 2dgs_A DAZ-associated protein 71.9 10 0.00034 31.2 7.0 58 485-547 9-73 (99)
108 1x4a_A Splicing factor, argini 71.8 9.1 0.00031 32.1 6.8 60 485-548 21-84 (109)
109 1uaw_A Mouse-musashi-1; RNP-ty 71.4 5.3 0.00018 31.1 4.9 54 489-546 3-63 (77)
110 1p27_B RNA-binding protein 8A; 71.4 11 0.00036 31.4 7.1 59 486-548 23-88 (106)
111 1owx_A Lupus LA protein, SS-B, 71.3 4.9 0.00017 35.8 5.1 55 486-547 18-78 (121)
112 1w0h_A 3'-5' exonuclease ERI1; 71.3 5.1 0.00018 37.8 5.6 49 52-120 11-59 (204)
113 2fy1_A RNA-binding motif prote 71.0 6.1 0.00021 34.0 5.6 59 486-548 7-71 (116)
114 2g4b_A Splicing factor U2AF 65 71.0 13 0.00044 33.2 8.1 63 482-548 90-159 (172)
115 2err_A Ataxin-2-binding protei 71.0 8.5 0.00029 32.6 6.5 61 484-548 27-92 (109)
116 1x4g_A Nucleolysin TIAR; struc 70.9 7.6 0.00026 32.7 6.1 60 485-548 24-84 (109)
117 2lea_A Serine/arginine-rich sp 70.7 4.2 0.00014 36.2 4.6 61 484-548 45-112 (135)
118 2dh8_A DAZ-associated protein 70.6 12 0.00039 31.2 7.2 56 485-544 15-77 (105)
119 2xri_A ERI1 exoribonuclease 3; 70.5 4.8 0.00016 39.0 5.3 48 51-120 31-78 (224)
120 2lxi_A RNA-binding protein 10; 70.5 1.9 6.4E-05 35.7 2.0 55 487-545 2-64 (91)
121 2dng_A Eukaryotic translation 70.5 7.4 0.00025 32.3 5.9 58 484-547 13-77 (103)
122 2cpd_A Apobec-1 stimulating pr 70.4 11 0.00038 31.0 6.9 62 485-549 14-75 (99)
123 2cqb_A Peptidyl-prolyl CIS-tra 70.3 4.9 0.00017 33.3 4.7 60 485-548 11-77 (102)
124 2hvz_A Splicing factor, argini 70.1 6.7 0.00023 32.4 5.5 57 489-549 3-61 (101)
125 4fxv_A ELAV-like protein 1; RN 70.0 7.2 0.00025 32.7 5.7 57 488-548 21-84 (99)
126 2ku7_A MLL1 PHD3-CYP33 RRM chi 69.6 9.1 0.00031 33.4 6.6 61 483-547 60-127 (140)
127 2cq4_A RNA binding motif prote 69.4 9.4 0.00032 32.3 6.4 58 486-548 25-89 (114)
128 1x4h_A RNA-binding protein 28; 69.2 8.4 0.00029 32.3 6.0 57 486-546 15-78 (111)
129 2ek1_A RNA-binding protein 12; 68.4 7.1 0.00024 31.7 5.3 60 485-548 14-80 (95)
130 1x5o_A RNA binding motif, sing 67.6 12 0.0004 31.7 6.6 60 486-549 25-90 (114)
131 2x1f_A MRNA 3'-END-processing 67.5 8.5 0.00029 31.5 5.6 58 487-548 3-67 (96)
132 3u3y_B Three prime repair exon 67.2 4.8 0.00016 41.6 4.7 73 52-161 13-101 (314)
133 2cqh_A IGF-II mRNA-binding pro 66.7 5.1 0.00017 32.6 4.0 58 486-547 8-66 (93)
134 1fxl_A Paraneoplastic encephal 66.5 10 0.00036 33.5 6.4 58 487-548 3-67 (167)
135 4f25_A Polyadenylate-binding p 66.3 10 0.00034 32.5 6.0 57 488-548 7-68 (115)
136 1x4d_A Matrin 3; structural ge 66.1 11 0.00039 32.0 6.2 58 486-547 15-74 (102)
137 1b7f_A Protein (SXL-lethal pro 66.0 12 0.00042 33.2 6.8 61 484-548 87-154 (168)
138 1wi8_A EIF-4B, eukaryotic tran 65.5 9.3 0.00032 31.8 5.5 58 485-548 14-79 (104)
139 1x5t_A Splicing factor 3B subu 65.3 6.6 0.00022 32.0 4.4 59 486-548 5-71 (96)
140 1x4f_A Matrin 3; structural ge 65.0 15 0.00051 31.9 6.9 59 485-547 24-84 (112)
141 3s8s_A Histone-lysine N-methyl 64.4 12 0.0004 32.1 6.0 60 486-549 6-72 (110)
142 2cqp_A RNA-binding protein 12; 64.2 13 0.00043 30.4 6.0 63 484-548 13-80 (98)
143 2e5j_A Methenyltetrahydrofolat 64.2 17 0.00059 29.7 6.9 61 485-548 18-79 (97)
144 3p5t_L Cleavage and polyadenyl 63.9 6.6 0.00023 31.9 4.1 56 489-548 4-68 (90)
145 2jwn_A Embryonic polyadenylate 63.7 7.8 0.00027 33.3 4.8 57 486-547 36-99 (124)
146 1rk8_A CG8781-PA, CG8781-PA pr 63.4 13 0.00045 33.8 6.5 59 486-548 72-137 (165)
147 2kfn_A Klenow fragment of DNA 63.2 11 0.00038 42.3 7.1 102 316-435 82-195 (605)
148 2dgw_A Probable RNA-binding pr 63.0 14 0.00047 29.8 5.9 58 484-547 8-71 (91)
149 3md3_A Nuclear and cytoplasmic 62.9 13 0.00043 32.9 6.2 58 488-549 2-65 (166)
150 2kn4_A Immunoglobulin G-bindin 62.8 12 0.0004 33.6 6.0 60 485-548 69-135 (158)
151 1whx_A Hypothetical protein ri 62.6 7.6 0.00026 33.1 4.4 59 486-548 10-69 (111)
152 2dis_A Unnamed protein product 62.6 8.2 0.00028 32.3 4.6 57 486-546 8-73 (109)
153 1zbh_A 3'-5' exonuclease ERI1; 62.4 9.8 0.00034 38.7 6.0 50 51-120 78-127 (299)
154 2yh0_A Splicing factor U2AF 65 62.2 26 0.00089 32.0 8.5 61 484-548 112-179 (198)
155 2f3j_A RNA and export factor b 61.2 11 0.00039 35.1 5.7 62 483-548 85-152 (177)
156 2kvi_A Nuclear polyadenylated 61.2 14 0.00047 30.3 5.7 58 486-548 10-68 (96)
157 1fxl_A Paraneoplastic encephal 61.1 17 0.00057 32.1 6.7 62 484-549 86-154 (167)
158 2i2y_A Fusion protein consists 61.0 18 0.00063 32.1 7.0 60 485-548 72-133 (150)
159 1p1t_A Cleavage stimulation fa 61.0 9.9 0.00034 31.4 4.8 59 486-548 8-73 (104)
160 1wlj_A Interferon stimulated g 60.9 4.9 0.00017 37.8 3.2 43 50-120 4-46 (189)
161 1s79_A Lupus LA protein; RRM, 60.8 14 0.00049 31.1 5.8 54 486-543 11-70 (103)
162 2cpf_A RNA binding motif prote 60.6 12 0.0004 30.6 5.2 59 486-548 5-73 (98)
163 2adc_A Polypyrimidine tract-bi 60.2 13 0.00045 35.6 6.2 60 485-548 33-95 (229)
164 2nlw_A Eukaryotic translation 60.2 25 0.00084 29.3 7.2 61 485-549 14-85 (105)
165 2cpe_A RNA-binding protein EWS 59.8 14 0.00047 31.2 5.6 64 485-548 14-88 (113)
166 2e5g_A U6 snRNA-specific termi 59.7 15 0.00052 29.8 5.7 57 485-547 7-66 (94)
167 1wez_A HnRNP H', FTP-3, hetero 59.0 16 0.00056 30.5 5.9 57 481-542 10-72 (102)
168 2ki2_A SS-DNA binding protein 58.8 12 0.0004 30.1 4.7 56 488-548 3-65 (90)
169 1whr_A Hypothetical KIAA1002 p 58.8 14 0.00047 33.0 5.5 44 194-262 29-72 (124)
170 2j76_E EIF-4B, EIF4B, eukaryot 58.7 7.8 0.00027 32.2 3.7 59 484-548 17-83 (100)
171 3md3_A Nuclear and cytoplasmic 58.6 20 0.0007 31.4 6.8 60 485-548 86-152 (166)
172 3nmr_A Cugbp ELAV-like family 58.2 22 0.00074 31.7 7.0 61 485-549 94-160 (175)
173 1fje_B Nucleolin RBD12, protei 58.2 13 0.00045 33.4 5.5 58 484-548 97-159 (175)
174 2xs2_A Deleted in azoospermia- 57.7 23 0.0008 29.0 6.6 54 486-543 9-68 (102)
175 3cg7_A CRN-4, cell death-relat 57.2 10 0.00035 38.8 5.0 49 52-120 20-69 (308)
176 2krb_A Eukaryotic translation 57.2 12 0.00042 29.5 4.5 58 487-548 2-70 (81)
177 2jvr_A Nucleolar protein 3; RN 55.0 13 0.00044 32.2 4.6 61 484-548 26-90 (111)
178 2rs2_A Musashi-1, RNA-binding 54.9 13 0.00045 31.4 4.6 57 485-545 24-87 (109)
179 3mxm_B Three prime repair exon 54.8 8 0.00027 38.1 3.6 46 52-120 13-74 (242)
180 3pgw_A U1-A; protein-RNA compl 54.4 21 0.00073 34.9 6.8 60 485-548 206-267 (282)
181 1iqt_A AUF1, heterogeneous nuc 54.4 9.3 0.00032 29.5 3.3 51 489-543 2-59 (75)
182 2g4b_A Splicing factor U2AF 65 54.2 14 0.00047 33.1 4.9 61 486-547 4-72 (172)
183 1b7f_A Protein (SXL-lethal pro 53.2 15 0.00051 32.6 4.9 59 486-548 3-68 (168)
184 1fje_B Nucleolin RBD12, protei 53.0 19 0.00065 32.3 5.7 63 484-547 11-75 (175)
185 2cq2_A Hypothetical protein LO 52.4 21 0.00071 31.2 5.5 59 487-549 26-87 (114)
186 2qfj_A FBP-interacting repress 52.3 21 0.00073 33.1 6.1 58 487-548 29-93 (216)
187 3n9u_C Cleavage and polyadenyl 51.9 21 0.00072 32.5 5.8 59 486-548 55-122 (156)
188 2mss_A Protein (musashi1); RNA 51.6 11 0.00039 29.0 3.4 51 489-543 2-59 (75)
189 2lkz_A RNA-binding protein 5; 51.6 17 0.00058 30.3 4.7 58 486-547 9-75 (95)
190 1l3k_A Heterogeneous nuclear r 51.2 24 0.00083 32.1 6.2 57 484-544 11-74 (196)
191 3q2s_C Cleavage and polyadenyl 51.0 24 0.00082 34.2 6.4 59 486-548 68-135 (229)
192 1x4b_A Heterogeneous nuclear r 50.3 20 0.0007 30.2 5.1 56 485-544 26-88 (116)
193 2yh0_A Splicing factor U2AF 65 50.2 19 0.00064 33.0 5.2 60 487-547 5-72 (198)
194 1wel_A RNA-binding protein 12; 50.1 30 0.001 29.7 6.2 56 484-543 23-85 (124)
195 2cpy_A RNA-binding protein 12; 49.9 15 0.00051 31.3 4.1 58 482-543 11-75 (114)
196 3nmr_A Cugbp ELAV-like family 49.0 21 0.00072 31.7 5.3 58 487-548 4-70 (175)
197 3sde_A Paraspeckle component 1 48.3 27 0.00094 34.1 6.4 61 484-548 20-81 (261)
198 2qfj_A FBP-interacting repress 48.2 29 0.00099 32.1 6.3 59 486-548 125-190 (216)
199 1fj7_A Nucleolin RBD1, protein 48.2 37 0.0013 27.7 6.3 62 486-548 17-80 (101)
200 1zbu_A ERI-1 homolog, 3'-5' ex 47.8 12 0.00042 39.0 3.9 50 51-120 128-177 (349)
201 3ns6_A Eukaryotic translation 47.4 14 0.00047 30.7 3.4 60 486-549 6-78 (100)
202 3pgw_S U1-70K; protein-RNA com 46.2 21 0.0007 38.4 5.4 59 486-548 102-167 (437)
203 1wg5_A Heterogeneous nuclear r 46.1 33 0.0011 28.5 5.7 58 483-544 12-76 (104)
204 1y97_A Three prime repair exon 46.0 10 0.00034 36.8 2.7 47 51-120 10-69 (238)
205 1qm9_A Polypyrimidine tract-bi 46.0 29 0.00099 31.9 5.9 59 486-548 120-181 (198)
206 2adc_A Polypyrimidine tract-bi 45.9 31 0.0011 32.9 6.2 59 486-548 151-212 (229)
207 3egn_A RNA-binding protein 40; 45.2 52 0.0018 28.8 7.2 64 486-549 45-116 (143)
208 2dnl_A Cytoplasmic polyadenyla 44.4 15 0.00052 31.2 3.3 55 486-545 8-72 (114)
209 3tyt_A Heterogeneous nuclear r 44.2 24 0.00084 33.4 5.1 60 486-549 123-189 (205)
210 2dit_A HIV TAT specific factor 43.9 44 0.0015 28.1 6.2 67 482-548 11-87 (112)
211 2e5i_A Heterogeneous nuclear r 43.7 48 0.0016 29.2 6.6 61 486-550 23-87 (124)
212 1x5p_A Negative elongation fac 43.0 57 0.002 26.4 6.7 57 486-548 15-72 (97)
213 1qm9_A Polypyrimidine tract-bi 42.3 26 0.00088 32.3 4.8 60 486-549 3-65 (198)
214 2lmi_A GRSF-1, G-rich sequence 42.1 22 0.00074 29.8 3.9 56 484-543 9-73 (107)
215 2voo_A Lupus LA protein; RNA-b 41.1 28 0.00095 32.8 4.9 55 486-544 109-169 (193)
216 3d2w_A TAR DNA-binding protein 40.0 28 0.00096 28.2 4.2 52 484-539 9-62 (89)
217 2hgm_A HNRPF protein, heteroge 39.4 66 0.0022 28.3 6.8 57 482-543 38-102 (126)
218 4f02_A Polyadenylate-binding p 39.0 48 0.0016 31.1 6.3 57 487-547 16-79 (213)
219 3tyt_A Heterogeneous nuclear r 38.5 41 0.0014 31.8 5.7 60 486-549 4-66 (205)
220 1yt3_A Ribonuclease D, RNAse D 38.0 66 0.0022 33.5 7.7 101 315-435 65-172 (375)
221 3u1l_A PRE-mRNA-splicing facto 37.6 52 0.0018 32.4 6.4 64 486-549 134-203 (240)
222 1wg1_A KIAA1579 protein, homol 37.4 27 0.00091 28.0 3.6 58 486-548 5-63 (88)
223 2cpm_A Sperm-associated antige 37.1 91 0.0031 26.3 6.9 28 240-269 30-57 (94)
224 1wf0_A TDP-43, TAR DNA-binding 36.9 26 0.00087 28.0 3.4 50 486-539 5-56 (88)
225 2cjk_A Nuclear polyadenylated 35.9 43 0.0015 29.5 5.1 54 487-544 4-64 (167)
226 1sjr_A Polypyrimidine tract-bi 35.8 46 0.0016 31.0 5.3 59 487-549 47-108 (164)
227 2e6m_A Werner syndrome ATP-dep 35.5 77 0.0026 29.7 7.1 101 318-434 90-196 (208)
228 2ghp_A U4/U6 snRNA-associated 35.1 37 0.0013 33.3 5.0 59 485-548 209-276 (292)
229 3smz_A Protein raver-1, ribonu 33.6 73 0.0025 31.0 6.9 59 486-548 95-160 (284)
230 2db1_A Heterogeneous nuclear r 33.2 48 0.0016 28.3 4.8 55 485-543 16-79 (118)
231 1vk0_A Hypothetical protein; h 32.7 41 0.0014 32.3 4.7 103 314-431 98-205 (206)
232 2dnn_A RNA-binding protein 12; 32.5 41 0.0014 28.7 4.1 53 485-542 15-73 (109)
233 1l3k_A Heterogeneous nuclear r 31.3 68 0.0023 29.0 5.8 54 486-543 104-164 (196)
234 4f02_A Polyadenylate-binding p 30.3 61 0.0021 30.4 5.4 59 486-548 103-166 (213)
235 2hgl_A HNRPF protein, heteroge 29.4 48 0.0016 29.5 4.2 56 484-543 42-106 (136)
236 2cjk_A Nuclear polyadenylated 28.3 51 0.0017 29.0 4.2 55 485-543 86-147 (167)
237 3saf_A Exosome component 10; e 27.9 1.5E+02 0.0052 31.6 8.5 99 317-435 175-279 (428)
238 3smz_A Protein raver-1, ribonu 27.7 81 0.0028 30.7 6.0 60 485-548 183-249 (284)
239 2bz2_A Negative elongation fac 25.6 1E+02 0.0034 26.5 5.5 58 485-548 38-96 (121)
240 2m2b_A RNA-binding protein 10; 25.4 75 0.0026 27.4 4.7 58 486-548 23-89 (131)
241 2ghp_A U4/U6 snRNA-associated 25.4 84 0.0029 30.7 5.6 55 485-543 40-99 (292)
242 2dha_A FLJ20171 protein; RRM d 25.3 54 0.0018 28.6 3.7 58 486-543 23-86 (123)
243 2lcw_A RNA-binding protein FUS 30.4 16 0.00054 31.0 0.0 59 486-548 7-80 (116)
244 3sde_A Paraspeckle component 1 24.0 1E+02 0.0035 29.8 5.9 58 486-547 96-159 (261)
245 4dfk_A DNA polymerase I, therm 24.0 83 0.0028 34.7 5.7 72 325-433 57-128 (540)
246 3v4m_A Splicing factor U2AF 65 23.8 61 0.0021 27.3 3.7 48 501-548 26-82 (105)
247 1vd2_A Protein kinase C, IOTA 23.4 74 0.0025 26.6 4.0 57 489-545 17-74 (89)
248 3ue2_A Poly(U)-binding-splicin 22.7 65 0.0022 27.9 3.7 53 495-548 31-94 (118)
249 3zzy_A Polypyrimidine tract-bi 22.2 1.2E+02 0.004 26.9 5.4 58 488-549 30-90 (130)
250 3s6e_A RNA-binding protein 39; 21.5 1.5E+02 0.0053 25.3 5.9 48 501-548 28-78 (114)
251 2dnr_A Synaptojanin-1; RRM dom 21.2 1.1E+02 0.0036 25.8 4.5 45 497-542 22-66 (91)
No 1
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.3e-103 Score=872.17 Aligned_cols=479 Identities=22% Similarity=0.339 Sum_probs=332.5
Q ss_pred eEEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCC--CCCCCCHHHHHHHHHhhhccccceeEEeeeeecCC-
Q 007029 29 IKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHR--VSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA- 105 (621)
Q Consensus 29 i~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~--~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~- 105 (621)
|||||++||+++||.|+++|++|+|||||+|||||...+... .+.++|+++||+++|.+|+.|+|||+|||+|++++
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 699999999999999999999999999999999996543211 24589999999999999999999999999999987
Q ss_pred -CceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCccccccc--
Q 007029 106 -SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT-- 182 (621)
Q Consensus 106 -~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~-- 182 (621)
++|.+||||||+||+.. +.+.+|++|+||++||+||++||||||+|+++|||||+++||+.+++++.++....+..
