Query 007036
Match_columns 620
No_of_seqs 292 out of 1621
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 18:01:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198 tRNA cytosine-5-methyl 100.0 6.4E-46 1.4E-50 389.3 12.8 176 1-188 185-362 (375)
2 PRK11933 yebU rRNA (cytosine-C 100.0 6.2E-41 1.4E-45 368.3 26.9 301 1-533 140-442 (470)
3 COG0144 Sun tRNA and rRNA cyto 100.0 2.1E-41 4.6E-46 361.3 18.7 131 2-151 185-315 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 2.3E-38 5E-43 328.5 11.0 131 2-152 113-247 (283)
5 TIGR00446 nop2p NOL1/NOP2/sun 100.0 7.8E-35 1.7E-39 298.9 17.1 122 2-144 99-220 (264)
6 KOG1122 tRNA and rRNA cytosine 100.0 2E-35 4.4E-40 313.1 11.8 136 1-156 268-403 (460)
7 PRK14903 16S rRNA methyltransf 100.0 6.1E-32 1.3E-36 295.3 17.1 130 2-152 265-394 (431)
8 PRK14901 16S rRNA methyltransf 100.0 2.9E-30 6.2E-35 282.3 15.5 125 2-143 280-404 (434)
9 PRK14904 16S rRNA methyltransf 100.0 7.6E-30 1.7E-34 279.7 18.1 127 2-151 278-404 (445)
10 TIGR00563 rsmB ribosomal RNA s 100.0 1.8E-29 3.8E-34 275.4 17.8 123 2-144 265-389 (426)
11 PRK14902 16S rRNA methyltransf 100.0 1.1E-28 2.5E-33 270.2 18.4 129 2-151 278-406 (444)
12 PRK10901 16S rRNA methyltransf 99.9 9.1E-27 2E-31 254.3 17.8 127 2-149 271-397 (427)
13 KOG2360 Proliferation-associat 99.8 1.8E-20 3.8E-25 198.1 10.1 129 2-150 241-371 (413)
14 PRK15128 23S rRNA m(5)C1962 me 98.3 7.3E-06 1.6E-10 89.8 13.8 121 2-152 246-370 (396)
15 TIGR00537 hemK_rel_arch HemK-r 98.2 2.8E-05 6E-10 75.2 13.2 119 2-149 44-163 (179)
16 TIGR01177 conserved hypothetic 98.1 1.9E-05 4.2E-10 84.1 11.2 95 2-130 207-301 (329)
17 PF13659 Methyltransf_26: Meth 98.0 8.8E-06 1.9E-10 72.3 5.8 91 2-125 26-117 (117)
18 TIGR03704 PrmC_rel_meth putati 97.9 0.0001 2.2E-09 76.0 12.0 118 2-145 113-234 (251)
19 PRK14967 putative methyltransf 97.9 0.0002 4.4E-09 71.9 13.4 118 2-149 62-182 (223)
20 TIGR03534 RF_mod_PrmC protein- 97.8 0.00019 4.2E-09 72.2 12.7 115 2-143 114-233 (251)
21 PRK00377 cbiT cobalt-precorrin 97.6 0.00054 1.2E-08 67.6 11.1 102 2-151 68-170 (198)
22 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00053 1.1E-08 80.4 12.8 115 2-151 564-680 (702)
23 COG2242 CobL Precorrin-6B meth 97.5 0.001 2.2E-08 65.9 11.9 98 2-150 61-158 (187)
24 PF12847 Methyltransf_18: Meth 97.5 0.00078 1.7E-08 59.2 9.2 83 2-124 28-112 (112)
25 TIGR03533 L3_gln_methyl protei 97.4 0.0019 4.1E-08 67.8 13.5 114 2-143 148-266 (284)
26 PRK11805 N5-glutamine S-adenos 97.4 0.00069 1.5E-08 72.0 10.1 112 2-142 160-277 (307)
27 COG1092 Predicted SAM-dependen 97.3 0.0017 3.6E-08 71.3 11.7 120 2-151 243-366 (393)
28 PRK09328 N5-glutamine S-adenos 97.3 0.0023 4.9E-08 65.6 11.9 114 2-142 135-253 (275)
29 PRK14968 putative methyltransf 97.2 0.006 1.3E-07 58.4 12.5 116 2-143 48-165 (188)
30 PF05175 MTS: Methyltransferas 97.2 0.0023 5.1E-08 61.7 9.5 97 2-139 58-154 (170)
31 PRK00121 trmB tRNA (guanine-N( 97.1 0.0029 6.2E-08 62.9 9.7 101 2-141 67-168 (202)
32 PF10672 Methyltrans_SAM: S-ad 97.0 0.0019 4.2E-08 68.1 7.6 96 2-131 149-246 (286)
33 TIGR00080 pimt protein-L-isoas 96.9 0.0038 8.3E-08 62.4 9.0 72 2-122 105-176 (215)
34 TIGR00536 hemK_fam HemK family 96.9 0.0076 1.6E-07 63.1 11.1 102 2-126 141-247 (284)
35 TIGR00138 gidB 16S rRNA methyl 96.8 0.013 2.8E-07 57.6 11.4 99 2-152 69-168 (181)
36 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0027 5.8E-08 69.4 6.9 77 2-125 72-148 (374)
37 TIGR02469 CbiT precorrin-6Y C5 96.7 0.011 2.5E-07 52.3 9.7 77 2-123 46-122 (124)
38 cd02440 AdoMet_MTases S-adenos 96.6 0.012 2.6E-07 48.5 8.6 80 2-122 24-103 (107)
39 PF13847 Methyltransf_31: Meth 96.6 0.013 2.7E-07 55.1 9.6 82 2-125 31-112 (152)
40 TIGR00091 tRNA (guanine-N(7)-) 96.6 0.006 1.3E-07 60.2 7.2 90 2-123 43-132 (194)
41 PRK04338 N(2),N(2)-dimethylgua 96.6 0.0047 1E-07 67.7 7.0 74 2-123 84-157 (382)
42 PRK03522 rumB 23S rRNA methylu 96.5 0.0055 1.2E-07 65.1 7.3 57 2-78 198-254 (315)
43 PRK07402 precorrin-6B methylas 96.5 0.028 6E-07 55.3 11.6 91 2-142 67-158 (196)
44 PRK08287 cobalt-precorrin-6Y C 96.5 0.023 5E-07 55.4 10.9 91 2-143 58-148 (187)
45 COG1041 Predicted DNA modifica 96.5 0.0089 1.9E-07 64.5 8.5 89 2-124 222-311 (347)
46 TIGR00438 rrmJ cell division p 96.4 0.019 4E-07 56.1 9.2 98 2-136 60-157 (188)
47 PRK00312 pcm protein-L-isoaspa 96.2 0.025 5.4E-07 56.2 9.5 74 2-124 103-176 (212)
48 PRK00107 gidB 16S rRNA methylt 96.0 0.038 8.2E-07 54.8 9.2 92 2-145 72-163 (187)
49 PRK04266 fibrillarin; Provisio 95.9 0.089 1.9E-06 53.7 11.8 77 2-122 99-175 (226)
50 PRK13942 protein-L-isoaspartat 95.8 0.037 8.1E-07 55.5 8.5 50 2-72 104-153 (212)
51 TIGR00479 rumA 23S rRNA (uraci 95.7 0.062 1.3E-06 59.4 10.7 58 2-77 317-375 (431)
52 PRK14121 tRNA (guanine-N(7)-)- 95.7 0.043 9.3E-07 60.4 9.2 93 2-129 149-241 (390)
53 TIGR02752 MenG_heptapren 2-hep 95.6 0.071 1.5E-06 53.3 9.6 79 2-123 73-151 (231)
54 PF01135 PCMT: Protein-L-isoas 95.5 0.021 4.5E-07 57.7 5.5 71 2-121 100-170 (209)
55 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.5 4.9E-05 1.1E-09 79.7 -13.9 133 68-267 1-142 (283)
56 PRK11873 arsM arsenite S-adeno 95.5 0.077 1.7E-06 54.7 9.7 81 2-125 105-185 (272)
57 PTZ00146 fibrillarin; Provisio 95.2 0.2 4.3E-06 53.3 11.8 76 2-122 160-236 (293)
58 PRK13168 rumA 23S rRNA m(5)U19 95.2 0.068 1.5E-06 59.5 8.6 59 2-77 322-380 (443)
59 PF09445 Methyltransf_15: RNA 94.9 0.055 1.2E-06 52.8 6.1 63 2-82 24-87 (163)
60 PF02475 Met_10: Met-10+ like- 94.9 0.071 1.5E-06 53.6 6.9 72 2-121 128-200 (200)
61 PRK13944 protein-L-isoaspartat 94.8 0.15 3.3E-06 50.7 9.1 72 2-122 100-172 (205)
62 PRK00517 prmA ribosomal protei 94.8 0.35 7.5E-06 49.7 11.9 90 2-150 145-235 (250)
63 TIGR00406 prmA ribosomal prote 94.7 0.26 5.7E-06 51.8 11.2 89 2-141 185-274 (288)
64 PRK10909 rsmD 16S rRNA m(2)G96 94.7 0.094 2E-06 52.6 7.5 83 2-126 79-161 (199)
65 PF08241 Methyltransf_11: Meth 94.7 0.053 1.1E-06 45.3 4.8 74 2-121 22-95 (95)
66 PRK00811 spermidine synthase; 94.7 0.19 4.1E-06 52.9 9.8 100 2-141 103-207 (283)
67 COG2518 Pcm Protein-L-isoaspar 94.3 0.13 2.9E-06 52.1 7.4 72 2-122 97-168 (209)
68 PRK04457 spermidine synthase; 94.2 0.23 4.9E-06 51.7 9.3 104 2-144 93-197 (262)
69 COG2520 Predicted methyltransf 94.1 0.32 6.9E-06 52.8 10.3 116 2-167 214-333 (341)
70 PRK08317 hypothetical protein; 94.1 0.35 7.7E-06 47.5 10.0 96 2-141 47-146 (241)
71 PRK09489 rsmC 16S ribosomal RN 94.1 0.55 1.2E-05 50.9 12.2 88 2-130 223-310 (342)
72 PRK14966 unknown domain/N5-glu 94.0 0.69 1.5E-05 51.6 12.8 115 2-143 278-397 (423)
73 PRK03612 spermidine synthase; 93.9 0.17 3.7E-06 57.7 8.2 100 2-140 324-430 (521)
74 PF08704 GCD14: tRNA methyltra 93.8 0.2 4.3E-06 52.0 7.8 91 2-143 68-163 (247)
75 PF01170 UPF0020: Putative RNA 93.8 0.35 7.5E-06 47.5 9.1 87 2-125 64-151 (179)
76 COG2519 GCD14 tRNA(1-methylade 93.8 0.27 5.9E-06 51.2 8.5 75 2-125 122-198 (256)
77 PF01861 DUF43: Protein of unk 93.8 0.47 1E-05 49.2 10.2 114 2-163 70-185 (243)
78 COG2265 TrmA SAM-dependent met 93.5 0.26 5.5E-06 55.2 8.4 59 2-78 318-376 (432)
79 PLN02781 Probable caffeoyl-CoA 93.5 0.28 6E-06 50.2 8.1 82 2-124 96-179 (234)
80 PLN02244 tocopherol O-methyltr 93.4 0.44 9.6E-06 51.3 9.9 81 2-125 144-225 (340)
81 PRK01544 bifunctional N5-gluta 93.2 0.7 1.5E-05 52.6 11.6 113 2-142 165-284 (506)
82 PLN02396 hexaprenyldihydroxybe 93.2 0.64 1.4E-05 50.1 10.7 79 2-123 156-235 (322)
83 PF01209 Ubie_methyltran: ubiE 93.2 0.31 6.6E-06 50.0 7.9 95 2-142 75-169 (233)
84 PRK11036 putative S-adenosyl-L 93.2 0.27 5.9E-06 50.3 7.6 84 2-127 69-153 (255)
85 TIGR00417 speE spermidine synt 93.0 0.5 1.1E-05 49.1 9.3 99 2-140 99-201 (270)
86 TIGR02085 meth_trns_rumB 23S r 93.0 0.32 7E-06 53.1 8.1 52 2-73 258-309 (374)
87 COG4122 Predicted O-methyltran 93.0 0.25 5.4E-06 50.5 6.8 78 2-123 87-166 (219)
88 PRK01581 speE spermidine synth 92.8 0.43 9.3E-06 52.4 8.7 99 2-139 177-282 (374)
89 PLN02476 O-methyltransferase 92.4 0.33 7.2E-06 51.3 7.0 82 2-124 146-229 (278)
90 COG4076 Predicted RNA methylas 92.1 0.12 2.6E-06 51.8 3.1 77 2-121 57-133 (252)
91 COG2226 UbiE Methylase involve 92.0 0.54 1.2E-05 48.6 7.8 88 2-134 78-165 (238)
92 PRK15068 tRNA mo(5)U34 methylt 91.7 1.8 4E-05 46.4 11.8 80 2-125 148-228 (322)
93 COG0742 N6-adenine-specific me 91.7 0.5 1.1E-05 47.2 6.9 82 2-121 69-152 (187)
94 PRK13943 protein-L-isoaspartat 91.6 0.68 1.5E-05 49.9 8.5 50 2-72 108-157 (322)
95 PF13649 Methyltransf_25: Meth 91.4 0.34 7.4E-06 42.2 4.9 74 2-117 27-101 (101)
96 PLN02233 ubiquinone biosynthes 91.2 1.3 2.8E-05 45.9 9.8 82 2-126 101-185 (261)
97 COG2263 Predicted RNA methylas 91.2 3.1 6.6E-05 41.9 11.8 95 2-148 71-165 (198)
98 TIGR00452 methyltransferase, p 91.0 1.7 3.7E-05 46.7 10.7 28 103-130 205-232 (314)
99 PRK11188 rrmJ 23S rRNA methylt 90.9 0.88 1.9E-05 45.7 7.9 85 2-123 79-165 (209)
100 PF02390 Methyltransf_4: Putat 90.8 0.47 1E-05 47.3 5.8 101 2-140 44-144 (195)
101 PF03602 Cons_hypoth95: Conser 90.8 0.18 3.8E-06 49.9 2.8 55 2-73 68-123 (183)
102 PRK11207 tellurite resistance 90.6 1.1 2.3E-05 44.4 8.2 80 2-123 55-134 (197)
103 TIGR01983 UbiG ubiquinone bios 90.5 1 2.2E-05 44.6 8.0 82 2-125 70-151 (224)
104 COG0220 Predicted S-adenosylme 89.8 0.72 1.6E-05 47.3 6.3 98 2-137 75-172 (227)
105 TIGR01934 MenG_MenH_UbiE ubiqu 89.8 1.6 3.5E-05 42.6 8.7 80 2-126 67-146 (223)
106 PF01596 Methyltransf_3: O-met 89.8 0.36 7.9E-06 48.6 4.1 83 2-125 73-157 (205)
107 KOG2671 Putative RNA methylase 89.6 0.76 1.6E-05 49.9 6.5 101 1-121 232-352 (421)
108 PLN02823 spermine synthase 89.4 1.3 2.9E-05 48.0 8.3 85 2-122 130-219 (336)
109 PHA03411 putative methyltransf 89.4 1.9 4.1E-05 45.7 9.2 108 2-143 91-206 (279)
110 PRK05134 bifunctional 3-demeth 89.3 1.4 3E-05 44.1 7.9 84 2-128 73-156 (233)
111 COG2890 HemK Methylase of poly 89.0 4.8 0.0001 42.4 12.0 118 2-151 137-261 (280)
112 COG4123 Predicted O-methyltran 88.9 1.5 3.2E-05 45.8 7.8 111 2-142 71-185 (248)
113 PRK00216 ubiE ubiquinone/menaq 88.7 2.8 6E-05 41.5 9.5 82 2-126 79-161 (239)
114 PRK05031 tRNA (uracil-5-)-meth 88.5 1.2 2.6E-05 48.5 7.3 36 2-37 231-266 (362)
115 PRK15451 tRNA cmo(5)U34 methyl 88.4 2.4 5.1E-05 43.4 8.9 79 2-124 85-165 (247)
116 PF05958 tRNA_U5-meth_tr: tRNA 88.3 1.7 3.6E-05 47.3 8.2 71 2-78 221-292 (352)
117 PHA03412 putative methyltransf 87.7 1.8 4E-05 44.9 7.6 83 2-121 79-161 (241)
118 PLN02336 phosphoethanolamine N 87.5 4 8.7E-05 45.6 10.9 97 2-142 292-388 (475)
119 PRK15001 SAM-dependent 23S rib 87.3 7.4 0.00016 43.0 12.4 88 2-128 255-345 (378)
120 PLN03075 nicotianamine synthas 87.0 2.9 6.3E-05 44.7 8.8 80 2-123 152-233 (296)
121 PRK10258 biotin biosynthesis p 86.8 2.3 4.9E-05 43.3 7.7 75 2-124 67-141 (251)
122 PLN02366 spermidine synthase 86.8 2.3 4.9E-05 45.6 8.0 83 2-121 118-204 (308)
123 TIGR00477 tehB tellurite resis 86.2 3 6.6E-05 41.1 8.1 79 2-123 55-133 (195)
124 PTZ00098 phosphoethanolamine N 86.0 3.1 6.6E-05 43.2 8.3 79 2-124 78-157 (263)
125 COG2227 UbiG 2-polyprenyl-3-me 85.7 1.3 2.9E-05 45.8 5.3 24 104-127 142-165 (243)
126 PRK12335 tellurite resistance 85.5 4.7 0.0001 42.3 9.5 77 2-121 145-221 (287)
127 PF02005 TRM: N2,N2-dimethylgu 85.3 1.7 3.8E-05 47.8 6.4 77 2-125 77-155 (377)
128 TIGR02143 trmA_only tRNA (urac 85.2 1.7 3.8E-05 47.1 6.3 36 2-37 222-257 (353)
129 PF10354 DUF2431: Domain of un 84.9 8.8 0.00019 37.5 10.4 78 62-151 73-150 (166)
130 PF02527 GidB: rRNA small subu 84.3 2.6 5.7E-05 41.9 6.5 92 2-142 75-166 (184)
131 TIGR02987 met_A_Alw26 type II 84.2 3.8 8.2E-05 46.7 8.7 133 2-151 66-225 (524)
132 TIGR00740 methyltransferase, p 84.2 5.3 0.00011 40.4 8.9 79 2-123 82-161 (239)
133 TIGR02072 BioC biotin biosynth 84.0 2.9 6.4E-05 41.1 6.8 75 2-123 61-135 (240)
134 PRK01683 trans-aconitate 2-met 83.8 4.8 0.0001 41.0 8.4 73 2-123 58-130 (258)
135 KOG1540 Ubiquinone biosynthesi 83.7 5.5 0.00012 42.0 8.7 95 2-142 133-230 (296)
136 PF02384 N6_Mtase: N-6 DNA Met 83.7 2.6 5.6E-05 44.3 6.6 121 2-142 80-205 (311)
137 PLN02672 methionine S-methyltr 83.6 4.6 0.0001 50.1 9.5 118 2-143 145-295 (1082)
138 COG2264 PrmA Ribosomal protein 83.4 10 0.00022 40.7 10.8 99 2-151 188-286 (300)
139 smart00828 PKS_MT Methyltransf 83.2 5.8 0.00013 39.3 8.6 79 2-124 26-105 (224)
140 PF01564 Spermine_synth: Sperm 82.9 3.4 7.4E-05 42.7 7.0 100 2-141 103-207 (246)
141 TIGR02716 C20_methyl_CrtF C-20 80.7 9.8 0.00021 40.0 9.6 86 2-131 176-262 (306)
142 PRK06922 hypothetical protein; 79.8 6.1 0.00013 46.6 8.3 96 2-127 445-541 (677)
143 KOG1596 Fibrillarin and relate 79.7 7.1 0.00015 40.9 7.7 97 1-142 183-283 (317)
144 PF01728 FtsJ: FtsJ-like methy 78.8 4.8 0.0001 38.8 6.1 72 63-150 90-163 (181)
145 PF02353 CMAS: Mycolic acid cy 78.7 7.6 0.00017 40.8 7.9 83 2-128 88-171 (273)
146 PLN02589 caffeoyl-CoA O-methyl 78.1 8.3 0.00018 40.1 7.9 80 2-121 107-188 (247)
147 PRK14103 trans-aconitate 2-met 77.8 5.2 0.00011 40.9 6.3 70 2-122 56-125 (255)
148 PLN02232 ubiquinone biosynthes 77.7 10 0.00022 36.2 7.9 79 4-125 2-83 (160)
149 KOG2904 Predicted methyltransf 76.8 18 0.00039 38.7 9.8 120 2-140 175-300 (328)
150 PF05401 NodS: Nodulation prot 76.5 5.8 0.00013 40.2 6.0 79 2-123 68-146 (201)
151 TIGR00095 RNA methyltransferas 76.2 3 6.4E-05 41.3 3.9 56 2-74 75-131 (189)
152 PLN02490 MPBQ/MSBQ methyltrans 75.9 8.5 0.00018 41.9 7.5 75 2-122 140-214 (340)
153 KOG2899 Predicted methyltransf 75.5 4.7 0.0001 42.2 5.1 44 61-122 163-208 (288)
154 PF10237 N6-adenineMlase: Prob 74.5 10 0.00023 37.0 7.1 59 63-152 85-143 (162)
155 KOG1663 O-methyltransferase [S 74.2 6.4 0.00014 40.7 5.7 80 2-121 101-181 (237)
156 PRK01544 bifunctional N5-gluta 73.6 7.5 0.00016 44.4 6.8 92 1-125 373-464 (506)
157 PF08242 Methyltransf_12: Meth 73.6 2.6 5.5E-05 36.3 2.4 17 103-119 83-99 (99)
158 PRK11705 cyclopropane fatty ac 72.8 14 0.0003 40.8 8.3 79 2-127 193-271 (383)
159 TIGR02021 BchM-ChlM magnesium 71.8 18 0.0004 35.9 8.3 35 2-36 80-115 (219)
160 TIGR03840 TMPT_Se_Te thiopurin 71.0 17 0.00037 36.7 7.9 25 103-127 132-156 (213)
161 PF06962 rRNA_methylase: Putat 70.9 42 0.00091 32.2 10.1 107 2-141 2-112 (140)
162 COG0275 Predicted S-adenosylme 69.2 11 0.00025 40.4 6.4 76 103-187 224-300 (314)
163 PF01269 Fibrillarin: Fibrilla 69.1 19 0.00041 37.2 7.7 97 1-142 100-200 (229)
164 smart00138 MeTrc Methyltransfe 69.0 17 0.00036 37.9 7.6 24 100-123 219-242 (264)
165 smart00650 rADc Ribosomal RNA 67.9 11 0.00023 36.1 5.5 49 2-73 38-86 (169)
166 COG2813 RsmC 16S RNA G1207 met 67.2 30 0.00066 37.2 9.1 103 2-150 185-287 (300)
167 COG2230 Cfa Cyclopropane fatty 65.9 22 0.00047 38.0 7.7 80 2-125 98-178 (283)
168 PF05430 Methyltransf_30: S-ad 65.1 14 0.00031 34.4 5.5 55 63-143 49-103 (124)
169 PF03848 TehB: Tellurite resis 65.0 29 0.00063 34.9 8.1 78 2-123 55-133 (192)
170 PF06325 PrmA: Ribosomal prote 64.0 22 0.00047 38.0 7.4 95 2-151 187-281 (295)
171 PLN02336 phosphoethanolamine N 63.1 32 0.00069 38.5 8.9 80 2-123 62-142 (475)
172 PF13636 Nol1_Nop2_Fmu_2: pre- 62.2 7.8 0.00017 34.8 3.1 70 444-533 11-80 (102)
173 KOG1271 Methyltransferases [Ge 60.3 37 0.00081 34.4 7.6 89 2-130 94-188 (227)
174 PF01795 Methyltransf_5: MraW 60.0 12 0.00027 40.3 4.7 78 104-188 222-299 (310)
175 KOG4300 Predicted methyltransf 59.4 35 0.00075 35.3 7.4 78 2-122 102-181 (252)
176 PRK11783 rlmL 23S rRNA m(2)G24 59.1 19 0.00041 42.9 6.4 54 2-74 259-313 (702)
177 PRK11524 putative methyltransf 57.2 19 0.00042 37.8 5.5 57 63-126 26-82 (284)
178 KOG2915 tRNA(1-methyladenosine 56.6 92 0.002 33.5 10.1 99 2-150 133-233 (314)
179 PRK10742 putative methyltransf 54.6 18 0.00038 38.0 4.6 52 2-73 113-173 (250)
180 PTZ00338 dimethyladenosine tra 53.6 25 0.00055 37.4 5.7 52 2-76 61-113 (294)
181 PRK11088 rrmA 23S rRNA methylt 50.6 27 0.00058 36.2 5.3 32 2-38 115-146 (272)
182 COG0421 SpeE Spermidine syntha 48.7 30 0.00064 36.8 5.3 86 2-125 103-192 (282)
183 COG0116 Predicted N6-adenine-s 47.3 1.3E+02 0.0029 33.4 10.1 88 2-124 257-345 (381)
184 COG0357 GidB Predicted S-adeno 46.3 37 0.00079 34.8 5.3 71 2-120 94-165 (215)
185 cd00315 Cyt_C5_DNA_methylase C 46.1 18 0.00039 37.8 3.2 58 1-83 24-81 (275)
186 PRK13255 thiopurine S-methyltr 44.5 1.2E+02 0.0025 30.9 8.6 27 101-127 133-159 (218)
187 KOG2730 Methylase [General fun 43.5 12 0.00026 38.8 1.3 66 2-84 119-185 (263)
188 TIGR00006 S-adenosyl-methyltra 42.0 52 0.0011 35.5 5.9 74 103-187 220-293 (305)
189 COG1867 TRM1 N2,N2-dimethylgua 41.9 25 0.00054 38.8 3.5 94 2-143 79-173 (380)
190 PRK07580 Mg-protoporphyrin IX 41.0 1.2E+02 0.0026 29.9 8.1 32 2-33 88-120 (230)
191 TIGR03438 probable methyltrans 39.0 1.3E+02 0.0028 31.8 8.3 34 102-138 156-189 (301)
192 PRK01747 mnmC bifunctional tRN 37.6 62 0.0013 38.1 6.2 54 63-144 165-220 (662)
193 PF01555 N6_N4_Mtase: DNA meth 35.4 85 0.0018 30.4 5.9 79 66-150 2-80 (231)
194 PRK14896 ksgA 16S ribosomal RN 33.9 73 0.0016 32.9 5.4 35 2-38 54-88 (258)
195 PRK15052 D-tagatose-1,6-bispho 33.1 61 0.0013 36.4 4.8 62 393-464 200-262 (421)
196 KOG3492 Ribosome biogenesis pr 32.3 1.5E+02 0.0032 29.1 6.6 120 391-533 11-135 (180)
197 PRK00050 16S rRNA m(4)C1402 me 32.2 38 0.00082 36.3 3.0 57 2-77 47-103 (296)
198 KOG2361 Predicted methyltransf 32.0 64 0.0014 34.0 4.5 24 103-126 163-186 (264)
199 KOG1253 tRNA methyltransferase 31.9 53 0.0012 37.7 4.2 80 2-125 137-217 (525)
200 COG1064 AdhP Zn-dependent alco 31.9 82 0.0018 34.5 5.5 30 2-36 193-222 (339)
201 PRK00536 speE spermidine synth 31.0 1.6E+02 0.0035 31.0 7.4 89 2-143 97-189 (262)
202 PF12147 Methyltransf_20: Puta 30.6 3.4E+02 0.0074 29.5 9.6 103 2-143 164-267 (311)
203 PF05185 PRMT5: PRMT5 arginine 26.8 91 0.002 35.4 4.9 96 2-139 217-315 (448)
204 PRK11630 hypothetical protein; 24.9 80 0.0017 31.8 3.7 37 104-140 15-55 (206)
205 PRK15458 tagatose 6-phosphate 24.6 1.1E+02 0.0023 34.6 4.9 78 393-481 204-283 (426)
206 TIGR02810 agaZ_gatZ D-tagatose 24.3 1.1E+02 0.0024 34.5 4.9 79 393-481 200-279 (420)
207 PF08013 Tagatose_6_P_K: Tagat 23.4 67 0.0015 36.1 3.0 44 118-168 17-63 (424)
208 PF03721 UDPG_MGDP_dh_N: UDP-g 23.4 3.2E+02 0.007 26.9 7.6 109 2-151 26-150 (185)
209 PRK00050 16S rRNA m(4)C1402 me 22.7 1.8E+02 0.0039 31.3 6.0 68 103-187 216-283 (296)
210 PRK10634 tRNA(ANN) t(6)A37 thr 22.6 1E+02 0.0023 30.6 4.0 39 102-140 6-48 (190)
211 PRK14891 50S ribosomal protein 22.5 92 0.002 29.6 3.3 49 397-451 7-55 (131)
212 COG4262 Predicted spermidine s 21.8 2.4E+02 0.0052 31.7 6.7 83 2-121 316-405 (508)
213 PF13489 Methyltransf_23: Meth 20.6 69 0.0015 29.2 2.1 24 103-126 95-118 (161)
No 1
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-46 Score=389.33 Aligned_cols=176 Identities=55% Similarity=0.896 Sum_probs=163.7
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+|+|||+|.+|+++|+||++|++.+++.|++||++.||++.+... .+.....|||||||||||||||+
T Consensus 185 ~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~------------~~~~~~~fDrVLvDVPCS~Dgt~ 252 (375)
T KOG2198|consen 185 YVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG------------NDKEQLKFDRVLVDVPCSGDGTL 252 (375)
T ss_pred eeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccC------------chhhhhhcceeEEecccCCCccc
Confidence 589999999999999999999999999999999999999865311 12345889999999999999999
Q ss_pred ccCcccccc-cCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCcc
Q 007036 81 RKAPDIWRK-WNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLI 159 (620)
Q Consensus 81 rK~pdiw~~-w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~ 159 (620)
|++++||+. |+...+.+||.||.+||+||++|||+||+||||||||||+|||+||+++|++++++++|+|++..||.++
T Consensus 253 rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 253 RKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDVSGDLPGLK 332 (375)
T ss_pred ccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceeeccccccce
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccCC-ccccchhhHHhhhcc
Q 007036 160 HRPGLRKWKVRDKG-IWLASHKHVRKFRRI 188 (620)
Q Consensus 160 ~~pGl~~W~v~~~~-~~~~~~~~v~~~~~~ 188 (620)
|.+|.+.|++.+++ .|+.++.++|.....
