Query 007030
Match_columns 621
No_of_seqs 324 out of 1329
Neff 5.1
Searched_HMMs 46136
Date Thu Mar 28 17:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1845 MORC family ATPases [C 100.0 1.3E-53 2.7E-58 481.3 14.8 410 62-496 100-552 (775)
2 KOG1845 MORC family ATPases [C 99.9 9.5E-25 2.1E-29 247.9 6.5 405 145-598 1-554 (775)
3 PF13589 HATPase_c_3: Histidin 99.7 1.6E-17 3.4E-22 154.7 5.5 91 110-204 4-97 (137)
4 PRK05218 heat shock protein 90 99.7 1.9E-15 4E-20 171.9 19.5 105 87-203 14-144 (613)
5 PRK14083 HSP90 family protein; 99.5 8.3E-14 1.8E-18 157.9 17.5 105 86-203 10-129 (601)
6 COG0326 HtpG Molecular chapero 99.5 1.4E-12 3.1E-17 146.4 19.3 98 99-205 24-146 (623)
7 PTZ00130 heat shock protein 90 99.4 4E-12 8.7E-17 147.0 19.8 96 99-203 85-205 (814)
8 PRK00095 mutL DNA mismatch rep 99.4 5.7E-12 1.2E-16 143.9 19.7 89 107-203 21-116 (617)
9 COG0323 MutL DNA mismatch repa 99.4 2.5E-12 5.3E-17 147.1 16.3 89 107-203 22-117 (638)
10 TIGR00585 mutl DNA mismatch re 99.4 4.8E-12 1E-16 133.0 16.5 87 107-201 21-114 (312)
11 PTZ00272 heat shock protein 83 99.3 9.6E-11 2.1E-15 134.9 21.2 96 98-202 21-140 (701)
12 COG1389 DNA topoisomerase VI, 98.9 1.4E-08 3.1E-13 110.4 11.5 94 110-204 38-140 (538)
13 KOG1979 DNA mismatch repair pr 98.7 2.2E-08 4.7E-13 111.2 6.3 90 107-204 26-122 (694)
14 COG3290 CitA Signal transducti 98.5 1.1E-07 2.4E-12 105.8 7.1 95 104-203 424-521 (537)
15 PRK05559 DNA topoisomerase IV 98.5 8.5E-08 1.8E-12 110.2 6.4 111 86-203 16-140 (631)
16 KOG1978 DNA mismatch repair pr 98.5 1.2E-07 2.5E-12 107.4 6.4 88 107-202 19-113 (672)
17 PF02518 HATPase_c: Histidine 98.5 2.1E-07 4.5E-12 82.0 5.8 92 109-203 6-100 (111)
18 KOG0019 Molecular chaperone (H 98.4 3.3E-07 7.1E-12 102.7 7.4 90 112-204 61-173 (656)
19 PRK14868 DNA topoisomerase VI 98.4 5.9E-07 1.3E-11 103.8 7.8 94 108-203 46-148 (795)
20 PRK05644 gyrB DNA gyrase subun 98.3 6.7E-07 1.5E-11 103.0 6.7 121 71-203 5-140 (638)
21 PRK04184 DNA topoisomerase VI 98.3 9.6E-07 2.1E-11 99.5 7.6 95 110-204 38-142 (535)
22 TIGR01055 parE_Gneg DNA topois 98.3 7.5E-07 1.6E-11 102.4 6.3 107 86-203 12-133 (625)
23 TIGR01052 top6b DNA topoisomer 98.3 1.3E-06 2.9E-11 97.4 8.1 95 108-203 28-131 (488)
24 KOG0020 Endoplasmic reticulum 98.2 1.2E-06 2.7E-11 96.0 5.9 98 99-205 92-218 (785)
25 PRK14867 DNA topoisomerase VI 98.1 5.4E-06 1.2E-10 95.4 7.8 92 111-203 39-139 (659)
26 TIGR01059 gyrB DNA gyrase, B s 98.1 5.3E-06 1.1E-10 96.0 6.6 110 86-203 9-133 (654)
27 PRK10364 sensor protein ZraS; 98.0 9.5E-06 2.1E-10 88.4 7.0 91 108-203 348-438 (457)
28 PRK14939 gyrB DNA gyrase subun 98.0 8.6E-06 1.9E-10 95.3 6.6 111 86-203 15-140 (756)
29 smart00433 TOP2c Topoisomerase 97.9 6.9E-06 1.5E-10 94.1 4.7 86 112-203 5-104 (594)
30 PRK11086 sensory histidine kin 97.8 5.5E-05 1.2E-09 83.1 8.5 90 109-202 434-524 (542)
31 PRK10604 sensor protein RstB; 97.8 4.1E-05 8.9E-10 83.4 7.3 91 108-203 319-413 (433)
32 TIGR02938 nifL_nitrog nitrogen 97.7 6.6E-05 1.4E-09 80.3 7.6 91 110-204 389-485 (494)
33 PRK11360 sensory histidine kin 97.7 6.2E-05 1.3E-09 82.4 6.5 89 109-202 501-590 (607)
34 PRK15053 dpiB sensor histidine 97.7 9.1E-05 2E-09 82.2 7.8 90 110-203 434-529 (545)
35 PRK09303 adaptive-response sen 97.7 0.0001 2.2E-09 79.3 7.6 93 109-204 273-368 (380)
36 cd00075 HATPase_c Histidine ki 97.6 0.00015 3.3E-09 59.8 6.9 88 111-201 3-93 (103)
37 PRK11006 phoR phosphate regulo 97.6 9E-05 2E-09 80.3 7.0 93 108-203 317-413 (430)
38 smart00387 HATPase_c Histidine 97.6 0.0002 4.3E-09 60.1 7.6 89 110-201 7-98 (111)
39 PRK09470 cpxA two-component se 97.6 0.00013 2.9E-09 78.3 7.5 90 109-203 354-447 (461)
40 TIGR01386 cztS_silS_copS heavy 97.6 0.00012 2.5E-09 78.4 6.9 91 108-202 353-447 (457)
41 PRK09467 envZ osmolarity senso 97.6 0.00015 3.3E-09 77.7 7.6 89 109-203 332-423 (435)
42 COG0642 BaeS Signal transducti 97.6 0.00014 3E-09 72.1 6.4 89 107-201 227-317 (336)
43 PRK11100 sensory histidine kin 97.5 0.00018 3.9E-09 77.2 7.3 94 107-203 367-463 (475)
44 PRK10755 sensor protein BasS/P 97.5 0.00012 2.6E-09 76.9 5.7 90 107-202 246-338 (356)
45 TIGR02916 PEP_his_kin putative 97.5 0.00012 2.7E-09 84.5 5.8 87 109-203 580-670 (679)
46 PRK11073 glnL nitrogen regulat 97.5 0.00021 4.6E-09 74.3 6.7 91 109-201 238-336 (348)
47 PRK10549 signal transduction h 97.4 0.00021 4.6E-09 77.2 6.6 93 108-203 352-448 (466)
48 TIGR02966 phoR_proteo phosphat 97.4 0.00037 8E-09 70.6 7.4 93 108-203 229-325 (333)
49 PRK10815 sensor protein PhoQ; 97.4 0.0003 6.6E-09 78.4 6.7 86 110-203 380-468 (485)
50 PRK13837 two-component VirA-li 97.4 0.00035 7.6E-09 82.7 7.5 89 108-202 560-664 (828)
51 KOG1977 DNA mismatch repair pr 97.3 0.00018 3.8E-09 82.3 4.0 84 111-203 24-114 (1142)
52 PLN03237 DNA topoisomerase 2; 97.3 0.00076 1.6E-08 83.3 9.1 87 110-201 79-180 (1465)
53 COG0187 GyrB Type IIA topoisom 97.2 0.00029 6.2E-09 80.3 4.6 111 86-203 14-139 (635)
54 PRK10618 phosphotransfer inter 97.1 0.0011 2.4E-08 79.6 8.1 94 109-204 566-663 (894)
55 TIGR03785 marine_sort_HK prote 97.1 0.00082 1.8E-08 78.6 6.8 92 108-202 597-692 (703)
56 PTZ00109 DNA gyrase subunit b; 97.1 0.00024 5.2E-09 84.1 1.9 119 73-203 99-272 (903)
57 PRK10490 sensor protein KdpD; 97.1 0.0009 2E-08 80.3 6.8 92 108-203 778-872 (895)
58 TIGR01058 parE_Gpos DNA topois 97.0 0.00061 1.3E-08 78.9 5.1 110 86-203 13-137 (637)
59 PRK15347 two component system 97.0 0.001 2.2E-08 78.5 7.0 89 108-203 513-604 (921)
60 PRK11107 hybrid sensory histid 97.0 0.0012 2.6E-08 77.8 7.5 95 108-204 408-509 (919)
61 COG4191 Signal transduction hi 97.0 0.00085 1.8E-08 76.1 5.6 88 111-203 500-591 (603)
62 PRK11091 aerobic respiration c 97.0 0.0012 2.5E-08 77.2 6.8 92 109-203 399-495 (779)
63 TIGR02956 TMAO_torS TMAO reduc 96.9 0.0018 4E-08 76.9 7.9 91 108-203 579-673 (968)
64 PRK09835 sensor kinase CusS; P 96.9 0.0016 3.5E-08 70.6 6.8 91 108-201 375-469 (482)
65 PRK10547 chemotaxis protein Ch 96.9 0.0018 3.9E-08 75.5 7.5 90 112-203 389-513 (670)
66 PRK11466 hybrid sensory histid 96.9 0.0018 3.9E-08 76.7 7.6 89 108-203 561-652 (914)
67 PRK10337 sensor protein QseC; 96.9 0.0013 2.8E-08 71.1 5.8 86 108-202 352-440 (449)
68 PRK13557 histidine kinase; Pro 96.8 0.0024 5.2E-08 69.8 7.2 91 109-203 278-384 (540)
69 PRK09959 hybrid sensory histid 96.8 0.003 6.5E-08 77.2 8.1 95 108-203 828-926 (1197)
70 PRK10841 hybrid sensory kinase 96.7 0.0035 7.6E-08 75.6 7.8 91 109-203 563-657 (924)
71 TIGR01925 spIIAB anti-sigma F 96.4 0.0081 1.7E-07 55.1 6.7 84 111-202 42-127 (137)
72 COG2205 KdpD Osmosensitive K+ 96.3 0.0069 1.5E-07 71.1 7.0 91 109-204 776-870 (890)
73 PRK10600 nitrate/nitrite senso 96.3 0.0052 1.1E-07 69.5 5.9 78 108-203 469-546 (569)
74 PTZ00108 DNA topoisomerase 2-l 96.0 0.0068 1.5E-07 75.3 5.2 88 110-202 59-164 (1388)
75 PLN03128 DNA topoisomerase 2; 96.0 0.0076 1.6E-07 73.9 5.5 88 109-201 53-155 (1135)
76 COG0643 CheA Chemotaxis protei 95.8 0.016 3.5E-07 68.1 6.9 91 113-205 437-565 (716)
77 COG4585 Signal transduction hi 95.8 0.013 2.8E-07 62.7 5.4 76 107-202 278-354 (365)
78 PRK11644 sensory histidine kin 95.8 0.014 3E-07 65.7 5.7 72 109-199 411-482 (495)
79 PHA02569 39 DNA topoisomerase 95.8 0.0063 1.4E-07 70.3 3.1 83 112-201 49-150 (602)
80 KOG0787 Dehydrogenase kinase [ 95.5 0.029 6.3E-07 61.0 6.9 90 110-201 262-368 (414)
81 PRK03660 anti-sigma F factor; 95.3 0.046 9.9E-07 50.6 6.7 84 111-202 42-127 (146)
82 PRK13560 hypothetical protein; 95.3 0.019 4E-07 66.2 4.7 76 112-200 715-792 (807)
83 COG3850 NarQ Signal transducti 95.2 0.043 9.2E-07 62.1 6.9 78 109-205 482-560 (574)
84 PRK04069 serine-protein kinase 95.1 0.023 5E-07 54.5 4.1 84 112-199 46-131 (161)
85 TIGR01924 rsbW_low_gc serine-p 94.1 0.072 1.6E-06 51.2 5.0 84 112-199 46-131 (159)
86 PF13581 HATPase_c_2: Histidin 94.1 0.069 1.5E-06 48.1 4.5 78 111-197 34-113 (125)
87 COG4251 Bacteriophytochrome (l 93.8 0.11 2.3E-06 60.0 6.1 86 111-203 639-731 (750)
88 COG3852 NtrB Signal transducti 93.7 0.087 1.9E-06 56.4 4.9 87 111-202 244-344 (363)
89 COG5000 NtrY Signal transducti 93.5 0.1 2.2E-06 60.1 5.3 89 111-201 603-695 (712)
90 COG2972 Predicted signal trans 93.1 0.088 1.9E-06 58.6 4.1 84 111-203 353-442 (456)
91 PRK10935 nitrate/nitrite senso 92.9 0.19 4.1E-06 56.1 6.4 75 109-203 472-549 (565)
92 COG4192 Signal transduction hi 92.4 0.23 4.9E-06 55.7 6.0 61 111-172 567-627 (673)
93 PRK13559 hypothetical protein; 92.0 0.28 6.1E-06 51.5 5.9 77 110-201 269-348 (361)
94 COG5002 VicK Signal transducti 91.7 0.29 6.2E-06 53.4 5.6 88 111-201 345-436 (459)
95 COG3851 UhpB Signal transducti 91.2 0.44 9.5E-06 52.2 6.3 97 86-201 388-484 (497)
96 COG2172 RsbW Anti-sigma regula 89.1 0.49 1.1E-05 45.3 4.2 81 111-201 43-128 (146)
97 COG3920 Signal transduction hi 87.7 0.68 1.5E-05 47.2 4.5 47 112-158 126-174 (221)
98 PF14501 HATPase_c_5: GHKL dom 82.0 2.7 5.8E-05 36.9 5.0 42 111-154 8-51 (100)
99 COG3275 LytS Putative regulato 70.5 5 0.00011 45.6 4.2 45 112-158 460-507 (557)
100 KOG0355 DNA topoisomerase type 68.0 16 0.00034 44.1 7.7 49 109-160 54-102 (842)
101 COG4564 Signal transduction hi 66.3 11 0.00024 41.3 5.5 76 111-203 358-438 (459)
102 PF01119 DNA_mis_repair: DNA m 37.0 88 0.0019 28.5 5.8 77 396-475 23-118 (119)
103 KOG0193 Serine/threonine prote 35.0 9.8 0.00021 44.5 -0.9 34 586-620 445-481 (678)
104 cd03483 MutL_Trans_MLH1 MutL_T 24.3 1.8E+02 0.0039 26.9 5.7 79 396-475 32-126 (127)
105 PF05399 EVI2A: Ectropic viral 23.3 1.6E+02 0.0036 30.4 5.5 24 580-603 114-150 (227)
106 PRK09697 protein secretion pro 20.5 58 0.0012 30.5 1.5 21 6-26 84-104 (139)
No 1
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-53 Score=481.31 Aligned_cols=410 Identities=48% Similarity=0.708 Sum_probs=361.5
Q ss_pred ChhhhHhhhccccCccCccccCCCcCcccccccccccccccccccccHHHHHHHhhccchhhhhCCCceEEEEEEEccCC
Q 007030 62 APESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD 141 (621)
Q Consensus 62 ~~~~~~fw~ag~~~~~~~~~~~~~~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~ 141 (621)
+..||||||||+|..+.........++..|+.+||+|||+|+|+|+|+++|++||+|||+|.+.++|+.+.|+......+
T Consensus 100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d 179 (775)
T KOG1845|consen 100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMD 179 (775)
T ss_pred hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccc
Confidence 44599999999999944455555567789999999999999999999999999999999999999999988887664444
Q ss_pred C-CCeEEEE-----ECCCCCCHHHHHHhhhcccccccC-CCCcccccccccccccccCCEEEEEee--eCCCCCcceeee
Q 007030 142 N-SPALVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIG 212 (621)
Q Consensus 142 ~-~~~I~I~-----DNG~GMs~e~l~~~~~~G~S~K~~-~~~IGrfGiGlKsAs~~lG~~v~V~Sr--~~~~~~~t~svg 212 (621)
. ...++|+ |||+||.++.+.++|.+|++.|.. ...+|+||+|||++.|++|.++.+++| ...+.+.++++|
T Consensus 180 ~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsig 259 (775)
T KOG1845|consen 180 IFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIG 259 (775)
T ss_pred ccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEE
Confidence 4 5567777 679999999999999999998874 789999999999999999999999999 444667899999
Q ss_pred eeeeeehhccCCCCeEEee----eeccCCCCccccccccCccccchhhhh-----hcccCCCCChHHHHHh---------
Q 007030 213 LLSYTYLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ--------- 274 (621)
Q Consensus 213 llS~tfl~~~~~~di~VPi----~d~d~~~~~~~~iv~~~~e~w~~~l~i-----Il~ySPf~se~eL~~q--------- 274 (621)
+|||+||+.++.+|++||| .+++...+.+.+|++.+..+|..++.+ +++|+||.++.+++.|
T Consensus 260 lls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~ 339 (775)
T KOG1845|consen 260 LLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF 339 (775)
T ss_pred EEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc
Confidence 9999999999999999999 888888888889988888999999888 9999999999999988
Q ss_pred ------hhccCCCeeEEEEecc--cccCCCceeccCCCChhhhhhcccccccccccchhhhhhhcccchhhhhhhhhhhh
Q 007030 275 ------FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYA 346 (621)
Q Consensus 275 ------f~~i~~hGT~III~nL--w~~~dg~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYl 346 (621)
++.++.+||.+|+|++ |....|..|+||+.++++|.. .+.++++.|.
T Consensus 340 ~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~ 394 (775)
T KOG1845|consen 340 PEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEA 394 (775)
T ss_pred chhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcc
Confidence 7888899999999999 999999999999988776541 3466888999
Q ss_pred hhhccCCCCceEEEEcCeecccccccccccCCccccCCCCCcCcC---cccceEEEEeeeccCC-CcccCceEEEEeCce
Q 007030 347 SMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL---KDATAETTIGFIKEAP-ALSVSGFNVYHKNRL 422 (621)
Q Consensus 347 SILYL~~~~~fkI~LnG~~V~~~~i~~~L~~~e~~~YkPq~~~~v---~~~~v~itiGf~kea~-~~~~~G~~vY~~nRL 422 (621)
+|||+..+++|++.+.|+.+.++.+....+..+...|.|+....- .........||.+.++ ..+..+++|||++||
T Consensus 395 sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~l 474 (775)
T KOG1845|consen 395 SILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRL 474 (775)
T ss_pred cccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcc
Confidence 999999899999999999999999999888889999999976431 1233345578877765 457789999999999
Q ss_pred ec----ccccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCCc
Q 007030 423 IR----PFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSY 496 (621)
Q Consensus 423 I~----~~ekVg~~~~~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l~~YW~~~~~~~gy~~~~~~~~ 496 (621)
|. |+|+.|+...+.++++++++.++|.++++++|+|+.+..-...+....++++.||...|+.++|..+.....
T Consensus 475 ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~ 552 (775)
T KOG1845|consen 475 IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKE 552 (775)
T ss_pred hhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhh
Confidence 99 999999999999999999999999999999999999999999999999999999999999999987774443
No 2
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=9.5e-25 Score=247.86 Aligned_cols=405 Identities=21% Similarity=0.218 Sum_probs=276.7
Q ss_pred eEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccccccCCEEEEEeeeCCCCCcceeeeeeeeeehhccCC
Q 007030 145 ALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224 (621)
Q Consensus 145 ~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~~~~~t~svgllS~tfl~~~~~ 224 (621)
++++.|||.||+++++.++..|+. ....+|.||+|+|+++|++|+++.++|+.. .+++++|+|+||++....
