Query 007030
Match_columns 621
No_of_seqs 324 out of 1329
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:20:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4s_A Chaperone protein HTPG; 99.6 9.2E-15 3.2E-19 162.9 19.8 96 99-203 24-145 (559)
2 1b63_A MUTL; DNA mismatch repa 99.6 6.5E-15 2.2E-19 154.5 14.3 88 107-203 23-118 (333)
3 2o1u_A Endoplasmin; GRP94, HSP 99.6 1.8E-14 6.3E-19 163.1 17.2 96 99-203 42-166 (666)
4 2ioq_A Chaperone protein HTPG; 99.6 1E-14 3.4E-19 164.5 14.6 105 87-203 15-145 (624)
5 3na3_A DNA mismatch repair pro 99.5 2.5E-13 8.4E-18 143.8 12.6 90 107-204 27-123 (348)
6 3h4l_A DNA mismatch repair pro 99.5 5.7E-13 2E-17 141.9 15.3 89 107-203 24-119 (367)
7 2cg9_A ATP-dependent molecular 99.5 5.8E-12 2E-16 143.0 24.1 97 98-203 22-142 (677)
8 1h7s_A PMS1 protein homolog 2; 99.4 1.7E-12 5.8E-17 138.1 14.0 89 107-203 33-128 (365)
9 2wer_A ATP-dependent molecular 99.4 1.9E-13 6.4E-18 135.5 5.6 96 99-203 23-142 (220)
10 2ior_A Chaperone protein HTPG; 99.4 2E-13 6.8E-18 137.0 4.8 91 110-203 49-165 (235)
11 3t0h_A Heat shock protein HSP 99.4 2.5E-13 8.7E-18 136.0 4.8 96 99-203 29-148 (228)
12 1yc1_A HSP 86, heat shock prot 99.4 3.3E-13 1.1E-17 137.8 5.3 96 99-203 65-184 (264)
13 3peh_A Endoplasmin homolog; st 99.4 9.8E-13 3.3E-17 135.3 8.7 96 99-203 43-163 (281)
14 3o0i_A HSP90AA1 protein; HSP90 99.3 3.7E-13 1.3E-17 137.0 4.6 105 87-203 48-176 (256)
15 2gqp_A Endoplasmin; GRP94, HSP 99.3 3.5E-13 1.2E-17 135.4 4.3 96 99-203 29-153 (236)
16 3nmq_A Heat shock protein HSP 99.3 7.5E-13 2.6E-17 133.5 6.2 106 86-203 26-155 (239)
17 1qy5_A Endoplasmin; GRP94, NEC 99.3 7.2E-13 2.5E-17 135.7 3.5 97 98-203 24-149 (269)
18 3ied_A Heat shock protein; HSP 99.2 2E-11 6.7E-16 124.3 7.7 67 131-200 119-197 (272)
19 4duh_A DNA gyrase subunit B; s 98.9 1.8E-09 6E-14 107.7 5.7 111 86-203 13-138 (220)
20 3fv5_A DNA topoisomerase 4 sub 98.8 3.6E-09 1.2E-13 103.9 4.8 87 110-202 19-119 (201)
21 1kij_A DNA gyrase subunit B; t 98.7 2.6E-08 8.9E-13 106.8 10.8 109 86-202 11-134 (390)
22 1s16_A Topoisomerase IV subuni 98.6 2.9E-08 9.8E-13 106.5 6.0 106 86-202 13-133 (390)
23 1ei1_A DNA gyrase B, GYRB; ATP 98.6 2.3E-08 7.9E-13 107.3 5.0 111 85-202 11-136 (391)
24 4emv_A DNA topoisomerase IV, B 98.5 7.7E-08 2.7E-12 96.2 4.0 121 71-203 8-142 (226)
25 3cwv_A DNA gyrase, B subunit, 98.3 5.3E-07 1.8E-11 96.1 5.0 105 87-203 10-120 (369)
26 3lnu_A Topoisomerase IV subuni 98.2 4.9E-07 1.7E-11 97.5 4.7 117 72-203 22-153 (408)
27 1mu5_A Type II DNA topoisomera 98.2 9.2E-07 3.2E-11 97.0 6.0 96 108-203 32-136 (471)
28 1zxm_A TOPO IIA ATPase, DNA to 98.2 9.4E-07 3.2E-11 95.2 5.3 91 107-202 51-156 (400)
29 2zbk_B Type 2 DNA topoisomeras 98.1 1.5E-06 5.2E-11 96.6 5.5 96 108-203 31-135 (530)
30 1id0_A PHOQ histidine kinase; 98.1 4.3E-06 1.5E-10 74.8 6.1 86 109-202 45-133 (152)
31 1i58_A Chemotaxis protein CHEA 98.1 1.8E-06 6E-11 80.8 3.7 90 111-202 50-177 (189)
32 1ysr_A Sensor-type histidine k 98.0 5.1E-06 1.7E-10 74.5 5.4 88 109-202 47-137 (150)
33 2c2a_A Sensor histidine kinase 98.0 2.7E-06 9.4E-11 83.1 3.5 94 108-203 138-237 (258)
34 4ew8_A Sensor protein DIVL; si 98.0 5.1E-06 1.8E-10 81.1 5.3 89 109-202 156-244 (268)
35 3a0y_A Sensor protein; ATP-LID 98.0 7.8E-06 2.7E-10 72.8 5.5 86 108-201 47-136 (152)
36 2btz_A Pyruvate dehydrogenase 97.9 8.8E-06 3E-10 85.9 6.6 93 108-202 231-338 (394)
37 1r62_A Nitrogen regulation pro 97.9 3.6E-06 1.2E-10 75.5 3.0 88 109-201 49-147 (160)
38 2q8g_A [pyruvate dehydrogenase 97.9 8.3E-06 2.8E-10 86.6 6.2 93 108-202 243-351 (407)
39 2q2e_B Type 2 DNA topoisomeras 97.9 4.8E-06 1.6E-10 94.2 3.9 96 107-203 36-140 (621)
40 2e0a_A Pyruvate dehydrogenase 97.9 1.2E-05 4.2E-10 84.9 6.0 93 108-202 230-338 (394)
41 1bxd_A ENVZ(290-450), protein 97.8 7.9E-06 2.7E-10 74.3 3.8 89 108-202 47-138 (161)
42 1b3q_A Protein (chemotaxis pro 97.8 1.3E-05 4.4E-10 84.8 5.9 91 111-203 109-237 (379)
43 3d36_A Sporulation kinase B; G 97.8 1.5E-05 5.2E-10 76.1 5.9 88 108-202 123-213 (244)
44 1y8o_A [pyruvate dehydrogenase 97.8 1.2E-05 4.2E-10 85.8 5.4 93 108-202 253-362 (419)
45 3sl2_A Sensor histidine kinase 97.8 7.8E-06 2.7E-10 75.6 3.1 93 109-202 44-140 (177)
46 3jz3_A Sensor protein QSEC; he 97.8 6.4E-06 2.2E-10 77.6 2.5 87 109-204 118-207 (222)
47 1gkz_A [3-methyl-2-oxobutanoat 97.8 9.9E-06 3.4E-10 85.2 3.8 93 108-202 238-361 (388)
48 1pvg_A DNA topoisomerase II; G 97.7 3.5E-05 1.2E-09 83.4 6.4 89 108-201 64-167 (418)
49 3a0r_A Sensor protein; four he 97.7 1.5E-05 5.1E-10 80.4 3.1 89 108-201 244-333 (349)
50 1th8_A Anti-sigma F factor; SP 97.6 5E-05 1.7E-09 68.1 5.2 86 109-202 40-127 (145)
51 3ehg_A Sensor kinase (YOCF pro 97.6 3.7E-05 1.3E-09 67.8 3.7 72 109-201 41-115 (128)
52 3ttz_A DNA gyrase subunit B; p 97.5 6.4E-05 2.2E-09 73.6 4.8 81 107-203 30-111 (198)
53 3ehh_A Sensor kinase (YOCF pro 97.4 0.00011 3.8E-09 69.5 5.1 75 109-201 131-205 (218)
54 3zxo_A Redox sensor histidine 97.3 0.00014 5E-09 63.3 4.2 70 108-202 43-115 (129)
55 3zxq_A Hypoxia sensor histidin 97.2 0.00018 6.3E-09 62.3 3.1 70 108-202 39-111 (124)
56 4fpp_A Phosphotransferase; fou 96.9 0.00053 1.8E-08 67.7 3.6 85 109-201 147-236 (247)
57 4gfh_A DNA topoisomerase 2; to 96.8 0.0013 4.5E-08 79.2 6.8 88 109-201 60-162 (1177)
58 1ixm_A SPO0B, protein (sporula 94.2 0.026 8.8E-07 54.8 3.4 58 112-169 109-171 (192)
59 3ke6_A Protein RV1364C/MT1410; 91.2 0.16 5.6E-06 53.8 4.8 72 111-200 300-373 (399)
60 1y6z_A Heat shock protein, put 25.1 1.3E+02 0.0043 30.5 6.7 63 411-476 70-133 (263)
61 1usu_A Heat shock protein HSP8 23.6 2E+02 0.007 29.0 7.9 63 411-476 68-131 (260)
62 2gq0_A Chaperone protein HTPG; 22.2 1.9E+02 0.0064 29.9 7.5 62 411-475 66-128 (303)
63 2ekm_A Hypothetical protein ST 20.3 1.1E+02 0.0036 28.9 4.6 37 435-489 125-161 (162)
No 1
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.62 E-value=9.2e-15 Score=162.94 Aligned_cols=96 Identities=28% Similarity=0.381 Sum_probs=73.3
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
|+++.. .+|+|||+||+||.. ..++.+.|++..+. +...|+|.|||+||+++++.+.+
T Consensus 24 lYsn~~------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~ 95 (559)
T 1y4s_A 24 LYSNKE------IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLG 95 (559)
T ss_dssp TGGGTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHS
T ss_pred cCCChH------HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHh
Confidence 666654 699999999999961 12444455555432 34689999999999999998765
Q ss_pred hccccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.+. +...||+||+||.+ +|.+|.+++|.||..+
T Consensus 96 tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (559)
T 1y4s_A 96 TIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (559)
T ss_dssp CCSCCCCCCTTCC--------CCCCSSCCCSGGG-HHHHEEEEEEEEECSS
T ss_pred hhcccccHHHHHHhhccccccccccCCCCcchhh-hhhccCeEEEEEcCCC
Confidence 58888642 35689999999975 6778999999999865
No 2
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.59 E-value=6.5e-15 Score=154.55 Aligned_cols=88 Identities=22% Similarity=0.351 Sum_probs=69.9
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-------CCCCcc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK-------ANKTIG 178 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~-------~~~~IG 178 (621)
..+..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||.||+++++..++. +++| |. ....+|
T Consensus 23 ~~~~~~v~ELi~NaidA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ts-K~~~~~d~~~~~~~G 95 (333)
T 1b63_A 23 ERPASVVKELVENSLDA---GATRIDIDIER---GGAKLIRIRDNGCGIKKDELALALARHATS-KIASLDDLEAIISLG 95 (333)
T ss_dssp SSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGHHHHHSTTCCS-SCCSHHHHHTCCSSC
T ss_pred hCHHHHHHHHHHHHHHC---CCCeEEEEEEe---CCceEEEEEEcCCCcCHHHHHHhhhccccc-CccccchhhhccccC
Confidence 35668999999999999 89999988864 2446899999999999999999885 6555 43 235789
Q ss_pred cccccccccccccCCEEEEEeeeCC
Q 007030 179 QYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 179 rfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.+|+|+.+ ...++ +++|.|++.+
T Consensus 96 ~~G~gl~s-i~~vs-~l~v~s~~~~ 118 (333)
T 1b63_A 96 FRGEALAS-ISSVS-RLTLTSRTAE 118 (333)
T ss_dssp CSSCHHHH-HHTTS-EEEEEEECTT
T ss_pred ccccchhh-hhcCC-cEEEEEecCC
Confidence 99999843 33344 8999999865
No 3
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.58 E-value=1.8e-14 Score=163.12 Aligned_cols=96 Identities=29% Similarity=0.374 Sum_probs=63.0
Q ss_pred ccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
||++.. .+|.|||.||+||.. ..++.+.|.+..+. +...|+|.|||+||+++++...|
T Consensus 42 LYsn~e------ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~ 113 (666)
T 2o1u_A 42 LYKNKE------IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLG 113 (666)
T ss_dssp TSSSCT------THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTT
T ss_pred ccCCch------HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHHh
Confidence 777765 589999999999962 12544556665532 34689999999999999998766
Q ss_pred hccccccc---------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK---------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~---------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++++|.+. +...||+||+||++ +|.++.+++|.||+.+