T Consensus 333 r~~g~t~~~~~~~~~~~~~~~~~vp~~~~~ 362 (375)
T KOG2198|consen 333 RMFGSTGWKVHDKVLKWFTSPLEVPKLVAN 362 (375)
T ss_pred ecCCCCcceEEecCcccccCccccccchhh
Confidence 99999999999966 499999999977654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=6.2e-41 Score=368.29 Aligned_cols=301 Identities=23% Similarity=0.369 Sum_probs=218.3
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
.|+|||++.+|++.|.++++|+|+.|+.|++.|+..++.. ....||+|||||||||+|++
T Consensus 140 ~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--------------------~~~~fD~ILvDaPCSG~G~~ 199 (470)
T PRK11933 140 AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--------------------LPETFDAILLDAPCSGEGTV 199 (470)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------------chhhcCeEEEcCCCCCCccc
Confidence 4899999999999999999999999999999999876421 12569999999999999999
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCccc
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIH 160 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~~ 160 (620)
||+|+++..|++.++..|+.+|++||.+|+++|||||+|||||||++|+|||+||++||+++++.++++++...++
T Consensus 200 rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~---- 275 (470)
T PRK11933 200 RKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFP---- 275 (470)
T ss_pred ccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccc----
Confidence 9999998899999999999999999999999999999999999999999999999999999986666665532111
Q ss_pred CCCccccccccCCccccchhhHHhhhccccCCCCCCCCCCCCCcCCCCCCCCCccccCCccccchhhcccccCCchhhhh
Q 007036 161 RPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVNSDEGLQQVEDVLTSADDLEEEV 240 (620)
Q Consensus 161 ~pGl~~W~v~~~~~~~~~~~~v~~~~~~~i~~smFp~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 240 (620)
|.. ..
T Consensus 276 --~~~-------------------------------~~------------------------------------------ 280 (470)
T PRK11933 276 --GAE-------------------------------KA------------------------------------------ 280 (470)
T ss_pred --ccc-------------------------------cc------------------------------------------
Confidence 100 00
Q ss_pred ccccccceEEEccccCCCCceEEEEEEEcCCCCccccccCCcccccCCCCCCCCccccCCcccccccccccccCCCCCCC
Q 007036 241 SDLPLERCMRLVPHDQNSGAFFIAVLQKVSPLPVVQEKHINPEEKMLPRNDDPPKKLQNQDTEEVNGMEVDLADGTDEKD 320 (620)
Q Consensus 241 ~~~~l~rCmRi~Ph~q~TGGFFVAvL~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (620)
.....|+|++||..+|.|||||+|+|.+....... ..
T Consensus 281 --~~~~~~~r~~P~~~~~dGfFiA~lrk~~~~~~~~~-----~~------------------------------------ 317 (470)
T PRK11933 281 --LTEEGFLHVFPQIYDSEGFFVARLRKTASVPRLPA-----PK------------------------------------ 317 (470)
T ss_pred --cCCCCeEEECCCCCCCcceeeEEEEecCCcccccc-----cc------------------------------------
Confidence 01246999999999999999999999754211000 00
Q ss_pred CCcccccccCCCCCCCCCCCCCCcccccCCcccccCCCcccccccCCCcccccccCCcccCCCcccCC--ChhhHHHHHh
Q 007036 321 PEGSLEANSIDNEDGAAVEPDPLTCEKVDSEETEVPVNTETKSERTGGKRKLQIQGKWKGIDPVIFFN--DETIINSIKT 398 (620)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~~~~k~~dP~vf~~--d~~~~~~I~~ 398 (620)
...+| .|+.-+. ..+.|....+
T Consensus 318 --------------------------------------------~~~~k------------~~~~~~~~~~~~~~~~~~~ 341 (470)
T PRK11933 318 --------------------------------------------YKVGK------------FPFTPAKDKEAQEIRQAAA 341 (470)
T ss_pred --------------------------------------------ccccc------------ccccccchhHHHHHHHHHH
Confidence 00000 0000000 1123444344
Q ss_pred HhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhcccCCCccEEEEceEeeEEEecCCCCCCCccceeeccCch
Q 007036 399 FYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSFRISSEGL 478 (620)
Q Consensus 399 fYgi~~~Fp~~~~Lv~Rn~~g~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~GvK~F~rq~~~~~~~~~C~~RI~qEGl 478 (620)
-|+++. +....++.++ ..||++-......+ .+|||+..|+.+=+-.. =+|.-++...
T Consensus 342 ~~~l~~--~~~~~~~~~~------~~l~~~p~~~~~~~-------~~l~v~r~Gl~lg~~kk--------~rfePs~ala 398 (470)
T PRK11933 342 SVGLSW--PENLRLWQRD------KEVWLFPAGIEPLI-------GKVRFSRIGIKLAETHK--------KGYRWQHEAV 398 (470)
T ss_pred hcCCCC--CCCCcEEEEC------CEEEEeccccchhh-------cCCeEeeeceeEeeeec--------CCeeEcHHHH
Confidence 456653 2223455444 37998887642211 47999999999976542 2788888887
Q ss_pred hhhhhcccCcEEecCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEEEEe
Q 007036 479 PVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 533 (620)
Q Consensus 479 ~~l~p~i~kRiv~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~vl~~~ 533 (620)
-.+.+.-..+.+.++.++....|..+.+... +. ..-|-++|.++
T Consensus 399 ~~l~~~~~~~~~~l~~~~~~~Yl~ge~l~~~---~~--------~~~G~~lv~~~ 442 (470)
T PRK11933 399 IALASPDNANAFELTPQEAEEWYMGRDIYPQ---TA--------PPAGEVIVTYQ 442 (470)
T ss_pred HHhCcccccceEecCHHHHHHHHCCCCccCC---CC--------CCCCEEEEEEC
Confidence 7777666678999999999999987665443 10 12477777665
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-41 Score=361.26 Aligned_cols=131 Identities=39% Similarity=0.584 Sum_probs=121.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|||++.+|+++|.+|++|||+.|+.++++|+..++.... ...+||+|||||||||+||+|
T Consensus 185 V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~------------------~~~~fD~iLlDaPCSg~G~ir 246 (355)
T COG0144 185 VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP------------------GGEKFDRILLDAPCSGTGVIR 246 (355)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc------------------ccCcCcEEEECCCCCCCcccc
Confidence 69999999999999999999999999999999998875421 113699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
|+|++|+.|++.++..|+.+|++||.+|+++||+||+|||||||++|+|||+||+++|++++ .++++++
T Consensus 247 r~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~-~~~~~~~ 315 (355)
T COG0144 247 RDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP-DFELEPV 315 (355)
T ss_pred cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC-Cceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999987 4676665
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=2.3e-38 Score=328.49 Aligned_cols=131 Identities=41% Similarity=0.616 Sum_probs=117.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|||++.+|+..|..+++|+|..++.+++.|+..+.. ......||+||+||||||+|++|
T Consensus 113 i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~-------------------~~~~~~fd~VlvDaPCSg~G~i~ 173 (283)
T PF01189_consen 113 IVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP-------------------KKPESKFDRVLVDAPCSGLGTIR 173 (283)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH-------------------HHHTTTEEEEEEECSCCCGGGTT
T ss_pred HHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc-------------------cccccccchhhcCCCccchhhhh
Confidence 89999999999999999999999999999999877521 01123699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhc----ccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL----KVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 152 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lL----k~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~ 152 (620)
|+|++.+.|++.++..|+.+|++||.+|++++ |+||+|||||||++|+|||+||++||++++ .++++++.
T Consensus 174 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~-~~~l~~~~ 247 (283)
T PF01189_consen 174 RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP-DFELVPIP 247 (283)
T ss_dssp TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST-SEEEECCE
T ss_pred hccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC-CcEEEecc
Confidence 99999667899999999999999999999999 999999999999999999999999999987 58888764
No 5
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=7.8e-35 Score=298.86 Aligned_cols=122 Identities=37% Similarity=0.605 Sum_probs=114.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++.+|+..++++++|+|..|+.+++.|+..++.. ...||+||+||||||.|+++
T Consensus 99 v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---------------------~~~fD~Vl~D~Pcsg~G~~~ 157 (264)
T TIGR00446 99 IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---------------------VPKFDAILLDAPCSGEGVIR 157 (264)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---------------------ccCCCEEEEcCCCCCCcccc
Confidence 899999999999999999999999999999999776421 13599999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 144 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~ 144 (620)
++|++++.|++.++..|+.+|++||.+|+++||+||+|||||||++|+|||+||+++|+++++
T Consensus 158 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 158 KDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred cChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 999998889999999999999999999999999999999999999999999999999999875
No 6
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=313.11 Aligned_cols=136 Identities=36% Similarity=0.507 Sum_probs=122.5
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+|+|||.+..|+..|+.++.|||+.|.+++|+|+..||.-. . ...|||||+||||||.|++
T Consensus 268 ~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~------------------~-~~~fDRVLLDAPCSGtgvi 328 (460)
T KOG1122|consen 268 VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE------------------F-PGSFDRVLLDAPCSGTGVI 328 (460)
T ss_pred eEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc------------------c-CcccceeeecCCCCCCccc
Confidence 48999999999999999999999999999999999988421 1 1379999999999999999
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVP 156 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp 156 (620)
.|.+.+....+..++.+++.+|++||..|++++++||+|||||||+.++|||+||+++|++++ .++|+++...++
T Consensus 329 ~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG 403 (460)
T KOG1122|consen 329 SKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIG 403 (460)
T ss_pred ccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC-ceEeccccccCC
Confidence 999998322256889999999999999999999999999999999999999999999999997 699999876554
No 7
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.98 E-value=6.1e-32 Score=295.32 Aligned_cols=130 Identities=28% Similarity=0.500 Sum_probs=119.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++.+|++.++++++|+|..++.+++.|+..++.. ....||+|||||||||.|++|
T Consensus 265 V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~--------------------~~~~fD~Vl~DaPCsg~G~~~ 324 (431)
T PRK14903 265 ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY--------------------VQDTFDRILVDAPCTSLGTAR 324 (431)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--------------------hhccCCEEEECCCCCCCcccc
Confidence 899999999999999999999999999999999876521 114699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVS 152 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~ 152 (620)
++|++++.|++.++..|+.+|++||.+|+++|||||+|||||||++|+|||+||.+||+++++ ++++++.
T Consensus 325 ~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~-~~~~~~~ 394 (431)
T PRK14903 325 NHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD-AEVIDIR 394 (431)
T ss_pred CChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCC-cEEeccc
Confidence 999998899999999999999999999999999999999999999999999999999999874 6776653
No 8
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=2.9e-30 Score=282.25 Aligned_cols=125 Identities=30% Similarity=0.468 Sum_probs=113.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++..|+..++++++|+|+.|+.+++.|+..++... ......||+||+||||||+|++|
T Consensus 280 v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----------------~~~~~~fD~Vl~DaPCSg~G~~~ 342 (434)
T PRK14901 280 IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK-----------------PQWRGYFDRILLDAPCSGLGTLH 342 (434)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc-----------------ccccccCCEEEEeCCCCcccccc
Confidence 8999999999999999999999999999999998765210 00125699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
++|++.+.|++.++..|+.+|.+||.+|+++|||||+|||||||++|+|||+||.++|++++
T Consensus 343 r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 343 RHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred cCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 99999667899999999999999999999999999999999999999999999999999875
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=7.6e-30 Score=279.75 Aligned_cols=127 Identities=26% Similarity=0.376 Sum_probs=115.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++..|+..++.+++++|..++.+.+.|+..++. ...||+|++||||||+|+++
T Consensus 278 V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~----------------------~~~fD~Vl~D~Pcsg~g~~~ 335 (445)
T PRK14904 278 ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP----------------------EEQPDAILLDAPCTGTGVLG 335 (445)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc----------------------CCCCCEEEEcCCCCCcchhh
Confidence 89999999999999999999999999999999976531 14699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
|+|++.+.|++.++..|..+|.+||.+|+++|||||+|||||||++|+|||+||+++|+++++ +++++.
T Consensus 336 r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~~~ 404 (445)
T PRK14904 336 RRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPE-FSAEPS 404 (445)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCC-CEEecc
Confidence 999997778999999999999999999999999999999999999999999999999999864 555443
No 10
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.96 E-value=1.8e-29 Score=275.38 Aligned_cols=123 Identities=30% Similarity=0.423 Sum_probs=107.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEc--cccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTN--HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn--~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|+|+|++.+|+..++++++|+|.. +.++. .|+..++.. .....||+||+||||||.|+
T Consensus 265 v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~-------------------~~~~~fD~VllDaPcSg~G~ 324 (426)
T TIGR00563 265 VVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW-------------------AENEQFDRILLDAPCSATGV 324 (426)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCC-eEEEEecccccccccc-------------------ccccccCEEEEcCCCCCCcc
Confidence 799999999999999999999987 55544 444332210 01256999999999999999
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 144 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~ 144 (620)
+|++|++.+.|++.++..|+.+|.+||.+|+++|||||+|||||||++|+|||+||++||+++++
T Consensus 325 ~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~ 389 (426)
T TIGR00563 325 IRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPD 389 (426)
T ss_pred cccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCC
Confidence 99999997778999999999999999999999999999999999999999999999999998863
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.96 E-value=1.1e-28 Score=270.24 Aligned_cols=129 Identities=32% Similarity=0.492 Sum_probs=116.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++..|+..++++++++|..++.+++.|+..++.. . ...||+||+|+||||.|+++
T Consensus 278 v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------------------~-~~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 278 VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------------------F-AEKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------------------h-cccCCEEEEcCCCCCCeeec
Confidence 899999999999999999999999999999998775320 0 14699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
++|++...|++.++..|+.+|.+||.+|+++|||||+|||||||++++|||+||.++|++++ .++++++
T Consensus 338 ~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~-~~~~~~~ 406 (444)
T PRK14902 338 RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP-EFELVPL 406 (444)
T ss_pred cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC-CcEEecc
Confidence 99999667788899999999999999999999999999999999999999999999999875 4777665
No 12
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.94 E-value=9.1e-27 Score=254.29 Aligned_cols=127 Identities=33% Similarity=0.450 Sum_probs=111.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|+|++++|+..++++++++|.. +.++++|+..++.. .....||+|++|+||||.|+++
T Consensus 271 v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~-------------------~~~~~fD~Vl~D~Pcs~~G~~~ 330 (427)
T PRK10901 271 VVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQW-------------------WDGQPFDRILLDAPCSATGVIR 330 (427)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhh-------------------cccCCCCEEEECCCCCcccccc
Confidence 799999999999999999999985 67888898764321 0125699999999999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 149 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLv 149 (620)
++|++.+.+++.++..|..+|.+||.+|+++|||||+|||||||++++|||+||.++|+++++ ++++
T Consensus 331 ~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~ 397 (427)
T PRK10901 331 RHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPD-AELL 397 (427)
T ss_pred cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCC-CEEe
Confidence 999994456888899999999999999999999999999999999999999999999998763 4443
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.8e-20 Score=198.05 Aligned_cols=129 Identities=23% Similarity=0.277 Sum_probs=108.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|.|.|.|..|...|..+++..|+.++.....|+...+. ...+.....||||++|||+|+..
T Consensus 241 i~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~-------------------~~~~~~v~~iL~DpscSgSgm~~ 301 (413)
T KOG2360|consen 241 IYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTAT-------------------PEKFRDVTYILVDPSCSGSGMVS 301 (413)
T ss_pred cchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCC-------------------cccccceeEEEeCCCCCCCcccc
Confidence 67999999999999999999999998888888866421 12346678999999999999987
Q ss_pred cCcccc--cccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEee
Q 007036 82 KAPDIW--RKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 150 (620)
Q Consensus 82 K~pdiw--~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd 150 (620)
+.-.+- ..-.+.++.+|...|.+|+.+|+.+.+. -++||||||++.+|||.||+.+|...++..++..
T Consensus 302 r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~~p~~~~l~~ 371 (413)
T KOG2360|consen 302 RQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAP 371 (413)
T ss_pred ceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhhhhhHHHHHHHhhChhHhhhch
Confidence 665442 2235678999999999999999998888 8999999999999999999999998876655554
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.30 E-value=7.3e-06 Score=89.78 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=89.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC--cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|+++..+....+|+++.|.. ++.+.+.|+..+..- + ......||.|++|+|+-...
T Consensus 246 V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~-~----------------~~~~~~fDlVilDPP~f~~~- 307 (396)
T PRK15128 246 VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRT-Y----------------RDRGEKFDVIVMDPPKFVEN- 307 (396)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHH-H----------------HhcCCCCCEEEECCCCCCCC-
Confidence 789999999999999999998874 788888888553210 0 00124699999999974432
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC--CChhccHHHHHHHHHhCCCceEEeeCC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEILRKCEGSVELVDVS 152 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS--lnP~ENEaVV~~~L~~~~~~~eLvd~~ 152 (620)
+ ..+.....-=.+|+..|+++|++||.|+++||| +..++=.++|.++..+.+..++++...
T Consensus 308 --k----------~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 308 --K----------SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred --h----------HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 1 111111222357778899999999999999999 777777888888888877778888754
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.17 E-value=2.8e-05 Score=75.25 Aligned_cols=119 Identities=20% Similarity=0.177 Sum_probs=83.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc-cc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG-TL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG-tl 80 (620)
|++.|+++..+..++++++..+. ++.+.+.|...++ ...||.|++++|+-... ..
T Consensus 44 v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------------------~~~fD~Vi~n~p~~~~~~~~ 99 (179)
T TIGR00537 44 ILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-----------------------RGKFDVILFNPPYLPLEDDL 99 (179)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-----------------------CCcccEEEECCCCCCCcchh
Confidence 78999999999999999988775 6777777764321 14699999999985332 22
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEe
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 149 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLv 149 (620)
+. +-|..+....+..-..++.++|.++.++||+||++++.+++.. ++..+..+|++.+-.++.+
T Consensus 100 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 100 RR--GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cc--cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---ChHHHHHHHHhCCCeEEEE
Confidence 21 2222332222333346688999999999999999999998876 3566677788776444433
No 16
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.09 E-value=1.9e-05 Score=84.06 Aligned_cols=95 Identities=24% Similarity=0.253 Sum_probs=76.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+|.+.+...+.|+++.|..++.+...|+..+|.. ...||.|++|+||.......
T Consensus 207 v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~---------------------~~~~D~Iv~dPPyg~~~~~~ 265 (329)
T TIGR01177 207 VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS---------------------SESVDAIATDPPYGRSTTAA 265 (329)
T ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc---------------------cCCCCEEEECCCCcCccccc
Confidence 789999999999999999999999888889999886521 25799999999996432111
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhc
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 130 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~E 130 (620)
...+..++.++|..+.+.||+||+++|.+++-...+
T Consensus 266 -------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~ 301 (329)
T TIGR01177 266 -------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLE 301 (329)
T ss_pred -------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHH
Confidence 123557789999999999999999999999865433
No 17
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.02 E-value=8.8e-06 Score=72.31 Aligned_cols=91 Identities=23% Similarity=0.271 Sum_probs=67.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+++.|+|+..+.+.++++.+.+. .++.+.+.|+..+... .....||.|++|+|.......
T Consensus 26 ~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-------------------~~~~~~D~Iv~npP~~~~~~~ 86 (117)
T PF13659_consen 26 VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP-------------------LPDGKFDLIVTNPPYGPRSGD 86 (117)
T ss_dssp EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT-------------------CTTT-EEEEEE--STTSBTT-
T ss_pred EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh-------------------ccCceeEEEEECCCCcccccc
Confidence 68999999999999999999987 5789999998765310 123679999999999754221
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
... ...+..+++.++.++||+||++++.||.
T Consensus 87 ~~~--------------~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 87 KAA--------------LRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp -----------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred chh--------------hHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 111 1116678999999999999999999984
No 18
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.91 E-value=0.0001 Score=75.98 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=81.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.-+...+.|+++.+. .+.+.|...... . .....||.|++|+||...+.+.
T Consensus 113 v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~----~---------------~~~~~fDlVv~NPPy~~~~~~~ 170 (251)
T TIGR03704 113 LHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALP----T---------------ALRGRVDILAANAPYVPTDAIA 170 (251)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcc----h---------------hcCCCEeEEEECCCCCCchhhh
Confidence 78999999999999999998773 455666543210 0 0014699999999999988876
Q ss_pred c-CcccccccC---cchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCc
Q 007036 82 K-APDIWRKWN---VGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 145 (620)
Q Consensus 82 K-~pdiw~~w~---~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~ 145 (620)
+ .|+....+. ...+..--..+++|+..|..+|++||++++.+..-. -++ |..+|++++-.
T Consensus 171 ~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~-v~~~l~~~g~~ 234 (251)
T TIGR03704 171 LMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APL-AVEAFARAGLI 234 (251)
T ss_pred cCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHH-HHHHHHHCCCC
Confidence 5 455422211 112334567899999999999999999999987533 234 45566666533
No 19
>PRK14967 putative methyltransferase; Provisional
Probab=97.88 E-value=0.0002 Score=71.93 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=80.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCC---Ccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP---CSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvP---CSGdG 78 (620)
|++.|+++..+.....++++.+. ++.+.+.|+.... ....||.|++++| |+..+
T Consensus 62 v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~----------------------~~~~fD~Vi~npPy~~~~~~~ 118 (223)
T PRK14967 62 VTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV----------------------EFRPFDVVVSNPPYVPAPPDA 118 (223)
T ss_pred EEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc----------------------cCCCeeEEEECCCCCCCCccc
Confidence 78999999999999999998886 5777777764321 1156999999975 77777
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEe
Q 007036 79 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELV 149 (620)
Q Consensus 79 tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLv 149 (620)
...+.++. .|... .....++.+++..+.++||+||++++.+-+++.. .-+-..|++.+-.++..
T Consensus 119 ~~~~~~~~--~~~~~--~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~---~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 119 PPSRGPAR--AWDAG--PDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGV---ERTLTRLSEAGLDAEVV 182 (223)
T ss_pred ccccChhH--hhhCC--CcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCH---HHHHHHHHHCCCCeEEE
Confidence 66666655 33321 1223456789999999999999999865555322 22445556654334433
No 20
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.85 E-value=0.00019 Score=72.18 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=80.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|++...+...+.+++..+..++.+.+.|+...- ....||.|++++|+...+.+.
T Consensus 114 v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----------------------~~~~fD~Vi~npPy~~~~~~~ 171 (251)
T TIGR03534 114 VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL----------------------PGGKFDLIVSNPPYIPEADIH 171 (251)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC----------------------cCCceeEEEECCCCCchhhhh
Confidence 6899999999999999999999888999988875410 125799999999999877665
Q ss_pred cCcccccccCcchh-----hhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLG-----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~-----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
......+.|.+... .++ ..-..++.++.++|++||.+++.+ +.. ..+-+..+|.+.+
T Consensus 172 ~~~~~~~~~e~~~~~~~~~~~~-~~~~~~i~~~~~~L~~gG~~~~~~-~~~---~~~~~~~~l~~~g 233 (251)
T TIGR03534 172 LLDPEVRFHEPRLALFGGEDGL-DFYRRIIAQAPRLLKPGGWLLLEI-GYD---QGEAVRALFEAAG 233 (251)
T ss_pred hcChhhhhcCCHHHHcCCCcHH-HHHHHHHHHHHHhcccCCEEEEEE-Ccc---HHHHHHHHHHhCC
Confidence 43222222222211 122 233579999999999999999863 332 2334566666654
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.59 E-value=0.00054 Score=67.59 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=74.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+++.++..++.++++++ ..++.+.+.|+..+... ....||+|++... .
T Consensus 68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--------------------~~~~~D~V~~~~~---~--- 121 (198)
T PRK00377 68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--------------------INEKFDRIFIGGG---S--- 121 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--------------------cCCCCCEEEECCC---c---
Confidence 7899999999999999999999 57888888887553210 0146999998421 0
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
. ....+|..+.++|||||++||.+|++ |+-.-+..+|++++-.++++.+
T Consensus 122 ---~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 122 ---E----------------KLKEIISASWEIIKKGGRIVIDAILL---ETVNNALSALENIGFNLEITEV 170 (198)
T ss_pred ---c----------------cHHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEE
Confidence 0 11467889999999999999999865 4556667777776645555554
No 22
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.58 E-value=0.00053 Score=80.44 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=83.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC--cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|++..-+...++|++..|.. ++.+.+.|+..+.. .....||.|+||+|.-+.+
T Consensus 564 V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~--------------------~~~~~fDlIilDPP~f~~~- 622 (702)
T PRK11783 564 TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLK--------------------EAREQFDLIFIDPPTFSNS- 622 (702)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHH--------------------HcCCCcCEEEECCCCCCCC-
Confidence 799999999999999999998875 68888888754310 0025799999999987743
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
++..++| ....-...|+..++++|++||.+++++|+-+-..+ .+++.+.+-.++++..
T Consensus 623 -~~~~~~~---------~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 623 -KRMEDSF---------DVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEITA 680 (702)
T ss_pred -Cccchhh---------hHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh----HHHHHhCCCeEEEEec
Confidence 1111111 22344678899999999999999999999766544 5555555545666654
No 23
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.52 E-value=0.001 Score=65.91 Aligned_cols=98 Identities=28% Similarity=0.303 Sum_probs=77.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|.+..|+.++..|+.|+|.+|+.|...||...-. ....||+|.+= |.|.
T Consensus 61 v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~---------------------~~~~~daiFIG----Gg~~-- 113 (187)
T COG2242 61 VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP---------------------DLPSPDAIFIG----GGGN-- 113 (187)
T ss_pred EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc---------------------CCCCCCEEEEC----CCCC--
Confidence 79999999999999999999999999999999955321 01268999872 2221
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 150 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd 150 (620)
.-.||..++..||+||+||--.- ..||++...+.+++.++. +++-
T Consensus 114 --------------------i~~ile~~~~~l~~ggrlV~nai---tlE~~~~a~~~~~~~g~~-ei~~ 158 (187)
T COG2242 114 --------------------IEEILEAAWERLKPGGRLVANAI---TLETLAKALEALEQLGGR-EIVQ 158 (187)
T ss_pred --------------------HHHHHHHHHHHcCcCCeEEEEee---cHHHHHHHHHHHHHcCCc-eEEE
Confidence 15689999999999999998543 468999999999999873 4433
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.46 E-value=0.00078 Score=59.21 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=62.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEcccc-CCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEA-QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da-~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|+|.|.++.-+...+.++.+.+ ..++.+.+.|+ ..+. ....||.|+++. -+..
T Consensus 28 v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------------------~~~~~D~v~~~~-~~~~-- 82 (112)
T PF12847_consen 28 VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD----------------------FLEPFDLVICSG-FTLH-- 82 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT----------------------TSSCEEEEEECS-GSGG--
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc----------------------cCCCCCEEEECC-Cccc--
Confidence 7899999999999999996655 47999999988 2211 125699999976 2111
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
....+ .-+.++|.+..++|+|||++|.+||
T Consensus 83 --------------~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 83 --------------FLLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp --------------GCCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred --------------cccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 11112 5678889999999999999999998
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.44 E-value=0.0019 Score=67.76 Aligned_cols=114 Identities=13% Similarity=0.127 Sum_probs=79.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+++.-+...++++++.+.. ++.+.+.|.... + ....||.|++|+|+...+.+
T Consensus 148 v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~--------------------~~~~fD~Iv~NPPy~~~~~~ 205 (284)
T TIGR03533 148 VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--L--------------------PGRKYDLIVSNPPYVDAEDM 205 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--c--------------------CCCCccEEEECCCCCCccch
Confidence 789999999999999999999975 688888876331 0 01469999999999887776
Q ss_pred ccCcccccccCcchh----hhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 81 RKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 81 rK~pdiw~~w~~~~~----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
...+..+. +.|..+ ..-.....+|+..+.++|++||+++.-+.. .. + -|..++..++
T Consensus 206 ~~l~~~~~-~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~--~-~v~~~~~~~~ 266 (284)
T TIGR03533 206 ADLPAEYH-HEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SM--E-ALEEAYPDVP 266 (284)
T ss_pred hhCCHhhh-cCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CH--H-HHHHHHHhCC
Confidence 54333232 333221 122357788999999999999999866552 22 3 4555665543
No 26
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.43 E-value=0.00069 Score=71.96 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=78.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+++.-+...++++++.+.. ++.+.+.|+.... ....||.|++++|+.+.+.+
T Consensus 160 V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----------------------~~~~fDlIvsNPPyi~~~~~ 217 (307)
T PRK11805 160 VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----------------------PGRRYDLIVSNPPYVDAEDM 217 (307)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC----------------------CCCCccEEEECCCCCCccch
Confidence 789999999999999999999975 5888888763311 01469999999999998776
Q ss_pred ccCcccccccCcchh-----hhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 81 RKAPDIWRKWNVGLG-----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 rK~pdiw~~w~~~~~-----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
..-+..+. +.|..+ .+| ....+|+.++.++|++||++++-+= .. .+-+..++..+
T Consensus 218 ~~l~~~~~-~eP~~AL~gg~dGl-~~~~~i~~~a~~~L~pgG~l~~E~g---~~--~~~~~~~~~~~ 277 (307)
T PRK11805 218 ADLPAEYR-HEPELALAAGDDGL-DLVRRILAEAPDYLTEDGVLVVEVG---NS--RVHLEEAYPDV 277 (307)
T ss_pred hhcCHhhc-cCccceeeCCCchH-HHHHHHHHHHHHhcCCCCEEEEEEC---cC--HHHHHHHHhhC
Confidence 54333332 334321 123 5677899999999999999987422 21 22256666554
No 27
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.32 E-value=0.0017 Score=71.33 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=84.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC--cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA--NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~--nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.+.+=+...++|++--|.. .+..+.+|+-.+-. . ......+||.|++||| +
T Consensus 243 vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~----~-------------~~~~g~~fDlIilDPP-----s 300 (393)
T COG1092 243 VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLR----K-------------AERRGEKFDLIILDPP-----S 300 (393)
T ss_pred eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHH----H-------------HHhcCCcccEEEECCc-----c
Confidence 789999999999999998877753 46778887744321 0 0112358999999999 4
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccH--HHHHHHHHhCCCceEEeeC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENE--AVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENE--aVV~~~L~~~~~~~eLvd~ 151 (620)
+-+++..- | +..+-=.+|+..|+++|+|||++|-||||-+-..++ ..|...+...+..++++..