T Consensus 1 ~l~~~Ddg~Gms~d~a~~~~~f~~----~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~----~~~s~~~~sqt~~e~~~~ 72 (775)
T KOG1845|consen 1 MLCFLDDGLGMSPDEAPKAINFAV----GLYGIGDYGNGLKSGSMRIGKDFILFTKKE----STMSCLFLSQTFHESEAD 72 (775)
T ss_pred CcccccCCCCcCchhhhhhhhhcc----cccccccccCcccccccccCcccceeeccc----cccceeeeeccccccccc
Confidence 478999999999999999998843 456899999999999999999999999984 378999999999999999
Q ss_pred CCeEEeeeeccCCCCccccccccCccccchhhhhhcccCCCCChHHHHHhhhcc-CCCe-eEEEEecccccCCCceeccC
Q 007030 225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDI-GPHG-TKVIIYNLWMNDEGVYELSF 302 (621)
Q Consensus 225 ~di~VPi~d~d~~~~~~~~iv~~~~e~w~~~l~iIl~ySPf~se~eL~~qf~~i-~~hG-T~III~nLw~~~dg~~Eldf 302 (621)
+.++||+..|+..+.. ++ .+++.+++++|+.+|+|.+++.++.+++++ +..| |.+||.|+++...+.+++++
T Consensus 73 ~~vvvP~~t~~~~~~~---~~---~~k~~~~l~~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~ 146 (775)
T KOG1845|consen 73 DAVVVPCPTFNPRTRE---IV---TEKFAFSLEAIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKW 146 (775)
T ss_pred ccceeccccccccccc---cc---ccccccccchhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCccccc
Confidence 9999999999986643 32 377888999999999999999999999987 4555 99999999999999999999
Q ss_pred CCChhhhhhcccccccccccchhhhhhhcccchhhhhhhhhhhhhhhccCCCCceEEEEcCeeccccccccccc--CCc-
Q 007030 303 DDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELK--FPK- 379 (621)
Q Consensus 303 ~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYlSILYL~~~~~fkI~LnG~~V~~~~i~~~L~--~~e- 379 (621)
..|+.||++.++-.+... + ..|+.++|+. |.|.|++++..|+...+..+.. .++
T Consensus 147 a~~a~aeLldnalDEi~~------------------~---~tf~~vd~I~--p~~d~~i~a~~v~~~~~s~~gg~~~~~~ 203 (775)
T KOG1845|consen 147 AKGAIAELLDNALDEITN------------------G---ATFVRVDYIN--PVMDIFIRALVVQLKRISDDGGGMKPEV 203 (775)
T ss_pred ccChhhhhcccccccccc------------------c---cceEEeeeec--ccccccceeEEeeccceeccccccCHHH
Confidence 999999999765433211 1 1236777876 7888888888887665332221 111
Q ss_pred ---------cccCC-------------CCC---cCc-C--c------ccceEEEEeee-----ccC--------------
Q 007030 380 ---------VISYR-------------PQV---SAP-L--K------DATAETTIGFI-----KEA-------------- 406 (621)
Q Consensus 380 ---------~~~Yk-------------Pq~---~~~-v--~------~~~v~itiGf~-----kea-------------- 406 (621)
...++ ... +.+ + . .....-.+|++ +..
T Consensus 204 i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t~~~d~iv~~~~i~~ 283 (775)
T KOG1845|consen 204 IRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKTGKRDFIVPMRLIKM 283 (775)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccccCCceeEecchhhh
Confidence 00000 000 000 0 0 00000112211 000
Q ss_pred --------C------CcccCceEEEE------------------------------------eCceecccccccCCCCcc
Q 007030 407 --------P------ALSVSGFNVYH------------------------------------KNRLIRPFWKVTGDGSLK 436 (621)
Q Consensus 407 --------~------~~~~~G~~vY~------------------------------------~nRLI~~~ekVg~~~~~~ 436 (621)
| .....+.+++- .+.+..+.+++......+
T Consensus 284 ~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~~~~~~g~~~I~Y~~~~ 363 (775)
T KOG1845|consen 284 DYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFNIMNKPGTDVIIYNLRR 363 (775)
T ss_pred hhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhhhccCCCceeeeechhh
Confidence 0 01122334443 233333333332222234
Q ss_pred CceEEEEEecCccCCCCCcc-------cccccHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCCCcc------------
Q 007030 437 GNGVVGVLEANFIEPTHDKQ-------DFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYN------------ 497 (621)
Q Consensus 437 grGVIGVlea~fLePthnKQ-------dFe~t~~y~~L~~~L~e~l~~YW~~~~~~~gy~~~~~~~~~------------ 497 (621)
..++-|+++++|-...|+.| .++.+-+|..++..+..++..+|..++-.++|+...+..+.
T Consensus 364 ~~~~~g~~e~df~l~~~~i~~~~~~~~~s~~sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~ 443 (775)
T KOG1845|consen 364 WKGDEGILELDFDLDPHVIPWTYCHSHLSEASILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQR 443 (775)
T ss_pred hcccccceeeccccCcccccccchhhhhhcccccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccch
Confidence 66788999999988889998 67888899999999999999888777766666433322211
Q ss_pred ---ccCCCCcCCCCCCCCCCCCCCchhhhcCCcccccc-----ccccCcccccccceeeccccCCCCccccccccccCCC
Q 007030 498 ---MESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQE-----DMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHD 569 (621)
Q Consensus 498 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (621)
...++.....+ |-+.+++.+.+.+++.+ ++ .+..+|++.++..++ ..+.+.|.+.-+.++
T Consensus 444 ~~~~~~~~~~~~~~---~~~~~~~~~nV~~~~~l--ie~~~~~~~k~~n~~~s~~~~~------~~il~~n~~~~a~~~- 511 (775)
T KOG1845|consen 444 LIKLSPKPGFVKDA---PRPIDVQQFNVSHGPRL--IEHGCRPFVKIDNATGSLGQAV------IPILVGNFVETAPDS- 511 (775)
T ss_pred hhcccCCCCccccc---CCCCCccCCccccCCcc--hhhcccceeeecCCCccccccc------cceecccccccCCCc-
Confidence 11222222232 23344558888888777 56 777888888888888 334444444444433
Q ss_pred CCC--------------CCCCCCCcchhhHhhHHHHHHHHHHH
Q 007030 570 NDG--------------TPEGHPVTISADQICEENIQLFIKYV 598 (621)
Q Consensus 570 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (621)
+++ .+.+........+|.+++.|++++|.
T Consensus 512 ~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~~ 554 (775)
T KOG1845|consen 512 QGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKERE 554 (775)
T ss_pred cccccccccccchhhhhhcccccccccccccCccchhhhhhhc
Confidence 222 44677888889999999999999984
No 3
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.69 E-value=1.6e-17 Score=154.67 Aligned_cols=91 Identities=35% Similarity=0.549 Sum_probs=79.1
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc---CCCCcccccccccc
Q 007030 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK---ANKTIGQYGNGFKT 186 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~---~~~~IGrfGiGlKs 186 (621)
+.||+|||+||+|| .|+.|.|.+.... .+...|.|.|||.||+++++.+++.+|.+.+. ....+|+||+|+|.
T Consensus 4 ~~al~ElI~Ns~DA---~a~~I~I~i~~~~-~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~~~~~~~G~~G~G~k~ 79 (137)
T PF13589_consen 4 EDALRELIDNSIDA---GATNIKISIDEDK-KGERYIVIEDNGEGMSREDLESFFRIGRSSKKSEKDRQSIGRFGIGLKL 79 (137)
T ss_dssp THHHHHHHHHHHHH---HHHHEEEEEEEET-TTTTEEEEEESSS---HHHHHHHTTCHHTHHHHHHHGGGGGGGTSGCGG
T ss_pred HHHHHHHHHHHHHc---cCCEEEEEEEcCC-CCCcEEEEEECCcCCCHHHHHHhccccCCCCCchhhhhcCCCcceEHHH
Confidence 36999999999999 7899999998753 46789999999999999999999999999887 46789999999999
Q ss_pred cccccCCEEEEEeeeCCC
Q 007030 187 STMRLGADVIVFSRATHE 204 (621)
Q Consensus 187 As~~lG~~v~V~Sr~~~~ 204 (621)
|++++|+.+.|.|++.+.
T Consensus 80 A~~~~~~~~~v~S~~~~~ 97 (137)
T PF13589_consen 80 AIFSLGDRVEVISKTNGE 97 (137)
T ss_dssp GGGGTEEEEEEEEESTTS
T ss_pred HHHHhcCEEEEEEEECCC
Confidence 999999999999999754
No 4
>PRK05218 heat shock protein 90; Provisional
Probab=99.67 E-value=1.9e-15 Score=171.94 Aligned_cols=105 Identities=28% Similarity=0.349 Sum_probs=77.5
Q ss_pred CcccccccccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 007030 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (621)
Q Consensus 87 ~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~ 153 (621)
++++-+.-+ ||++.. .+|+|||.||+||+.. ++....|.+..+. +...|+|.|||+
T Consensus 14 ~ll~ll~~~---LYs~~~------v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~--~~~~i~I~DnG~ 82 (613)
T PRK05218 14 QLLHLMIHS---LYSNKE------IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDK--EARTLTISDNGI 82 (613)
T ss_pred HHHHHHhhh---hcCCch------HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcC--CCCeEEEEECCC
Confidence 445555544 777754 5899999999999731 2334556655432 334699999999
Q ss_pred CCCHHHHHHhh-hccccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 154 GMDPESLRKCM-SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
||+.+++...+ ++|+|.+. +...+|+||+||. ++|.++.+++|.||+.+
T Consensus 83 GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~-S~f~va~~v~V~Sr~~~ 144 (613)
T PRK05218 83 GMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFY-SAFMVADKVTVITRSAG 144 (613)
T ss_pred CCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCch-hhhhccCEEEEEEcCCC
Confidence 99999999765 58887421 3467999999996 57889999999999864
No 5
>PRK14083 HSP90 family protein; Provisional
Probab=99.55 E-value=8.3e-14 Score=157.92 Aligned_cols=105 Identities=27% Similarity=0.464 Sum_probs=78.8
Q ss_pred cCcccccccccccccccccccccHHHHHHHhhccchhhhhCC-------CceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 007030 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (621)
Q Consensus 86 ~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-------At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e 158 (621)
.++++.++-+ |+++.. .+|+|||.||+||.... ...|.|.+. + .+...|+|.|||.||+.+
T Consensus 10 ~~ll~ll~~~---LYs~~~------iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d--~~~~~l~I~DnGiGmt~e 77 (601)
T PRK14083 10 RGVIDLLSRH---LYSSPR------VYVRELLQNAVDAITARRALDPTAPGRIRIELT-D--AGGGTLIVEDNGIGLTEE 77 (601)
T ss_pred HHHHHHHHHh---hcCCcH------HHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-c--CCCcEEEEEeCCCCCCHH
Confidence 3456666544 676643 68999999999996320 114555552 2 246789999999999999
Q ss_pred HHHHh-hhcccccccC-------CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 159 SLRKC-MSLGYSTKKA-------NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 159 ~l~~~-~~~G~S~K~~-------~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++.+. ..+|.|.+.. ...||+||+||. |+|.+|..+.|.||..+
T Consensus 78 el~~~l~~ig~S~k~~~~~~~~~~~~IG~FGIGf~-S~F~vad~v~V~Tr~~~ 129 (601)
T PRK14083 78 EVHEFLATIGRSSKRDENLGFARNDFLGQFGIGLL-SCFLVADEIVVVSRSAK 129 (601)
T ss_pred HHHHHHhhhccchhhhhhhcccccccccccccceE-EEEEecCEEEEEeccCC
Confidence 99975 5699888753 246999999996 56779999999999853
No 6
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-12 Score=146.41 Aligned_cols=98 Identities=28% Similarity=0.417 Sum_probs=75.3
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (621)
||||.. ..|+|||.||.||+.. +...+.|.+..+. ....|+|.|||+||+++++...+.
T Consensus 24 lYSnKe------IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk--~~kTLtI~DNGIGMT~~Ev~~~Lg 95 (623)
T COG0326 24 LYSNKE------IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDK--DNKTLTISDNGIGMTKDEVIENLG 95 (623)
T ss_pred ccCCcH------HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcc--cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 677765 4799999999999831 1224566666532 467999999999999999987664
Q ss_pred -ccccccc-----------CCCCcccccccccccccccCCEEEEEeeeCCCC
Q 007030 166 -LGYSTKK-----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (621)
Q Consensus 166 -~G~S~K~-----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~~~ 205 (621)
++.|..+ +..-||+||+||.+|+| .+.+|+|.||..+.+
T Consensus 96 TIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFm-VAdkV~V~T~~~~~~ 146 (623)
T COG0326 96 TIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFM-VADKVTVITRSAGED 146 (623)
T ss_pred HhhhccHHHHHHHhccccccccccccccchhhheee-eeeeEEEEeccCCCC
Confidence 8877654 23449999999987655 999999999997643
No 7
>PTZ00130 heat shock protein 90; Provisional
Probab=99.43 E-value=4e-12 Score=146.96 Aligned_cols=96 Identities=24% Similarity=0.353 Sum_probs=73.3
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHh-h
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-M 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~-~ 164 (621)
|||+.- .+|+|||.||.||... ....+.|.|..+. ....|+|.|||.||+++++.+. .
T Consensus 85 LYS~ke------IFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~--~~~tLtI~DnGIGMT~eEl~~nLg 156 (814)
T PTZ00130 85 LYTQKE------VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSITDTGIGMTKEDLINNLG 156 (814)
T ss_pred cCCCCC------ceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECC--CCCEEEEEECCCCCCHHHHHHHhh
Confidence 777765 4799999999999741 1235667776532 3568999999999999999764 5
Q ss_pred hccccccc-----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK-----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~-----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|... +..-||+||+||.+ +|-.+.+++|.||+.+
T Consensus 157 TIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYS-aFmVAdkV~V~Trs~~ 205 (814)
T PTZ00130 157 TIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYS-AFLVADKVIVYTKNNN 205 (814)
T ss_pred hhcccccHHHHHHhhccCCCcccccccccchhh-eeeecCEEEEEEcCCC
Confidence 68877532 24579999999964 5669999999999754
No 8
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.42 E-value=5.7e-12 Score=143.85 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=72.7
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------CCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~IGr 179 (621)
..|.++|.|||+||+|| ||+.|.|.+.. ++...|+|.|||+||+++++..++....++|.. ..++|.
T Consensus 21 ~~~~svvkElveNsiDA---gat~I~v~i~~---~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t~Gf 94 (617)
T PRK00095 21 ERPASVVKELVENALDA---GATRIDIEIEE---GGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRTLGF 94 (617)
T ss_pred cCHHHHHHHHHHHHHhC---CCCEEEEEEEe---CCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhccccCCc
Confidence 56778999999999999 99999999854 356789999999999999999998866666652 367899
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.|.|+.+ ...-.+++|.|++.+
T Consensus 95 rGeAL~s--I~~vs~l~i~s~~~~ 116 (617)
T PRK00095 95 RGEALPS--IASVSRLTLTSRTAD 116 (617)
T ss_pred chhHHHh--hhhceEEEEEEecCC
Confidence 9999743 334458999999864
No 9
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.5e-12 Score=147.12 Aligned_cols=89 Identities=21% Similarity=0.342 Sum_probs=73.4
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc------CCCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK------ANKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~------~~~~IGr 179 (621)
+.|.+|+.|||+||+|| ||+.|.|.+.. +|...|.|.|||+||+++++.-++. ..+|+-. ...++|.
T Consensus 22 erPaSVVKELVENSlDA---GAt~I~I~ve~---gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~~~DL~~I~TlGF 95 (638)
T COG0323 22 ERPASVVKELVENSLDA---GATRIDIEVEG---GGLKLIRVRDNGSGIDKEDLPLALLRHATSKIASLEDLFRIRTLGF 95 (638)
T ss_pred ecHHHHHHHHHhccccc---CCCEEEEEEcc---CCccEEEEEECCCCCCHHHHHHHHhhhccccCCchhHHHHhhccCc
Confidence 56778999999999999 99999998864 5777899999999999999998776 5555433 3467888
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.|-.| +|.+-..+++|.||+.+
T Consensus 96 RGEAL--~SIasVsrlti~Srt~~ 117 (638)
T COG0323 96 RGEAL--ASIASVSRLTITSRTAE 117 (638)
T ss_pred cHHHH--HHHHhhheeEEEeecCC
Confidence 88765 67778899999999654
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=4.8e-12 Score=133.03 Aligned_cols=87 Identities=21% Similarity=0.337 Sum_probs=69.6
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-------~~~~IGr 179 (621)
..+..||.|||+||+|| +|+.|.|.+.. ++...|.|.|||.||+++++..++..++++|. ....+|+
T Consensus 21 ~~~~~~l~eLi~Na~dA---~a~~I~i~~~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~~~G~ 94 (312)
T TIGR00585 21 ERPASVVKELVENSLDA---GATRIDVEIEE---GGLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIETLGF 94 (312)
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhcccccCc
Confidence 45667999999999999 89998888864 23446999999999999999998886666654 2356899
Q ss_pred ccccccccccccCCEEEEEeee
Q 007030 180 YGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
.|.|+ ++++...+++|.|++
T Consensus 95 rG~al--~si~~~s~~~i~S~~ 114 (312)
T TIGR00585 95 RGEAL--ASISSVSRLTITTKT 114 (312)
T ss_pred cchHH--HHHHhhCcEEEEEee
Confidence 99987 344455589999998
No 11
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.32 E-value=9.6e-11 Score=134.92 Aligned_cols=96 Identities=27% Similarity=0.321 Sum_probs=72.1
Q ss_pred cccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 007030 98 FLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (621)
Q Consensus 98 fLhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (621)
.|||+.- ..|+|||.||.||... ....+.|.+..+. ....|+|.|||.||+.+++.+.+
T Consensus 21 slYs~~~------iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~L~I~DnGiGMt~edl~~~L 92 (701)
T PTZ00272 21 TFYSNKE------IFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDK--ENKTLTVEDNGIGMTKADLVNNL 92 (701)
T ss_pred cccCCcc------HhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcC--CCCEEEEEECCCCCCHHHHHHHh
Confidence 3677754 4699999999999731 1234567666532 35689999999999999997654
Q ss_pred -hccccccc----------CCCCcccccccccccccccCCEEEEEeeeC
Q 007030 165 -SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 165 -~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
++|.|..+ +...||+||+||. ++|-.+..+.|.||..
T Consensus 93 gtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfy-S~Fmvad~V~V~Srs~ 140 (701)
T PTZ00272 93 GTIARSGTKAFMEALEAGGDMSMIGQFGVGFY-SAYLVADRVTVTSKNN 140 (701)
T ss_pred hhhhhcchHHHHHHhhccCCccccCCCCcceE-EEEEeccEEEEEEecC
Confidence 57776432 2458999999996 5566999999999975
No 12
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.4e-08 Score=110.44 Aligned_cols=94 Identities=27% Similarity=0.380 Sum_probs=75.3
Q ss_pred HHHHHHhhccchhhhh-CC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCcccccccc
Q 007030 110 FGAIAELLDNAVDEVQ-NG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYGNGF 184 (621)
Q Consensus 110 f~AIaELVDNSiDA~~-~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~--~~~~IGrfGiGl 184 (621)
..+|.|||+||+||+. +| -..|.|.+.... .+...+.|+|||.||+++.+.++|. +=+++|. .....|++|+|.
