Citrus Sinensis ID: 007029

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-
MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELINLAEL
ccccccccHHHHccccccccccccccccEEEEccccHHHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEcccccccccccccccEEEcHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccCEEEccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEECccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEHHHHHHHcccccccccHHHHHHHHHcccccccCCccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHHHcccccccEEEEEEcccEEEEEEcccccHHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHccccccccccc
***********IRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMG*****************SVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDE****LKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLP**********IRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLAS************QSEIYLSNELINLAEL
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MVPKFKPSPLRIRSFCTKTVQQNPHHWPIKQITKTNFNESLSEIKNHISSSDFIAVSLQNTGSFSSPWHRVSTFDTPETAYLKAKFAAERFQILQFAICPFKLQASKVIAYPYNFHLFPRDELKMGMPSYSFTCQTSYLTAMAKEGFDFNTCIYDGISYLSEAQESTVKVRMGNPMAVDHATKSSSSPALSVADTVFIERVRSRVKHWKNACTDSDIKTEALVTSLRKIVLGGEQFGSRPSMTIDVCSERQVQLVLKMLEDFSDVLVPLIIPAKGGGTQAVRAVLTSSDEDKDLLKRELQTFEFEQNKRVRGFREVIDLISASQKPLVAHNSLNDFTFIHSKFLAPLPPNMNEFICSLRLAFPQVIDVNYLLKDIGPVKKMTNISATIAYLKNRFFAPIEMEIPNQANENEGKIHGHNVVKICQLFGKLCSILKITPDAIESSDDFLASAINRYANIFYSLPGSSQEPTNEEIRGWTNDKRKVSCEDVVFLWGFRERISAGILKNMLQGSHEVFAEAFNVRMVDRSCAIVVFGKPGLSNTFKNVMNSKAVSGPLREMVSDGLKAAGYETYQRVCSSGLWESALADALDKTLASHNCLSEAAYETKQSEIYLSNELINLAEL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Poly(A)-specific ribonuclease PARN-like 3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. Exonucleolytic degradation of the poly(A) tail is often the first step in the decay of eukaryotic mRNAs.probableQ8W4C3

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.1.-.-Acting on ester bonds.probable
3.1.13.-Exoribonucleases producing 5'-phosphomonoesters.probable
3.1.13.4Poly(A)-specific ribonuclease.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3D45, chain A
Confidence level:very confident
Coverage over the Query: 307-549
View the alignment between query and template
View the model in PyMOL