T Consensus 114 tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfyS-af~vAdkV~V~Sr~~~ 166 (666)
T 2o1u_A 114 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYS-AFLVADKVIVTSKHNN 166 (666)
T ss_dssp C-------------------------------CTTGG-GGGTEEEEEEEEECTT
T ss_pred hhcccccHHHHHHhhhcccccccchhhccCCCcHHHh-HHHhcCEEEEEEeeCC
Confidence 47777332 33579999999975 4889999999999864
No 4
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.57 E-value=1e-14 Score=164.47 Aligned_cols=105 Identities=27% Similarity=0.330 Sum_probs=75.5
Q ss_pred CcccccccccccccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCC
Q 007030 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGG 153 (621)
Q Consensus 87 ~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~ 153 (621)
.+++.+.-+ |+++.. .+|+|||+||+||.. ..++.+.|++..+. +...|+|.|||+
T Consensus 15 ~Ll~ll~~~---lYsn~~------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGi 83 (624)
T 2ioq_A 15 QLLHLMIHS---LYSNKE------IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGV 83 (624)
T ss_dssp CCHHHHHHH---HSSCTT------HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEEEEECSC
T ss_pred HHHHHHHHh---cCCChH------HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEEEEECCC
Confidence 344444423 677654 689999999999961 12544455555432 347899999999
Q ss_pred CCCHHHHHHhh-hccccccc------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 154 GMDPESLRKCM-SLGYSTKK------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
||+++++..++ ++|+|.+. +...||+||+||.+ +|.++.+++|.||..+
T Consensus 84 GMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS-~f~VadkV~V~Sr~~~ 145 (624)
T 2ioq_A 84 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 145 (624)
T ss_dssp CCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHH-HHHHEEEEEEEEECTT
T ss_pred CCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHH-HHhcCCeEEEEECCCC
Confidence 99999998765 58888642 34579999999975 6778999999999865
No 5
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.46 E-value=2.5e-13 Score=143.77 Aligned_cols=90 Identities=20% Similarity=0.255 Sum_probs=69.6
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------CCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------NKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~~~IGr 179 (621)
..+..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||+||+++++..++..++++|.. ...+|+
T Consensus 27 ~~~~~vv~eLv~NAidA---~a~~I~I~i~~---~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s~Gf 100 (348)
T 3na3_A 27 QRPANAIKEMIENCLDA---KSTSIQVIVKE---GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASISTYGF 100 (348)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC---------CC
T ss_pred cCHHHHHHHHHHHHHHc---CCCEEEEEEEe---CCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhccccCCc
Confidence 34567999999999999 89999998853 345679999999999999999988866666642 356899
Q ss_pred ccccccccccccCCEEEEEeeeCCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~~ 204 (621)
+|.|+. +...++ +++|.||+.++
T Consensus 101 rGeaL~-Si~avs-~l~v~sr~~~~ 123 (348)
T 3na3_A 101 RGEALA-SISHVA-HVTITTKTADG 123 (348)
T ss_dssp TTCHHH-HHHHSS-EEEEEEECTTC
T ss_pred CChHHH-Hhhccc-EEEEEEEECCC
Confidence 999984 444555 89999998753
No 6
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.7e-13 Score=141.88 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=68.9
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-------CCCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-------ANKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-------~~~~IGr 179 (621)
..+..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||+||+++++..++..++++|. ....+|.
T Consensus 24 ~~~~~vv~eLv~NaiDA---~a~~I~I~i~~---~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t~Gf 97 (367)
T 3h4l_A 24 TDLTTAVKELVDNSIDA---NANQIEIIFKD---YGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQTLGF 97 (367)
T ss_dssp CSHHHHHHHHHHHHHHT---TCSEEEEEEET---TTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCEEEE
T ss_pred cCHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhccCc
Confidence 34557999999999999 89999888842 35678999999999999999998875555554 1246788
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.|.|+. +...++ +++|.||+.+
T Consensus 98 rGeaL~-Si~avS-~l~V~sr~~~ 119 (367)
T 3h4l_A 98 RGEALS-SLCGIA-KLSVITTTSP 119 (367)
T ss_dssp TTHHHH-HHHHSS-EEEEEEESST
T ss_pred cchHHH-HhhccC-EEEEEEEECC
Confidence 899984 455566 7999999864
No 7
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.45 E-value=5.8e-12 Score=142.98 Aligned_cols=97 Identities=25% Similarity=0.293 Sum_probs=74.2
Q ss_pred cccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 007030 98 FLHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (621)
Q Consensus 98 fLhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (621)
.||||.. .+|.|||.||+||.. ..+..+.|.|..+. +...|+|.|||+||+++++.++|
T Consensus 22 sLYsnke------ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 22 TVYSNKE------IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp SCCSCTT------HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHGGG
T ss_pred hCCCCch------HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeC--CCCEEEEEECCCCCCHHHHHHHH
Confidence 3787765 589999999999973 12333455554432 34689999999999999998766
Q ss_pred -hccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 -SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 -~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++++|.+. +...||+||+||++| |..+.+++|.||+.+
T Consensus 94 ~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySa-f~vadkV~V~Sk~~~ 142 (677)
T 2cg9_A 94 GTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSL-FLVADRVQVISKSND 142 (677)
T ss_dssp SSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGG-GGTEEEEEEEEECTT
T ss_pred HhHhccccHHHHHhhhcccchhhcCCCCchhHHH-hhcCcEEEEEEccCC
Confidence 58877432 346899999999755 779999999999864
No 8
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.40 E-value=1.7e-12 Score=138.07 Aligned_cols=89 Identities=22% Similarity=0.263 Sum_probs=66.0
Q ss_pred ccHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-cccccccC------CCCccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKKA------NKTIGQ 179 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~~------~~~IGr 179 (621)
..+..+|.|||+||+|| +|+.|.|.+.. ++...|+|.|||.||+++++..++. |.+|+... ...+|.
T Consensus 33 ~~~~~vl~eLv~NAiDA---~a~~I~I~i~~---~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s~G~ 106 (365)
T 1h7s_A 33 LSLSTAVKELVENSLDA---GATNIDLKLKD---YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVETFGF 106 (365)
T ss_dssp CCHHHHHHHHHHHHHHT---TCSEEEEEEEG---GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEEESS
T ss_pred hhHHHHHHHHHHHHHHC---CCCEEEEEEEe---CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccccCC
Confidence 45668999999999999 89998888864 2456899999999999999999876 54443221 134788
Q ss_pred ccccccccccccCCEEEEEeeeCC
Q 007030 180 YGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 180 fGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+|+|+. +...++ +++|.|++.+
T Consensus 107 rG~gl~-si~~vs-~v~v~t~~~~ 128 (365)
T 1h7s_A 107 RGEALS-SLCALS-DVTISTCHAS 128 (365)
T ss_dssp SSSHHH-HHHHHS-EEEEEEECTT
T ss_pred CCchhh-hhhhhc-cEEEEEccCC
Confidence 899874 344566 9999999865
No 9
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.39 E-value=1.9e-13 Score=135.53 Aligned_cols=96 Identities=25% Similarity=0.301 Sum_probs=73.8
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
|+++.. .+|.|||+||+||... ....+.|.+..+. +...|+|.|||+||+++++.++|
T Consensus 23 lys~~~------~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~l~ 94 (220)
T 2wer_A 23 VYSNKE------IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSGIGMTKAELINNLG 94 (220)
T ss_dssp CCSSTT------HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEG--GGTEEEEEECSCCCCHHHHHHHTT
T ss_pred ccCCch------HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECC--CCCEEEEEEcCCCCCHHHHHHHHH
Confidence 677664 6999999999999531 1234556655432 45689999999999999998766
Q ss_pred hccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.++ +...+|+||+||+ +++.++.+++|.|++.+
T Consensus 95 ~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~-s~~~~~~~v~v~S~~~~ 142 (220)
T 2wer_A 95 TIAKSGTKAFMEALSAGADVSMIGQFGVGFY-SLFLVADRVQVISKSND 142 (220)
T ss_dssp TSCCTTHHHHHHHHTTTCCGGGGGGGTCGGG-GGGGTEEEEEEEEECTT
T ss_pred hHhcccchhHHHHhhccCCcccCCccchhHH-HhhhcCCeeEEEEecCC
Confidence 58887532 4568999999996 55889999999999864
No 10
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.37 E-value=2e-13 Score=136.97 Aligned_cols=91 Identities=26% Similarity=0.361 Sum_probs=70.8
Q ss_pred HHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hccccccc---
Q 007030 110 FGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTKK--- 172 (621)
Q Consensus 110 f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K~--- 172 (621)
..+|.|||+||+||.. ..++.+.|.+..+. +...|+|.|||+||+++++..+| ++|+|.+.