T Consensus 82 ~~~~~~~~fNf~~fp~~~-~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~~~~~ 160 (507)
T 3d45_A 82 DSKHVTKSFNFYVFPKPF-SRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQANGAGA 160 (507)
T ss_dssp SSCEEEEEEEEEBCCCCC-SSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC----------
T ss_pred CCceeEEeEEEEecCccc-cccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhhcccc
Confidence 68999999999999852 23467899999999999999999999999999999999999999999998765533110
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhh
Q 007029 183 KSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262 (621)
Q Consensus 183 ~~~~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~~~ 262 (621)
.......+++++++|+++++++|++|+++... +++++++||++||+||||+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~-------------------------~~l~i~~~n~~~r~Lv~q~l~~~ 215 (507)
T 3d45_A 161 LAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEK-------------------------RSLELDPCTGFQRKLIYQTLSWK 215 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHHHHHHhcCCC-------------------------CccccCCCcHHHHHHHHHHHHHh
Confidence 01111125678899999999999999976321 23778899999999999999999
Q ss_pred cCCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHHHHHHHh
Q 007029 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 342 (621)
Q Consensus 263 ~~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~~ 342 (621)
||+++.+......+....+.| .+.+++++..++++.+..+++.+.+++|||+||++|++++|||||||||+||||||++
T Consensus 216 fp~~v~~~~~~~~~~~~~i~v-~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~ 294 (507)
T 3d45_A 216 YPKGIHVETLETDKKERHIVI-SKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQ 294 (507)
T ss_dssp -------------------------------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHH
T ss_pred CCCceEeeeccCCCcceeEEE-EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHH
Confidence 999875422111222233433 3344555555555555566788999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCccc---ccCchHHHHHHHHhcCCCCceeecCCCC-C----CCCccc
Q 007029 343 FLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK---KMTNISATIAYLKNRFFAPIEMEIPNQA-N----ENEGKI 414 (621)
Q Consensus 343 F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~---~~~~L~~~~~~l~~~~~~~~~vei~~~~-~----~~~~he 414 (621)
|+||||++++|||+.+|++||.|||||||++.. ++. ..++|+++++.|.+.++.+|+|+++... + .+..|+
T Consensus 295 F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~-~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~He 373 (507)
T 3d45_A 295 FYCPLPADLNEFKEMAICVFPRLLDTKLMASTQ-PFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHE 373 (507)
T ss_dssp HTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTST-THHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCC
T ss_pred hcCCCCCCHHHHHHHHHHhCCceeEhHhhhhcC-ccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCccc
Confidence 999999999999999999999999999998763 333 4789999999999888889999887542 2 345799
Q ss_pred chhhHHHHHHHHHHHHHHhcc---CCCCCCCCcHHHHhhhhhhhccccCCCCCCCCCCCccccCCCCCCCCCCcCCEEEE
Q 007029 415 HGHNVVKICQLFGKLCSILKI---TPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFL 491 (621)
Q Consensus 415 AGyDA~mTG~vFikL~~~L~~---~~~~~~s~~~~~~~~l~~~~N~l~~~~~~~~~~~d~~~~~l~g~~~~~~~~~vv~~ 491 (621)
|||||||||+||++||++||. ..+... ...+.+|++|+|+|++ ++ +.|++|+||+|+|+.++|++|++
T Consensus 374 AGyDA~mTg~~F~kl~~~l~~~~~~~~~~~---~~~~~~l~~~~N~l~l--~~---~~d~~~i~l~g~d~~~~R~~vl~- 444 (507)
T 3d45_A 374 AGYDAYITGLCFISMANYLGSLLSPPKMCV---SARSKLIEPFFNKLFL--MR---VMDIPYLNLEGPDLQPKRDHVLH- 444 (507)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------------CCSCSSSGGGTTEECC--CS---BSSCCSEESSSCCCCCCGGGEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccc---ccchhHHHhhheeeee--ec---cCCCceeeCCCCCCCCCcCcEEE-
Confidence 999999999999999999985 111100 1235689999999999 55 56899999999999999999666
Q ss_pred eccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 492 WGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 492 ~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
|+||++|+..+|.++++ .|| .++|+|||+|||||+|+++++|+++|++++++.
T Consensus 445 v~f~~~~~~~~i~~~fs----~fg-~v~V~widdt~a~V~~~~~~~a~~~l~~~~~~~ 497 (507)
T 3d45_A 445 VTFPKEWKTSDLYQLFS----AFG-NIQISWIDDTSAFVSLSQPEQVQIAVNTSKYAE 497 (507)
T ss_dssp EECCTTCCHHHHHHHGG----GGC-CCEEEECSSSEEEEECSCHHHHHHHHHHHTTCS
T ss_pred EeCCCCCCHHHHHHHHH----hcC-CEEEEEEcCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 89999999999888775 566 389999999999999999999999999998764
No 2
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=2.3e-90 Score=754.75 Aligned_cols=406 Identities=22% Similarity=0.350 Sum_probs=260.6
Q ss_pred EEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCC--CCCCCCHHHHHHHHHhhhccccceeEEeeeeecCC--
Q 007029 30 KQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHR--VSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA-- 105 (621)
Q Consensus 30 ~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~--~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~-- 105 (621)
|||||+||++.|+.|+++|++|+|||||+||||+...++.+ .+.++|+++||+++|.+|+.|+|||+|||+|++++
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 79999999999999999999999999999999997654322 25789999999999999999999999999999987
Q ss_pred CceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCccccccccC-
Q 007029 106 SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKS- 184 (621)
Q Consensus 106 ~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~~~- 184 (621)
++|.+||||||+||+. .....++++|+||++||+||++||||||+|+++||||++++||+.+|+++.++....+....
T Consensus 81 ~~~~~~~fNF~~FP~~-~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~~~~~ 159 (430)
T 2a1r_A 81 SKYITKSFNFYVFPKP-FNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGAL 159 (430)
T ss_dssp TEEEEEEEEEEBCCCC-SSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC----------------
T ss_pred CceeEEEEEEEecccc-ccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcccccc
Confidence 5799999999999985 22345678999999999999999999999999999999999999999888765443211000
Q ss_pred -------C-CCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHH
Q 007029 185 -------S-SSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVL 256 (621)
Q Consensus 185 -------~-~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~ 256 (621)
+ .+...+.++++|+++++++|++|+++... +++++++|+++|++|||
T Consensus 160 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~-------------------------~~l~l~~~~~~qr~Lv~ 214 (430)
T 2a1r_A 160 SYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEEN-------------------------KNLDLEPCTGFQRKLIY 214 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCC-------------------------CccccCCCcHHHHHHHH
Confidence 0 00123456689999999999999875321 34888999999999999
Q ss_pred HHHHhhcCCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHH
Q 007029 257 KMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDF 336 (621)
Q Consensus 257 q~l~~~~~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL 336 (621)
|+++++||+++.+..-...+....++|...+. +++..++++....+++.+.+++|||+||++|+++||||||||||+||
T Consensus 215 q~l~~~fp~~~~~~~~~~~~~~~~v~v~k~~~-e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl 293 (430)
T 2a1r_A 215 QTLSWKYPKGIHVETLETEKKERYIVISKVDE-EERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDV 293 (430)
T ss_dssp -------------------------------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHH
T ss_pred HHHHHhCCCceeeeeeeecCCceEEEEEeCCH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHH
Confidence 99999999976432111112223354544433 33333332223335667899999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhC--cccccCchHHHHHHHHhcCCCCceeecCCCC-C----C
Q 007029 337 TFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIG--PVKKMTNISATIAYLKNRFFAPIEMEIPNQA-N----E 409 (621)
Q Consensus 337 ~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~--~~~~~~~L~~~~~~l~~~~~~~~~vei~~~~-~----~ 409 (621)
||+|++|+||||++|+|||+.+|++||.|||||||++..+ .+...++|+++++.+++.++.+|+|+++... + .
T Consensus 294 ~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~ 373 (430)
T 2a1r_A 294 MHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTAS 373 (430)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC----
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCC
Confidence 9999999999999999999999999999999999987642 2234689999999999989999999987532 2 2
Q ss_pred CCcccchhhHHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccCCCCC
Q 007029 410 NEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGS 464 (621)
Q Consensus 410 ~~~heAGyDA~mTG~vFikL~~~L~~~~~~~~s~~~~~~~~l~~~~N~l~~~~~~ 464 (621)
+..|||||||||||+||++||++||..-........+.+++|+||+|||++ ||
T Consensus 374 ~~~HeAGyDa~mTG~vFi~l~~~l~~~~~~~~~~~~~~~~~~~~~~n~~~~--~r 426 (430)
T 2a1r_A 374 EQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFNKLFL--MR 426 (430)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHGGGSSSCCSCCCSSCTTSGGGSSCCC-----
T ss_pred CCccchHHHHHHHHHHHHHHHHHHhhccCCCcccccchhHHHHHhhhhhhe--ee
Confidence 456999999999999999999999883211111233477899999999999 77
No 3
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-47 Score=393.06 Aligned_cols=249 Identities=18% Similarity=0.268 Sum_probs=200.2
Q ss_pred ccceEEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCC
Q 007029 26 HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA 105 (621)
Q Consensus 26 ~~~i~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~ 105 (621)
...|+|||++||+++++.|+++|++|+|||||+||||+...+ .....+++++||+++|.||+.+.|||+|||+|++++
T Consensus 9 ~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp--~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g 86 (285)
T 4gmj_B 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARP--IGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG 86 (285)
T ss_dssp -CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC--TTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTS
T ss_pred CCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCC--CCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCC
Confidence 447999999999999999999999999999999999997543 356678999999999999999999999999999987
Q ss_pred ---CceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCccccccc
Q 007029 106 ---SKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHAT 182 (621)
Q Consensus 106 ---~~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~ 182 (621)
..|.+|+|||+++|. +++|+++||+||++|||||||++++||+|....|.
T Consensus 87 ~~p~~~~~wqFNF~f~~~----------~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~el----------------- 139 (285)
T 4gmj_B 87 EYPPGTSTWQFNFKFNLT----------EDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAEL----------------- 139 (285)
T ss_dssp CCCSSCCEEEEEBCCCTT----------TSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHH-----------------
T ss_pred CcCCCeeEEEEEEEeccc----------cccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHH-----------------
Confidence 468999999996664 35799999999999999999999999998321110
Q ss_pred cCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhh
Q 007029 183 KSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262 (621)
Q Consensus 183 ~~~~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~~~ 262 (621)
++
T Consensus 140 ------------------l~------------------------------------------------------------ 141 (285)
T 4gmj_B 140 ------------------LM------------------------------------------------------------ 141 (285)
T ss_dssp ------------------HH------------------------------------------------------------
T ss_pred ------------------HH------------------------------------------------------------
Confidence 00
Q ss_pred cCCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHHHHHHHh
Q 007029 263 SDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSK 342 (621)
Q Consensus 263 ~~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~~ 342 (621)
..|. .+....++|+.|++ +|+.|+++.
T Consensus 142 -----------~sgl-----------------------------------------vl~~~v~WvtfH~~-yDf~yL~k~ 168 (285)
T 4gmj_B 142 -----------TSGV-----------------------------------------VLCEGVKWLSFHSG-YDFGYLIKI 168 (285)
T ss_dssp -----------TSSS-----------------------------------------SSCTTCEEEESSCH-HHHHHHHHH
T ss_pred -----------HhHH-----------------------------------------HhcCCCceEEecch-hhHHHHHHH
Confidence 0000 01113356888888 699999999
Q ss_pred cc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHH
Q 007029 343 FL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVK 421 (621)
Q Consensus 343 F~-gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~m 421 (621)
+. ++||++++||+..++.+||.||||||||.....++ .+|..+-+.|. .+ ..+..|+||||||+
T Consensus 169 lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~--ggL~~lA~~L~----v~---------r~g~~HqAGsDSll 233 (285)
T 4gmj_B 169 LTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLK--GGLQEVAEQLE----LE---------RIGPQHQAGSDSLL 233 (285)
T ss_dssp HHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCC--SCHHHHHHHTT----CC---------CCSCTTSHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccC--ChHHHHHHhCC----CC---------CCCCCCcchhHHHH
Confidence 98 78999999999999999999999999998766543 35666655552 11 12457999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 007029 422 ICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 460 (621)
Q Consensus 422 TG~vFikL~~~L~~~~~~~~s~~~~~~~~l~~~~N~l~~ 460 (621)
||.||.+|...+..+.-. ...|.|.||-
T Consensus 234 T~~~F~kl~~~~f~~~~~-----------~~~~~g~l~G 261 (285)
T 4gmj_B 234 TGMAFFKMREMFFEDHID-----------DAKYCGHLYG 261 (285)
T ss_dssp HHHHHHHHHHHHHTTCCC-----------HHHHTTCCTT
T ss_pred HHHHHHHHHHHHhcCCcc-----------hHHhCCEEec
Confidence 999999999988542211 2578999986
No 4
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=1.8e-44 Score=365.78 Aligned_cols=231 Identities=19% Similarity=0.298 Sum_probs=187.7
Q ss_pred ceEEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCC-CHHHHHHHHHhhhccccceeEEeeeeecCCC
Q 007029 28 PIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD-TPETAYLKAKFAAERFQILQFAICPFKLQAS 106 (621)
Q Consensus 28 ~i~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~d-t~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~ 106 (621)
.|+|||++||+++++.|+++|++|+|||||+||||+... +.+.++ ++++||+++|.||+.+.|||+|||+|+.+++
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~r---p~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~ 77 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVAR---PIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGE 77 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCC---CCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecc---cCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCC
Confidence 489999999999999999999999999999999999753 333444 7999999999999999999999999998773
Q ss_pred ---ceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCcccccccc
Q 007029 107 ---KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATK 183 (621)
Q Consensus 107 ---~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~~~~ 183 (621)
.|.+|+|||+ |+.. +++|+++||+||+++||||||+.++||||..-.|. +
T Consensus 78 ~p~~~~~wqFNF~-F~~~---------~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~el------l----------- 130 (252)
T 2d5r_A 78 YPPGTSTWQFNFK-FNLT---------EDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAEL------L----------- 130 (252)
T ss_dssp CCSSCCEEEEEBC-CCTT---------TSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHH------H-----------
T ss_pred CCCCceeEEEEEE-ECCc---------ccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHH------H-----------
Confidence 5889999999 8752 46899999999999999999999999999621111 0
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhhc
Q 007029 184 SSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFS 263 (621)
Q Consensus 184 ~~~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~~~~ 263 (621)
. . .+ +
T Consensus 131 ------------------~-------~----sg-------------------------l--------------------- 135 (252)
T 2d5r_A 131 ------------------M-------T----SG-------------------------V--------------------- 135 (252)
T ss_dssp ------------------H-------T----TT-------------------------S---------------------
T ss_pred ------------------H-------h----cC-------------------------c---------------------
Confidence 0 0 00 0
Q ss_pred CCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHHHHHHHhc
Q 007029 264 DVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKF 343 (621)
Q Consensus 264 ~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy~~F 343 (621)
+ . . ....-|.|++..|+.|+++.+
T Consensus 136 ---v---l---~-----------------------------------------------~~v~Witfhg~yDf~yL~k~L 159 (252)
T 2d5r_A 136 ---V---L---C-----------------------------------------------EGVKWLSFHSGYDFGYLIKIL 159 (252)
T ss_dssp ---S---S---S-----------------------------------------------SSCEEEESSCHHHHHHHHHHH
T ss_pred ---c---c---C-----------------------------------------------CCceEEEecCcchHHHHHHHh
Confidence 0 0 0 001223367899999999999
Q ss_pred c-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHH
Q 007029 344 L-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKI 422 (621)
Q Consensus 344 ~-gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mT 422 (621)
. .|||+++++|++.++.+||.||||||||.....+ ..+|..+.+.|.- + ..+..|+||+||++|
T Consensus 160 ~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l--~~gL~~la~~L~v--------~-----r~g~~HqAGsDsllT 224 (252)
T 2d5r_A 160 TNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNL--KGGLQEVAEQLEL--------E-----RIGPQHQAGSDSLLT 224 (252)
T ss_dssp HTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTC--CSSHHHHHHHHTC--------C-----CCSSTTSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccc--CCCHHHHHHHcCC--------C-----ccCcccchhhhHHHH
Confidence 8 6999999999999999999999999999886544 2467777777731 0 135689999999999
Q ss_pred HHHHHHHHHHhc
Q 007029 423 CQLFGKLCSILK 434 (621)
Q Consensus 423 G~vFikL~~~L~ 434 (621)
|.+|.||++.+-
T Consensus 225 ~~~F~km~~~~f 236 (252)
T 2d5r_A 225 GMAFFKMREMFF 236 (252)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 999999999873
No 5
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=3e-44 Score=373.75 Aligned_cols=249 Identities=18% Similarity=0.298 Sum_probs=196.7
Q ss_pred CCccceEEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCC-CHHHHHHHHHhhhccccceeEEeeeee
Q 007029 24 PHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFD-TPETAYLKAKFAAERFQILQFAICPFK 102 (621)
Q Consensus 24 ~~~~~i~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~d-t~eerY~~~k~~a~~f~iiQ~Gl~~f~ 102 (621)
...+.|+|||++||+++++.|+++|++|+|||||+||||+... +.+.++ ++++||+++|.||+.+.|||+|||+|+
T Consensus 18 ~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~r---p~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd 94 (333)
T 2p51_A 18 SQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVAR---PLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD 94 (333)
T ss_dssp CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCC---CCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC
T ss_pred CCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccc---cccccCCCHHHHHHHHHHhhhhccceEEEEEEEc
Confidence 4567999999999999999999999999999999999999753 334555 589999999999999999999999999
Q ss_pred cCCC---ceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCcccc
Q 007029 103 LQAS---KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVD 179 (621)
Q Consensus 103 ~~~~---~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~ 179 (621)
.+++ .|.+|+|||+ |+. .+++|+++||+||+++||||||+.++||||..-.|. +
T Consensus 95 ~~G~~p~~~~twqFNF~-F~~---------~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~el------L------- 151 (333)
T 2p51_A 95 EEGNAPVEACTWQFNFT-FNL---------QDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAEL------L------- 151 (333)
T ss_dssp TTSCCCTTCSEEEEEBC-CCT---------TTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHH------H-------
T ss_pred cCCCCCCCceeEEEEEE-ECC---------cccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHH------H-------
Confidence 8774 4899999999 775 247899999999999999999999999999621110 0
Q ss_pred ccccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHH
Q 007029 180 HATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKML 259 (621)
Q Consensus 180 ~~~~~~~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l 259 (621)
. . .+ +
T Consensus 152 ----------------------~-------~----SG-------------------------L----------------- 156 (333)
T 2p51_A 152 ----------------------I-------G----SG-------------------------L----------------- 156 (333)
T ss_dssp ----------------------H-------T----TT-------------------------S-----------------
T ss_pred ----------------------H-------h----cC-------------------------c-----------------
Confidence 0 0 00 0
Q ss_pred HhhcCCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHHHHH
Q 007029 260 EDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFI 339 (621)
Q Consensus 260 ~~~~~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~i 339 (621)
+ .. . ...-|.+++..|+.|+
T Consensus 157 -------v---l~-~-------------------------------------------------~V~Witfhg~YDfgyL 176 (333)
T 2p51_A 157 -------V---LQ-E-------------------------------------------------EVTWITFHSGYDFAYL 176 (333)
T ss_dssp -------S---SC-T-------------------------------------------------TCEEEESSCHHHHHHH
T ss_pred -------c---cC-C-------------------------------------------------CceEEEeccchhHHHH
Confidence 0 00 0 0111124578999999
Q ss_pred HHhcc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhh
Q 007029 340 HSKFL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHN 418 (621)
Q Consensus 340 y~~F~-gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyD 418 (621)
++.+. +|||++++||++.++.+||.||||||||.....++ .+|..+.+.|. + ...+..|+||+|
T Consensus 177 lK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~--ggL~~lA~~L~--------v-----~Rig~~HqAGsD 241 (333)
T 2p51_A 177 LKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNS--KGLQDIADDLQ--------I-----HRIGPQHQAGSD 241 (333)
T ss_dssp HHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCC--CCHHHHHHHTT--------C-----CCCSCTTSHHHH
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccc--CCHHHHHHHcC--------C-----CccCcchhhhhH
Confidence 99987 69999999999999999999999999998865443 46777777663 1 113678999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 007029 419 VVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 460 (621)
Q Consensus 419 A~mTG~vFikL~~~L~~~~~~~~s~~~~~~~~l~~~~N~l~~ 460 (621)
||+||.||.||++.+-... ..+.|.|.||.