T Consensus 38 ~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~-~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqGiGi 116 (538)
T COG1389 38 TTTVHELVTNSLDACEEAGILPDIKVEIERIG-KDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQGIGI 116 (538)
T ss_pred HHHHHHHHhcchhhHHhcCCCCceEEEEEecC-CceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhccccccccH
Confidence 4589999999999974 23 355777777643 4678899999999999999999986 4444554 678899999998
Q ss_pred cc----cccccCCEEEEEeeeCCC
Q 007030 185 KT----STMRLGADVIVFSRATHE 204 (621)
Q Consensus 185 Ks----As~~lG~~v~V~Sr~~~~ 204 (621)
+. |-|..|+.+.|.|++.++
T Consensus 117 s~avLysQmTtGkPv~V~s~T~~s 140 (538)
T COG1389 117 SAAVLYSQMTTGKPVRVISSTGDS 140 (538)
T ss_pred HHHHHHHHhcCCCceEEEecCCCC
Confidence 75 457889999999999753
No 13
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.68 E-value=2.2e-08 Score=111.25 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=72.9
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hccccccc------CCCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK------ANKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K~------~~~~IGr 179 (621)
..|..||.|||.||+|| ++|.|.|.+.. +|-..+.|.|||.||-++++.-.. +|-+|.-. ...++|.
T Consensus 26 ~RP~NAlKEliENSLDA---~ST~I~V~vk~---GGLKLlQisDnG~GI~reDl~ilCeRftTSKL~kFEDL~~lsTyGF 99 (694)
T KOG1979|consen 26 QRPVNALKELIENSLDA---NSTSIDVLVKD---GGLKLLQISDNGSGIRREDLPILCERFTTSKLTKFEDLFSLSTYGF 99 (694)
T ss_pred hchHHHHHHHHhccccC---CCceEEEEEec---CCeEEEEEecCCCccchhhhHHHHHHhhhhhcchhHHHHhhhhcCc
Confidence 45778999999999999 99988887754 567789999999999999998754 57766533 3456777
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~~ 204 (621)
.|-. .|+++...+++|.||+.++
T Consensus 100 RGEA--LASiShVA~VtV~TK~~~~ 122 (694)
T KOG1979|consen 100 RGEA--LASISHVAHVTVTTKTAEG 122 (694)
T ss_pred cHHH--HhhhhheeEEEEEEeecCc
Confidence 7755 5899999999999999764
No 14
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.55 E-value=1.1e-07 Score=105.84 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=77.1
Q ss_pred cccccHHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCcccc
Q 007030 104 TSHKWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQY 180 (621)
Q Consensus 104 Tsh~~~f~AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrf 180 (621)
+.|.++ ..+++|||||+||.... .+.|.+.+.. .++...|+|.|||+||+++....+|..|+|+|. ..+++|.|
T Consensus 424 ~~~~li-tIlGNLidNA~eA~~~~~~~k~I~l~i~~--~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~~~rGiGL~ 500 (537)
T COG3290 424 QPHDLV-TILGNLIDNALEALLAPEENKEIELSLSD--RGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNTGGRGIGLY 500 (537)
T ss_pred ChHHHH-HHHHHHHHHHHHHhhccCCCcEEEEEEEe--cCCEEEEEEeCCCCCCChHHHHHHHhcCccccCCCCCchhHH
Confidence 344555 69999999999997632 2445555544 567889999999999999999999999999998 67777777
Q ss_pred cccccccccccCCEEEEEeeeCC
Q 007030 181 GNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 181 GiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
- .|...-++|+.++|.+....
T Consensus 501 L--vkq~V~~~~G~I~~~s~~~~ 521 (537)
T COG3290 501 L--VKQLVERLGGSIEVESEKGQ 521 (537)
T ss_pred H--HHHHHHHcCceEEEeeCCCC
Confidence 7 57888999999999998643
No 15
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.54 E-value=8.5e-08 Score=110.20 Aligned_cols=111 Identities=21% Similarity=0.217 Sum_probs=85.2
Q ss_pred cCcccccccccccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH--
Q 007030 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-- 162 (621)
Q Consensus 86 ~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~-- 162 (621)
...+||++.-|. .|--+|-..-+..++.||||||+|+..++ |+.|.|.+..+ ..|+|.|||.||+.+....
T Consensus 16 L~~lE~VrkRP~-mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~d-----g~I~V~DnGrGIP~~~~~~~~ 89 (631)
T PRK05559 16 LEGLEPVRKRPG-MYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHAD-----GSVSVRDNGRGIPVGIHPEEG 89 (631)
T ss_pred ccchHHHhcCCC-ceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCC-----CcEEEEEcCCCCCcccccccC
Confidence 567888888885 23344455778889999999999987664 89999988642 3899999999999998877
Q ss_pred ------hhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 163 ------CMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 163 ------~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+|. +-.++|.+ ....|+.|+|++ +.-.+...++|.|++.+
T Consensus 90 ~~~~E~v~t~lhagsKf~~~~yk~SgGl~GvGls-~vNalS~~l~V~s~r~g 140 (631)
T PRK05559 90 KSGVEVILTKLHAGGKFSNKAYKFSGGLHGVGVS-VVNALSSRLEVEVKRDG 140 (631)
T ss_pred CcchheeeeeccccCccCCccccccCcccccchh-hhhhheeeEEEEEEeCC
Confidence 665 34444442 357899999995 55668889999999753
No 16
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=98.52 E-value=1.2e-07 Score=107.44 Aligned_cols=88 Identities=23% Similarity=0.339 Sum_probs=65.9
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHh-hhccccccc------CCCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKC-MSLGYSTKK------ANKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~-~~~G~S~K~------~~~~IGr 179 (621)
..+.+|+.||||||+|| |||.|.|.+.. .|...|+|.|||+|+++.+..-+ +..-+|.-. ...++|.
T Consensus 19 ~sl~sAVKELvENSiDA---GAT~I~I~~kd---yG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~f~Dl~~l~T~GF 92 (672)
T KOG1978|consen 19 TSLVSAVKELVENSIDA---GATAIDIKVKD---YGSDSIEVSDNGSGISATDFEGLALKHTTSKIVSFADLAVLFTLGF 92 (672)
T ss_pred ccHHHHHHHHHhcCccc---CCceeeEecCC---CCcceEEEecCCCCCCccchhhhhhhhhhhcccchhhhhhhhhhhh
Confidence 34557999999999999 99999998864 27789999999999999999753 333333222 3567888
Q ss_pred ccccccccccccCCEEEEEeeeC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
.|-.+ ++..--++++|.|++.
T Consensus 93 RGEAL--SsLCa~~dv~I~Trt~ 113 (672)
T KOG1978|consen 93 RGEAL--SSLCALGDVMISTRSH 113 (672)
T ss_pred HHHHH--HhhhhccceEEEEeec
Confidence 88766 3444446788888875
No 17
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.48 E-value=2.1e-07 Score=82.01 Aligned_cols=92 Identities=24% Similarity=0.353 Sum_probs=70.3
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT-- 186 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs-- 186 (621)
...+|.||++||+++...+ ..|.|.+... ++...|+|.|||.||+++++.+++..+++.+......+.+|+||..
T Consensus 6 l~~il~~ll~Na~~~~~~~-~~I~i~~~~~--~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~~~~~g~GlGL~~~~ 82 (111)
T PF02518_consen 6 LRQILSELLDNAIKHSPEG-GKIDITIEED--DDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSETSISGHGLGLYIVK 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SEEEEEEEEE--TTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSSGGSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-CEEEEEEEEe--cCeEEEEEEeccccccccccccchhhcccccccccccCCCChHHHHHH
Confidence 3468999999999995432 5677777763 3678999999999999999999998666555444555668888753
Q ss_pred -cccccCCEEEEEeeeCC
Q 007030 187 -STMRLGADVIVFSRATH 203 (621)
Q Consensus 187 -As~~lG~~v~V~Sr~~~ 203 (621)
.+-.++.++.+.+...+
T Consensus 83 ~~~~~~~g~l~~~~~~~~ 100 (111)
T PF02518_consen 83 QIAERHGGELTIESSEGG 100 (111)
T ss_dssp HHHHHTTEEEEEEEETTT
T ss_pred HHHHHCCCEEEEEEcCCC
Confidence 35568888999888643
No 18
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.3e-07 Score=102.67 Aligned_cols=90 Identities=26% Similarity=0.430 Sum_probs=69.7
Q ss_pred HHHHhhccchhhhh--------C---CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-------
Q 007030 112 AIAELLDNAVDEVQ--------N---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK------- 172 (621)
Q Consensus 112 AIaELVDNSiDA~~--------~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~------- 172 (621)
-+.|||.||-||.. + ......|.+..+ .....|+|.|.|+||+.++|.+.+. +..|..+
T Consensus 61 FlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~n--k~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealk 138 (656)
T KOG0019|consen 61 FLRELISNASDALEKLRYLELKGDEKALPELEIRIITN--KDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALK 138 (656)
T ss_pred HHHhhhccccchHHHHHHHhhcCccccccceeEEeccC--CCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHH
Confidence 59999999999972 0 134566777654 3567899999999999999988764 5555432
Q ss_pred ----CCCCcccccccccccccccCCEEEEEeeeCCC
Q 007030 173 ----ANKTIGQYGNGFKTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 173 ----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~~ 204 (621)
+...||+||+||.+|.+ .+.+|.|+||...+
T Consensus 139 ea~ad~~~IGQFGvGFYSayl-VAdkV~V~tk~~~~ 173 (656)
T KOG0019|consen 139 EAEAESNLIGQFGVGFYSAFM-VADRVVVTTRHPAD 173 (656)
T ss_pred hcccchhhhhhcccchhhhhh-hhheeEEeeccCCC
Confidence 34689999999987654 89999999998754
No 19
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.38 E-value=5.9e-07 Score=103.83 Aligned_cols=94 Identities=24% Similarity=0.339 Sum_probs=69.1
Q ss_pred cHHHHHHHhhccchhhhhCCCc--eEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCcccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGAT--FVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYGN 182 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt--~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~--~~~~IGrfGi 182 (621)
+...+|.|||+||+||...+.. .|.|.+.. .+....|.|.|||+||+++++.++|. |.+++|. .....|..|+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~--~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~~srG~rG~ 123 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEE--VGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHAREQSRGQQGI 123 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEE--CCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccccCCCCCce
Confidence 4557999999999999322111 46676654 23345799999999999999999996 6655553 2356789999
Q ss_pred cccccc----cccCCEEEEEeeeCC
Q 007030 183 GFKTST----MRLGADVIVFSRATH 203 (621)
Q Consensus 183 GlKsAs----~~lG~~v~V~Sr~~~ 203 (621)
|+.++. +..|+.+.|.|+..+
T Consensus 124 GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 124 GISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred ehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 987542 345889999999854
No 20
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=98.33 E-value=6.7e-07 Score=103.00 Aligned_cols=121 Identities=23% Similarity=0.299 Sum_probs=81.8
Q ss_pred ccccCccCccccCCCcCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEE
Q 007030 71 AGTYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVF 148 (621)
Q Consensus 71 ag~~~~~~~~~~~~~~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I 148 (621)
+.+|+.+ ...-...+||++.-|. |+-| |-..-..-.+.||||||+|...+| |+.|.|.+.. + ..|+|
T Consensus 5 ~~~Y~~~----~i~~L~~lE~Vr~RPgMYiGs--~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~---~--g~I~V 73 (638)
T PRK05644 5 AQEYDAS----QIQVLEGLEAVRKRPGMYIGS--TGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINE---D--GSITV 73 (638)
T ss_pred cCCCCHH----HCeEecchHHHhcCCCceECC--CChhhHHhhhHHhhhcccccccCCCCCEEEEEEeC---C--CcEEE
Confidence 3456652 2233567888887774 4433 333444458899999999955448 9999998864 1 28999
Q ss_pred EECCCCCCHHHH--------HHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 149 IDDGGGMDPESL--------RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 149 ~DNG~GMs~e~l--------~~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.|||.||+.+.- +.+|. +-.+.|.+ ....|+.|.|++ +.-.+...++|.|++.+
T Consensus 74 ~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~kfd~~~yk~s~G~~G~Gls-~vnalS~~~~v~t~r~g 140 (638)
T PRK05644 74 TDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGKFGGGGYKVSGGLHGVGVS-VVNALSTWLEVEVKRDG 140 (638)
T ss_pred EEeCccccCCccCCCCCCchHHheeeecccCccCCCcccccCCccccchh-hhhheeceEEEEEEeCC
Confidence 999999998632 22343 22333432 247899999996 45668888999999753
No 21
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.32 E-value=9.6e-07 Score=99.53 Aligned_cols=95 Identities=25% Similarity=0.423 Sum_probs=67.7
Q ss_pred HHHHHHhhccchhhhhCCC--ceEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-cccccccC--CCCccccccc
Q 007030 110 FGAIAELLDNAVDEVQNGA--TFVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGNG 183 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~gA--t~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~IGrfGiG 183 (621)
..+|.|||+||+||...+. ..|.|.+.... .++...|.|.|||.||+++++.++|. |.+++|.. ....|.+|+|
T Consensus 38 ~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~~~s~G~~GLG 117 (535)
T PRK04184 38 YTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNLRQSRGQQGIG 117 (535)
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccccccccCCCCCCcc
Confidence 4689999999999953211 25677665421 23456799999999999999999886 54555542 4567999999
Q ss_pred ccccc----cccCCEEEEEeeeCCC
Q 007030 184 FKTST----MRLGADVIVFSRATHE 204 (621)
Q Consensus 184 lKsAs----~~lG~~v~V~Sr~~~~ 204 (621)
+..+. +..|..+.|.|+..++
T Consensus 118 Lsiv~~isq~~~G~~I~V~S~~~~g 142 (535)
T PRK04184 118 ISAAVLYAQMTTGKPVRVISSTGGS 142 (535)
T ss_pred hHHHHHHHHHhcCCcEEEEEecCCC
Confidence 97542 3346679999998543
No 22
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.30 E-value=7.5e-07 Score=102.40 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=80.6
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 007030 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (621)
Q Consensus 86 ~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~---- 159 (621)
...+|+++.-| ||+-|.. |..++.||||||+|...+ +|+.|.|.+.. + ..|+|.|||.||+.+.
T Consensus 12 L~gle~VRkRPgMYigs~~-----~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~----d-~~I~V~DnGrGIp~~~h~~~ 81 (625)
T TIGR01055 12 LDGLEPVRKRPGMYTDTTR-----PNHLVQEVIDNSVDEALAGFASIIMVILHQ----D-QSIEVFDNGRGMPVDIHPKE 81 (625)
T ss_pred ecccHHhhcCCCCeeCCCC-----cceeehhhhhcccchhhcCCCCEEEEEEeC----C-CeEEEEecCCccCccccccc
Confidence 56778887776 5564433 345899999999995555 59999998864 2 5899999999999988
Q ss_pred ----HHHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 160 ----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 160 ----l~~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++-+|+ +-.++|.+ ....|+.|.|++ +.-.+...++|.|++.+
T Consensus 82 g~~~~e~v~t~lhagsK~~~~~~~~SgG~~GvGls-~vnalS~~l~v~~~r~g 133 (625)
T TIGR01055 82 GVSAVEVILTTLHAGGKFSNKNYHFSGGLHGVGIS-VVNALSKRVKIKVYRQG 133 (625)
T ss_pred CCcHHHHhhhcccccCCCCCCcceecCCCcchhHH-HHHHhcCeEEEEEEECC
Confidence 777773 44444442 357999999995 56668899999999754
No 23
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.30 E-value=1.3e-06 Score=97.40 Aligned_cols=95 Identities=24% Similarity=0.282 Sum_probs=68.0
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCcccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYGN 182 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~--~~~~IGrfGi 182 (621)
....++.|||+||+||..... ..|.|.+.... ++...|+|.|||.||+++++.++|. |.+++|. .....|..|+
T Consensus 28 ~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g-~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~~~s~G~~Gl 106 (488)
T TIGR01052 28 SLTTVIHELVTNSLDACEEAGILPDIKVEIEKIG-KDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRIIQSRGQQGI 106 (488)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECC-CceEEEEEEECCCCCCHHHHHhhhhhccccCccccccccCCCccE
Confidence 445699999999999953211 25677665421 1234799999999999999999886 5666664 3456789999
Q ss_pred ccccc----ccccCCEEEEEeeeCC
Q 007030 183 GFKTS----TMRLGADVIVFSRATH 203 (621)
Q Consensus 183 GlKsA----s~~lG~~v~V~Sr~~~ 203 (621)
|+..+ -+..|..+.|.|++.+
T Consensus 107 GLs~~~~isq~~~G~~i~V~S~~~g 131 (488)
T TIGR01052 107 GISGAVLYSQMTTGKPVKVISSTGG 131 (488)
T ss_pred ehhHHHHHHHHcCCceEEEEEecCC
Confidence 98643 2344566999999864
No 24
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-06 Score=95.99 Aligned_cols=98 Identities=28% Similarity=0.361 Sum_probs=70.9
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (621)
||+|.- .-+.|||.||-||.. .....++|.|..+. ....+.|.|.|.||+.++|.+.+.
T Consensus 92 LY~NKe------IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dk--e~klLhi~DtGiGMT~edLi~NLG 163 (785)
T KOG0020|consen 92 LYRNKE------IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADK--EKKLLHITDTGIGMTREDLIKNLG 163 (785)
T ss_pred HhhhhH------HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeech--hhCeeeEecccCCccHHHHHHhhh
Confidence 555544 359999999999972 11234566666532 467899999999999999987653
Q ss_pred -ccccccc---------------CCCCcccccccccccccccCCEEEEEeeeCCCC
Q 007030 166 -LGYSTKK---------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHES 205 (621)
Q Consensus 166 -~G~S~K~---------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~~~ 205 (621)
+..|... ...-||+||+||.+ +|-.+..+.|.|+.+++.
T Consensus 164 TIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYs-AfLVAD~vvVtsKhNdD~ 218 (785)
T KOG0020|consen 164 TIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYS-AFLVADRVVVTSKHNDDS 218 (785)
T ss_pred hhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhh-hhhhcceEEEEeccCCcc
Confidence 4444321 12469999999975 466899999999988764
No 25
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.11 E-value=5.4e-06 Score=95.38 Aligned_cols=92 Identities=21% Similarity=0.297 Sum_probs=66.1
Q ss_pred HHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccC--CCCccccccccc
Q 007030 111 GAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA--NKTIGQYGNGFK 185 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~--~~~IGrfGiGlK 185 (621)
.++.|||+||+||..... ..|.|.+... ..+...|.|.|||.||+++++.++|. |-+++|.. ....|..|+|+.