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~--~~~~i~I~DnG~GMs~edl~~~~~~ia~S~~~~f~ 126 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 126 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEET--TTTEEEEEECSSCCCHHHHHHHHTTCCCTTHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcC--CceEEEEEECCCCCCHHHHHHHHHHHccccccchh
Confidence 3699999999999952 12555556665432 34579999999999999998765 68888642
Q ss_pred ---------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 173 ---------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 173 ---------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+...+|+||+||++ +|.++.+++|.|+..+
T Consensus 127 ~~l~~~~~~~~~~iG~fGiG~~S-~~~~~~~v~V~Sr~~~ 165 (235)
T 2ior_A 127 ESLGSDQAKDSQLIGQFGVGFYS-AFIVADKVTVRTRAAG 165 (235)
T ss_dssp HHCCSCHHHHHHHHTTCCCCGGG-GGGTEEEEEEEEECTT
T ss_pred hhhccccccccccCCCCChhHHH-HHhCcCeEEEEEecCC
Confidence 24579999999985 4889999999999864
No 11
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.36 E-value=2.5e-13 Score=136.03 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=73.9
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
||++.. .+|.|||.||+||... ....+.|.+..+. +...|+|.|||.||+++++..++
T Consensus 29 lYs~~~------~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~--~~~~i~V~DnG~GMs~edl~~~l~ 100 (228)
T 3t0h_A 29 FYSNKE------IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLG 100 (228)
T ss_dssp CCSCTT------HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHTGGG
T ss_pred hcCCcH------HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeC--CeeEEEEEeCCCCCCHHHHHHHHH
Confidence 677754 6899999999999631 0124566665432 56789999999999999998765
Q ss_pred hccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++++|.+. +...+|+||+||+++ |.++.+++|.||+.+
T Consensus 101 ~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~-~~vad~v~V~Sr~~~ 148 (228)
T 3t0h_A 101 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 148 (228)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhccccchhhhhhhcccCCcccCCCCChhHHHH-hccCCEEEEEEecCC
Confidence 57777542 456899999999865 669999999999864
No 12
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.36 E-value=3.3e-13 Score=137.82 Aligned_cols=96 Identities=23% Similarity=0.371 Sum_probs=74.3
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
|+++.. .+|.|||+||+||... ..+.+.|.+..+. +...|+|.|||+||+++++..+|
T Consensus 65 lys~~~------~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~--~~~~I~I~DnG~GMs~edL~~~l~ 136 (264)
T 1yc1_A 65 FYSNKE------IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGIGMTKADLINNLG 136 (264)
T ss_dssp CCSCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred ccCCHH------HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECC--CeeEEEEEECCcCCCHHHHHHHHH
Confidence 566543 6999999999999530 1256777776532 45689999999999999997765
Q ss_pred hccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.+. +...+|+||+||+++ |.++.+++|.|++.+
T Consensus 137 ~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~-f~va~~v~V~Sr~~~ 184 (264)
T 1yc1_A 137 TIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 184 (264)
T ss_dssp SCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGH-HHHEEEEEEEEECTT
T ss_pred hhccccchhhhhhhccccchhhcCCCCCCcccc-ccCCCEEEEEEecCC
Confidence 58887643 356899999999855 569999999999864
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.35 E-value=9.8e-13 Score=135.34 Aligned_cols=96 Identities=23% Similarity=0.351 Sum_probs=73.9
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
|||+.. .+|+|||.||.||... ....+.|.+..+. +...|+|.|||.||+++++.+.|
T Consensus 43 lYsn~~------ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~--~~~tLtI~DNGiGMt~edL~~~Lg 114 (281)
T 3peh_A 43 LYTQKE------VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANK--EKNILSITDTGIGMTKVDLINNLG 114 (281)
T ss_dssp HTTCGG------GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred ccCChH------HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcC--CCcEEEEEeCCCCCCHHHHHHHHH
Confidence 777764 5899999999999631 1233556665543 35689999999999999998765
Q ss_pred hcccccc-----------cCCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTK-----------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K-----------~~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.+ .+...||+||+||++| |.+|.+++|.|+..+
T Consensus 115 tIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySa-f~vadkV~V~Sk~~~ 163 (281)
T 3peh_A 115 TIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSA-FLVADKVIVYTKNND 163 (281)
T ss_dssp HHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred HHHhHhhhhHHHhhhccccccccccccCccchhh-ccccCEEEEEEecCC
Confidence 4777642 2457899999999765 679999999999864
No 14
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.34 E-value=3.7e-13 Score=136.96 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=78.5
Q ss_pred CcccccccccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCC
Q 007030 87 GSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGG 153 (621)
Q Consensus 87 ~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~ 153 (621)
.+++.+.=+ ||++.. .+|.|||.||+||... ....+.|.+..+. +...|+|.|||+
T Consensus 48 ~Ll~ll~~~---lYs~~~------iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~I~I~DnG~ 116 (256)
T 3o0i_A 48 QLMSLIINT---FYSNKE------IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNK--QDRTLTIVDTGI 116 (256)
T ss_dssp HHHHHHHHS---CCSCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECSC
T ss_pred HHHHHHHHh---ccCCcH------HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcC--CceEEEEecCCC
Confidence 445555433 777764 6899999999999631 1124566665532 567899999999
Q ss_pred CCCHHHHHHhh-hccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 154 GMDPESLRKCM-SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 154 GMs~e~l~~~~-~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
||+++++..++ ++++|.++ +...+|+||+||+++ |.++.+++|.||+.+
T Consensus 117 GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~-f~Vadkv~V~Sr~~~ 176 (256)
T 3o0i_A 117 GMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVTVITKHND 176 (256)
T ss_dssp CCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHh-hccCCeEEEEEcCCC
Confidence 99999997655 57776542 457899999999866 669999999999864
No 15
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.34 E-value=3.5e-13 Score=135.41 Aligned_cols=96 Identities=30% Similarity=0.367 Sum_probs=68.4
Q ss_pred ccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-
Q 007030 99 LHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM- 164 (621)
Q Consensus 99 LhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~- 164 (621)
|+++. ..+|+|||+||+||... .+..+.|.+..+. +...|+|.|||+||+++++.++|
T Consensus 29 lys~~------~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~i~I~DnG~GMt~edl~~~l~ 100 (236)
T 2gqp_A 29 LYKNK------EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNLG 100 (236)
T ss_dssp TTTCT------THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHH
T ss_pred hcCCc------hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcC--CCCEEEEEECCcCCCHHHHHHHHh
Confidence 66664 36999999999999530 1233455555432 34689999999999999998765
Q ss_pred hccccccc---------------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKK---------------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~---------------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.+. +...||+||+||+ |+|.++.+++|.|+..+
T Consensus 101 ~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~-S~f~va~~v~V~Sr~~~ 153 (236)
T 2gqp_A 101 TIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFY-SAFLVADKVIVTSKHNN 153 (236)
T ss_dssp CC---------------------CHHHHHHTTCGGG-GGGGTEEEEEEEEECTT
T ss_pred hhcccccHhHHHHhhccccccccchhhcCCCCcchh-hHhhcCCEEEEEEeCCC
Confidence 58887532 2246899999997 56889999999999864
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.33 E-value=7.5e-13 Score=133.49 Aligned_cols=106 Identities=24% Similarity=0.322 Sum_probs=78.5
Q ss_pred cCcccccccccccccccccccccHHHHHHHhhccchhhhhC-------------CCceEEEEEEEccCCCCCeEEEEECC
Q 007030 86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDG 152 (621)
Q Consensus 86 ~~~l~~~~~~p~fLhsnsTsh~~~f~AIaELVDNSiDA~~~-------------gAt~V~I~i~~~~~~~~~~I~I~DNG 152 (621)
..+++.+.-+ ||++.. .+|.|||.||.||... ....+.|.+..+. ....|+|.|||
T Consensus 26 ~~ll~ll~~~---lYs~~~------ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~--~~~~L~I~DnG 94 (239)
T 3nmq_A 26 AQLMSLIINT---FYSNKE------IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNP--QERTLTLVDTG 94 (239)
T ss_dssp HHHHHHHHHS---CCCCTT------HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEET--TTTEEEEEECS
T ss_pred HHHHHHHHHh---ccCCcH------HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeC--CccEEEEEeCC
Confidence 3455555533 788764 5899999999999631 1123566665543 45789999999
Q ss_pred CCCCHHHHHHh-hhccccccc----------CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 153 GGMDPESLRKC-MSLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 153 ~GMs~e~l~~~-~~~G~S~K~----------~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.||+++++.+. .++++|.++ +...||+||+||+++ |.++.+++|.||..+
T Consensus 95 iGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySa-f~vadkv~V~Sk~~~ 155 (239)
T 3nmq_A 95 IGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSA-YLVAEKVVVITKHND 155 (239)
T ss_dssp CCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGG-GGTEEEEEEEEECTT
T ss_pred CCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccc-cccCCEEEEEEeeCC
Confidence 99999999654 457776532 456899999999865 779999999999854
No 17
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.29 E-value=7.2e-13 Score=135.74 Aligned_cols=97 Identities=29% Similarity=0.362 Sum_probs=73.5
Q ss_pred cccccccccccHHHHHHHhhccchhhhh-------------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 007030 98 FLHSNATSHKWAFGAIAELLDNAVDEVQ-------------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (621)
Q Consensus 98 fLhsnsTsh~~~f~AIaELVDNSiDA~~-------------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (621)
.||+|.. .+|+|||+||+||.. .....+.|.+..+. +...|+|.|||+||+++++.+.|
T Consensus 24 ~lYsn~e------ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~--~~~~l~I~DnGiGMt~edl~~~l 95 (269)
T 1qy5_A 24 SLYKNKE------IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDK--EKNLLHVTDTGVGMTREELVKNL 95 (269)
T ss_dssp HHTTCTT------HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHH
T ss_pred hccCCch------HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcC--CceEEEEEECCCCCCHHHHHHHh
Confidence 3777764 589999999999963 11244566665532 45689999999999999997655
Q ss_pred -hcccccc---------------cCCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 -SLGYSTK---------------KANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 -~~G~S~K---------------~~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
++|+|.+ .+...||+||+||+++ |.++.+++|.|+..+
T Consensus 96 ~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySa-f~va~~v~V~Sk~~~ 149 (269)
T 1qy5_A 96 GTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSA-FLVADKVIVTSKHNN 149 (269)
T ss_dssp HSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGG-GGTEEEEEEEEECTT
T ss_pred hhhcccccHHHHHhhhhcccccccchhhcCCccccHHHH-hhccceEEEEEEecC
Confidence 5887732 2334689999999754 779999999999864
No 18
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.19 E-value=2e-11 Score=124.26 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=53.3
Q ss_pred EEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh-hcccccc-----------cCCCCcccccccccccccccCCEEEEE
Q 007030 131 VKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM-SLGYSTK-----------KANKTIGQYGNGFKTSTMRLGADVIVF 198 (621)
Q Consensus 131 V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~-~~G~S~K-----------~~~~~IGrfGiGlKsAs~~lG~~v~V~ 198 (621)
+.|.|..+. ....|+|.|||.||+++++.+.| ++++|.+ .+...||+||+||++ +|.+|.+++|.
T Consensus 119 l~I~I~~Dk--~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFyS-aFmVAdkV~V~ 195 (272)
T 3ied_A 119 LIIKIKPDK--EKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYS-SFLVSNRVEVY 195 (272)
T ss_dssp CCEEEEEET--TTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGG-GGGTEEEEEEE
T ss_pred cEEEEEEeC--CCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceehe-eeccCCEEEEE
Confidence 456665543 45689999999999999999866 5777653 235689999999986 46799999999
Q ss_pred ee
Q 007030 199 SR 200 (621)
Q Consensus 199 Sr 200 (621)
||
T Consensus 196 Sk 197 (272)
T 3ied_A 196 TK 197 (272)
T ss_dssp EE
T ss_pred Ec
Confidence 99
No 19
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.85 E-value=1.8e-09 Score=107.67 Aligned_cols=111 Identities=21% Similarity=0.233 Sum_probs=73.4
Q ss_pred cCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHH---
Q 007030 86 QGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--- 160 (621)
Q Consensus 86 ~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l--- 160 (621)
...++|++..|. |+-+... ...+..++.||||||+|+..++ |+.|.|.+.. + ..|+|.|||.||+.+..
T Consensus 13 l~~le~vr~rPgmYiG~~~~-~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~---~--g~i~V~DnGrGIp~~~~~~~ 86 (220)
T 4duh_A 13 LKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPEE 86 (220)
T ss_dssp --CHHHHHHSTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECT---T--SCEEEEECSSCCCCSEETTT
T ss_pred echhHHHHhCCceEECCCCC-cccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeC---C--CcEEEEECCcCccccccccc
Confidence 567888888774 3333322 2467789999999999997655 8888888753 1 37999999999999863
Q ss_pred -----HHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 161 -----RKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 161 -----~~~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
+-+|. +-.+.|. -....|+.|+|++ +.-.+...++|.+++.+
T Consensus 87 ~~~~~e~i~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNAlS~~l~v~v~r~g 138 (220)
T 4duh_A 87 GVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQREG 138 (220)
T ss_dssp TEEHHHHHHHSTTCSSCCCTTC--------CCCHH-HHHHTEEEEEEEEEETT
T ss_pred CcchhhheeeecccCCCcCCCccccccCccceecc-hhcccccceEEEEEECC
Confidence 34453 3333443 2357899999995 56668889999998853
No 20
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.77 E-value=3.6e-09 Score=103.90 Aligned_cols=87 Identities=31% Similarity=0.272 Sum_probs=56.0
Q ss_pred HHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH--------HHHhh-hccccccc----CCC
Q 007030 110 FGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--------LRKCM-SLGYSTKK----ANK 175 (621)
Q Consensus 110 f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--------l~~~~-~~G~S~K~----~~~ 175 (621)
..++.|||+||+||..++ |+.|.|.+.. + ..|+|.|||.||+.++ ++.++ .+-.++|. -..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~---~--g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~~~~~~~ 93 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQF 93 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC-------------
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC---C--CEEEEEECCCCcCcccccccCcchhheeeeeeccccCcCCCcccc
Confidence 569999999999998877 9999888742 2 3899999999999988 34433 34444443 134
Q ss_pred CcccccccccccccccCCEEEEEeeeC
Q 007030 176 TIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 176 ~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
..|+.|.|++ +...++..++|.|++.
