BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007036
(620 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 276 bits (707), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 201/633 (31%), Positives = 315/633 (49%), Gaps = 109/633 (17%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
VIAND+D +RC LL+HQ KR+ + ++V NH+A P N S
Sbjct: 212 FVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLLVENNGSREV---------- 261
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L +DR+LCDVPCSGDGTLRK D+W+KW LH LQ++IA RG+ L GGR+V
Sbjct: 262 --LYYDRILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMV 319
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASH 179
YSTCS+NPVE+EAV+A +L K EGS+EL DV++E+P L PG+ +WKV K G W
Sbjct: 320 YSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEGHWYEKW 379
Query: 180 KHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEE 239
+ + R I P+MFP PK EE+
Sbjct: 380 EDIPTSRHTQIRPTMFP------------PKD-------------------------EEK 402
Query: 240 VSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQN 299
+ + L RCMR++PH QN+G FF+AVL K +P+P N + L R PP
Sbjct: 403 LKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP------WNKRQPKLQRR--PP----- 449
Query: 300 QDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEV-PVN 358
V D + PE L +N G A EP VD+E E P
Sbjct: 450 ----------VSACDASIAVAPE--LVKAVTENSAGMADEP------AVDTENGETKPCT 491
Query: 359 TETKSERTG------GKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQ 411
++ S +T +K+++ G + DP +F + D+ I + I+TFY +D SF
Sbjct: 492 NQSDSSKTDIVCCPPPSKKMKLFGFKE--DPFVFVSEDDPIFDPIQTFYALDPSFP-KKN 548
Query: 412 LVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSF 471
L++R + + +++Y VSK +++ L N +++K+ + G+K+ R + +G C++
Sbjct: 549 LLTRTQEGKK-RQLYMVSKELRNVLLHN---SEKMKVINTGIKVLCR--NNDGEQYGCAY 602
Query: 472 RISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIV 531
R++ EG+ + P+I +I+ S+ D K LL + + F E ++A+ MG V+
Sbjct: 603 RLAQEGIYTLYPFINARIVTVSIEDIKVLLTQENPFLSKF-SKETQKQANNFDMGSIVLK 661
Query: 532 LSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGDLVQE 591
+ P + + G W+G+ S+ V + L + + + EK +++++
Sbjct: 662 YEPDPQ---EPETLQCPIVLCG-WRGKTSIRSFVPKNERLHYLRMMGVEVFKEKAEVLEK 717
Query: 592 -----NALGTDEVQEEMNDNGKEEPESLEVAVN 619
A + + E+M+ +G +E ES E++ N
Sbjct: 718 KPVEGKACDEEHIDEKMDIDGAKE-ESKELSGN 749
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 180/571 (31%), Positives = 286/571 (50%), Gaps = 100/571 (17%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
VIAND+D +RC LL+HQ KR+ + ++V NH+A P + ++ +
Sbjct: 210 FVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPNLQ------------VDVDGRK 257
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L +DR+LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG+ L GGR+V
Sbjct: 258 ETLFYDRILCDVPCSGDGTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMV 317
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASH 179
YSTCS+NP+ENEAV+A +L K +G++EL DVS+E+P L PG+ KWKV K G W
Sbjct: 318 YSTCSLNPIENEAVIASLLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDGQWFEEW 377
Query: 180 KHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEE 239
K V R+ I P+MFP EE+
Sbjct: 378 KDVPSNRQTQIRPTMFPIKE-------------------------------------EEK 400
Query: 240 VSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQN 299
+ + LERC+R++PH QN+G FF+AVL K SP+P N PK Q
Sbjct: 401 LKAMNLERCIRILPHHQNTGGFFVAVLIKKSPMPW---------------NKRQPKVHQK 445
Query: 300 --QDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPV 357
TE+ + DG+++ + +L A + +P +++ + +TE
Sbjct: 446 LPGKTEDTEVTATNAGDGSEDATEKPTL-----------AEDEEPKKVQELQNSDTE--- 491