T Consensus 39 ~VVkELVeNAIDA~~~~g~~p~I~V~I~~~-g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~~qS~G~rG~GLa 117 (659)
T PRK14867 39 TIIHELVTNSLDACEEAEILPDIKVEIEKL-GSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRLIQSRGQQGIGAA 117 (659)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEEEC-CCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccceeccCCCCcccHH
Confidence 689999999999953211 2577777542 12234699999999999999999997 34444432 367788999986
Q ss_pred ccc----cccCCEEEEEeeeCC
Q 007030 186 TST----MRLGADVIVFSRATH 203 (621)
Q Consensus 186 sAs----~~lG~~v~V~Sr~~~ 203 (621)
++. +..|+.+.|.|+..+
T Consensus 118 ~a~~vsql~~G~pI~I~S~~g~ 139 (659)
T PRK14867 118 GVLLFSQITTGKPLKITTSTGD 139 (659)
T ss_pred HHHHHHHHhcCCcEEEEEEcCC
Confidence 543 345888999998753
No 26
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=98.06 E-value=5.3e-06 Score=96.04 Aligned_cols=110 Identities=21% Similarity=0.232 Sum_probs=74.4
Q ss_pred cCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHH---
Q 007030 86 QGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--- 160 (621)
Q Consensus 86 ~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l--- 160 (621)
...++|++.-|. |+-|... .-..-++.||||||+|...++ |+.|.|.+.. + ..|+|.|||.||+.+.-
T Consensus 9 L~~lE~vr~RP~mYiGs~~~--~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~ 81 (654)
T TIGR01059 9 LEGLEAVRKRPGMYIGSTGE--TGLHHLVYEVVDNSIDEAMAGYCDTINVTIND---D--GSVTVEDNGRGIPVDIHPEE 81 (654)
T ss_pred ecchHHHhcCCCceeCCCCc--chHHhhhHHhhhccccccccCCCCEEEEEEeC---C--CcEEEEEeCCCcCccccCcC
Confidence 345666666664 3433222 334458999999999954447 9999998864 1 25999999999998621
Q ss_pred -----HHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 161 -----RKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 161 -----~~~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+.+|. +..+.|. -....|+.|.|++ +.-.++..++|.|++.+
T Consensus 82 ki~~~e~i~~~l~ag~kf~~~~~k~s~G~~G~gl~-~inalS~~l~v~~~~~g 133 (654)
T TIGR01059 82 GISAVEVVLTVLHAGGKFDKDSYKVSGGLHGVGVS-VVNALSEWLEVTVFRDG 133 (654)
T ss_pred CCCchHHheeeecccCccCCCcceecCCccchhHH-HHHHhcCeEEEEEEECC
Confidence 22333 2233333 2357899999996 55668888999999753
No 27
>PRK10364 sensor protein ZraS; Provisional
Probab=98.01 E-value=9.5e-06 Score=88.35 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=68.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
....++.+|++||+++.. ....|.|.+... ++...|.|.|||.||+++.+.++|..+++.|....++|.+. .|..
T Consensus 348 ~l~~il~NLl~NA~k~~~-~~~~I~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~g~GlGL~i--v~~~ 422 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIG-QHGVISVTASES--GAGVKISVTDSGKGIAADQLEAIFTPYFTTKAEGTGLGLAV--VHNI 422 (457)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCeEEEEEEEe--CCeEEEEEEECCCCCCHHHHHHHhCccccCCCCCCcccHHH--HHHH
Confidence 455789999999999843 245677777653 34578999999999999999999998888775444444444 3555
Q ss_pred ccccCCEEEEEeeeCC
Q 007030 188 TMRLGADVIVFSRATH 203 (621)
Q Consensus 188 s~~lG~~v~V~Sr~~~ 203 (621)
.-.+|+++.+.+...+
T Consensus 423 v~~~gG~i~i~s~~~~ 438 (457)
T PRK10364 423 VEQHGGTIQVASQEGK 438 (457)
T ss_pred HHHCCCEEEEEeCCCC
Confidence 6779999999887643
No 28
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.99 E-value=8.6e-06 Score=95.26 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=75.4
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHH---
Q 007030 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--- 160 (621)
Q Consensus 86 ~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l--- 160 (621)
...++|++.-| +|+-|.... .-..-.+-||||||+|...+| |+.|.|.+.. ...|+|.|||.||+.+.-
T Consensus 15 L~gle~VRkRPgMYIGst~~~-~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~-----dgsIsV~DnGrGIPvd~h~~~ 88 (756)
T PRK14939 15 LKGLDAVRKRPGMYIGDTDDG-TGLHHMVYEVVDNAIDEALAGHCDDITVTIHA-----DGSVSVSDNGRGIPTDIHPEE 88 (756)
T ss_pred ecccHHHhcCCCCeeCCCCCC-cchhhhhhHhhcccccccccCCCCEEEEEEcC-----CCeEEEEEcCCcccCCccccc
Confidence 45677777766 455433320 233357899999999955557 9999998864 138999999999998711
Q ss_pred -----HHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 161 -----RKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 161 -----~~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+-.|. +-.++|.+ .-..|+.|+|++ +.-.+...++|.|++.+
T Consensus 89 g~~~~Elvlt~lhAggKfd~~~ykvSgGlhGvG~s-vvNAlS~~l~v~v~r~g 140 (756)
T PRK14939 89 GVSAAEVIMTVLHAGGKFDQNSYKVSGGLHGVGVS-VVNALSEWLELTIRRDG 140 (756)
T ss_pred CCchhhheeeeecccCCCCCCcccccCCccCccce-EeehccCeEEEEEEeCC
Confidence 11222 33333431 236899999985 56678999999999754
No 29
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=97.95 E-value=6.9e-06 Score=94.13 Aligned_cols=86 Identities=24% Similarity=0.246 Sum_probs=62.8
Q ss_pred HHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC----CCCc
Q 007030 112 AIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----NKTI 177 (621)
Q Consensus 112 AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~----~~~I 177 (621)
++.||||||+||..++ |+.|.|.+.. + ..|+|.|||.||+.+... .+|. +-.+.|.+ ....
T Consensus 5 ~v~ElvdNAiD~~~~g~at~I~V~i~~---~--g~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd~~~~k~s~ 79 (594)
T smart00433 5 LVDEIVDNAADEALAGYMDTIKVTIDK---D--NSISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFDDDAYKVSG 79 (594)
T ss_pred EEeeehhcccchhccCCCCEEEEEEeC---C--CeEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCCCCCccccC
Confidence 5789999999996544 9999998864 1 289999999999964432 2233 22223332 3478
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 007030 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 178 GrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
|+.|.|++ +.-.+...++|.|++.+
T Consensus 80 G~~G~Gls-~vnalS~~l~v~~~~~g 104 (594)
T smart00433 80 GLHGVGAS-VVNALSTEFEVEVARDG 104 (594)
T ss_pred CcccchHH-HHHHhcCceEEEEEeCC
Confidence 99999995 56668899999999863
No 30
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.80 E-value=5.5e-05 Score=83.06 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=67.2
Q ss_pred HHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
...++.+|++||+++... ....|.|.+.. .++...|+|.|||.||+++++.++|..++++|....++|.+. .|..
T Consensus 434 l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~--~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~g~GlGL~i--v~~i 509 (542)
T PRK11086 434 LITILGNLIENALEAVGGEEGGEISVSLHY--RNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGSNRGVGLYL--VKQS 509 (542)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCCCCcCcHHH--HHHH
Confidence 446899999999998532 23456676655 345568999999999999999999998888775544444444 3455
Q ss_pred ccccCCEEEEEeeeC
Q 007030 188 TMRLGADVIVFSRAT 202 (621)
Q Consensus 188 s~~lG~~v~V~Sr~~ 202 (621)
.-..|+.+.|.|...
T Consensus 510 v~~~~G~i~v~s~~~ 524 (542)
T PRK11086 510 VENLGGSIAVESEPG 524 (542)
T ss_pred HHHcCCEEEEEeCCC
Confidence 667999999998754
No 31
>PRK10604 sensor protein RstB; Provisional
Probab=97.80 E-value=4.1e-05 Score=83.42 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=67.1
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCcccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGF-- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGl-- 184 (621)
..-.++.+||+||+.+ +...|.|.+... ++...|.|.|||.||+++++.++|...+.... ....-|-+|+|+
T Consensus 319 ~l~~vl~NLl~NAik~---~~~~I~I~~~~~--~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~~~~~~g~GLGL~i 393 (433)
T PRK10604 319 LMERVLDNLLNNALRY---AHSRVRVSLLLD--GNQACLIVEDDGPGIPPEERERVFEPFVRLDPSRDRATGGCGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHHh---CCCeEEEEEEEE--CCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCCCCCCCCccchHHH
Confidence 3456899999999998 456677777653 34568999999999999999999985554322 122334568886
Q ss_pred -cccccccCCEEEEEeeeCC
Q 007030 185 -KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+++.+.+...+
T Consensus 394 vk~i~~~~gG~i~v~s~~~~ 413 (433)
T PRK10604 394 VHSIALAMGGSVNCDESELG 413 (433)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 4456779999999988643
No 32
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.73 E-value=6.6e-05 Score=80.30 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=63.8
Q ss_pred HHHHHHhhccchhhhhCCC---ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc---CCCCccccccc
Q 007030 110 FGAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK---ANKTIGQYGNG 183 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~gA---t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~---~~~~IGrfGiG 183 (621)
-.++.+|+.||+++...+. ..|.|.... .++...|+|.|||.||+++...++|...++.|. ...++|.+-
T Consensus 389 ~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~--~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~G~GlGL~i-- 464 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNIKGWKRRELSITTAL--NGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGSRKHIGMGLSV-- 464 (494)
T ss_pred HHHHHHHHHHHHHHhhccCCCcceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCCCCCCcccHHH--
Confidence 3589999999999954331 234444433 446678999999999999999999986665553 223344333
Q ss_pred ccccccccCCEEEEEeeeCCC
Q 007030 184 FKTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 184 lKsAs~~lG~~v~V~Sr~~~~ 204 (621)
.|...-.+|+++.|.|...++
T Consensus 465 ~~~iv~~~gG~i~~~s~~~~G 485 (494)
T TIGR02938 465 AQEIVADHGGIIDLDDDYSEG 485 (494)
T ss_pred HHHHHHHcCCEEEEEECCCCC
Confidence 244556799999999887543
No 33
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.68 E-value=6.2e-05 Score=82.41 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=66.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~-~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
...++.+|++||+.+... ...|.|.+... ++. ..|.|.|||.||+++.+.+.+..+++.+....++|.++ .+..
T Consensus 501 l~~~~~nli~na~~~~~~-~~~i~v~~~~~--~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~~g~glGL~~--~~~~ 575 (607)
T PRK11360 501 LKQVLLNILINAVQAISA-RGKIRIRTWQY--SDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKAKGTGLGLAL--SQRI 575 (607)
T ss_pred HHHHHHHHHHHHHHHhcC-CCeEEEEEEEc--CCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCCCCCchhHHH--HHHH
Confidence 446899999999998532 33566666542 233 78999999999999999999987776665555666666 3455
Q ss_pred ccccCCEEEEEeeeC
Q 007030 188 TMRLGADVIVFSRAT 202 (621)
Q Consensus 188 s~~lG~~v~V~Sr~~ 202 (621)
...+|+++.+.|...
T Consensus 576 ~~~~~G~i~~~s~~~ 590 (607)
T PRK11360 576 INAHGGDIEVESEPG 590 (607)
T ss_pred HHHcCCEEEEEEcCC
Confidence 567999999998864
No 34
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.67 E-value=9.1e-05 Score=82.20 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=66.3
Q ss_pred HHHHHHhhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc--
Q 007030 110 FGAIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl-- 184 (621)
-.++.+|++||+++... +...|.|.+.. .++...|.|.|||.||++++..++|..|+++|... .|..|+|+
T Consensus 434 ~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~--~~g~GlGL~i 509 (545)
T PRK15053 434 AAIVGNLLDNAFEASLRSDEGNKIVELFLSD--EGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE--PGEHGIGLYL 509 (545)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCceEEEEEEE--CCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC--CCCceeCHHH
Confidence 35799999999999531 34567776654 34556799999999999999999999888876421 23346665
Q ss_pred -cccccccCCEEEEEeeeCC
Q 007030 185 -KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-..|+.+.|.|....
T Consensus 510 vk~iv~~~~G~i~v~s~~~~ 529 (545)
T PRK15053 510 IASYVTRCGGVITLEDNDPC 529 (545)
T ss_pred HHHHHHHcCCEEEEEECCCC
Confidence 4445678999999888643
No 35
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.65 E-value=0.0001 Score=79.29 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=65.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK--- 185 (621)
...+|.+||+||+.+... ...|.|.+... .++...|+|.|||.||+++++.++|...++.+. ...-+-+|+|+.
T Consensus 273 l~qvl~NLl~NAik~~~~-~~~I~i~~~~~-~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~-~~~~~G~GLGL~i~~ 349 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPE-GGTITLSMLHR-TTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR-DEGTEGYGIGLSVCR 349 (380)
T ss_pred HHHHHHHHHHHHHhcCCC-CceEEEEEEec-CCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC-CCCCCcccccHHHHH
Confidence 446999999999998322 23466655331 234467999999999999999999986655443 222334677763
Q ss_pred ccccccCCEEEEEeeeCCC
Q 007030 186 TSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~~ 204 (621)
...-.+|+.+.|.|...++
T Consensus 350 ~iv~~~gG~i~v~s~~~~G 368 (380)
T PRK09303 350 RIVRVHYGQIWVDSEPGQG 368 (380)
T ss_pred HHHHHcCCEEEEEecCCCc
Confidence 3456799999999987543
No 36
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.64 E-value=0.00015 Score=59.82 Aligned_cols=88 Identities=18% Similarity=0.240 Sum_probs=59.4
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc---c
Q 007030 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT---S 187 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs---A 187 (621)
.++.||++||+++.......|.|.+.. .++...|.|.|+|.||++..+.+.+..... .......+..|+|++. .
T Consensus 3 ~~~~~ll~Na~~~~~~~~~~v~i~~~~--~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~g~gl~~~~~~ 79 (103)
T cd00075 3 QVLLNLLSNAIKHTPEGGGRITISVER--DGDHLEIRVEDNGPGIPEEDLERIFERFSD-GSRSRKGGGTGLGLSIVKKL 79 (103)
T ss_pred HHHHHHHHHHHHhCcCCCCeEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHHhhhhhc-CCCCCCCCccccCHHHHHHH
Confidence 489999999999932212456666554 334578999999999999999887653211 1122344567788753 2
Q ss_pred ccccCCEEEEEeee
Q 007030 188 TMRLGADVIVFSRA 201 (621)
Q Consensus 188 s~~lG~~v~V~Sr~ 201 (621)
..++|..+.+.+..
T Consensus 80 ~~~~~g~~~~~~~~ 93 (103)
T cd00075 80 VELHGGRIEVESEP 93 (103)
T ss_pred HHHcCCEEEEEeCC
Confidence 44567888887765
No 37
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.64 E-value=9e-05 Score=80.25 Aligned_cols=93 Identities=22% Similarity=0.280 Sum_probs=65.4
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCcccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGF-- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGl-- 184 (621)
....++.+|++||+++.. ....|.|.+.. .++...|+|.|||.||+++.+.++|...++.+. .....|-.|+|+
T Consensus 317 ~l~~vl~NLl~NAik~~~-~~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i 393 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTP-EGTHITVRWQR--VPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAI 393 (430)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCCCCCCCchHHHH
Confidence 455799999999999832 22446666654 234567999999999999999999985554332 122234457776
Q ss_pred -cccccccCCEEEEEeeeCC
Q 007030 185 -KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~~ 203 (621)
|......|+.+.+.|...+
T Consensus 394 vk~iv~~~gG~i~i~s~~~~ 413 (430)
T PRK11006 394 VKHALSHHDSRLEIESEVGK 413 (430)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 3446678999999988643
No 38
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.63 E-value=0.0002 Score=60.13 Aligned_cols=89 Identities=24% Similarity=0.331 Sum_probs=61.8
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc---
Q 007030 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT--- 186 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs--- 186 (621)
..++.|+++||+++... ...|.|.+.. .++...|.|.|+|.||+++.+...+..+++.+......+..|+|++.
T Consensus 7 ~~~~~~l~~n~~~~~~~-~~~v~i~~~~--~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~gl~~~~~ 83 (111)
T smart00387 7 RQVLSNLLDNAIKYTPE-GGRITVTLER--DGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDGRSRKIGGTGLGLSIVKK 83 (111)
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCCCCCCCCcccccHHHHHH
Confidence 35899999999998321 1456776655 33567899999999999999999887655444222334567888753
Q ss_pred cccccCCEEEEEeee
Q 007030 187 STMRLGADVIVFSRA 201 (621)
Q Consensus 187 As~~lG~~v~V~Sr~ 201 (621)
....++.++.+.+..
T Consensus 84 ~~~~~~g~~~~~~~~ 98 (111)
T smart00387 84 LVELHGGEISVESEP 98 (111)
T ss_pred HHHHcCCEEEEEecC
Confidence 345577777776653
No 39
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.60 E-value=0.00013 Score=78.34 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=64.8
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK-- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK-- 185 (621)
...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++.+.+.+...++.+. ....-+-+|+|+.
T Consensus 354 l~~~l~nli~NA~~~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 354 LASALENIVRNALRY---SHTKIEVAFSVD--KDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIV 428 (461)
T ss_pred HHHHHHHHHHHHHHh---CCCcEEEEEEEE--CCEEEEEEEECCCCCCHHHHHHhcCCCccCCcccCCCCCCcchhHHHH
Confidence 445899999999998 456677776653 34567999999999999999999875554332 1122345577754
Q ss_pred -ccccccCCEEEEEeeeCC
Q 007030 186 -TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~~ 203 (621)
.....+|+.+.+.|...+
T Consensus 429 ~~~v~~~~G~l~~~s~~~~ 447 (461)
T PRK09470 429 ENAIQQHRGWVKAEDSPLG 447 (461)
T ss_pred HHHHHHCCCEEEEEECCCC
Confidence 335678999999987654
No 40
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.59 E-value=0.00012 Score=78.42 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCcccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~IGrfGiGl-- 184 (621)
....++.||++||+++.. ....|.|.+.. .++...|+|.|||.||+++.+.+++..+++.+.. ...-+-.|+|+
T Consensus 353 ~l~~~~~nll~Nai~~~~-~~~~I~i~~~~--~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~~~~g~GlGL~i 429 (457)
T TIGR01386 353 MFRRAISNLLSNALRHTP-DGGTITVRIER--RSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSNSGEGTGLGLAI 429 (457)
T ss_pred HHHHHHHHHHHHHHHcCC-CCceEEEEEEe--cCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCCCCCCccccHHH
Confidence 355689999999999821 12467777765 3455689999999999999999998866654331 11223356665
Q ss_pred -cccccccCCEEEEEeeeC
Q 007030 185 -KTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~ 202 (621)
|...-++|+.+.+.+ ..
T Consensus 430 ~~~~~~~~~G~~~~~~-~~ 447 (457)
T TIGR01386 430 VRSIMEAHGGRASAES-PD 447 (457)
T ss_pred HHHHHHHCCCEEEEEe-CC
Confidence 344567899999998 53
No 41
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.58 E-value=0.00015 Score=77.74 Aligned_cols=89 Identities=21% Similarity=0.195 Sum_probs=63.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK--- 185 (621)
...++.+||+||+.+ +...|.|.+... ++...|+|.|||.||+++++.+++..++....... -+-+|+|+.
T Consensus 332 l~~il~NLl~NA~k~---~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~~~~-~~g~GlGL~iv~ 405 (435)
T PRK09467 332 IKRALANLVVNAARY---GNGWIKVSSGTE--GKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDSARG-SSGTGLGLAIVK 405 (435)
T ss_pred HHHHHHHHHHHHHHh---CCCeEEEEEEec--CCEEEEEEEecCCCcCHHHHHHhcCCcccCCCCCC-CCCeehhHHHHH
Confidence 446899999999988 566777777652 34567999999999999999999986654322211 234677763
Q ss_pred ccccccCCEEEEEeeeCC
Q 007030 186 TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~ 203 (621)
...-..|+++.+.+...+
T Consensus 406 ~i~~~~~g~l~i~~~~~~ 423 (435)
T PRK09467 406 RIVDQHNGKVELGNSEEG 423 (435)
T ss_pred HHHHHCCCEEEEEECCCC
Confidence 334567899999887643
No 42
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.55 E-value=0.00014 Score=72.09 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=63.9
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC--CCcccccccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN--KTIGQYGNGF 184 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~--~~IGrfGiGl 184 (621)
.|.-.++.+|++||++|.. ...|.|.+... ++...|.|.|||.||+++.+.++|..+++.+... .++|.+. .