T Consensus 94 s~GfrGegls-sinalS~~l~v~t~~~ 119 (201)
T 3fv5_A 94 SGGLHGVGIS-VVNALSKRVEVNVRRD 119 (201)
T ss_dssp --------CH-HHHHTEEEEEEEEEET
T ss_pred cCcccceecc-hhhcccceEEEEEEec
Confidence 6899999995 4566778999999975
No 21
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.74 E-value=2.6e-08 Score=106.80 Aligned_cols=109 Identities=26% Similarity=0.244 Sum_probs=77.3
Q ss_pred cCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHH-
Q 007030 86 QGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRK- 162 (621)
Q Consensus 86 ~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~- 162 (621)
...+++++..|. |.-+.. ..-....|.|||+||+|+...+ ++.|.|.+.. + ..|+|.|||.||+.+++.+
T Consensus 11 l~~le~vr~rpgmyiGs~~--~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~---~--~~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 11 LKGLEGVRHRPAMYIGGTG--VEGYHHLFKEILDNAVDEALAGYATEILVRLNE---D--GSLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp CCTTHHHHHCTHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECT---T--SCEEEEECSSCCCCSEETTT
T ss_pred cchhHHHhcCCCcEEccCC--cchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEc---C--CEEEEEEcCCCCCHHHhhhc
Confidence 566788887774 444433 2444568999999999996443 7778887743 1 3899999999999998765
Q ss_pred -------hhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeC
Q 007030 163 -------CMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 163 -------~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
+|. +-..+|. .....|..|+|++ ++..+...++|.|++.
T Consensus 84 ~~~~~e~if~~~~~~~kf~~~~~~~s~G~~G~Gls-~v~als~~~~v~t~~~ 134 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGAS-VVNALSEWTVVEVFRE 134 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGGSSCCCCSCSSTTSHH-HHHHTEEEEEEEEEET
T ss_pred cccchhhheeeeeecccccCccccccCCCCCccee-eecccccceEEEEecC
Confidence 564 3333332 1235689999995 5567888899999974
No 22
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.60 E-value=2.9e-08 Score=106.55 Aligned_cols=106 Identities=29% Similarity=0.286 Sum_probs=79.8
Q ss_pred cCccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH----
Q 007030 86 QGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES---- 159 (621)
Q Consensus 86 ~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~---- 159 (621)
...++|++.-| +|.-|... -.++.||||||+|+..++ |+.|.|.+.. + ..|+|.|||.||+.++
T Consensus 13 L~gle~vr~RPgmYiGs~~~-----~~lv~ElvdNsiD~a~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~~ 82 (390)
T 1s16_A 13 LTGLEPVRRRPGMYTDTTRP-----NHLGQEVIDNSVDEALAGHAKRVDVILHA---D--QSLEVIDDGRGMPVDIHPEE 82 (390)
T ss_dssp CCTTHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEECSSCCCCSBCTTT
T ss_pred cchhHHHhhCCceeecCCcH-----HHHHHHHHHHHHHHHhcCCCCEEEEEEec---C--CEEEEEECCCCcCccccccc
Confidence 56788888877 45545444 368999999999997766 8998888853 2 3899999999999988
Q ss_pred ----HHHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeC
Q 007030 160 ----LRKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 160 ----l~~~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
++.+|. +-.++|. -....|+.|+|++ +.-.++..++|.|++.
T Consensus 83 ~~~~~e~v~~~lhagsKf~~~~~~~sgGl~GvGls-~vnalS~~l~v~~~r~ 133 (390)
T 1s16_A 83 GVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGIS-VVNALSKRVEVNVRRD 133 (390)
T ss_dssp CSBHHHHHHHCTTEESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred CcchhhheeeeecccCCcCCCcccccCCccccchH-HHHHhhcccEEEEEEC
Confidence 666675 3444443 1346899999995 4566778899999974
No 23
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.59 E-value=2.3e-08 Score=107.32 Aligned_cols=111 Identities=22% Similarity=0.255 Sum_probs=82.1
Q ss_pred CcCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHH---
Q 007030 85 VQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--- 159 (621)
Q Consensus 85 ~~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--- 159 (621)
-...++|++.-|. |.-|... ..-+..++.||||||+||..++ |+.|.|.+.. + ..|+|.|||.||+.++
T Consensus 11 ~L~gle~vrkRPgmYiGst~~-~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~---~--g~I~V~DnG~GIp~~~~~~ 84 (391)
T 1ei1_A 11 VLKGLDAVRKRPGMYIGDTDD-GTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHA---D--NSVSVQDDGRGIPTGIHPE 84 (391)
T ss_dssp ECCTTHHHHHCTHHHHCCSSS-SHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECT---T--SCEEEEECSSCCCCSBCTT
T ss_pred ECchhHHHHcCCCeEECCCCC-CcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeC---C--CEEEEEECCCCcccCcccc
Confidence 3567888888774 4333332 1267789999999999998777 9988888853 2 3899999999999988
Q ss_pred -----HHHhhh-cccccccC----CCCcccccccccccccccCCEEEEEeeeC
Q 007030 160 -----LRKCMS-LGYSTKKA----NKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 160 -----l~~~~~-~G~S~K~~----~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
++-+|. +-.++|.+ ....|+.|.|++ +.-.++..++|.|++.
T Consensus 85 ~~~~~~elv~~~lhagsKf~~~~~~vSgGl~GvGls-~vnalS~~l~v~~~r~ 136 (391)
T 1ei1_A 85 EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS-VVNALSQKLELVIQRE 136 (391)
T ss_dssp TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred cCcchHHHhheeccccCCcCCCcccccCCccccchH-HHHHhcCeEEEEEEeC
Confidence 455665 54555542 347899999995 4566778899999874
No 24
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.45 E-value=7.7e-08 Score=96.25 Aligned_cols=121 Identities=22% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccccCccCccccCCCcCcccccccccc-cccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEE
Q 007030 71 AGTYAANITIKSTPVQGSLEHARVHPK-FLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVF 148 (621)
Q Consensus 71 ag~~~~~~~~~~~~~~~~l~~~~~~p~-fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I 148 (621)
+.+|+. ....-...++|++..|. |+-|.. ..-+..++.|+||||+|+..++ ++.|.|.+.. ...|+|
T Consensus 8 ~~~y~~----~~i~~l~~le~vr~RPgmYiGs~~--~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~-----~g~i~V 76 (226)
T 4emv_A 8 INNYND----DAIQVLEGLDAVRKRPGMYIGSTD--GAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK-----DGSLTV 76 (226)
T ss_dssp -------------CCCBCTHHHHHCHHHHHSCSS--HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT-----TSCEEE
T ss_pred hhcCCh----hhcEEcchhHHHhhCCceEEcCCC--cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC-----CCeEEE
Confidence 455666 22333677888888873 444433 3455678999999999998654 7888887643 237999
Q ss_pred EECCCCCCHHH-------HHHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 149 IDDGGGMDPES-------LRKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 149 ~DNG~GMs~e~-------l~~~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.|||.||+.+. ++-+|. +-.+.|. -....|+.|+|++ +.-.|...++|.+++.+
T Consensus 77 ~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kfd~~~yk~SgGlhGvG~s-vvNALS~~l~v~v~r~g 142 (226)
T 4emv_A 77 QDHGRGMPTGMHAMGIPTVEVIFTILHAGGKFGQGGYKTSGGLHGVGSS-VVNALSSWLEVEITRDG 142 (226)
T ss_dssp EECSSCCCCSBCGGGCBHHHHHHHCBC--------------CGGGCCHH-HHHHTEEEEEEEEEETT
T ss_pred EEcCCCccccccccCceehheeEEeecccCccCccceEeccccccccch-hhhhcccceEEEEEeCC
Confidence 99999999998 666664 4444444 2457899999995 56678889999999853
No 25
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.25 E-value=5.3e-07 Score=96.09 Aligned_cols=105 Identities=17% Similarity=0.137 Sum_probs=70.8
Q ss_pred Cccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhh
Q 007030 87 GSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164 (621)
Q Consensus 87 ~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~ 164 (621)
+.+|+++.-| +|.-| |...-+..++.||||||+||..++ |+.|.|.+.. + ..|+|.|||.||+.+.+.
T Consensus 10 ~~lE~vrkRPgmYiGs--~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~---~--g~I~V~DnGrGIp~e~v~--- 79 (369)
T 3cwv_A 10 GIVENVRKRPGMYCGD--VGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGG---D--GSIALFCTSRTVTAENLV--- 79 (369)
T ss_dssp CHHHHHHHSTHHHHSC--SSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT---T--SCEEEEEEESSCCHHHHH---
T ss_pred cHhHHHHhCCceEEcC--CCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeC---C--CEEEEEECCCCcCHhHee---
Confidence 3456666655 33333 333577789999999999987664 9999888853 2 289999999999993222
Q ss_pred hcccccccCC----CCcccccccccccccccCCEEEEEeeeCC
Q 007030 165 SLGYSTKKAN----KTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 165 ~~G~S~K~~~----~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
.+-.++|.+. ..++.-| |++ +.-.++..++|.|++.+
T Consensus 80 ~lhagsKf~~~~~~~~y~vsG-Gls-~vnalSs~l~v~t~r~g 120 (369)
T 3cwv_A 80 RVATGAGFLGRPPGDGWGWDS-MLV-VSLALSSRYQVDIWADG 120 (369)
T ss_dssp HHHTTTTGGGSSCCCSTTTTS-SHH-HHHHTEEEEEEEEEETT
T ss_pred eeecCCCcCCCcccccccccC-HHH-HHHHhhceEEEEEEECC
Confidence 3333344422 3444556 764 55667788999999753
No 26
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=98.25 E-value=4.9e-07 Score=97.54 Aligned_cols=117 Identities=23% Similarity=0.284 Sum_probs=67.2
Q ss_pred cccCccCccccCCCcCccccccccc-ccccccccccccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEE
Q 007030 72 GTYAANITIKSTPVQGSLEHARVHP-KFLHSNATSHKWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFI 149 (621)
Q Consensus 72 g~~~~~~~~~~~~~~~~l~~~~~~p-~fLhsnsTsh~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~ 149 (621)
.+|+. ....-...+++++.-| +|+-+... ...+.|+||||+|+..+| ++.|.|.+.. ...|+|.