Query: 358 NTETKSERTG--GKRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQLVS 414
++K G +K+++ G + DP +F D+ + I+ FY +D SF L++
Sbjct: 492 --QSKKGVCGPPPSKKMKLFGFKE--DPFVFLPEDDPLFLPIQKFYALDPSFP-KMNLLT 546
Query: 415 RNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRIS 474
R + + +++Y VSK +++ L N +++K+ + G+K++ R + +G C+FR++
Sbjct: 547 RTQEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWSRNS--DGEQFGCAFRLA 600
Query: 475 SEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSK 534
EG+ + P+I +I+ + D K LL + + F +E K + MG V+
Sbjct: 601 QEGIYTLYPFIHARIVNVCIEDVKILLTQENPFLSKF-SSETQRKVKDMAMGSIVLKYEP 659
Query: 535 GGEALSNPIQIDASTIAIGCWKGRASLSVMV 565
E P + + G W+G+ SL V
Sbjct: 660 DPE---KPDDLQCPIVLCG-WQGKTSLRAFV 686
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 194/605 (32%), Positives = 299/605 (49%), Gaps = 101/605 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
VIAND+D +RC LL+HQ KR+ + ++V NH+A P + I+ +
Sbjct: 210 FVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQ------------IDVDGRK 257
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L +DR+LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG L GGR+V
Sbjct: 258 EILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMV 317
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASH 179
YSTCS+NP+E+EAV+A +L K EG++EL DVSNE+P L PG+ +WKV K G W
Sbjct: 318 YSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDW 377
Query: 180 KHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEE 239
V R I P+MFP PK E+
Sbjct: 378 DAVPHSRHTQIRPTMFP------------PKD-------------------------PEK 400
Query: 240 VSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQN 299
+ + LERC+R++PH QN+G FF+AVL K S +P + + KLQ
Sbjct: 401 LQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQ----------------PKLQG 444
Query: 300 QDTEEVNGMEVDLADGTDEKDPEGS-LEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVN 358
+ E ++ AD T+ K + S LE+ S + + TE N
Sbjct: 445 KSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEI-----------AHATEDLEN 493
Query: 359 TETKSERTGG---KRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQLVS 414
+K + G +K+++ G + DP +F D+ + I+ FY +D SF L++
Sbjct: 494 NGSKKDGVCGPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPIEKFYALDPSFP-RMNLLT 550
Query: 415 RNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRIS 474
R + + +++Y VSK +++ L N +++K+ + G+K++ R S G C+FR++
Sbjct: 551 RTTEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWCRNNS--GEEFDCAFRLA 604
Query: 475 SEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSK 534
EG+ + P+I +I+ S+ D K LL + F + +E +A L G V+
Sbjct: 605 QEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRK-LSSETYSQAKDLAKGSIVLKYEP 663
Query: 535 GGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERL-LMRLEIEKGDLVQENA 593
+NP + + G W+G+AS+ V E L L +M LE+ G+ +E
Sbjct: 664 DS---ANPDALQCPIVLCG-WRGKASIRTFVPK---NERLHYLRMMGLEV-LGEKKKEGV 715
Query: 594 LGTDE 598
+ T+E
Sbjct: 716 ILTNE 720
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 193/624 (30%), Positives = 303/624 (48%), Gaps = 107/624 (17%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
VIAND+D +RC LL+HQ KR+ + ++V NH+A P ++ +
Sbjct: 210 FVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLT------------VDVDGRK 257
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L +DR+LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG L GGR+V
Sbjct: 258 EILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMV 317
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASH 179
YSTCS+NPVE+EAV+A +L K EG++EL DVS E+P L PG+ +WKV + G W A