T Consensus 227 ~~l~~vl~nLi~NAi~~~~--~~~i~i~~~~~--~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i--~ 300 (336)
T COG0642 227 ERLRQVLVNLLSNAIKYTP--GGEITISVRQD--DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAI--V 300 (336)
T ss_pred HHHHHHHHHHHHHHhccCC--CCeEEEEEEec--CCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCCCCCCccHHH--H
Confidence 3455699999999999932 46777777652 2246899999999999999999999888777642 2333333 2
Q ss_pred cccccccCCEEEEEeee
Q 007030 185 KTSTMRLGADVIVFSRA 201 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~ 201 (621)
|...-..|+.+.+.|..
T Consensus 301 ~~~~~~~~g~i~~~~~~ 317 (336)
T COG0642 301 KRIVELHGGTISVESEP 317 (336)
T ss_pred HHHHHHcCCEEEEEecC
Confidence 33345667778887776
No 43
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.53 E-value=0.00018 Score=77.24 Aligned_cols=94 Identities=21% Similarity=0.215 Sum_probs=65.8
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc-
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK- 185 (621)
.+...++.+||.||+.+. .....|.|.+.. .++...|+|.|||.||+++++.+.+..+++.+.....-+..|+|+.
T Consensus 367 ~~l~~vl~nli~Na~~~~-~~~~~i~i~~~~--~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~~~~~~GlGL~i 443 (475)
T PRK11100 367 FLLRQALGNLLDNAIDFS-PEGGTITLSAEV--DGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAF 443 (475)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCEEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCCCCCCcchhHHH
Confidence 356679999999999972 124567777765 3456789999999999999999999866544321112223455553
Q ss_pred --ccccccCCEEEEEeeeCC
Q 007030 186 --TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~~ 203 (621)
.-...+|+.+.+.|...+
T Consensus 444 ~~~~~~~~~G~i~i~s~~~~ 463 (475)
T PRK11100 444 VREVARLHGGEVTLRNRPEG 463 (475)
T ss_pred HHHHHHHCCCEEEEEEcCCC
Confidence 345578999999997643
No 44
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.52 E-value=0.00012 Score=76.86 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=65.1
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc-
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK- 185 (621)
.|.-.++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+++..++..+. .-+-.|+|+.
T Consensus 246 ~~l~~il~nLi~NA~k~~~-~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~---~~~g~GlGL~i 319 (356)
T PRK10755 246 TLLRLLLRNLVENAHRYSP-EGSTITIKLSQ--EDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS---RYGGIGLGLSI 319 (356)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC---CCCCcCHHHHH
Confidence 4666799999999998832 23557777654 335568999999999999999999886553221 1233566653
Q ss_pred --ccccccCCEEEEEeeeC
Q 007030 186 --TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+.+.+.|...
T Consensus 320 ~~~i~~~~gg~i~i~s~~~ 338 (356)
T PRK10755 320 VSRITQLHHGQFFLQNRQE 338 (356)
T ss_pred HHHHHHHCCCEEEEEECCC
Confidence 44567899999999875
No 45
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.49 E-value=0.00012 Score=84.51 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=63.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHH-HHHhhhcccccccCCCCcccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPES-LRKCMSLGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~-l~~~~~~G~S~K~~~~~IGrfGiGl--- 184 (621)
...++.+||+||+++.. ....|.|.+.. .++...|+|.|||.||+++. .++.|...++.|... .|+|+
T Consensus 580 l~~vl~nLl~NAik~~~-~~~~I~I~~~~--~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~G-----~GLGL~i~ 651 (679)
T TIGR02916 580 LERVLGHLVQNALEATP-GEGRVAIRVER--ECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGAG-----MGIGVYEC 651 (679)
T ss_pred HHHHHHHHHHHHHHhCC-CCCcEEEEEEE--cCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCCC-----cchhHHHH
Confidence 34589999999999832 23457777765 23567899999999999999 678888777666432 35554
Q ss_pred cccccccCCEEEEEeeeCC
Q 007030 185 KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+++.|.|...+
T Consensus 652 ~~iv~~~gG~i~v~s~~g~ 670 (679)
T TIGR02916 652 RQYVEEIGGRIEVESTPGQ 670 (679)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 3445679999999998643
No 46
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.46 E-value=0.00021 Score=74.34 Aligned_cols=91 Identities=10% Similarity=0.106 Sum_probs=61.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEcc----CCC----CCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIM----KDN----SPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQY 180 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~----~~~----~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrf 180 (621)
...++.+|++||+++.......|.|...... .++ ...|.|.|||.||+++...++|..+++.+....++|.+
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~~g~GlGL~ 317 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLS 317 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCCCCccCCHH
Confidence 4568999999999985323444555442210 001 13689999999999999999998776666443333333
Q ss_pred cccccccccccCCEEEEEeee
Q 007030 181 GNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 181 GiGlKsAs~~lG~~v~V~Sr~ 201 (621)
- .|......|+.+.+.|..
T Consensus 318 i--~~~iv~~~gG~i~~~s~~ 336 (348)
T PRK11073 318 I--ARNLIDQHSGKIEFTSWP 336 (348)
T ss_pred H--HHHHHHHcCCeEEEEecC
Confidence 3 245567789999999875
No 47
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.44 E-value=0.00021 Score=77.20 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=65.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK- 185 (621)
....++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+.+...++.+. .....|-.|+|+.
T Consensus 352 ~l~qvl~nll~NAi~~~~-~~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~~~~~g~GlGL~i 428 (466)
T PRK10549 352 RLMQLFNNLLENSLRYTD-SGGSLHISAEQ--RDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAI 428 (466)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCEEEEEEEE--cCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcCCCCCCCcHHHHH
Confidence 345689999999999832 12356776655 335568999999999999999999875554432 2223445677764
Q ss_pred --ccccccCCEEEEEeeeCC
Q 007030 186 --TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~~ 203 (621)
.....+|+.+.+.+...+
T Consensus 429 v~~i~~~~~G~l~~~s~~~~ 448 (466)
T PRK10549 429 CLNIVEAHNGRIIAAHSPFG 448 (466)
T ss_pred HHHHHHHcCCEEEEEECCCC
Confidence 345678999999998654
No 48
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.40 E-value=0.00037 Score=70.58 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=63.2
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK- 185 (621)
....++.+||.||+++.. ....|.|.+.. .++...|.|.|||.||+++.+.+++...++.+. .....+-.|+|+.
T Consensus 229 ~l~~vl~nll~Nai~~~~-~~~~i~i~~~~--~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~~~~~~~g~glGL~~ 305 (333)
T TIGR02966 229 ELRSAFSNLVSNAIKYTP-EGGTITVRWRR--DGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKSRSRDTGGTGLGLAI 305 (333)
T ss_pred HHHHHHHHHHHHhheeCC-CCCeEEEEEEE--cCCEEEEEEEecCCCCCHHHHhhhccCceecCcccccCCCCCcccHHH
Confidence 345689999999999832 23446666554 334578999999999999999999985553322 1111222366653
Q ss_pred --ccccccCCEEEEEeeeCC
Q 007030 186 --TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~~ 203 (621)
...-.+|+++.+.|....
T Consensus 306 ~~~~~~~~gG~i~~~s~~~~ 325 (333)
T TIGR02966 306 VKHVLSRHHARLEIESELGK 325 (333)
T ss_pred HHHHHHHCCCEEEEEecCCC
Confidence 345568999999998643
No 49
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.36 E-value=0.0003 Score=78.44 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=62.7
Q ss_pred HHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---c
Q 007030 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---T 186 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK---s 186 (621)
..++.+||+||+++ ....+.|.+.. .++...|.|.|||.||+++++.++|..++..+... +-.|+|+. .
T Consensus 380 ~~vl~NLi~NAik~---~~~~i~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---~G~GLGL~Ivk~ 451 (485)
T PRK10815 380 MEVMGNVLDNACKY---CLEFVEISARQ--TDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---PGQGLGLSVARE 451 (485)
T ss_pred HHHHHHHHHHHHHh---cCCcEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---CCcchhHHHHHH
Confidence 46999999999998 34456676654 23456799999999999999999998665433211 12467753 4
Q ss_pred cccccCCEEEEEeeeCC
Q 007030 187 STMRLGADVIVFSRATH 203 (621)
Q Consensus 187 As~~lG~~v~V~Sr~~~ 203 (621)
..-.+|+++.+.|...+
T Consensus 452 iv~~~gG~i~v~s~~~~ 468 (485)
T PRK10815 452 ITEQYEGKISAGDSPLG 468 (485)
T ss_pred HHHHcCCEEEEEECCCC
Confidence 45679999999988754
No 50
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.35 E-value=0.00035 Score=82.66 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=64.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEc-------------cCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNI-------------MKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN 174 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~-------------~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~ 174 (621)
....++.+|++||+++.. ....|.|.+... ..++...|.|.|||.||+++.+.++|...++.+.
T Consensus 560 ~L~qvl~NLl~NAik~~~-~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~-- 636 (828)
T PRK13837 560 ELQQVLMNLCSNAAQAMD-GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA-- 636 (828)
T ss_pred HHHHHHHHHHHHHHHHcc-cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC--
Confidence 345689999999999843 234566766543 1134457999999999999999999986666553
Q ss_pred CCcccccccc---cccccccCCEEEEEeeeC
Q 007030 175 KTIGQYGNGF---KTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 175 ~~IGrfGiGl---KsAs~~lG~~v~V~Sr~~ 202 (621)
+-.|+|+ |...-.+|+++.|.|...
T Consensus 637 ---~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 637 ---GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred ---CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 3346665 345667999999999864
No 51
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.30 E-value=0.00018 Score=82.29 Aligned_cols=84 Identities=26% Similarity=0.348 Sum_probs=63.5
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccccccc
Q 007030 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQYGNG 183 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-------~~~~IGrfGiG 183 (621)
.++.|||-||+|| +|+.|.|.+.. ....+.|.|||.||+.+++...-.--+++|- ....+|..|-.
T Consensus 24 ~~VeElv~NSiDA---~At~V~v~V~~----~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~~ndl~~~~tyGfRGeA 96 (1142)
T KOG1977|consen 24 QCVEELVLNSIDA---EATCVAVRVNM----ETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHSVNDLENPRTYGFRGEA 96 (1142)
T ss_pred HHHHHHHhhcccc---CceEEEEEecC----ceeEEEEEecCCCccHHHHHHHHhhhhhhhceeccccccccccccchhh
Confidence 5899999999999 99998887754 3568999999999999999876543333332 45677877765
Q ss_pred ccccccccCCEEEEEeeeCC
Q 007030 184 FKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 184 lKsAs~~lG~~v~V~Sr~~~ 203 (621)
+ |+.+--..+.|.|++.+
T Consensus 97 L--asIsd~s~l~v~skkk~ 114 (1142)
T KOG1977|consen 97 L--ASISDMSSLVVISKKKN 114 (1142)
T ss_pred h--hhhhhhhhhhhhhhhcC
Confidence 4 55555566778888754
No 52
>PLN03237 DNA topoisomerase 2; Provisional
Probab=97.26 E-value=0.00076 Score=83.34 Aligned_cols=87 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred HHHHHHhhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC----C
Q 007030 110 FGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA----N 174 (621)
Q Consensus 110 f~AIaELVDNSiDA~-~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~----~ 174 (621)
.-.+-|+||||+|.. .+ .++.|.|.|.. ....|+|.|||.||+-+--. -+|+ +-.++|.+ .
T Consensus 79 ~kifdEIldNAvDe~~r~g~~~~I~V~I~~----~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd~~yK 154 (1465)
T PLN03237 79 YKIFDEILVNAADNKQRDPKMDSLRVVIDV----EQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDDNEKK 154 (1465)
T ss_pred hhhHHHHhhhhHhHHhhcCCCCEEEEEEEc----CCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCCCcce
Confidence 358999999999976 32 36888888864 23579999999999865221 1222 22344442 3
Q ss_pred CCcccccccccccccccCCEEEEEeee
Q 007030 175 KTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 175 ~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
..-|+.|+|.| .+-.+...++|.++.
T Consensus 155 vSGGlhGVGas-vvNaLS~~f~Vev~D 180 (1465)
T PLN03237 155 TTGGRNGYGAK-LTNIFSTEFVIETAD 180 (1465)
T ss_pred eeccccccCcc-ccccccCeeEEEEEE
Confidence 46899999986 456688999999984
No 53
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00029 Score=80.31 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=74.0
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 007030 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (621)
Q Consensus 86 ~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~---- 159 (621)
...|++++.-| +|.-|-... .-+.-.+-|.||||+|...+| |+.|.|.+.. ...|+|.|||.||+-+-
T Consensus 14 L~GLEaVRkRPGMYIGst~~~-~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~-----d~sisV~DnGRGIPvdiH~~~ 87 (635)
T COG0187 14 LEGLEAVRKRPGMYIGSTGDG-RGLHHLVWEVVDNSIDEALAGYADRIDVTLHE-----DGSISVEDNGRGIPVDIHPKE 87 (635)
T ss_pred ccCcHHhhcCCCceeccCCCC-CcceeeEeEeeechHhHHhhCcCcEEEEEEcC-----CCeEEEEECCCCCccccCCCC
Confidence 44555555544 343322210 122235779999999988765 8888888864 35799999999999766
Q ss_pred ----HHHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 160 ----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 160 ----l~~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++-+|+ +-...|.+ ...-|+.|+|. ++.-.|...+.|.+++.+
T Consensus 88 ~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~-SVVNALS~~l~v~v~r~g 139 (635)
T COG0187 88 KVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGV-SVVNALSTWLEVEVKRDG 139 (635)
T ss_pred CCCceEEEEEeeccCcccCCCccEeecCCCccce-EEEecccceEEEEEEECC
Confidence 333454 33333432 23568999998 577789999999999864
No 54
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.10 E-value=0.0011 Score=79.62 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=64.4
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~-~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl--- 184 (621)
.-.++.+||.||+.+.. ...|.|.+..... ++...|+|.|+|.||+++++.++|...++.+.....-+--|+|+
T Consensus 566 L~QVL~NLL~NAik~t~--~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~~~~GtGLGLaI~ 643 (894)
T PRK10618 566 LRKILLLLLNYAITTTA--YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDRYGKASGLTFFLC 643 (894)
T ss_pred HHHHHHHHHHHHHHhCC--CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCCCCCCcChhHHHH
Confidence 34689999999999843 2346666654222 23467999999999999999999874444443222222347775
Q ss_pred cccccccCCEEEEEeeeCCC
Q 007030 185 KTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~~~ 204 (621)
|...-.+|+.+.|.|+..+|
T Consensus 644 k~Lve~~GG~I~v~S~~g~G 663 (894)
T PRK10618 644 NQLCRKLGGHLTIKSREGLG 663 (894)
T ss_pred HHHHHHcCCEEEEEECCCCc
Confidence 33456789999999987543
No 55
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.09 E-value=0.00082 Score=78.59 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=65.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK- 185 (621)
..-.++.+||+||+++... ...|.|.+.. .++...|+|.|||.||+++.+.++|..+++.+. ....-+-.|+|+.
T Consensus 597 ~L~~il~NLI~NAik~s~~-~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~~~~g~GLGL~I 673 (703)
T TIGR03785 597 LIAQMLDKLVDNAREFSPE-DGLIEVGLSQ--NKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQDQPHLGLGLYI 673 (703)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCeEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCCCCCCccHHHHH
Confidence 3446899999999998432 3447776655 335567999999999999999999986665443 2222224677763
Q ss_pred --ccccccCCEEEEEeeeC
Q 007030 186 --TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~ 202 (621)
......|+.+.+.+...
T Consensus 674 vr~Iv~~~gG~I~v~s~~~ 692 (703)
T TIGR03785 674 VRLIADFHQGRIQAENRQQ 692 (703)
T ss_pred HHHHHHHcCCEEEEEECCC
Confidence 45677899999988764
No 56
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=97.06 E-value=0.00024 Score=84.06 Aligned_cols=119 Identities=23% Similarity=0.255 Sum_probs=77.6
Q ss_pred ccCccCccccCCCcCccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEE
Q 007030 73 TYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFID 150 (621)
Q Consensus 73 ~~~~~~~~~~~~~~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~D 150 (621)
+|+. .......++|+++.-| +|.-| |.-.-..-.+-|+||||+|...+| ++.|.|.+.. ...|+|.|
T Consensus 99 ~Y~a----~~I~vLeGLEaVRkRPGMYIGs--t~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~-----DgsItV~D 167 (903)
T PTZ00109 99 EYDA----DDIVVLEGLEAVRKRPGMYIGN--TDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHK-----DGSVEISD 167 (903)
T ss_pred CCCh----HhCeehhccHHHhcCCCceeCC--CCCCcceEEEEEEeeccchhhccCCCcEEEEEEcC-----CCeEEEEe
Confidence 4776 2223356788888777 34433 222223335779999999987665 8888888754 24799999
Q ss_pred CCCCCCHHHHH--------Hhhh-------cccc-------------------cc-------------------cCCCCc
Q 007030 151 DGGGMDPESLR--------KCMS-------LGYS-------------------TK-------------------KANKTI 177 (621)
Q Consensus 151 NG~GMs~e~l~--------~~~~-------~G~S-------------------~K-------------------~~~~~I 177 (621)
||.||+-+.-. -+|+ |+.. .| .=...-
T Consensus 168 nGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSG 247 (903)
T PTZ00109 168 NGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSS 247 (903)
T ss_pred CCccccccccccCCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecC
Confidence 99999874322 1121 2221 00 001367
Q ss_pred ccccccccccccccCCEEEEEeeeCC
Q 007030 178 GQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 178 GrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
|+.|+|.+ ++-.|...+.|.+++.+
T Consensus 248 GLHGVG~S-VVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 248 GLHGVGLS-VVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCCCccee-eeeeccCeEEEEEEECC
Confidence 99999984 67789999999999863
No 57
>PRK10490 sensor protein KdpD; Provisional
Probab=97.05 E-value=0.0009 Score=80.32 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=64.7
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl--- 184 (621)
....++.+||+||+.+.. ..+.|.|.+.. .++...|+|.|||.||+++++.++|...++.+... ..+-.|+|+
T Consensus 778 ~L~qVL~NLL~NAik~s~-~g~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~~~-~~~G~GLGL~Iv 853 (895)
T PRK10490 778 LFERVLINLLENAVKYAG-AQAEIGIDAHV--EGERLQLDVWDNGPGIPPGQEQLIFDKFARGNKES-AIPGVGLGLAIC 853 (895)
T ss_pred HHHHHHHHHHHHHHHhCC-CCCeEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHhcCCCccCCCCC-CCCCccHHHHHH
Confidence 455789999999999832 23456666654 33556899999999999999999998555443321 122356665
Q ss_pred cccccccCCEEEEEeeeCC
Q 007030 185 KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+++.+.|...+
T Consensus 854 k~ive~hGG~I~v~s~~~~ 872 (895)
T PRK10490 854 RAIVEVHGGTIWAENRPEG 872 (895)
T ss_pred HHHHHHcCCEEEEEECCCC
Confidence 3445678999999987643
No 58
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=97.05 E-value=0.00061 Score=78.94 Aligned_cols=110 Identities=23% Similarity=0.239 Sum_probs=72.0
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHhhccchhhhhC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--
Q 007030 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-- 161 (621)
Q Consensus 86 ~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~-- 161 (621)
...++|++.-| +|+-|... .-..-.+.|+||||+|...+ .++.|.|.+.. ...|+|.|||.||+-+.-.