T Consensus 242 SlLT~~~F~kl~~~~f~~~------------~~~~~~g~l~G 271 (333)
T 2p51_A 242 ALLTARIFFEIRSRYFDGS------------IDSRMLNQLYG 271 (333)
T ss_dssp HHHHHHHHHHHHHHHHTTS------------CCGGGTTCCTT
T ss_pred HHHHHHHHHHHHHHhcCCC------------chhhhCCEEec
Confidence 9999999999999773221 11577787775
No 6
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=9e-44 Score=366.16 Aligned_cols=253 Identities=16% Similarity=0.253 Sum_probs=190.7
Q ss_pred ccceEEeCcccHHHHHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCC-HHHHHHHHHhhhccccceeEEeeeeecC
Q 007029 26 HWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDT-PETAYLKAKFAAERFQILQFAICPFKLQ 104 (621)
Q Consensus 26 ~~~i~eVt~~NF~~~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt-~eerY~~~k~~a~~f~iiQ~Gl~~f~~~ 104 (621)
.+.|+|||++||+++++.|+++|++|+|||||+||||+...+ ...+++ +++||+++|.||+.+.|||+|||+|+++
T Consensus 13 ~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp---~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~ 89 (289)
T 1uoc_A 13 YLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARP---IGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDAN 89 (289)
T ss_dssp GGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC-------------CHHHHHHHHHHHHHTTCEEEEEEEEEECTT
T ss_pred CcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccC---CcccCCCHHHHHHHHHHhhhhccceEEEEEEEccC
Confidence 589999999999999999999999999999999999997543 334554 7899999999999999999999999998
Q ss_pred CC----ceeeEeEEEeecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCCHHHHHHHHHHhCCCccccc
Q 007029 105 AS----KVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDH 180 (621)
Q Consensus 105 ~~----~y~~~~fNF~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs~~eE~~~r~~~~~~~~~~~ 180 (621)
++ +|.+|+|||+ |+. .+++|+++||+||+++||||||++++||||..-.|. .-
T Consensus 90 g~~p~~~~~~wqFNF~-F~~---------~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~el---l~---------- 146 (289)
T 1uoc_A 90 GNKPDNGPSTWQFNFE-FDP---------KKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQL---LM---------- 146 (289)
T ss_dssp CCCCSSSCSEEEEEBC-CCT---------TCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHH---HH----------
T ss_pred CCcCCCCcceEEEEEE-ECC---------ccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHH---HH----------
Confidence 74 5899999999 875 247899999999999999999999999999621110 00
Q ss_pred cccCCCCCCCCcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHH
Q 007029 181 ATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLE 260 (621)
Q Consensus 181 ~~~~~~~~~~~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~ 260 (621)
. .+ +
T Consensus 147 -----------------------------~----sg-------------------------L------------------ 150 (289)
T 1uoc_A 147 -----------------------------D----SG-------------------------L------------------ 150 (289)
T ss_dssp -----------------------------T----SS-------------------------C------------------
T ss_pred -----------------------------h----cC-------------------------C------------------
Confidence 0 00 0
Q ss_pred hhcCCcceeeeccCCCCceeEEEEEccChHHHHHHHHHhhHHHHhhhhhcccHHHHHHHHHhCCCCEEeehhHHHHHHHH
Q 007029 261 DFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIH 340 (621)
Q Consensus 261 ~~~~~l~~~~~~~k~g~~~~~rvi~~~~~eek~~l~~e~~~~e~e~~~~~~GFr~Vi~~L~~skKpIVGHN~llDL~~iy 340 (621)
+ . .. ...-|.+++..|+.|++
T Consensus 151 ------v---l-~~-------------------------------------------------~v~Witfhg~yDfgyL~ 171 (289)
T 1uoc_A 151 ------M---M-DD-------------------------------------------------SVTWITYHAAYDLGFLI 171 (289)
T ss_dssp ------S---S-CT-------------------------------------------------TSEEEESSTTHHHHHHH
T ss_pred ------c---c-CC-------------------------------------------------CceEEEccCcchHHHHH
Confidence 0 0 00 01112245889999999
Q ss_pred Hhcc-CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccc-------------cCchHHHHHHHHhcCCCCceeecCCC
Q 007029 341 SKFL-APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKK-------------MTNISATIAYLKNRFFAPIEMEIPNQ 406 (621)
Q Consensus 341 ~~F~-gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~-------------~~~L~~~~~~l~~~~~~~~~vei~~~ 406 (621)
+.+. .|||+++++|++.++.+||.||||||||.....+.. ..+|..+.+.|. . +
T Consensus 172 k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~----v-~------- 239 (289)
T 1uoc_A 172 NILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELG----L-P------- 239 (289)
T ss_dssp HHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTT----C-C-------
T ss_pred HHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcC----C-C-------
Confidence 9998 699999999999999999999999999987544332 235666666652 1 1
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHhccCCCCCCCCcHHHHhhhhhhhccccC
Q 007029 407 ANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYS 460 (621)
Q Consensus 407 ~~~~~~heAGyDA~mTG~vFikL~~~L~~~~~~~~s~~~~~~~~l~~~~N~l~~ 460 (621)
..+..|+||+||++||.+|.||.+.+-..+.... ..++|.|.||.
T Consensus 240 -r~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~--------~~~~~~g~l~G 284 (289)
T 1uoc_A 240 -RFSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGT--------DFAKYQGVIYG 284 (289)
T ss_dssp -CCGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSC--------BGGGGTTCSSC
T ss_pred -ccCcccccHHHHHHHHHHHHHHHHHHhhhhcCCC--------ChHHhCCEEeC
Confidence 1245799999999999999999997732211100 13588888885
No 7
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=99.46 E-value=4e-14 Score=122.05 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 474 RGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 474 ~~l~g~~~~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.||.|+|+.++|+||+++ +||++||+.||.+.++ .|+. ++|+|||||+|||+|++++.|..+|..++++.
T Consensus 4 ~~l~g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs----~fgg-v~I~WidDTsAlvvf~~~~~a~~al~~i~k~~ 73 (100)
T 1whv_A 4 GSSGGPDLQPKRDHVLHV-TFPKEWKTSDLYQLFS----AFGN-IQISWIDDTSAFVSLSQPEQVQIAVNTSKYAE 73 (100)
T ss_dssp SCCCCSCCCCCCCSEEEE-ECCTTCCHHHHHHHHT----TTCS-CCCEEEETTEEEEECSCHHHHHHHHHHHHHCC
T ss_pred cccCCCCCCCCCCeEEEE-eCChhhhhHHHHHHhh----ccCC-EEEEEEcCCeEEEEecCHHHHHHHHHhcccCC
Confidence 489999999999999997 9999999999765333 4442 79999999999999999999999999887654
No 8
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=99.23 E-value=5.9e-12 Score=108.90 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=53.0
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc--ccccchh
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA--VSGPLRE 556 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~--~~~~l~~ 556 (621)
.+|+||+++ +||++||+.||.+.+ ..||. ++|+|||||+|||+|++++.|..+|..++++. .+.++.+
T Consensus 3 ~~R~HV~~l-~FP~ewKt~Di~~lF----s~fgg-v~I~WidDTsAlvvf~~~~~a~~al~~i~~~~~y~i~ty~e 72 (101)
T 3ctr_A 3 LGSDHVLHV-TFPKEWKTSDLYQLF----SAFGN-IQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAE 72 (101)
T ss_dssp SEEEEEEEE-ECCTTCCHHHHHHHT----TTSEE-EEEEEEETTEEEEEEEEECHHHHHHHHHTTCSSCCCCCHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHH----hccCC-EEEEEEcCCeEEEEecCHHHHHHHHHhcccCCceEEEEhHH
Confidence 468888886 999999999976432 23442 69999999999999999999999999876554 3444433
No 9
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=98.79 E-value=8.9e-09 Score=87.06 Aligned_cols=73 Identities=14% Similarity=0.156 Sum_probs=53.3
Q ss_pred CcccHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhhcCCcceee
Q 007029 191 SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLI 270 (621)
Q Consensus 191 ~~~d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~~~~~~l~~~~ 270 (621)
+++++.|++.++++|.+|+++..+. .+++++||+|||+||||++++.||+.+.+.
T Consensus 6 p~e~k~~id~i~~kIe~FL~s~~~~-------------------------~l~l~pCN~f~RkLIYQ~~~~kfp~~i~ve 60 (87)
T 1ug8_A 6 SGDQKKFIDQVIEKIEDFLQSEEKR-------------------------SLELDPCTGFQRKLIYQTLSWKYPKGIHVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCC-------------------------EEECCCCCSHHHHHHHHHHHHHSSSSEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCC-------------------------ceecCCchHHHHHHHHHHHHHhcCCceEEE
Confidence 4567899999999999999975432 389999999999999999999999986432
Q ss_pred eccCCCCceeEEEEEccC
Q 007029 271 IPAKGGGTQAVRAVLTSS 288 (621)
Q Consensus 271 ~~~k~g~~~~~rvi~~~~ 288 (621)
.-.-.+....+.+...++
T Consensus 61 t~~~e~~~~~ivv~~~~~ 78 (87)
T 1ug8_A 61 TLETDKKERHIVISKVDE 78 (87)
T ss_dssp EECCSSSCSEEEEEECCT
T ss_pred EEecCCceEEEEEEecCH
Confidence 211122234455544444
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.52 E-value=0.01 Score=56.74 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=61.5
Q ss_pred cHHHHHHHHHh--CCCCEEeehhHHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHH
Q 007029 312 GFREVIDLISA--SQKPLVAHNSLNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 386 (621)
Q Consensus 312 GFr~Vi~~L~~--skKpIVGHN~llDL~~iy~~F~--g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~ 386 (621)
-|..|+..+.+ .+.++||||.=.|+-+|-+.|- | ++|. +. .+..++||-.++....|-. ..+|..
T Consensus 81 ~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~--------~~~~~iDt~~l~~~~~p~~-~~~L~~ 150 (194)
T 2gui_A 81 TFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN--------TFCKVTDSLAVARKMFPGK-RNSLDA 150 (194)
T ss_dssp CHHHHHHHHHHHHTTSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG--------GTSEEEEHHHHHHHHSTTS-CCSHHH
T ss_pred CHHHHHHHHHHHHCCCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc--------ccCceeeHHHHHHHHcCCC-CCCHHH
Confidence 34444444332 4679999999999998887652 2 3331 10 0235889977776654422 236777
Q ss_pred HHHHHHhcCCCCceeecCCCCCCC-CcccchhhHHHHHHHHHHHHH
Q 007029 387 TIAYLKNRFFAPIEMEIPNQANEN-EGKIHGHNVVKICQLFGKLCS 431 (621)
Q Consensus 387 ~~~~l~~~~~~~~~vei~~~~~~~-~~heAGyDA~mTG~vFikL~~ 431 (621)
+.+.+. + +. .+ ..|.|-.||..|+.||.+|..
T Consensus 151 l~~~~g--------i--~~---~~~~~H~Al~Da~~ta~l~~~l~~ 183 (194)
T 2gui_A 151 LCARYE--------I--DN---SKRTLHGALLDAQILAEVYLAMTG 183 (194)
T ss_dssp HHHHTT--------C--CC---TTCSSCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHcC--------c--CC---CCCCCCChHHHHHHHHHHHHHHHh
Confidence 666541 1 11 12 479999999999999988864
No 11
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=96.44 E-value=0.0087 Score=57.30 Aligned_cols=87 Identities=13% Similarity=0.028 Sum_probs=54.7
Q ss_pred CCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHh--h--hCcccccCchHHHHHHHHhcCCCC
Q 007029 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLK--D--IGPVKKMTNISATIAYLKNRFFAP 398 (621)
Q Consensus 323 skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~--~--~~~~~~~~~L~~~~~~l~~~~~~~ 398 (621)
.+.++||||.-.|+-+|-.. +|. ..++||..+.. . .-|-.+..+|..+.+.+-.
T Consensus 82 ~~~~lV~hn~~fD~~~L~~~----~~~-------------~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lg----- 139 (189)
T 1wlj_A 82 KGKLVVGHDLKHDFQALKED----MSG-------------YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLH----- 139 (189)
T ss_dssp TTSEEEESSHHHHHHHTTCC----CTT-------------CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTC-----
T ss_pred CCCEEEECCcHHHHHHHHHh----CCC-------------CceechHhhhhhhhcccCCCCCCccHHHHHHHHcC-----
Confidence 37899999999999877543 221 14889976532 1 1121245567777775211
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhccC
Q 007029 399 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKIT 436 (621)
Q Consensus 399 ~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L~~~ 436 (621)
+ +.+. .+..|.|-.||.+|+.+|.++...+...
T Consensus 140 --i--~~~~-~~~~H~Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 140 --K--SIQN-SLLGHSSVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp --C--CCSC-CTTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --C--CCCC-CCCCcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111 1237999999999999999999877543
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=96.09 E-value=0.026 Score=53.70 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=60.3
Q ss_pred cHHHHHHHHHh--CCCCEEeehhHHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHH
Q 007029 312 GFREVIDLISA--SQKPLVAHNSLNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISA 386 (621)
Q Consensus 312 GFr~Vi~~L~~--skKpIVGHN~llDL~~iy~~F~--g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~ 386 (621)
-|..|++.+.+ .+.+|||||.=.|+-+|-..|- | +.| -..++||..++..... .+..+|..
T Consensus 78 ~~~~v~~~~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~-------------~~~~iDt~~l~~~~~~-~~~~~L~~ 143 (186)
T 2p1j_A 78 SIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDW-------------ERPYIDTLALAKSLLK-LRSYSLDS 143 (186)
T ss_dssp BHHHHHHHHHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCC-------------CCCEEEHHHHHHHHTC-CSCCSHHH
T ss_pred CHHHHHHHHHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCC-------------CCCEEeHHHHHHHHhh-cCCCCHHH
Confidence 34444444332 3679999999999999876552 2 222 1347899887766542 13446777
Q ss_pred HHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 007029 387 TIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 432 (621)
Q Consensus 387 ~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~ 432 (621)
+.+.+. + +. ...|.|..||..|+.+|.+|...
T Consensus 144 l~~~~g--------i--~~----~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 144 VVEKLG--------L--GP----FRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp HHHHTT--------C--CS----TTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcC--------C--CC----CCCcCHHHHHHHHHHHHHHHHHH
Confidence 666541 1 11 13699999999999999988654
No 13
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=95.94 E-value=0.013 Score=56.39 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=56.9
Q ss_pred CCEEeehhHHHHH-HHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcc-cccCchHHHHHHHHhcCCCCc
Q 007029 325 KPLVAHNSLNDFT-FIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV-KKMTNISATIAYLKNRFFAPI 399 (621)
Q Consensus 325 KpIVGHN~llDL~-~iy~~F~--g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~-~~~~~L~~~~~~l~~~~~~~~ 399 (621)
.++||||.=.|+- +|-..|- | ++|. .+..++||+.++...-+. ....+|..+.+.+.
T Consensus 106 ~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-----------~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~g------- 167 (204)
T 1w0h_A 106 KYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG------- 167 (204)
T ss_dssp CEEEEESSTTTTHHHHHHHHHHHTCCCCG-----------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT-------
T ss_pred cEEEEEECcchHHHHHHHHHHHhCCCCcc-----------cccceEEHHHHHHHHhCCCCccchHHHHHHHcC-------
Confidence 4599999999995 8765542 2 3332 123689999888765332 12346777776551
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 400 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 400 ~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
+ + ..+..|.|-.||..|+.||.+|....
T Consensus 168 -i--~---~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 168 -M--D---YDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp -C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -C--C---CCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 1 1 11246999999999999999998753
No 14
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=95.77 E-value=0.025 Score=58.28 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCEEeehhHHHHH-HHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCccc-ccCchHHHHHHHHhcCCCCc
Q 007029 325 KPLVAHNSLNDFT-FIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVK-KMTNISATIAYLKNRFFAPI 399 (621)
Q Consensus 325 KpIVGHN~llDL~-~iy~~F--~g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~-~~~~L~~~~~~l~~~~~~~~ 399 (621)
+++||||.=.|+- +|-..| +| ++|. ++..++||+.+.....+.+ ...+|..+.+.+.
T Consensus 174 ~~lVahn~~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~g------- 235 (299)
T 1zbh_A 174 KYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLG------- 235 (299)
T ss_dssp CEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTT-------
T ss_pred cEEEEEeCHHHHHHHHHHHHHHcCCCCCc-----------ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcC-------
Confidence 7999999999999 887665 22 4442 1235889988776542222 1356777776541
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 400 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 400 ~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
+ + ..+..|.|-.||..|+.||.+|....
T Consensus 236 -i--~---~~g~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 236 -M--D---YDGRPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp -C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -C--C---CCCCCCChHHHHHHHHHHHHHHHHhC
Confidence 1 1 11246999999999999999998765
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=95.55 E-value=0.013 Score=58.66 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCEEeehh-HHHHHHHHHhc--cC-CCCCCHHHHHHHHHccCC-CccchhhHHhhhC--------cccccCchHHHHHHH
Q 007029 325 KPLVAHNS-LNDFTFIHSKF--LA-PLPPNMNEFICSLRLAFP-QVIDVNYLLKDIG--------PVKKMTNISATIAYL 391 (621)
Q Consensus 325 KpIVGHN~-llDL~~iy~~F--~g-pLP~t~~eFk~~i~~lFP-~I~DTKyLa~~~~--------~~~~~~~L~~~~~~l 391 (621)
.++||||. -+|+-+|.+.| +| ++| .-+ .++||-.++..+. |-.+.-+|..+.+.+
T Consensus 119 ~~lVaHNav~FD~~fL~~~~~r~g~~~~------------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~ 186 (242)
T 3mxm_B 119 CCLVAHNGDRYDFPLLQTELARLSTPSP------------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (242)
T ss_dssp EEEEETTTTTTHHHHHHHHHHTSSSCCT------------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHH
T ss_pred CEEEEcCChHhhHHHHHHHHHHcCCCCC------------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHH
Confidence 57999996 89999998776 33 222 011 3678877666432 112345788877652
Q ss_pred HhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 392 KNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 392 ~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
-. + +. ...|.|-.||.+|+.||.+++..+
T Consensus 187 ~g-------i--~~----~~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 187 YW-------Q--AP----TDSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HS-------S--CC----SSTTSHHHHHHHHHHHHTSSHHHH
T ss_pred hC-------C--CC----CCCcChHHHHHHHHHHHHHHHHHH
Confidence 11 1 11 136999999999999999887754
No 16
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=95.14 E-value=0.055 Score=53.32 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=59.3
Q ss_pred CCCCEEeehhHHHHHHHHHhc--cCCCCCCHHHHHHHHHccCC--CccchhhHHhhhCcccccCchHHHHHHHHhcCCCC
Q 007029 323 SQKPLVAHNSLNDFTFIHSKF--LAPLPPNMNEFICSLRLAFP--QVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 398 (621)
Q Consensus 323 skKpIVGHN~llDL~~iy~~F--~gpLP~t~~eFk~~i~~lFP--~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~ 398 (621)
.+.++||||.=.|+-++...| +| ++. .-|+ .++||..++....| ..+|..+.+.+.
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g-~~~----------~p~~~~~~~Dt~~la~~~~p---~~~L~~l~~~~g------ 192 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERAS-LKR----------NPFHPFATFDTAALAGLALG---QTVLSKACQTAG------ 192 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTT-CCC----------CCEEEEEEEEHHHHHHHHHS---CCSHHHHHHHHT------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcC-CCC----------CCCCCCcEEEhHHHHHHHhC---CCCHHHHHHHcC------
Confidence 467999999999999987654 12 210 0021 47899888876543 236777766652
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhcc
Q 007029 399 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKI 435 (621)
Q Consensus 399 ~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L~~ 435 (621)
+ +.. ....|.|..||.+|+.+|.+|...+..
T Consensus 193 --i--~~~--~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 193 --M--DFD--STQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp --C--CCC--TTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C--CCC--CCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 1 110 124799999999999999999998743
No 17
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=94.95 E-value=0.063 Score=52.50 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=57.3
Q ss_pred CCCCEEeehhHHHHHHHHHhcc--CCCCCCHHHHHHHHHccC-C-CccchhhHHhhhCcccccCchHHHHHHHHhcCCCC
Q 007029 323 SQKPLVAHNSLNDFTFIHSKFL--APLPPNMNEFICSLRLAF-P-QVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAP 398 (621)
Q Consensus 323 skKpIVGHN~llDL~~iy~~F~--gpLP~t~~eFk~~i~~lF-P-~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~ 398 (621)
.+.++||||.=.|+-+|-+.|- | ++. .-| + .++||..++....| ..+|..+.+.+.
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g-~~~----------~p~~~~~~iDt~~l~~~~~~---~~~L~~l~~~~g------ 184 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTG-IKR----------NPFHPFSSFDTATLAGLAYG---QTVLAKACQAAG------ 184 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHT-CCC----------CCEEEEEEEEHHHHHHHHHS---CCSHHHHHHHTT------
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcC-CCc----------CCccccceeeHHHHHHHHcC---CCCHHHHHHHcC------
Confidence 4678999999999998886552 2 110 002 1 48899888776433 235666665541
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHhc
Q 007029 399 IEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILK 434 (621)
Q Consensus 399 ~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L~ 434 (621)
++ . .....|.|..||..|+.+|.+|...+.
T Consensus 185 --i~--~--~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 185 --ME--F--DNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp --CC--C--CTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CC--c--CCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11 0 012479999999999999999988763
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=94.59 E-value=0.054 Score=56.36 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=57.7
Q ss_pred HHHHHHHhC--CCCEEeeh-hHHHHHHHHHhc--cC-CCCCCHHHHHHHHHccCC-CccchhhHHhhh----Ccc----c
Q 007029 315 EVIDLISAS--QKPLVAHN-SLNDFTFIHSKF--LA-PLPPNMNEFICSLRLAFP-QVIDVNYLLKDI----GPV----K 379 (621)
Q Consensus 315 ~Vi~~L~~s--kKpIVGHN-~llDL~~iy~~F--~g-pLP~t~~eFk~~i~~lFP-~I~DTKyLa~~~----~~~----~ 379 (621)
.+.+.|... ..++|||| .-+|+-||-+.| +| ++|. .+ ..+||--++..+ .|- .
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~------------~~~~~iDTL~l~r~L~r~~~P~~~~~~ 174 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL------------DGTFCVDSIAALKALEQASSPSGNGSR 174 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT------------TTCEEEEHHHHHHHHHTTC-------C
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC------------CCceEEeHHHHHHHHHHHhCccccccC
Confidence 344444442 36899999 789999998776 23 2220 01 256775544322 111 1
Q ss_pred ccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 380 KMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 380 ~~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
+.-+|+.+.+.+-. + + ....|.|-.||.+|+.||.+++..+
T Consensus 175 ~~~~L~~L~~~l~g-------i--~----~~~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 175 KSYSLGSIYTRLYW-------Q--A----PTDSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp CCCSHHHHHHHHHS-------S--C----CSCSSSHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCHHHHHHHhcC-------C--C----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34578888876311 1 1 1237999999999999999988755
No 19
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=94.31 E-value=0.09 Score=55.46 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=69.4
Q ss_pred HhhhhhcccHHHHHHHH----HhC-----CCCEEeehhHHHHH-HHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhh
Q 007029 304 FEQNKRVRGFREVIDLI----SAS-----QKPLVAHNSLNDFT-FIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNY 370 (621)
Q Consensus 304 ~e~~~~~~GFr~Vi~~L----~~s-----kKpIVGHN~llDL~-~iy~~F--~g-pLP~t~~eFk~~i~~lFP~I~DTKy 370 (621)
++.+..+.-|..|++.+ .+. ++++||||.=.|+- +|-..| +| ++|. ++-.++||+.