T Consensus 301 F~r~k~~~--~------~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~ 366 (393)
T COG1092 301 FARSKKQE--F------SAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEG 366 (393)
T ss_pred cccCcccc--h------hHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeec
Confidence 44444431 2 223333688999999999999999999998877775 4556666555555666653
No 28
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.30 E-value=0.0023 Score=65.63 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=78.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|++...+...+.+++.....++.+.+.|..... ....||.|++++|+...+.+.
T Consensus 135 v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~----------------------~~~~fD~Iv~npPy~~~~~~~ 192 (275)
T PRK09328 135 VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL----------------------PGGRFDLIVSNPPYIPEADIH 192 (275)
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC----------------------CCCceeEEEECCCcCCcchhh
Confidence 7899999999999999988444567888888763210 025799999999999887665
Q ss_pred c-CcccccccCcch----hhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 82 K-APDIWRKWNVGL----GNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 82 K-~pdiw~~w~~~~----~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
. .+++ +.+.+.. +..-.....+++.++.++|++||+++..+. .. ..+ .+..+|.+.
T Consensus 193 ~~~~~v-~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~--~~~-~~~~~l~~~ 253 (275)
T PRK09328 193 LLQPEV-RDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YD--QGE-AVRALLAAA 253 (275)
T ss_pred hCCchh-hhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-ch--HHH-HHHHHHHhC
Confidence 2 2332 2233322 233446778999999999999999998543 22 222 355566654
No 29
>PRK14968 putative methyltransferase; Provisional
Probab=97.16 E-value=0.006 Score=58.45 Aligned_cols=116 Identities=20% Similarity=0.169 Sum_probs=76.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc--EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|+|.|.++.-+.....++...+..+ +.+...|..... ....||.|++++|....+.
T Consensus 48 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~----------------------~~~~~d~vi~n~p~~~~~~ 105 (188)
T PRK14968 48 VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF----------------------RGDKFDVILFNPPYLPTEE 105 (188)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----------------------cccCceEEEECCCcCCCCc
Confidence 6899999999998888888877765 666666653310 1136999999999865443
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
.....+ |..+.......-......++.++.++||+||.+++..+|+... +. +..++.+.+
T Consensus 106 ~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~--~~-l~~~~~~~g 165 (188)
T PRK14968 106 EEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGE--DE-VLEYLEKLG 165 (188)
T ss_pred hhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCH--HH-HHHHHHHCC
Confidence 222211 2222222222223456789999999999999999988887543 33 455666654
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.15 E-value=0.0023 Score=61.73 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=66.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.=+.....++++.+..++.+...|..... ....||.|++.+|
T Consensus 58 v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~----------------------~~~~fD~Iv~NPP-------- 107 (170)
T PF05175_consen 58 VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL----------------------PDGKFDLIVSNPP-------- 107 (170)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC----------------------CTTCEEEEEE-----------
T ss_pred EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc----------------------cccceeEEEEccc--------
Confidence 7899999999999999999999988888888764321 1268999999999
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHH
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 139 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L 139 (620)
. .... ..-..++.+++..|.++||+||+++...=+.. ..+..+++..
T Consensus 108 ----~----~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~--~~~~~l~~~f 154 (170)
T PF05175_consen 108 ----F----HAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHL--GYERLLKELF 154 (170)
T ss_dssp ----S----BTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS--CHHHHHHHHH
T ss_pred ----h----hccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCC--ChHHHHHHhc
Confidence 1 1111 12234678999999999999998854332322 3334444444
No 31
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.09 E-value=0.0029 Score=62.94 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=71.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEcccc-CCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEA-QHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da-~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|+|+++..+..+..++++.+.+|+.+.+.|+ ..++.. .....||.|++..|.
T Consensus 67 v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-------------------~~~~~~D~V~~~~~~------ 121 (202)
T PRK00121 67 FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-------------------FPDGSLDRIYLNFPD------ 121 (202)
T ss_pred EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH-------------------cCccccceEEEECCC------
Confidence 799999999999999999998888999999998 554311 012569999986541
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHh
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 141 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~ 141 (620)
-|.. .....-...+..+|.++.++|||||+++++|+ |+..+.++++.
T Consensus 122 -----p~~~---~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~ 168 (202)
T PRK00121 122 -----PWPK---KRHHKRRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLEV 168 (202)
T ss_pred -----CCCC---ccccccccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHH
Confidence 1211 10001112467899999999999999999885 55556566554
No 32
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.97 E-value=0.0019 Score=68.09 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=63.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC--CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT--ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~--~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.+..=+...++|++.-|. ..+..+..|+-.+-. .+ ....+||.|+||+|--+-|
T Consensus 149 v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~-~~-----------------~~~~~fD~IIlDPPsF~k~- 209 (286)
T PF10672_consen 149 VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLK-RL-----------------KKGGRFDLIILDPPSFAKS- 209 (286)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHH-HH-----------------HHTT-EEEEEE--SSEESS-
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHH-HH-----------------hcCCCCCEEEECCCCCCCC-
Confidence 78999999999999999988775 467778888744311 00 1125899999999966422
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhcc
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 131 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~EN 131 (620)
+|. +.+--.+|+.+|+++|++||.|+-||||-+-..+
T Consensus 210 ---------~~~------~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 210 ---------KFD------LERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp ---------TCE------HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred ---------HHH------HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 121 2233457899999999999999999999776665
No 33
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.93 E-value=0.0038 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=56.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++..+...+++++++|..|+.+...|+..... ....||+|++++++..
T Consensus 105 V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~---------------------~~~~fD~Ii~~~~~~~----- 158 (215)
T TIGR00080 105 VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE---------------------PLAPYDRIYVTAAGPK----- 158 (215)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---------------------ccCCCCEEEEcCCccc-----
Confidence 89999999999999999999999999999988865321 1146999999976532
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
++...+++|++||+||..
T Consensus 159 -----------------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 159 -----------------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred -----------------------ccHHHHHhcCcCcEEEEE
Confidence 112346789999999975
No 34
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.87 E-value=0.0076 Score=63.05 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=73.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|++...+....+|+++++..+ +.+...|.... + ....||.|++++|.-....+
T Consensus 141 v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~--------------------~~~~fDlIvsNPPyi~~~~~ 198 (284)
T TIGR00536 141 VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--L--------------------AGQKIDIIVSNPPYIDEEDL 198 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--C--------------------cCCCccEEEECCCCCCcchh
Confidence 7899999999999999999999864 88887776331 0 01369999999999876544
Q ss_pred ccCcccccccCcchh----hhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 81 RKAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 81 rK~pdiw~~w~~~~~----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
...++.. .|.|..+ ..=....++|+..|..+|++||.+++-++.-
T Consensus 199 ~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 199 ADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred hcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 3333332 2333211 1112377889999999999999999888753
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=96.81 E-value=0.013 Score=57.63 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=71.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|.+...+.++..++++.+..|+.+.+.|+..++. ...||.|++++ +
T Consensus 69 V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~----------------------~~~fD~I~s~~-------~- 118 (181)
T TIGR00138 69 LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH----------------------EEQFDVITSRA-------L- 118 (181)
T ss_pred EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc----------------------cCCccEEEehh-------h-
Confidence 78999999999999999999999899999998876421 15699999863 0
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC-CceEEeeCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE-GSVELVDVS 152 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~-~~~eLvd~~ 152 (620)
+.+ ..++..+.++|+|||+++.. .....+..+..+.+++. -.++.+++.
T Consensus 119 -----------------~~~-~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 119 -----------------ASL-NVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred -----------------hCH-HHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhhhhcCceEeecc
Confidence 000 13566678899999999975 35555666666666632 126666653
No 36
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.76 E-value=0.0027 Score=69.41 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=60.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|||+++.-+..+++|++..+..++.+++.|+..+-.. ....||.|.+|++ |+.+
T Consensus 72 Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~--------------------~~~~fDvIdlDPf--Gs~~-- 127 (374)
T TIGR00308 72 VFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY--------------------RNRKFHVIDIDPF--GTPA-- 127 (374)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--------------------hCCCCCEEEeCCC--CCcH--
Confidence 899999999999999999999988999999999765210 1146999999998 3221
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
..|..|++.++.||. +|-|||
T Consensus 128 ----------------------~fld~al~~~~~~gl-L~vTaT 148 (374)
T TIGR00308 128 ----------------------PFVDSAIQASAERGL-LLVTAT 148 (374)
T ss_pred ----------------------HHHHHHHHhcccCCE-EEEEec
Confidence 578889999998665 555654
No 37
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.75 E-value=0.011 Score=52.28 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=59.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.+...+....+++++++..++.+...|+..+... ....||.|+++.+
T Consensus 46 v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~D~v~~~~~-------- 97 (124)
T TIGR02469 46 VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--------------------SLPEPDRVFIGGS-------- 97 (124)
T ss_pred EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh--------------------hcCCCCEEEECCc--------
Confidence 789999999999999999999988888888877643210 1147999998531
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.+. ..+++..+.++||+||+++-+.
T Consensus 98 ----------------~~~-~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 ----------------GGL-LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----------------chh-HHHHHHHHHHHcCCCCEEEEEe
Confidence 011 2388999999999999998764
No 38
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.65 E-value=0.012 Score=48.50 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=61.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+++.|.+...+....+.....+..++.+...|...+.. .....||.|+++.+|...
T Consensus 24 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~d~i~~~~~~~~~---- 79 (107)
T cd02440 24 VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP--------------------EADESFDVIISDPPLHHL---- 79 (107)
T ss_pred EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc--------------------ccCCceEEEEEccceeeh----
Confidence 67899999888888765555556677777777766432 012569999999998765
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
...+..++.++..++++||.++++
T Consensus 80 -----------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -----------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 466788999999999999999987
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.63 E-value=0.013 Score=55.09 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=66.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++.-+...+..+++++..|+.+...|...++.. + . ..||.|++..++
T Consensus 31 i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~------------------~-~~~D~I~~~~~l------- 83 (152)
T PF13847_consen 31 IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L------------------E-EKFDIIISNGVL------- 83 (152)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S------------------S-TTEEEEEEESTG-------
T ss_pred EEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c------------------C-CCeeEEEEcCch-------
Confidence 789999999999999999999999999999999885531 1 1 579999999766
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
. .+ ..+..+|.++.++|++||+++-+.+.
T Consensus 84 -------~-------~~-~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 84 -------H-------HF-PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -------G-------GT-SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -------h-------hc-cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 0 01 11246788999999999999988888
No 40
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.56 E-value=0.006 Score=60.15 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=65.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|++...+.....++++.+..|+.+.+.|+..++...+ ....||.|++..|
T Consensus 43 v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------------~~~~~d~v~~~~p-------- 96 (194)
T TIGR00091 43 FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------------PDGSLSKVFLNFP-------- 96 (194)
T ss_pred EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC------------------CCCceeEEEEECC--------
Confidence 79999999999999999999999999999999976542100 1146899999866
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
+-|.+-. ..... -++..+|..+.++||+||.+..+|
T Consensus 97 ---dpw~k~~-h~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 97 ---DPWPKKR-HNKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ---CcCCCCC-ccccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 2232200 00011 125788999999999999998877
No 41
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.55 E-value=0.0047 Score=67.65 Aligned_cols=74 Identities=24% Similarity=0.213 Sum_probs=58.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|||+++.-++.+++|++..+..++.+.+.|+..+.. . ...||.|.+|+| |.+
T Consensus 84 V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~-------------------~--~~~fD~V~lDP~--Gs~--- 137 (382)
T PRK04338 84 VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH-------------------E--ERKFDVVDIDPF--GSP--- 137 (382)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh-------------------h--cCCCCEEEECCC--CCc---
Confidence 89999999999999999999999988899999865421 0 145999999998 443
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
...|..|+..+++||. +|.|
T Consensus 138 ---------------------~~~l~~al~~~~~~gi-lyvS 157 (382)
T PRK04338 138 ---------------------APFLDSAIRSVKRGGL-LCVT 157 (382)
T ss_pred ---------------------HHHHHHHHHHhcCCCE-EEEE
Confidence 1467778888999555 5555
No 42
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.54 E-value=0.0055 Score=65.06 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=46.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+|.|+++.-++..+.++++.|..|+.+...|+..+... ....||.|++|+|++|.+
T Consensus 198 V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--------------------~~~~~D~Vv~dPPr~G~~ 254 (315)
T PRK03522 198 LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--------------------QGEVPDLVLVNPPRRGIG 254 (315)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--------------------cCCCCeEEEECCCCCCcc
Confidence 789999999999999999999998899999998765310 013599999999987753
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=96.52 E-value=0.028 Score=55.26 Aligned_cols=91 Identities=26% Similarity=0.253 Sum_probs=65.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCC-CCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH-FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~-~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|.++..+..+++++++++..++.+.+.|+.. ++.+ ...+|+|.+|..
T Consensus 67 V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~---------------------~~~~d~v~~~~~------- 118 (196)
T PRK07402 67 VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL---------------------APAPDRVCIEGG------- 118 (196)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC---------------------CCCCCEEEEECC-------
Confidence 78999999999999999999999899998888743 1110 123677777521
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
. . -..+|..+.++|+|||++++.++++ |.-..+...+++.
T Consensus 119 -~------~------------~~~~l~~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~~ 158 (196)
T PRK07402 119 -R------P------------IKEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQL 158 (196)
T ss_pred -c------C------------HHHHHHHHHHhcCCCeEEEEEeecH---HHHHHHHHHHHhc
Confidence 0 0 1467899999999999999999873 2333455556554
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.52 E-value=0.023 Score=55.35 Aligned_cols=91 Identities=22% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++..+..++.++++.+..++.+.+.|+.. + + ...||.|+++.. ..
T Consensus 58 v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~---~-------------------~~~~D~v~~~~~------~~ 108 (187)
T PRK08287 58 VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E---L-------------------PGKADAIFIGGS------GG 108 (187)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h---c-------------------CcCCCEEEECCC------cc
Confidence 78999999999999999999988888888777531 1 0 146999998521 00
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
.+ ..++..+.++|++||+++++... .+|..-+..++++++
T Consensus 109 ---------------~~----~~~l~~~~~~Lk~gG~lv~~~~~---~~~~~~~~~~l~~~g 148 (187)
T PRK08287 109 ---------------NL----TAIIDWSLAHLHPGGRLVLTFIL---LENLHSALAHLEKCG 148 (187)
T ss_pred ---------------CH----HHHHHHHHHhcCCCeEEEEEEec---HhhHHHHHHHHHHCC
Confidence 01 24678899999999999996543 466677778888875
No 45
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0089 Score=64.49 Aligned_cols=89 Identities=25% Similarity=0.302 Sum_probs=71.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEcc-ccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~-Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+|++|+|.+.+.--+.|++.+|.....+... ||..+| +. ...||.|.+|+|=--.
T Consensus 222 viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l~--------------------~~~vdaIatDPPYGrs--- 277 (347)
T COG1041 222 VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-LR--------------------DNSVDAIATDPPYGRS--- 277 (347)
T ss_pred EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-CC--------------------CCccceEEecCCCCcc---
Confidence 7899999999999999999999887766665 999887 21 1369999999993211
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
+......|..|=.++|..+.+.||+||++|+.+=
T Consensus 278 ----------t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 278 ----------TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ----------cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 2223344889999999999999999999999875
No 46
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.35 E-value=0.019 Score=56.12 Aligned_cols=98 Identities=19% Similarity=0.182 Sum_probs=57.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.+ ..+++.+++.|+...+.+. . . . .......||.|++|+++...|.
T Consensus 60 v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~--~-l--------~--~~~~~~~~D~V~~~~~~~~~g~-- 113 (188)
T TIGR00438 60 VIAVDLQPMK-----------PIENVDFIRGDFTDEEVLN--K-I--------R--ERVGDDKVDVVMSDAAPNISGY-- 113 (188)
T ss_pred EEEEeccccc-----------cCCCceEEEeeCCChhHHH--H-H--------H--HHhCCCCccEEEcCCCCCCCCC--
Confidence 6888888754 2356666766765422100 0 0 0 0011256999999986544442
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHH
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVA 136 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~ 136 (620)
|+....... ..|..+|..++++|+|||+++... +.+.+-++++.
T Consensus 114 --------~~~~~~~~~-~~~~~~l~~~~~~LkpgG~lvi~~--~~~~~~~~~l~ 157 (188)
T TIGR00438 114 --------WDIDHLRSI-DLVELALDIAKEVLKPKGNFVVKV--FQGEEIDEYLN 157 (188)
T ss_pred --------ccccHHHHH-HHHHHHHHHHHHHccCCCEEEEEE--ccCccHHHHHH
Confidence 333322222 357889999999999999999864 33333344443
No 47
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.23 E-value=0.025 Score=56.22 Aligned_cols=74 Identities=19% Similarity=0.094 Sum_probs=56.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.++..+....+++++++..++.+...|+.... .....||+|+++.+|..
T Consensus 103 v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------------------~~~~~fD~I~~~~~~~~----- 156 (212)
T PRK00312 103 VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW---------------------PAYAPFDRILVTAAAPE----- 156 (212)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC---------------------CcCCCcCEEEEccCchh-----
Confidence 7899999999999999999999999999988874311 01156999999976521
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
+..+.+.+|++||+|+.+..
T Consensus 157 -----------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -----------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -----------------------hhHHHHHhcCCCcEEEEEEc
Confidence 11234678999999998754
No 48
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=95.95 E-value=0.038 Score=54.79 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=69.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|.+...+.+.+.+++..+..++.+.+.|+..++. ...||.|++..
T Consensus 72 V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~----------------------~~~fDlV~~~~--------- 120 (187)
T PRK00107 72 VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ----------------------EEKFDVVTSRA--------- 120 (187)
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC----------------------CCCccEEEEcc---------
Confidence 78999999999999999999999889999888876531 15799999852
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCc
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 145 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~ 145 (620)
+ . . + ..++..+.++|||||+++..-.+-.+ +.+..+....+..
T Consensus 121 -----~-----~---~---~-~~~l~~~~~~LkpGG~lv~~~~~~~~----~~l~~~~~~~~~~ 163 (187)
T PRK00107 121 -----V-----A---S---L-SDLVELCLPLLKPGGRFLALKGRDPE----EEIAELPKALGGK 163 (187)
T ss_pred -----c-----c---C---H-HHHHHHHHHhcCCCeEEEEEeCCChH----HHHHHHHHhcCce
Confidence 0 0 0 1 34778899999999999998766443 4455555555544
No 49
>PRK04266 fibrillarin; Provisional
Probab=95.89 E-value=0.089 Score=53.71 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=53.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++..+..+.+.+++. +|+.....|+.. |.... .....||.|++|.+
T Consensus 99 V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~-~~~~~-----------------~l~~~~D~i~~d~~-------- 150 (226)
T PRK04266 99 VYAVEFAPRPMRELLEVAEER--KNIIPILADARK-PERYA-----------------HVVEKVDVIYQDVA-------- 150 (226)
T ss_pred EEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC-cchhh-----------------hccccCCEEEECCC--------
Confidence 899999999999887777654 688888888764 21000 00145999998854
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
+| |. ...+|..+.++|||||++|-+
T Consensus 151 -~p-----~~----------~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 151 -QP-----NQ----------AEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -Ch-----hH----------HHHHHHHHHHhcCCCcEEEEE
Confidence 11 10 134578899999999999885
No 50
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.79 E-value=0.037 Score=55.48 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=41.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV 72 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDv 72 (620)
|++.|+++.-+...+++++++|..|+.+.+.|+...+. ....||+|+++.
T Consensus 104 V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~---------------------~~~~fD~I~~~~ 153 (212)
T PRK13942 104 VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE---------------------ENAPYDRIYVTA 153 (212)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---------------------cCCCcCEEEECC
Confidence 78999999999999999999999999999999865321 125699999864
No 51
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.73 E-value=0.062 Score=59.43 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=46.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCC-CCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|+|.|+++.-++....|+++.+..|+.+...|+..+ +... .....||.|++|+|.+|.
T Consensus 317 V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~------------------~~~~~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 317 VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP------------------WAGQIPDVLLLDPPRKGC 375 (431)
T ss_pred EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH------------------hcCCCCCEEEECcCCCCC
Confidence 799999999999999999999999999999988652 2110 011459999999997763
No 52
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=95.72 E-value=0.043 Score=60.41 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=71.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
++|.|++...+..+..++.+.|..|+.+++.||..+... + ....||+|.+=-
T Consensus 149 ~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~-~------------------~~~s~D~I~lnF--------- 200 (390)
T PRK14121 149 FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLEL-L------------------PSNSVEKIFVHF--------- 200 (390)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhh-C------------------CCCceeEEEEeC---------
Confidence 789999999999999999999999999999999765321 1 125689998743
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChh
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPV 129 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ 129 (620)
|+-|.+- + . .++ .|..+|..+.++|++||.+...|.+..-.
T Consensus 201 --PdPW~Kk-r-H-RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 201 --PVPWDKK-P-H-RRV--ISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred --CCCcccc-c-h-hhc--cHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 3334331 1 1 222 37899999999999999999999986654
No 53
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.59 E-value=0.071 Score=53.28 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=59.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++..+...++++++.+.+++.+...|+..++. ....||.|++.-. ++
T Consensus 73 v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------------------~~~~fD~V~~~~~------l~ 125 (231)
T TIGR02752 73 VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF---------------------DDNSFDYVTIGFG------LR 125 (231)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC---------------------CCCCccEEEEecc------cc
Confidence 78999999999999999999888899999998876541 1256999987421 21
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.-++ ..++|..+.++|+|||+++..+
T Consensus 126 ~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 126 NVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 1111 1357889999999999998653
No 54
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.54 E-value=0.021 Score=57.73 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=54.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++.-+..-++++.+++..|+.+...|+..-. .....||+|++.+-|.
T Consensus 100 Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~---------------------~~~apfD~I~v~~a~~------ 152 (209)
T PF01135_consen 100 VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW---------------------PEEAPFDRIIVTAAVP------ 152 (209)
T ss_dssp EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT---------------------GGG-SEEEEEESSBBS------
T ss_pred EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc---------------------ccCCCcCEEEEeeccc------
Confidence 7899999999999999999999999999999885411 1125699999998663
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
.-|..| ++.|++||+||-
T Consensus 153 ~ip~~l----------------------~~qL~~gGrLV~ 170 (209)
T PF01135_consen 153 EIPEAL----------------------LEQLKPGGRLVA 170 (209)
T ss_dssp S--HHH----------------------HHTEEEEEEEEE
T ss_pred hHHHHH----------------------HHhcCCCcEEEE
Confidence 344443 567899999996
No 55
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.52 E-value=4.9e-05 Score=79.70 Aligned_cols=133 Identities=23% Similarity=0.255 Sum_probs=89.7
Q ss_pred EEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHH---------HHHH
Q 007036 68 VLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAV---------VAEI 138 (620)
Q Consensus 68 ILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaV---------V~~~ 138 (620)
||++.+|++.+++|.|+..|..|........+.+|.+.+..+..++..++...|++|++.+.+|..+ ++.+
T Consensus 1 il~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~ 80 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALA 80 (283)
T ss_dssp HHHHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccccccccccc
Confidence 5788999999999999999888888777788888877777777777778888999999998877533 3444
Q ss_pred HHhCCCceEEeeCCCcCCCcccCCCccccccccCCccccchhhHHhhhccccCCCCCCCCCCCCCcCCCCCCCCCccccC
Q 007036 139 LRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVRKFRRIGIVPSMFPSGSSHMDATDIEPKHGNVTDVN 218 (620)
Q Consensus 139 L~~~~~~~eLvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~~~~~~~i~~smFp~~~~~~~~~~~~~~~~~~~~~n 218 (620)
|.-.++. .++|+- ..||-++= .+..-|...+
T Consensus 81 L~~~~~~-~VLD~C-------AapGgKt~---------------------~la~~~~~~g-------------------- 111 (283)
T PF01189_consen 81 LDPQPGE-RVLDMC-------AAPGGKTT---------------------HLAELMGNKG-------------------- 111 (283)
T ss_dssp HTTTTTS-EEEESS-------CTTSHHHH---------------------HHHHHTTTTS--------------------
T ss_pred ccccccc-cccccc-------cCCCCcee---------------------eeeecccchh--------------------
Confidence 4333332 244432 23442210 0122232221
Q ss_pred CccccchhhcccccCCchhhhhccccccceEEEccccCCCCceEEEEEE
Q 007036 219 SDEGLQQVEDVLTSADDLEEEVSDLPLERCMRLVPHDQNSGAFFIAVLQ 267 (620)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~rCmRi~Ph~q~TGGFFVAvL~ 267 (620)
.-.+.+++.+||.|+.+|.+.+|.++|.++.
T Consensus 112 ------------------~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~ 142 (283)
T PF01189_consen 112 ------------------EIVANDISPKRLKRLKENLKRLGVFNVIVIN 142 (283)
T ss_dssp ------------------EEEEEESSHHHHHHHHHHHHHTT-SSEEEEE
T ss_pred ------------------HHHHhccCHHHHHHHHHHHHhcCCceEEEEe
Confidence 1234577889999999999999999999997
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=95.48 E-value=0.077 Score=54.67 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=60.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.+..++...+++...++..++.+...|...+|. ....||.|++.. ++.
T Consensus 105 v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~---------------------~~~~fD~Vi~~~------v~~ 157 (272)
T PRK11873 105 VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV---------------------ADNSVDVIISNC------VIN 157 (272)
T ss_pred EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC---------------------CCCceeEEEEcC------ccc
Confidence 78999999999999999999998888877777765441 114699999762 111
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
..|+ ..++|..++++|||||+++.+.-.
T Consensus 158 ~~~d----------------~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 158 LSPD----------------KERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CCCC----------------HHHHHHHHHHHcCCCcEEEEEEee
Confidence 1111 136889999999999999987543
No 57
>PTZ00146 fibrillarin; Provisional
Probab=95.21 E-value=0.2 Score=53.28 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=49.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.-.+-|...+++. +||..+..|+.. |.. . ......||.||+|+.
T Consensus 160 VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~-p~~-y----------------~~~~~~vDvV~~Dva-------- 211 (293)
T PTZ00146 160 VYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARY-PQK-Y----------------RMLVPMVDVIFADVA-------- 211 (293)
T ss_pred EEEEECcHHHHHHHHHHhhhc--CCCEEEECCccC-hhh-h----------------hcccCCCCEEEEeCC--------
Confidence 899999955454555554432 688888888864 210 0 001146999999984
Q ss_pred cCcccccccCcchhhhhHHHHHHHHH-HHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~-rAl~lLk~GG~LVYS 122 (620)
.|+ |.+++. +|..+||+||+++-+
T Consensus 212 -~pd----------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 212 -QPD----------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred -Ccc----------------hHHHHHHHHHHhccCCCEEEEE
Confidence 121 555554 678899999998883
No 58
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=95.16 E-value=0.068 Score=59.54 Aligned_cols=59 Identities=17% Similarity=0.091 Sum_probs=46.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|+|.|++..-+.....|+++.+..|+.+.+.|+..+-. . .......||.|++|+|++|.
T Consensus 322 V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~-------------~~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 322 VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----D-------------QPWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----h-------------hhhhcCCCCEEEECcCCcCh
Confidence 78999999999999999999999999999998865310 0 00112469999999999864
No 59
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=94.90 E-value=0.055 Score=52.79 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=42.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+|+.|+++++||++-+|+ .+|...+.|+..+..- . .. ...||.|++|+|--|-.-.
T Consensus 24 Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~-----~------------~~-~~~~D~vFlSPPWGGp~Y~ 85 (163)
T PF09445_consen 24 VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR-----L------------KS-NKIFDVVFLSPPWGGPSYS 85 (163)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG-----B-------------------SEEEE---BSSGGGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh-----c------------cc-cccccEEEECCCCCCcccc
Confidence 89999999999999999999995 5899999998664210 0 00 0128999999999997766
Q ss_pred cc
Q 007036 81 RK 82 (620)
Q Consensus 81 rK 82 (620)
++
T Consensus 86 ~~ 87 (163)
T PF09445_consen 86 KK 87 (163)
T ss_dssp GS
T ss_pred cc
Confidence 54
No 60
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=94.85 E-value=0.071 Score=53.62 Aligned_cols=72 Identities=33% Similarity=0.407 Sum_probs=52.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|+|.++.=++.|..++++-++.+ +.+++.|+..++. ...||||++.-|=+..