T Consensus 13 L~glE~VRkRPgMYIGst~~--~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~-----dgsitV~DnGrGIPv~~h~~~ 85 (637)
T TIGR01058 13 LEGLDAVRKRPGMYIGSTDS--KGLHHLVWEIVDNSVDEVLAGYADNITVTLHK-----DNSITVQDDGRGIPTGIHQDG 85 (637)
T ss_pred ecccHHHhcCCCCeECCCCc--chhheehhhhhcchhhhhhcCCCcEEEEEEcC-----CCeEEEEECCCcccCcccCcC
Confidence 45677777666 45544332 22233577999999997644 48888888863 2379999999999864221
Q ss_pred ------Hhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeCC
Q 007030 162 ------KCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 162 ------~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
-+|+ +-.+.|.+ ...-|+.|+|.+ ++-.|...++|.+++.+
T Consensus 86 ~~~~~E~v~t~LhaGgkfd~~~ykvSGGlhGvG~s-vvNAlS~~~~V~v~r~g 137 (637)
T TIGR01058 86 NISTVETVFTVLHAGGKFDQGGYKTAGGLHGVGAS-VVNALSSWLEVTVKRDG 137 (637)
T ss_pred CCccceeEEEEecccCcCCCCcccccCCccccccc-ccceeeceEEEEEEECC
Confidence 1232 21223331 245699999985 56678899999998753
No 59
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.04 E-value=0.001 Score=78.55 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=63.7
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK-- 185 (621)
+...+|.+||+||+.+.. ...|.|.+.. .++...|+|.|||.||+++++.++|...+..+.. .+-.|+|+.
T Consensus 513 ~l~~il~NLl~NAik~~~--~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~ 585 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTE--TGGIRLRVKR--HEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH---SQGTGLGLTIA 585 (921)
T ss_pred HHHHHHHHHHHHHhhcCC--CCCEEEEEEE--cCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC---CCCCchHHHHH
Confidence 345699999999999842 3347776655 2356689999999999999999999854443321 233566753
Q ss_pred -ccccccCCEEEEEeeeCC
Q 007030 186 -TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~~ 203 (621)
...-.+|+.+.|.|....
T Consensus 586 ~~~~~~~gG~i~i~s~~~~ 604 (921)
T PRK15347 586 SSLAKMMGGELTLFSTPGV 604 (921)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 345578999999888643
No 60
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=97.03 E-value=0.0012 Score=77.79 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=62.0
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCC-C--CCeEEEEECCCCCCHHHHHHhhhcccc-cccCCCCccccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD-N--SPALVFIDDGGGMDPESLRKCMSLGYS-TKKANKTIGQYGNG 183 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~-~--~~~I~I~DNG~GMs~e~l~~~~~~G~S-~K~~~~~IGrfGiG 183 (621)
+...++.+||+||+.+... ..|.|.+...... + ...|.|.|||.||+++++.++|...+. .+......|-.|+|
T Consensus 408 ~l~~vl~NLl~NAik~~~~--g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GLG 485 (919)
T PRK11107 408 RLQQIITNLVGNAIKFTES--GNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLG 485 (919)
T ss_pred HHHHHHHHHHHHHhhcCCC--CcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCCCCCCCcchh
Confidence 3456899999999998432 3344444332111 1 346999999999999999999873332 22112233456777
Q ss_pred c---cccccccCCEEEEEeeeCCC
Q 007030 184 F---KTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 184 l---KsAs~~lG~~v~V~Sr~~~~ 204 (621)
+ |...-.+|+++.|.|...++
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~G 509 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRG 509 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC
Confidence 6 34456799999999987543
No 61
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.01 E-value=0.00085 Score=76.11 Aligned_cols=88 Identities=23% Similarity=0.358 Sum_probs=64.7
Q ss_pred HHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---c
Q 007030 111 GAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK---T 186 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK---s 186 (621)
.++.+||.||+||+..- ...|+|.... .++...|+|.|||+||.++.+.++|..-+++|...+++ |+|+- .
T Consensus 500 QVLvNLl~NALDA~~~~~~~~i~i~~~~--~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~GL---GLGLaIS~~ 574 (603)
T COG4191 500 QVLVNLLQNALDAMAGQEDRRLSIRAQR--EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKGL---GLGLAISQN 574 (603)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEe--cCCeEEEEEccCCCCCCHHHHHhhcCCccccCcccCCc---chhHHHHHH
Confidence 58999999999998532 3457777665 45678899999999999999999999777777533333 33432 2
Q ss_pred cccccCCEEEEEeeeCC
Q 007030 187 STMRLGADVIVFSRATH 203 (621)
Q Consensus 187 As~~lG~~v~V~Sr~~~ 203 (621)
..-.+|+.+.|.+-..+
T Consensus 575 i~~d~GGsL~v~n~~~~ 591 (603)
T COG4191 575 IARDLGGSLEVANHPEG 591 (603)
T ss_pred HHHHhCCeEEeecCCCC
Confidence 34568999999865443
No 62
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=96.99 E-value=0.0012 Score=77.21 Aligned_cols=92 Identities=23% Similarity=0.228 Sum_probs=65.1
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc--CCCCcccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK--ANKTIGQYGNGF-- 184 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~--~~~~IGrfGiGl-- 184 (621)
...++.+|++||+++. ....|.|.+.... ++...|+|.|||.||+++++.++|...++.|. .....+--|+|+
T Consensus 399 l~qvl~NLl~NAik~~--~~g~v~i~~~~~~-~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~~~~~GtGLGL~i 475 (779)
T PRK11091 399 LRQILWNLISNAVKFT--QQGGVTVRVRYEE-GDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAV 475 (779)
T ss_pred HHHHHHHHHHHHHHhC--CCCcEEEEEEEcc-CCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCCCCCCCcchHHHH
Confidence 4468999999999984 2344666665531 34568999999999999999999985555542 122234456665
Q ss_pred -cccccccCCEEEEEeeeCC
Q 007030 185 -KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+.+.|.|....
T Consensus 476 ~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 476 SKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 3345678999999998754
No 63
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.93 E-value=0.0018 Score=76.89 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=64.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCC-CeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNS-PALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~-~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK- 185 (621)
+...++.+||+||+.+. ....|.|.+...+ +. ..|.|.|+|.||+++++.++|...++.+ .....|-.|+|+.
T Consensus 579 ~l~~il~nLi~NAik~~--~~g~i~i~~~~~~--~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-~~~~~~g~GLGL~i 653 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFT--DRGSVVLRVSLND--DSSLLFEVEDTGCGIAEEEQATLFDAFTQAD-GRRRSGGTGLGLAI 653 (968)
T ss_pred HHHHHHHHHHHHHHhhC--CCCeEEEEEEEcC--CCeEEEEEEeCCCCCCHHHHHHHHhhhhccC-CCCCCCCccHHHHH
Confidence 44568999999999983 2345777766532 34 6899999999999999999987433333 2223344577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 007030 186 --TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~~ 203 (621)
...-.+|+++.|.|...+
T Consensus 654 ~~~l~~~~gG~i~~~s~~~~ 673 (968)
T TIGR02956 654 SQRLVEAMDGELGVESELGV 673 (968)
T ss_pred HHHHHHHcCCEEEEEecCCC
Confidence 346678999999988654
No 64
>PRK09835 sensor kinase CusS; Provisional
Probab=96.92 E-value=0.0016 Score=70.63 Aligned_cols=91 Identities=24% Similarity=0.251 Sum_probs=62.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCcccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF-- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~IGrfGiGl-- 184 (621)
+...++.+||+||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+++...++.... ...-+-.|+|+
T Consensus 375 ~l~~vl~nll~Na~~~~~-~~~~I~i~~~~--~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i 451 (482)
T PRK09835 375 MLRRAISNLLSNALRYTP-AGEAITVRCQE--VDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAI 451 (482)
T ss_pred HHHHHHHHHHHHHHhcCC-CCCeEEEEEEE--eCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCCCCCCCCcchHHHH
Confidence 355789999999999732 13357777655 2345689999999999999999998744432211 11123356665
Q ss_pred -cccccccCCEEEEEeee
Q 007030 185 -KTSTMRLGADVIVFSRA 201 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~ 201 (621)
|.....+|+++.+.|..
T Consensus 452 ~~~i~~~~~g~i~~~s~~ 469 (482)
T PRK09835 452 VKSIVVAHKGTVAVTSDA 469 (482)
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 44566789999998864
No 65
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.92 E-value=0.0018 Score=75.48 Aligned_cols=90 Identities=19% Similarity=0.336 Sum_probs=63.0
Q ss_pred HHHHhhccchhhhhC-----------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-------------------
Q 007030 112 AIAELLDNAVDEVQN-----------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR------------------- 161 (621)
Q Consensus 112 AIaELVDNSiDA~~~-----------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~------------------- 161 (621)
.|.+||.||+|+-.. ....|.|.... .++...|.|.|||.||+++.+.
T Consensus 389 pL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~--~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~ 466 (670)
T PRK10547 389 PLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEH--QGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEV 466 (670)
T ss_pred HHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEE--cCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHH
Confidence 356899999998311 11246666654 3456679999999999998774
Q ss_pred --HhhhcccccccCCCCcccccccc---cccccccCCEEEEEeeeCC
Q 007030 162 --KCMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 162 --~~~~~G~S~K~~~~~IGrfGiGl---KsAs~~lG~~v~V~Sr~~~ 203 (621)
.+|..|+|++...+...-.|+|| |.....+|+.+.|.|+...
T Consensus 467 ~~lIF~pgfst~~~~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~ 513 (670)
T PRK10547 467 GMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGK 513 (670)
T ss_pred HHHhhcCCcccccccccCCCCchhHHHHHHHHHHcCCEEEEEecCCC
Confidence 25667788765434444458886 4556689999999998754
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.92 E-value=0.0018 Score=76.70 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=63.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl--- 184 (621)
+...++.+||+||+.+. ....|.|.+.. .++...|.|.|||.||+++.+.+.|...+..+.. .|-.|+|+
T Consensus 561 ~l~qil~NLl~NAik~~--~~g~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~---~~g~GLGL~i~ 633 (914)
T PRK11466 561 RIRQVITNLLSNALRFT--DEGSIVLRSRT--DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK---RGGTGLGLTIS 633 (914)
T ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC---CCCCcccHHHH
Confidence 44568999999999983 24457776654 2345679999999999999999999754432221 13346665
Q ss_pred cccccccCCEEEEEeeeCC
Q 007030 185 KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+++.|.|...+
T Consensus 634 ~~l~~~~gG~i~v~s~~~~ 652 (914)
T PRK11466 634 SRLAQAMGGELSATSTPEV 652 (914)
T ss_pred HHHHHHcCCEEEEEecCCC
Confidence 3345678999999998754
No 67
>PRK10337 sensor protein QseC; Provisional
Probab=96.90 E-value=0.0013 Score=71.06 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=59.7
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK-- 185 (621)
....++.+||+||+.+.. ....|.|.+.. ..|+|.|||.||+++++.+++...+..+. ...+-+|+|+.
T Consensus 352 ~l~~vl~Nli~NA~k~~~-~~~~i~i~~~~------~~i~i~D~G~Gi~~~~~~~if~~f~~~~~--~~~~g~GlGL~iv 422 (449)
T PRK10337 352 LLSLLVRNLLDNAIRYSP-QGSVVDVTLNA------RNFTVRDNGPGVTPEALARIGERFYRPPG--QEATGSGLGLSIV 422 (449)
T ss_pred HHHHHHHHHHHHHHhhCC-CCCeEEEEEEe------eEEEEEECCCCCCHHHHHHhcccccCCCC--CCCCccchHHHHH
Confidence 344589999999999832 12345555533 26999999999999999999875543221 12234677754
Q ss_pred -ccccccCCEEEEEeeeC
Q 007030 186 -TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~ 202 (621)
.....+|+++.+.+...
T Consensus 423 ~~i~~~~gg~l~~~s~~~ 440 (449)
T PRK10337 423 RRIAKLHGMNVSFGNAPE 440 (449)
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 44567899999988764
No 68
>PRK13557 histidine kinase; Provisional
Probab=96.83 E-value=0.0024 Score=69.83 Aligned_cols=91 Identities=26% Similarity=0.319 Sum_probs=61.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEcc-------------CCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCC
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIM-------------KDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANK 175 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~-------------~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~ 175 (621)
.-.++.+|+.||+++...+ ..+.|...... .++...|+|.|||.||+++...++|...++.+..
T Consensus 278 l~~vl~nll~NA~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~~-- 354 (540)
T PRK13557 278 AEVALLNVLINARDAMPEG-GRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKEE-- 354 (540)
T ss_pred HHHHHHHHHHHHHHhcccC-CeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCCC--
Confidence 3458999999999985322 33555443210 1233479999999999999999999866665532
Q ss_pred Ccccccccc---cccccccCCEEEEEeeeCC
Q 007030 176 TIGQYGNGF---KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 176 ~IGrfGiGl---KsAs~~lG~~v~V~Sr~~~ 203 (621)
.+-.|+|+ |.....+|+.+.+.|...+
T Consensus 355 -~~g~GlGL~i~~~~v~~~gG~i~~~s~~~~ 384 (540)
T PRK13557 355 -GKGTGLGLSMVYGFAKQSGGAVRIYSEVGE 384 (540)
T ss_pred -CCCCCccHHHHHHHHHHCCCEEEEEecCCC
Confidence 12235554 4456679999999988643
No 69
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.76 E-value=0.003 Score=77.25 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=61.6
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccC-CCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMK-DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~-~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK- 185 (621)
....++.+||+||+++...+...|.+....... .....|+|.|||.||+++++.++|...++.+... ..+-.|+|+.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~-~~~G~GLGL~i 906 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGR-QQTGSGLGLMI 906 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccccccccCC-CCCCcCchHHH
Confidence 455699999999999853332223332221111 1224589999999999999999998555444321 1233577763
Q ss_pred --ccccccCCEEEEEeeeCC
Q 007030 186 --TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 --sAs~~lG~~v~V~Sr~~~ 203 (621)
...-.+|+++.|.|...+
T Consensus 907 ~~~iv~~~gG~i~v~s~~~~ 926 (1197)
T PRK09959 907 CKELIKNMQGDLSLESHPGI 926 (1197)
T ss_pred HHHHHHHcCCEEEEEeCCCC
Confidence 345678999999998643
No 70
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.69 E-value=0.0035 Score=75.59 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=63.0
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK-- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK-- 185 (621)
.-.+|.+||+||+.+.. ...|.|.+.. .++...|+|.|+|.||+++++.++|...+..+. .....+-.|+|+.
T Consensus 563 L~qvl~NLl~NAik~t~--~G~I~I~v~~--~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~~GtGLGL~I~ 638 (924)
T PRK10841 563 LQQVISNLLSNAIKFTD--TGCIVLHVRV--DGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAIC 638 (924)
T ss_pred HHHHHHHHHHHHHhhCC--CCcEEEEEEE--eCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCCCCeehhHHHH
Confidence 44689999999999842 3346666554 234567999999999999999999974433221 1122233577764
Q ss_pred -ccccccCCEEEEEeeeCC
Q 007030 186 -TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~~ 203 (621)
...-.+|+++.|.|....
T Consensus 639 k~lv~~~gG~I~v~S~~g~ 657 (924)
T PRK10841 639 EKLINMMDGDISVDSEPGM 657 (924)
T ss_pred HHHHHHCCCEEEEEEcCCC
Confidence 335578999999998643
No 71
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.43 E-value=0.0081 Score=55.11 Aligned_cols=84 Identities=24% Similarity=0.298 Sum_probs=53.1
Q ss_pred HHHHHhhccchhhh-h-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 111 GAIAELLDNAVDEV-Q-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 111 ~AIaELVDNSiDA~-~-~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
.++.||+.||+.+. . .....|.|.+.. .++...|+|.|+|.||+. +.+++...++.+.. .+..|+|+.. .
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~I~v~~~~--~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~~---~~~~GlGL~l-v 113 (137)
T TIGR01925 42 TAVSEAVTNAIIHGYEENCEGVVYISATI--EDHEVYITVRDEGIGIEN--LEEAREPLYTSKPE---LERSGMGFTV-M 113 (137)
T ss_pred HHHHHHHHHHHHhccCCCCCcEEEEEEEE--eCCEEEEEEEEcCCCcCc--hhHhhCCCcccCCC---CCCCcccHHH-H
Confidence 48999999999751 1 113457777665 234568999999999983 45555544433321 2335667643 3
Q ss_pred cccCCEEEEEeeeC
Q 007030 189 MRLGADVIVFSRAT 202 (621)
Q Consensus 189 ~~lG~~v~V~Sr~~ 202 (621)
-+++.++.+.+...
T Consensus 114 ~~~~~~l~~~~~~~ 127 (137)
T TIGR01925 114 ENFMDDVSVDSEKE 127 (137)
T ss_pred HHhCCcEEEEECCC
Confidence 44667888877653
No 72
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.34 E-value=0.0069 Score=71.14 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=62.8
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccCCCCcccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~~~~IGrfGiGl--- 184 (621)
.-.+|.+|+|||.-..- ..+.|.|.... ..+...+.|.|+|.||++++++++|. |-+-.|.+. .-| -|+|+
T Consensus 776 ieQVLiNLleNA~Kyap-~~s~I~I~~~~--~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~-~~G-~GLGLsIc 850 (890)
T COG2205 776 IEQVLINLLENALKYAP-PGSEIRINAGV--ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESA-TRG-VGLGLAIC 850 (890)
T ss_pred HHHHHHHHHHHHHhhCC-CCCeEEEEEEE--ecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCCCC-CCC-ccccHHHH
Confidence 34689999999998721 24457777665 34677899999999999999999997 544444222 111 14443
Q ss_pred cccccccCCEEEEEeeeCCC
Q 007030 185 KTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~~~ 204 (621)
+...-..|+++.+.++..++
T Consensus 851 ~~iv~ahgG~I~a~~~~~gG 870 (890)
T COG2205 851 RGIVEAHGGTISAENNPGGG 870 (890)
T ss_pred HHHHHHcCCeEEEEEcCCCc
Confidence 23355789999999966543
No 73
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=96.34 E-value=0.0052 Score=69.46 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=55.9
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
+.+.++.|+|.||+.+. .++.|.|.+.. .++...|.|.|||.||+++.. ...++|.+. ++.-
T Consensus 469 ~l~~il~ell~NA~kha--~a~~i~V~~~~--~~~~~~l~V~D~G~Gi~~~~~------------~~~glGL~i--~~~~ 530 (569)
T PRK10600 469 HLLQIAREALSNALKHA--QASEVVVTVAQ--NQNQVKLSVQDNGCGVPENAE------------RSNHYGLII--MRDR 530 (569)
T ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEEEEE--cCCEEEEEEEECCCCCCcccc------------CCCCccHHH--HHHH
Confidence 46679999999999873 46678887765 235668999999999997631 112334433 3445
Q ss_pred ccccCCEEEEEeeeCC
Q 007030 188 TMRLGADVIVFSRATH 203 (621)
Q Consensus 188 s~~lG~~v~V~Sr~~~ 203 (621)
.-++|+++.|.|...+
T Consensus 531 ~~~lgG~l~i~s~~~~ 546 (569)
T PRK10600 531 AQSLRGDCRVRRRESG 546 (569)
T ss_pred HHHcCCEEEEEECCCC
Confidence 5679999999998754
No 74
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=96.04 E-value=0.0068 Score=75.29 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=63.1
Q ss_pred HHHHHHhhccchhhhh-----CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH--------hhh-cccccccC--
Q 007030 110 FGAIAELLDNAVDEVQ-----NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK--------CMS-LGYSTKKA-- 173 (621)
Q Consensus 110 f~AIaELVDNSiDA~~-----~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~--------~~~-~G~S~K~~-- 173 (621)
.-.+-|+||||+|... ..++.|.|.+.. +...|+|.|||.||+-+.-.. +|. +-.+.|.+
T Consensus 59 ~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~----d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfdd~ 134 (1388)
T PTZ00108 59 YKIFDEILVNAADNKARDKGGHRMTYIKVTIDE----ENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYDDT 134 (1388)
T ss_pred hhhHHHHhhhhhhhhcccCCCCCccEEEEEEec----cCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCCCC
Confidence 3578999999999865 237888888864 235799999999998643211 222 22344442
Q ss_pred --CCCcccccccccccccccCCEEEEEeeeC
Q 007030 174 --NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 174 --~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
...-|+.|+|.| .+-.+...+.|.+...