T Consensus 194 ~e~v~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~ 262 (349)
T 1zbu_A 194 QDQVDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-----------FAKKWINIRK 262 (349)
T ss_dssp HHHHHTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-----------GGSEEEEHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-----------ccchHHHHHH
Confidence 44556666777776654 333 16999999999999 887655 22 3442 1224789988
Q ss_pred HHhhhCcccc-cCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 371 LLKDIGPVKK-MTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 371 La~~~~~~~~-~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
++....+.+. ..+|..+.+.+. + + ..+..|.|-.||..|+.||.+|....
T Consensus 263 l~~~~~~~~~~~~~L~~l~~~~g--------i--~---~~g~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 263 SYGNFYKVPRSQTKLTIMLEKLG--------M--D---YDGRPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp HHHHHHTCCGGGGSHHHHHHHTT--------C--C---CCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCCCCCHHHHHHHcC--------C--C---CCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7765422221 246777776551 1 1 11246999999999999999998765
No 20
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=94.01 E-value=0.11 Score=50.85 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=50.3
Q ss_pred CCCEEeehh--------HHHHHHHH-Hhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHH
Q 007029 324 QKPLVAHNS--------LNDFTFIH-SKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYL 391 (621)
Q Consensus 324 kKpIVGHN~--------llDL~~iy-~~F--~g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l 391 (621)
+.++||||. =.|+-++. ..+ .| ++|. .|-..+|++..........+..+|..+.+.+
T Consensus 117 ~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~-----------~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~ 185 (224)
T 2xri_A 117 KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVAD-----------YFKQWINLKKAYSFAMGCWPKNGLLDMNKGL 185 (224)
T ss_dssp HTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCG-----------GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHT
T ss_pred hcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcc-----------cccceEeHHHHHHHHhccCCCCCHHHHHHHc
Confidence 458999999 89998744 222 22 3332 1235778543222111111124566666644
Q ss_pred HhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 007029 392 KNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 432 (621)
Q Consensus 392 ~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~ 432 (621)
. + +. .+..|.|-.||..|+.||.+|...
T Consensus 186 g--------i--~~---~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 186 S--------L--QH---IGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp T--------C--CC---CSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred C--------C--CC---CCCCcChHHHHHHHHHHHHHHHHc
Confidence 1 1 11 135799999999999999999863
No 21
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=93.57 E-value=0.14 Score=50.35 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCCEEeehh-HHHHHHHHHhcc--C-CCCCCHHHHHHHHHccCCCccchhhHHhhhC---------cccccCchHHHHHH
Q 007029 324 QKPLVAHNS-LNDFTFIHSKFL--A-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIG---------PVKKMTNISATIAY 390 (621)
Q Consensus 324 kKpIVGHN~-llDL~~iy~~F~--g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~---------~~~~~~~L~~~~~~ 390 (621)
+.++||||. =.|+-+|-+.|- | ++|.. -.++||-.++.... |-.+..+|..+.+.
T Consensus 113 ~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~ 180 (238)
T 1y97_A 113 PICLVAHNGFDYDFPLLCAELRRLGARLPRD------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 180 (238)
T ss_dssp SEEEEETTTTTTHHHHHHHHHHHHTCCCCTT------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHH
T ss_pred CCEEEecCchhhhHHHHHHHHHHcCCCCCCC------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHH
Confidence 378999999 899999886652 2 22210 13789977766543 22234577777773
Q ss_pred -HHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 391 -LKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 391 -l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
+. + + ....|.|-.||.+|+.+|.+|...+
T Consensus 181 ~~g--------i--~----~~~~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 181 YFR--------A--E----PSAAHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HHS--------S--C----CC---CHHHHHHHHHHHHHHTHHHH
T ss_pred HhC--------C--C----CccCccHHHHHHHHHHHHHHHHHHH
Confidence 42 1 1 1236999999999999999987644
No 22
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=92.53 E-value=0.085 Score=54.57 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=58.8
Q ss_pred ccHHHHHHHHHh--CCCCEEeehh------HHHH-HHHHHhc--cC-CCCCCHHHHHHHHHccCCCccchhhHHhhhCcc
Q 007029 311 RGFREVIDLISA--SQKPLVAHNS------LNDF-TFIHSKF--LA-PLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV 378 (621)
Q Consensus 311 ~GFr~Vi~~L~~--skKpIVGHN~------llDL-~~iy~~F--~g-pLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~ 378 (621)
.-|..|++.+.+ .+.++||||. =.|+ .+|-+.| +| ++|. .|...+||+.++...-+.
T Consensus 93 p~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~-----------~~~~~iDt~~l~~~~~~~ 161 (308)
T 3cg7_A 93 DTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPA-----------FFRQYINLYKIFTNEMDR 161 (308)
T ss_dssp CBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCG-----------GGSEEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCch-----------hhcceeeHHHHHHHHhcc
Confidence 344555444322 2345789998 6899 5776544 22 3332 223578998877654322
Q ss_pred cc------cCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 007029 379 KK------MTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 432 (621)
Q Consensus 379 ~~------~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~ 432 (621)
.. ..+|..+.+.+. + + ..+..|.|-.||..|+.+|.+|...
T Consensus 162 ~~~~~~~~~~~L~~l~~~~g--------i--~---~~~~~HrAl~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 162 MGPKELSATTNIGKMNEYYD--------L--P---TIGRAHDAMDDCLNIATILQRMINM 208 (308)
T ss_dssp HCCCCCCCCSHHHHHHHHTT--------C--C---CCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccCcCHHHHHHHcC--------C--C---CCCCCcCHHHHHHHHHHHHHHHHHc
Confidence 11 345777766551 1 1 1123599999999999999998764
No 23
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=91.98 E-value=0.68 Score=43.27 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=46.6
Q ss_pred CCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCC-Cccchhh---HHhhhCcccccCchHHHHHHHHhcCCCCc
Q 007029 324 QKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVIDVNY---LLKDIGPVKKMTNISATIAYLKNRFFAPI 399 (621)
Q Consensus 324 kKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP-~I~DTKy---La~~~~~~~~~~~L~~~~~~l~~~~~~~~ 399 (621)
+.++||||.=.|+-+|...|- .+ ...|+ .++|+.. |+....| . + ..
T Consensus 100 ~~~lv~hn~~fD~~fL~~~~~--------~~----~~~~~~~~~d~~tl~~l~~~~~p--~---~-------~~------ 149 (180)
T 2igi_A 100 KSPICGNSIGQDRRFLFKYMP--------EL----EAYFHYRYLDVSTLKELARRWKP--E---I-------LD------ 149 (180)
T ss_dssp TSCEEESSHHHHHHHHHHHCH--------HH----HHHSCSCEEETHHHHHHHHHHCG--G---G-------GG------
T ss_pred CceEEecCHHHHHHHHHHHHH--------Hh----ccCCCcceeeHHHHHHHHHHhCh--H---h-------hh------
Confidence 369999999999999987652 11 12233 3788332 3433322 0 0 00
Q ss_pred eeecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 400 EMEIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 400 ~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
.++ ....|.|-.||.+|+.+|.++...+
T Consensus 150 --~i~----~~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 --GFT----KQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp --GSC----CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --CCC----CcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 011 1347999999999999999887755
No 24
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.70 E-value=0.27 Score=42.32 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=50.9
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccc-eEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA-FNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~-~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
+....+|+-.-|..++..+|++.|. ++|+++ +.|.-|-...|||.|.+.+.|...++.++...
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~---~lF~~yGG~Vl~VtgG~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLR---RLSDNCGGKVLSITGCSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHH---HHHHTTTCCEEECCTTCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHH---HHHHHcCCeeEEEecCEEEEEECCHHHHHHHHHHhcCCc
Confidence 3455588889999999999998776 477777 36666666889999999999999998887765
No 25
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=90.30 E-value=1.5 Score=41.60 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=46.2
Q ss_pred CCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHH---hhhCcccccCchHHHHHHHHhcCCCCcee
Q 007029 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLL---KDIGPVKKMTNISATIAYLKNRFFAPIEM 401 (621)
Q Consensus 325 KpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa---~~~~~~~~~~~L~~~~~~l~~~~~~~~~v 401 (621)
.|+||||.-.|+-||-+.|- .+. ..+..+.+||..|. ....| + +.. .+
T Consensus 105 ~~lvghn~~FD~~fL~~~~~--------~~~---~~~~~~~~d~~~l~~l~~~~~p--~----------~~~------~i 155 (194)
T 2gbz_A 105 SPMCGNSICQDRRFLHRQMS--------RLE---RYFHYRNLDVSTIKELARRWAP--A----------VAS------GF 155 (194)
T ss_dssp SCEEESSHHHHHHHHHHHCH--------HHH---HHSCSCEEEHHHHHHHHHHHCG--G----------GGT------TC
T ss_pred ceEEecCHHHhHHHHHHHHH--------Hhc---ccCCCccccHHHHHHHHHHhCH--H----------HHh------CC
Confidence 35999999999999987651 111 12233477886432 21111 0 110 01
Q ss_pred ecCCCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 402 EIPNQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 402 ei~~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
.....|.|-.||..|+.+|..+...+
T Consensus 156 ------~~~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 156 ------AKSSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp ------CCCSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred ------CCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 11346999999999999998888765
No 26
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.41 E-value=0.65 Score=38.04 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+.....||+-+.|..++..+|++.+++ ||+..+|..+.+ .+||.|.+.+.|...+..++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~v~~~~~~~~-~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFER----RGRVIECDVVKD-YAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHH----HSCEEEEEECSS-CEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc----CCCEEEEEEECC-EEEEEECCHHHHHHHHHHhCCC
Confidence 344567788899999998888776553 444346666644 9999999999999888876553
No 27
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.35 E-value=0.89 Score=38.75 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=48.3
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.....-|||-+.|..++..+|++.++ -|++..+|..+-+..|||.|.+.+.|...+..++...
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 74 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMR----EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 74 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHG----GGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCC
Confidence 34567888899999999888776554 3444457777777899999999999998888776543
No 28
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=88.81 E-value=0.4 Score=47.05 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecC--CCceeeEeEEEee
Q 007029 40 SLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQ--ASKVIAYPYNFHL 117 (621)
Q Consensus 40 ~lp~i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~--~~~y~~~~fNF~l 117 (621)
.+..+.+.+++..||+||+|.||+.+. .-.|+|+|+..+..+ +.-.....|+.++
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~-----------------------~~~IieIgav~~~~~~~g~i~~~~~f~~~v 82 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK-----------------------TDALLEIAAITLKMDEQGWLMPDTTLHFHV 82 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT-----------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEEB
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC-----------------------CCeEEEEEEEEEEEcCCCcccccceEEEEE
Confidence 445566788999999999999999321 235999999988753 3223578899998
Q ss_pred cCc
Q 007029 118 FPR 120 (621)
Q Consensus 118 fp~ 120 (621)
-|.
T Consensus 83 ~P~ 85 (235)
T 3v9w_A 83 EPF 85 (235)
T ss_dssp CCC
T ss_pred CCC
Confidence 884
No 29
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=87.77 E-value=0.53 Score=45.79 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHhhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecC-CCc-eeeEeEEEeecCc
Q 007029 44 IKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQ-ASK-VIAYPYNFHLFPR 120 (621)
Q Consensus 44 i~~~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~-~~~-y~~~~fNF~lfp~ 120 (621)
+.+.+.+..||+||+|.||+.+. .-.|+|+|+..+..+ ++. .....|+.++-|.
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~-----------------------~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~ 77 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA-----------------------TDALLEIAATTVGMDEKGFLFPEHTYFFRIEPF 77 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT-----------------------TBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCC
T ss_pred hhccccCCcEEEEEeeCCCCCCC-----------------------CCeeEEEEEEEEEEcCCCcccccceEEEEECCC
Confidence 46678888999999999998321 235999999998853 233 3578899999884
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.96 E-value=1.2 Score=37.14 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
......|||-+.|..++..+|++.+++ |++...|..+-+. .|||.|.+.+.|...+..++..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSK----YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHH----HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh----cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 345678888999999998888876654 4443467776542 7999999999999888776654
No 31
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.44 E-value=1.1 Score=37.10 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=46.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+|+-+.|..++..+|++.|..++.-||+..+|.... ...|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 467888899999999999977666555555533555442 347999999999999888877654
No 32
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.31 E-value=1 Score=37.58 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=43.5
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+.....|||-+.|..++..+|++ +|+.++.|..+-+. .|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~-------~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKE-------SFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHH-------TSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCccCHHHHHH-------HhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 33456677789999998888665 45555566666442 6999999999999888877654
No 33
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.80 E-value=1.5 Score=36.50 Aligned_cols=63 Identities=16% Similarity=0.072 Sum_probs=47.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+||-+.|..++..+|++.|..++.-||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC
Confidence 456888899999999999866666555666545666663 346999999999999888877654
No 34
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.02 E-value=1.1 Score=37.29 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCCCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 479 DKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 479 ~~~~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..+.......|||-+.|..++..+|++ +|++++.|..+.+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~-------~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQE-------VFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHH-------HCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHH-------HHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 333444567888899999999888665 4555556655544 36999999999999888766553
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.73 E-value=1.7 Score=36.38 Aligned_cols=63 Identities=8% Similarity=0.097 Sum_probs=44.9
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.......|||-+.|..++..+|++.++ -|++...|..+-+. .|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFR----PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTST----TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 344567788899999998888765443 34443466666542 6999999999999888766543
No 36
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.50 E-value=1.9 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=44.7
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc----------eEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS----------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t----------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+.|||-+.|..++..+|+. +..++.-||+-.+|...-+. .|||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~-~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLK-RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHH-STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHH-HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 3467888899999988888762 12233344443466665442 7999999999999888877654
No 37
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.34 E-value=2.2 Score=34.92 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+.....||+-+.|..++..+|++.+++ |++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSK----YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHT----TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh----cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3445677888999999998888776553 444346665532 26999999999999888776543
No 38
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.25 E-value=2 Score=35.13 Aligned_cols=60 Identities=7% Similarity=0.091 Sum_probs=45.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....+||-+.|..++..+|++.++ -||+..+|..+-+ .|||.|.+.+.|...+..++..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~----~~G~v~~v~~~~~-~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFE----EYGPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHH----TTSCCCEEEECSS-EEEEEESCHHHHHHHHHHHTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEECC-EEEEEECCHHHHHHHHHHhCCC
Confidence 3456788889999999888877555 3454346666644 9999999999999888777654
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=84.17 E-value=2.4 Score=36.16 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=45.6
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
......|||-+.|..++..+|++.++ -||...+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFA----PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34566788899999999888877655 3444346666654 26999999999999888766543
No 40
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.13 E-value=3.6 Score=34.29 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=45.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFE----KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 3457888899999999888776554 3444346666533 369999999999998888776543
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.08 E-value=3.1 Score=34.69 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=45.4
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
......|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFG----QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGG----GTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34567888899999999888776554 3444346666644 36999999999999888766543
No 42
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.91 E-value=1.8 Score=36.28 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.......|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFL----QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 334567888899999999888776555 34443466666553 7999999999998887766543
No 43
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.73 E-value=2.2 Score=38.00 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...+||-+.|..++..+|+..|..++.-||+-.+|.... ...|||.|.+.+.|...+..++...
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 457888889999998999888776666666544554322 2369999999999998888776543
No 44
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=83.38 E-value=1.3 Score=41.66 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=31.9
Q ss_pred hhcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 47 HISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 47 ~I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
.+.+..||+||+|.||+.+. .=.|+|+|...+. ++. ....|+.++-|.
T Consensus 8 ~l~~~~~v~iD~ETTGl~~~-----------------------~~~IieIg~v~~~--~g~-i~~~f~~lv~P~ 55 (186)
T 2p1j_A 8 TFGDATFVVLDFETTGLDPQ-----------------------VDEIIEIGAVKIQ--GGQ-IVDEYHTLIKPS 55 (186)
T ss_dssp -----CEEEEEEEESCSCTT-----------------------TCCEEEEEEEEEE--TTE-EEEEEEEECBCS
T ss_pred cCcCCCEEEEEEECCCCCCC-----------------------CCeEEEEEEEEEE--CCE-EEEEEEEEECcC
Confidence 35678999999999998321 1149999998876 222 346788888885
No 45
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=82.90 E-value=1.9 Score=37.30 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=46.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...-|||-+.|..++..+|++.++ -|++..+|..+-+..|||.|.+.+.|...+..++...
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~ 75 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR----EAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 75 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG----GGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 457788889999999888776544 4444357777777899999999999998888776644
No 46
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=82.39 E-value=1.5 Score=40.95 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 50 SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 50 ~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
+..||+||+|.||+.+. .-.|+|+|...++.++ .-....|+.++-|.
T Consensus 4 ~~~~v~iD~ETTGl~~~-----------------------~~~IieIg~v~~~~~~-~~~~~~~~~lv~P~ 50 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE-----------------------RDRIIEIATLVTDANL-NILAEGPTIAVHQS 50 (180)
T ss_dssp GGCEEEEEEEESSSCTT-----------------------TCCEEEEEEEEECTTC-CEEEEEEEEECCCC
T ss_pred CCcEEEEEeeCCCCCCC-----------------------CCceEEEEEEEEcCCC-cEecCCcceEECCC
Confidence 34799999999998321 1259999998665332 23344589998885
No 47
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=82.17 E-value=2 Score=35.98 Aligned_cols=61 Identities=10% Similarity=0.273 Sum_probs=45.6
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....|||-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEE----FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHH----HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34567888899999998888876654 444346666653 36999999999999888877654
No 48
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.57 E-value=4 Score=34.86 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=43.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..+||+-+.|..++-.+|++.++ -||+..+|..+. ...|||.|.+.+.|...+..++..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~----~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALE----KFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHT----TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccC
Confidence 46899899999988888765443 444434665553 467999999999999888876543
No 49
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.48 E-value=2.7 Score=33.57 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=42.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~ 545 (621)
....+|+-+.|..++..+|++.++ -||+-.+|..+- ...|||.|.+.+.|...+..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~----~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFY----QFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHH----TTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHH----hCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 456778889999999888876554 344434565554 457999999999998877755
No 50
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.32 E-value=3.5 Score=33.64 Aligned_cols=60 Identities=12% Similarity=0.247 Sum_probs=44.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFE----PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 356788889999999888776554 34443466666542 7999999999999888877654
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.24 E-value=3 Score=34.04 Aligned_cols=61 Identities=11% Similarity=0.271 Sum_probs=44.1
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFS----KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTT----TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 3456788899999999888776554 3444346666543 26999999999999888766543
No 52
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.23 E-value=3.2 Score=34.61 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=44.8
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....|||-+.|..++..+|++.+++ .|+...+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~---~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVK---VYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHH---HCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHH---hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCC
Confidence 34567888899999998888776553 1554446666543 36999999999999888766543
No 53
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=81.08 E-value=2.9 Score=35.01 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.+++ |++..+|..+ ...|||.|.+.+.|...+..++..
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~----~G~i~~v~~~-~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQ----FGKLERVKKL-KDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHH----HSCEEEEEEC-SSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEE-CCEEEEEeCCHHHHHHHHHHHCCC
Confidence 467888899999998888775553 4443455554 558999999999999888877654
No 54
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=80.98 E-value=3.1 Score=33.34 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...||+-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAP----FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGG----GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh----cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 456788899999998888776553 444346666654 26999999999999888766543
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=80.90 E-value=4.9 Score=33.48 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
....|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+.+++...
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQ----PFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 356788889999999888776554 3444346666654 469999999999998888776543
No 56
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.34 E-value=3.7 Score=33.34 Aligned_cols=58 Identities=3% Similarity=0.163 Sum_probs=43.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+|+-+.|..++..+|++.++ -|++..+|... ...|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~~~-~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFE----QYGKVLECDII-KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHH----TSSCEEEEEEE-TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEE-CCEEEEEECCHHHHHHHHHHhcCC
Confidence 45677789999999888776554 34443466555 778999999999999888766543
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.91 E-value=3.9 Score=34.04 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=43.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFS----PFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTT----TTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 456678889999999888776544 3444346666644 36999999999999888876654
No 58
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=79.74 E-value=4 Score=33.10 Aligned_cols=60 Identities=15% Similarity=0.267 Sum_probs=43.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++ ||+..+|....+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~----~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE----CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT----TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3567888899999998888876553 444345555543 36999999999999888776554
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=79.50 E-value=5.4 Score=32.49 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=44.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....||+-+.|..++..+|++.++ -||+..+|...-+ ..|||.|.+.+.|...+..++..
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 456788889999999888776554 3444346666544 36999999999999888776654
No 60
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.44 E-value=3.2 Score=34.22 Aligned_cols=59 Identities=10% Similarity=0.262 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccce-EEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+|+-+.|..++..+|++.+++ |++.. +|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFAT----MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHH----TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH----hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 466788889999998888876654 45444 6666644 26999999999999887766543
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.33 E-value=4.9 Score=33.40 Aligned_cols=60 Identities=8% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFS----QIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHH----HHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH----hcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 457788899999999888877655 3444346666653 47999999999999888877654
No 62
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=79.30 E-value=9.9 Score=32.00 Aligned_cols=58 Identities=9% Similarity=0.174 Sum_probs=43.5
Q ss_pred CCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+||-+.|.. ++..+|++.++ -||+..+|.. ....|||.|.+.+.|...+..++..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFS----KYGRVAGCSV-HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHG----GGSCCSEEEE-ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH----hCCCeEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 467888889998 89888776554 3444335544 6778999999999999888777654
No 63
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=78.66 E-value=3.3 Score=36.65 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=45.2
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHT----TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 33456778899999999888776554 3444346766633 26999999999999888876553
No 64
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.46 E-value=4.8 Score=33.28 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 356688889999999888776554 3444345665543 36999999999999888766553
No 65
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=78.28 E-value=4.3 Score=34.58 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=43.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFM----PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHG----GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 345778889999999888776555 34443466665443 6999999999999888776553
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=78.25 E-value=4.7 Score=34.46 Aligned_cols=60 Identities=13% Similarity=0.239 Sum_probs=43.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.+...+..++.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFL----PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTT----TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC
Confidence 3456788899999999888776544 3444346666533 2699999999999988776644
No 67
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.08 E-value=5.3 Score=33.02 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=44.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+||-+.|..++..+|++.+++ |++..+|...- ...|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEK----YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTST----TCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh----cCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998887765543 44434565554 457999999999999888777654
No 68
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.02 E-value=5.7 Score=33.74 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=42.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
..++|+-+.|..++-.+|++.+ .-||...+|..+. ...|||.|.+.+.|...+..++.