T Consensus 22 ~~Y~a----~~I~vL~glE~VRkRPgMYiGst~~-----~hlv~EivdNsiDea~ag~~~~I~V~i~~-----dgsI~V~ 87 (408)
T 3lnu_A 22 TRYNA----ADIEVLSGLDPVKRRPGMYTDTARP-----NHLAQEVIDNSVDEALAGHAKQIEVTLYK-----DGSCEVS 87 (408)
T ss_dssp ----------------CCHHHHHCGGGTSCTTST-----HHHHHHHHHHHHHHHHTTSCCEEEEEECT-----TSCEEEE
T ss_pred CCcCH----hHceeccccHHHhcCCccEECCCCc-----chhhHHHHHHHHHHhhcCCCceEEEEEeC-----CCeEEEE
Confidence 36777 2223356788888877 45544332 568999999999998665 8888888742 2379999
Q ss_pred ECCCCCCHHH--------HHHhhh-ccccccc----CCCCcccccccccccccccCCEEEEEeeeCC
Q 007030 150 DDGGGMDPES--------LRKCMS-LGYSTKK----ANKTIGQYGNGFKTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 150 DNG~GMs~e~--------l~~~~~-~G~S~K~----~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~~ 203 (621)
|||.||+.+. ++-+|+ +-...|. -....|+.|+|++ +.-.|...++|.+++.+
T Consensus 88 DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKfd~~~ykvSgGlhGvG~s-vVNALS~~l~v~v~rdG 153 (408)
T 3lnu_A 88 DDGRGMPVDIHPEEKIPGVELILTRLHAGGKFNNRNYTFSGGLHGVGVS-VVNALSTKVELFIKREG 153 (408)
T ss_dssp ECSSCCCCSBCTTTCSBHHHHHHHCC--------------------CHH-HHHHTEEEEEEEEEETT
T ss_pred EcCCCCCcccccccCCcchheEEEecccCCCcCCCceeecCCccccccc-eehhccCeEEEEEEECC
Confidence 9999999876 344554 3333343 2357899999985 56678889999999753
No 27
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.22 E-value=9.2e-07 Score=97.00 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=68.1
Q ss_pred cHHHHHHHhhccchhhhhCCCc--eEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-CCCCcccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGAT--FVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK-ANKTIGQYGN 182 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt--~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~-~~~~IGrfGi 182 (621)
....+|.|||+||+||...+.. .|.|.+.... .++...|+|.|||.||+++++.++|. |..++|. .....|..|+
T Consensus 32 ~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GL 111 (471)
T 1mu5_A 32 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 111 (471)
T ss_dssp HHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCCSCCSCSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccccccCCCCcee
Confidence 4557999999999999432210 6888776532 12456899999999999999999987 4444443 2356677899
Q ss_pred ccccc---ccccCCE-EEEEeeeCC
Q 007030 183 GFKTS---TMRLGAD-VIVFSRATH 203 (621)
Q Consensus 183 GlKsA---s~~lG~~-v~V~Sr~~~ 203 (621)
|+..+ +-.+|+. +.|.|+..+
T Consensus 112 GL~iv~~l~~~~gG~~i~v~S~~~~ 136 (471)
T 1mu5_A 112 GVKAAVLYSQMHQDKPIEIETSPVN 136 (471)
T ss_dssp THHHHHHHHHHHCCCCEEEEEECTT
T ss_pred eHHHHHHHHHHhCCCceeEEEecCC
Confidence 98532 3456677 999999764
No 28
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.19 E-value=9.4e-07 Score=95.17 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=68.5
Q ss_pred ccHHHHHHHhhccchhhh-hC-CCceEEEEEEEccCCCCCeEEEEECCCCCCHHH--------HHHhhh-ccccccc---
Q 007030 107 KWAFGAIAELLDNAVDEV-QN-GATFVKVDRVNIMKDNSPALVFIDDGGGMDPES--------LRKCMS-LGYSTKK--- 172 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~-~~-gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~--------l~~~~~-~G~S~K~--- 172 (621)
.-...++.||||||+||. .+ .|+.|.|.+.. +...|+|.|||.||+.+. ++-+|. +-.++|.
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~----~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~~ 126 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPKMSCIRVTIDP----ENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDDD 126 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCGG
T ss_pred chHHHHHHHHHhhHHhHHhhcCCCceEEEEEEC----CCCEEEEEECCCcccCccccccCccchhheeeeecccCCCCCC
Confidence 455679999999999996 22 38888888864 125899999999999887 555665 4444443
Q ss_pred -CCCCcccccccccccccccCCEEEEEeeeC
Q 007030 173 -ANKTIGQYGNGFKTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 173 -~~~~IGrfGiGlKsAs~~lG~~v~V~Sr~~ 202 (621)
-....|+.|+|++ +.-.+...++|.++..
T Consensus 127 ~ykvSgGlhGvGls-vVnAlS~~l~v~v~~~ 156 (400)
T 1zxm_A 127 EKKVTGGRNGYGAK-LCNIFSTKFTVETASR 156 (400)
T ss_dssp GCCCCSCCSSCHHH-HHHHTEEEEEEEEEET
T ss_pred cccccCCcccccee-eeEEeccceEEEEecC
Confidence 2347899999985 5566888999999874
No 29
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.13 E-value=1.5e-06 Score=96.58 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=68.7
Q ss_pred cHHHHHHHhhccchhhhhCCCc--eEEEEEEEcc-CCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc-CCCCcccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGAT--FVKVDRVNIM-KDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK-ANKTIGQYGN 182 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt--~V~I~i~~~~-~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~-~~~~IGrfGi 182 (621)
....+|.|||+||+||...+.. .|.|.+.... .++...|+|.|||.||+++++.++|. |.+++|. .....|..|+
T Consensus 31 ~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~~~~~gg~GL 110 (530)
T 2zbk_B 31 ALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGL 110 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCCCSCCSCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcccccCCCCccc
Confidence 4557999999999999432210 6788776532 12456899999999999999999987 4355443 2356788899
Q ss_pred ccccc---ccccCCE-EEEEeeeCC
Q 007030 183 GFKTS---TMRLGAD-VIVFSRATH 203 (621)
Q Consensus 183 GlKsA---s~~lG~~-v~V~Sr~~~ 203 (621)
|+..+ +-.+|+. +.|.|+..+
T Consensus 111 GLsiv~~l~~~~gG~~I~V~S~~~~ 135 (530)
T 2zbk_B 111 GVKAAVLYSQMHQDKPIEIETSPVN 135 (530)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTT
T ss_pred hHHHHHHHHHHhCCCceEEEEecCC
Confidence 98532 3456676 999999754
No 30
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.06 E-value=4.3e-06 Score=74.83 Aligned_cols=86 Identities=19% Similarity=0.240 Sum_probs=63.6
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---c
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl---K 185 (621)
...++.+||+||+.+ ....|.|.+.. .++...|.|.|||.||+++.+.+++..+++.+... +-.|+|+ +
T Consensus 45 l~~il~nLl~NAi~~---~~~~i~i~~~~--~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~---~g~GlGL~i~~ 116 (152)
T 1id0_A 45 FVEVMGNVLDNACKY---CLEFVEISARQ--TDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLR---PGQGVGLAVAR 116 (152)
T ss_dssp HHHHHHHHHHHHHHH---CSSEEEEEEEE--CSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTCCC---TTCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHh---CcCeEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHHHhccceeccCCC---CCcccCHHHHH
Confidence 456999999999998 33467777655 34567899999999999999999988665544322 2346665 3
Q ss_pred ccccccCCEEEEEeeeC
Q 007030 186 TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+++.+.+...
T Consensus 117 ~~~~~~gG~i~~~~~~~ 133 (152)
T 1id0_A 117 EITEQYEGKIVAGESML 133 (152)
T ss_dssp HHHHHTTCEEEEEECTT
T ss_pred HHHHHcCCEEEEEeCCC
Confidence 44567899999988764
No 31
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.06 E-value=1.8e-06 Score=80.85 Aligned_cols=90 Identities=22% Similarity=0.287 Sum_probs=63.2
Q ss_pred HHHHHhhccchhhhh-----------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH-------------------
Q 007030 111 GAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL------------------- 160 (621)
Q Consensus 111 ~AIaELVDNSiDA~~-----------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l------------------- 160 (621)
.+|.+||+||+.+.. .....|.|.+... ++...|.|.|||.||+++++
T Consensus 50 ~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~--~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (189)
T 1i58_A 50 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHE--GNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 127 (189)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCC
T ss_pred HHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEec--CCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccc
Confidence 469999999999841 2356677777653 45678999999999999987
Q ss_pred -----HHhhhcccccccCCCCccccccccc---ccccccCCEEEEEeeeC
Q 007030 161 -----RKCMSLGYSTKKANKTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 161 -----~~~~~~G~S~K~~~~~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
.++|..+++.+......+-.|+|+. ...-.+|+.+.+.|...
T Consensus 128 ~~~~~~~if~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~s~~~ 177 (189)
T 1i58_A 128 DQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESEKD 177 (189)
T ss_dssp HHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred hhhhHHHhcCCcccccccCCCCCCCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 5566666665542122233466654 34567899999998854
No 32
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.00 E-value=5.1e-06 Score=74.50 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc---
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK--- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK--- 185 (621)
...++.+|++||+.+. .+..|.|.+... ++...|.|.|||.||+++++.++|...++.... .-+-.|+|+.
T Consensus 47 l~~il~nLl~NA~~~~--~~~~I~i~~~~~--~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~ 120 (150)
T 1ysr_A 47 LRLAVDNAIANAVKHG--GATLVQLSAVSS--RAGVEIAIDDNGSGVPEGERQVVFERFSRGSTA--SHSGSGLGLALVA 120 (150)
T ss_dssp HHHHHHHHHHHHHHTT--CCSEEEEEEEEE--TTEEEEEEEESSSCCCGGGHHHHHTSCC-------------CCCHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEEec--CCEEEEEEEECCCCCCHHHHHHHhcccccCCCC--CCCCCCcCHHHHH
Confidence 4468999999999983 234677776653 356789999999999999999999855432211 1123466653
Q ss_pred ccccccCCEEEEEeeeC
Q 007030 186 TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+.+.+.+...
T Consensus 121 ~~~~~~gG~i~~~~~~~ 137 (150)
T 1ysr_A 121 QQAQLHGGTASLENSPL 137 (150)
T ss_dssp HHHHHTTCEEEEEECTT
T ss_pred HHHHHcCCEEEEeecCC
Confidence 44567899999988764
No 33
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=97.98 E-value=2.7e-06 Score=83.11 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=63.1
Q ss_pred cHHHHHHHhhccchhhhhCCC--ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-CCCcccccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGA--TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGF 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA--t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-~~~IGrfGiGl 184 (621)
....+|.+||+||+++...+. ..|.|.+.. .++...|.|.|||.||+++++.++|...++.+.. ....+-.|+|+
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL 215 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDE--KDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGL 215 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEE--ETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTH
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEec--CCCeEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHH
Confidence 345699999999999843222 346666554 3456789999999999999999999855544331 11222356675
Q ss_pred ---cccccccCCEEEEEeeeCC
Q 007030 185 ---KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 185 ---KsAs~~lG~~v~V~Sr~~~ 203 (621)
|...-.+|+.+.|.|...+
T Consensus 216 ~i~~~iv~~~gG~i~v~s~~~~ 237 (258)
T 2c2a_A 216 AITKEIVELHGGRIWVESEVGK 237 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEETTT
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 3445678999999998643
No 34
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.97 E-value=5.1e-06 Score=81.11 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=65.4
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
...+|.+||+||+++... ...|.|.+.. .++...|.|.|||.||+++.+.++|...++.+....++|.+. .+...
T Consensus 156 l~~il~nLl~NA~~~~~~-~~~I~i~~~~--~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i--~~~~~ 230 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPP-GGRVTLSARR--ALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLAL--VKALV 230 (268)
T ss_dssp HHHHHHHHHHHHHHHSCT-TCEEEEEEEE--CSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCEEEEEEEe--cCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHH--HHHHH
Confidence 456999999999998421 2567777765 345678999999999999999999986666554433333333 24456
Q ss_pred cccCCEEEEEeeeC
Q 007030 189 MRLGADVIVFSRAT 202 (621)
Q Consensus 189 ~~lG~~v~V~Sr~~ 202 (621)
-.+|+.+.+.+...
T Consensus 231 ~~~gG~i~i~s~~~ 244 (268)
T 4ew8_A 231 ELHGGWVALESEPG 244 (268)
T ss_dssp HHTTCEEEEEECTT
T ss_pred HHcCCEEEEEecCC
Confidence 77999999998864
No 35
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=97.95 E-value=7.8e-06 Score=72.81 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc-
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT- 186 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs- 186 (621)
....++.+|++||+.+.. ....|.|.+.. .++...|.|.|||.||+++++.+++...++.+.. -.|+|+..