T Consensus 135 ~yKvSGGlhGVGas-vvNalS~~f~Vev~r~ 164 (1388)
T PTZ00108 135 EKRVTGGRNGFGAK-LTNIFSTKFTVECVDS 164 (1388)
T ss_pred ceeeecccccCCcc-ccccccceEEEEEEEC
Confidence 346899999986 5666899999999986
No 75
>PLN03128 DNA topoisomerase 2; Provisional
Probab=96.02 E-value=0.0076 Score=73.87 Aligned_cols=88 Identities=22% Similarity=0.239 Sum_probs=61.7
Q ss_pred HHHHHHHhhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH--------Hhhh-cccccccC----
Q 007030 109 AFGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR--------KCMS-LGYSTKKA---- 173 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~-~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~--------~~~~-~G~S~K~~---- 173 (621)
..-.+-|+||||+|.. .+ .++.|.|.+.. +...|+|.|||.||+-+.-. -+|+ +-.+.|.+
T Consensus 53 L~ki~dEIldNAvDe~~~~g~~~~I~V~i~~----~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd~~y 128 (1135)
T PLN03128 53 LYKIFDEILVNAADNKQRDPSMDSLKVDIDV----EQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDDNEK 128 (1135)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEEEc----CCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCCccc
Confidence 3458999999999986 32 37888888864 23589999999999865221 1222 22334442
Q ss_pred CCCcccccccccccccccCCEEEEEeee
Q 007030 174 NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 174 ~~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
...-|+.|+|.| .+-.+...++|.+..
T Consensus 129 kvSGGlhGvGas-vvNaLS~~f~Vev~d 155 (1135)
T PLN03128 129 KTTGGRNGYGAK-LANIFSTEFTVETAD 155 (1135)
T ss_pred eeeccccCCCCe-EEEeecCeEEEEEEE
Confidence 246899999986 556688999999984
No 76
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.82 E-value=0.016 Score=68.13 Aligned_cols=91 Identities=29% Similarity=0.457 Sum_probs=65.2
Q ss_pred HHHhhccchhhh--------hCC---CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHH-Hhh----------------
Q 007030 113 IAELLDNAVDEV--------QNG---ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR-KCM---------------- 164 (621)
Q Consensus 113 IaELVDNSiDA~--------~~g---At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~-~~~---------------- 164 (621)
+--||-||+|.= .+| ...|.+.-. ..++.-.|.|.|||.||+++.+. +++
T Consensus 437 L~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~--~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~ 514 (716)
T COG0643 437 LTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAY--HEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDE 514 (716)
T ss_pred HHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEE--cCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHH
Confidence 667899999972 011 123444443 35678899999999999988764 343
Q ss_pred -------hcccccccCCCCcccccccc---cccccccCCEEEEEeeeCCCC
Q 007030 165 -------SLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATHES 205 (621)
Q Consensus 165 -------~~G~S~K~~~~~IGrfGiGl---KsAs~~lG~~v~V~Sr~~~~~ 205 (621)
..|+|++..-+.+.=.|+|| |+..-++|+.+.|.|+...+.
T Consensus 515 Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT 565 (716)
T COG0643 515 EILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGT 565 (716)
T ss_pred HHHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHHcCCEEEEEecCCCCe
Confidence 34666666555566669996 888999999999999986654
No 77
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.78 E-value=0.013 Score=62.74 Aligned_cols=76 Identities=30% Similarity=0.433 Sum_probs=59.5
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccc-ccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGN-GFK 185 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGi-GlK 185 (621)
...|-++.|.|-|++-. ++|+.+.|.+... ++...|.|.|||.|.+.+... |-||+ |++
T Consensus 278 ~~l~rivQEaltN~~rH--a~A~~v~V~l~~~--~~~l~l~V~DnG~Gf~~~~~~----------------~~~GL~~mr 337 (365)
T COG4585 278 DALFRIVQEALTNAIRH--AQATEVRVTLERT--DDELRLEVIDNGVGFDPDKEG----------------GGFGLLGMR 337 (365)
T ss_pred HHHHHHHHHHHHHHHhc--cCCceEEEEEEEc--CCEEEEEEEECCcCCCccccC----------------CCcchhhHH
Confidence 45678999999999987 3699999998874 356899999999999965431 23343 466
Q ss_pred ccccccCCEEEEEeeeC
Q 007030 186 TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~ 202 (621)
.=...+|++++|.|...
T Consensus 338 eRv~~lgG~l~i~S~~g 354 (365)
T COG4585 338 ERVEALGGTLTIDSAPG 354 (365)
T ss_pred HHHHHcCCEEEEEecCC
Confidence 55778999999999984
No 78
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=95.76 E-value=0.014 Score=65.70 Aligned_cols=72 Identities=28% Similarity=0.432 Sum_probs=50.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
...++.|+++||+.+. .++.|.|.+.. .++...|+|.|||.||++++ ...++|..+ .|...
T Consensus 411 L~ril~nlL~NAiKha--~~~~I~I~l~~--~~~~i~l~V~DnG~Gi~~~~-------------~~~GLGL~i--vr~iv 471 (495)
T PRK11644 411 LFRVCQEGLNNIVKHA--DASAVTLQGWQ--QDERLMLVIEDDGSGLPPGS-------------GQQGFGLRG--MRERV 471 (495)
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEE--cCCEEEEEEEECCCCCCcCC-------------CCCCCcHHH--HHHHH
Confidence 3457899999999973 45667777765 33456899999999998652 112333333 24445
Q ss_pred cccCCEEEEEe
Q 007030 189 MRLGADVIVFS 199 (621)
Q Consensus 189 ~~lG~~v~V~S 199 (621)
-.+|+++.+.|
T Consensus 472 ~~~GG~i~v~S 482 (495)
T PRK11644 472 TALGGTLTISC 482 (495)
T ss_pred HHcCCEEEEEc
Confidence 67999999988
No 79
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.75 E-value=0.0063 Score=70.29 Aligned_cols=83 Identities=22% Similarity=0.196 Sum_probs=57.6
Q ss_pred HHHHhhccchhhhhC---C-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH-----------hhh-cccccccC--
Q 007030 112 AIAELLDNAVDEVQN---G-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK-----------CMS-LGYSTKKA-- 173 (621)
Q Consensus 112 AIaELVDNSiDA~~~---g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~-----------~~~-~G~S~K~~-- 173 (621)
.+-|+||||+|...+ + ++.|.|.+. ...|+|.|||.||+-+.-.. +|. +-.+.|.+
T Consensus 49 i~~EIldNavDe~~~~~~g~~~~I~V~i~------dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd~~ 122 (602)
T PHA02569 49 IIDEIIDNSVDEAIRTNFKFANKIDVTIK------NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFDDT 122 (602)
T ss_pred eeehhhhhhhhhhhccCCCCCcEEEEEEc------CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccCCc
Confidence 577999999998765 3 888888775 23799999999998643311 121 11223331
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 007030 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 174 -~~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
...-|+.|+|.+ ++-.|...+.|.++.
T Consensus 123 ykvSGGlhGVG~s-vvNaLS~~~~V~v~~ 150 (602)
T PHA02569 123 NRVTGGMNGVGSS-LTNFFSVLFIGETCD 150 (602)
T ss_pred ceeeCCcCCccce-eeeccchhhheEEEc
Confidence 235799999985 566788888988765
No 80
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=95.54 E-value=0.029 Score=61.04 Aligned_cols=90 Identities=23% Similarity=0.334 Sum_probs=66.1
Q ss_pred HHHHHHhhccchhhhhC-------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc----C---CC
Q 007030 110 FGAIAELLDNAVDEVQN-------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK----A---NK 175 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~-------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~----~---~~ 175 (621)
.-++.||..||+.|... +-..|.|.+..+ ++...|.|.|-|+|++.+++.+.|++++|+-. + ..
T Consensus 262 ~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~g--deDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~ 339 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKG--DEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTA 339 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecC--CcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcC
Confidence 35899999999999742 123477777653 45678999999999999999999999998754 1 23
Q ss_pred Cccccccccccc---ccccCCEEEEEeee
Q 007030 176 TIGQYGNGFKTS---TMRLGADVIVFSRA 201 (621)
Q Consensus 176 ~IGrfGiGlKsA---s~~lG~~v~V~Sr~ 201 (621)
.+-=||.|+..+ .-.+|+++.+.|-.
T Consensus 340 plaGfG~GLPisrlYa~yf~Gdl~L~Sle 368 (414)
T KOG0787|consen 340 PLAGFGFGLPISRLYARYFGGDLKLQSLE 368 (414)
T ss_pred cccccccCCcHHHHHHHHhCCCeeEEeee
Confidence 344566665432 34577888888876
No 81
>PRK03660 anti-sigma F factor; Provisional
Probab=95.31 E-value=0.046 Score=50.57 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=52.1
Q ss_pred HHHHHhhccchhhhhCC-C-ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 111 GAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~g-A-t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
-++.|++.||+...... . ..|.|.+.. .++...++|.|+|.||++ +...+...++.+.. -+.-|+|+.. .
T Consensus 42 ~~l~eli~Nai~h~~~~~~~~~i~i~~~~--~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~~---~~~~GlGL~i-~ 113 (146)
T PRK03660 42 TAVSEAVTNAIIHGYENNPDGVVYIEVEI--EEEELEITVRDEGKGIED--IEEAMQPLYTTKPE---LERSGMGFTV-M 113 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEEE--CCCEEEEEEEEccCCCCh--HHHhhCCCcccCCC---CCCccccHHH-H
Confidence 48999999999652111 1 346676654 334567999999999986 44555544333321 1234777754 3
Q ss_pred cccCCEEEEEeeeC
Q 007030 189 MRLGADVIVFSRAT 202 (621)
Q Consensus 189 ~~lG~~v~V~Sr~~ 202 (621)
.+++..+.+.+...
T Consensus 114 ~~~~~~i~~~~~~~ 127 (146)
T PRK03660 114 ESFMDEVEVESEPG 127 (146)
T ss_pred HHhCCeEEEEecCC
Confidence 35777888776653
No 82
>PRK13560 hypothetical protein; Provisional
Probab=95.26 E-value=0.019 Score=66.23 Aligned_cols=76 Identities=28% Similarity=0.290 Sum_probs=49.5
Q ss_pred HHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccccc
Q 007030 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (621)
Q Consensus 112 AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs~ 189 (621)
+|.+|+.||+++...+ ...|.|.+... .++...|+|.|||+||+++.. + ....++|.+- .|...-
T Consensus 715 il~NLl~NAik~~~~~~~~~~i~i~~~~~-~~~~v~i~V~D~G~GI~~~~~-----~-----~~~~gLGLai--~~~iv~ 781 (807)
T PRK13560 715 IISELLSNALKHAFPDGAAGNIKVEIREQ-GDGMVNLCVADDGIGLPAGFD-----F-----RAAETLGLQL--VCALVK 781 (807)
T ss_pred HHHHHHHHHHHhhccCCCCceEEEEEEEc-CCCEEEEEEEeCCCcCCcccc-----c-----cccCCccHHH--HHHHHH
Confidence 6889999999974222 24566666542 134567999999999998631 0 0112233333 245567
Q ss_pred ccCCEEEEEee
Q 007030 190 RLGADVIVFSR 200 (621)
Q Consensus 190 ~lG~~v~V~Sr 200 (621)
.+|+.+.|.|.
T Consensus 782 ~~gG~I~v~S~ 792 (807)
T PRK13560 782 QLDGEIALDSR 792 (807)
T ss_pred HcCCEEEEEcC
Confidence 89999999985
No 83
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=95.15 E-value=0.043 Score=62.13 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=60.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc-ccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF-KTS 187 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl-KsA 187 (621)
....+.|-+-|++.. +.|+.|+|.+..++ +...+.|+|||+|+++. ....|.||+-+ .-=
T Consensus 482 lLqIvREAlsNa~KH--a~As~i~V~~~~~~--g~~~~~VeDnG~Gi~~~---------------~e~~gHyGL~IM~ER 542 (574)
T COG3850 482 LLQIVREALSNAIKH--AQASEIKVTVSQND--GQVTLTVEDNGVGIDEA---------------AEPSGHYGLNIMRER 542 (574)
T ss_pred HHHHHHHHHHHHHHh--cccCeEEEEEEecC--CeEEEEEeeCCcCCCCc---------------cCCCCCcchHHHHHH
Confidence 346899999999987 36899999988754 78899999999999965 24457888643 122
Q ss_pred ccccCCEEEEEeeeCCCC
Q 007030 188 TMRLGADVIVFSRATHES 205 (621)
Q Consensus 188 s~~lG~~v~V~Sr~~~~~ 205 (621)
.-++++++.|..+..+|.
T Consensus 543 A~~L~~~L~i~~~~~gGT 560 (574)
T COG3850 543 AQRLGGQLRIRRREGGGT 560 (574)
T ss_pred HHHhcCeEEEeecCCCCe
Confidence 457999999999987654
No 84
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=95.10 E-value=0.023 Score=54.49 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=52.1
Q ss_pred HHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccccc
Q 007030 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (621)
Q Consensus 112 AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs~ 189 (621)
|+.|++-||+.....+ ...|.|.+.. .++...|.|.|+|.||+++.+...+......+.. .....-|+|+... -
T Consensus 46 av~Ea~~Nai~Hg~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~-~~~~~~G~GL~li-~ 121 (161)
T PRK04069 46 AVSEACTNAVQHAYKEDEVGEIHIRFEI--YEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI-EDLREGGLGLFLI-E 121 (161)
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEEEE--ECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-cccCCCceeHHHH-H
Confidence 8999999999873221 1346666655 3467899999999999998887766533322211 0011125565432 2
Q ss_pred ccCCEEEEEe
Q 007030 190 RLGADVIVFS 199 (621)
Q Consensus 190 ~lG~~v~V~S 199 (621)
.+.+.+.+.+
T Consensus 122 ~l~d~v~~~~ 131 (161)
T PRK04069 122 TLMDDVTVYK 131 (161)
T ss_pred HHHHhEEEEc
Confidence 4566677664
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=94.14 E-value=0.072 Score=51.18 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccccc
Q 007030 112 AIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTM 189 (621)
Q Consensus 112 AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs~ 189 (621)
|+.|++-||+.....+ ...|.|.+.. .++...|.|.|+|.||+++.+...+........ ......-|.|+.. .-
T Consensus 46 av~Ea~~Nai~ha~~~~~~~~I~I~~~~--~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~-~~~~~~~G~GL~L-i~ 121 (159)
T TIGR01924 46 AVSEACTNAVKHAYKEGENGEIGISFHI--YEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEP-IDDLREGGLGLFL-IE 121 (159)
T ss_pred HHHHHHHHHHHhccCCCCCCeEEEEEEE--eCCEEEEEEEEcccccCchhhccccCCCCCCCC-cccCCCCccCHHH-HH
Confidence 8999999999973211 2457777765 345678999999999999887765432111111 1111223666643 34
Q ss_pred ccCCEEEEEe
Q 007030 190 RLGADVIVFS 199 (621)
Q Consensus 190 ~lG~~v~V~S 199 (621)
++..++.+.+
T Consensus 122 ~L~D~v~~~~ 131 (159)
T TIGR01924 122 TLMDEVEVYE 131 (159)
T ss_pred HhccEEEEEe
Confidence 6778888875
No 86
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=94.10 E-value=0.069 Score=48.07 Aligned_cols=78 Identities=26% Similarity=0.245 Sum_probs=51.4
Q ss_pred HHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 111 GAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
-|+.|++-||+.....+. ..|.|.+.. ..+...|.|.|+|.|+++.........+. .....-|.|+. -.
T Consensus 34 lav~E~~~Nav~H~~~~~~~~~v~v~~~~--~~~~l~i~v~D~G~~~d~~~~~~~~~~~~------~~~~~~G~Gl~-li 104 (125)
T PF13581_consen 34 LAVSEALTNAVEHGYPGDPDGPVDVRLEV--DPDRLRISVRDNGPGFDPEQLPQPDPWEP------DSLREGGRGLF-LI 104 (125)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEE--cCCEEEEEEEECCCCCChhhccCcccccC------CCCCCCCcCHH-HH
Confidence 499999999999843222 356666655 34568899999999999987654432111 12223355653 24
Q ss_pred cccCCEEEE
Q 007030 189 MRLGADVIV 197 (621)
Q Consensus 189 ~~lG~~v~V 197 (621)
-++..++.+
T Consensus 105 ~~l~D~~~~ 113 (125)
T PF13581_consen 105 RSLMDEVDY 113 (125)
T ss_pred HHHHcEEEE
Confidence 568888888
No 87
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=93.77 E-value=0.11 Score=60.02 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=61.1
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhc---cccc-ccCCCCcccccccc--
Q 007030 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSL---GYST-KKANKTIGQYGNGF-- 184 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~---G~S~-K~~~~~IGrfGiGl-- 184 (621)
....+||.||+..-....+.|.|.... .+....+.|.|||.|+++..++++|.+ ++|. ++.. -|+|+
T Consensus 639 qv~~NLi~Naik~~~~e~~~i~I~~~r--~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~g-----tG~GL~I 711 (750)
T COG4251 639 QVFQNLIANAIKFGGPENPDIEISAER--QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLG-----TGLGLAI 711 (750)
T ss_pred HHHHHHHhhheecCCCCCCceEEeeec--cCCceEEEecCCCCCcCHHHHHHHHHHHHhcCchhhhcC-----CCccHHH
Confidence 467899999998744345667777554 456789999999999999999998752 2222 2222 45554
Q ss_pred -cccccccCCEEEEEeeeCC
Q 007030 185 -KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-+.++.+.|.|+...
T Consensus 712 ~kkI~e~H~G~i~vEs~~gE 731 (750)
T COG4251 712 CKKIAERHQGRIWVESTPGE 731 (750)
T ss_pred HHHHHHHhCceEEEeecCCC
Confidence 4456678899999999643
No 88
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=93.69 E-value=0.087 Score=56.37 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=56.4
Q ss_pred HHHHHhhccchhhhhCCC---ceEEEE------EEEcc--CCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccc
Q 007030 111 GAIAELLDNAVDEVQNGA---TFVKVD------RVNIM--KDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gA---t~V~I~------i~~~~--~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGr 179 (621)
.|+-+||.||..|..+.+ ..|.+. +.... ..-...|.|.|||.|++++-....|..--|.|.+.+
T Consensus 244 Qv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~Gs---- 319 (363)
T COG3852 244 QVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREGGT---- 319 (363)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCCCc----
Confidence 699999999999964211 122221 11100 011345889999999999999999987667776544
Q ss_pred cccccccc---ccccCCEEEEEeeeC
Q 007030 180 YGNGFKTS---TMRLGADVIVFSRAT 202 (621)
Q Consensus 180 fGiGlKsA---s~~lG~~v~V~Sr~~ 202 (621)
|+|+..+ .-..|+.++..|+..