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F----~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALG----LPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTT----TTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHH----HhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhcc
Confidence 4688888999988888876533 3444434666554 45799999999999988776653
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.69 E-value=5.3 Score=33.80 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=43.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFS----MAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 356788889999999888776554 3444345665543 36999999999999888776654
No 70
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.60 E-value=4.2 Score=34.50 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=46.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++++.+-.....+.+.... .|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 356888899999999999887766555442222456665433 6999999999999888776554
No 71
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=77.54 E-value=6.4 Score=31.50 Aligned_cols=55 Identities=15% Similarity=0.204 Sum_probs=40.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 543 (621)
....||+-+.|..++..+|++.++ -||+-..|.++-+ ..+||.|.+.+.|...+.
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFT----KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 456788899999999888776554 3444346666533 269999999998887664
No 72
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=77.30 E-value=2.9 Score=45.82 Aligned_cols=96 Identities=8% Similarity=-0.010 Sum_probs=53.9
Q ss_pred HHHHHHHhCCCCEEeeh-hHHHHHHHHHhcc----CCCCCCHHHHHHHHHccCCCccchhhHHhhhCcc-----------
Q 007029 315 EVIDLISASQKPLVAHN-SLNDFTFIHSKFL----APLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPV----------- 378 (621)
Q Consensus 315 ~Vi~~L~~skKpIVGHN-~llDL~~iy~~F~----gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~----------- 378 (621)
.+.+.|.+.+.++|||| .=.|+-++-..|. .|+|..+. . .-..+||--++....++
T Consensus 87 ~f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~-------~-~~~~iDtl~l~r~~~~~~~~~~~wP~~~ 158 (482)
T 2qxf_A 87 RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ-------H-DNSRWDLLDVMRACYALRPEGINWPEND 158 (482)
T ss_dssp HHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTG-------G-GCEEEEHHHHHHHHHHHCCTTSCCCBCT
T ss_pred HHHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccc-------c-CCceeeHHHHHHHHHHhCcccccCcccc
Confidence 34444443578999999 6899988766553 23331110 0 02256876555432211
Q ss_pred --cccCchHHHHHHHHhcCCCCceeecCCCCCCCCcccchhhHHHHHHHHHHHHHH
Q 007029 379 --KKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSI 432 (621)
Q Consensus 379 --~~~~~L~~~~~~l~~~~~~~~~vei~~~~~~~~~heAGyDA~mTG~vFikL~~~ 432 (621)
.+..+|..+...+. ++ ....|.|-.||++|+.+|.+|...
T Consensus 159 ~~~~s~kL~~L~~~~G--------i~------~~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 159 DGLPSFRLEHLTKANG--------IE------HSNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp TSSBCCCHHHHHHHTT--------CC------CC---CTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHcC--------CC------CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 12335666655441 11 124699999999999999988753
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.25 E-value=4.4 Score=33.81 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--------ceEEEEecCCCchhHHHHHh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--------SCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--------t~a~V~~~~~~~~~~~l~~~ 545 (621)
....|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFS----TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 456788889999999888776554 3454346776655 37999999999999888877
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=77.22 E-value=7.4 Score=33.05 Aligned_cols=60 Identities=8% Similarity=0.208 Sum_probs=43.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+||-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFE----PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHT----TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 356788889999999888876554 3444346666533 26999999999999888766553
No 75
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.75 E-value=4.6 Score=33.07 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=43.1
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEE--EecCce--EEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVR--MVDRSC--AIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~--~id~t~--a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....||+-+.|..++..+|++.++ -||+..+|. ..|... +||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV----QYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH----HHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH----hcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456788899999999888776554 344434563 333333 999999999999888766654
No 76
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.63 E-value=5 Score=33.04 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...|||-+.|..++..+|++.++ -|++..+|....+ ..|||.|.+.+.|...+..++...
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFD----RFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHH----TTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 45677789999999888776554 3444346665543 479999999999998888776543
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=76.44 E-value=5.1 Score=32.12 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=40.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...+|+-+.|..++..+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+ .++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g 69 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH----GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDE 69 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG----GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCC
Confidence 35678889999998888776554 34443466666442 6999999998888766 4443
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.36 E-value=5 Score=32.00 Aligned_cols=59 Identities=10% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+|+-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQ----PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTST----TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 45788889999998888665433 3444345655543 26999999999999888877654
No 79
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=76.26 E-value=5.3 Score=31.74 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=43.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+|+-+.|..++..+|++.+++ ||+-.+|..+- ...|||.|.+.+.|...+..++..
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG----GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc----cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 3677888999999998887765543 44434555432 336999999999999888766554
No 80
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.08 E-value=6.5 Score=32.62 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=40.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHH
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~ 543 (621)
.....|||-+.|..++..+|++.++ -|++...|..+-+. .|||.|.+.+.|...+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFS----TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHG----GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHH----hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 3456688889999999888776554 34443466665542 69999999988887665
No 81
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=75.97 E-value=5.3 Score=33.08 Aligned_cols=60 Identities=7% Similarity=0.164 Sum_probs=44.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+|+-+.|..++..+|++.+++ ||.-.+|... +...|||.|.+.+.|...+..++..
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~----~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN----FGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT----TSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh----CCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3567888899999998888775553 4443466665 4557999999999999887766543
No 82
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=75.83 E-value=2.5 Score=34.71 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=41.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-----eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-----CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-----~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+|+-+.|..++..+|++ +|++++.|..++.+ .|||.|.+.+.|...+..++..
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~-------~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKE-------VFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHH-------HHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHH-------HHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 456788889999998888665 44555555444222 5999999999999888766543
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=75.56 E-value=4.6 Score=34.40 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=45.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+||-+.|..++..+|++.+++ ||+..+|..+ ...|||.|.+.+.|...+..++..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~----~G~i~~v~i~-kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGP----FGPMKEVKIL-NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTT----TSCCCEEEEE-TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh----cCCEEEEEEE-CCEEEEEECCHHHHHHHHHHcCCC
Confidence 4677888899999998887765553 4443466666 788999999999999888776654
No 84
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=75.43 E-value=7.1 Score=33.11 Aligned_cols=60 Identities=10% Similarity=0.186 Sum_probs=43.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC----ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..+.+||-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFG----KYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 356788899999999888776554 3444345655432 36999999999998887766554
No 85
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.20 E-value=4.3 Score=34.62 Aligned_cols=58 Identities=10% Similarity=0.143 Sum_probs=42.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMN 546 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~ 546 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+. .|||.|.+.+.|...+..++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFE----GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHH----TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 456788889999999888776554 34443477776552 79999999988887766544
No 86
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=75.15 E-value=6 Score=32.65 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceE--------EEEecC-------ceEEEEecCCCchhHHHHHhh
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--------VRMVDR-------SCAIVVFGKPGLSNTFKNVMN 546 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~--------V~~id~-------t~a~V~~~~~~~~~~~l~~~~ 546 (621)
++.....+||-+.|..++..+|++.++++ |.... |..+-+ ..|||.|.+.+.|...+..++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 34457888989999999988887765543 33223 544433 269999999999998887765
Q ss_pred hc
Q 007029 547 SK 548 (621)
Q Consensus 547 ~~ 548 (621)
..
T Consensus 85 g~ 86 (99)
T 2la6_A 85 GK 86 (99)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 87
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=74.92 E-value=7.5 Score=33.28 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=44.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..++|+-+.|..++-.+|++.++ -||+..+|.-+ +...|||.|.+.+.|...+..++..
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~----~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQ----EFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHh----ccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 46899899999988888765443 45554466655 4567999999999999888877654
No 88
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.69 E-value=5.5 Score=34.42 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...+||-+.|..++-.+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++.
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~----~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGL----PFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHH----HHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcc
Confidence 57788899999998888776443 455545666664 46799999999999988876643
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=74.64 E-value=6.3 Score=34.05 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=46.7
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+.....|||-+.|..++..+|++.+++ ||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~----~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAE----FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHT----TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3445678888999999998888876653 444346666643 37999999999999888766553
No 90
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=74.56 E-value=5.3 Score=31.90 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=42.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe--------cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV--------DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i--------d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+|+-+.|..++..+|++.+++ ||+-.+|..+ ....|||.|.+.+.|...+..++..
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST----YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT----TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 466888999999998887765543 4443345443 3346999999999999888766554
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=74.56 E-value=4.6 Score=33.24 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=43.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFS----AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 56788889999999888776554 3444346666544 36999999999999888766553
No 92
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=74.31 E-value=5.3 Score=33.39 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
......|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34567788899999999888776554 3454346666533 26999999999998888766553
No 93
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=73.84 E-value=3.3 Score=39.46 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCC-Cccc--hhh-HHhhhCcccccCchHHHHHHHHhcCCCC
Q 007029 323 SQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFP-QVID--VNY-LLKDIGPVKKMTNISATIAYLKNRFFAP 398 (621)
Q Consensus 323 skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP-~I~D--TKy-La~~~~~~~~~~~L~~~~~~l~~~~~~~ 398 (621)
.+.|+||||.=.|+-||-+.| | + +...|+ +++| |=. |+....| .+.+ .
T Consensus 103 ~~~~lvghn~~FD~~FL~~~~----~-------~-~~~~~~~~~iDvsTl~elar~~~P--------~~~~--------~ 154 (186)
T 3tr8_A 103 GKSPLCGNSVCQDRRFLSRYM----P-------R-LNQFFHYRHLDVTTLKILAQRWAP--------QIAA--------A 154 (186)
T ss_dssp TCSCEEESSTHHHHHHHHHHC----H-------H-HHHHSCSCEEEHHHHHHHHHHHCH--------HHHT--------T
T ss_pred CCcEEEEEcHHHhHHHHHHHH----H-------H-cCCCCCCcEEeHHHHHHHHHHHCc--------cccc--------c
Confidence 567999999999999999764 1 1 122344 5889 743 6766543 1110 0
Q ss_pred ceeecCCCCCCCCcccchhhHHHHHHHHH
Q 007029 399 IEMEIPNQANENEGKIHGHNVVKICQLFG 427 (621)
Q Consensus 399 ~~vei~~~~~~~~~heAGyDA~mTG~vFi 427 (621)
+ .....|.|=-||.-|...+-
T Consensus 155 --~------~~~~~HrAl~Da~ati~~l~ 175 (186)
T 3tr8_A 155 --H------IKESQHLALQDIRDSIEELR 175 (186)
T ss_dssp --S------CCCCCSCHHHHHHHHHHHHH
T ss_pred --C------CCCCCcChHHHHHHHHHHHH
Confidence 0 12346889999988877653
No 94
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=73.73 E-value=7.7 Score=32.18 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=42.6
Q ss_pred cCCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+||-+.|. .++-.+|++.++ -||...+|.. ....|||.|.+.+.|...+..++..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFS----PYGHIMQINI-KNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHG----GGSCEEEEEE-CSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 456788889996 899888776554 3444334443 4778999999999999888766543
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=73.71 E-value=6 Score=33.30 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=44.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFC----DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 346788889999999888776554 3444346776543 47999999999999887766553
No 96
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=73.53 E-value=5.3 Score=39.43 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.|..++.-||...+|.... ...+||.|.+.+.|...+..++..
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 567888999999999999987776666666544665543 236999999999999888777553
No 97
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=73.35 E-value=6.5 Score=34.56 Aligned_cols=60 Identities=10% Similarity=0.094 Sum_probs=43.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++. ||+..+|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFER----YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHH----HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998888776553 444346666532 25999999999999888776553
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=73.23 E-value=7.3 Score=35.11 Aligned_cols=60 Identities=5% Similarity=-0.013 Sum_probs=44.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|++...|.++-+ ..|||.|.+.+.|...+..++..
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFS----KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 457888899999999888776554 3444346666543 26999999999999888877654
No 99
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.11 E-value=7 Score=34.47 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
..+|||-+.|..++-.+|++.++ -||...+|..+. ...|||.|.+.+.|...+..++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~----~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGL----PFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHT----TTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhcc
Confidence 46789899999988888775443 455545677664 46799999999999988877654
No 100
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=72.96 E-value=3.3 Score=45.37 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=35.4
Q ss_pred hcCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 48 ISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 48 I~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
+.+..||++|+|.||+.+. .-.|+|+|...++.++. -...+|+.++-|.
T Consensus 6 ~~~~~~vv~DlETTGl~p~-----------------------~d~IIEIgaV~vd~~g~-ii~~~f~~lVkP~ 54 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA-----------------------LDRPAQFAAIRTDSEFN-VIGEPEVFYCKPA 54 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT-----------------------TSCEEEEEEEEECTTSC-BCSCCEEEEBCCC
T ss_pred CCCCCEEEEEEECCCCCCC-----------------------CCeEEEEEEEEEECCCe-EEeeeeEEEECCC
Confidence 4567899999999999321 13599999998765443 2334599999885
No 101
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=72.93 E-value=2.8 Score=39.47 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
..||+||+|.||+.+. .+ | -..-.|+|+|...+. ++......|+.++-|.
T Consensus 9 ~~~vviD~ETTGl~~~--~~----------~------~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~ 58 (194)
T 2gui_A 9 TRQIVLDTETTGMNQI--GA----------H------YEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPD 58 (194)
T ss_dssp CEEEEEEEEESCCCSS--SS----------T------TTTCCEEEEEEEEEE--TTEECSCCEEEECCCS
T ss_pred CCEEEEEeeCCCCCCc--cc----------C------CCCCEEEEEEEEEEE--CCeEeccEEEEEECcC
Confidence 5799999999999431 00 1 012469999998886 3333335688888885
No 102
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.84 E-value=4.8 Score=32.13 Aligned_cols=62 Identities=6% Similarity=0.122 Sum_probs=43.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+|+-+.|..++..+|++.+++++...+ +..+|.... ...|||.|.+.+.|...+ .++..
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 456787889999999998887776532224 323555443 557999999999988776 55443
No 103
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=72.68 E-value=5.7 Score=34.34 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFA----EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 45788899999999888776554 3444346666533 379999999999998888776543
No 104
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=72.56 E-value=2.8 Score=39.74 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.9
Q ss_pred cCCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCc-eeeEeEEEeecCc
Q 007029 49 SSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASK-VIAYPYNFHLFPR 120 (621)
Q Consensus 49 ~~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~-y~~~~fNF~lfp~ 120 (621)
.+..||+||+|.||+.+. .-.|+|+|.... ++.. -....|+.++-|.
T Consensus 7 ~~~~~vviD~ETTGl~p~-----------------------~d~IieIgav~~--~~~~~~~~~~~~~~v~p~ 54 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD-----------------------RDSIIEIATIVT--DAQLNVLAEGPELAIAHS 54 (194)
T ss_dssp -CCEEEEEEEEESCSCTT-----------------------TCCEEEEEEEEE--ETTCCEEEECCCEECCCC
T ss_pred CCCCEEEEEeECCCCCCC-----------------------CCccEEEEEEEE--cCCcceeccCceEEEeCC
Confidence 456899999999999421 125999997763 3332 3445688887774
No 105
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=72.11 E-value=6.7 Score=30.94 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=40.8
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 4 l~V~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFK----DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHT----TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 66788999999888876554 3444346666533 35999999999999888766554
No 106
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=72.00 E-value=5.7 Score=37.77 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.3
Q ss_pred cCCCeEEEecCCCCccC
Q 007029 49 SSSDFIAVSLQNTGSFS 65 (621)
Q Consensus 49 ~~a~FVAiD~EftGi~~ 65 (621)
.+..||++|+|.||+.+
T Consensus 7 ~~~~~v~~D~ETTGL~p 23 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDP 23 (186)
T ss_dssp CTTCEEEEEEEESSSCT
T ss_pred CCCcEEEEEEECCCCCC
Confidence 45689999999999943
No 107
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.90 E-value=10 Score=31.19 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=42.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+. ++.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~ 73 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFK----KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHF 73 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHS----SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCC
Confidence 457788889999999888776554 3444346776643 369999999999988776 543
No 108
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.81 E-value=9.1 Score=32.13 Aligned_cols=60 Identities=10% Similarity=0.165 Sum_probs=42.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c---eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S---CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t---~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++ |++..+|....+ . .|||.|.+.+.|...+..++..
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~----~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYK----YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGG----GSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4567888899999988887765543 444334444332 2 6999999999999888777654
No 109
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.42 E-value=5.3 Score=31.07 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=39.3
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhh
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMN 546 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~ 546 (621)
+|+-+.|..++..+|++.+++ ||+-.+|..+-+ ..|||.|.+.+.|...+..++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~----~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQ----FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTT----TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 566788998888888876554 444345665543 279999999999998877555
No 110
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=71.40 E-value=11 Score=31.41 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=43.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFA----EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHh----ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 45688899999999888776554 3444346666533 35999999999999888766554
No 111
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.27 E-value=4.9 Score=35.79 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=39.1
Q ss_pred CCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEe----cCceEEEEecC-CCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMV----DRSCAIVVFGK-PGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~i----d~t~a~V~~~~-~~~~~~~l~~~~~ 547 (621)
--+|++-+-+.. .+..+|++ +|+++++|.|| |++.+||-|.+ .+.|..++.+++.
T Consensus 18 G~il~v~~l~~~~~sredLke-------~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~ 78 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHI-------LFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANN 78 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHH-------HTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTT
T ss_pred CeEEEEecCCCCcCCHHHHHH-------HHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhc
Confidence 345665556666 77667554 66666677777 67789999999 5788888887644
No 112
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=71.26 E-value=5.1 Score=37.82 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=34.6
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
.||+||+|.||+.+.. ....-.|+|+|...++..++. ....|+.++-|.
T Consensus 11 ~~vviD~ETTGl~~~~-------------------~~~~~~Iieigav~~~~~~g~-i~~~f~~lv~P~ 59 (204)
T 1w0h_A 11 YICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPE 59 (204)
T ss_dssp EEEECCCEECCCTTCC-------------------TTSCCCEEEEEEEEEETTTCS-EEEEEEEEBCCS
T ss_pred EEEEEEEecCCcCCCC-------------------CCCCCcEEEEEEEEEECCCCE-EeeeeeeEECCC
Confidence 5899999999984310 012346999999998753333 346789998886
No 113
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=71.01 E-value=6.1 Score=34.02 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=44.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFG----KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHH----TSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 45788889999999888776554 4454447777665 37999999999999888766553
No 114
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=71.00 E-value=13 Score=33.21 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=45.1
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
++.....+++-+.|..++..+|++.+++ ||+-.+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~----~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTS----FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHT----TSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHh----cCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC
Confidence 3344677888999999998887765543 444345555544 25999999999999888876553
No 115
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.98 E-value=8.5 Score=32.60 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=44.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....||+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFG----QFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGG----GTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHH----hcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 3456788889999999888776554 3444346666533 47999999999999888766553
No 116
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.90 E-value=7.6 Score=32.69 Aligned_cols=60 Identities=12% Similarity=0.246 Sum_probs=45.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFS----PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHH----HHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 456788899999999888877555 344434666654 567999999999999888776553
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=70.67 E-value=4.2 Score=36.22 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=44.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....|||-+.|..++..+|++.++ -||+..+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFE----KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHG----GGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 3455688889999998888776555 34443477766543 6999999999888777665543
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.64 E-value=12 Score=31.16 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=41.7
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 544 (621)
....|||-+.|..++..+|++.++ -|++..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFS----QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 356688788999999888876554 3454446666655 2699999999999987775
No 119
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=70.51 E-value=4.8 Score=39.05 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=33.9
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
..||+||+|.||+.+. . ..-.|||+|...++..... ....|+.++-|.
T Consensus 31 ~~~vviD~ETTGl~~~--~-------------------d~~~IieIgav~v~~~~~~-i~~~f~~lV~P~ 78 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQ--I-------------------HPQEIIEFPILKLNGRTME-IESTFHMYVQPV 78 (224)
T ss_dssp SEEEEECCEECCCC-C--C-------------------SSCCEEEEEEEEEETTTCC-EEEEEEEECCCS
T ss_pred CeEEEEEEEcCCCCCC--C-------------------CCcceEEEEEEEEecCCcE-EeeeeeeEECCC
Confidence 3699999999998421 0 1136999999988754222 456799999885
No 120
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=70.46 E-value=1.9 Score=35.69 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=40.1
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEecC-------ceEEEEecCCCchhHHHHHh
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~ 545 (621)
|+|||-+.|..++-.+|++.+++ || +-.+|..+-+ ..|||.|.+.+.|...+.++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~----~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQS----HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHH----HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH----hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 68899999999999998876654 44 2235555432 24999999999888777654
No 121
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=70.45 E-value=7.4 Score=32.32 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=41.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.....|||-+.|..++..+|++.+++ |+ ..+|..+-+. .|||.|.+.+.|...+ .++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~----~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g 77 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD----LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDG 77 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT----SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh----CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCC
Confidence 34677888899999998887765543 33 2466666442 6999999998888776 5544
No 122
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.43 E-value=11 Score=30.99 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=44.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhcc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
....+||-+.|..++..+|++.+++++. +....|. +-...|||.|.+.+.|...+..++...