T Consensus 47 ~l~~il~nll~NAi~~~~-~~~~I~i~~~~--~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~-----g~GlGL~i~ 118 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATG-ENGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQ-----GTGLGLSIC 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCEEEEEEEE--CSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC-------CCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCEEEEEEEe--cCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCCC-----CCCcCHHHH
Confidence 345699999999999842 34567777765 3456789999999999999999999866655433 24666543
Q ss_pred --ccc-ccCCEEEEEeee
Q 007030 187 --STM-RLGADVIVFSRA 201 (621)
Q Consensus 187 --As~-~lG~~v~V~Sr~ 201 (621)
..- .+|+.+.+.+..
T Consensus 119 ~~~~~~~~gg~~~~~~~~ 136 (152)
T 3a0y_A 119 RKIIEDEHGGKIWTENRE 136 (152)
T ss_dssp HHHHHTTTSCEEEEEEET
T ss_pred HHHHHHhCCcEEEEecCC
Confidence 343 689999988764
No 36
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.94 E-value=8.8e-06 Score=85.88 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=66.2
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC------CC
Q 007030 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------NK 175 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA------t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~------~~ 175 (621)
....+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+.. ..
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~ 308 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVAL--GEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGT 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEe--CCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCC
Confidence 345699999999999975443 258887765 3456789999999999999999999866655432 23
Q ss_pred Cccccccccc---ccccccCCEEEEEeeeC
Q 007030 176 TIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 176 ~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
..+-+|+|+. ...-.+|+++.|.|...
T Consensus 309 ~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2btz_A 309 PLAGFGYGLPISRLYAKYFQGDLQLFSMEG 338 (394)
T ss_dssp -----CCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 3455788864 34567899999999864
No 37
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=97.93 E-value=3.6e-06 Score=75.50 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccC--------CCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMK--------DNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQY 180 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~--------~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrf 180 (621)
...++.+|++||+.+.......|.|.+..... .....|.|.|||.||+++++.+.+...++.+.. -.
T Consensus 49 l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~-----g~ 123 (160)
T 1r62_A 49 IEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREG-----GT 123 (160)
T ss_dssp HHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC-------------------------
T ss_pred HHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCC-----CC
Confidence 45689999999999853225667776654221 004679999999999999999999866655532 24
Q ss_pred ccccc---ccccccCCEEEEEeee
Q 007030 181 GNGFK---TSTMRLGADVIVFSRA 201 (621)
Q Consensus 181 GiGlK---sAs~~lG~~v~V~Sr~ 201 (621)
|+|+. ...-.+|+.+.+.+..
T Consensus 124 GlGL~i~~~~~~~~gG~l~i~s~~ 147 (160)
T 1r62_A 124 GLGLSIARNLIDQHSGKIEFTSWP 147 (160)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ccCHHHHHHHHHHCCCeEEEEeCC
Confidence 66653 3456789999998875
No 38
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.93 E-value=8.3e-06 Score=86.58 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=69.5
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------C
Q 007030 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------N 174 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA------t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~ 174 (621)
+...+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|||.||+++++.++|...++.+.. .
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~ 320 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTL--GNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRA 320 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCC
Confidence 445699999999999964322 258887765 3456789999999999999999999866655432 2
Q ss_pred CCccccccccc---ccccccCCEEEEEeeeC
Q 007030 175 KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 175 ~~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 321 ~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g 351 (407)
T 2q8g_A 321 VPLAGFGYGLPISRLYAQYFQGDLKLYSLEG 351 (407)
T ss_dssp CCSSCTTCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcCCCHHHHHHHHHHhCCEEEEEEcCC
Confidence 34456788874 34567899999999864
No 39
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=97.90 E-value=4.8e-06 Score=94.19 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=64.7
Q ss_pred ccHHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhh-ccccccc--CCCCccccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMS-LGYSTKK--ANKTIGQYG 181 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~-~G~S~K~--~~~~IGrfG 181 (621)
..+..+|.|||+||+||...+ +..|.|.+.... .+...|+|.|||.||+++++.++|. +.++++. .....|..|
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~-~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~~s~Gg~G 114 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTG-PDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALKQSRGQQG 114 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEET-TTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC-CCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECC-CcEEEEEEEECCCCCCHHHHHHHhhhhccCCccccccccCCCce
Confidence 345579999999999995321 227777776531 1345799999999999999999986 3233332 224568899
Q ss_pred cccccc---ccccCCE-EEEEeeeCC
Q 007030 182 NGFKTS---TMRLGAD-VIVFSRATH 203 (621)
Q Consensus 182 iGlKsA---s~~lG~~-v~V~Sr~~~ 203 (621)
+|+..+ +-.+++. +.|.|+..+
T Consensus 115 lGLsiv~~ls~~~gG~~I~V~S~~~g 140 (621)
T 2q2e_B 115 IGISAAVLYAQMTAGRHTKILSKTSP 140 (621)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEECSS
T ss_pred echhhhhHHHHHhCCCceeEEeeccC
Confidence 998642 2334555 789898754
No 40
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.85 E-value=1.2e-05 Score=84.90 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=69.2
Q ss_pred cHHHHHHHhhccchhhhhCCC------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------C
Q 007030 108 WAFGAIAELLDNAVDEVQNGA------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA-------N 174 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA------t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~-------~ 174 (621)
....+|.+||+||+.+...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+.. .
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~ 307 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVL--GKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRN 307 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEE--CSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEe--CCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCC
Confidence 445699999999999964322 258887765 3456789999999999999999999866655432 2
Q ss_pred CCccccccccc---ccccccCCEEEEEeeeC
Q 007030 175 KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 175 ~~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
...+-+|+|+. ...-.+|+++.|.|...
T Consensus 308 ~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g 338 (394)
T 2e0a_A 308 APLAGFGYGLPISRLYAKYFQGDLNLYSLSG 338 (394)
T ss_dssp CCSSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEecCC
Confidence 23456788874 34567899999999864
No 41
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=97.85 E-value=7.9e-06 Score=74.27 Aligned_cols=89 Identities=20% Similarity=0.178 Sum_probs=65.5
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK-- 185 (621)
....+|.+||+||+.+ ....|.|.+... ++...|.|.|||.||+++++.++|...++.+.... -+-.|+|+.
T Consensus 47 ~l~~il~nll~NAik~---~~~~I~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~-~~g~GlGL~i~ 120 (161)
T 1bxd_A 47 SIKRAVANMVVNAARY---GNGWIKVSSGTE--PNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSART-ISGTGLGLAIV 120 (161)
T ss_dssp HHHHHHHHHHHHHHTT---CCSCEEEEEEEE--TTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCC-CCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHhh---cCCeEEEEEEEc--CCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCC-CCCcccCHHHH
Confidence 3456999999999998 356778877653 35678999999999999999999886655543222 234577764
Q ss_pred -ccccccCCEEEEEeeeC
Q 007030 186 -TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+++.+.+...
T Consensus 121 ~~~~~~~gG~i~~~~~~~ 138 (161)
T 1bxd_A 121 QRIVDNHNGMLELGTSER 138 (161)
T ss_dssp HHHHHHHTSEEEEEEETT
T ss_pred HHHHHHcCCEEEEEECCC
Confidence 34556899999988754
No 42
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.85 E-value=1.3e-05 Score=84.82 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=61.4
Q ss_pred HHHHHhhccchhhhh-----------CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH-------------------
Q 007030 111 GAIAELLDNAVDEVQ-----------NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL------------------- 160 (621)
Q Consensus 111 ~AIaELVDNSiDA~~-----------~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l------------------- 160 (621)
.++.+||.||+++.. .....|.|.+.. .++...|+|.|||.||+++.+
T Consensus 109 ~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~--~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~ 186 (379)
T 1b3q_A 109 EPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARH--EGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLS 186 (379)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEE--ETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSC
T ss_pred HHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEE--eCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCC
Confidence 469999999999831 124557776654 346678999999999999988
Q ss_pred -----HHhhhcccccccCCCCcccccccc---cccccccCCEEEEEeeeCC
Q 007030 161 -----RKCMSLGYSTKKANKTIGQYGNGF---KTSTMRLGADVIVFSRATH 203 (621)
Q Consensus 161 -----~~~~~~G~S~K~~~~~IGrfGiGl---KsAs~~lG~~v~V~Sr~~~ 203 (621)
..+|..|++++...+..+-.|+|+ |...-.+|+.+.|.|....
T Consensus 187 ~~~~~~~iF~p~fst~~~~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~ 237 (379)
T 1b3q_A 187 DQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSMGIESEKDK 237 (379)
T ss_dssp THHHHSGGGSTTCC-----------CCCSHHHHHHHHHTTCEEEEEEETTT
T ss_pred HHHHHHHhcCCCCccCCccCCCCCccccHHHHHHHHHHCCCEEEEEEcCCC
Confidence 557788888776444455567776 3456678999999998643
No 43
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.84 E-value=1.5e-05 Score=76.14 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=65.2
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK-- 185 (621)
....+|.+||+||+.+.. ....|.|.+... ++...|.|.|||.||+++.+.++|..+++.+. .+-.|+|+.
T Consensus 123 ~l~~il~nLl~NA~~~~~-~~~~i~i~~~~~--~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~----~~g~GlGL~i~ 195 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMP-NGGTLQVYVSID--NGRVLIRIADTGVGMTKEQLERLGEPYFTTKG----VKGTGLGMMVV 195 (244)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCEEEEEEEEEE--TTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG----GGCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCeEEEEEEEe--CCEEEEEEEecCCCCCHHHHHHHhcccccCCC----CCCcchhHHHH
Confidence 345699999999999832 355677777653 45678999999999999999999986666552 122466653
Q ss_pred -ccccccCCEEEEEeeeC
Q 007030 186 -TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+.+.+.+...
T Consensus 196 ~~i~~~~gG~i~~~~~~~ 213 (244)
T 3d36_A 196 YRIIESMNGTIRIESEIH 213 (244)
T ss_dssp HHHHHHTTCEEEEEEETT
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 34567899999998864
No 44
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.83 E-value=1.2e-05 Score=85.77 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=65.6
Q ss_pred cHHHHHHHhhccchhhhhCC-------CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccC-------
Q 007030 108 WAFGAIAELLDNAVDEVQNG-------ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKA------- 173 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~g-------At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~------- 173 (621)
....+|.+||+||+.|...+ ...|.|.+.. .++...|.|.|+|.||+++++.++|...++.+..
T Consensus 253 ~L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~ 330 (419)
T 1y8o_A 253 HLFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTL--GKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTR 330 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEE--CSSEEEEEEEECSCCCCHHHHGGGGCTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEe--CCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccC
Confidence 34469999999999996432 2258887765 3356789999999999999999999866655432
Q ss_pred CCCccccccccc---ccccccCCEEEEEeeeC
Q 007030 174 NKTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 174 ~~~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
....+-+|+|+. ...-.+|+++.|.|...
T Consensus 331 ~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g 362 (419)
T 1y8o_A 331 AAPLAGFGYGLPISRLYARYFQGDLKLYSMEG 362 (419)
T ss_dssp --CC--CTTHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcCCeecCHHHHHHHHHHhCCEEEEEecCC
Confidence 223455788864 34567899999999864
No 45
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.81 E-value=7.8e-06 Score=75.64 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhccccccc-CCCCccccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKK-ANKTIGQYGNGFK-- 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~-~~~~IGrfGiGlK-- 185 (621)
...+|.+||+||+++... ...+.|.+.....++...|.|.|||.||+++.+.+++...++... .....+..|+|+.
T Consensus 44 l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv 122 (177)
T 3sl2_A 44 ITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIA 122 (177)
T ss_dssp HHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHH
Confidence 346899999999998422 244666664433455678999999999999999999885554332 1222334567754
Q ss_pred -ccccccCCEEEEEeeeC
Q 007030 186 -TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+.+.+.+...