Sbjct: 318 YSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLKWMPGVSQWKVMTRDGQWFADW 377
Query: 180 KHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEE 239
V + R I P+MFP TD+ E+
Sbjct: 378 HEVPQGRHTQIRPTMFP-------PTDL------------------------------EK 400
Query: 240 VSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQN 299
+ + LERC+R++PH QN+G FF+AVL K +P+P + + K+QN
Sbjct: 401 LQAMHLERCLRILPHHQNTGGFFVAVLVKKAPMPWNKRQ----------------PKVQN 444
Query: 300 QDTEEVNGMEVDLADGTDEKDP--EGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPV 357
+ + E V E +P + LE+ I GA DSE
Sbjct: 445 K-SAEAREPRVSSHVAATEGNPSDQSELESQMI---TGAG-----------DSETAHNTE 489
Query: 358 NTETKSERTG-----GKRKLQIQGKWKGIDPVIFF-NDETIINSIKTFYGIDDSFQLSGQ 411
NTE+ ++ G +K+++ G + DP +F D+ + I+ FY +D SF
Sbjct: 490 NTESNEKKDGVCGPPPSKKMKLFGFKE--DPFVFIPEDDPLFPPIEKFYALDPSFP-RMN 546
Query: 412 LVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSF 471
L++R + + +++Y VSK +++ L N +++K+ + G+K++ R S G C+F
Sbjct: 547 LLTRTTEGKK-RQLYMVSKELRNVLLNN---SEKMKVINTGIKVWCRNNS--GEEFDCAF 600
Query: 472 RISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIV 531
R++ EG+ + P+I +I+ S+ D K LL + F + +E + L G V+
Sbjct: 601 RLAQEGIYTLYPFINSRIITVSMEDVKTLLTQENPFFRK-LSSEAYSQVKDLAKGSVVLK 659
Query: 532 LSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIEKGD---- 587
+NP + + G W+G+AS+ V + L + + + EK
Sbjct: 660 YEPDS---ANPDTLQCPIVLCG-WRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVI 715
Query: 588 LVQENALGTDEVQEEMNDNGKEEP 611
L ENA ++ +E ++P
Sbjct: 716 LTNENAASPEQPGDEDAKQTAQDP 739
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 265 bits (676), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 183/582 (31%), Positives = 291/582 (50%), Gaps = 94/582 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
VIAND+D +RC LL+HQ KR+ + ++V NH+A P IE+ +
Sbjct: 208 FVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLL------------IENNGSR 255
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L +DR+LCDVPCSGDGT+RK D+W+KW LH LQ++IA RG+ L GGR+V
Sbjct: 256 EVLYYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMV 315
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDK-GIWLASH 179
YSTCS+NPVE+EAV+ +L K EGS+EL DV++E+P L PG+ +W+V K G W
Sbjct: 316 YSTCSLNPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEGQWFEKW 375
Query: 180 KHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEE 239
+ V R I P+MFP ++D EE+
Sbjct: 376 EDVPTSRHTQIRPTMFP-----------------------------LKD--------EEK 398
Query: 240 VSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQN 299
+ + L RCMR++PH QN+G FF+AVL K +P+P N + L R PP + +
Sbjct: 399 LKSMNLNRCMRILPHHQNTGGFFVAVLIKKAPMP------WNKRQPKLQRR--PPVSVCD 450
Query: 300 QD-TEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVN 358
E+ D++ DE ++D E+G E P T + S+ V
Sbjct: 451 ASVAPEIVKAVADISAIADEP---------AVDAENG---ETKPCTNQSGSSKTDSVCCP 498
Query: 359 TETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNG 417
+K + G ++ DP +F + D+ I I+ FY +D SF L++R
Sbjct: 499 PPSKKMKLFGFKE----------DPFVFLSEDDPIFEPIQKFYALDPSFP-KKNLLTRTQ 547
Query: 418 DTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEG 477
+ + +++Y VSK +++ L N +++K+ + G+K+ R + +G C++R++ EG
Sbjct: 548 EGKK-RQLYMVSKELRNVLLHN---SEKMKVINTGIKVLCR--NNDGEQYGCAYRLAQEG 601
Query: 478 LPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLSKGGE 537
+ + P+I +IL S+ D K LL + + F E ++A+ L MG V+ +
Sbjct: 602 IYSLYPFINARILTVSVEDIKVLLTQENPFLSKF-SKETQKQANNLDMGSIVLKYEPDPQ 660
Query: 538 ALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLM 579