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVK-KIRDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEE-ECSSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEE-EeCCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567888899999998888876654311 3323444 335689999999999998888776543
No 123
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.31 E-value=4.9 Score=33.28 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=43.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++ |++..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIP----FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTT----TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc----cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4567888899999998887765553 444345665433 36999999999999888766543
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=70.09 E-value=6.7 Score=32.40 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=42.1
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEec--CceEEEEecCCCchhHHHHHhhhcc
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD--RSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id--~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
+|+-+.|..++..+|++.+++ ||+..+|..+. ...|||.|.+.+.|...+..++...
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 61 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSY----YGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 61 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHH----HCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSC
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCe
Confidence 667788888888888776553 44434676664 4679999999999998888776543
No 125
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=69.95 E-value=7.2 Score=32.66 Aligned_cols=57 Identities=9% Similarity=0.157 Sum_probs=40.9
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 488 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 488 vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
-+||-+.|..++-.+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+..++..
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 478888999999888776544 34443466655321 5999999999999887766543
No 126
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=69.60 E-value=9.1 Score=33.39 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=44.2
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
......|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+..++.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFI----PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHG----GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHH----hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 34567888899999999888776554 3444346665433 3599999999999888776654
No 127
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.44 E-value=9.4 Score=32.30 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=42.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.++ -||...+|..+-+ ..|||.|.+.+.|...+ .++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFS----AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 45788899999999888776554 3444346666622 26999999999999887 66544
No 128
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.22 E-value=8.4 Score=32.27 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=42.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMN 546 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~ 546 (621)
...|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQ----QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCCHHHHHHHHH----hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 45678889999999888776554 344434666652 2369999999999998888776
No 129
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=68.41 E-value=7.1 Score=31.72 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=41.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccc--eEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~--~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++ |++. ..+..-.+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~----~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG----YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT----SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh----cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3578888999999998888765543 3332 12222222 25999999999999888766554
No 130
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.58 E-value=12 Score=31.66 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=43.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
..-|||-+.|..++..+|++.++ -||...+|..+-+ ..+||.|.+.+.|...+..++...
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLK----PFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTT----TTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 45688899999999888776544 3444346666544 359999999999998888776543
No 131
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=67.54 E-value=8.5 Score=31.51 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=42.6
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCS----NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 4677788999998888776555 3444346666543 36999999999999888776553
No 132
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=67.16 E-value=4.8 Score=41.65 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=47.0
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCC----------------ceeeEeEEE
Q 007029 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQAS----------------KVIAYPYNF 115 (621)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~----------------~y~~~~fNF 115 (621)
.||+||+|.||+.+ .+=.|+|+|+..++.+.. .-+...|+.
T Consensus 13 tfVv~DlETTGL~~-----------------------~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~ 69 (314)
T 3u3y_B 13 TLIFLDLEATGLPS-----------------------SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69 (314)
T ss_dssp EEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEE
T ss_pred CEEEEEEECCCCCC-----------------------CCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEE
Confidence 59999999999942 123599999998875420 014577888
Q ss_pred eecCccccccCCCCCceeechhHHHHHHHcCCCccchhhcccccCC
Q 007029 116 HLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLS 161 (621)
Q Consensus 116 ~lfp~~~~~~~~~d~~f~~q~sSl~FL~~~gFDFnk~~~~GI~YLs 161 (621)
++-|.. . +.+.+. .-||+.=..+...|+|-+.
T Consensus 70 lI~P~~---------~--I~~~a~---~IhGIT~e~l~~aG~P~f~ 101 (314)
T 3u3y_B 70 CIAPGK---------A--CSPGAS---EITGLSKAELEVQGRQRFD 101 (314)
T ss_dssp ECBCSS---------C--CCHHHH---HHHSCCHHHHHHTTCCBSC
T ss_pred EECCCC---------C--CCHHHH---HhcCCCHHHHHhCCCCCcH
Confidence 888842 1 223333 3477776666666665543
No 133
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.72 E-value=5.1 Score=32.65 Aligned_cols=58 Identities=7% Similarity=0.104 Sum_probs=43.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc-ceEEEEecCceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAE-AFNVRMVDRSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~-~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
..-+|+-+.|..++..+|++.+++ |+. ...+.......|||.|.+.+.|...+..++.
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGD----RKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHH----TTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHH----cCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 345777889999998888876654 443 2233445677899999999999988887765
No 134
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=66.46 E-value=10 Score=33.46 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=43.3
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..+|+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 67 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFG----SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 67 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ceEEEcCCCCCCCHHHHHHHHH----hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC
Confidence 5678889999999888776554 3444346666554 36999999999999888877553
No 135
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=66.27 E-value=10 Score=32.47 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=40.9
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 488 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 488 vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
-|||-+.|..++-.+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~----~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFS----AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCCCHHHHHHHHh----ccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCC
Confidence 377789999999888776554 3444345555433 25999999999999888876554
No 136
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.11 E-value=11 Score=32.04 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=42.5
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC-ceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR-SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...|||-+.|. .++-.+|++ ++.-||+..+|.-+-+ ..|||.|.+.+.|...+..++.
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~----lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQ----LVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHT----TTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCcCCHHHHHH----HHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcC
Confidence 56888888998 888777664 3334554346665543 5699999999999988887764
No 137
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=66.00 E-value=12 Score=33.19 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=43.1
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....+++-+.|..++..+|++.++ -||+-..|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 154 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFG----KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV 154 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHT----SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhh----cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 3467788899999999888776544 3443334444433 26999999999999888877654
No 138
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.46 E-value=9.3 Score=31.76 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=41.1
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.++ -|+ ..+|..+-+ ..|||.|.+.+.|...+ .++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFR----GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTT----TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 356788888999999888776554 334 235555532 26999999999998877 66543
No 139
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.34 E-value=6.6 Score=32.01 Aligned_cols=59 Identities=15% Similarity=0.300 Sum_probs=42.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEE-EEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNV-RMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V-~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...||+-+.|..++..+|++.+++ |++..+| ..+-+ ..|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSA----FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT----TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 467888899999998887765543 4443355 44443 37999999999999887766543
No 140
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=65.04 E-value=15 Score=31.95 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=43.1
Q ss_pred cCCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEec-CceEEEEecCCCchhHHHHHhhh
Q 007029 485 CEDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVD-RSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 485 ~~~vv~~~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id-~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...+|||-+.|.. ++-.+|++. +.-||+..+|..+. ...|||.|.+.+.|...+..++.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~l----F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKL----AEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTT----TTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHH----HHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3678998899986 888886643 33455434666654 35699999999999988887754
No 141
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=64.37 E-value=12 Score=32.08 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=41.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCc------eEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRS------CAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t------~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
..-|||-+.|..++-.+|++.++ -||+-.+|..+ |.. .+||.|.+.+.|...+..++...
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~----~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCR----KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTS 72 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCCHHHHHHHHH----hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34677789999888888776443 34443455544 222 49999999999998888776543
No 142
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.25 E-value=13 Score=30.42 Aligned_cols=63 Identities=10% Similarity=0.061 Sum_probs=41.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....||+-+.|..++..+|++.+++++.+-. +.+..-.. ..|||.|.+.+.|...+..++..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35677888999999998887765543322110 12222222 35999999999999888766543
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.18 E-value=17 Score=29.68 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=42.8
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++++.+ . ..+.+= ....|||.|.+.+.|...+..++..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v--~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSV--P-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCC--C-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCE--E-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 45678888999999999988766654443 1 223221 1346999999999999888776654
No 144
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=63.94 E-value=6.6 Score=31.88 Aligned_cols=56 Identities=9% Similarity=0.261 Sum_probs=39.3
Q ss_pred EEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+|+-+.|..++..+|++.++ -|| ...+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 4 l~V~nL~~~~t~~~l~~~F~----~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVH----SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHH----TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred EEEeCCCCCCCHHHHHHHHH----HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 56678888888888887655 445 33466655442 5999999999999888777654
No 145
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=63.71 E-value=7.8 Score=33.32 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=41.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+ .++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 99 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFS----SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDE 99 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHH----TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCC
Confidence 46788899999999888876555 3444346666543 26999999999888776 4443
No 146
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=63.36 E-value=13 Score=33.85 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.++ -||+...|.++-+ ..|||.|.+.+.|...+..++..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFC----DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhh----cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45788899999999888776554 3444346776644 46999999999999888776554
No 147
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=63.25 E-value=11 Score=42.27 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=62.8
Q ss_pred HHHHHHhCCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCC-ccchhhHHhhhCcccccCchHHHHHHHHhc
Q 007029 316 VIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQ-VIDVNYLLKDIGPVKKMTNISATIAYLKNR 394 (621)
Q Consensus 316 Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~-I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~ 394 (621)
+.+.|.+...+.||||.=.|+.++.+ +|-- ++. ++||..++.-+.|-....+|..+.+.+...
T Consensus 82 L~~~L~d~~i~kV~hnak~D~~~L~~--~Gi~--------------l~~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~ 145 (605)
T 2kfn_A 82 LKPLLEDEKALKVGQNLKYDRGILAN--YGIE--------------LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKH 145 (605)
T ss_dssp HHHHHTCTTSCEEESSHHHHHHHHHT--TTCC--------------CCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCC
T ss_pred HHHHHcCCCCeEEEECcHHHHHHHHH--CCCC--------------CCCccccHHHHHHHhCCCCCCCCHHHHHHHhcCC
Confidence 34445566789999999999999986 2311 233 899998777777644455677766655211
Q ss_pred CCCCcee-ecCCCCC----CC------CcccchhhHHHHHHHHHHHHHHhcc
Q 007029 395 FFAPIEM-EIPNQAN----EN------EGKIHGHNVVKICQLFGKLCSILKI 435 (621)
Q Consensus 395 ~~~~~~v-ei~~~~~----~~------~~heAGyDA~mTG~vFikL~~~L~~ 435 (621)
. .+.. ++.+.+. .. ..|-|+.||..|..+|-+|...|..
T Consensus 146 ~--~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 146 K--TITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp C--CCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred C--cccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 0000 0111110 00 1144899999999999999887743
No 148
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.03 E-value=14 Score=29.81 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=41.9
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c-----eEEEEecCCCchhHHHHHhhh
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S-----CAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t-----~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.....+|+-+.|..++..+|++.++++ .-.+|..+-+ + .|||.|.+.+.|...+. ++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g 71 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNR 71 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCC
Confidence 456788889999999998988766542 2235555432 2 59999999999888777 544
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=62.92 E-value=13 Score=32.87 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=42.6
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc------eEEEEecCCCchhHHHHHhhhcc
Q 007029 488 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS------CAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 488 vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t------~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.||+-+.|..++..+|++.++ -||+-.+|..+-+. .|||.|.+.+.|...+..++...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 65 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQ----VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ 65 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHG----GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCcCCHHHHHHHHH----hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc
Confidence 477889999999888776554 34443466665332 59999999999998887776543
No 150
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=62.84 E-value=12 Score=33.58 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+||-+.|..++-.+|++.++ -||+..+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~----~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFE----KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHH----HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 467888899999999888876554 34443466666542 6999999999999888776554
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.56 E-value=7.6 Score=33.13 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+.+||-+.|..++..+|++.++ -||+...|... +...|||.|.+.+.|...+..++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFS----RFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHH----TTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 56788888999888888776544 34443355444 3456999999999999888877654
No 152
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.55 E-value=8.2 Score=32.28 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc-ceEEEEe--------cCceEEEEecCCCchhHHHHHhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAE-AFNVRMV--------DRSCAIVVFGKPGLSNTFKNVMN 546 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~-~~~V~~i--------d~t~a~V~~~~~~~~~~~l~~~~ 546 (621)
..-||+-+.|..++..+|++.++ -|++ ..+|.++ ....|||.|.+.+.|...+..++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~----~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIA----KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHH----HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH----HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 45677788999999888887665 3444 3577776 12369999999999987777653
No 153
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=62.36 E-value=9.8 Score=38.65 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=35.4
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
-.||+||+|.||+.... ....-.|||+|...++..... ....|+.++-|.
T Consensus 78 ~~~vviD~ETTGl~~~~-------------------~~~~~~IIeIgaV~v~~~~g~-i~~~f~~lV~P~ 127 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTLE-IEDTFQQYVRPE 127 (299)
T ss_dssp SEEEEECCEECCCTTCC-------------------TTCCCCEEEEEEEEEETTTCC-EEEEEEEEBCCS
T ss_pred ceEEEEEeecccCCCCC-------------------CCCCCceEEEEEEEEECCCCe-EeeeeeeeecCC
Confidence 46899999999993210 113446999999998754322 456799998886
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=62.18 E-value=26 Score=31.96 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=44.8
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....+++-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~----~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLT----SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHH----TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 3467888899999999888776554 3444346666544 25999999999999888876554
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=61.23 E-value=11 Score=35.09 Aligned_cols=62 Identities=10% Similarity=0.039 Sum_probs=45.8
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+.....|||-+.|..++..+|++.+++ ||+...|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~----~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAE----FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHH----TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 344578888999999999888876654 444346766643 36999999999998887766553
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=61.22 E-value=14 Score=30.32 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=42.3
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+||-+.|. .++..+|++.++ -||+..+|.. ....|||.|.+.+.|...+..++..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~----~~G~v~~v~i-~~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFS----PYGHIMQINI-KNAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHT----TTCCCCEEEE-ETTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEE-eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 55678788996 888888776554 3444335544 4778999999999999888876554
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=61.09 E-value=17 Score=32.10 Aligned_cols=62 Identities=10% Similarity=0.214 Sum_probs=43.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.....+++-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFS----QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHH----hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 3456788899999999888776554 3444334544422 359999999999998888776543
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=61.00 E-value=18 Score=32.11 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=44.4
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+|+-+.|..++-.+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFG----YYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHH----HHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 456788888999998888776554 3444346666644 57999999999999888776554
No 159
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.99 E-value=9.9 Score=31.40 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+||-+.|..++..+|++.+++ ||+-..|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~----~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSE----VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHT----TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHh----cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 456777899999998888776553 444345555532 36999999999999887766543
No 160
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=60.88 E-value=4.9 Score=37.82 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 50 SSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 50 ~a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
...||+||+|+||+.+. ..-.|+|+|+.. .+++. . |+.++-|.
T Consensus 4 ~~~~vviD~ETTGl~~~----------------------~~~~iiei~~v~--~~g~~--i--~~~lV~P~ 46 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH----------------------RESGLARCSLVN--VHGAV--L--YDKFIRPE 46 (189)
T ss_dssp --CEEEEEEEEEEETTT----------------------TEEEEEEEEEEC--TTCCE--E--EEEEEECS
T ss_pred CCeEEEEEeECcCcCCC----------------------CCceEEEEEEEe--CCCCE--E--EeeEecCC
Confidence 45899999999998421 023478999853 34432 1 78888885
No 161
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.78 E-value=14 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=39.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHH
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
..-||+-+.|..++..+|++.++ -||+..+|..+-+ ..+||.|.+.+.|...+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~----~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHH----TSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred CCEEEEECCCCCCCHHHHHHHHh----hcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 45688889999999888776554 4555456766643 469999999988886655
No 162
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=60.61 E-value=12 Score=30.60 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec----------CceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD----------RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id----------~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.+++ |++...|..+- ...|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSK----VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHT----TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 456777899999998888776553 44433444442 136999999999998887766554
No 163
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=60.23 E-value=13 Score=35.62 Aligned_cols=60 Identities=13% Similarity=0.225 Sum_probs=45.2
Q ss_pred cCCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|. .++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~----~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~ 95 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFG----VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGH 95 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHH----HHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH----hCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456888899998 899888776554 4454346766644 45999999999999888877654
No 164
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=60.22 E-value=25 Score=29.35 Aligned_cols=61 Identities=7% Similarity=0.064 Sum_probs=40.4
Q ss_pred cCCEEEEecccccc------chhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhcc
Q 007029 485 CEDVVFLWGFRERI------SAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 485 ~~~vv~~~~f~~~~------~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
..+.||+-+.|..+ +..+|++ ++.-||+-.+|....+ ..|||.|.+.+.|...+..++...
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~----~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHK----IFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHH----HHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHH----HHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 35678888898766 3344443 3334554346655532 369999999999998888766543
No 165
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.81 E-value=14 Score=31.15 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=43.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccc----eEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEA----FNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~----~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-+.|..++..+|++.+++++.+-+.. -.|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 456788889999999888877655433321100 02444433 26999999999999888877654
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.73 E-value=15 Score=29.82 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=40.2
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c--eEEEEecCCCchhHHHHHhhh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S--CAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t--~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...-||+-+.|..++..+|++.++ -||+..+| ..|. + .+||.|.+.+.|...+. ++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~----~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g 66 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL----AFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQ 66 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG----GTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH----hcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCC
Confidence 345788889999999888776554 34443466 5554 3 79999999988887766 543
No 167
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.99 E-value=16 Score=30.54 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=40.3
Q ss_pred CCCCcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCc-----eEEEEecCCCchhHHH
Q 007029 481 RKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRS-----CAIVVFGKPGLSNTFK 542 (621)
Q Consensus 481 ~~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t-----~a~V~~~~~~~~~~~l 542 (621)
..+.....||+-+.|..++..||++.+++ |+. ++|..+ |.+ .|||.|.+.+.|+..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~----~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSP----LNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCS----CCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHH----cCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 34456778998999999888887764443 332 355554 333 5999999999888776
No 168
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=58.81 E-value=12 Score=30.12 Aligned_cols=56 Identities=11% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 488 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 488 vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
-+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+ |...+..++..
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFS----QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHH----HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred EEEECCCCCCCCHHHHHHHHH----hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 366778898888888766544 3444346666533 26999999999 88777765543
No 169
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=58.81 E-value=14 Score=33.04 Aligned_cols=44 Identities=9% Similarity=0.165 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHhcCcccCCCCCccccccchHHHHHHHHHHHhh
Q 007029 194 DTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDF 262 (621)
Q Consensus 194 d~~fi~~v~~~I~~Wl~~~~~~~~~~e~l~~~l~~~~~~~e~~~~~p~l~l~~~~~~q~~Li~q~l~~~ 262 (621)
|+.|+.++-..|.+++++.. .+.+.++++|+|+|.|+|++...+
T Consensus 29 dR~~il~lE~~i~~Fi~d~~-------------------------~~~~ef~pmnSy~RllvHrvAe~y 72 (124)
T 1whr_A 29 DRMMLLKLEQEILEFINDNN-------------------------NQFKKFPQMTSYHRMLLHRVAAYF 72 (124)
T ss_dssp THHHHHHHHHHHHHHHHCSS-------------------------CCEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-------------------------ccceECCCCCHHHHHHHHHHHHHh
Confidence 45666666666666665431 133677888999999999976544
No 170
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=58.66 E-value=7.8 Score=32.19 Aligned_cols=59 Identities=14% Similarity=0.104 Sum_probs=40.8
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc--------eEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....-+|+-+.|..++..+|++.++ -|| ..+|..+-+. .|||.|.+.+.|...+ .++..
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~----~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFR----GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSC----SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH----hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 4567788888999998888776544 344 3466665442 6999999999988877 55543
No 171
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=58.56 E-value=20 Score=31.44 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=42.6
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+++-+.|..++..+|++.++ -||.-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 152 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFK----DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 152 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHT----TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCceEEECCCCCCCCHHHHHHHHh----ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC
Confidence 355788889999999888776554 3444345555432 25999999999999888766553
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=58.22 E-value=22 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=44.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
....+++-+.|..++..+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+.+++...
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFS----SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHH----hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 456788889999999888776554 3444335555543 149999999999998888776543
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=58.19 E-value=13 Score=33.44 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=43.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....+++-+.|..++..+|++ +|++++.|..++. ..+||.|.+.+.|...+..++..
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~-------~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKE-------VFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHH-------HCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred ccCCEEEEeCCCCCCCHHHHHH-------HHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3467788889999888877664 5556667777633 35999999999999888876553
No 174
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=57.73 E-value=23 Score=29.03 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHH
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
..-+|+-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFA----RYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----hCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 45688889999999888776554 3444346666543 469999999999986655
No 175
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=57.24 E-value=10 Score=38.83 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=33.8
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCce-eeEeEEEeecCc
Q 007029 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKV-IAYPYNFHLFPR 120 (621)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y-~~~~fNF~lfp~ 120 (621)
.||+||+|.||+.+. . | ....|||+|.+.++..++.- ....|+.++-|.