T Consensus 128 V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----------------------~~~~drvim~lp~~~~--- 182 (200)
T PF02475_consen 128 VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----------------------EGKFDRVIMNLPESSL--- 182 (200)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------------------------TT-EEEEEE--TSSGG---
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----------------------ccccCEEEECChHHHH---
Confidence 8999999999999999999988775 7799999988753 2679999998773222
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
..|..|+.+++.||.+-|
T Consensus 183 -----------------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 183 -----------------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -----------------------GGHHHHHHHEEEEEEEEE
T ss_pred -----------------------HHHHHHHHHhcCCcEEEC
Confidence 245668999999999987
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.77 E-value=0.15 Score=50.69 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=53.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|+++.-+.....++++++.. ++.+.+.|+..... ....||+|+++..+.
T Consensus 100 V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~---------------------~~~~fD~Ii~~~~~~----- 153 (205)
T PRK13944 100 VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE---------------------KHAPFDAIIVTAAAS----- 153 (205)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc---------------------cCCCccEEEEccCcc-----
Confidence 789999999999999999999875 58888888865221 114699999986531
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
. + + ...++.|++||+||..
T Consensus 154 -~---~-----~--------------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 154 -T---I-----P--------------SALVRQLKDGGVLVIP 172 (205)
T ss_pred -h---h-----h--------------HHHHHhcCcCcEEEEE
Confidence 0 0 1 1345789999999884
No 62
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.75 E-value=0.35 Score=49.66 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=59.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+|+..+....+++++.++. .+.+... ...||.|++...
T Consensus 145 v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----------------------------~~~fD~Vvani~------- 188 (250)
T PRK00517 145 VLAVDIDPQAVEAARENAELNGVELNVYLPQG-----------------------------DLKADVIVANIL------- 188 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----------------------------CCCcCEEEEcCc-------
Confidence 789999999999999999887762 2211100 026999997521
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEee
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 150 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd 150 (620)
......++..+.++||+||++|.|.... . ..+-+...+.+++ ++++.
T Consensus 189 ------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~--~-~~~~v~~~l~~~G--f~~~~ 235 (250)
T PRK00517 189 ------------------ANPLLELAPDLARLLKPGGRLILSGILE--E-QADEVLEAYEEAG--FTLDE 235 (250)
T ss_pred ------------------HHHHHHHHHHHHHhcCCCcEEEEEECcH--h-hHHHHHHHHHHCC--CEEEE
Confidence 1223567889999999999999986543 2 3334455666664 44444
No 63
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=94.75 E-value=0.26 Score=51.78 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=59.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+|+..+...+.++.+.+... +.+...+...+ ....||.|+++..+
T Consensus 185 V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----------------------~~~~fDlVvan~~~------ 235 (288)
T TIGR00406 185 VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----------------------IEGKADVIVANILA------ 235 (288)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----------------------cCCCceEEEEecCH------
Confidence 7899999999999999999877653 33333321110 12579999986421
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHh
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 141 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~ 141 (620)
..-.+++.++.++|||||+++.|... ..+-+.| ..++++
T Consensus 236 -------------------~~l~~ll~~~~~~LkpgG~li~sgi~--~~~~~~v-~~~~~~ 274 (288)
T TIGR00406 236 -------------------EVIKELYPQFSRLVKPGGWLILSGIL--ETQAQSV-CDAYEQ 274 (288)
T ss_pred -------------------HHHHHHHHHHHHHcCCCcEEEEEeCc--HhHHHHH-HHHHHc
Confidence 11146888999999999999998853 3333344 444444
No 64
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.74 E-value=0.094 Score=52.58 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=57.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++.-+..+.+|+++++..++.+.+.|+..+-. .....||.|++|+|= +
T Consensus 79 V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~--------------------~~~~~fDlV~~DPPy------~ 132 (199)
T PRK10909 79 ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA--------------------QPGTPHNVVFVDPPF------R 132 (199)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh--------------------hcCCCceEEEECCCC------C
Confidence 78999999999999999999998899999888754310 001359999999992 1
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
.++.....++|.. ..+|+++| +||.-|+-
T Consensus 133 --------------~g~~~~~l~~l~~-~~~l~~~~-iv~ve~~~ 161 (199)
T PRK10909 133 --------------KGLLEETINLLED-NGWLADEA-LIYVESEV 161 (199)
T ss_pred --------------CChHHHHHHHHHH-CCCcCCCc-EEEEEecC
Confidence 1233334455544 35678855 66655553
No 65
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.70 E-value=0.053 Score=45.34 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=50.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.+...++..+++.+. .++.+...|+..+|- ....||.|++--
T Consensus 22 v~~~D~~~~~~~~~~~~~~~---~~~~~~~~d~~~l~~---------------------~~~sfD~v~~~~--------- 68 (95)
T PF08241_consen 22 VTGIDISEEMLEQARKRLKN---EGVSFRQGDAEDLPF---------------------PDNSFDVVFSNS--------- 68 (95)
T ss_dssp EEEEES-HHHHHHHHHHTTT---STEEEEESBTTSSSS----------------------TT-EEEEEEES---------
T ss_pred EEEEeCCHHHHHHHHhcccc---cCchheeehHHhCcc---------------------cccccccccccc---------
Confidence 78999999977776665544 344578888888752 126799998631
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
.|..+ .-+.++|..+.+.|||||++|.
T Consensus 69 ----~~~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 ----VLHHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HGGGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----ceeec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 11111 4567899999999999999873
No 66
>PRK00811 spermidine synthase; Provisional
Probab=94.65 E-value=0.19 Score=52.86 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=67.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-----CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 76 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSG 76 (620)
|+++|+|+.-+.+.+..+..++ -+++.+...||..|-. ....+||.|++|++
T Consensus 103 V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--------------------~~~~~yDvIi~D~~--- 159 (283)
T PRK00811 103 ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--------------------ETENSFDVIIVDST--- 159 (283)
T ss_pred EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--------------------hCCCcccEEEECCC---
Confidence 7899999999999988887653 4678999999976521 01257999999974
Q ss_pred ccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHh
Q 007036 77 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 141 (620)
Q Consensus 77 dGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~ 141 (620)
.| |.+. .+-...+.+..+.+.|++||++|.-+-| |......+..+++.
T Consensus 160 ------dp-----~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~--~~~~~~~~~~i~~t 207 (283)
T PRK00811 160 ------DP-----VGPA----EGLFTKEFYENCKRALKEDGIFVAQSGS--PFYQADEIKDMHRK 207 (283)
T ss_pred ------CC-----CCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCC--cccCHHHHHHHHHH
Confidence 11 1111 1223568888899999999998865333 33344455555544
No 67
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.13 Score=52.07 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=53.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.+..=+..-+.+++++|..||.|.+.|+..= ......||+|++-+-+.
T Consensus 97 V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G---------------------~~~~aPyD~I~Vtaaa~------ 149 (209)
T COG2518 97 VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG---------------------WPEEAPYDRIIVTAAAP------ 149 (209)
T ss_pred EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC---------------------CCCCCCcCEEEEeeccC------
Confidence 678888877777778889999999999999999651 11236799999976532
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
.-|..| ++.||+||+||--
T Consensus 150 ~vP~~L----------------------l~QL~~gGrlv~P 168 (209)
T COG2518 150 EVPEAL----------------------LDQLKPGGRLVIP 168 (209)
T ss_pred CCCHHH----------------------HHhcccCCEEEEE
Confidence 233332 5679999999973
No 68
>PRK04457 spermidine synthase; Provisional
Probab=94.25 E-value=0.23 Score=51.72 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=68.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|+|+.-+...+..+..-+ .+++.+...|+..+-. .....||.|++|+- .+.+.
T Consensus 93 v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~--------------------~~~~~yD~I~~D~~-~~~~~- 150 (262)
T PRK04457 93 QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA--------------------VHRHSTDVILVDGF-DGEGI- 150 (262)
T ss_pred EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH--------------------hCCCCCCEEEEeCC-CCCCC-
Confidence 7899999998888776654333 3678899999876521 01256999999963 22221
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG 144 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~ 144 (620)
|. +-...+++..+.+.|+|||+++.-.++-.+. ...+++.+-+.+++
T Consensus 151 ---~~-------------~l~t~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~F~~ 197 (262)
T PRK04457 151 ---ID-------------ALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESSFEG 197 (262)
T ss_pred ---cc-------------ccCcHHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHhcCC
Confidence 10 1114688999999999999999866554442 34455655444543
No 69
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=94.11 E-value=0.32 Score=52.80 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=78.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|+|+|+.=++.|++|++.-+..+ +.+.+.|+..++.. ...||||+.=-|=
T Consensus 214 V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~---------------------~~~aDrIim~~p~------ 266 (341)
T COG2520 214 VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE---------------------LGVADRIIMGLPK------ 266 (341)
T ss_pred EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---------------------cccCCEEEeCCCC------
Confidence 8999999999999999999888877 77899999887631 1568999875542
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE-eecCCChhc--cHHHHHHHHHhCCCceEEeeCCCcCCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY-STCSMNPVE--NEAVVAEILRKCEGSVELVDVSNEVPQ 157 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY-STCSlnP~E--NEaVV~~~L~~~~~~~eLvd~~~~lp~ 157 (620)
.+.+.|..|+.+++.||.|.| .+|--+..+ .+..+..+-.+.+-.++..+..- .-
T Consensus 267 --------------------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~-Vk- 324 (341)
T COG2520 267 --------------------SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRR-VK- 324 (341)
T ss_pred --------------------cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEE-ec-
Confidence 234567889999999997754 555555443 34555555555533344444311 11
Q ss_pred cccCCCcccc
Q 007036 158 LIHRPGLRKW 167 (620)
Q Consensus 158 l~~~pGl~~W 167 (620)
..+||+..|
T Consensus 325 -sysP~v~hv 333 (341)
T COG2520 325 -SYSPGVYHV 333 (341)
T ss_pred -ccCCCeeEE
Confidence 156775443
No 70
>PRK08317 hypothetical protein; Provisional
Probab=94.11 E-value=0.35 Score=47.51 Aligned_cols=96 Identities=19% Similarity=0.163 Sum_probs=61.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.++.++.....+.. ....++.+...|+..++. ....||.|++...
T Consensus 47 v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~~---------------------~~~~~D~v~~~~~-------- 96 (241)
T PRK08317 47 VVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLPF---------------------PDGSFDAVRSDRV-------- 96 (241)
T ss_pred EEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCCC---------------------CCCCceEEEEech--------
Confidence 6899999998887776622 234577888888766541 1256999987521
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCC----hhccHHHHHHHHHh
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN----PVENEAVVAEILRK 141 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSln----P~ENEaVV~~~L~~ 141 (620)
+..+ .-+..+|.++.++||+||+++.+.+... ...+...+..++..
T Consensus 97 -----~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (241)
T PRK08317 97 -----LQHL---------EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNF 146 (241)
T ss_pred -----hhcc---------CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHH
Confidence 1111 0125678899999999999998876432 12344455555543
No 71
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.10 E-value=0.55 Score=50.88 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=62.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|++..-+...+.++++.+... .+...|.... ....||.|++++|= .+|.
T Consensus 223 v~~vDis~~Al~~A~~nl~~n~l~~-~~~~~D~~~~-----------------------~~~~fDlIvsNPPF-H~g~-- 275 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAANGLEG-EVFASNVFSD-----------------------IKGRFDMIISNPPF-HDGI-- 275 (342)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCC-EEEEcccccc-----------------------cCCCccEEEECCCc-cCCc--
Confidence 7899999999999998998877643 4444444211 02569999999882 1110
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhc
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 130 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~E 130 (620)
.+. + ..=.+++..|.+.||+||.++..+.++.|-+
T Consensus 276 -------~~~------~-~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 276 -------QTS------L-DAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred -------ccc------H-HHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 111 1 1126789999999999999999999999876
No 72
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=93.97 E-value=0.69 Score=51.58 Aligned_cols=115 Identities=13% Similarity=0.111 Sum_probs=72.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.-+...+.|+++.+. ++.+.+.|...... .....||.|++++|=...+-..
T Consensus 278 VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l--------------------~~~~~FDLIVSNPPYI~~~e~~ 336 (423)
T PRK14966 278 VRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM--------------------PSEGKWDIIVSNPPYIENGDKH 336 (423)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc--------------------ccCCCccEEEECCCCCCcchhh
Confidence 78999999999999999999886 78888877643210 0014699999999965544321
Q ss_pred cCcccccccCcchh-----hhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLG-----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~-----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
..+.. .++.|..+ .+|. .=++|+..+.+.|++||.+++-. ....- +-|..++.+.+
T Consensus 337 l~~~~-v~~EP~~AL~gG~dGL~-~yr~Ii~~a~~~LkpgG~lilEi---G~~Q~-e~V~~ll~~~G 397 (423)
T PRK14966 337 LLQGD-LRFEPQIALTDFSDGLS-CIRTLAQGAPDRLAEGGFLLLEH---GFDQG-AAVRGVLAENG 397 (423)
T ss_pred hcchh-hhcCHHHHhhCCCchHH-HHHHHHHHHHHhcCCCcEEEEEE---CccHH-HHHHHHHHHCC
Confidence 11111 12222211 1222 24589999999999999987533 33333 34555666553
No 73
>PRK03612 spermidine synthase; Provisional
Probab=93.91 E-value=0.17 Score=57.69 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=64.6
Q ss_pred EEEEcCChhHHHHHHHH--HHHh-----CCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCC
Q 007036 2 VIANDLDVQRCNLLIHQ--TKRM-----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 74 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~--~kRl-----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPC 74 (620)
|++.|+|+.=+++.+++ +..+ .-+++.+.+.|+..+-. ....+||.|++|.|-
T Consensus 324 v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--------------------~~~~~fDvIi~D~~~ 383 (521)
T PRK03612 324 VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--------------------KLAEKFDVIIVDLPD 383 (521)
T ss_pred EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--------------------hCCCCCCEEEEeCCC
Confidence 68999999988888873 3333 33688889999876521 012579999999763
Q ss_pred ccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 75 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 75 SGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
.. .|... . -...+++..+.+.|||||+++-.++|.. -.......+++
T Consensus 384 ~~------~~~~~---------~--L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~ 430 (521)
T PRK03612 384 PS------NPALG---------K--LYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEA 430 (521)
T ss_pred CC------Ccchh---------c--cchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHH
Confidence 21 11111 1 1126678888999999999988776543 33444444443
No 74
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=93.82 E-value=0.2 Score=52.04 Aligned_cols=91 Identities=26% Similarity=0.381 Sum_probs=63.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCC--CCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQH--FPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~--~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+..|.+..|+..-+.+++++|.. |+.+.+.|... |+. .....||.|++|.|
T Consensus 68 v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~--------------------~~~~~~DavfLDlp----- 122 (247)
T PF08704_consen 68 VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE--------------------ELESDFDAVFLDLP----- 122 (247)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST--------------------T-TTSEEEEEEESS-----
T ss_pred EEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc--------------------cccCcccEEEEeCC-----
Confidence 788999999999999999999986 89999988743 210 01257999999988
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHHhhc-ccCCEE-EEeecCCChhccHHHHHHHHHhCC
Q 007036 79 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLL-KVGGRI-VYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 79 tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lL-k~GG~L-VYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
+ -|. .|.++.+.| |+||++ +||.|- |-=.-.-.+|++++
T Consensus 123 ----~-----Pw~-------------~i~~~~~~L~~~gG~i~~fsP~i----eQv~~~~~~L~~~g 163 (247)
T PF08704_consen 123 ----D-----PWE-------------AIPHAKRALKKPGGRICCFSPCI----EQVQKTVEALREHG 163 (247)
T ss_dssp ----S-----GGG-------------GHHHHHHHE-EEEEEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred ----C-----HHH-------------HHHHHHHHHhcCCceEEEECCCH----HHHHHHHHHHHHCC
Confidence 2 232 356788889 898865 688884 22222334455654
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.80 E-value=0.35 Score=47.48 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=61.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+++.|+|.+-+..-..|+++.|.. .+.+.+.|+..++. ....||.|++|+|
T Consensus 64 ~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~---------------------~~~~~d~IvtnPP------- 115 (179)
T PF01170_consen 64 IIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL---------------------PDGSVDAIVTNPP------- 115 (179)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG---------------------TTSBSCEEEEE---------
T ss_pred EEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc---------------------ccCCCCEEEECcc-------
Confidence 689999999999999999999986 47788889988761 1257999999999
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
|.. .......+..+=.+++..+.+.|++ ++||-|++
T Consensus 116 ------yG~-r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~ 151 (179)
T PF01170_consen 116 ------YGR-RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTS 151 (179)
T ss_dssp ------STT-SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEES
T ss_pred ------hhh-hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEC
Confidence 222 1122334567777888999998988 66776665
No 76
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.27 Score=51.19 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=59.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+..|++..+++.-..|++.+|..+ +.+...|....- ....||.|.+|.|
T Consensus 122 v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~----------------------~~~~vDav~LDmp------- 172 (256)
T COG2519 122 VTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI----------------------DEEDVDAVFLDLP------- 172 (256)
T ss_pred EEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc----------------------cccccCEEEEcCC-------
Confidence 7889999999999999999999877 666666665421 1147999999987
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCE-EEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGR-IVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~-LVYSTCS 125 (620)
+ -| +.|.++.++|||||. ++|+.|.
T Consensus 173 ----~---PW-------------~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 173 ----D---PW-------------NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ----C---hH-------------HHHHHHHHHhCCCcEEEEEcCCH
Confidence 2 23 457899999999984 6798886
No 77
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.75 E-value=0.47 Score=49.16 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=66.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+..|+|..=+..+.+..++.|.+ +.+..+|.+.- ++.. -..+||.++.|+|=+-.|.
T Consensus 70 I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~----LP~~---------------~~~~fD~f~TDPPyT~~G~-- 127 (243)
T PF01861_consen 70 ITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDP----LPEE---------------LRGKFDVFFTDPPYTPEGL-- 127 (243)
T ss_dssp EEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS-------TT---------------TSS-BSEEEE---SSHHHH--
T ss_pred EEEEEcCHHHHHHHHHHHHHcCCc-eEEEEeccccc----CCHH---------------HhcCCCEEEeCCCCCHHHH--
Confidence 677899999999999999999998 99999999762 1111 1378999999999665552
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh--hccHHHHHHHHHhCCCceEEeeCCCcCCCcc
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP--VENEAVVAEILRKCEGSVELVDVSNEVPQLI 159 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP--~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~ 159 (620)
.-.|.||++.||.-|..+|=-+|-.+ .+-=.-|+++|.+.+ +-+-++ +|.+.
T Consensus 128 ---------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~g--l~i~di---i~~Fn 181 (243)
T PF01861_consen 128 ---------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMG--LVITDI---IPDFN 181 (243)
T ss_dssp ---------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS----EEEEE---EEEEE
T ss_pred ---------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCC--cCHHHH---Hhhhc
Confidence 34688999999987756676666654 222235778887765 444443 55554
Q ss_pred cCCC
Q 007036 160 HRPG 163 (620)
Q Consensus 160 ~~pG 163 (620)
+..|
T Consensus 182 ~Y~g 185 (243)
T PF01861_consen 182 RYEG 185 (243)
T ss_dssp EB--
T ss_pred cccc
Confidence 4443
No 78
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.47 E-value=0.26 Score=55.16 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=49.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+|.|+++.=....++|+++.|..|+.+...++..+.... .....||.||+|+|=+|-+
T Consensus 318 V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~------------------~~~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 318 VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW------------------WEGYKPDVVVVDPPRAGAD 376 (432)
T ss_pred EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc------------------cccCCCCEEEECCCCCCCC
Confidence 7899999999999999999999999999999998875321 1235789999999977764
No 79
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.46 E-value=0.28 Score=50.19 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=59.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCC-CCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|+++.++...++++++.|.. ++.+...|+... +.+. . ......||.|++|+.
T Consensus 96 v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~--~--------------~~~~~~fD~VfiDa~------ 153 (234)
T PLN02781 96 ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLL--N--------------NDPKPEFDFAFVDAD------ 153 (234)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHH--h--------------CCCCCCCCEEEECCC------
Confidence 789999999999999999999975 688888888653 1110 0 001257999999975
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
| +. . ..++..++++|+|||.||.-.+
T Consensus 154 --k-~~---------------y-~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 154 --K-PN---------------Y-VHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred --H-HH---------------H-HHHHHHHHHhcCCCeEEEEEcC
Confidence 1 00 0 2457788999999999996443
No 80
>PLN02244 tocopherol O-methyltransferase
Probab=93.42 E-value=0.44 Score=51.31 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=58.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|+++.-+....+++++.+. .++.+...|+..+|. ....||.|++- +++
T Consensus 144 v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~---------------------~~~~FD~V~s~------~~~ 196 (340)
T PLN02244 144 VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF---------------------EDGQFDLVWSM------ESG 196 (340)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC---------------------CCCCccEEEEC------Cch
Confidence 78999999988888888887776 468888888877652 12579999862 111
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
..-++ ..++|..+.++|||||+++-+++.
T Consensus 197 ~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 197 EHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 11111 146788899999999999988753
No 81
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.23 E-value=0.7 Score=52.64 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=72.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+++.-+...+.|+++.+.. ++.+.+.|.... + ....||.|++++|=-.....
T Consensus 165 v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~--------------------~~~~fDlIvsNPPYi~~~~~ 222 (506)
T PRK01544 165 VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--I--------------------EKQKFDFIVSNPPYISHSEK 222 (506)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--C--------------------cCCCccEEEECCCCCCchhh
Confidence 789999999999999999998864 577777775321 0 01469999999996654432
Q ss_pred c-cCcccccccCcch-----hhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 81 R-KAPDIWRKWNVGL-----GNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 r-K~pdiw~~w~~~~-----~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
- ..+++ ..+.|.. ..+|. .=++|+..+..+|++||.++.. ++.+ .-++ |..++.+.
T Consensus 223 ~~l~~~v-~~~EP~~AL~gg~dGl~-~~~~il~~a~~~L~~gG~l~lE-ig~~--q~~~-v~~~~~~~ 284 (506)
T PRK01544 223 SEMAIET-INYEPSIALFAEEDGLQ-AYFIIAENAKQFLKPNGKIILE-IGFK--QEEA-VTQIFLDH 284 (506)
T ss_pred hhcCchh-hccCcHHHhcCCccHHH-HHHHHHHHHHHhccCCCEEEEE-ECCc--hHHH-HHHHHHhc
Confidence 1 11122 1222221 11222 3467899999999999999874 4443 3334 45555544
No 82
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=93.21 E-value=0.64 Score=50.06 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=54.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|.+.+-+...+.+....+. .++.+...|+..+|. ....||.|++- +++
T Consensus 156 V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---------------------~~~~FD~Vi~~------~vL 208 (322)
T PLN02396 156 VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---------------------EGRKFDAVLSL------EVI 208 (322)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---------------------ccCCCCEEEEh------hHH
Confidence 78999999988888766544332 477788888766542 12579999872 122
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
..-++ ...+|....++|||||+++.+|
T Consensus 209 eHv~d----------------~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVAN----------------PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcCC----------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 22111 1357788889999999999886
No 83
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.21 E-value=0.31 Score=50.00 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=61.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.++.=+..-+..+++.+..++.....||..+|- ....||.|.| | -| +|
T Consensus 75 v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~---------------------~d~sfD~v~~----~-fg-lr 127 (233)
T PF01209_consen 75 VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF---------------------PDNSFDAVTC----S-FG-LR 127 (233)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S----------------------TT-EEEEEE----E-S--GG
T ss_pred EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC---------------------CCCceeEEEH----H-hh-HH
Confidence 78999999999988989999888899999999999873 1267999985 1 12 22
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
.-|| +.+.|....+.|||||+++--- ++.-+|. ++..+..-+
T Consensus 128 n~~d----------------~~~~l~E~~RVLkPGG~l~ile--~~~p~~~-~~~~~~~~y 169 (233)
T PF01209_consen 128 NFPD----------------RERALREMYRVLKPGGRLVILE--FSKPRNP-LLRALYKFY 169 (233)
T ss_dssp G-SS----------------HHHHHHHHHHHEEEEEEEEEEE--EEB-SSH-HHHHHHHH-
T ss_pred hhCC----------------HHHHHHHHHHHcCCCeEEEEee--ccCCCCc-hhhceeeee
Confidence 2222 2457899999999999998643 4444554 555555443
No 84
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.18 E-value=0.27 Score=50.34 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=60.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|+++.-+...+.++++.|. .++.+.+.|+..++.. ....||.|+|... +
T Consensus 69 v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--------------------~~~~fD~V~~~~v------l 122 (255)
T PRK11036 69 VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--------------------LETPVDLILFHAV------L 122 (255)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh--------------------cCCCCCEEEehhH------H
Confidence 78999999999999999998886 5788888888665321 1257999997422 1
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
.|-. . ...+|..+.++|||||+++-...+.+
T Consensus 123 --------~~~~-------~-~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 123 --------EWVA-------D-PKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred --------HhhC-------C-HHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 1110 0 13678899999999999986555543
No 85
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=93.03 E-value=0.5 Score=49.15 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=63.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhC----CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|++.|+|+.-+...++.+..++ .+++.+...|+..+-. .....||.|++|++-. .
T Consensus 99 v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~--------------------~~~~~yDvIi~D~~~~-~ 157 (270)
T TIGR00417 99 ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA--------------------DTENTFDVIIVDSTDP-V 157 (270)
T ss_pred EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH--------------------hCCCCccEEEEeCCCC-C
Confidence 6789999988888887776543 3567777777755311 0125799999997621 1
Q ss_pred cccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 78 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 78 GtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
| +. ..| ...+.+.++.++|++||+++..+||.. -+...+..+++
T Consensus 158 ~-------------~~--~~l--~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~ 201 (270)
T TIGR00417 158 G-------------PA--ETL--FTKEFYELLKKALNEDGIFVAQSESPW--IQLELITDLKR 201 (270)
T ss_pred C-------------cc--cch--hHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHHHHH
Confidence 1 10 111 225777888999999999998877533 33444444443
No 86
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=92.97 E-value=0.32 Score=53.13 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=43.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 73 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvP 73 (620)
|+|.|+++.-++..++|++.++..|+.+.+.|+..+... ....||.|++|+|
T Consensus 258 v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--------------------~~~~~D~vi~DPP 309 (374)
T TIGR02085 258 LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--------------------QMSAPELVLVNPP 309 (374)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--------------------cCCCCCEEEECCC
Confidence 789999999999999999999998999999988654210 0134999999999
No 87
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=92.96 E-value=0.25 Score=50.49 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=58.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEc-cccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTN-HEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn-~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.++.|..+-++++++.|..+ +.+.. .|+...-. ......||.|++|+-
T Consensus 87 l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~-------------------~~~~~~fDliFIDad------ 141 (219)
T COG4122 87 LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS-------------------RLLDGSFDLVFIDAD------ 141 (219)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH-------------------hccCCCccEEEEeCC------
Confidence 7899999999999999999999987 55555 36644211 012378999999973
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
+. .....|.+++.+|+|||.||-=-
T Consensus 142 --------K~-----------~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 142 --------KA-----------DYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred --------hh-----------hCHHHHHHHHHHhCCCcEEEEee
Confidence 11 22567888999999999998633
No 88
>PRK01581 speE spermidine synthase; Validated
Probab=92.82 E-value=0.43 Score=52.36 Aligned_cols=99 Identities=22% Similarity=0.249 Sum_probs=63.0
Q ss_pred EEEEcCChhHHHHHHH--HHH---H--hCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCC
Q 007036 2 VIANDLDVQRCNLLIH--QTK---R--MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 74 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~--~~k---R--lg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPC 74 (620)
|++.|+|+.-+.+-+. .+. + +.-+++.+...||..|-.. ....||.|++|+|
T Consensus 177 It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~--------------------~~~~YDVIIvDl~- 235 (374)
T PRK01581 177 VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS--------------------PSSLYDVIIIDFP- 235 (374)
T ss_pred EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--------------------cCCCccEEEEcCC-
Confidence 7899999987777664 111 1 2357899999999775310 1257999999965
Q ss_pred ccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHH
Q 007036 75 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEIL 139 (620)
Q Consensus 75 SGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L 139 (620)
|... . ....| ...+.+..+.+.|+|||++|.-.- +|.....++..+.
T Consensus 236 --DP~~-----------~-~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~~~~i~ 282 (374)
T PRK01581 236 --DPAT-----------E-LLSTL--YTSELFARIATFLTEDGAFVCQSN--SPADAPLVYWSIG 282 (374)
T ss_pred --Cccc-----------c-chhhh--hHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHHHHHHH
Confidence 2110 0 01112 236788889999999999877643 4455555644443
No 89
>PLN02476 O-methyltransferase
Probab=92.39 E-value=0.33 Score=51.25 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=60.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCC-CCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.++.++..-+.++++.|.. ++.+...||... +.+. .......||.|++|++
T Consensus 146 V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~----------------~~~~~~~FD~VFIDa~------ 203 (278)
T PLN02476 146 LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI----------------QNGEGSSYDFAFVDAD------ 203 (278)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH----------------hcccCCCCCEEEECCC------
Confidence 789999999999999999999986 788999988653 2110 0011257999999986
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
| ..=...+..++++|++||.||.=-.