P + + G W+G+ S+ V + L++ + +
Sbjct: 661 ---QPETLQCPIVLCG-WRGKTSIRSFVFFLHRINLVQWIFI 698
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 182/593 (30%), Positives = 264/593 (44%), Gaps = 139/593 (23%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+VIAND D +R +L+HQ R+ + N++V NH+A P SS SD G+
Sbjct: 203 LVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKG--SSPSD-GLNVIEEK 259
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L FDR+L DVPCSGDGT RK +WR+W+ LH LQ++I +RG+ LLKVGG +V
Sbjct: 260 KILKFDRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLV 319
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHK 180
YSTCS+NP+ENEAVV L+ G+V LVDVS ++P L PGL WKV D +
Sbjct: 320 YSTCSINPIENEAVVTAALKATGGAVSLVDVSKKLPLLKRDPGLLSWKVLDDSLNEFQSP 379
Query: 181 HVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEV 240
+I + SM+P EEE+
Sbjct: 380 AENTNDKIELTESMWPLP--------------------------------------EEEM 401
Query: 241 SDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQ 300
S L +ERC RL PH QN+G FF+AVLQK P + + +P++ PP+ + Q
Sbjct: 402 SKLHIERCARLYPHMQNTGGFFVAVLQKTDP---INSRSFDPKKYTASMEILPPEN-KRQ 457
Query: 301 DTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTE 360
TE+ G DE +NS + G + D E
Sbjct: 458 RTEK----------GVDE-------ASNSTLTKSGNSY---------FDEE--------- 482
Query: 361 TKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVSRNGDT 419
P ++ N D+T I +I FYGID SF Q RN
Sbjct: 483 ----------------------PFVYINPDDTSIKTIVDFYGIDPSFP-RDQFFVRNQSG 519
Query: 420 NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT--------SREGNSAPCSF 471
V+ IY+ K+ ++ N ++K G++ F +Q S + N C+F
Sbjct: 520 IPVRSIYFACSLFKEIIEAN---TNRVKFVHGGVRFFVKQEISQLLKDFSLKANKDICNF 576
Query: 472 RISSEGLPVILPYITKQILY-ASLVDFKHLLQYKTIKFADFVDAEFGEKA-SKLMMGCCV 529
RI S G+ +I P++ ++ Y A L D K L++ + F ++ +K K+ +GC
Sbjct: 577 RIHSNGVNIISPFLNEKHFYDAGLKDLKILVKNEYPHVEQFSESGMLKKEFEKMPLGC-- 634
Query: 530 IVLSKGGEALSNPIQIDAST---------IAIGCWKGRASLSVMVTAIDCQEL 573
N +++DA T I W+ S ++M+ + Q L
Sbjct: 635 -----------NILRVDAQTKDGALMDMLILQPIWRSPTSCNLMLARKEKQNL 676
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 227/481 (47%), Gaps = 115/481 (23%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
V+AND+D RC +L+HQ KR+ + L+VTNH++ FP K + +
Sbjct: 211 FVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTK-----------PDGSK 259
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L FD++LCDVPCSGDGTLRK PDIW KWN+ LH +Q +I RG +L+VGGR+V
Sbjct: 260 AILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLV 319
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGI--WLAS 178
YSTCS+NP+ENEAV+ I++ +G++ELVD + VP L ++PG+ WK+ K +
Sbjct: 320 YSTCSLNPIENEAVLQRIIKDADGALELVDAGHLVPGLKYKPGMTDWKLATKEVDQIFTR 379
Query: 179 HKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEE 238
+ V + I P MFP + +
Sbjct: 380 FEEVPESLHTIIRPGMFPLPA--------------------------------------D 401
Query: 239 EVSDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQ 298
E++ + LE+C+R++PH Q+SG FF+AVL+K L +
Sbjct: 402 EMAKIGLEKCLRVLPHLQDSGGFFVAVLEKRRQL-----------------------SFE 438
Query: 299 NQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVN 358
D E+ V L + + E ++A DG + EE VP
Sbjct: 439 KNDVVEL----VKLNETAKQPAAEPQVDA------DGKPI------------EEKSVPWG 476
Query: 359 TETKSERTGGKRKLQIQGKWKGIDPVIFFND-ETIINSIKTFYGIDDSFQLSGQLVSRNG 417
+ K R G ++ DP +FF + + +IK FY +D+S LS + +
Sbjct: 477 PQRKKRRLHGYKE----------DPYVFFGENDPDYQAIKEFYQLDES--LSQRCLLTRC 524
Query: 418 DTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEG 477
T + K IYY S+ ++ DL +KI + G+K F R +R FR++ EG