T Consensus 20 ~~vviD~ETTGl~~~--~-----d-------------~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~ 69 (308)
T 3cg7_A 20 TLLILDFETTSDAAN--Q-----D-------------YPCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 69 (308)
T ss_dssp EEEEEEEEECCBTTB--C-----S-------------CCCCEEEEEEEEEETTTTEEEEEEEEEEECBCS
T ss_pred eEEEEEeecCCCCCC--C-----C-------------CCCCeEEEEEEEEEcCCCEEeeccceeeEECCC
Confidence 589999999999421 0 1 02469999999997533332 223789998885
No 176
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=57.17 E-value=12 Score=29.52 Aligned_cols=58 Identities=7% Similarity=0.060 Sum_probs=37.0
Q ss_pred CEEEEecccccc------chhHHHHhhhhhhhccccceEEEEecC-----ceEEEEecCCCchhHHHHHhhhc
Q 007029 487 DVVFLWGFRERI------SAGILKNMLQGSHEVFAEAFNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 487 ~vv~~~~f~~~~------~~~~i~~~l~~~~~~F~~~~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+.+|+-+.|..+ +..+|++ ++.-||+-.+|....+ ..|||.|.+.+.|...+..++..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~----~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHK----IFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHH----HHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHH----HHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 457777888766 2344443 3334554346665542 46999999999888777765543
No 177
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=55.04 E-value=13 Score=32.16 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=42.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEec---CceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVD---RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id---~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....-|||-+.|..++..+|++.+++ || ....|.... ...+||.|.+.+.|+..+..++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~----~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARE----NSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHH----HTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH----hCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34667888899998888888876554 34 222343331 345999999999999887766553
No 178
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=54.91 E-value=13 Score=31.44 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=40.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHh
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~ 545 (621)
...-|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFG----QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHT----TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 355677789999999888776554 3444346766644 26999999998888776643
No 179
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=54.77 E-value=8 Score=38.11 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred CeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCC--C--------------ceeeEeEEE
Q 007029 52 DFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA--S--------------KVIAYPYNF 115 (621)
Q Consensus 52 ~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~--~--------------~y~~~~fNF 115 (621)
.||+||+|.||+.+ .+=.|+|+|+..++... . .-....|+.
T Consensus 13 ~~vv~D~ETTGl~~-----------------------~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 69 (242)
T 3mxm_B 13 TLIFLDLEATGLPS-----------------------SRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSL 69 (242)
T ss_dssp EEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEE
T ss_pred eEEEEEeecCCCCC-----------------------CCCeeEEEEEEEecCCcccccccccccccccccccchhheeEE
Confidence 59999999999942 12469999998886542 0 024567888
Q ss_pred eecCc
Q 007029 116 HLFPR 120 (621)
Q Consensus 116 ~lfp~ 120 (621)
++-|.
T Consensus 70 li~P~ 74 (242)
T 3mxm_B 70 CIAPG 74 (242)
T ss_dssp ECCCS
T ss_pred EECCC
Confidence 88884
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=54.44 E-value=21 Score=34.92 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=45.5
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc--eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..+.+|+-+.|..++..+|++.++ -||...+|..+.+. .+||.|.+.+.|...+.+++..
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~----~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFN----QFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH----hcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCc
Confidence 356788899999988888776544 45554577777665 6999999999999888876553
No 181
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=54.36 E-value=9.3 Score=29.48 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=36.1
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 543 (621)
+|+-+.|..++..+|++.+++ ||+-.+|.+.-+ ..|||.|.+.+.|...+.
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGG----FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 59 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHH----HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHh----cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH
Confidence 466778888888888876654 444346665432 369999999988887655
No 182
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=54.19 E-value=14 Score=33.06 Aligned_cols=61 Identities=8% Similarity=0.156 Sum_probs=44.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEe-cCceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
..-||+-+.|..++..+|++.+++++.+.+ +..++.-. +...|||.|.+.+.|...+ .++.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 346777889999999999998887765555 32344333 4567999999999998777 5544
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=53.18 E-value=15 Score=32.61 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=43.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|++-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 68 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFR----AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI 68 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHH----TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH----hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC
Confidence 35678889999999888777554 3444346655533 26999999999999888876553
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=53.02 E-value=19 Score=32.32 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=47.2
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccce-EEE-EecCceEEEEecCCCchhHHHHHhhh
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NVR-MVDRSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V~-~id~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.....|||-+.|..++..+|++.+++++.+.+..+ +.. -.....|||.|.+.+.|...+ +++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g 75 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTG 75 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGG
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCC
Confidence 34677888899999999999999998888777222 222 223457999999999999888 4554
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.43 E-value=21 Score=31.20 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=40.2
Q ss_pred CEEEE--eccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhcc
Q 007029 487 DVVFL--WGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 487 ~vv~~--~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
..+|+ -+.+..++-.+|++.++ -||.-.+|... +...+||.|.+.+.|...+.+++...
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~----~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLE----KCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHH----HHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHH----hcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 45777 55787778777775444 34432344433 34569999999999998888887653
No 186
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=52.33 E-value=21 Score=33.09 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=42.8
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-------CceEEEEecCCCchhHHHHHhhhc
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-------RSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-------~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..|||-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+..++..
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 93 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFA----PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV 93 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHG----GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCCHHHHHHHHH----hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC
Confidence 4688899999999888776554 344434666653 346999999999999888876543
No 187
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=51.91 E-value=21 Score=32.52 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-|||-+.|..++-.+|++.++ -|| ...+|..+-|. .+||.|.+.+.|...+..++..
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~----~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIR----SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHH----HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 46788899999998888887655 455 43577776441 5999999999998887766543
No 188
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=51.64 E-value=11 Score=29.04 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=35.7
Q ss_pred EEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 543 (621)
+|+-+.|..++..+|++.+++ ||+-.+|...-+ ..|||.|.+.+.|...+.
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~----~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQ----FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHT----TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred EEEecCCCCCCHHHHHHHHHh----cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 456788988888888776553 444346665543 269999999988876554
No 189
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=51.63 E-value=17 Score=30.29 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc--ceEEEEecCc-------eEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAE--AFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~--~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~ 547 (621)
=+-+||=+.|..++..+|++.++ -||+ ..+|+.+-|. .+||.|.+.+.|...+.+++.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~----~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALS----PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHST----TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHH----hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 35577788999888888776544 3443 1367665431 599999999999999988865
No 190
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=51.22 E-value=24 Score=32.11 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=41.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 544 (621)
.....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFE----QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc
Confidence 3456788889999999888776554 4454346666543 2699999999888877764
No 191
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=51.02 E-value=24 Score=34.24 Aligned_cols=59 Identities=8% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc--cceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA--EAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~--~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-|||-+.|..++-.+|++.++ -|+ ...+|..+-+. .+||.|.+.+.|...+..++..
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~----~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVH----SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHH----TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHH----HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 44678889999998888887655 455 43567666542 5999999999998877766543
No 192
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.26 E-value=20 Score=30.24 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=41.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 544 (621)
....|||-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYE----QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHT----SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 446788899999999888776554 4554446766654 2799999999888866654
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=50.23 E-value=19 Score=32.96 Aligned_cols=60 Identities=8% Similarity=0.159 Sum_probs=43.8
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccc-------cceEEEEe-cCceEEEEecCCCchhHHHHHhhh
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFA-------EAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-------~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.-||+-+.|..++..+|++.+++++.+.+ +..++..- +...|||.|.+.+.|...+ .++.
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 45777899999999999988887765555 32344432 3457999999999999877 5544
No 194
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.13 E-value=30 Score=29.73 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=37.5
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceE-EEEec-Cc-----eEEEEecCCCchhHHHH
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN-VRMVD-RS-----CAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~-V~~id-~t-----~a~V~~~~~~~~~~~l~ 543 (621)
.....|||-+.|..++..+|++.++. |+...+ +...+ .+ .|||.|.+.+.|...+.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~----~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK----LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS----SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh----cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 34578888899999988887764443 333212 22332 22 59999999988887666
No 195
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.94 E-value=15 Score=31.25 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=39.4
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccc-eEEEEec------CceEEEEecCCCchhHHHH
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEA-FNVRMVD------RSCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~-~~V~~id------~t~a~V~~~~~~~~~~~l~ 543 (621)
.+.....|||-+.|..++..+|++.+++ |+.. ..|..+- ...|||.|.+.+.|...+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~----~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEG----IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTT----SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHh----CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 3445677898999999998887765443 3332 2355542 2359999999988876544
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=49.05 E-value=21 Score=31.75 Aligned_cols=58 Identities=12% Similarity=0.269 Sum_probs=42.2
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC---------ceEEEEecCCCchhHHHHHhhhc
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR---------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~---------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.-||+-+.|..++-.+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+..++..
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~ 70 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFE----QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM 70 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH----TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc
Confidence 3577789999999888876554 3454345555422 35999999999999888877653
No 197
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=48.32 E-value=27 Score=34.07 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=45.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.....|||-+.|..++-.+|++.++ -||+..+|... +...|||.|.+.+.|...+..++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~ 81 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFE----RYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGT 81 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTG----GGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHH----hcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCc
Confidence 3456788889999999888776554 34443466655 4556999999999999888877553
No 198
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=48.22 E-value=29 Score=32.13 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=42.6
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+.+|+-+.|..++..+|++.++ -||...+|..+-+ ..+||.|.+.+.|...+..++..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 190 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFE----AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF 190 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHT----TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCcCCHHHHHHHHh----ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC
Confidence 46788889999998888776544 3444345655543 26999999999999888877553
No 199
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=48.17 E-value=37 Score=27.71 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=43.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccce-EE-EEecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAF-NV-RMVDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~-~V-~~id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-|||-+.|..++..+|++.+++++.+-+... +. .--....|||.|.+.+.|...+. ++..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc
Confidence 457888889999999999988877666544111 11 01123469999999999998886 6554
No 200
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=47.77 E-value=12 Score=39.01 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCCCceeeEeEEEeecCc
Q 007029 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPR 120 (621)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~~~y~~~~fNF~lfp~ 120 (621)
..||+||+|.||+.... ....-.|||+|+..++.... -....|+.++-|.
T Consensus 128 ~~~vviD~ETTGl~~~~-------------------~~~~deIIEIgaV~vd~~~g-~i~~~f~~lVkP~ 177 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP-------------------PEFVHEIIEFPVVLLNTHTL-EIEDTFQQYVRPE 177 (349)
T ss_dssp SEEEECCCEECCCTTCC-------------------TTCCCCEEECCEEEEETTTT-EEEEEECCBEECS
T ss_pred CeEEEEEEecCCCCCcC-------------------CCCCCeEEEEEEEEEECCCc-eEeEEEEEEECCC
Confidence 47899999999993210 12345699999999875332 2456788888885
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=47.37 E-value=14 Score=30.73 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=40.0
Q ss_pred CCEEEEecccc------ccchhHHHHhhhhhhhccccceEEEEe-cC------ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRE------RISAGILKNMLQGSHEVFAEAFNVRMV-DR------SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~------~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~------t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
++.|||-+.|. .++..+|++.+ .-||+-.+|..+ |. ..+||.|.+++.|...+..++...
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F----~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLF----SKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHH----HTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHH----HhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 56788888888 66655655433 344443355544 22 259999999999998888776543
No 202
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=46.24 E-value=21 Score=38.41 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=43.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.++ -||+...|..+-+ ..|||.|.+.+.|...+.+++..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFE----VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH----HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 45788899999998888776554 3554446655533 36999999999999888877653
No 203
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.11 E-value=33 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=38.0
Q ss_pred CCcCCEEEEeccccccchhHHHHhhhhhhhccccceE-EEEe-cC-----ceEEEEecCCCchhHHHHH
Q 007029 483 VSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN-VRMV-DR-----SCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 483 ~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~-V~~i-d~-----t~a~V~~~~~~~~~~~l~~ 544 (621)
......||+-+.|..++..+|++.+++ |+...+ |..+ |. ..|||.|.+.+.|...+..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~----~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSG----LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTT----CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh----cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 345678898899999888887654332 222123 4433 22 2599999999888866553
No 204
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=46.04 E-value=10 Score=36.77 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCeEEEecCCCCccCCCCCCCCCCCCHHHHHHHHHhhhccccceeEEeeeeecCC-----C--------ceeeEeEEEee
Q 007029 51 SDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQA-----S--------KVIAYPYNFHL 117 (621)
Q Consensus 51 a~FVAiD~EftGi~~~~~~~~~~~dt~eerY~~~k~~a~~f~iiQ~Gl~~f~~~~-----~--------~y~~~~fNF~l 117 (621)
..||+||+|.||+.+ ..-.|+|+|+..++... . .-....|+.++
T Consensus 10 ~~~v~iD~ETTGl~~-----------------------~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv 66 (238)
T 1y97_A 10 ETFVFLDLEATGLPS-----------------------VEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCM 66 (238)
T ss_dssp SEEEEEEEEESSCGG-----------------------GCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEEC
T ss_pred CeEEEEEeeCCCcCC-----------------------CCCcEEEEEEEEecccccccccccccccccccccceeeEEEE
Confidence 579999999999831 12359999999887541 0 01335788888
Q ss_pred cCc
Q 007029 118 FPR 120 (621)
Q Consensus 118 fp~ 120 (621)
-|.
T Consensus 67 ~P~ 69 (238)
T 1y97_A 67 CPE 69 (238)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 205
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=46.03 E-value=29 Score=31.88 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEe--cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMV--DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~i--d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+.+++-+.|..++..+|++.+++ || .-.+|..+ +...+||.|.+.+.|...+..++..
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~----~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSS----NGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHH----TTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHH----cCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 577888999999988888776653 45 33456654 4456999999999999888877654
No 206
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=45.90 E-value=31 Score=32.90 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=44.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccc-cceEEEEe--cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMV--DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~i--d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...+++-+.|..++..+|++.++ -|| .-.+|..+ +...+||.|.+.+.|...+..++..
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~----~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFS----SNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHH----TTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCccCCHHHHHHHHH----HcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCC
Confidence 57788889999998888776555 445 33466664 5567999999999999888877654
No 207
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=45.21 E-value=52 Score=28.79 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=43.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhcccc---c-eEEEEec----CceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAE---A-FNVRMVD----RSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~---~-~~V~~id----~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...|||-+.|..++..+|++.+++++.+-.- . .+|.... ...|||.|.+.+.|...+..++...
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4678889999999998988766544433211 0 1343332 2269999999999998888776543
No 208
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.41 E-value=15 Score=31.17 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=39.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC----------ceEEEEecCCCchhHHHHHh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR----------SCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~----------t~a~V~~~~~~~~~~~l~~~ 545 (621)
..-||+-+.|..++..+|++.++ -||+ +.+.++-+ ..|||.|.+.+.|...+.++
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~----~~G~-i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFR----RFGP-LVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTT----TTCC-CCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH----hcCC-EEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 45577788999999888776544 3343 23555532 36999999999999888776
No 209
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=44.20 E-value=24 Score=33.44 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=44.3
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccc--eEEEEecC-----ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEA--FNVRMVDR-----SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~--~~V~~id~-----t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.+.+|+.+.|..++-.+|++.++ -||.. ..|.-+.+ ..+||.|.+.+.|...+..++...
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~----~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICD----ELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHH----HHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cceEEEeCCCCCCCHHHHHHHHH----hcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 35688899999988888776544 44543 35665554 369999999999998888886643
No 210
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.90 E-value=44 Score=28.13 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=39.1
Q ss_pred CCCcCCEEEEecc--ccccc-----hhHHHHhhhhhhhccccceEEEEecC---ceEEEEecCCCchhHHHHHhhhc
Q 007029 482 KVSCEDVVFLWGF--RERIS-----AGILKNMLQGSHEVFAEAFNVRMVDR---SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 482 ~~~~~~vv~~~~f--~~~~~-----~~~i~~~l~~~~~~F~~~~~V~~id~---t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+....++++-.. |.++. ..++++.|..++.-||+-.+|...|. ..+||.|.+.+.|...+..++..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3344566665553 22221 12345555554444554346644444 46999999999999887766553
No 211
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=43.74 E-value=48 Score=29.16 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=37.3
Q ss_pred CCEE--EEeccccccchhHHHHhhhhhhhccccceEEEEecCc--eEEEEecCCCchhHHHHHhhhccc
Q 007029 486 EDVV--FLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS--CAIVVFGKPGLSNTFKNVMNSKAV 550 (621)
Q Consensus 486 ~~vv--~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t--~a~V~~~~~~~~~~~l~~~~~~~~ 550 (621)
.+++ +|-+-|..++..+|++ ++.-||...+|.-++.+ .|||.|.+.+.|...+.+++...+
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~----~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYT----VCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHH----HHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CcEEEEEEcCcCCCCCHHHHHH----HHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4444 3445566666665443 22333432345445544 499999999999988888877653
No 212
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.03 E-value=57 Score=26.38 Aligned_cols=57 Identities=18% Similarity=0.427 Sum_probs=37.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-++ .++..+|++.++ -||+..+|... ....|||.|.+.+.|...+..++..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~----~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFS----PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHT----TTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCEEEEcCC--CCCHHHHHHHHh----hCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 456776664 567677665443 34443355443 2457999999999999888776554
No 213
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=42.34 E-value=26 Score=32.26 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCEEEEecccc-ccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRE-RISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~-~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...||+-+.|. .++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 65 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG----VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHK 65 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH----TTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH----hcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCe
Confidence 35788889998 899888776554 3444346666544 469999999999998888776543
No 214
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=42.14 E-value=22 Score=29.81 Aligned_cols=56 Identities=5% Similarity=-0.079 Sum_probs=39.4
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
.....||+-+.|..++..+|++.+++ |+. ...|..+-+ ..|||.|.+.+.|...+.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~----~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSD----CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE 73 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTT----SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHh----cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 45677888999999998888775543 333 224544432 269999999988887665
No 215
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=41.10 E-value=28 Score=32.79 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec------CceEEEEecCCCchhHHHHH
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD------RSCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id------~t~a~V~~~~~~~~~~~l~~ 544 (621)
...||+-++|..++..+|++.++ -||+..+|...- ...|||.|.+.+.|..++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~----~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLE----DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHT----TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred cCEEEecCCCCcCCHHHHHHHHh----cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 35688899999888888776444 344433555552 24699999999988877653
No 216
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=39.99 E-value=28 Score=28.22 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=36.6
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchh
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSN 539 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~ 539 (621)
...+.+|+-+.|..++-.+|++.++ -||+-.+|.-+-+ ..+||.|.+.+.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~----~~G~i~~v~i~~~srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFC----QYGEVVDVFIPKPFRAFAFVTFADDKVAQ 62 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHT----TTSCEEEEECCSSCCSEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHh----ccCCEEEEEEeeCCCCEEEEEECCHHHHH
Confidence 3467888889999998888776544 3444345555533 46999999998887
No 217
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=39.43 E-value=66 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCCcCCEEEEeccccccchhHHHHhhhhhhhccccce--EEEEecC------ceEEEEecCCCchhHHHH
Q 007029 482 KVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAF--NVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 482 ~~~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~--~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
.+..+..||+-+.|..++-.+|++.+++ |+. . +|..+-+ ..+||.|.+.+.|...+.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~----~~i-~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~ 102 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSG----LEI-VPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTT----SCE-EEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhc----CCc-eeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 3446778999999999988887765443 211 3 5555532 359999999998887665
No 218
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=39.00 E-value=48 Score=31.12 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=42.0
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHHhhh
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
.-|||-+.|..++-.+|++.++ -||+-.+|..+-+ ..+||.|.+.+.|...+..++.
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~ 79 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFS----PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 79 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH----hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh
Confidence 3578889999999888776544 3454356776633 2599999999999988877654
No 219
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=38.45 E-value=41 Score=31.84 Aligned_cols=60 Identities=12% Similarity=0.266 Sum_probs=42.6
Q ss_pred CCEEEEeccc-cccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFR-ERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~-~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
..++|+-+.| ..++..+|++.++ .||...+|.-+-+ ..+||.|.+.+.|...+..++...
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~----~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~ 66 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFC----LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNF 66 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHT----TTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHH----hcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3578888898 7888777665333 3444346655544 579999999999999888886543
No 220
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=37.95 E-value=66 Score=33.48 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHhCCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhc
Q 007029 315 EVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNR 394 (621)
Q Consensus 315 ~Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~ 394 (621)
.+.+.+.+...+.||||+=.|+..+++.| |-.| ..++||...+.-+++ ....+|..+.+.....
T Consensus 65 ~L~~ll~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~~--------------~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~~ 128 (375)
T 1yt3_A 65 PLKAILRDPSITKFLHAGSEDLEVFLNVF-GELP--------------QPLIDTQILAAFCGR-PMSWGFASMVEEYSGV 128 (375)
T ss_dssp HHHHHHHCTTSEEEESSCHHHHHHHHHHH-SSCC--------------SSEEEHHHHHHHTTC-CTTCCHHHHHHHHHCC
T ss_pred HHHHHHcCCCceEEEeeHHHHHHHHHHHc-CCCC--------------CcEEEcHHHHHHcCC-CCChhHHHHHHHHcCC
Confidence 34455566677889999999999998643 3222 247999876666665 3356777777755221
Q ss_pred CCCCceeecCCC-C--CCC----CcccchhhHHHHHHHHHHHHHHhcc
Q 007029 395 FFAPIEMEIPNQ-A--NEN----EGKIHGHNVVKICQLFGKLCSILKI 435 (621)
Q Consensus 395 ~~~~~~vei~~~-~--~~~----~~heAGyDA~mTG~vFikL~~~L~~ 435 (621)
... .-... + ... ..+-|+.||+.+-.++-.|...|..
T Consensus 129 ~l~----K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~ 172 (375)
T 1yt3_A 129 TLD----KSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEA 172 (375)
T ss_dssp CCC----CTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CCC----CCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00000 0 001 1133789999999999999998844
No 221
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=37.58 E-value=52 Score=32.44 Aligned_cols=64 Identities=13% Similarity=0.284 Sum_probs=43.5
Q ss_pred CCEEEEecccccc-----chhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhcc
Q 007029 486 EDVVFLWGFRERI-----SAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 486 ~~vv~~~~f~~~~-----~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
...+||-+.|..+ +.....+.|..++.-||+-.+|.-+ +..+|||.|.+.+.|+..+.+++...