T Consensus 320 -GLGLala~~li~qH~G~Ie~~S~Pg 344 (363)
T COG3852 320 -GLGLALAQNLIDQHGGKIEFDSWPG 344 (363)
T ss_pred -cccHHHHHHHHHhcCCEEEEeccCC
Confidence 5555332 334678888888873
No 89
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=93.48 E-value=0.1 Score=60.10 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=58.5
Q ss_pred HHHHHhhccchhhhhCC-CceE---EEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc
Q 007030 111 GAIAELLDNAVDEVQNG-ATFV---KVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~g-At~V---~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs 186 (621)
.|+.+|+.||.+|+.+. +... .|.+.....++...+.|.|||.|.+.+..++++..--+++...+++|.-= .|.
T Consensus 603 Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~KGTGLGLAi--VKk 680 (712)
T COG5000 603 QVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREKGTGLGLAI--VKK 680 (712)
T ss_pred HHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccccccccHHH--HHH
Confidence 58999999999998421 1111 24444444678889999999999999999999984444443323222211 244
Q ss_pred cccccCCEEEEEeee
Q 007030 187 STMRLGADVIVFSRA 201 (621)
Q Consensus 187 As~~lG~~v~V~Sr~ 201 (621)
..--.|+.+.+.-.+
T Consensus 681 IvEeHGG~leL~da~ 695 (712)
T COG5000 681 IVEEHGGRLELHNAP 695 (712)
T ss_pred HHHhcCCeEEecCCC
Confidence 555667777766654
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=93.09 E-value=0.088 Score=58.61 Aligned_cols=84 Identities=18% Similarity=0.236 Sum_probs=52.7
Q ss_pred HHHHHhhccchhhhh-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc--
Q 007030 111 GAIAELLDNAVDEVQ-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS-- 187 (621)
Q Consensus 111 ~AIaELVDNSiDA~~-~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA-- 187 (621)
-.|.=|||||+.+-. .......|.+.....++...++|.|||.||+++......+-|..+ .|+|+...
T Consensus 353 l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~~~r---------~giGL~Nv~~ 423 (456)
T COG2972 353 LVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKGENR---------SGIGLSNVKE 423 (456)
T ss_pred HHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhccCc---------ccccHHHHHH
Confidence 378999999999842 112223444444334567889999999999999887766533322 46666432
Q ss_pred --ccccCC-EEEEEeeeCC
Q 007030 188 --TMRLGA-DVIVFSRATH 203 (621)
Q Consensus 188 --s~~lG~-~v~V~Sr~~~ 203 (621)
...-|. .+.+.|+..+
T Consensus 424 rl~~~~g~~~~~i~s~~~~ 442 (456)
T COG2972 424 RLKLYFGEPGLSIDSQPGK 442 (456)
T ss_pred HHHHeeCCcceeEeecCCC
Confidence 223344 3566666543
No 91
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=92.90 E-value=0.19 Score=56.11 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---c
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl---K 185 (621)
...++.||+.||+.+. .+..|.|.+... .++...|.|.|||+||+++.. ... |+|+ +
T Consensus 472 l~qv~~nll~NA~k~~--~~~~i~i~~~~~-~~~~~~i~V~D~G~Gi~~~~~------------~~~-----glGL~i~~ 531 (565)
T PRK10935 472 LLQIIREATLNAIKHA--NASEIAVSCVTN-PDGEHTVSIRDDGIGIGELKE------------PEG-----HYGLNIMQ 531 (565)
T ss_pred HHHHHHHHHHHHHhcC--CCCeEEEEEEEc-CCCEEEEEEEECCcCcCCCCC------------CCC-----CcCHHHHH
Confidence 3457899999999873 345677766542 134567999999999996321 111 3444 3
Q ss_pred ccccccCCEEEEEeeeCC
Q 007030 186 TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~ 203 (621)
.-.-.+|+.+.+.|...+
T Consensus 532 ~iv~~~~G~i~v~s~~~~ 549 (565)
T PRK10935 532 ERAERLGGTLTISQPPGG 549 (565)
T ss_pred HHHHHcCCEEEEEECCCC
Confidence 445679999999988754
No 92
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=92.45 E-value=0.23 Score=55.72 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=50.3
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc
Q 007030 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK 172 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~ 172 (621)
.++-+|+-||+||.+..|..|.|+...+ ..+...|-|.|||.|-+.+-+.+.+..-+++|.
T Consensus 567 QVlvNl~~NaldA~~h~~p~i~~~~~~~-~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~ 627 (673)
T COG4192 567 QVLVNLIVNALDASTHFAPWIKLIALGT-EQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE 627 (673)
T ss_pred HHHHHHHHHHHhhhccCCceEEEEeecC-cccceEEEEecCCCCCchhHHHHhcCCcccccc
Confidence 4788999999999877777777766542 456788999999999999999999997777664
No 93
>PRK13559 hypothetical protein; Provisional
Probab=91.96 E-value=0.28 Score=51.54 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHhhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 110 FGAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 110 f~AIaELVDNSiDA~~--~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
..++.||+.||+.+-. .....|.|.+.....++...|.+.|||+||+++. ...++|.+. ++..
T Consensus 269 ~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~-------------~~~g~Gl~i--~~~~ 333 (361)
T PRK13559 269 GLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKL-------------AKRGFGTVI--IGAM 333 (361)
T ss_pred HHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCC-------------CCCCcHHHH--HHHH
Confidence 3588999999998721 1234677776333345567899999999987541 223333332 2333
Q ss_pred ccc-cCCEEEEEeee
Q 007030 188 TMR-LGADVIVFSRA 201 (621)
Q Consensus 188 s~~-lG~~v~V~Sr~ 201 (621)
.-. +|+.+.+.+..
T Consensus 334 v~~~~gG~i~~~~~~ 348 (361)
T PRK13559 334 VESQLNGQLEKTWSD 348 (361)
T ss_pred HHHHcCCeEEEEEcC
Confidence 444 99999998864
No 94
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=91.74 E-value=0.29 Score=53.36 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=61.0
Q ss_pred HHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccCCCCcccccccc---cc
Q 007030 111 GAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKANKTIGQYGNGF---KT 186 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~~~~IGrfGiGl---Ks 186 (621)
.+|-++|.||+..- -+...|.|.+.. .+..-.|+|.|.|.||+.+++.++|. |-+-+|...+..|--|+|+ |.
T Consensus 345 QVldNii~NA~KYs-P~Gg~Itv~~~~--~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~gGTGLGLaIake 421 (459)
T COG5002 345 QVLDNIISNALKYS-PDGGRITVSVKQ--RETWVEISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMGGTGLGLAIAKE 421 (459)
T ss_pred HHHHHHHHHHhhcC-CCCCeEEEEEee--eCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhhhhhcCCCCchhHHHHHH
Confidence 57888889998762 123456666554 44567899999999999999999997 5444454445566667776 33
Q ss_pred cccccCCEEEEEeee
Q 007030 187 STMRLGADVIVFSRA 201 (621)
Q Consensus 187 As~~lG~~v~V~Sr~ 201 (621)
..-..|+.+=..|..
T Consensus 422 iV~~hgG~iWA~s~~ 436 (459)
T COG5002 422 IVQAHGGRIWAESEE 436 (459)
T ss_pred HHHHhCCeEEEeccc
Confidence 455677777666664
No 95
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=91.18 E-value=0.44 Score=52.18 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=66.6
Q ss_pred cCcccccccccccccccccccccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh
Q 007030 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS 165 (621)
Q Consensus 86 ~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~ 165 (621)
.++-.++..+++=.+-+.|..--.+-..-|++.|=... +.|+.|+|.+.. .++..+++|+|||.|+++..
T Consensus 388 rgihcq~~~~~n~~~ldet~rvTLyRl~QE~LNNI~KH--A~AS~V~i~l~~--~~e~l~Lei~DdG~Gl~~~~------ 457 (497)
T COG3851 388 RGIHCQLDWRINETALDETQRVTLYRLCQELLNNICKH--ADASAVTIQLWQ--QDERLMLEIEDDGSGLPPGS------ 457 (497)
T ss_pred cCeEEEeccccCcccCCcceeEeHHHHHHHHHHHHHhc--cccceEEEEEee--CCcEEEEEEecCCcCCCCCC------
Confidence 34444555555556666676677788899999998876 368888888876 33457899999999998321
Q ss_pred cccccccCCCCcccccccccccccccCCEEEEEeee
Q 007030 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 166 ~G~S~K~~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
+..+.|..| |..-...+|+++++.|..
T Consensus 458 -------~v~G~Gl~G--mrERVsaLGG~ltlssq~ 484 (497)
T COG3851 458 -------GVQGFGLTG--MRERVSALGGTLTLSSQH 484 (497)
T ss_pred -------CccCcCcch--HHHHHHHhCCceEEEecc
Confidence 223344444 333455699999998854
No 96
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=89.10 E-value=0.49 Score=45.35 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=51.5
Q ss_pred HHHHHhhccchhhhhCCC---ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc--CCCCccccccccc
Q 007030 111 GAIAELLDNAVDEVQNGA---TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK--ANKTIGQYGNGFK 185 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~gA---t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~--~~~~IGrfGiGlK 185 (621)
-|+.|++.|++.+.-... ..|.|.+.. .++...++|.|-|.|+ +++...+..++.... ...++|.|+
T Consensus 43 ~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~--~~~~~~i~i~D~G~~~--~~~~~~~~~~~~~~~~~~~~G~Gl~l---- 114 (146)
T COG2172 43 IAVSEALTNAVKHAYKLDPSEGEIRIEVSL--DDGKLEIRIWDQGPGI--EDLEESLGPGDTTAEGLQEGGLGLFL---- 114 (146)
T ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEEEE--cCCeEEEEEEeCCCCC--CCHHHhcCCCCCCCcccccccccHHH----
Confidence 399999999999842211 346666655 3467899999999554 566677776644332 223444444
Q ss_pred ccccccCCEEEEEeee
Q 007030 186 TSTMRLGADVIVFSRA 201 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~ 201 (621)
..++-.++.+....
T Consensus 115 --~~~~~D~~~~~~~~ 128 (146)
T COG2172 115 --AKRLMDEFSYERSE 128 (146)
T ss_pred --HhhhheeEEEEecc
Confidence 33467777777554
No 97
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=87.69 E-value=0.68 Score=47.17 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=33.9
Q ss_pred HHHHhhccchhhhhC--CCceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 007030 112 AIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (621)
Q Consensus 112 AIaELVDNSiDA~~~--gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e 158 (621)
++-||+-||+..... ....|.|.+.....++...++|.|||.|++.+
T Consensus 126 iv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 126 IVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 789999999998422 24557777766332213789999999999843
No 98
>PF14501 HATPase_c_5: GHKL domain
Probab=82.03 E-value=2.7 Score=36.86 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCC
Q 007030 111 GAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGG 154 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~G 154 (621)
..++.|+|||++|.... .+.|.|.+.. .++...|.|......
T Consensus 8 ~il~nlldNAiea~~~~~~~~~I~i~~~~--~~~~~~i~i~N~~~~ 51 (100)
T PF14501_consen 8 RILGNLLDNAIEACKKYEDKRFISISIRE--ENGFLVIIIENSCEK 51 (100)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEEe--cCCEEEEEEEECCCC
Confidence 48999999999997532 4567777765 346667777776555
No 99
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=70.48 E-value=5 Score=45.61 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=32.6
Q ss_pred HHHHhhccchhhhhC---CCceEEEEEEEccCCCCCeEEEEECCCCCCHH
Q 007030 112 AIAELLDNAVDEVQN---GATFVKVDRVNIMKDNSPALVFIDDGGGMDPE 158 (621)
Q Consensus 112 AIaELVDNSiDA~~~---gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e 158 (621)
.|-=||+||+..-.. +.-.|.|.+.. .+....+.|+|||.|++++
T Consensus 460 ilQPLVENAIKHG~~~~~~~g~V~I~V~~--~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 460 ILQPLVENAIKHGISQLKDTGRVTISVEK--EDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred hhhHHHHHHHHhcccchhcCCceEEEEEE--eCCeEEEEEecCCCCcCCC
Confidence 678899999987311 12336666655 3456899999999999987
No 100
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=67.99 E-value=16 Score=44.05 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL 160 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l 160 (621)
.+...-|+++||.| ...++..-.|.+..++ +...|.|.+||.|++-+..
T Consensus 54 l~ki~dEilvNaad-k~rd~~m~~i~v~i~~--e~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 54 LYKIFDEILVNAAD-KQRDPKMNTIKVTIDK--EKNEISVYNNGKGIPVTIH 102 (842)
T ss_pred HHHHHHHHhhcccc-cccCCCcceeEEEEcc--CCCEEEEEeCCCcceeeec
Confidence 34578999999999 5555443334444333 4568999999999986543
No 101
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=66.29 E-value=11 Score=41.33 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=52.4
Q ss_pred HHHHHhhccchhhhh--CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---
Q 007030 111 GAIAELLDNAVDEVQ--NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (621)
Q Consensus 111 ~AIaELVDNSiDA~~--~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK--- 185 (621)
.|+--.++-|+.-++ ++|+.|.|.+.. .++...+.|.|||.|.+-++...-+ .|+|+.
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~--~~d~vql~vrDnG~GF~~~~~~~~~---------------~GiGLRNMr 420 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQ--MGDMVQLMVRDNGVGFSVKEALQKR---------------HGIGLRNMR 420 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEecc--CCcceEEEEecCCCCccchhhccCc---------------cccccccHH
Confidence 366666666665543 478888887754 4567789999999999977664221 355543
Q ss_pred ccccccCCEEEEEeeeCC
Q 007030 186 TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~ 203 (621)
--...+|+.++|.|...+
T Consensus 421 ERma~~GG~~~v~s~p~G 438 (459)
T COG4564 421 ERMAHFGGELEVESSPQG 438 (459)
T ss_pred HHHHHhCceEEEEecCCC
Confidence 123458999999999874
No 102
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=36.96 E-value=88 Score=28.46 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=42.5
Q ss_pred eEEEEeeeccCC--CcccCceEEEEeCceecccc--cc----cCCCCccCceEEEEEecC----c----cCCCCCccc--
Q 007030 396 AETTIGFIKEAP--ALSVSGFNVYHKNRLIRPFW--KV----TGDGSLKGNGVVGVLEAN----F----IEPTHDKQD-- 457 (621)
Q Consensus 396 v~itiGf~kea~--~~~~~G~~vY~~nRLI~~~e--kV----g~~~~~~grGVIGVlea~----f----LePthnKQd-- 457 (621)
+.++ ||+..+. ..+..+.++|-|||.|..-. +. .......++.-+.+|..+ . +.| +|+.
T Consensus 23 ~~i~-G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P~~vL~i~~p~~~vDVNvhP--~K~eV~ 99 (119)
T PF01119_consen 23 FSIE-GYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYPIFVLFIEIPPSEVDVNVHP--AKREVR 99 (119)
T ss_dssp EEEE-EEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-EEEEEEE-SGGGEEETSST--TTT-EE
T ss_pred EEEE-EEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCceEEEEEEcchHHccccccc--cceEEE
Confidence 4444 6665442 23457999999999997321 11 122334455555565542 1 444 4766
Q ss_pred cc-ccHHHHHHHHHHHHHH
Q 007030 458 FE-RSTLFVRLESKLKQMT 475 (621)
Q Consensus 458 Fe-~t~~y~~L~~~L~e~l 475 (621)
|. ...++..+++.+.+.+
T Consensus 100 f~~e~~i~~~i~~~i~~~L 118 (119)
T PF01119_consen 100 FRDEDEILNLIEEAIREAL 118 (119)
T ss_dssp ETTHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHh
Confidence 54 4677777777777765
No 103
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=35.01 E-value=9.8 Score=44.47 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhhcccchhhhhh---hcccccccc
Q 007030 586 ICEENIQLFIKYVLYFLPSSLVSCCK---LYQHHLHVQ 620 (621)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 620 (621)
-+-|||.|||=|+.-==-.-+-+-|+ || |||||+
T Consensus 445 TRH~NIlLFMG~~~~p~~AIiTqwCeGsSLY-~hlHv~ 481 (678)
T KOG0193|consen 445 TRHENILLFMGACMNPPLAIITQWCEGSSLY-THLHVQ 481 (678)
T ss_pred cchhhheeeehhhcCCceeeeehhccCchhh-hhccch
Confidence 35689999998875211122334565 66 789986
No 104
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=24.27 E-value=1.8e+02 Score=26.94 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=44.9
Q ss_pred eEEEEeeeccCC-CcccCceEEEEeCceecccc--ccc----CCCCccCceEEEEEec----CccC--CCCCccc--ccc
Q 007030 396 AETTIGFIKEAP-ALSVSGFNVYHKNRLIRPFW--KVT----GDGSLKGNGVVGVLEA----NFIE--PTHDKQD--FER 460 (621)
Q Consensus 396 v~itiGf~kea~-~~~~~G~~vY~~nRLI~~~e--kVg----~~~~~~grGVIGVlea----~fLe--PthnKQd--Fe~ 460 (621)
+++. ||+..+. ..+....++|-|||.|+... +.. ..-...++.-+.+|.. +.++ +.-+|+. |.+
T Consensus 32 ~~i~-G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~ 110 (127)
T cd03483 32 FKVK-GLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPKGAHPFVYLSLEIPPENVDVNVHPTKREVHFLN 110 (127)
T ss_pred EEEE-EEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcCCCccEEEEEEEeChHHeeeccCCCccEEEecC
Confidence 5555 7764431 24466899999999997321 111 1112345655555543 2233 2567777 544
Q ss_pred -cHHHHHHHHHHHHHH
Q 007030 461 -STLFVRLESKLKQMT 475 (621)
Q Consensus 461 -t~~y~~L~~~L~e~l 475 (621)
..++..+...+++.|
T Consensus 111 e~~i~~~i~~~v~~~L 126 (127)
T cd03483 111 EEEIIERIQKLVEDKL 126 (127)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 566777777776654
No 105
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=23.30 E-value=1.6e+02 Score=30.40 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=18.3
Q ss_pred cchhhHhhHHH-------------HHHHHHHHHhhcc
Q 007030 580 TISADQICEEN-------------IQLFIKYVLYFLP 603 (621)
Q Consensus 580 ~~~~~~~~~~~-------------~~~~~~~~~~~~~ 603 (621)
.++-.++|||| -.||.=|.+.||-
T Consensus 114 ~~~kk~~CEen~~K~amLIClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 114 EIFKKEICEENNNKMAMLICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred cccchhhhhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999 3578888888874
No 106
>PRK09697 protein secretion protein GspB; Provisional
Probab=20.46 E-value=58 Score=30.50 Aligned_cols=21 Identities=38% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCCceeEeccCCCCCCCcccc
Q 007030 6 EKPQNVVELTSSDDEDNVAAG 26 (621)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (621)
.+|.+|||--|.|||.||++-
T Consensus 84 KqPLPV~E~V~~edE~gvavE 104 (139)
T PRK09697 84 KQPLPVVESVEEEDEPGVAVE 104 (139)
T ss_pred cCCCCCccccccccccccccc
Confidence 478999999999999999984
Done!