Sbjct: 525 VTEKKKNIYYCSEPIR---DLVLNNENNIKIINTGVKTFVRCENRHTVH---PFRLAQEG 578
Query: 478 L 478
L
Sbjct: 579 L 579
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 174/598 (29%), Positives = 278/598 (46%), Gaps = 132/598 (22%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+VIAND D +R ++L+HQ KR+ + N+++ NH+A P NF +S G +
Sbjct: 198 IVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLP------NFHLSSPDGKKF---- 247
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L FDR+L DVPCSGDGT RK +W +W++ GLH+ Q++I MRG+ LL+ GGR+V
Sbjct: 248 --LKFDRILADVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLV 305
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHK 180
YSTCS+NP+ENEAVV+ +L GSV LVDVS+E+PQL G+ W V D
Sbjct: 306 YSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSD------- 358
Query: 181 HVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEV 240
+ I PS D PK E +++ L ++E+
Sbjct: 359 -------LNIYPSF-----------DTLPK----------ELYEKMPPTLWPLP--KKEL 388
Query: 241 SDLPLERCMRLVPHDQNSGAFFIAVLQKVSPL-----PVVQEKHINPEEKMLPRNDDPPK 295
++L ++ C+R+ PH QN+G FF+AVL+K L V + + E+ LP +
Sbjct: 389 AELNIQNCLRIYPHFQNTGGFFVAVLEKYENLTSSMKTAVDDNKVFLREQKLP--SEQAS 446
Query: 296 KLQNQDTEEVNGMEVDLADGTDEKDPEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEV 355
K + QDT+E + + LA E P+G
Sbjct: 447 KKRKQDTQETSS-DSKLA----EVKPKG-------------------------------- 469
Query: 356 PVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN-DETIINSIKTFYGIDDSFQLSGQLVS 414
+ GG R + +DP ++ D+ + I +GID++ Q
Sbjct: 470 ---------KNGGNR-------FHELDPFVYIKEDDQALEKIYKKFGIDEAIIKKNQFFV 513
Query: 415 RNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQ----TSRE--GNSAP 468
RN + K IY + ++ ++ N ++K GLK+F RQ SRE +
Sbjct: 514 RNVNGVPTKAIYISNDLFRNVIENN---RNRVKFVHGGLKIFVRQDFGSLSREIAEKNGT 570
Query: 469 CSFRISSEGLPVILPYITKQILY-ASLVDFKHLLQYKTIKFADFV-DAEFGEKASKLMMG 526
C FR+ S+G + +I + L+ +L D LL ++ + DF D+ F ++ + L +G
Sbjct: 571 CVFRVQSDGANLASHFIAESCLFHTTLSDLFILLDHEAVTIDDFPEDSLFRKEYNHLDLG 630
Query: 527 CCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLERLLMRLEIE 584
++ + E + + I WK +V+++ E+ ++L+IE
Sbjct: 631 STLLHVDLAKEE-----SVIKKQVYIPLWKSVRICNVLLSNS------EKRTLKLQIE 677
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 149/269 (55%), Gaps = 54/269 (20%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
V+AND D +R ++L+HQ KR+ +ANL+V NH+AQ FP R + N ++ +D
Sbjct: 197 FVVANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKND--------- 247
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
L FDR+LCDVPCSGDGT+RK ++W+ WN G GLH++Q+ I RG+ LLK GR+V
Sbjct: 248 -VLKFDRILCDVPCSGDGTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLV 306
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHK 180
YSTCS+NP+ENEAVVAE LRK + LV+ +++P LI G+ KW V D+ +
Sbjct: 307 YSTCSLNPIENEAVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNL------ 360
Query: 181 HVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEV 240
DEG ++ + + EEE
Sbjct: 361 ---------------------------------TEKTKGDEG--TLDSFFSPS---EEEA 382
Query: 241 SDLPLERCMRLVPHDQNSGAFFIAVLQKV 269
S L+ CMR+ PH QN+G FFI V +KV
Sbjct: 383 SKFNLQNCMRVYPHQQNTGGFFITVFEKV 411
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 29/243 (11%)
Query: 346 EKVDSE----ETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFNDE-TIINSIKTFY 400
EK+ SE E+E P + K E K +L +P +F + + + FY
Sbjct: 420 EKLSSETPALESEGPQTKKIKVEEVQKKERLPRDA---NEEPFVFVDPQHEALKVCWDFY 476
Query: 401 GIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQT 460
GID+ F + LV RN + +Y V ++KD + N +LKI G+K+F Q
Sbjct: 477 GIDNIFDRNTCLV-RNATGEPTRVVYTVCPALKDVIQAN---DDRLKIIYSGVKLFVSQR 532