T Consensus 204 --K-----------------~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 204 --K-----------------RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred --H-----------------HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 1 1114556778899999999997433
No 90
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=92.09 E-value=0.12 Score=51.79 Aligned_cols=77 Identities=21% Similarity=0.161 Sum_probs=62.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.+.|++|...+.+|++--|..|+.|++.||+.+.. ...|.|+|.-
T Consensus 57 ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-----------------------e~ADvvicEm--------- 104 (252)
T COG4076 57 VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-----------------------ENADVVICEM--------- 104 (252)
T ss_pred EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-----------------------cccceeHHHH---------
Confidence 89999999999999999988888999999999988742 3457887642
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
-+..-+-+-|...+.+++++||-.+.+|=
T Consensus 105 -----------lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 -----------LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -----------hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 12234567799999999999999887763
No 91
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=91.96 E-value=0.54 Score=48.65 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=65.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|++..-|..-+..++..|..++..+..||..+|- ....||.|.+-= .+|
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf---------------------~D~sFD~vt~~f------glr 130 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF---------------------PDNSFDAVTISF------GLR 130 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC---------------------CCCccCEEEeee------hhh
Confidence 78999999999999988888888888999999999882 126799997631 122
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHH
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAV 134 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaV 134 (620)
.-+|+ -+.|..+.+-|||||++ ..+.+++-++.-+
T Consensus 131 nv~d~----------------~~aL~E~~RVlKpgG~~--~vle~~~p~~~~~ 165 (238)
T COG2226 131 NVTDI----------------DKALKEMYRVLKPGGRL--LVLEFSKPDNPVL 165 (238)
T ss_pred cCCCH----------------HHHHHHHHHhhcCCeEE--EEEEcCCCCchhh
Confidence 22332 45788889999999954 4677777766443
No 92
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=91.71 E-value=1.8 Score=46.38 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=49.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|.+..-+.......+..+ ..++.+...|...+|. ...||.|++ .|++
T Consensus 148 V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----------------------~~~FD~V~s------~~vl 199 (322)
T PRK15068 148 VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----------------------LKAFDTVFS------MGVL 199 (322)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----------------------cCCcCEEEE------CChh
Confidence 7899988743322111112223 3477777777766542 256999995 2334
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
....+ + ..+|.++.+.|+|||++|.+|-.
T Consensus 200 ~H~~d------p----------~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 200 YHRRS------P----------LDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred hccCC------H----------HHHHHHHHHhcCCCcEEEEEEEE
Confidence 32111 1 35788999999999999988643
No 93
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.66 E-value=0.5 Score=47.22 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=56.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
++..|.|.+=+..|++|++.|+ ..++.+...|+..+... . .....||.|++|+|=-
T Consensus 69 ~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~----~--------------~~~~~FDlVflDPPy~----- 125 (187)
T COG0742 69 VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ----L--------------GTREPFDLVFLDPPYA----- 125 (187)
T ss_pred EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh----c--------------CCCCcccEEEeCCCCc-----
Confidence 6889999999999999999999 46788888999754211 0 0113599999999921
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHH-HHHhhcccCCEEEE
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVY 121 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~-rAl~lLk~GG~LVY 121 (620)
.++...+..++. .--.+|++||.+|-
T Consensus 126 ---------------~~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 126 ---------------KGLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred ---------------cchhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 223332333333 33467999777664
No 94
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.63 E-value=0.68 Score=49.86 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=40.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV 72 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDv 72 (620)
|++.|.++..+...+.+++++|..++.+...|+...+. ....||.|++++
T Consensus 108 VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~---------------------~~~~fD~Ii~~~ 157 (322)
T PRK13943 108 VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP---------------------EFAPYDVIFVTV 157 (322)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc---------------------ccCCccEEEECC
Confidence 78999999999999999999999999888888755321 014599999974
No 95
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.40 E-value=0.34 Score=42.19 Aligned_cols=74 Identities=26% Similarity=0.307 Sum_probs=52.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+++.|+++.-+...+++.+..+. ++.....|+..++. ....||.|++ +|.. +
T Consensus 27 ~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~---------------------~~~~~D~v~~----~~~~-~- 78 (101)
T PF13649_consen 27 VIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF---------------------SDGKFDLVVC----SGLS-L- 78 (101)
T ss_dssp EEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH---------------------HSSSEEEEEE-----TTG-G-
T ss_pred EEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc---------------------cCCCeeEEEE----cCCc-c-
Confidence 68999999999999999888666 77778888877541 1257999998 1111 0
Q ss_pred cCcccccccCcchhhhhH-HHHHHHHHHHHhhcccCC
Q 007036 82 KAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGG 117 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~-~lQ~~IL~rAl~lLk~GG 117 (620)
..+. ..+.++|.+.+++|||||
T Consensus 79 --------------~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 --------------HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------------GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------------CCCCHHHHHHHHHHHHHHhCCCC
Confidence 1122 234789999999999998
No 96
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.19 E-value=1.3 Score=45.90 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=55.8
Q ss_pred EEEEcCChhHHHHHHHHHH---HhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTK---RMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~k---Rlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+|.|+++.-+.....+.. ..+..++.+.+.|+..+|- ....||.|++- .
T Consensus 101 V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~sfD~V~~~-----~- 153 (261)
T PLN02233 101 VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF---------------------DDCYFDAITMG-----Y- 153 (261)
T ss_pred EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC---------------------CCCCEeEEEEe-----c-
Confidence 7899999887766654432 2235688889999887652 12569999852 1
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 79 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 79 tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
+++.-++ ..++|..+.+.|||||+++-++.+-
T Consensus 154 ~l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 154 GLRNVVD----------------RLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ccccCCC----------------HHHHHHHHHHHcCcCcEEEEEECCC
Confidence 1221111 2567899999999999999987763
No 97
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=91.15 E-value=3.1 Score=41.92 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=73.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.-+..++.|++++ ..++.++..|.+.|. ..||-++-++| -|+.+
T Consensus 71 V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~------------------------~~~dtvimNPP---FG~~~ 122 (198)
T COG2263 71 VLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFR------------------------GKFDTVIMNPP---FGSQR 122 (198)
T ss_pred EEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcC------------------------CccceEEECCC---Ccccc
Confidence 799999999999999999994 467888999988864 56899999999 45557
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVEL 148 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eL 148 (620)
|++| +..|..|++.. .+||| ++..-+++-|..+-...++.+..
T Consensus 123 rhaD-----------------r~Fl~~Ale~s----~vVYs---iH~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 123 RHAD-----------------RPFLLKALEIS----DVVYS---IHKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccCC-----------------HHHHHHHHHhh----heEEE---eeccccHHHHHHHHHhcCCeEEE
Confidence 7766 34566777774 66996 55555888888888888765443
No 98
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=91.00 E-value=1.7 Score=46.69 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=22.4
Q ss_pred HHHHHHHHhhcccCCEEEEeecCCChhc
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSMNPVE 130 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSlnP~E 130 (620)
...|....+.||+||+||.+|..+...+
T Consensus 205 ~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 205 LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 3478889999999999999987665433
No 99
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=90.86 E-value=0.88 Score=45.71 Aligned_cols=85 Identities=19% Similarity=0.057 Sum_probs=49.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcC-C-Cccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV-P-CSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDv-P-CSGdGt 79 (620)
|+|.|+++- .+.+++.+.+.|+...+.+. .- . .......||.|++|. | ++|+.
T Consensus 79 V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~--~i---------~--~~~~~~~~D~V~S~~~~~~~g~~- 133 (209)
T PRK11188 79 VIACDILPM-----------DPIVGVDFLQGDFRDELVLK--AL---------L--ERVGDSKVQVVMSDMAPNMSGTP- 133 (209)
T ss_pred EEEEecccc-----------cCCCCcEEEecCCCChHHHH--HH---------H--HHhCCCCCCEEecCCCCccCCCh-
Confidence 778888761 13467778888876643100 00 0 001125799999985 3 33321
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.. +......+...+|..+.++|||||++|-.+
T Consensus 134 -----------~~-d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 134 -----------AV-DIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred -----------HH-HHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 11 111112224679999999999999998864
No 100
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=90.79 E-value=0.47 Score=47.33 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=65.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+|+.|+...|+......+.+.+.+|+.+++.||..+-... .....+|+|.+==|
T Consensus 44 ~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~------------------~~~~~v~~i~i~FP-------- 97 (195)
T PF02390_consen 44 FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRL------------------FPPGSVDRIYINFP-------- 97 (195)
T ss_dssp EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHH------------------STTTSEEEEEEES---------
T ss_pred EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhc------------------ccCCchheEEEeCC--------
Confidence 6899999999999999999999999999999997732111 11245777776543
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
|=|.+-.. .-.. -+|...|......|++||.|...|= ++....++++
T Consensus 98 ---DPWpK~rH-~krR--l~~~~fl~~~~~~L~~gG~l~~~TD------~~~y~~~~~~ 144 (195)
T PF02390_consen 98 ---DPWPKKRH-HKRR--LVNPEFLELLARVLKPGGELYFATD------VEEYAEWMLE 144 (195)
T ss_dssp -------SGGG-GGGS--TTSHHHHHHHHHHEEEEEEEEEEES-------HHHHHHHHH
T ss_pred ---CCCcccch-hhhh--cCCchHHHHHHHHcCCCCEEEEEeC------CHHHHHHHHH
Confidence 43443111 1111 2466778888899999999988773 3444444443
No 101
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.78 E-value=0.18 Score=49.93 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=38.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 73 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvP 73 (620)
|++.|.|++-+..|++|++.++..+ +.+.+.|+..+-.- .......||.|++|||
T Consensus 68 v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~-----------------~~~~~~~fDiIflDPP 123 (183)
T PF03602_consen 68 VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLK-----------------LAKKGEKFDIIFLDPP 123 (183)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHH-----------------HHHCTS-EEEEEE--S
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHh-----------------hcccCCCceEEEECCC
Confidence 7899999999999999999999886 88888887543110 0012368999999999
No 102
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=90.63 E-value=1.1 Score=44.39 Aligned_cols=80 Identities=15% Similarity=-0.006 Sum_probs=55.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.=+..++..+...+..++.+...|...++. ...||.|++ ++ ++.
T Consensus 55 V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~----------------------~~~fD~I~~----~~--~~~ 106 (197)
T PRK11207 55 VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF----------------------DGEYDFILS----TV--VLM 106 (197)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc----------------------CCCcCEEEE----ec--chh
Confidence 78999999988888888888788777777777654321 145999985 21 110
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
-+.+ .....++.+..++|||||.+++.+
T Consensus 107 -------~~~~-------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 -------FLEA-------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred -------hCCH-------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0111 124678899999999999976644
No 103
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=90.53 E-value=1 Score=44.64 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=57.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+++.|.+...+.....++.+.+..++.+...|+..++.- ....||.|++.-. +
T Consensus 70 v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--------------------~~~~~D~i~~~~~------l- 122 (224)
T TIGR01983 70 VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK--------------------GAKSFDVVTCMEV------L- 122 (224)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC--------------------CCCCccEEEehhH------H-
Confidence 678999999988888888877765677777777655420 0256999997311 1
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
... . -...+|.++.++|++||.++.++|.
T Consensus 123 ------~~~--------~-~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 123 ------EHV--------P-DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ------HhC--------C-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 010 1 1246889999999999999988874
No 104
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.81 E-value=0.72 Score=47.35 Aligned_cols=98 Identities=18% Similarity=0.178 Sum_probs=70.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
.|+.|+....+..+...+++++++|+.++++||..+-.... .....|+|.+-=
T Consensus 75 fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~------------------~~~sl~~I~i~F--------- 127 (227)
T COG0220 75 FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI------------------PDGSLDKIYINF--------- 127 (227)
T ss_pred EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC------------------CCCCeeEEEEEC---------
Confidence 68999999999999999999999999999999987532111 113567777643
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHH
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAE 137 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~ 137 (620)
||=|-+-.- ..=--+|...|...++.||+||.|-..|= ||....+
T Consensus 128 --PDPWpKkRH---~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD------~~~y~e~ 172 (227)
T COG0220 128 --PDPWPKKRH---HKRRLTQPEFLKLYARKLKPGGVLHFATD------NEEYFEW 172 (227)
T ss_pred --CCCCCCccc---cccccCCHHHHHHHHHHccCCCEEEEEec------CHHHHHH
Confidence 454543211 11112678888999999999999999994 5555555
No 105
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=89.81 E-value=1.6 Score=42.62 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=53.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+++.|+++..+.....+.. ...++.+...|+..++. ....||.|++- ..+.
T Consensus 67 ~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~---------------------~~~~~D~i~~~------~~~~ 117 (223)
T TIGR01934 67 VTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF---------------------EDNSFDAVTIA------FGLR 117 (223)
T ss_pred EEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC---------------------CCCcEEEEEEe------eeeC
Confidence 6889999988888877665 33467777777766541 11469999862 1111
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
.-+ +. ..+|.++..+|++||+++..+.+.
T Consensus 118 ~~~---------~~-------~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 118 NVT---------DI-------QKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred Ccc---------cH-------HHHHHHHHHHcCCCcEEEEEEecC
Confidence 111 11 357899999999999999877653
No 106
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=89.77 E-value=0.36 Score=48.65 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=59.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCC-CCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.++.+...-+.++++.|.. +|.+...||..+ +.+. .......||.|++|+.
T Consensus 73 i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~----------------~~~~~~~fD~VFiDa~------ 130 (205)
T PF01596_consen 73 ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA----------------NDGEEGQFDFVFIDAD------ 130 (205)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH----------------HTTTTTSEEEEEEEST------
T ss_pred EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH----------------hccCCCceeEEEEccc------
Confidence 789999999999999999999974 789999988653 2110 0011257999999984
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
+. .....+..++++|++||.||.--.=
T Consensus 131 --------K~-----------~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 131 --------KR-----------NYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp --------GG-----------GHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred --------cc-----------chhhHHHHHhhhccCCeEEEEcccc
Confidence 11 1134566678899999999985443
No 107
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=89.60 E-value=0.76 Score=49.93 Aligned_cols=101 Identities=24% Similarity=0.313 Sum_probs=62.3
Q ss_pred CEEEEcCChhHHH-------HHHHHHHHhCCCc--EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEc
Q 007036 1 MVIANDLDVQRCN-------LLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCD 71 (620)
Q Consensus 1 ~VvAnD~d~kR~~-------~L~~~~kRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlD 71 (620)
+|++-|+|..-++ -+..|++..|+.. +-|...|.+.-| + .....||.|+||
T Consensus 232 ~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-~-------------------rsn~~fDaIvcD 291 (421)
T KOG2671|consen 232 YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-L-------------------RSNLKFDAIVCD 291 (421)
T ss_pred eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-h-------------------hhcceeeEEEeC
Confidence 4778888876555 4678899998542 446667776633 1 124789999999
Q ss_pred CCCccccccccC----c------cccc-ccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 72 VPCSGDGTLRKA----P------DIWR-KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 72 vPCSGdGtlrK~----p------diw~-~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
+|--==--.||- + +.-. .........|..+=-.||.=+...|.-||++|.
T Consensus 292 PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~ 352 (421)
T KOG2671|consen 292 PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVF 352 (421)
T ss_pred CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence 995321111111 0 0000 001122345556666788888999999999986
No 108
>PLN02823 spermine synthase
Probab=89.44 E-value=1.3 Score=47.99 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=55.2
Q ss_pred EEEEcCChhHHHHHHHHHHHh----CCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRl----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|++.|+|+.=+++.+..+... .-+++.+...||..|-. ....+||.|++|++ |
T Consensus 130 v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~--------------------~~~~~yDvIi~D~~---d 186 (336)
T PLN02823 130 VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE--------------------KRDEKFDVIIGDLA---D 186 (336)
T ss_pred EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh--------------------hCCCCccEEEecCC---C
Confidence 688999999888888776432 34788999999987631 01257999999974 1
Q ss_pred cccccCcccccccCcchhhhhHHHHHHHHH-HHHhhcccCCEEEEe
Q 007036 78 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVYS 122 (620)
Q Consensus 78 GtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~-rAl~lLk~GG~LVYS 122 (620)
.. ..... .+-...+.+. .+.+.|++||.+|--
T Consensus 187 p~-----------~~~~~--~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 187 PV-----------EGGPC--YQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cc-----------ccCcc--hhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 10 00000 1122345565 567899999988753
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=89.43 E-value=1.9 Score=45.72 Aligned_cols=108 Identities=12% Similarity=0.067 Sum_probs=65.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++.=+...+++ .+++.+.+.|+..+.. ..+||.|++++|--....-.
T Consensus 91 V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~~----------------------~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 91 IVCVELNPEFARIGKRL-----LPEAEWITSDVFEFES----------------------NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred EEEEECCHHHHHHHHHh-----CcCCEEEECchhhhcc----------------------cCCCcEEEEcCCccccCchh
Confidence 78999998644444332 3577788888866431 15699999999976543211
Q ss_pred cCcccccccCcchhhhhHHH-HHHHHHHHHhhcccCCEE--EEee-----cCCChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSL-QVQIAMRGISLLKVGGRI--VYST-----CSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~l-Q~~IL~rAl~lLk~GG~L--VYST-----CSlnP~ENEaVV~~~L~~~~ 143 (620)
.. -|-.|+-. ......+ =.+.|..+..+|+|+|.+ +||. .|+.|.| ...+|+.++
T Consensus 144 ~~--~~~~~~GG-~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~----y~~~l~~~g 206 (279)
T PHA03411 144 TK--DVFEYTGG-EFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNK----YLKWSKQTG 206 (279)
T ss_pred hh--hhhhhccC-ccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHH----HHHHHHhcC
Confidence 11 12222211 1111111 246788888899999954 5776 6777744 566777775
No 110
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=89.30 E-value=1.4 Score=44.12 Aligned_cols=84 Identities=19% Similarity=0.176 Sum_probs=56.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.++..+.....++.+.+. ++.+...|+..++.. ....||.|++.-.+..
T Consensus 73 v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~fD~Ii~~~~l~~----- 126 (233)
T PRK05134 73 VTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE--------------------HPGQFDVVTCMEMLEH----- 126 (233)
T ss_pred EEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh--------------------cCCCccEEEEhhHhhc-----
Confidence 68899999999988888877765 455555555544310 1257999998422111
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 128 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP 128 (620)
.++ ...+|.++.++|++||+++.+++.-.+
T Consensus 127 -~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~~~ 156 (233)
T PRK05134 127 -VPD----------------PASFVRACAKLVKPGGLVFFSTLNRNL 156 (233)
T ss_pred -cCC----------------HHHHHHHHHHHcCCCcEEEEEecCCCh
Confidence 111 135789999999999999999876443
No 111
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.00 E-value=4.8 Score=42.45 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=73.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc---
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG--- 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG--- 78 (620)
|+|.|+++.=+..-+.|+++.|..++.+...| .|..+ ..+||.|++-+|==-.-
T Consensus 137 V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~---------------------~~~fDlIVsNPPYip~~~~~ 193 (280)
T COG2890 137 VIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPL---------------------RGKFDLIVSNPPYIPAEDPE 193 (280)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCccEEEEeee--ccccc---------------------CCceeEEEeCCCCCCCcccc
Confidence 89999999999999999999998665555443 33321 14799999999953332
Q ss_pred ----ccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 79 ----TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 79 ----tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
.++..|.. --|.-. .+|. .=++|+..+...|++||.++. =++.+. .+.|.+++.+.+. +..+..
T Consensus 194 ~~~~~~~~EP~~-Al~~g~--dGl~-~~~~i~~~a~~~l~~~g~l~l-e~g~~q---~~~v~~~~~~~~~-~~~v~~ 261 (280)
T COG2890 194 LLPEVVRYEPLL-ALVGGG--DGLE-VYRRILGEAPDILKPGGVLIL-EIGLTQ---GEAVKALFEDTGF-FEIVET 261 (280)
T ss_pred cChhhhccCHHH-HHccCc--cHHH-HHHHHHHhhHHHcCCCcEEEE-EECCCc---HHHHHHHHHhcCC-ceEEEE
Confidence 11112211 012222 2333 336899999999999776654 555554 3445555555543 444433
No 112
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=88.88 E-value=1.5 Score=45.79 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=75.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|++..=..+..++++--+. .++.|.+.|...+.... ....||.|+|-+|==-.|.-
T Consensus 71 I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~-------------------~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 71 IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL-------------------VFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-------------------cccccCEEEeCCCCCCCccc
Confidence 68899998888888888877554 47999999998876421 12469999999997666654
Q ss_pred ccCcccccccCcchhhhhHHH---HHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSL---QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~l---Q~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
++++- .....-|.. =..++..|.++||+||++.+ ++|.|.=.=|-.+|+++
T Consensus 132 -~~~~~------~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~----V~r~erl~ei~~~l~~~ 185 (248)
T COG4123 132 -LNENP------LRAIARHEITLDLEDLIRAAAKLLKPGGRLAF----VHRPERLAEIIELLKSY 185 (248)
T ss_pred -cCcCh------hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE----EecHHHHHHHHHHHHhc
Confidence 33322 111111111 14678999999999999877 35555544455556654
No 113
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.71 E-value=2.8 Score=41.48 Aligned_cols=82 Identities=22% Similarity=0.188 Sum_probs=55.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|++...+...+.++...+. .++.+...|+..++. ....||.|++. ..+
T Consensus 79 v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---------------------~~~~~D~I~~~------~~l 131 (239)
T PRK00216 79 VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF---------------------PDNSFDAVTIA------FGL 131 (239)
T ss_pred EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC---------------------CCCCccEEEEe------ccc
Confidence 68999999999988888766443 457777777765431 12569999752 111
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
...+ + -..+|..+..+|++||++++++-+.
T Consensus 132 ~~~~---------~-------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 132 RNVP---------D-------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred ccCC---------C-------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 1111 1 1467889999999999999876554
No 114
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=88.55 E-value=1.2 Score=48.51 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=33.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 37 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~ 37 (620)
|+|.|++..=+..+++|++..++.|+.+.+.|+..+
T Consensus 231 v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~ 266 (362)
T PRK05031 231 VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEF 266 (362)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHH
Confidence 799999999999999999999999999999998664
No 115
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=88.36 E-value=2.4 Score=43.44 Aligned_cols=79 Identities=18% Similarity=0.039 Sum_probs=56.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|.++.-+...+.++.+.+.. ++.+...|+..+|. ..||.|++- .++
T Consensus 85 v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-----------------------~~~D~vv~~------~~l 135 (247)
T PRK15451 85 IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-----------------------ENASMVVLN------FTL 135 (247)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----------------------CCCCEEehh------hHH
Confidence 789999999999999999888764 68888887765431 236766531 011
Q ss_pred ccCcccccccCcchhhhhH-HHHHHHHHHHHhhcccCCEEEEeec
Q 007036 81 RKAPDIWRKWNVGLGNGLH-SLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~-~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
. -+. ..+..+|.+..+.|||||.++.+.-
T Consensus 136 ~---------------~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 Q---------------FLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred H---------------hCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 0 111 1246789999999999999999874
No 116
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=88.33 E-value=1.7 Score=47.25 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=39.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCC-CCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANK-NFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~-~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+|.|++..=+..-++|++.-++.|+.....++..+....... .+.. ..........+|.||+|||=+|-+
T Consensus 221 V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~------~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 221 VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNR------LKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTT------GGGS-GGCTTESEEEE---TT-SC
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHh------hhhhhhhhcCCCEEEEcCCCCCch
Confidence 7899999999999999999999999999888776553210000 0000 000011124689999999988864
No 117
>PHA03412 putative methyltransferase; Provisional
Probab=87.68 E-value=1.8 Score=44.86 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=53.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.=+...+.++ +++.+.+.|+..++. ..+||.|++.+|=.-...
T Consensus 79 V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~----------------------~~~FDlIIsNPPY~~~~~-- 129 (241)
T PHA03412 79 IVCVELNHTYYKLGKRIV-----PEATWINADALTTEF----------------------DTLFDMAISNPPFGKIKT-- 129 (241)
T ss_pred EEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc----------------------cCCccEEEECCCCCCccc--
Confidence 789999998776666543 456778888765431 147999999999654321
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
..+. ....=..+-.+++.+|++|+++|+.|+.
T Consensus 130 ------~d~~--ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 130 ------SDFK--GKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred ------cccC--CcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 1110 0011134557799999999999776553
No 118
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.52 E-value=4 Score=45.64 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=58.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.-+..-.++...++ .++.+...|+...+- ....||.|++- +++.
T Consensus 292 v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~---------------------~~~~fD~I~s~------~~l~ 343 (475)
T PLN02336 292 VVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY---------------------PDNSFDVIYSR------DTIL 343 (475)
T ss_pred EEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC---------------------CCCCEEEEEEC------Cccc
Confidence 7899999876666555554332 356677777655331 11569999973 2221
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
.-++ ..++|..+.++|||||+|+.++-...+..-..-...++...
T Consensus 344 h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 388 (475)
T PLN02336 344 HIQD----------------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR 388 (475)
T ss_pred ccCC----------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc
Confidence 1111 24788999999999999998875444322222234444443
No 119
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=87.28 E-value=7.4 Score=43.00 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=58.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC---CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~---~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|++.|+++.=+...+++++..+. .++.+...|+.. .+ ...+||.|+|.+|---..
T Consensus 255 V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~--~~--------------------~~~~fDlIlsNPPfh~~~ 312 (378)
T PRK15001 255 VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS--GV--------------------EPFRFNAVLCNPPFHQQH 312 (378)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc--cC--------------------CCCCEEEEEECcCcccCc
Confidence 78999999888888888877653 255655555421 10 114699999999964211
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh
Q 007036 79 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 128 (620)
Q Consensus 79 tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP 128 (620)
. ++. ..-.+++..|.+.|++||++...+=...+
T Consensus 313 ~----------~~~-------~ia~~l~~~a~~~LkpGG~L~iV~nr~l~ 345 (378)
T PRK15001 313 A----------LTD-------NVAWEMFHHARRCLKINGELYIVANRHLD 345 (378)
T ss_pred c----------CCH-------HHHHHHHHHHHHhcccCCEEEEEEecCcC
Confidence 1 111 11246899999999999998887644433
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=86.98 E-value=2.9 Score=44.68 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=59.4
Q ss_pred EEEEcCChhHHHHHHHHHHH-hCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKR-MCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kR-lg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
++..|+|+..+..-+..+++ .+.. ++.+..+|+..++. ....||.|+|+|= -
T Consensus 152 ~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~---------------------~l~~FDlVF~~AL-i---- 205 (296)
T PLN03075 152 FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE---------------------SLKEYDVVFLAAL-V---- 205 (296)
T ss_pred EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc---------------------ccCCcCEEEEecc-c----
Confidence 67899999999998888865 7764 48888888866431 0156999999831 1
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.|.. .-+.++|.+..+.|+|||.+++-+
T Consensus 206 ---------~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 206 ---------GMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ---------cccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 2221 123789999999999999999855
No 121
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=86.81 E-value=2.3 Score=43.26 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+++|+++..+.....+. . .+.+...|+..+|. ....||.|++...
T Consensus 67 v~~~D~s~~~l~~a~~~~---~--~~~~~~~d~~~~~~---------------------~~~~fD~V~s~~~-------- 112 (251)
T PRK10258 67 VTALDLSPPMLAQARQKD---A--ADHYLAGDIESLPL---------------------ATATFDLAWSNLA-------- 112 (251)
T ss_pred EEEEECCHHHHHHHHhhC---C--CCCEEEcCcccCcC---------------------CCCcEEEEEECch--------
Confidence 789999987666554432 1 22345566655441 1256999986321
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
+ .|... ...+|.++.+.|||||.+++||-
T Consensus 113 ----l--~~~~d--------~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 113 ----V--QWCGN--------LSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ----h--hhcCC--------HHHHHHHHHHHcCCCeEEEEEeC
Confidence 1 23221 25778999999999999999874
No 122
>PLN02366 spermidine synthase
Probab=86.76 E-value=2.3 Score=45.58 Aligned_cols=83 Identities=10% Similarity=0.075 Sum_probs=54.3
Q ss_pred EEEEcCChhHHHHHHHHHHHh----CCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRl----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|+..|+|+.=+..-+..+..+ .-+++.+...||..|-. . .....||.|++|.+-. .
T Consensus 118 V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~----~---------------~~~~~yDvIi~D~~dp-~ 177 (308)
T PLN02366 118 IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK----N---------------APEGTYDAIIVDSSDP-V 177 (308)
T ss_pred EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh----h---------------ccCCCCCEEEEcCCCC-C
Confidence 577888887666665555443 34678999999876521 0 0125699999997521 1
Q ss_pred cccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 78 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 78 GtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
| + .-+-...+.+..+.+.|++||.+|-
T Consensus 178 ~-------------~----~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 178 G-------------P----AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred C-------------c----hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1 1 1112347788899999999999864
No 123
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=86.25 E-value=3 Score=41.13 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=50.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.-+..+.+++...+.+ +.+...|...++. ...||.|++-... .
T Consensus 55 V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~----------------------~~~fD~I~~~~~~------~ 105 (195)
T TIGR00477 55 VRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL----------------------NEDYDFIFSTVVF------M 105 (195)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc----------------------cCCCCEEEEeccc------c
Confidence 789999998888888877776764 5555555433220 1458999853221 1
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
..++ .....++..+.++|||||+++..+
T Consensus 106 -------~~~~-------~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 106 -------FLQA-------GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred -------cCCH-------HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 0011 123477889999999999966543
No 124
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=85.95 E-value=3.1 Score=43.21 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=51.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEE-cCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLC-DVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILl-DvPCSGdGtl 80 (620)
|++.|+++.-+.....+... ..++.+...|+...|- ....||.|++ ++-+
T Consensus 78 v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~---------------------~~~~FD~V~s~~~l~------ 128 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF---------------------PENTFDMIYSRDAIL------ 128 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC---------------------CCCCeEEEEEhhhHH------
Confidence 68899988777766655433 3467777777754331 1256999987 3211
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
.+.. .-..++|.++.++|||||+++-+--
T Consensus 129 --------h~~~-------~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 --------HLSY-------ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred --------hCCH-------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 0110 1246789999999999999987643
No 125
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=85.70 E-value=1.3 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.8
Q ss_pred HHHHHHHhhcccCCEEEEeecCCC
Q 007036 104 QIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 104 ~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
.+|+.+++|+||||.|+.||=--+
T Consensus 142 ~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 142 SFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred HHHHHHHHHcCCCcEEEEeccccC
Confidence 489999999999999999996533
No 126
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.51 E-value=4.7 Score=42.25 Aligned_cols=77 Identities=18% Similarity=0.040 Sum_probs=54.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|++..-+..++++++..+. ++.+...|....+. ...||.|++=..+.-
T Consensus 145 V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~----------------------~~~fD~I~~~~vl~~----- 196 (287)
T PRK12335 145 VTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI----------------------QEEYDFILSTVVLMF----- 196 (287)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc----------------------cCCccEEEEcchhhh-----
Confidence 78999999999999999888887 77777776644220 256999986432210
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
.+ ......+|.+..++|+|||+++.