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567777887765 2233445555555555554455555 45679999999999999888887765
No 222
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.41 E-value=27 Score=27.98 Aligned_cols=58 Identities=5% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEE-ecCceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRM-VDRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~-id~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+|+-+.|..++..+|++.+++ | .-.+|.. -....|||.|.+.+.|...+..++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~----~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKD----Y-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCS----S-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhh----C-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 345777889999998888765543 2 2223433 22346999999999999888877553
No 223
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.11 E-value=91 Score=26.28 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=22.4
Q ss_pred CCccccccchHHHHHHHHHHHhhcCCccee
Q 007029 240 PSMTIDVCSERQVQLVLKMLEDFSDVLVPL 269 (621)
Q Consensus 240 p~l~l~~~~~~q~~Li~q~l~~~~~~l~~~ 269 (621)
+++.+++.++++|++||++++. .++.+.
T Consensus 30 ~~v~L~PM~~~eRriIH~~l~~--~gl~S~ 57 (94)
T 2cpm_A 30 IKKKFQPMNKIERSILHDVVEV--AGLTSF 57 (94)
T ss_dssp CEEECCCCCSSHHHHHHHHHHH--HTCEEE
T ss_pred CceEeCCCCHHHHHHHHHHHHH--CCCEEE
Confidence 3478899999999999999987 455443
No 224
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.89 E-value=26 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=36.4
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC--ceEEEEecCCCchh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR--SCAIVVFGKPGLSN 539 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~--t~a~V~~~~~~~~~ 539 (621)
..-||+-+.|..++..+|++.++ -||+..+|..+.+ ..|||.|.+.+.|+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~----~~G~i~~v~i~~~~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFS----QYGDVMDVFIPKPFRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHST----TTSCCCEEECCSSCCSCCEEECSCHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH----HcCCeeEEEEecCCCCEEEEEECCHHHHH
Confidence 46688888999999888776443 3444346766644 46999999998886
No 225
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=35.92 E-value=43 Score=29.49 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=39.2
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHHH
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKNV 544 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~~ 544 (621)
..||+-+.|..++..+|++.++ -||+..+|..+-+ ..|||.|.+.+.|...+..
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFG----KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHT----TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred cEEEEeCCCCCCCHHHHHHHHH----hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 4677788999999888776544 3444346665544 3699999999999877764
No 226
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=35.77 E-value=46 Score=30.98 Aligned_cols=59 Identities=8% Similarity=0.209 Sum_probs=38.9
Q ss_pred CEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhcc
Q 007029 487 DVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 487 ~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
-.|+|-+.|..++..+|++.+ .-||...+|...++. .+||.|.+.+.|...+.+++...
T Consensus 47 l~l~VgNL~~~vted~L~~~F----s~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIF----SKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHH----HHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred EEEEEeCcCCCCCHHHHHHHH----HhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 335555667777777765433 344443355555443 59999999999998888776654
No 227
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=35.52 E-value=77 Score=29.66 Aligned_cols=101 Identities=7% Similarity=0.026 Sum_probs=57.0
Q ss_pred HHHHhCCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccc-hhhHHhhhCcccccCchHHHHHHHHh-cC
Q 007029 318 DLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVID-VNYLLKDIGPVKKMTNISATIAYLKN-RF 395 (621)
Q Consensus 318 ~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~D-TKyLa~~~~~~~~~~~L~~~~~~l~~-~~ 395 (621)
+.+...+.+.||||+=-|+..+.+.| |-- ...++| |...+.-++| ....+|..+.+..-. ..
T Consensus 90 ~lL~d~~i~Kv~~~~k~D~~~L~~~~-gi~--------------~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 90 MLLENKSIKKAGVGIEGDQWKLLRDF-DVK--------------LESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHTCTTSEEEESSHHHHHHHHHHHH-CCC--------------CCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBC
T ss_pred HHhcCCCceEEEEeeHHHHHHHHHHC-CCC--------------CCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCc
Confidence 33445567889999999999887643 211 123899 7653333455 345577777665422 11
Q ss_pred CCCceeecCCCCCCC----CcccchhhHHHHHHHHHHHHHHhc
Q 007029 396 FAPIEMEIPNQANEN----EGKIHGHNVVKICQLFGKLCSILK 434 (621)
Q Consensus 396 ~~~~~vei~~~~~~~----~~heAGyDA~mTG~vFikL~~~L~ 434 (621)
.+........=.... ..+-|+.||+.+-.++-.|...|.
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111011111000111 123479999999999988887663
No 228
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=35.13 E-value=37 Score=33.29 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=41.9
Q ss_pred cCCEEEEeccccc-cchhHHHHhhhhhhhccccceEEEEecCc--------eEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRER-ISAGILKNMLQGSHEVFAEAFNVRMVDRS--------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~-~~~~~i~~~l~~~~~~F~~~~~V~~id~t--------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+++.+.|.. ++..+|++.++ -||.-..|..+-+. .|||.|.+.+.|...+ +++..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~----~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFE----GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS 276 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHG----GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE
T ss_pred CCceEEEECCCcccCCHHHHHHHHh----ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC
Confidence 4577888999998 98888776544 34443456655443 3999999999888776 55543
No 229
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=33.62 E-value=73 Score=30.98 Aligned_cols=59 Identities=8% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
+..+++-+.|..++..+|++.++ -||+...|..+-+. .+||.|.+.+.|...+..++..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVR----PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEcCCCCcCCHHHHHHHHH----hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 46788889999999888776554 34443456555332 5999999999999888777553
No 230
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.22 E-value=48 Score=28.26 Aligned_cols=55 Identities=18% Similarity=0.041 Sum_probs=38.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
....||+-+.|..++..+|++.+++ |+. ...|..+-+ ..|||.|.+.+.|...+.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~----~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD----CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK 79 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT----SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH----cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 4567888899999998888776554 333 224444422 259999999988886655
No 231
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=32.69 E-value=41 Score=32.28 Aligned_cols=103 Identities=10% Similarity=0.110 Sum_probs=62.7
Q ss_pred HHHHHHHHhCCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhh-C-cccccCchHHHHHHH
Q 007029 314 REVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDI-G-PVKKMTNISATIAYL 391 (621)
Q Consensus 314 r~Vi~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~-~-~~~~~~~L~~~~~~l 391 (621)
+.+.+.|...+..-|||++=-|+-.+++.| |-.| ..++||..++... + +.....+|..+.+.+
T Consensus 98 ~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~-g~~~--------------~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~ 162 (206)
T 1vk0_A 98 KDLYRFFASKFVTFVGVQIEEDLDLLRENH-GLVI--------------RNAINVGKLAAEARGTLVLEFLGTRELAHRV 162 (206)
T ss_dssp HHHHHHHTCSSSEEEESSCHHHHHHHHHHH-CCCC--------------SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEeccHHHHHHHHHhc-CCCc--------------CCeeeHHHHHHHHcCCCCCCCccHHHHHHHH
Confidence 445666766777789999999999997654 4333 2599997776543 2 223455788888776
Q ss_pred HhcCCCCceeecCCCCC---CCCcccchhhHHHHHHHHHHHHH
Q 007029 392 KNRFFAPIEMEIPNQAN---ENEGKIHGHNVVKICQLFGKLCS 431 (621)
Q Consensus 392 ~~~~~~~~~vei~~~~~---~~~~heAGyDA~mTG~vFikL~~ 431 (621)
-....++..+...+=.. ....+-|.-|||..-.+|-+|..
T Consensus 163 lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 163 LWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 54222111111000001 01123489999999999988863
No 232
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.48 E-value=41 Score=28.70 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=37.9
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFK 542 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l 542 (621)
....|++-+.|...+-.||++.++++ . -.+|..+-+ ..+||.|.+.+.|...+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~----v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 73 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-R----VDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 73 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-C----CCEEEECCCTTCCCCSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-C----eeEEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 34678888999998888887655432 1 136665522 25999999998888776
No 233
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=31.31 E-value=68 Score=28.98 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=38.2
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc-------eEEEEecCCCchhHHHH
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS-------CAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t-------~a~V~~~~~~~~~~~l~ 543 (621)
...+|+-+.|..++..+|++.++ -||....|..+-+. .|||.|.+.+.|...+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFE----QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHT----TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHh----cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 46788899999999888776544 34443355555331 49999999988886665
No 234
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=30.35 E-value=61 Score=30.36 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=40.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-c-C---ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-D-R---SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d-~---t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
..-+||-+.|..++-.+|++.++ -||...+|..+ | . ..+||.|.+.+.|...+..++..
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFS----AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccceECCcccccHHHHHHHHHh----hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 34578889999998888776544 34443344433 2 1 25999999999998887766543
No 235
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=29.36 E-value=48 Score=29.52 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=39.0
Q ss_pred CcCCEEEEeccccccchhHHHHhhhhhhhcccc---ceEEEEecC------ceEEEEecCCCchhHHHH
Q 007029 484 SCEDVVFLWGFRERISAGILKNMLQGSHEVFAE---AFNVRMVDR------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 484 ~~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~---~~~V~~id~------t~a~V~~~~~~~~~~~l~ 543 (621)
.....||+-+.|...+-.+|++.+++ |+. ..+|..+-+ ..+||.|.+.+.|+..+.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~----~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~ 106 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSD----CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK 106 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTT----CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH----hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh
Confidence 45678888899999888887765543 443 224444422 259999999988887666
No 236
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=28.32 E-value=51 Score=29.00 Aligned_cols=55 Identities=5% Similarity=0.190 Sum_probs=39.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-------ceEEEEecCCCchhHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-------SCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-------t~a~V~~~~~~~~~~~l~ 543 (621)
....+++-+.|..++..+|++.++ -||+-.+|..+-+ ..|||.|.+.+.|...+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~----~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFS----QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHH----TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHH----hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 345688889999999888776554 3444346665543 279999999988876654
No 237
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=27.86 E-value=1.5e+02 Score=31.64 Aligned_cols=99 Identities=7% Similarity=0.009 Sum_probs=60.7
Q ss_pred HHHHHhCCCCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCC
Q 007029 317 IDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFF 396 (621)
Q Consensus 317 i~~L~~skKpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~ 396 (621)
.+.|.+...+-||||+=.|+-.+++.| |-.| ..++||...+.-+++ ...+|..+.+.......
T Consensus 175 ~~lL~dp~i~KV~H~~k~Dl~~L~~~~-Gi~~--------------~~~fDT~lAa~lL~~--~~~gL~~Lv~~~Lg~~l 237 (428)
T 3saf_A 175 NESLTDPAIVKVFHGADSDIEWLQKDF-GLYV--------------VNMFDTHQAARLLNL--GRHSLDHLLKLYCNVDS 237 (428)
T ss_dssp HHHHTCTTSEEEESSCHHHHHHHHHHH-CCCC--------------SSEEEHHHHHHHTTC--SCCSHHHHHHHHHCCCC
T ss_pred HHHHcCCCceEEEeehHHHHHHHHHHc-CCCc--------------CceeechhHHHHhCC--CCCCHHHHHHHHcCCCC
Confidence 344556677789999999998887544 3222 237899876655553 23578887776543211
Q ss_pred CCceeecCCCC-CCC-----CcccchhhHHHHHHHHHHHHHHhcc
Q 007029 397 APIEMEIPNQA-NEN-----EGKIHGHNVVKICQLFGKLCSILKI 435 (621)
Q Consensus 397 ~~~~vei~~~~-~~~-----~~heAGyDA~mTG~vFikL~~~L~~ 435 (621)
.. .....+ +.. ...-|+-||+.+-.++-.|...|..
T Consensus 238 ~K---~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~ 279 (428)
T 3saf_A 238 NK---QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWE 279 (428)
T ss_dssp CC---TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred Cc---cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000000 000 1134799999999999999998843
No 238
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=27.74 E-value=81 Score=30.67 Aligned_cols=60 Identities=5% Similarity=0.043 Sum_probs=42.1
Q ss_pred cCCEEEEecccccc-chhHHHHhhhhhhhccccceEEEEecC------ceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERI-SAGILKNMLQGSHEVFAEAFNVRMVDR------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~-~~~~i~~~l~~~~~~F~~~~~V~~id~------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....+++-+.|..+ +..+|++.++ -||....|....+ ..+||.|.+.+.|...+..++..
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALS----AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTC----SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CccEEEEecCCcccCCHHHHHHHhh----CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 45678889999987 6677665433 4444346665543 35999999999999887766554
No 239
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=25.55 E-value=1e+02 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.403 Sum_probs=38.3
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cCceEEEEecCCCchhHHHHHhhhc
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DRSCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
....|||-++ .++..+|++.++ -||+..+|... ....|||.|.+.+.|...+..++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~----~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFS----PFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHS----TTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHH----ccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3456776664 467777666544 34443355554 3457999999999999888776554
No 240
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=25.44 E-value=75 Score=27.38 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=41.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceE--EEEecCc-------eEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--VRMVDRS-------CAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~--V~~id~t-------~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+-+||-+.|..++-.+|++.+++ ||.... |..+-+. .+||.|.+. .|...+..++..
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~----~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAP----YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGG----GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH----hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 456888899999998887765543 333222 5555443 599999999 888888877664
No 241
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=25.41 E-value=84 Score=30.66 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=40.0
Q ss_pred cCCEEEEeccccccchhHHHHhhhhhhhccccceEEEEec-----CceEEEEecCCCchhHHHH
Q 007029 485 CEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVD-----RSCAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 485 ~~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id-----~t~a~V~~~~~~~~~~~l~ 543 (621)
....||+-+.|..++..+|++.++ -||+..+|..+- ...|||.|.+.+.|...+.
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~----~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFK----HCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHG----GGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH----hcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH
Confidence 356788899999999888776554 345444666654 3569999999999988773
No 242
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.26 E-value=54 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=38.0
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEecC-c-----eEEEEecCCCchhHHHH
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDR-S-----CAIVVFGKPGLSNTFKN 543 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-t-----~a~V~~~~~~~~~~~l~ 543 (621)
...||+-+.|...+-.||++.+++++.+=+...+|..+.+ + .|||.|.+.+.|...+.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~ 86 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR 86 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH
Confidence 5688888999988888888755543322111124555532 2 49999999988776554
No 243
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=30.40 E-value=16 Score=31.02 Aligned_cols=59 Identities=14% Similarity=0.274 Sum_probs=38.1
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceE--------EEEecC-------ceEEEEecCCCchhHHHHHhhhc
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFN--------VRMVDR-------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~--------V~~id~-------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
...|||-+.|..++..+|++.+++++.+ .+ |..+-+ ..|||.|.+.+.|...+..++..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGII----KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 3456777888888877766544432221 23 333322 25999999999999887766543
No 244
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=24.04 E-value=1e+02 Score=29.80 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=41.7
Q ss_pred CCEEEEeccccccchhHHHHhhhhhhhccccceEEEEe-cC-----ceEEEEecCCCchhHHHHHhhh
Q 007029 486 EDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMV-DR-----SCAIVVFGKPGLSNTFKNVMNS 547 (621)
Q Consensus 486 ~~vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~i-d~-----t~a~V~~~~~~~~~~~l~~~~~ 547 (621)
...+++-+.|..++..+|++.++ -||+..+|..+ |+ ..+||.|.+.+.|...+..++.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~ 159 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFS----QFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGD 159 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHG----GGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHH----hcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcC
Confidence 34688889999888888776544 44443355444 32 2599999999999999888854
No 245
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=23.95 E-value=83 Score=34.74 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=50.5
Q ss_pred CCEEeehhHHHHHHHHHhccCCCCCCHHHHHHHHHccCCCccchhhHHhhhCcccccCchHHHHHHHHhcCCCCceeecC
Q 007029 325 KPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIP 404 (621)
Q Consensus 325 KpIVGHN~llDL~~iy~~F~gpLP~t~~eFk~~i~~lFP~I~DTKyLa~~~~~~~~~~~L~~~~~~l~~~~~~~~~vei~ 404 (621)
.++||||.=.|+. . +|- -++.++||..++--+.|- ..+|..+.+.....
T Consensus 57 ~~kV~hn~K~Dl~---~--~Gi--------------~~~~~fDT~laAyLL~p~--~~~L~~La~~yl~~---------- 105 (540)
T 4dfk_A 57 RGLLAKDLSVLAL---R--EGL--------------GLPPGDDPMLLAYLLDPS--NTTPEGVARRYGGE---------- 105 (540)
T ss_dssp CSTTHHHHHHHHH---H--TTC--------------CCCBCCCHHHHHHHHCTT--CCCHHHHHHHHTSC----------
T ss_pred CCEEEeccHHHHH---H--cCC--------------CCCcceeHHHHHHHhCCC--CCCHHHHHHHHhhh----------
Confidence 8889999999997 1 121 123478998777666664 44666666554221
Q ss_pred CCCCCCCcccchhhHHHHHHHHHHHHHHh
Q 007029 405 NQANENEGKIHGHNVVKICQLFGKLCSIL 433 (621)
Q Consensus 405 ~~~~~~~~heAGyDA~mTG~vFikL~~~L 433 (621)
-.|.|..||..|..+|-.|...|
T Consensus 106 ------~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 106 ------WTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp ------CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred ------hccchHHHHHHHHHHHHHHHHHH
Confidence 12457899999999999999888
No 246
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=23.79 E-value=61 Score=27.25 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=32.3
Q ss_pred hHHHHhhhhhhhccccceEEEEecC---------ceEEEEecCCCchhHHHHHhhhc
Q 007029 501 GILKNMLQGSHEVFAEAFNVRMVDR---------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 501 ~~i~~~l~~~~~~F~~~~~V~~id~---------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+|++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 26 ~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 26 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3566666654444555445654432 36999999999999888877654
No 247
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=23.40 E-value=74 Score=26.62 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=43.1
Q ss_pred EEEeccccccchhHHHHhhhhhhhccc-cceEEEEecCceEEEEecCCCchhHHHHHh
Q 007029 489 VFLWGFRERISAGILKNMLQGSHEVFA-EAFNVRMVDRSCAIVVFGKPGLSNTFKNVM 545 (621)
Q Consensus 489 v~~~~f~~~~~~~~i~~~l~~~~~~F~-~~~~V~~id~t~a~V~~~~~~~~~~~l~~~ 545 (621)
+.+..+|...+..++.+.+....++=. ..+.|+|+|+.--+|.+++.+.....+...
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHH
Confidence 445677888888899988886555321 228999999999999999997777666655
No 248
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=22.72 E-value=65 Score=27.89 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=32.5
Q ss_pred ccccchhHHHHhhhhhhhccccceEEEEecC-----------ceEEEEecCCCchhHHHHHhhhc
Q 007029 495 RERISAGILKNMLQGSHEVFAEAFNVRMVDR-----------SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 495 ~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~-----------t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
|.+|. .||++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 31 ~~el~-ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 31 PKDID-DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp GGGCC-TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 34443 3566666544444444334443332 24999999999999888877654
No 249
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=22.22 E-value=1.2e+02 Score=26.95 Aligned_cols=58 Identities=9% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEEeccccccchhHHHHhhhhhhhccccceEEEEecCc---eEEEEecCCCchhHHHHHhhhcc
Q 007029 488 VVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRS---CAIVVFGKPGLSNTFKNVMNSKA 549 (621)
Q Consensus 488 vv~~~~f~~~~~~~~i~~~l~~~~~~F~~~~~V~~id~t---~a~V~~~~~~~~~~~l~~~~~~~ 549 (621)
.|+|-.-+..++..+|++ ++.-||+..+|...++. .|||.|.+.+.|...+.+++...
T Consensus 30 ~I~V~NL~~~vte~~L~~----lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQ----IFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp EEEEESCCSCCCHHHHHH----HHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCCCCHHHHHH----HHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 344545566667666443 33334443356555543 39999999999998888877654
No 250
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=21.52 E-value=1.5e+02 Score=25.30 Aligned_cols=48 Identities=6% Similarity=0.012 Sum_probs=32.8
Q ss_pred hHHHHhhhhhhhccccceEEEEecC---ceEEEEecCCCchhHHHHHhhhc
Q 007029 501 GILKNMLQGSHEVFAEAFNVRMVDR---SCAIVVFGKPGLSNTFKNVMNSK 548 (621)
Q Consensus 501 ~~i~~~l~~~~~~F~~~~~V~~id~---t~a~V~~~~~~~~~~~l~~~~~~ 548 (621)
.+|++.|...+.-||+-.+|.-..+ ..+||.|.+.+.|...+.+++..
T Consensus 28 ~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 28 TEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4677776654444554346654444 36999999999999888877654
No 251
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=1.1e+02 Score=25.79 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.3
Q ss_pred ccchhHHHHhhhhhhhccccceEEEEecCceEEEEecCCCchhHHH
Q 007029 497 RISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFK 542 (621)
Q Consensus 497 ~~~~~~i~~~l~~~~~~F~~~~~V~~id~t~a~V~~~~~~~~~~~l 542 (621)
+|-..++...|-+.+.-||..+.|+.+.++ +||.|.+.++|...+
T Consensus 22 ~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 22 NFFDDALIDELLQQFASFGEVILIRFVEDK-MWVTFLEGSSALNVL 66 (91)
T ss_dssp CSCCHHHHHHHHHHHHTTCCEEEEEECSSS-EEEEESSHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEEecCC-EEEEECChHHHHHHH
Confidence 444444444444433445544588888877 899999975554443
Done!