Query: 461 SREGNSAPCSFRISSEGLPVILPYI-TKQILYASLVDFKHLLQYKTIKFADF----VDAE 515
S CS+RI SE LP++ ++ + +I+ A+L KHLL F D +D +
Sbjct: 533 S----DIECSWRIQSESLPIMKHHMKSNRIVEANLEMLKHLLIESFPNFDDIRSKNIDND 588
Query: 516 FGEKASKLMMGCCVIVLSKGGEALSNPIQIDASTIAIGCWKGRASLSVMVTAIDCQELLE 575
F EK +KL GC I +S+ A N + + WKG +++MV D ELL
Sbjct: 589 FVEKMTKLSSGCAFIDVSRNDPAKEN--------LFLPVWKGNKCINLMVCKEDTHELLY 640
Query: 576 RLL 578
R+
Sbjct: 641 RIF 643
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+++AN+ R +L RM AN +T+ +A+ F + E
Sbjct: 140 LLVANEYSASRVKVLHANIARMGVANCALTHFDARVF------------GEYMFE----- 182
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
+FD VL D PCSG+GT+RK PD + W+ G+ Q + LK GG +V
Sbjct: 183 ---IFDSVLLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELV 239
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
YSTC+++ EN+ V + ++ +VE +++S+ P
Sbjct: 240 YSTCALSRQENQNVCDYLKQRYPDAVEFINLSSLFP 275
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
+IAND R N+LI R VT + +F
Sbjct: 138 IIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT------------------ 179
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
FDRVL D PCS G +RK R W++G LQ ++ + LK GG +VY
Sbjct: 180 ---FDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVY 236
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDV 151
STC+++P+ENE VV +L+K + +E V +
Sbjct: 237 STCTVDPLENEEVVDFLLQKTDAKLEKVKL 266
>sp|A8H3W2|RSMF_SHEPA Ribosomal RNA small subunit methyltransferase F OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=rsmF PE=3
SV=1
Length = 488
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
++IAN+ R +L RM AN +T+ +A+ F + E+
Sbjct: 154 LLIANEYSASRVKVLHANVARMGVANCALTHFDARVF------------GEYMFET---- 197
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
FD +L D PCSG+GT+RK PD + W+ G+ Q + LKVGG +V
Sbjct: 198 ----FDSILLDAPCSGEGTIRKDPDALKNWDNNDDKGIVETQKALIESAFLALKVGGSLV 253
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQ 157
YSTC+++ EN+ V + +VE ++ PQ
Sbjct: 254 YSTCALSRQENQDVCHHLKSLYGDAVEFGSLATLFPQ 290
>sp|B0TIZ6|RSMF_SHEHH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
halifaxensis (strain HAW-EB4) GN=rsmF PE=3 SV=1
Length = 479
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 26/159 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+++AN+ R +L RM +N +T+ +A+ F
Sbjct: 147 LLVANEYSASRVKVLHANVARMGVSNCALTHFDARVF----------------------- 183
Query: 61 GQLLF---DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 117
G+ LF D VL D PCSG+GT+RK PD + W+ G+ Q + LKVGG
Sbjct: 184 GEYLFETFDSVLLDAPCSGEGTIRKDPDALKNWDNNDNKGIVDTQKALIESAFLALKVGG 243
Query: 118 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
+VYSTC+++ EN+ V + +VE ++ P
Sbjct: 244 CLVYSTCALSRQENQDVCHHLKTAFGEAVEFAALTELFP 282
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L++GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+++AN+ R +L +RM +NL +T+ +A+ F F S
Sbjct: 141 LLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVF----GKYLFES------------ 184
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
FD +L D PC G+GT+RK PD + W+ + S+Q + LK GG +V
Sbjct: 185 ----FDAILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKPGGSLV 240
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
YSTC++N EN+ V + +V+ ++ P
Sbjct: 241 YSTCTLNRRENQDVCLHLKATYGDAVQFESLAGLFP 276
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYHDAVEFLPLGDLFP 279
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNQEENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A4WBJ4|RSMF_ENT38 Ribosomal RNA small subunit methyltransferase F OS=Enterobacter sp.