T Consensus 197 --------l~-------~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 197 --------LN-------RERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred --------CC-------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 01335788899999999999665
No 127
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=85.30 E-value=1.7 Score=47.79 Aligned_cols=77 Identities=21% Similarity=0.201 Sum_probs=53.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc--EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN--LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n--v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++||+|+.-+++++.|++.-++.. +.+++.||..+-. .....||.|=+|+= |
T Consensus 77 v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~--------------------~~~~~fD~IDlDPf----G- 131 (377)
T PF02005_consen 77 VTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY--------------------SRQERFDVIDLDPF----G- 131 (377)
T ss_dssp EEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC--------------------HSTT-EEEEEE--S----S-
T ss_pred EEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh--------------------hccccCCEEEeCCC----C-
Confidence 7999999999999999999988876 8899999966311 12367999999864 1
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
+| .-.|..|++.++.| -|+|-|||
T Consensus 132 -----------Sp----------~pfldsA~~~v~~g-Gll~vTaT 155 (377)
T PF02005_consen 132 -----------SP----------APFLDSALQAVKDG-GLLCVTAT 155 (377)
T ss_dssp -----------------------HHHHHHHHHHEEEE-EEEEEEE-
T ss_pred -----------Cc----------cHhHHHHHHHhhcC-CEEEEecc
Confidence 12 34678899999996 56677887
No 128
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=85.17 E-value=1.7 Score=47.15 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=32.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHF 37 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~ 37 (620)
|+|.|++..=+..+.+|++..++.|+.+.+.|+..+
T Consensus 222 v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 222 VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 799999999999999999999999999999988664
No 129
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.93 E-value=8.8 Score=37.47 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=53.4
Q ss_pred cCCccEEEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHh
Q 007036 62 QLLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 141 (620)
Q Consensus 62 ~~~FDrILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~ 141 (620)
...||||+--=|+.|.|. +....++.....|=...+..|.++|+++|.|.-+-|.-.|-..=.++ .+-++
T Consensus 73 ~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~-~lA~~ 142 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE-ELAAE 142 (166)
T ss_pred CCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH-HHHHh
Confidence 477999999999999442 22233444445555778889999999999999999999986333343 33333
Q ss_pred CCCceEEeeC
Q 007036 142 CEGSVELVDV 151 (620)
Q Consensus 142 ~~~~~eLvd~ 151 (620)
.+ +.|+..
T Consensus 143 ~g--l~l~~~ 150 (166)
T PF10354_consen 143 AG--LVLVRK 150 (166)
T ss_pred cC--CEEEEE
Confidence 32 444443
No 130
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.29 E-value=2.6 Score=41.87 Aligned_cols=92 Identities=22% Similarity=0.201 Sum_probs=61.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+-.|...||+..|.+-+..||.+|+.|.+.++.. +. ....||.|.+=|=++
T Consensus 75 ~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~---------------------~~~~fd~v~aRAv~~------ 126 (184)
T PF02527_consen 75 VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PE---------------------YRESFDVVTARAVAP------ 126 (184)
T ss_dssp EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TT---------------------TTT-EEEEEEESSSS------
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cc---------------------cCCCccEEEeehhcC------
Confidence 57789999999999999999999999999988866 11 126789987654321
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
+ -.++.-+..++++||+++.--=.-..+|=++ ....+...
T Consensus 127 -------------------l-~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~-~~~~~~~~ 166 (184)
T PF02527_consen 127 -------------------L-DKLLELARPLLKPGGRLLAYKGPDAEEELEE-AKKAWKKL 166 (184)
T ss_dssp -------------------H-HHHHHHHGGGEEEEEEEEEEESS--HHHHHT-HHHHHHCC
T ss_pred -------------------H-HHHHHHHHHhcCCCCEEEEEcCCChHHHHHH-HHhHHHHh
Confidence 1 2466778889999998877655444433333 34444444
No 131
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=84.20 E-value=3.8 Score=46.71 Aligned_cols=133 Identities=11% Similarity=0.041 Sum_probs=72.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+|+.-+.++..++..++...+.|.+.|......... ......||.|+.-||=...-..+
T Consensus 66 i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~----------------~~~~~~fD~IIgNPPy~~~k~~~ 129 (524)
T TIGR02987 66 IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI----------------ESYLDLFDIVITNPPYGRLKPDK 129 (524)
T ss_pred eeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc----------------ccccCcccEEEeCCCccccCcch
Confidence 68999999999999999888773344556555543221100 00125799999999977654322
Q ss_pred cC------------ccccc---ccCc-----ch----hhhhHHHHHHH-HHHHHhhcccCCEEEEeecC--CChhccHHH
Q 007036 82 KA------------PDIWR---KWNV-----GL----GNGLHSLQVQI-AMRGISLLKVGGRIVYSTCS--MNPVENEAV 134 (620)
Q Consensus 82 K~------------pdiw~---~w~~-----~~----~~~L~~lQ~~I-L~rAl~lLk~GG~LVYSTCS--lnP~ENEaV 134 (620)
+. ++.+. .|.. .. ..+...+-..+ +.+|+++|++||++.+-+=+ ++-.-....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~l 209 (524)
T TIGR02987 130 KELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENL 209 (524)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHH
Confidence 11 11100 0000 00 01222233334 46899999999999885533 333333333
Q ss_pred HHHHHHhCCCceEEeeC
Q 007036 135 VAEILRKCEGSVELVDV 151 (620)
Q Consensus 135 V~~~L~~~~~~~eLvd~ 151 (620)
=+.+++... -..++++
T Consensus 210 R~~ll~~~~-i~~I~~f 225 (524)
T TIGR02987 210 REYIFNNRL-INCIQYF 225 (524)
T ss_pred HHHHHhCCe-eEEEEEC
Confidence 344444432 2345555
No 132
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=84.17 E-value=5.3 Score=40.39 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|.++.-+...+.+++..+. .++.+...|+..++. ..||.|++-- ++
T Consensus 82 v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------------------~~~d~v~~~~------~l 132 (239)
T TIGR00740 82 IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-----------------------KNASMVILNF------TL 132 (239)
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----------------------CCCCEEeeec------ch
Confidence 78999999988888888877664 467888888876541 2367666321 11
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
. -+.+ .-...+|.+..+.|||||+++.+.
T Consensus 133 ~-------~~~~-------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 133 Q-------FLPP-------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred h-------hCCH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 0 1111 113578999999999999998875
No 133
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=84.04 E-value=2.9 Score=41.14 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=49.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
+++.|+++..+......+ . +++.+...|...+|. ....||.|++...+.
T Consensus 61 ~~~~D~~~~~~~~~~~~~---~-~~~~~~~~d~~~~~~---------------------~~~~fD~vi~~~~l~------ 109 (240)
T TIGR02072 61 FIALDISAGMLAQAKTKL---S-ENVQFICGDAEKLPL---------------------EDSSFDLIVSNLALQ------ 109 (240)
T ss_pred EEEEeChHHHHHHHHHhc---C-CCCeEEecchhhCCC---------------------CCCceeEEEEhhhhh------
Confidence 578898887766555433 2 466667777765541 125699999764322
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
|.. +. .++|.+..++|++||.++.++
T Consensus 110 --------~~~-~~-------~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 110 --------WCD-DL-------SQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --------hcc-CH-------HHHHHHHHHHcCCCcEEEEEe
Confidence 111 11 358899999999999999874
No 134
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=83.83 E-value=4.8 Score=41.02 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=48.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+++|++...+.....+ .+++.+...|+..++. ...||.|++....
T Consensus 58 v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~----------------------~~~fD~v~~~~~l------- 103 (258)
T PRK01683 58 ITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQP----------------------PQALDLIFANASL------- 103 (258)
T ss_pred EEEEECCHHHHHHHHHh-----CCCCeEEECchhccCC----------------------CCCccEEEEccCh-------
Confidence 78999998766655433 2466666777654321 1469999986421
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.|-+. +.++|.+..+.|||||+++-++
T Consensus 104 -------~~~~d--------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 104 -------QWLPD--------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -------hhCCC--------HHHHHHHHHHhcCCCcEEEEEC
Confidence 12111 2568999999999999988753
No 135
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=83.72 E-value=5.5 Score=42.02 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=65.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC---CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT---ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDG 78 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~---~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdG 78 (620)
|+..|+++.-+..=+...++.+. +++.....||..+| + + ...||+.-. -+
T Consensus 133 V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-F--d------------------d~s~D~yTi------af 185 (296)
T KOG1540|consen 133 VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-F--D------------------DDSFDAYTI------AF 185 (296)
T ss_pred EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-C--C------------------CCcceeEEE------ec
Confidence 67789998777766666655453 35888999999887 2 1 134555422 12
Q ss_pred ccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 79 TLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 79 tlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
-+|.-+++ .+-|+.|.+.|||||++. |=..+.+|.+.+.+|-...
T Consensus 186 GIRN~th~----------------~k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 186 GIRNVTHI----------------QKALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred ceecCCCH----------------HHHHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhh
Confidence 23322222 356889999999999876 8888888877889998775
No 136
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=83.67 E-value=2.6 Score=44.30 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=62.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhC--CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC--TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg--~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
+++.|++..-+.+..-++.-.| ..+..+...|.-.-+.. .....||.||..+|=+..+.
T Consensus 80 i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~-------------------~~~~~~D~ii~NPPf~~~~~ 140 (311)
T PF02384_consen 80 IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF-------------------IKNQKFDVIIGNPPFGSKEW 140 (311)
T ss_dssp EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC-------------------TST--EEEEEEE--CTCES-
T ss_pred eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc-------------------ccccccccccCCCCcccccc
Confidence 6789999888777665554333 33344666665332210 01367999999999988743
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC--CChh-ccHHHHHHHHHhC
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPV-ENEAVVAEILRKC 142 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS--lnP~-ENEaVV~~~L~~~ 142 (620)
......--.+|... ...-...+...+.+++++||+||++++.+=+ |... ....+=+++|+++
T Consensus 141 ~~~~~~~~~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 141 KDEELEKDERFKKY-FPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp STGGGCTTCCCTTC-SSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccccccccccccc-CCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 11110000123221 1122233445889999999999998776543 3332 2334445666553
No 137
>PLN02672 methionine S-methyltransferase
Probab=83.56 E-value=4.6 Score=50.12 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=75.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC----------------CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT----------------ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLF 65 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~----------------~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~F 65 (620)
|+|.|+++.=+.+..+|+++.+. .++.+.+.|...... .....|
T Consensus 145 v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~--------------------~~~~~f 204 (1082)
T PLN02672 145 VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR--------------------DNNIEL 204 (1082)
T ss_pred EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc--------------------ccCCce
Confidence 79999999999999999998542 357777776643210 001369
Q ss_pred cEEEEcCCCcccccccc-CcccccccCcc-------hhhhhH---------HHHHHHHHHHHhhcccCCEEEEeecCCCh
Q 007036 66 DRVLCDVPCSGDGTLRK-APDIWRKWNVG-------LGNGLH---------SLQVQIAMRGISLLKVGGRIVYSTCSMNP 128 (620)
Q Consensus 66 DrILlDvPCSGdGtlrK-~pdiw~~w~~~-------~~~~L~---------~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP 128 (620)
|.|+.-+|==-.+-+.. .+++ +.+.|. .-..|. .+=++|+..|..+|++||.|+ |-+..
T Consensus 205 DlIVSNPPYI~~~e~~~l~~eV-~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~---lEiG~ 280 (1082)
T PLN02672 205 DRIVGCIPQILNPNPEAMSKLV-TENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI---FNMGG 280 (1082)
T ss_pred EEEEECCCcCCCcchhhcChhh-hhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE---EEECc
Confidence 99999999433332221 1222 111111 111111 122789999999999999887 56667
Q ss_pred hccHHHHHHHHHhCC
Q 007036 129 VENEAVVAEILRKCE 143 (620)
Q Consensus 129 ~ENEaVV~~~L~~~~ 143 (620)
...++|.+.++++.+
T Consensus 281 ~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 281 RPGQAVCERLFERRG 295 (1082)
T ss_pred cHHHHHHHHHHHHCC
Confidence 777788766777654
No 138
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=83.35 E-value=10 Score=40.74 Aligned_cols=99 Identities=26% Similarity=0.274 Sum_probs=68.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.=+..=++|+.+-++... + + +..|.... ......||.|.+-
T Consensus 188 v~g~DiDp~AV~aa~eNa~~N~v~~~-~--~-~~~~~~~~-----------------~~~~~~~DvIVAN---------- 236 (300)
T COG2264 188 VVGVDIDPQAVEAARENARLNGVELL-V--Q-AKGFLLLE-----------------VPENGPFDVIVAN---------- 236 (300)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCchh-h--h-cccccchh-----------------hcccCcccEEEeh----------
Confidence 79999999999999999998887651 1 1 11111100 0112579999862
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
+ |+..=.+++..+..+|||||+++.|= +.... +..|.+++.+.+ ++++++
T Consensus 237 -------------I--LA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~~~g--f~v~~~ 286 (300)
T COG2264 237 -------------I--LAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYEQAG--FEVVEV 286 (300)
T ss_pred -------------h--hHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHHhCC--CeEeEE
Confidence 2 55556688899999999999999998 66655 555566665543 666665
No 139
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=83.17 E-value=5.8 Score=39.35 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=53.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.|+++.=+.....++++.|.. ++.+...|....|. ...||.|++- +++
T Consensus 26 v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~----------------------~~~fD~I~~~------~~l 77 (224)
T smart00828 26 LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF----------------------PDTYDLVFGF------EVI 77 (224)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC----------------------CCCCCEeehH------HHH
Confidence 678899888888888888877753 56777777644321 1469999831 111
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
..-+ -...+|.++.++|||||+++.++-
T Consensus 78 ~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIK----------------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCC----------------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 1100 125788899999999999997754
No 140
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=82.94 E-value=3.4 Score=42.68 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=63.8
Q ss_pred EEEEcCChhHHHHHHHHHHHh----CCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccC-CccEEEEcCCCcc
Q 007036 2 VIANDLDVQRCNLLIHQTKRM----CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQL-LFDRVLCDVPCSG 76 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRl----g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~-~FDrILlDvPCSG 76 (620)
|.+.|+|+.=+.+.+.-+... .-+++.+...||..|-. . ... +||.|++|++= .
T Consensus 103 i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----~----------------~~~~~yDvIi~D~~d-p 161 (246)
T PF01564_consen 103 ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----E----------------TQEEKYDVIIVDLTD-P 161 (246)
T ss_dssp EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----T----------------SSST-EEEEEEESSS-T
T ss_pred EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----h----------------ccCCcccEEEEeCCC-C
Confidence 678899998888777766553 34689999999977631 0 113 79999999872 1
Q ss_pred ccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHh
Q 007036 77 DGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRK 141 (620)
Q Consensus 77 dGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~ 141 (620)
+| +.. . -.-.+.+..+.+.|++||.++.-.-| |..++..+..+++.
T Consensus 162 ~~-------------~~~--~--l~t~ef~~~~~~~L~~~Gv~v~~~~~--~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 162 DG-------------PAP--N--LFTREFYQLCKRRLKPDGVLVLQAGS--PFLHPELFKSILKT 207 (246)
T ss_dssp TS-------------CGG--G--GSSHHHHHHHHHHEEEEEEEEEEEEE--TTTTHHHHHHHHHH
T ss_pred CC-------------Ccc--c--ccCHHHHHHHHhhcCCCcEEEEEccC--cccchHHHHHHHHH
Confidence 11 100 0 22356778888999999999876533 23345555555544
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=80.69 E-value=9.8 Score=40.05 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=54.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+++.|. +.-+.....++.+.|.. ++.+...|+...+ ...+|.|++ | +
T Consensus 176 ~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-----------------------~~~~D~v~~----~--~-- 223 (306)
T TIGR02716 176 STILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-----------------------YPEADAVLF----C--R-- 223 (306)
T ss_pred EEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-----------------------CCCCCEEEe----E--h--
Confidence 466775 56667777777777764 5777777764321 022577765 1 1
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhcc
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVEN 131 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~EN 131 (620)
+...|++... .+||.++.+.|+|||+++-....+...++
T Consensus 224 -----~lh~~~~~~~-------~~il~~~~~~L~pgG~l~i~d~~~~~~~~ 262 (306)
T TIGR02716 224 -----ILYSANEQLS-------TIMCKKAFDAMRSGGRLLILDMVIDDPEN 262 (306)
T ss_pred -----hhhcCChHHH-------HHHHHHHHHhcCCCCEEEEEEeccCCCCC
Confidence 1223444322 67899999999999999877655554444
No 142
>PRK06922 hypothetical protein; Provisional
Probab=79.78 E-value=6.1 Score=46.58 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|++..=+...+.+....+ .++.+...|+..+|.. .....||.|++-.+ +.
T Consensus 445 VtGIDIS~~MLe~Ararl~~~g-~~ie~I~gDa~dLp~~-------------------fedeSFDvVVsn~v------LH 498 (677)
T PRK06922 445 IYGIDISENVIDTLKKKKQNEG-RSWNVIKGDAINLSSS-------------------FEKESVDTIVYSSI------LH 498 (677)
T ss_pred EEEEECCHHHHHHHHHHhhhcC-CCeEEEEcchHhCccc-------------------cCCCCEEEEEEchH------HH
Confidence 7899999987777776665554 3566777787765521 11256999985321 00
Q ss_pred cCcccccccCcchhhh-hHHHHHHHHHHHHhhcccCCEEEEeecCCC
Q 007036 82 KAPDIWRKWNVGLGNG-LHSLQVQIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~-L~~lQ~~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
-|-.+-+..... -.....++|.++.+.|||||+++-+.=++.
T Consensus 499 ----~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 499 ----ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred ----hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 000000000000 123457889999999999999998743333
No 143
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=79.66 E-value=7.1 Score=40.91 Aligned_cols=97 Identities=31% Similarity=0.387 Sum_probs=69.8
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+|.|.+-+..--+-|...+++ -+||+-+-.||++.-..++ .-...|.|+.|++
T Consensus 183 ~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRm------------------lVgmVDvIFaDva------- 235 (317)
T KOG1596|consen 183 CVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRM------------------LVGMVDVIFADVA------- 235 (317)
T ss_pred eEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheee------------------eeeeEEEEeccCC-------
Confidence 578888877666677766654 4788888899987432211 1246899999998
Q ss_pred ccCcccccccCcchhhhhHHHHHHHH-HHHHhhcccCCEEEEe---ecCCChhccHHHHHHHHHhC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIA-MRGISLLKVGGRIVYS---TCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL-~rAl~lLk~GG~LVYS---TCSlnP~ENEaVV~~~L~~~ 142 (620)
.|| |.+|| .+|-.+||+||-.|-| .|+=....+|+|-+.=.++.
T Consensus 236 --qpd----------------q~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~kl 283 (317)
T KOG1596|consen 236 --QPD----------------QARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKL 283 (317)
T ss_pred --Cch----------------hhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHH
Confidence 232 44444 4888999999977654 79999999999988766553
No 144
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=78.81 E-value=4.8 Score=38.81 Aligned_cols=72 Identities=26% Similarity=0.290 Sum_probs=41.3
Q ss_pred CCccEEEEcC--CCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 63 LLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 63 ~~FDrILlDv--PCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
..||.|++|. +|+|+.. . +......+....|.-|+++|++||.+|--+-.-... +.++..+-.
T Consensus 90 ~~~dlv~~D~~~~~~g~~~------------~-d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~--~~~~~~l~~ 154 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRN------------I-DEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI--EELIYLLKR 154 (181)
T ss_dssp CSESEEEE-------SSHH------------S-SHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS--HHHHHHHHH
T ss_pred cCcceeccccccCCCCchh------------h-HHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH--HHHHHHHHh
Confidence 5899999999 6776521 1 122233566666677889999999888766553333 366665555
Q ss_pred hCCCceEEee
Q 007036 141 KCEGSVELVD 150 (620)
Q Consensus 141 ~~~~~~eLvd 150 (620)
.+. .+.++.
T Consensus 155 ~F~-~v~~~K 163 (181)
T PF01728_consen 155 CFS-KVKIVK 163 (181)
T ss_dssp HHH-HEEEEE
T ss_pred CCe-EEEEEE
Confidence 442 355543
No 145
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=78.66 E-value=7.6 Score=40.85 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=52.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++..++..-......++++.|.. .+.|...|...++ ..||+|+. -|++
T Consensus 88 v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------------------------~~fD~IvS------i~~~ 137 (273)
T PF02353_consen 88 VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------------------------GKFDRIVS------IEMF 137 (273)
T ss_dssp EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------------------------S-SEEEE------ESEG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------------------------CCCCEEEE------Eech
Confidence 678888999899999999999986 4778777775543 36999873 1222
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP 128 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP 128 (620)
-.- .+.+. ...+.++.++|||||+++--+++...
T Consensus 138 Ehv-------g~~~~-------~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 138 EHV-------GRKNY-------PAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp GGT-------CGGGH-------HHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred hhc-------ChhHH-------HHHHHHHHHhcCCCcEEEEEeccccc
Confidence 111 11111 45678899999999999866555543
No 146
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=78.09 E-value=8.3 Score=40.13 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=56.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCC-CCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHF-PGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGt 79 (620)
|++.|.++.+...-+.++++.|. .+|.+...||... +.+. . .......||.|++|+-
T Consensus 107 v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~--~-------------~~~~~~~fD~iFiDad------ 165 (247)
T PLN02589 107 ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI--E-------------DGKYHGTFDFIFVDAD------ 165 (247)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH--h-------------ccccCCcccEEEecCC------
Confidence 78999999999999999999995 5788888888553 2110 0 0001257999999963
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
+. .. ...+..++++|++||.||.
T Consensus 166 --------K~---~Y--------~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 166 --------KD---NY--------INYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred --------HH---Hh--------HHHHHHHHHhcCCCeEEEE
Confidence 11 00 3445667899999999986
No 147
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=77.81 E-value=5.2 Score=40.91 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=45.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++.-+...+. .++.+...|+..++. ...||.|++....
T Consensus 56 v~gvD~s~~~~~~a~~-------~~~~~~~~d~~~~~~----------------------~~~fD~v~~~~~l------- 99 (255)
T PRK14103 56 IEALDSSPEMVAAARE-------RGVDARTGDVRDWKP----------------------KPDTDVVVSNAAL------- 99 (255)
T ss_pred EEEEECCHHHHHHHHh-------cCCcEEEcChhhCCC----------------------CCCceEEEEehhh-------
Confidence 6899998765544322 245566677655421 1469999985432
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
.|-+. +.++|.++.+.|||||+++.+
T Consensus 100 -------~~~~d--------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 100 -------QWVPE--------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -------hhCCC--------HHHHHHHHHHhCCCCcEEEEE
Confidence 12221 256888999999999999875
No 148
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=77.70 E-value=10 Score=36.24 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=49.9
Q ss_pred EEcCChhHHHHHHHHHHHh---CCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 4 ANDLDVQRCNLLIHQTKRM---CTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 4 AnD~d~kR~~~L~~~~kRl---g~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+.|.+..=+..-+.+.+.. +..++.+...|+..+|- ....||.|++- .| +
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~---------------------~~~~fD~v~~~-----~~-l 54 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF---------------------DDCEFDAVTMG-----YG-L 54 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC---------------------CCCCeeEEEec-----ch-h
Confidence 5677766555444333321 13578888889888762 12569999852 22 1
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
+ .| + -..+.|....+.|||||+++-...+
T Consensus 55 ~-------~~-~--------d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 55 R-------NV-V--------DRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred h-------cC-C--------CHHHHHHHHHHHcCcCeEEEEEECC
Confidence 1 11 1 1257888999999999999876655
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=76.76 E-value=18 Score=38.66 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=73.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|.+..-+.+-.+|++|++.. .+.|.|++-+.=-. .+......++|.|++.+|-=-+--+
T Consensus 175 v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~----------------~~~~l~~~~~dllvsNPPYI~~dD~ 238 (328)
T KOG2904|consen 175 VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS----------------DEHPLLEGKIDLLVSNPPYIRKDDN 238 (328)
T ss_pred EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc----------------cccccccCceeEEecCCCcccccch
Confidence 799999999999999999999975 57788775433100 0111223678999999995332222
Q ss_pred c-cCcccccccCcchh----hhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 81 R-KAPDIWRKWNVGLG----NGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 81 r-K~pdiw~~w~~~~~----~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
+ -+|++ +.+.+..+ ..=-..=..++.=|-++|++||.++..+--. .+.-..|+..+.
T Consensus 239 ~~l~~eV-~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 239 RQLKPEV-RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVRIWMI 300 (328)
T ss_pred hhcCchh-eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccCcHHHHHHHH
Confidence 2 23444 22333221 1111222455666888999999999987633 334456666554
No 150
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=76.48 E-value=5.8 Score=40.15 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=48.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+++.=+..-++.+.. .++|.+...|-..+. ....||.|++ |.-+.
T Consensus 68 LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~----------------------P~~~FDLIV~----SEVlY-- 117 (201)
T PF05401_consen 68 LLAVDISPRALARARERLAG--LPHVEWIQADVPEFW----------------------PEGRFDLIVL----SEVLY-- 117 (201)
T ss_dssp EEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT-------------------------SS-EEEEEE----ES-GG--
T ss_pred eEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC----------------------CCCCeeEEEE----ehHhH--
Confidence 68999998877776655553 478888877664431 1378999986 22221
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
-+++ ..-..+.+.+....|+|||.||..|
T Consensus 118 -------YL~~------~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 -------YLDD------AEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp -------GSSS------HHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------cCCC------HHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 1221 0122567788899999999999854
No 151
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=76.22 E-value=3 Score=41.35 Aligned_cols=56 Identities=11% Similarity=0.015 Sum_probs=42.3
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 74 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPC 74 (620)
|+++|.+..=+..+.+|++.++.. ++.+.+.|+..+-.. . ......||.|++|+|=
T Consensus 75 v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~-~----------------~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 75 AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKF-L----------------AKKPTFDNVIYLDPPF 131 (189)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHH-h----------------hccCCCceEEEECcCC
Confidence 789999999999999999999986 688899988443110 0 0011348999999994
No 152
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=75.85 E-value=8.5 Score=41.92 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=46.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|.+..-+.....+ ....++.+...|+..+|. ....||.|++- +++.
T Consensus 140 VtgVD~S~~mL~~A~~k---~~~~~i~~i~gD~e~lp~---------------------~~~sFDvVIs~------~~L~ 189 (340)
T PLN02490 140 VTILDQSPHQLAKAKQK---EPLKECKIIEGDAEDLPF---------------------PTDYADRYVSA------GSIE 189 (340)
T ss_pred EEEEECCHHHHHHHHHh---hhccCCeEEeccHHhCCC---------------------CCCceeEEEEc------Chhh
Confidence 67888887655554443 234566677777765441 12569999872 2222
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
. |.. ..++|.++.++||+||+++.+
T Consensus 190 ~-------~~d---------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 190 Y-------WPD---------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred h-------CCC---------HHHHHHHHHHhcCCCcEEEEE
Confidence 1 111 124799999999999999864
No 153
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=75.54 E-value=4.7 Score=42.23 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=32.0
Q ss_pred ccCCccEEEEcCCCccccccccCccccc--ccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 61 GQLLFDRVLCDVPCSGDGTLRKAPDIWR--KWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 61 ~~~~FDrILlDvPCSGdGtlrK~pdiw~--~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
....||.|||=. ...|- .|....+ ++.+.+...||.|||+||-=
T Consensus 163 ~~~~fDiIlcLS-----------iTkWIHLNwgD~GL-------~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 163 IQPEFDIILCLS-----------ITKWIHLNWGDDGL-------RRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccEEEEEE-----------eeeeEecccccHHH-------HHHHHHHHHhhCcCcEEEEc
Confidence 346799999841 11233 4665555 78899999999999999963
No 154
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=74.54 E-value=10 Score=37.04 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=40.4
Q ss_pred CCccEEEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 63 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 63 ~~FDrILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
..||+|++|+|= -+. ..+.+....+-.|+|+++.|+.+| +.+||..|.++|
T Consensus 85 ~~~d~vv~DPPF-------l~~---------------ec~~k~a~ti~~L~k~~~kii~~T----g~~~~~~~~~ll--- 135 (162)
T PF10237_consen 85 GKFDVVVIDPPF-------LSE---------------ECLTKTAETIRLLLKPGGKIILCT----GEEMEELIKKLL--- 135 (162)
T ss_pred CCceEEEECCCC-------CCH---------------HHHHHHHHHHHHHhCccceEEEec----HHHHHHHHHHHh---
Confidence 689999999994 112 223333333444567789999876 789999999999
Q ss_pred CCceEEeeCC
Q 007036 143 EGSVELVDVS 152 (620)
Q Consensus 143 ~~~~eLvd~~ 152 (620)
.++..+..