T Consensus 123 ~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 123 KEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp HHHHHHTTCCEEEEEETT
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 33567899999988764
No 46
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=97.80 E-value=6.4e-06 Score=77.63 Aligned_cols=87 Identities=23% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---c
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl---K 185 (621)
...++.+||+||+.+.. ....|.|.+.. ..|.|.|||.||+++.+.++|...++.+.. .-+-.|+|+ |
T Consensus 118 l~~il~nLl~NAi~~~~-~~~~i~i~~~~------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~ 188 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSP-QGSVVDVTLNA------DNFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQ 188 (222)
T ss_dssp HHHHHHHHHHHHHHTCC-TTCEEEEEECS------SEEEEECSCC----------------------------CTHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCeEEEEEcc------CeEEEEECCCCCCHHHHHHHHhhhccCCCC--CCCcccccHHHHH
Confidence 44689999999999832 23345555432 129999999999999999999855543321 112346665 3
Q ss_pred ccccccCCEEEEEeeeCCC
Q 007030 186 TSTMRLGADVIVFSRATHE 204 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~~ 204 (621)
...-.+|+++.|.|...++
T Consensus 189 ~i~~~~gG~i~i~s~~~~G 207 (222)
T 3jz3_A 189 RIAKLHGMNVEFGNAEQGG 207 (222)
T ss_dssp HHHHHTTCEEECCBCTTSS
T ss_pred HHHHHcCCEEEEEcCCCCc
Confidence 4456789999999987554
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.78 E-value=9.9e-06 Score=85.22 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=68.1
Q ss_pred cHHHHHHHhhccchhhhhCCC-------ceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCC------
Q 007030 108 WAFGAIAELLDNAVDEVQNGA-------TFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKAN------ 174 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gA-------t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~------ 174 (621)
....+|.|||+||+.|...+. ..|.|.+.. .++...|.|.|+|.||+++++.++|...++.+...
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~--~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~ 315 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIAN--NDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRI 315 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEE--CSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC---------
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEe--CCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCccccccc
Confidence 345699999999999975332 268887765 34567899999999999999999998666655421
Q ss_pred ---------------CCccccccccc---ccccccCCEEEEEeeeC
Q 007030 175 ---------------KTIGQYGNGFK---TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 175 ---------------~~IGrfGiGlK---sAs~~lG~~v~V~Sr~~ 202 (621)
...+-.|+|+. ...-.+|+++.|.|...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g 361 (388)
T 1gkz_A 316 SPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQG 361 (388)
T ss_dssp ----------------CCSCSSCHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ccchhhcccccccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCC
Confidence 22345788864 34567899999999864
No 48
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.69 E-value=3.5e-05 Score=83.39 Aligned_cols=89 Identities=21% Similarity=0.207 Sum_probs=64.9
Q ss_pred cHHHHHHHhhccchhhh-h-CCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHH--------HHhhh-cccccccC---
Q 007030 108 WAFGAIAELLDNAVDEV-Q-NGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESL--------RKCMS-LGYSTKKA--- 173 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~-~-~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l--------~~~~~-~G~S~K~~--- 173 (621)
-....+-|+||||+|+. . ..++.|.|.+.. +...|+|.|||.||+.+.. +-+|. +-...|.+
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~----d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~~~ 139 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDE 139 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCTTS
T ss_pred hHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC----CCCEEEEEECCCcccCcccccCCcccceEEEEEEecccccCCCc
Confidence 34458999999999996 2 237888888864 2258999999999997653 22454 33334432
Q ss_pred -CCCcccccccccccccccCCEEEEEeee
Q 007030 174 -NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 174 -~~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
...-|+.|+|.+ +.-.|...+.|.+++
T Consensus 140 ykvSGGLhGVG~S-vVNALS~~l~V~v~r 167 (418)
T 1pvg_A 140 KKVTGGRNGYGAK-LCNIFSTEFILETAD 167 (418)
T ss_dssp CCCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred eeccCCccceeee-eeeeccceEEEEEEE
Confidence 345799999985 566788899999986
No 49
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.68 E-value=1.5e-05 Score=80.37 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=62.2
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccccc
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTS 187 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsA 187 (621)
....++.+||+||+++.. .+..|.|.+.. .++...|+|.|||.||+++.+.++|..+++.+....++|.+. .|..
T Consensus 244 ~l~~vl~nLl~NA~k~~~-~~~~i~i~~~~--~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~g~GlGL~i--~~~~ 318 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATG-ENGKIKITSED--MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSI--CRKI 318 (349)
T ss_dssp HHHHHHHHHHTHHHHTTC-TTCCEEEEEEE--ETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------CCCTH--HHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CCCEEEEEEEe--cCCEEEEEEEECCCCCChHHHhhcCCCCccCCCCCccchHHH--HHHH
Confidence 455699999999999842 34567777765 345678999999999999999999987777664434444433 2333
Q ss_pred cc-ccCCEEEEEeee
Q 007030 188 TM-RLGADVIVFSRA 201 (621)
Q Consensus 188 s~-~lG~~v~V~Sr~ 201 (621)
.- .+|+.+.+.+..
T Consensus 319 v~~~~gg~i~~~~~~ 333 (349)
T 3a0r_A 319 IEDEHGGKIWTENRE 333 (349)
T ss_dssp HHHTTCSBCCEEECS
T ss_pred HHHhCCCEEEEEeCC
Confidence 44 689999988874
No 50
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.61 E-value=5e-05 Score=68.13 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=55.8
Q ss_pred HHHHHHHhhccchhhhhCC--CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQNG--ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKT 186 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~g--At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKs 186 (621)
...++.|||+||+.+.... ...|.|.+... ++...|+|.|||.||+ .+.+++...++.+. ..+..|+|+..
T Consensus 40 l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~--~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~---~~~~~GlGL~i 112 (145)
T 1th8_A 40 IKTVVSEAVTNAIIHGYNNDPNGIVSISVIIE--DGVVHLTVRDEGVGIP--DIEEARQPLFTTKP---ELERSGMGFTI 112 (145)
T ss_dssp HHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEE--TTEEEEEEEECSSCCS--CHHHHTCCC----------CCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEe--CCEEEEEEEECCCCcC--hHHHhhcccccCCC---CCCCCcchHHH
Confidence 3458999999999873211 36677777653 3567899999999999 77888876555443 11235777653
Q ss_pred cccccCCEEEEEeeeC
Q 007030 187 STMRLGADVIVFSRAT 202 (621)
Q Consensus 187 As~~lG~~v~V~Sr~~ 202 (621)
+ -++...+.+.+...
T Consensus 113 v-~~~~~~i~~~~~~~ 127 (145)
T 1th8_A 113 M-ENFMDEVIVESEVN 127 (145)
T ss_dssp H-HHHSSEEEEEEETT
T ss_pred H-HHHHheEEEEeCCC
Confidence 3 34455888877754
No 51
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=97.57 E-value=3.7e-05 Score=67.84 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=53.7
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---c
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF---K 185 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl---K 185 (621)
.+.++.||++||+.+. .++.|.|.+... ++...|.|.|||.||+++.+ .. .|+|+ +
T Consensus 41 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------~g-----~GlGL~~~~ 99 (128)
T 3ehg_A 41 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------FS-----KGHGLLGMR 99 (128)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCSCSSC------------CC-----TTSHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEEEe--CCEEEEEEEECCcCcCcccC------------CC-----CCccHHHHH
Confidence 3458999999999983 467788887653 35678999999999997765 11 25554 3
Q ss_pred ccccccCCEEEEEeee
Q 007030 186 TSTMRLGADVIVFSRA 201 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~ 201 (621)
...-.+|+++.+.|..
T Consensus 100 ~~~~~~gG~i~~~s~~ 115 (128)
T 3ehg_A 100 ERLEFANGSLHIDTEN 115 (128)
T ss_dssp HHHHHTTCEEEEECSS
T ss_pred HHHHHcCCEEEEEeCC
Confidence 4456789999998876
No 52
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.52 E-value=6.4e-05 Score=73.64 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=54.5
Q ss_pred ccHHHHHHHhhccchhhhhCC-CceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc
Q 007030 107 KWAFGAIAELLDNAVDEVQNG-ATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK 185 (621)
Q Consensus 107 ~~~f~AIaELVDNSiDA~~~g-At~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK 185 (621)
.-+..++.||||||+|+..++ |+.|.|.+... ..|+|.|||.||+.+.- ..+....... .|+ +
T Consensus 30 ~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~-----g~i~V~DnG~Gip~~~h------~~~~~~~~e~--i~t--~- 93 (198)
T 3ttz_A 30 RGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD-----NWIKVTDNGRGIPVDIQ------EKMGRPAVEV--ILT--S- 93 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG-----GEEEEEECSSCCCCSBC------TTTSSBHHHH--HHH--T-
T ss_pred cchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC-----CeEEEEECCCCcccccc------CcCCCccccc--cce--e-
Confidence 455679999999999987667 99999988641 38999999999997611 0111110000 122 2
Q ss_pred ccccccCCEEEEEeeeCC
Q 007030 186 TSTMRLGADVIVFSRATH 203 (621)
Q Consensus 186 sAs~~lG~~v~V~Sr~~~ 203 (621)
++.-.|...++|.+++.+
T Consensus 94 SvVNALS~~l~v~v~r~g 111 (198)
T 3ttz_A 94 SVVNALSQDLEVYVHRNE 111 (198)
T ss_dssp CHHHHTEEEEEEEEEETT
T ss_pred EehhhhcCeEEEEEEECC
Confidence 344567788999998853
No 53
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.42 E-value=0.00011 Score=69.49 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=50.6
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
.+.++.||++||+.+. +++.|.|.+... ++...|+|.|||.||+++.+ ...++|.+. .+...
T Consensus 131 l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~~~~i~V~D~G~Gi~~~~~------------~g~GlGL~~--~~~~v 192 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHS--QAKTCRVDIQQL--WKEVVITVSDDGTFKGEENS------------FSKGHGLLG--MRERL 192 (218)
T ss_dssp HHHHHHHHHHHHHHHT--CCSEEEEEEEEE--TTEEEEEEEESSCCCC--------------------CHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCCEEEEEEEEe--CCEEEEEEEECCcCCCCCCC------------CCCCCCHHH--HHHHH
Confidence 3458999999999983 467788887653 45678999999999999876 112233322 24445
Q ss_pred cccCCEEEEEeee
Q 007030 189 MRLGADVIVFSRA 201 (621)
Q Consensus 189 ~~lG~~v~V~Sr~ 201 (621)
-.+|+.+.|.|..
T Consensus 193 ~~~gG~i~~~s~~ 205 (218)
T 3ehh_A 193 EFANGSLHIDTEN 205 (218)
T ss_dssp HHTTCEEEEECSS
T ss_pred HHcCCEEEEeCCC
Confidence 6789999998876
No 54
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.32 E-value=0.00014 Score=63.27 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=53.8
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccc---
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGF--- 184 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGl--- 184 (621)
....++.||++||+.+. .+..|.|.+... ++ ..|+|.|||.||+++. .|+|+
T Consensus 43 ~l~~il~nll~NA~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~i~ 97 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHA--AASTLTVRVKVD--DD-LCIEVTDNGRGMPDEF--------------------TGSGLTNL 97 (129)
T ss_dssp HHHHHHHHHHHHCCCCS--SCCEEEEEEEES--SE-EEEEEEECCCCCTTTT--------------------CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCceEEEEEEEc--CC-EEEEEecCCCCCCccc--------------------CCcCHHHH
Confidence 44568999999999983 467788888763 34 7899999999999765 25554
Q ss_pred cccccccCCEEEEEeeeC
Q 007030 185 KTSTMRLGADVIVFSRAT 202 (621)
Q Consensus 185 KsAs~~lG~~v~V~Sr~~ 202 (621)
|...-.+|+++.+.+...