(strain 638) GN=rsmF PE=3 SV=1
Length = 480
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 144 VILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPES------- 187
Query: 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120
FD +L D PCSG+G +RK PD + W+V + + Q ++ L+ GG +V
Sbjct: 188 ----FDAILLDAPCSGEGVVRKDPDALKNWSVASNLEIAATQRELIDSAFHALRPGGMLV 243
Query: 121 YSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
YSTC++N ENE+V + + +VE + + + P
Sbjct: 244 YSTCTLNRDENESVCLWLKEQYPQAVEFLPLDSLFP 279
>sp|A4SMI9|RSMF_AERS4 Ribosomal RNA small subunit methyltransferase F OS=Aeromonas
salmonicida (strain A449) GN=rsmF PE=3 SV=1
Length = 476
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 26/159 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
M++AN+ R +L +R N+ +T+ +A+ F
Sbjct: 144 MLVANEYSSSRLKVLSANIQRCGVTNVGMTHFDAKVF----------------------- 180
Query: 61 GQLL---FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 117
GQ L FD +L D PCSG+GT+RK D R W++ + + ++Q + LK GG
Sbjct: 181 GQWLPETFDAILLDAPCSGEGTVRKDEDALRNWSIESIDEIAAVQQGLLESAFHALKPGG 240
Query: 118 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
+VYSTC+++ EN+AV +L K ++ L +++ P
Sbjct: 241 VLVYSTCTLSQQENQAVCQSLLEKFGDALTLDSLADLFP 279
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q0TGZ7|RSMF_ECOL5 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAAVPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q57NF9|RSMF_SALCH Ribosomal RNA small subunit methyltransferase F OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmF PE=3 SV=2
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNRQENEAVCLWLKETYADAVEFLPLGDLFP 279
>sp|A9MNH4|RSMF_SALAR Ribosomal RNA small subunit methyltransferase F OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmF PE=3 SV=2
Length = 479
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R AN +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKILHANLCRCGVANTALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNLDIAATQRELLESAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + +++ P
Sbjct: 245 STCTLNRQENEAVCLWLKETYTDAVEFLPLNDLFP 279
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 26/159 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
+++AN+ R +L +RM N +T+ +A+ F
Sbjct: 140 LLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVF----------------------- 176
Query: 61 GQLL---FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 117
G+ L FD +L D PCSG+GT+RK P R W++ + Q + LK GG
Sbjct: 177 GEYLYHQFDAILLDAPCSGEGTIRKDPLALRNWSLEENASIIETQKALIESAFLALKTGG 236
Query: 118 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
+VYSTC+++ EN+ V ++ +VE +S P
Sbjct: 237 SLVYSTCALSRSENQEVCEHLMSCFPQAVEFQSLSELFP 275
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
Query: 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNM 60
++IAN+ R +L RM +N +T+ +A+ F
Sbjct: 140 LLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVF----------------------- 176
Query: 61 GQLL---FDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGG 117
G+ L FD +L D PCSG+GT+RK P W + + + Q + LK GG
Sbjct: 177 GEYLYDQFDAILLDAPCSGEGTIRKDPLALNNWGLAENSAIAETQKALLESAFLALKTGG 236
Query: 118 RIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
+VYSTC+++ +EN+ V + +VE ++ P
Sbjct: 237 SLVYSTCALSKLENQDVCEHLRSTFPEAVEFESLATLFP 275
>sp|B5YQX9|RSMF_ECO5E Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENE+V + +VE + + + P
Sbjct: 245 STCTLNREENESVCLWLKETYPDAVEFLPLGDLFP 279
>sp|Q8XCL9|RSMF_ECO57 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O157:H7 GN=rsmF PE=3 SV=2
Length = 479
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRSGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENE+V + +VE + + + P
Sbjct: 245 STCTLNREENESVCLWLKETYPDAVEFLPLGDLFP 279
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGIRNVALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
+FD +L D PCSG+G +RK PD + W+ + + Q ++ L+ GG +VY
Sbjct: 187 --MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENEAV + +VE + + + P
Sbjct: 245 STCTLNREENEAVCLWLKETYPDAVEFLPLGDLFP 279
>sp|A8AFL6|RSMF_CITK8 Ribosomal RNA small subunit methyltransferase F OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmF PE=3 SV=1
Length = 479
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMG 61
++AN+ R +L R +N+ +T HF G + F +A +
Sbjct: 145 ILANEFSASRVKVLHANISRCGISNVALT-----HFDG----RVFGAALPE--------- 186
Query: 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121
FD +L D PCSG+G +RK PD + W+V + + Q ++ L+ GG +VY
Sbjct: 187 --TFDAILLDAPCSGEGVVRKDPDALKNWSVESNLDIAATQRELIDSAFHALRPGGTLVY 244
Query: 122 STCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156
STC++N ENE+V + +VE + + + P
Sbjct: 245 STCTLNREENESVCLWLKETYPEAVEFLPLGDLFP 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,508,702
Number of Sequences: 539616
Number of extensions: 10262221
Number of successful extensions: 29101
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 28651
Number of HSP's gapped (non-prelim): 378
length of query: 620
length of database: 191,569,459
effective HSP length: 124
effective length of query: 496
effective length of database: 124,657,075
effective search space: 61829909200
effective search space used: 61829909200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)