T Consensus 136 --~~~~~~f~ 143 (162)
T PF10237_consen 136 --GLRMCDFQ 143 (162)
T ss_pred --CeeEEeEE
Confidence 25555543
No 155
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.24 E-value=6.4 Score=40.74 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=54.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|+|..=.+.=....++.|... |.+...+|.. .+ +... .+.....||-+++|+
T Consensus 101 v~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e--sL--d~l~-----------~~~~~~tfDfaFvDa-------- 157 (237)
T KOG1663|consen 101 VVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE--SL--DELL-----------ADGESGTFDFAFVDA-------- 157 (237)
T ss_pred EEEEecChHHHHHhHHHHHhccccceeeeeecchhh--hH--HHHH-----------hcCCCCceeEEEEcc--------
Confidence 7899999888777777778888753 4455555533 11 1100 112347899999995
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
|+. ... ....|+++|+|+||.|+|
T Consensus 158 ------dK~---nY~--------~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 158 ------DKD---NYS--------NYYERLLRLLRVGGVIVV 181 (237)
T ss_pred ------chH---HHH--------HHHHHHHhhcccccEEEE
Confidence 222 111 667899999999999999
No 156
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=73.62 E-value=7.5 Score=44.42 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=63.8
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
.+|+.|+...++..+...+++.|..|+.+++.|+..+... + ....+|+|.+=
T Consensus 373 ~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~-~------------------~~~sv~~i~i~--------- 424 (506)
T PRK01544 373 LFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILND-L------------------PNNSLDGIYIL--------- 424 (506)
T ss_pred CEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHh-c------------------CcccccEEEEE---------
Confidence 3789999999999999999999999999998887543321 1 11346666653
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
-||=|.+-.. . .---+|...|..-..+||+||.|-..|=.
T Consensus 425 --FPDPWpKkrh-~--krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 425 --FPDPWIKNKQ-K--KKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred --CCCCCCCCCC-c--cccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 4555544111 1 11124566778888999999999988854
No 157
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=73.57 E-value=2.6 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcccCCEE
Q 007036 103 VQIAMRGISLLKVGGRI 119 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~L 119 (620)
..+|.+..++|||||+|
T Consensus 83 ~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 83 EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp HHHHHHHTTT-TSS-EE
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 48899999999999986
No 158
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=72.76 E-value=14 Score=40.80 Aligned_cols=79 Identities=14% Similarity=0.145 Sum_probs=49.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++.|+++..+....+++..+ ++.+...|...+ ...||.|++= +++.
T Consensus 193 V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l------------------------~~~fD~Ivs~------~~~e 239 (383)
T PRK11705 193 VVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL------------------------NGQFDRIVSV------GMFE 239 (383)
T ss_pred EEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc------------------------CCCCCEEEEe------Cchh
Confidence 789999998888887776432 355555554332 1469999751 1111
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
.- .. .--..++..+.++|||||+++.++.+..
T Consensus 240 hv-------g~-------~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 240 HV-------GP-------KNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hC-------Ch-------HHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 10 00 1113578889999999999998765433
No 159
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=71.76 E-value=18 Score=35.89 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=26.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQH 36 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~ 36 (620)
|++.|+++.-+...+.++...+. .++.....|+..
T Consensus 80 v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 80 VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 78999999999998888876665 366666666544
No 160
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=70.98 E-value=17 Score=36.74 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.2
Q ss_pred HHHHHHHHhhcccCCEEEEeecCCC
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
.+.+.+..++|||||++++.|=+..
T Consensus 132 ~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 132 QRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred HHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 4578888999999999888776653
No 161
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=70.93 E-value=42 Score=32.21 Aligned_cols=107 Identities=16% Similarity=0.097 Sum_probs=61.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|+|+...=+..=+..++..+.. ++.+.+..=..+... + ....+|.|+.- .|-+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~-i------------------~~~~v~~~iFN-----LGYL 57 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEY-I------------------PEGPVDAAIFN-----LGYL 57 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT---------------------S--EEEEEEE-----ESB-
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhh-C------------------ccCCcCEEEEE-----CCcC
Confidence 799999999999999999988875 476665443343221 0 00245555442 3333
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh---hccHHHHHHHHHh
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP---VENEAVVAEILRK 141 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP---~ENEaVV~~~L~~ 141 (620)
-. ....+......=+.-|..|+++|++||+|+-..-.=+| +|-++|.+++ +.
T Consensus 58 Pg--------gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~-~~ 112 (140)
T PF06962_consen 58 PG--------GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFL-AS 112 (140)
T ss_dssp CT--------S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHH-HT
T ss_pred CC--------CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHH-Hh
Confidence 22 11223344455567788999999999998876666566 6777765554 44
No 162
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.16 E-value=11 Score=40.43 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCcccCCCccc-cccccCCccccchhh
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRK-WKVRDKGIWLASHKH 181 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~~~pGl~~-W~v~~~~~~~~~~~~ 181 (620)
.+.|..|..+|+|||||+-- |++..|+ .+|..+.++... ..++..||-. .+|-.. .+...+.....|.++
T Consensus 224 ~~~L~~a~~~L~~gGRl~VI--sFHSLED-RiVK~ff~~~s~----~~~p~~lP~~--~~~~~~~~~~itkK~i~ps~~E 294 (314)
T COG0275 224 EEALEAALDLLKPGGRLAVI--SFHSLED-RIVKNFFKELSK----PGVPKGLPVT--EEGPALKFKLITKKPIMPSEEE 294 (314)
T ss_pred HHHHHHHHHhhCCCcEEEEE--EecchHH-HHHHHHHHHhcc----cCCCCCCCcc--cccccchhhhccCCCcCCCHHH
Confidence 35688899999999998653 3444443 688999987642 5566677742 233122 244444455677888
Q ss_pred HHhhhc
Q 007036 182 VRKFRR 187 (620)
Q Consensus 182 v~~~~~ 187 (620)
+..+-|
T Consensus 295 i~~NpR 300 (314)
T COG0275 295 IEANPR 300 (314)
T ss_pred HHhCcc
Confidence 776654
No 163
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=69.06 E-value=19 Score=37.22 Aligned_cols=97 Identities=28% Similarity=0.349 Sum_probs=64.0
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+|.|.+.++.=.+-|.+..++ -+||+-+-.||....... ..-..+|.|.+|+.
T Consensus 100 ~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P~~Y~------------------~lv~~VDvI~~DVa------- 152 (229)
T PF01269_consen 100 VVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHPEKYR------------------MLVEMVDVIFQDVA------- 152 (229)
T ss_dssp EEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSGGGGT------------------TTS--EEEEEEE-S-------
T ss_pred cEEEEEecchhHHHHHHHhcc--CCceeeeeccCCChHHhh------------------cccccccEEEecCC-------
Confidence 478999999888888877776 479998889998632110 11257999999986
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHH-HHHhhcccCCEEEEee---cCCChhccHHHHHHHHHhC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAM-RGISLLKVGGRIVYST---CSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~-rAl~lLk~GG~LVYST---CSlnP~ENEaVV~~~L~~~ 142 (620)
.| -|.+|+. +|-.+||+||.++-+- |-=.....++|.+.-+++.
T Consensus 153 --Qp----------------~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L 200 (229)
T PF01269_consen 153 --QP----------------DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKL 200 (229)
T ss_dssp --ST----------------THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHH
T ss_pred --Ch----------------HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHH
Confidence 11 3666665 5557999999887664 3224456677777666553
No 164
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=68.96 E-value=17 Score=37.93 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcccCCEEEEee
Q 007036 100 SLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 100 ~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
..|.++|.+..+.|+|||.|+-..
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEC
Confidence 457899999999999999999764
No 165
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=67.85 E-value=11 Score=36.14 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=38.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVP 73 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvP 73 (620)
|+|.|+|+.-+..+.+++.. ..++.+.+.|+..++. ....||.|+.+.|
T Consensus 38 v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~---------------------~~~~~d~vi~n~P 86 (169)
T smart00650 38 VTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL---------------------PKLQPYKVVGNLP 86 (169)
T ss_pred EEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc---------------------cccCCCEEEECCC
Confidence 78999999988888877754 4689999999987642 0135899999887
No 166
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=67.23 E-value=30 Score=37.18 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=66.1
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|.-.|+|..=+..=+.|++.-+..+..|...|. |-. ...+||.|++-+|=-
T Consensus 185 vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~--~~~---------------------v~~kfd~IisNPPfh------ 235 (300)
T COG2813 185 LTLVDVNARAVESARKNLAANGVENTEVWASNL--YEP---------------------VEGKFDLIISNPPFH------ 235 (300)
T ss_pred EEEEecCHHHHHHHHHhHHHcCCCccEEEEecc--ccc---------------------ccccccEEEeCCCcc------
Confidence 456788988888888888887777743322211 100 114899999999932
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEee
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVD 150 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd 150 (620)
. ...-.+.+=.+|+..|...|++||.|--..=..-|. ...|++.=+.++.+.
T Consensus 236 ~-----------G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y------~~~L~~~Fg~v~~la 287 (300)
T COG2813 236 A-----------GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPY------EKKLKELFGNVEVLA 287 (300)
T ss_pred C-----------CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCCh------HHHHHHhcCCEEEEE
Confidence 1 112334455689999999999999877666566663 344544334555543
No 167
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=65.88 E-value=22 Score=37.99 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=57.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|++.+.+..-+...+..++..|+. ++.|.-.|=..+. ..||||.- -|++
T Consensus 98 V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------------------------e~fDrIvS------vgmf 147 (283)
T COG2230 98 VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------------------------EPFDRIVS------VGMF 147 (283)
T ss_pred EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------------------------cccceeee------hhhH
Confidence 789999999999999999999998 8888877665543 34999962 2322
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
- .....+. ...+.++..+|++||+++-=|=+
T Consensus 148 E-------hvg~~~~-------~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 148 E-------HVGKENY-------DDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred H-------HhCcccH-------HHHHHHHHhhcCCCceEEEEEec
Confidence 2 1111111 45788899999999998864433
No 168
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=65.07 E-value=14 Score=34.45 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=40.0
Q ss_pred CCccEEEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhC
Q 007036 63 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKC 142 (620)
Q Consensus 63 ~~FDrILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~ 142 (620)
..||.|.+|+- | -++||++|.. .++.+..+++++||+++=-||+ ..|...|...
T Consensus 49 ~~~Da~ylDgF-s----P~~nPelWs~--------------e~~~~l~~~~~~~~~l~Tys~a-------~~Vr~~L~~a 102 (124)
T PF05430_consen 49 ARFDAWYLDGF-S----PAKNPELWSE--------------ELFKKLARLSKPGGTLATYSSA-------GAVRRALQQA 102 (124)
T ss_dssp T-EEEEEE-SS------TTTSGGGSSH--------------HHHHHHHHHEEEEEEEEES--B-------HHHHHHHHHC
T ss_pred ccCCEEEecCC-C----CcCCcccCCH--------------HHHHHHHHHhCCCcEEEEeech-------HHHHHHHHHc
Confidence 67999999953 1 2589998743 5788889999999987755554 5689999998
Q ss_pred C
Q 007036 143 E 143 (620)
Q Consensus 143 ~ 143 (620)
+
T Consensus 103 G 103 (124)
T PF05430_consen 103 G 103 (124)
T ss_dssp T
T ss_pred C
Confidence 7
No 169
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=64.98 E-value=29 Score=34.88 Aligned_cols=78 Identities=17% Similarity=0.122 Sum_probs=50.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|.|.|.+..=+..|.+.+++-+.+ |.+...|-..+. . ...||.|++.+- +.
T Consensus 55 VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~---------------------~-~~~yD~I~st~v------~~ 105 (192)
T PF03848_consen 55 VTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFD---------------------F-PEEYDFIVSTVV------FM 105 (192)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-----------------------TTTEEEEEEESS------GG
T ss_pred EEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcc---------------------c-cCCcCEEEEEEE------ec
Confidence 789999999999999888888876 766766654332 0 156899986422 11
Q ss_pred c-CcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 82 K-APDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 82 K-~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
- +++. --+|+.+--+.++|||+.+|-|
T Consensus 106 fL~~~~---------------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 106 FLQREL---------------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GS-GGG---------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCHHH---------------HHHHHHHHHhhcCCcEEEEEEE
Confidence 0 1111 1345666667899999999944
No 170
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=64.05 E-value=22 Score=38.04 Aligned_cols=95 Identities=22% Similarity=0.287 Sum_probs=62.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|+|.|+|+.=...-++|++.-|+..- +..+....+ ...+||.|++.
T Consensus 187 v~a~DiDp~Av~~a~~N~~~N~~~~~-~~v~~~~~~-----------------------~~~~~dlvvAN---------- 232 (295)
T PF06325_consen 187 VVAIDIDPLAVEAARENAELNGVEDR-IEVSLSEDL-----------------------VEGKFDLVVAN---------- 232 (295)
T ss_dssp EEEEESSCHHHHHHHHHHHHTT-TTC-EEESCTSCT-----------------------CCS-EEEEEEE----------
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCee-EEEEEeccc-----------------------ccccCCEEEEC----------
Confidence 79999999999999999998887652 221211111 11679999863
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDV 151 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~ 151 (620)
| +...-..++.....+|++||++|-|= +..++.+.|++++ ++ + ++++..
T Consensus 233 ----I-----------~~~vL~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~a~-~~-g--~~~~~~ 281 (295)
T PF06325_consen 233 ----I-----------LADVLLELAPDIASLLKPGGYLILSG--ILEEQEDEVIEAY-KQ-G--FELVEE 281 (295)
T ss_dssp ----S------------HHHHHHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHHHH-HT-T--EEEEEE
T ss_pred ----C-----------CHHHHHHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHHHH-HC-C--CEEEEE
Confidence 1 23334667777888999999999864 5556666776655 54 3 566554
No 171
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=63.14 E-value=32 Score=38.51 Aligned_cols=80 Identities=18% Similarity=0.069 Sum_probs=49.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.|.+..-+..- .++.+ .+++.+.+.|+.... +. .....||.|++..++.
T Consensus 62 v~giD~s~~~l~~a---~~~~~~~~~i~~~~~d~~~~~-~~------------------~~~~~fD~I~~~~~l~----- 114 (475)
T PLN02336 62 VIALDFIESVIKKN---ESINGHYKNVKFMCADVTSPD-LN------------------ISDGSVDLIFSNWLLM----- 114 (475)
T ss_pred EEEEeCCHHHHHHH---HHHhccCCceEEEEecccccc-cC------------------CCCCCEEEEehhhhHH-----
Confidence 78999998765432 22222 467888888875321 00 1125699999854411
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEee
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYST 123 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYST 123 (620)
.++. ....++|.+..+.|||||+|+..-
T Consensus 115 --------~l~~-------~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 115 --------YLSD-------KEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred --------hCCH-------HHHHHHHHHHHHhcCCCeEEEEEe
Confidence 1111 112678899999999999998853
No 172
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=62.22 E-value=7.8 Score=34.78 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=51.9
Q ss_pred CccEEEEceEeeEEEecCCCCCCCccceeeccCchhhhhhcccCcEEecCHHHHHHHhhcCCCCcccCCChHHHHHHhcC
Q 007036 444 QQLKITSVGLKMFERQTSREGNSAPCSFRISSEGLPVILPYITKQILYASLVDFKHLLQYKTIKFADFVDAEFGEKASKL 523 (620)
Q Consensus 444 ~~lkii~~GvK~F~rq~~~~~~~~~C~~RI~qEGl~~l~p~i~kRiv~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l 523 (620)
.+|||+..|+++=+... =+|+.++.++..+.+.-.+++|.++.++.+..|..+.+..+. -
T Consensus 11 ~~l~v~r~Gl~lg~~~k--------~~f~Ps~~la~~~~~~~~~~~iel~~e~a~~yl~Ge~i~~~~------------~ 70 (102)
T PF13636_consen 11 PGLKVLRAGLYLGEIKK--------NRFEPSHALAMALGPEATKNVIELDDEQALRYLRGEDIELDP------------P 70 (102)
T ss_dssp TTSEECECSEEEEEEET--------TEEEEBHHHHHCB--GCCS-EEEETCHHHHHHHCT--EE-SS-------------
T ss_pred CCCeEEecCcEeeeEeC--------CcEEECHHHHHhhCccccceEEECCHHHHHHHHcCCcccCCC------------C
Confidence 57999999999987652 289999999999999988999999999999999876654432 1
Q ss_pred CCceEEEEEe
Q 007036 524 MMGCCVIVLS 533 (620)
Q Consensus 524 ~~Gc~vl~~~ 533 (620)
..|=++|.++
T Consensus 71 ~~G~vlv~~~ 80 (102)
T PF13636_consen 71 DKGWVLVTYE 80 (102)
T ss_dssp -EEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 3577777776
No 173
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=60.29 E-value=37 Score=34.45 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=57.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEE----EcCC-Cc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVL----CDVP-CS 75 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrIL----lDvP-CS 75 (620)
++..|-+.+-..+-++.++|-+.+| |..-..|-.. | .+...+||.|| +||- =|
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~-~--------------------~~~~~qfdlvlDKGT~DAisLs 152 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD-P--------------------DFLSGQFDLVLDKGTLDAISLS 152 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC-C--------------------cccccceeEEeecCceeeeecC
Confidence 4678888888888887788888887 5444444322 1 12236788887 4542 23
Q ss_pred cccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhc
Q 007036 76 GDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVE 130 (620)
Q Consensus 76 GdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~E 130 (620)
+|+.-.|. .--|...-++|+|||+.|-+.|-+...|
T Consensus 153 ~d~~~~r~-------------------~~Y~d~v~~ll~~~gifvItSCN~T~dE 188 (227)
T KOG1271|consen 153 PDGPVGRL-------------------VVYLDSVEKLLSPGGIFVITSCNFTKDE 188 (227)
T ss_pred CCCcccce-------------------eeehhhHhhccCCCcEEEEEecCccHHH
Confidence 34332221 1223455678999999999999988754
No 174
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=60.04 E-value=12 Score=40.27 Aligned_cols=78 Identities=23% Similarity=0.279 Sum_probs=41.1
Q ss_pred HHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCcccCCCccccccccCCccccchhhHH
Q 007036 104 QIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHVR 183 (620)
Q Consensus 104 ~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v~ 183 (620)
..|..|..+|+|||+|+- =|++..|+- +|..+++...... .++..+|-. ..+....|+...+.....|.+|+.
T Consensus 222 ~~L~~a~~~L~~gGrl~V--ISFHSLEDR-iVK~~f~~~~~~~---~~p~~lp~~-~~~~~~~~~~i~kk~i~ps~~Ei~ 294 (310)
T PF01795_consen 222 RGLEAAPDLLKPGGRLVV--ISFHSLEDR-IVKQFFRELAKSC---KCPPGLPVC-ECGKHPKFKLITKKPITPSEEEIE 294 (310)
T ss_dssp HHHHHHHHHEEEEEEEEE--EESSHHHHH-HHHHHHHCCSSC----------------------EESESS-B---HHHHH
T ss_pred HHHHHHHHHhcCCcEEEE--EEecchhhH-HHHHHHHHhcccC---CCccccccc-ccccccceEEccCCccCCChhhhh
Confidence 567788999999999985 468998875 5577777654321 233344432 122334477666666678888888
Q ss_pred hhhcc
Q 007036 184 KFRRI 188 (620)
Q Consensus 184 ~~~~~ 188 (620)
.+-|+
T Consensus 295 ~NpRs 299 (310)
T PF01795_consen 295 ENPRS 299 (310)
T ss_dssp H-GGG
T ss_pred cCCch
Confidence 77654
No 175
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=59.41 E-value=35 Score=35.27 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=54.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEE-EEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEc-CCCccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLI-VTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCD-VPCSGDGT 79 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~-vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlD-vPCSGdGt 79 (620)
|++.|.+++=-+.+...++.-.-.++. .+..++.++|.+. ..++|.|+|- +=||-.
T Consensus 102 vt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~--------------------d~s~DtVV~TlvLCSve-- 159 (252)
T KOG4300|consen 102 VTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA--------------------DGSYDTVVCTLVLCSVE-- 159 (252)
T ss_pred EEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc--------------------cCCeeeEEEEEEEeccC--
Confidence 677888877666666555544444555 5667888877531 2678988863 556643
Q ss_pred cccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEe
Q 007036 80 LRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYS 122 (620)
Q Consensus 80 lrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYS 122 (620)
-+.+.|.+--++|+|||++++-
T Consensus 160 ---------------------~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 160 ---------------------DPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred ---------------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 2478899999999999999974
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=59.13 E-value=19 Score=42.90 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=43.9
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 74 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPC 74 (620)
|+|.|+|+.-+..-++|+++.|... +.+.+.|+..++.. .....||.|++++|=
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~-------------------~~~~~~d~IvtNPPY 313 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNP-------------------LPKGPTGLVISNPPY 313 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccc-------------------cccCCCCEEEECCCC
Confidence 7899999999999999999999865 77888898876531 011469999999993
No 177
>PRK11524 putative methyltransferase; Provisional
Probab=57.20 E-value=19 Score=37.75 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=34.8
Q ss_pred CCccEEEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCC
Q 007036 63 LLFDRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 63 ~~FDrILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
..||.|++|+|=-. |.-. .+....|.. ......-..+|..+.++||+||.|+.. |+.
T Consensus 26 ~siDlIitDPPY~~-~~~~--~~~~~~~~~---~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~ 82 (284)
T PRK11524 26 ESVDLIFADPPYNI-GKNF--DGLIEAWKE---DLFIDWLYEWIDECHRVLKKQGTMYIM-NST 82 (284)
T ss_pred CcccEEEECCCccc-cccc--ccccccccH---HHHHHHHHHHHHHHHHHhCCCcEEEEE-cCc
Confidence 57999999999632 1100 011112321 122233468889999999999988764 554
No 178
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=56.61 E-value=92 Score=33.47 Aligned_cols=99 Identities=23% Similarity=0.351 Sum_probs=65.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCC-cEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTA-NLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~-nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+..|.+..|.+.-.+..++.|.+ |+.++..|-..-.. ......+|.|.+|.|
T Consensus 133 l~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF-------------------~~ks~~aDaVFLDlP------- 186 (314)
T KOG2915|consen 133 LYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF-------------------LIKSLKADAVFLDLP------- 186 (314)
T ss_pred eEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc-------------------cccccccceEEEcCC-------
Confidence 678899999999999999998875 78888777644211 011378999999998
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCCh-hccHHHHHHHHHhCCCceEEee
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNP-VENEAVVAEILRKCEGSVELVD 150 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP-~ENEaVV~~~L~~~~~~~eLvd 150 (620)
+| | .-+-+|++.||.+|. --||++| +|-=+=-.++|+.++ .++++-
T Consensus 187 --aP-----w-------------~AiPha~~~lk~~g~---r~csFSPCIEQvqrtce~l~~~g-f~~i~~ 233 (314)
T KOG2915|consen 187 --AP-----W-------------EAIPHAAKILKDEGG---RLCSFSPCIEQVQRTCEALRSLG-FIEIET 233 (314)
T ss_pred --Ch-----h-------------hhhhhhHHHhhhcCc---eEEeccHHHHHHHHHHHHHHhCC-CceEEE
Confidence 33 2 124567778888764 2478887 343334455666664 344433
No 179
>PRK10742 putative methyltransferase; Provisional
Probab=54.57 E-value=18 Score=37.98 Aligned_cols=52 Identities=13% Similarity=-0.139 Sum_probs=41.0
Q ss_pred EEEEcCChhHHHHHHHHHHHh------CC---CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcC
Q 007036 2 VIANDLDVQRCNLLIHQTKRM------CT---ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDV 72 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRl------g~---~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDv 72 (620)
|++.|.++.=+.+|.++++|+ +. .++.+.+.|+..|-.- ....||.|.+|+
T Consensus 113 V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~--------------------~~~~fDVVYlDP 172 (250)
T PRK10742 113 VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--------------------ITPRPQVVYLDP 172 (250)
T ss_pred EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--------------------CCCCCcEEEECC
Confidence 788999999999999999996 32 5788888888665320 113699999999
Q ss_pred C
Q 007036 73 P 73 (620)
Q Consensus 73 P 73 (620)
|
T Consensus 173 M 173 (250)
T PRK10742 173 M 173 (250)
T ss_pred C
Confidence 8
No 180
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=53.64 E-value=25 Score=37.41 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=42.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSG 76 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSG 76 (620)
|+|.|+|..=+..|.+++...+ ..++.+++.|+..++. ..||+|+++.|=..
T Consensus 61 V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-----------------------~~~d~VvaNlPY~I 113 (294)
T PTZ00338 61 VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-----------------------PYFDVCVANVPYQI 113 (294)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-----------------------cccCEEEecCCccc
Confidence 7999999999999999988776 5789999999976431 35799998888443
No 181
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=50.56 E-value=27 Score=36.22 Aligned_cols=32 Identities=13% Similarity=0.225 Sum_probs=20.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 38 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p 38 (620)
|++.|+++.=+.... ++. +++.+...|+..+|
T Consensus 115 v~giD~s~~~l~~A~---~~~--~~~~~~~~d~~~lp 146 (272)
T PRK11088 115 LFGLDISKVAIKYAA---KRY--PQVTFCVASSHRLP 146 (272)
T ss_pred EEEECCCHHHHHHHH---HhC--CCCeEEEeecccCC
Confidence 689999976444432 332 56666667777665
No 182
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=48.69 E-value=30 Score=36.84 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=51.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhC----CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMC----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
+++.|+|++=+.+-+.-+.-+. -+.+.|.-.|+..|-. .. ..+||.|++|.- |
T Consensus 103 i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~-------------------~~-~~~fDvIi~D~t---d 159 (282)
T COG0421 103 ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR-------------------DC-EEKFDVIIVDST---D 159 (282)
T ss_pred EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH-------------------hC-CCcCCEEEEcCC---C
Confidence 5677777765555544443332 2456666666655421 11 137999999953 3
Q ss_pred cccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 78 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 78 GtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
+. ...+. -.+..-.....+.|+++|.+|.=+=|
T Consensus 160 p~-gp~~~--------------Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 160 PV-GPAEA--------------LFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CC-Ccccc--------------cCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 31 11111 13456677788899999999986444
No 183
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=47.29 E-value=1.3e+02 Score=33.44 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=62.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
+++.|+|.+-+..-+.|+.+.|+.- |.....|++.++.- ...+|.|++++|=- ..
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~---------------------~~~~gvvI~NPPYG-eR-- 312 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP---------------------LEEYGVVISNPPYG-ER-- 312 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC---------------------CCcCCEEEeCCCcc-hh--
Confidence 5799999999999999999999864 66778888887531 15689999999932 11
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeec
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTC 124 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTC 124 (620)
-..-.....|=..+....-+.++-.++.|.||=
T Consensus 313 -----------lg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 313 -----------LGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred -----------cCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 011122333445666666677777788888774
No 184
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=46.31 E-value=37 Score=34.83 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=54.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCC-ccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLL-FDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~-FDrILlDvPCSGdGtl 80 (620)
|+=.|...||+.-|....+.||.+|+.+.+..+..|..- .. ||.|.+=|=+|-+
T Consensus 94 vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~----------------------~~~~D~vtsRAva~L~--- 148 (215)
T COG0357 94 VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE----------------------KKQYDVVTSRAVASLN--- 148 (215)
T ss_pred EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc----------------------cccCcEEEeehccchH---
Confidence 455799999999999999999999999999998876521 12 8998876654432
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEE
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIV 120 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LV 120 (620)
.++.=+..++|+||.++
T Consensus 149 -----------------------~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 149 -----------------------VLLELCLPLLKVGGGFL 165 (215)
T ss_pred -----------------------HHHHHHHHhcccCCcch
Confidence 23444678999988765
No 185
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=46.10 E-value=18 Score=37.84 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred CEEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 1 MVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 1 ~VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
.|+|+|+++.-+..+.+|... . +.+.|-..+... .. ...+|.|+.++||-|--..
T Consensus 24 ~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~~~~------------------~~-~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 24 IVAANEIDKSAAETYEANFPN-----K-LIEGDITKIDEK------------------DF-IPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred EEEEEeCCHHHHHHHHHhCCC-----C-CccCccccCchh------------------hc-CCCCCEEEeCCCChhhhHH
Confidence 378999999999999887632 1 344555443210 00 2468999999999988776
Q ss_pred ccC
Q 007036 81 RKA 83 (620)
Q Consensus 81 rK~ 83 (620)
.++
T Consensus 79 g~~ 81 (275)
T cd00315 79 GKR 81 (275)
T ss_pred hhc
Confidence 654
No 186
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=44.50 E-value=1.2e+02 Score=30.89 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcccCCEEEEeecCCC
Q 007036 101 LQVQIAMRGISLLKVGGRIVYSTCSMN 127 (620)
Q Consensus 101 lQ~~IL~rAl~lLk~GG~LVYSTCSln 127 (620)
...+.+.+..++|+|||++++.|=.+.
T Consensus 133 ~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 133 MRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 346778888999999997555444443
No 187
>KOG2730 consensus Methylase [General function prediction only]
Probab=43.54 E-value=12 Score=38.78 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=46.2
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCc-EEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTAN-LIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~n-v~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|||.|+|+-|+.|-+||++-.|+++ |..++.|....-. . .......+|.|..=+|-+|.|-+
T Consensus 119 VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~-----~------------lq~~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 119 VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLAS-----K------------LKADKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHH-----H------------HhhhhheeeeeecCCCCCCcchh
Confidence 7899999999999999999999986 4455666533210 0 00111235677777899999888
Q ss_pred ccCc
Q 007036 81 RKAP 84 (620)
Q Consensus 81 rK~p 84 (620)
+...