T Consensus 98 ~~~~~~~gG~i~~~~~~~ 115 (129)
T 3zxo_A 98 RQRAEQAGGEFTLASMPG 115 (129)
T ss_dssp HHHHHHTTCEEEEEECTT
T ss_pred HHHHHHcCCEEEEeeCCC
Confidence 344567899999998875
No 55
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.16 E-value=0.00018 Score=62.31 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=52.9
Q ss_pred cHHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCccccccccc--
Q 007030 108 WAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFK-- 185 (621)
Q Consensus 108 ~~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlK-- 185 (621)
....++.||++||+.+. .++.|.|.+... ++ ..|+|.|||.||+++. .|+|+.
T Consensus 39 ~l~~il~nll~Na~k~~--~~~~i~i~~~~~--~~-~~i~v~D~G~gi~~~~--------------------~GlGL~~~ 93 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHA--NATSLAINVSVE--DD-VRVEVVDDGVGISGDI--------------------TESGLRNL 93 (124)
T ss_dssp HHHHHHHHHHHHHHTCT--TCCEEEEEEEEE--EE-EEEEEEECCCSSCGGG--------------------SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC--CCCEEEEEEEeC--CC-EEEEEEECCCCCCccc--------------------cccCHHHH
Confidence 34468999999999973 456788877663 34 7899999999999876 156653
Q ss_pred -ccccccCCEEEEEeeeC
Q 007030 186 -TSTMRLGADVIVFSRAT 202 (621)
Q Consensus 186 -sAs~~lG~~v~V~Sr~~ 202 (621)
...-.+|+++.+.+...
T Consensus 94 ~~~~~~~gG~i~~~~~~~ 111 (124)
T 3zxq_A 94 RQRADDAGGEFTVENMPT 111 (124)
T ss_dssp HHHHHHHTCEEEEEECTT
T ss_pred HHHHHHhCCEEEEEEcCC
Confidence 34567899999988764
No 56
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=96.86 E-value=0.00053 Score=67.69 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHhhccchhhhhCCCceEEEEEEEccCCCCCeEEEEECCCC--CCHHHHHHhhhcccccccCCCCcccccccc--
Q 007030 109 AFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG--MDPESLRKCMSLGYSTKKANKTIGQYGNGF-- 184 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~gAt~V~I~i~~~~~~~~~~I~I~DNG~G--Ms~e~l~~~~~~G~S~K~~~~~IGrfGiGl-- 184 (621)
...++.+|++||++|...+ ..|.|.+.. .++...|+|.|+|.| |+++.+.+.+...++++.. | .|+|+
T Consensus 147 ~~qvl~NLl~NA~~a~~~g-g~I~v~~~~--~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~----G-~GLGLai 218 (247)
T 4fpp_A 147 SSRAVLNIAQIAASALPAG-GVATVKGVA--ADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGLG----G-PWVQAAY 218 (247)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CEEEEEEEE--ETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCH----H-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-CeEEEEEEE--ECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCC----C-ccHHHHH
Confidence 4468999999999985433 457777765 346778999999987 7788777887644444322 2 36665
Q ss_pred -cccccccCCEEEEEeee
Q 007030 185 -KTSTMRLGADVIVFSRA 201 (621)
Q Consensus 185 -KsAs~~lG~~v~V~Sr~ 201 (621)
|...-..|+++.|.|..
T Consensus 219 ~~~iv~~hGG~i~v~s~~ 236 (247)
T 4fpp_A 219 LNALVRAAGGQIAVEIGE 236 (247)
T ss_dssp HHHHHHHTTCEEEEEEET
T ss_pred HHHHHHHcCCEEEEEEcC
Confidence 34567789999998764
No 57
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0013 Score=79.22 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHHHHHHhhccchhhhhCC-C-ceEEEEEEEccCCCCCeEEEEECCCCCCHH--------HHHHhhh-cccccccC----
Q 007030 109 AFGAIAELLDNAVDEVQNG-A-TFVKVDRVNIMKDNSPALVFIDDGGGMDPE--------SLRKCMS-LGYSTKKA---- 173 (621)
Q Consensus 109 ~f~AIaELVDNSiDA~~~g-A-t~V~I~i~~~~~~~~~~I~I~DNG~GMs~e--------~l~~~~~-~G~S~K~~---- 173 (621)
..-.+-|+||||+|...+| + +.|.|.+.. ....|+|.|||.||+-+ .++-+|+ +-.+.|.+
T Consensus 60 L~hl~~EildNsiDea~ag~~~~~I~V~i~~----~d~sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~~~y 135 (1177)
T 4gfh_A 60 LFKIFDEILVNAADNKVRDPSMKRIDVNIHA----EEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEK 135 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCEEEEEEET----TTTEEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCCSSC
T ss_pred eeeEeeEEEEChHhHHhhCCCCCeEEEEEEC----CCCEEEEEecCCcccccccCCCCCEeeeeeccccccccCcCCCCC
Confidence 3457899999999965544 3 678887753 23589999999999854 2333454 33344432
Q ss_pred CCCcccccccccccccccCCEEEEEeee
Q 007030 174 NKTIGQYGNGFKTSTMRLGADVIVFSRA 201 (621)
Q Consensus 174 ~~~IGrfGiGlKsAs~~lG~~v~V~Sr~ 201 (621)
...-|+.|+|.+ ++-.|...+.|.+..
T Consensus 136 kvSGGLHGVG~s-vVNALS~~~~vev~~ 162 (1177)
T 4gfh_A 136 KVTGGRNGYGAK-LCNIFSTEFILETAD 162 (1177)
T ss_dssp CCCSCCSSCHHH-HHHHTEEEEEEEEEE
T ss_pred eEeccCCChhhh-HHhhcCCceEEEEEE
Confidence 345699999985 445577777776653
No 58
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=94.15 E-value=0.026 Score=54.78 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHhhccchhhhhC-----CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccc
Q 007030 112 AIAELLDNAVDEVQN-----GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYS 169 (621)
Q Consensus 112 AIaELVDNSiDA~~~-----gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S 169 (621)
.+..|++||++|+.+ ..+.|.|.+.....++...|.|.|+|.|++++.+.++|.-|++
T Consensus 109 ~lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 109 KLAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HHHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 568899999999743 2466788776631145789999999999999999988875543
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=91.18 E-value=0.16 Score=53.76 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHhhccchhhhhC--CCceEEEEEEEccCCCCCeEEEEECCCCCCHHHHHHhhhcccccccCCCCcccccccccccc
Q 007030 111 GAIAELLDNAVDEVQN--GATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTST 188 (621)
Q Consensus 111 ~AIaELVDNSiDA~~~--gAt~V~I~i~~~~~~~~~~I~I~DNG~GMs~e~l~~~~~~G~S~K~~~~~IGrfGiGlKsAs 188 (621)
-++.||+.||+..... ....|.|.+.... ++...|+|.|+|.|+++. +.. +.-|.|+.. .
T Consensus 300 l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~-~~~l~i~V~D~G~g~~~~----------~~~------~~~G~GL~l-v 361 (399)
T 3ke6_A 300 HAISEFVENAVEHGYATDVSKGIVVAAALAG-DGNVRASVIDRGQWKDHR----------DGA------RGRGRGLAM-A 361 (399)
T ss_dssp HHHHHHHHHHHHHBCCSCCTTCEEEEEEECT-TSEEEEEEEESCBC----------------------------CHHH-H
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEEEcC-CCEEEEEEEECCCCCCCC----------CCC------CCCCcHHHH-H
Confidence 4899999999998310 1456888776632 346789999999999976 111 223556542 3
Q ss_pred cccCCEEEEEee
Q 007030 189 MRLGADVIVFSR 200 (621)
Q Consensus 189 ~~lG~~v~V~Sr 200 (621)
-.++..+.+.+.
T Consensus 362 ~~l~~~~~~~~~ 373 (399)
T 3ke6_A 362 EALVSEARIMHG 373 (399)
T ss_dssp HTTSSEEEEEEE
T ss_pred HHHHHheeeEEC
Confidence 457778876554
No 60
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=25.06 E-value=1.3e+02 Score=30.52 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=31.2
Q ss_pred cCceEEEEeCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 007030 411 VSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (621)
Q Consensus 411 ~~G~~vY~~nRLI~~-~ekVg~~~~~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l~ 476 (621)
..|+-+|+|.=+|.- .+.+..+.- +=|=|||+++-|+++-+..-+..+...+.+++.|.+++.
T Consensus 70 ~~~ikLYvrrVfI~d~~~~llP~yL---~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl 133 (263)
T 1y6z_A 70 SRGIRLYVKRVFINDKFSESIPRWL---TFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSI 133 (263)
T ss_dssp -CCEEEEETTEEEESCGGGGSCGGG---TTCEEEEEECC------------CTTHHHHHHHHHHHHH
T ss_pred hcCeeEEEeeeEeecchhhhchHHH---HHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHH
Confidence 469999999988852 222222211 225578899999998888878777766666666555444
No 61
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=23.57 E-value=2e+02 Score=28.98 Aligned_cols=63 Identities=8% Similarity=0.142 Sum_probs=37.5
Q ss_pred cCceEEEEeCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHH
Q 007030 411 VSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTL 476 (621)
Q Consensus 411 ~~G~~vY~~nRLI~~-~ekVg~~~~~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l~ 476 (621)
..|+-+|+|.=+|.- .+.+.... -+=|=|||+++-|+++-+..-+..+...+.+++.|.+++.
T Consensus 68 ~~~ikLYvrrVfI~d~~~~llP~y---L~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl 131 (260)
T 1usu_A 68 KNNIKLYVRRVFITDEAEDLIPEW---LSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLI 131 (260)
T ss_dssp -CCEEEEETTEEEESCCTTSSCGG---GTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeeeEeccchhhhchHH---HHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHH
Confidence 569999999988852 11111111 1225588899999999888888888877777766655554
No 62
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=22.25 E-value=1.9e+02 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=41.1
Q ss_pred cCceEEEEeCceecc-cccccCCCCccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHH
Q 007030 411 VSGFNVYHKNRLIRP-FWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMT 475 (621)
Q Consensus 411 ~~G~~vY~~nRLI~~-~ekVg~~~~~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l 475 (621)
..|+-+|+|.=+|.- .+.+..+.- +=|=|||+.+-|+++-+..-+..+...+.+++.|.+++
T Consensus 66 ~~~ikLYvrrVfI~D~~eeLlP~yL---~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKv 128 (303)
T 2gq0_A 66 KHGLKLYVQRVFIMDDAEQFMPNYL---RFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRV 128 (303)
T ss_dssp CCSEEEEETTEEEEEEEGGGSCGGG---TTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeceEeecchhhhchHHH---HHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHH
Confidence 569999999988852 111221111 22557889999999988877777777766665554443
No 63
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=20.27 E-value=1.1e+02 Score=28.94 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=22.5
Q ss_pred ccCceEEEEEecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q 007030 435 LKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQ 489 (621)
Q Consensus 435 ~~grGVIGVlea~fLePthnKQdFe~t~~y~~L~~~L~e~l~~YW~~~~~~~gy~ 489 (621)
.+||||+||+| ...| .+.|..+.-+. -++..+++||.
T Consensus 125 ~~GrgvlGVvD--G~~p----~GVE~e~d~~~------------Rk~lLr~iGYK 161 (162)
T 2ekm_A 125 DQGRGVIGVVD--GYTP----LGIETEADIKE------------RKELLRKFGYK 161 (162)
T ss_dssp SSCEEEEEEEE--SCCC----CEECCHHHHHH------------HHHHHHHTTSC
T ss_pred CCCcEEEEEec--CCCC----CCccCHHHHHH------------HHHHHHHhCCC
Confidence 58999999997 3444 35654332111 14556678885
Done!