T Consensus 182 ~~~~ 185 (263)
T KOG2730|consen 182 RADV 185 (263)
T ss_pred hhhh
Confidence 7653
No 188
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=42.01 E-value=52 Score=35.46 Aligned_cols=74 Identities=18% Similarity=0.214 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCcccCCCccccccccCCccccchhhH
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 182 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v 182 (620)
.+.|..|..+|+|||+|+- =|++..|+-- |..+++..... .++..+|-. ..+ .|+...+.....+.+|+
T Consensus 220 ~~~L~~~~~~L~~gGrl~V--ISfHSLEDRi-VK~~f~~~~~~----~~~~~~~~~--~~~--~~~~lt~k~i~ps~~Ei 288 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSI--ISFHSLEDRI-VKNFFRELSKF----PQPPGLPVK--ETP--LYALITKKPITPSEEEI 288 (305)
T ss_pred HHHHHHHHHHhcCCCEEEE--EecCcHHHHH-HHHHHHHhccc----CCCCCCCcc--ccc--ceeEccCCCcCCCHHHH
Confidence 3567888999999999985 4688888755 46666654211 123344421 112 37665555556778888
Q ss_pred Hhhhc
Q 007036 183 RKFRR 187 (620)
Q Consensus 183 ~~~~~ 187 (620)
..+-|
T Consensus 289 ~~NpR 293 (305)
T TIGR00006 289 KENPR 293 (305)
T ss_pred HhCcc
Confidence 76655
No 189
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=41.95 E-value=25 Score=38.84 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=63.7
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTLR 81 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtlr 81 (620)
|++||++++=+++++.|+++-...+..++|.||-.+-. .....||.|=+|+= |
T Consensus 79 v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~--------------------~~~~~fd~IDiDPF----G--- 131 (380)
T COG1867 79 VVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLH--------------------ELHRAFDVIDIDPF----G--- 131 (380)
T ss_pred EEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHH--------------------hcCCCccEEecCCC----C---
Confidence 79999999999999999998766778888888854321 01267999999874 1
Q ss_pred cCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC-CChhccHHHHHHHHHhCC
Q 007036 82 KAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS-MNPVENEAVVAEILRKCE 143 (620)
Q Consensus 82 K~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS-lnP~ENEaVV~~~L~~~~ 143 (620)
+| .-.|..|++.++.||.|.- ||| ..|...- .-...++++.
T Consensus 132 ---------SP----------aPFlDaA~~s~~~~G~l~v-TATD~a~L~G~-~p~~c~rkY~ 173 (380)
T COG1867 132 ---------SP----------APFLDAALRSVRRGGLLCV-TATDTAPLCGS-YPRKCRRKYG 173 (380)
T ss_pred ---------CC----------chHHHHHHHHhhcCCEEEE-EecccccccCC-ChHHHHHHhc
Confidence 22 2356788999999888766 444 3332222 2245555553
No 190
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=40.95 E-value=1.2e+02 Score=29.88 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=24.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHE 33 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~D 33 (620)
|++.|++..-+...+.++...+. .++.+...|
T Consensus 88 v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 88 VVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 68999999988888888877765 456666555
No 191
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=39.04 E-value=1.3e+02 Score=31.85 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHH
Q 007036 102 QVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEI 138 (620)
Q Consensus 102 Q~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~ 138 (620)
+.++|.+..+.|+|||+++-..=+.. +.+++..+
T Consensus 156 ~~~~L~~i~~~L~pgG~~lig~d~~~---~~~~~~~a 189 (301)
T TIGR03438 156 AVAFLRRIRQLLGPGGGLLIGVDLVK---DPAVLEAA 189 (301)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccCCC---CHHHHHHh
Confidence 47899999999999999987554443 44555333
No 192
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=37.61 E-value=62 Score=38.05 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCccEEEEcC--CCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHH
Q 007036 63 LLFDRVLCDV--PCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILR 140 (620)
Q Consensus 63 ~~FDrILlDv--PCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~ 140 (620)
..||.|.+|+ | .|||++|.. .++.+-.+++++||+++=-||+ ..|..-|.
T Consensus 165 ~~~d~~~lD~FsP-------~~np~~W~~--------------~~~~~l~~~~~~~~~~~t~t~a-------~~vr~~l~ 216 (662)
T PRK01747 165 ARADAWFLDGFAP-------AKNPDMWSP--------------NLFNALARLARPGATLATFTSA-------GFVRRGLQ 216 (662)
T ss_pred ccccEEEeCCCCC-------ccChhhccH--------------HHHHHHHHHhCCCCEEEEeehH-------HHHHHHHH
Confidence 4599999995 5 689999754 5677778899999999844443 67888888
Q ss_pred hCCC
Q 007036 141 KCEG 144 (620)
Q Consensus 141 ~~~~ 144 (620)
..+-
T Consensus 217 ~~GF 220 (662)
T PRK01747 217 EAGF 220 (662)
T ss_pred HcCC
Confidence 8863
No 193
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.36 E-value=85 Score=30.40 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=42.5
Q ss_pred cEEEEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCc
Q 007036 66 DRVLCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGS 145 (620)
Q Consensus 66 DrILlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~ 145 (620)
|.|+.|+|=-..-.. .+...+.. ......+......+|..+.++||+||.+ |.-|+-...-+ .++..+++..+ .
T Consensus 2 dliitDPPY~~~~~~-~~~~~~~~--~~~~~~y~~~~~~~~~~~~rvLk~~g~~-~i~~~~~~~~~-~~~~~~~~~~g-~ 75 (231)
T PF01555_consen 2 DLIITDPPYNIGKDY-NNYFDYGD--NKNHEEYLEWMEEWLKECYRVLKPGGSI-FIFIDDREIAG-FLFELALEIFG-G 75 (231)
T ss_dssp EEEEE---TSSSCS------CSCH--CCHHHHHHHHHHHHHHHHHHHEEEEEEE-EEEE-CCEECT-HHHHHHHHHHT-T
T ss_pred CEEEECCCCCCCCCc-chhhhccC--CCCHHHHHHHHHHHHHHHHhhcCCCeeE-EEEecchhhhH-HHHHHHHHHhh-h
Confidence 778888883222110 11111111 1235566777888999999999998886 44566555444 36666666655 4
Q ss_pred eEEee
Q 007036 146 VELVD 150 (620)
Q Consensus 146 ~eLvd 150 (620)
+.+++
T Consensus 76 ~~~~~ 80 (231)
T PF01555_consen 76 FFLRN 80 (231)
T ss_dssp -EEEE
T ss_pred hheec
Confidence 55544
No 194
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=33.91 E-value=73 Score=32.90 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=28.8
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFP 38 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p 38 (620)
|+|.|+|..-+..+.++++. .+|+.+++.|+..++
T Consensus 54 v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 54 VYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVD 88 (258)
T ss_pred EEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCC
Confidence 78999999988888877654 468999999997754
No 195
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=33.05 E-value=61 Score=36.41 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=38.6
Q ss_pred HHHHHhHhcCCCCCCCCCceEeecCC-CCcceEEEEeCHHHHHHHHhcccCCCccEEEEceEeeEEEecCCCC
Q 007036 393 INSIKTFYGIDDSFQLSGQLVSRNGD-TNRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREG 464 (620)
Q Consensus 393 ~~~I~~fYgi~~~Fp~~~~Lv~Rn~~-g~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~GvK~F~rq~~~~~ 464 (620)
....++-.||.+-|++--.+|+...- -.....+.|-.+.++++...=.. .+ =+|+-++....
T Consensus 200 h~~af~~~GL~~aw~rvi~vVVQpGvef~~~~V~~y~~~~A~~Ls~~~~~--~~--------lvfEaHSTDYQ 262 (421)
T PRK15052 200 HQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALSAWIEN--TP--------MVYEAHSTDYQ 262 (421)
T ss_pred HHHHHHHcCchhhhccceEEEEeCCeeeCCCCeeecCHHHHHHHHHHhcC--CC--------EEEeecCcccC
Confidence 33445556888889887666654321 03678899988888887543211 12 26888876654
No 196
>KOG3492 consensus Ribosome biogenesis protein NIP7 [Translation, ribosomal structure and biogenesis]
Probab=32.34 E-value=1.5e+02 Score=29.13 Aligned_cols=120 Identities=20% Similarity=0.363 Sum_probs=71.3
Q ss_pred hhHHHHHhHhcCCCCCCCCCceEeecCCC----CcceEEEEeCHHHHHHHHhcccCCCccEEEEceEeeEEEecCCCCCC
Q 007036 391 TIINSIKTFYGIDDSFQLSGQLVSRNGDT----NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNS 466 (620)
Q Consensus 391 ~~~~~I~~fYgi~~~Fp~~~~Lv~Rn~~g----~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~GvK~F~rq~~~~~~~ 466 (620)
.+++.+..|-|=+-+ +|+.|.... .+.-++||+|+-+...-. +. .+=++++.|. .|.|-. +
T Consensus 11 ~vfekla~yIG~Nv~-----~lidr~D~~~cfrlhkdRVyyvsEr~~k~a~-~i---sr~~L~s~Gt-c~GKFT-K---- 75 (180)
T KOG3492|consen 11 VVFEKLAKYIGDNVS-----HLIDRPDGTYCFRLHKDRVYYVSERIMKLAA-CI---SRKNLVSLGT-CFGKFT-K---- 75 (180)
T ss_pred HHHHHHHHHHhhhhh-----eeecCCCCceeeEeeCceEEeehHHHHHHHh-hh---cccceeEEeE-EEeeee-c----
Confidence 568889988886533 333333221 245799999999987644 33 3567788886 344432 1
Q ss_pred CccceeeccCchhhhhhcccCcE-EecCHHHHHHHhhcCCCCcccCCChHHHHHHhcCCCceEEEEEe
Q 007036 467 APCSFRISSEGLPVILPYITKQI-LYASLVDFKHLLQYKTIKFADFVDAEFGEKASKLMMGCCVIVLS 533 (620)
Q Consensus 467 ~~C~~RI~qEGl~~l~p~i~kRi-v~~~~~dl~~LL~~~~~~~~~~~d~e~~e~~~~l~~Gc~vl~~~ 533 (620)
.-.||+.--.|.+|.||-.-.+ |.-+.| ...|-- +..+..-++.--+++.++.-|+++.
T Consensus 76 -t~kfrlhitaL~~La~~Ak~KvWiKp~~E-m~flYG------NhvlKs~vgRitd~~p~~~GVvVys 135 (180)
T KOG3492|consen 76 -TGKFRLHITALDYLAPYAKYKVWIKPNAE-MQFLYG------NHVLKSGVGRITDGIPQHQGVVVYS 135 (180)
T ss_pred -cceEEEeeeehhhhhhhhheeEEeccCcc-cceeec------ccchhcccceecCCCCCcceEEEEe
Confidence 1489999999999999976443 444433 222211 1122223344444566666677666
No 197
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=32.17 E-value=38 Score=36.33 Aligned_cols=57 Identities=18% Similarity=0.122 Sum_probs=43.0
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|+|.|.|+.-+....+.++. ..++.+.+.++..+.... ......||.||+|-=||..
T Consensus 47 VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l-----------------~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 47 LIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVL-----------------AEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred EEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHH-----------------HcCCCccCEEEECCCcccc
Confidence 89999999999888877765 468999999988875321 0011269999999988864
No 198
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=32.00 E-value=64 Score=33.97 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcccCCEEEEeecCC
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
.+-+.+..++|||||.|++.---.
T Consensus 163 ~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 163 QSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred HHHHHHHHHHhCCCcEEEEeeccc
Confidence 456778889999999999764433
No 199
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.95 E-value=53 Score=37.68 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=55.4
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEcc-ccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNH-EAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~-Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|||.+..=....+.|++.-++..++..++ ||...= + .+......||.|=+|+==|
T Consensus 137 v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM---~--------------~~~~~~~~FDvIDLDPyGs----- 194 (525)
T KOG1253|consen 137 VVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLM---Y--------------EHPMVAKFFDVIDLDPYGS----- 194 (525)
T ss_pred hcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHH---H--------------hccccccccceEecCCCCC-----
Confidence 7899999999999999999888776554443 443210 0 0111126799999997422
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS 125 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS 125 (620)
+ ...|+.|++-++-|| |+|.|||
T Consensus 195 -----------~----------s~FLDsAvqav~~gG-LL~vT~T 217 (525)
T KOG1253|consen 195 -----------P----------SPFLDSAVQAVRDGG-LLCVTCT 217 (525)
T ss_pred -----------c----------cHHHHHHHHHhhcCC-EEEEEec
Confidence 1 246888999999966 5677997
No 200
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=31.88 E-value=82 Score=34.54 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=19.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcEEEEccccCC
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQH 36 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv~vtn~Da~~ 36 (620)
|+|.|.+..+++. +++||...++... |...
T Consensus 193 Via~~~~~~K~e~----a~~lGAd~~i~~~-~~~~ 222 (339)
T COG1064 193 VIAITRSEEKLEL----AKKLGADHVINSS-DSDA 222 (339)
T ss_pred EEEEeCChHHHHH----HHHhCCcEEEEcC-Cchh
Confidence 7888888887655 4578876655444 4433
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=31.03 E-value=1.6e+02 Score=31.04 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=51.2
Q ss_pred EEEEcCChhHHHHHHHHHHH----hCCCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCccc
Q 007036 2 VIANDLDVQRCNLLIHQTKR----MCTANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGD 77 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kR----lg~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGd 77 (620)
|+-.|+|..=+++.++-+-. +.-|++.+... +. .....+||.|++|..
T Consensus 97 v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~--------------------~~~~~~fDVIIvDs~---- 148 (262)
T PRK00536 97 VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL--------------------DLDIKKYDLIICLQE---- 148 (262)
T ss_pred eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh--------------------hccCCcCCEEEEcCC----
Confidence 56788888766666653332 33455665541 10 001257999999942
Q ss_pred cccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 78 GTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 78 GtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
+ + ..-.....+.|++||.+|-=.-|... ...++..+.+..+
T Consensus 149 ------~------~-----------~~fy~~~~~~L~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l~ 189 (262)
T PRK00536 149 ------P------D-----------IHKIDGLKRMLKEDGVFISVAKHPLL--EHVSMQNALKNMG 189 (262)
T ss_pred ------C------C-----------hHHHHHHHHhcCCCcEEEECCCCccc--CHHHHHHHHHHHH
Confidence 1 1 22235567789999999985444443 2345566655543
No 202
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=30.56 E-value=3.4e+02 Score=29.49 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=64.5
Q ss_pred EEEEcCChhHHHHHHHHHHHhCCCcE-EEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCTANL-IVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~~nv-~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|.-+|.++.=+..=.+.++..|..++ ...+.||-....+. . .....+.+++ +|.+
T Consensus 164 i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~--~----------------l~p~P~l~iV------sGL~ 219 (311)
T PF12147_consen 164 ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA--A----------------LDPAPTLAIV------SGLY 219 (311)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh--c----------------cCCCCCEEEE------ecch
Confidence 45567777777777778888898887 88888885533221 0 0022344444 2322
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCC
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCE 143 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~ 143 (620)
---|| .+ +=.+.|.....++.|||+|||+.=-.||.= +.|+.+|..|.
T Consensus 220 ElF~D-------n~------lv~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr 267 (311)
T PF12147_consen 220 ELFPD-------ND------LVRRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHR 267 (311)
T ss_pred hhCCc-------HH------HHHHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhccc
Confidence 22222 11 113345666788999999999888889842 45899998874
No 203
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=26.79 E-value=91 Score=35.36 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred EEEEcCChhHHHHHHHHHHHhCC-CcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCCcccccc
Q 007036 2 VIANDLDVQRCNLLIHQTKRMCT-ANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPCSGDGTL 80 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~kRlg~-~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPCSGdGtl 80 (620)
|+|.+.++.=...|++.+++-+. ..|.|++.|...+.. +.++|.|+=--= |.
T Consensus 217 VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l----------------------pekvDIIVSElL----Gs- 269 (448)
T PF05185_consen 217 VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL----------------------PEKVDIIVSELL----GS- 269 (448)
T ss_dssp EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH----------------------SS-EEEEEE-------BT-
T ss_pred EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC----------------------CCceeEEEEecc----CC-
Confidence 78999999888888888788776 579999999887531 256787763210 11
Q ss_pred ccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecC--CChhccHHHHHHHH
Q 007036 81 RKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCS--MNPVENEAVVAEIL 139 (620)
Q Consensus 81 rK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCS--lnP~ENEaVV~~~L 139 (620)
-.+.++--+.|..+-++|||||+++=+.++ +.|++.+.+-+.+.
T Consensus 270 ---------------fg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~ 315 (448)
T PF05185_consen 270 ---------------FGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVR 315 (448)
T ss_dssp ---------------TBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHH
T ss_pred ---------------ccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHH
Confidence 123334456678888899999999865555 56778777666654
No 204
>PRK11630 hypothetical protein; Provisional
Probab=24.87 E-value=80 Score=31.84 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=30.9
Q ss_pred HHHHHHHhhcccCCEEEEeecCCChh----ccHHHHHHHHH
Q 007036 104 QIAMRGISLLKVGGRIVYSTCSMNPV----ENEAVVAEILR 140 (620)
Q Consensus 104 ~IL~rAl~lLk~GG~LVYSTCSlnP~----ENEaVV~~~L~ 140 (620)
+.+.+|+++|+.||.++|-|=|++-. .|++-|+.+.+
T Consensus 15 ~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~ 55 (206)
T PRK11630 15 RLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICR 55 (206)
T ss_pred HHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHH
Confidence 35788999999999999999887654 78888888865
No 205
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=24.58 E-value=1.1e+02 Score=34.61 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=45.7
Q ss_pred HHHHHhHhcCCCCCCCCCceEeecCCC--CcceEEEEeCHHHHHHHHhcccCCCccEEEEceEeeEEEecCCCCCCCccc
Q 007036 393 INSIKTFYGIDDSFQLSGQLVSRNGDT--NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCS 470 (620)
Q Consensus 393 ~~~I~~fYgi~~~Fp~~~~Lv~Rn~~g--~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~GvK~F~rq~~~~~~~~~C~ 470 (620)
....++-.||.+-|++--.+|+.. +. .+...+.|-.+.++++...=. .-+.=+|+-++..... ...-
T Consensus 204 h~~af~~~GL~~aw~rvi~~VVQp-GVef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDYQt-~~al 272 (426)
T PRK15458 204 HRHAFEKQGLNAIWPRIIGLVVQP-GVEFDHTNVIDYQPEKASALSQMVE---------NYETLVFEAHSTDYQT-PQAL 272 (426)
T ss_pred HHHHHHHcCchhhhccceEEEEeC-CeeecCcCccccCHHHHHHHHHHHH---------hCCCceeecCCccCCC-HHHH
Confidence 344455568888898876666543 22 356789998888888753211 1245578988766542 1222
Q ss_pred eeeccCchhhh
Q 007036 471 FRISSEGLPVI 481 (620)
Q Consensus 471 ~RI~qEGl~~l 481 (620)
-++..+|+.++
T Consensus 273 ~~lv~dgfaiL 283 (426)
T PRK15458 273 RQLVIDHFAIL 283 (426)
T ss_pred HHHHhcCceee
Confidence 33445555443
No 206
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=24.30 E-value=1.1e+02 Score=34.45 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHHhHhcCCCCCCCCCceEeecCCC-CcceEEEEeCHHHHHHHHhcccCCCccEEEEceEeeEEEecCCCCCCCccce
Q 007036 393 INSIKTFYGIDDSFQLSGQLVSRNGDT-NRVKRIYYVSKSVKDALDLNFRVGQQLKITSVGLKMFERQTSREGNSAPCSF 471 (620)
Q Consensus 393 ~~~I~~fYgi~~~Fp~~~~Lv~Rn~~g-~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~GvK~F~rq~~~~~~~~~C~~ 471 (620)
....++-.||.+-|++--.+|+...-. .....+.|-.+.++++...=. .-+.=+|+-++..... ...--
T Consensus 200 h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~---------~~~~lvfEaHSTDYQt-~~al~ 269 (420)
T TIGR02810 200 HRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVID---------NTPGLVFEAHSTDYQT-PAALR 269 (420)
T ss_pred HHHHHHHcCchhhhccceEEEecCCeeECCCceeecCHHHHHHHHHHHH---------hCCCceeecCCccCCC-HHHHH
Confidence 344455568888898876666543211 366889998888888753221 1245588888766542 12223
Q ss_pred eeccCchhhh
Q 007036 472 RISSEGLPVI 481 (620)
Q Consensus 472 RI~qEGl~~l 481 (620)
++..+|+.++
T Consensus 270 ~lv~dgfaiL 279 (420)
T TIGR02810 270 ALVRDHFAIL 279 (420)
T ss_pred HHHhcCceee
Confidence 3444554443
No 207
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=23.41 E-value=67 Score=36.12 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=23.9
Q ss_pred EEEEeecCCChhccHHHHHHHHHhCC--Cc-eEEeeCCCcCCCcccCCCccccc
Q 007036 118 RIVYSTCSMNPVENEAVVAEILRKCE--GS-VELVDVSNEVPQLIHRPGLRKWK 168 (620)
Q Consensus 118 ~LVYSTCSlnP~ENEaVV~~~L~~~~--~~-~eLvd~~~~lp~l~~~pGl~~W~ 168 (620)
.=+||-||.|| .||.++|+... +. +-+.-.+++.-. .-|++.|+
T Consensus 17 ~gI~SVCsahp----~VieAAl~~a~~~~~pvLiEAT~NQVnq---~GGYTGmt 63 (424)
T PF08013_consen 17 VGIYSVCSAHP----LVIEAALERAKEDDSPVLIEATSNQVNQ---FGGYTGMT 63 (424)
T ss_dssp B-EEEE----H----HHHHHHHHHCCCS-S-EEEEEETTTCST---T-TTTTB-
T ss_pred CceEEecCCCH----HHHHHHHHHHHhcCCeEEEEeccccccc---cCCcCCCC
Confidence 45999999999 89999998753 23 333334555443 35777775
No 208
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.39 E-value=3.2e+02 Score=26.93 Aligned_cols=109 Identities=23% Similarity=0.274 Sum_probs=60.5
Q ss_pred EEEEcCChhHHHHHH------------HHHHHhC-CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEE
Q 007036 2 VIANDLDVQRCNLLI------------HQTKRMC-TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRV 68 (620)
Q Consensus 2 VvAnD~d~kR~~~L~------------~~~kRlg-~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrI 68 (620)
|++.|+|..|+..|. ..+++.. ..++..+.. ... .....|.|
T Consensus 26 V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~-~~~------------------------ai~~adv~ 80 (185)
T PF03721_consen 26 VIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTD-IEE------------------------AIKDADVV 80 (185)
T ss_dssp EEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESE-HHH------------------------HHHH-SEE
T ss_pred EEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhh-hhh------------------------hhhccceE
Confidence 799999999999885 2233322 345555421 100 01346888
Q ss_pred EEcCCCccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCC---c
Q 007036 69 LCDVPCSGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEG---S 145 (620)
Q Consensus 69 LlDvPCSGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~---~ 145 (620)
++-||.=-++ ...||+ ..+ ...+....+.+++|..+|+ -+|+.|--.+.++..+|++.++ .
T Consensus 81 ~I~VpTP~~~--~~~~Dl------------s~v-~~a~~~i~~~l~~~~lvV~-~STvppGtt~~~~~~ile~~~~~~~~ 144 (185)
T PF03721_consen 81 FICVPTPSDE--DGSPDL------------SYV-ESAIESIAPVLRPGDLVVI-ESTVPPGTTEELLKPILEKRSGKKED 144 (185)
T ss_dssp EE----EBET--TTSBET------------HHH-HHHHHHHHHHHCSCEEEEE-SSSSSTTHHHHHHHHHHHHHCCTTTC
T ss_pred EEecCCCccc--cCCccH------------HHH-HHHHHHHHHHHhhcceEEE-ccEEEEeeehHhhhhhhhhhcccccC
Confidence 8888765554 233443 111 2344455566777555555 7888999999999999998764 4
Q ss_pred eEEeeC
Q 007036 146 VELVDV 151 (620)
Q Consensus 146 ~eLvd~ 151 (620)
|.++=.
T Consensus 145 f~la~~ 150 (185)
T PF03721_consen 145 FHLAYS 150 (185)
T ss_dssp EEEEE-
T ss_pred CeEEEC
Confidence 555544
No 209
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=22.73 E-value=1.8e+02 Score=31.26 Aligned_cols=68 Identities=22% Similarity=0.265 Sum_probs=42.9
Q ss_pred HHHHHHHHhhcccCCEEEEeecCCChhccHHHHHHHHHhCCCceEEeeCCCcCCCcccCCCccccccccCCccccchhhH
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSMNPVENEAVVAEILRKCEGSVELVDVSNEVPQLIHRPGLRKWKVRDKGIWLASHKHV 182 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSlnP~ENEaVV~~~L~~~~~~~eLvd~~~~lp~l~~~pGl~~W~v~~~~~~~~~~~~v 182 (620)
.+.|..|..+|++||+|+-- |++..|+- .|..+++.+.... + ..-..|+...+.....|.+|+
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDr-iVK~~f~~~~~~~---------~-----~~~~~~~~~~~k~i~ps~~Ei 278 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDR-IVKRFFRELSKGC---------C-----GNKPKLKLLTKKPIKPSEEEI 278 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHH-HHHHHHHHhcccc---------c-----ccCCceEEcCCCCcCCCHHHH
Confidence 36788899999999998754 67777875 5566666543110 0 001235555555556778888
Q ss_pred Hhhhc
Q 007036 183 RKFRR 187 (620)
Q Consensus 183 ~~~~~ 187 (620)
..+-|
T Consensus 279 ~~NpR 283 (296)
T PRK00050 279 AANPR 283 (296)
T ss_pred HhCcc
Confidence 76654
No 210
>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional
Probab=22.59 E-value=1e+02 Score=30.61 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcccCCEEEEeecCCChh----ccHHHHHHHHH
Q 007036 102 QVQIAMRGISLLKVGGRIVYSTCSMNPV----ENEAVVAEILR 140 (620)
Q Consensus 102 Q~~IL~rAl~lLk~GG~LVYSTCSlnP~----ENEaVV~~~L~ 140 (620)
|.+.+..|++.|+.||.++|-|=|++-. .|++-|+.+.+
T Consensus 6 ~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~ 48 (190)
T PRK10634 6 QGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLE 48 (190)
T ss_pred cHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHH
Confidence 5667889999999999999999776544 68888888775
No 211
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=22.49 E-value=92 Score=29.62 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=32.2
Q ss_pred HhHhcCCCCCCCCCceEeecCCCCcceEEEEeCHHHHHHHHhcccCCCccEEEEc
Q 007036 397 KTFYGIDDSFQLSGQLVSRNGDTNRVKRIYYVSKSVKDALDLNFRVGQQLKITSV 451 (620)
Q Consensus 397 ~~fYgi~~~Fp~~~~Lv~Rn~~g~~~k~IYyvS~~vk~il~~N~~~g~~lkii~~ 451 (620)
++|-|.. -+|-.+.++||+. | |.+||.|.-.+....... .-++|+..-.
T Consensus 7 CsFcG~k-IyPG~G~~fVR~D-G---kvf~FcssKC~k~f~~kR-nPRKlkWT~~ 55 (131)
T PRK14891 7 CDYTGEE-IEPGTGTMFVRKD-G---TVLHFVDSKCEKNYDLGR-EARDLEWTEA 55 (131)
T ss_pred ecCcCCc-ccCCCCcEEEecC-C---CEEEEecHHHHHHHHccC-CCccchhHHH
Confidence 4566655 6898999999995 5 899999988775432221 1145555433
No 212
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.78 E-value=2.4e+02 Score=31.73 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=51.2
Q ss_pred EEEEcCChhHHHHHHHHH--HHhC-----CCcEEEEccccCCCCCCccCCCCCcCCCcCcccccccccCCccEEEEcCCC
Q 007036 2 VIANDLDVQRCNLLIHQT--KRMC-----TANLIVTNHEAQHFPGCRANKNFSSASDKGIESESNMGQLLFDRVLCDVPC 74 (620)
Q Consensus 2 VvAnD~d~kR~~~L~~~~--kRlg-----~~nv~vtn~Da~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~FDrILlDvPC 74 (620)
|.-.|.|++=++.-.|+. ..+| =+.+.|.+.||-.+-. .....||.|++|-|
T Consensus 316 I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr--------------------~a~~~fD~vIVDl~- 374 (508)
T COG4262 316 ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLR--------------------TAADMFDVVIVDLP- 374 (508)
T ss_pred EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHH--------------------hhcccccEEEEeCC-
Confidence 456788998888887664 3344 3678999999866521 11258999999987
Q ss_pred ccccccccCcccccccCcchhhhhHHHHHHHHHHHHhhcccCCEEEE
Q 007036 75 SGDGTLRKAPDIWRKWNVGLGNGLHSLQVQIAMRGISLLKVGGRIVY 121 (620)
Q Consensus 75 SGdGtlrK~pdiw~~w~~~~~~~L~~lQ~~IL~rAl~lLk~GG~LVY 121 (620)
+|+ ++..+.-++.-=.++|. .-|+++|++|-
T Consensus 375 --------DP~-----tps~~rlYS~eFY~ll~---~~l~e~Gl~Vv 405 (508)
T COG4262 375 --------DPS-----TPSIGRLYSVEFYRLLS---RHLAETGLMVV 405 (508)
T ss_pred --------CCC-----CcchhhhhhHHHHHHHH---HhcCcCceEEE
Confidence 333 22222222222233433 45788998874
No 213
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=20.64 E-value=69 Score=29.23 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcccCCEEEEeecCC
Q 007036 103 VQIAMRGISLLKVGGRIVYSTCSM 126 (620)
Q Consensus 103 ~~IL~rAl~lLk~GG~LVYSTCSl 126 (620)
..+|.+..++|||||+++-++=..
T Consensus 95 ~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 95 EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 578899999999999999988544
Done!