Query 007037
Match_columns 620
No_of_seqs 150 out of 1021
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 18:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02432 Nodulin-21_like_1 Nodu 100.0 5.6E-39 1.2E-43 315.8 18.6 170 417-594 4-218 (218)
2 cd02433 Nodulin-21_like_2 Nodu 100.0 6.7E-39 1.5E-43 318.3 17.9 173 416-595 15-234 (234)
3 cd02434 Nodulin-21_like_3 Nodu 100.0 6.5E-38 1.4E-42 309.0 18.8 173 419-594 1-224 (225)
4 cd02435 CCC1 CCC1. CCC1: This 100.0 2.9E-37 6.3E-42 307.7 18.1 170 417-594 18-241 (241)
5 PF01988 VIT1: VIT family; In 100.0 2E-36 4.3E-41 294.2 18.1 167 420-593 1-213 (213)
6 cd02431 Ferritin_CCC1_C CCC1-r 100.0 1.2E-34 2.6E-39 271.3 16.0 148 421-594 1-149 (149)
7 cd02437 CCC1_like_1 CCC1-relat 100.0 1.7E-32 3.6E-37 260.6 16.6 167 420-594 2-175 (175)
8 TIGR00267 conserved hypothetic 100.0 1.1E-32 2.3E-37 261.7 15.0 160 422-592 1-168 (169)
9 KOG4473 Uncharacterized membra 100.0 2.4E-31 5.2E-36 261.4 11.3 175 414-595 28-247 (247)
10 cd01059 CCC1_like CCC1-related 100.0 2E-29 4.3E-34 232.7 15.3 141 421-594 1-143 (143)
11 cd02436 Nodulin-21 Nodulin-21. 99.9 2E-26 4.4E-31 216.7 13.5 140 419-563 1-149 (152)
12 COG1814 Uncharacterized membra 99.8 1.7E-19 3.6E-24 178.6 16.0 175 416-597 7-228 (229)
13 COG1814 Uncharacterized membra 93.8 0.5 1.1E-05 47.8 10.3 148 415-594 78-229 (229)
14 PF08006 DUF1700: Protein of u 93.4 1.2 2.6E-05 43.0 11.8 31 570-600 140-170 (181)
15 PF10507 DUF2453: Protein of u 76.4 8.9 0.00019 35.9 6.6 44 431-481 24-68 (111)
16 TIGR02185 Trep_Strep conserved 74.0 98 0.0021 30.8 14.1 31 499-529 101-131 (189)
17 COG4709 Predicted membrane pro 73.1 49 0.0011 33.8 11.3 20 572-591 145-164 (195)
18 KOG4619 Uncharacterized conser 72.4 5.9 0.00013 36.0 4.3 32 451-482 20-52 (105)
19 PF03839 Sec62: Translocation 70.5 6.2 0.00013 40.7 4.6 74 506-606 113-192 (224)
20 PRK00293 dipZ thiol:disulfide 69.8 1.2E+02 0.0026 34.9 15.0 46 420-468 209-262 (571)
21 PRK09573 (S)-2,3-di-O-geranylg 69.7 1.4E+02 0.0031 30.8 14.5 27 567-593 251-277 (279)
22 TIGR00145 FTR1 family protein. 66.3 1.9E+02 0.0041 30.9 19.3 174 418-605 35-213 (283)
23 TIGR01299 synapt_SV2 synaptic 64.6 2.3E+02 0.005 33.9 16.3 27 448-474 200-227 (742)
24 PF05128 DUF697: Domain of unk 61.2 1.1E+02 0.0025 29.1 10.9 39 568-606 105-144 (162)
25 PF09605 Trep_Strep: Hypotheti 60.7 1.8E+02 0.0039 28.8 13.7 9 521-529 120-128 (186)
26 PTZ00207 hypothetical protein; 60.7 3.3E+02 0.0072 31.9 17.3 36 410-445 19-55 (591)
27 KOG2675 Adenylate cyclase-asso 58.1 6.5 0.00014 44.2 2.2 16 259-274 349-364 (480)
28 PF03176 MMPL: MMPL family; I 57.0 66 0.0014 33.3 9.2 24 503-526 250-273 (333)
29 TIGR00400 mgtE Mg2+ transporte 56.9 2.6E+02 0.0057 31.1 14.3 21 572-592 424-444 (449)
30 cd00400 Voltage_gated_ClC CLC 55.5 1.7E+02 0.0036 31.4 12.2 32 432-463 90-121 (383)
31 PRK01030 tetrahydromethanopter 55.1 1.3E+02 0.0027 32.3 10.7 76 507-588 163-238 (264)
32 PLN03132 NADH dehydrogenase (u 54.5 6.9 0.00015 44.1 1.7 21 39-59 6-26 (461)
33 smart00659 RPOLCX RNA polymera 53.9 8.6 0.00019 30.3 1.7 22 189-214 17-38 (44)
34 TIGR00267 conserved hypothetic 53.5 1.6E+02 0.0034 28.9 10.6 40 460-501 34-75 (169)
35 COG3135 BenE Uncharacterized p 53.1 49 0.0011 36.9 7.7 87 504-598 299-394 (402)
36 COG4709 Predicted membrane pro 52.4 1E+02 0.0023 31.6 9.3 22 572-593 152-173 (195)
37 TIGR01473 cyoE_ctaB protoheme 51.9 2.9E+02 0.0063 28.5 14.4 29 448-476 33-62 (280)
38 PLN02776 prenyltransferase 51.0 3.7E+02 0.0081 29.5 14.8 28 450-477 29-57 (341)
39 KOG2675 Adenylate cyclase-asso 50.9 9 0.00019 43.2 1.8 13 185-197 352-364 (480)
40 COG0375 HybF Zn finger protein 50.1 6.7 0.00014 36.9 0.6 13 188-200 83-95 (115)
41 PRK15374 pathogenicity island 49.9 2E+02 0.0044 33.8 12.1 42 423-468 318-359 (593)
42 PRK11469 hypothetical protein; 49.8 2.8E+02 0.0061 27.7 13.7 47 423-469 40-86 (188)
43 TIGR02359 thiW thiW protein. L 48.6 84 0.0018 31.0 7.9 72 503-593 46-117 (160)
44 PF09973 DUF2208: Predicted me 48.2 2.8E+02 0.006 29.2 11.9 37 431-469 9-45 (233)
45 PF12670 DUF3792: Protein of u 48.2 1.5E+02 0.0033 27.2 9.1 48 540-589 40-87 (116)
46 PF09586 YfhO: Bacterial membr 48.0 2.1E+02 0.0045 33.8 12.3 38 550-587 190-227 (843)
47 PRK00293 dipZ thiol:disulfide 47.6 3.8E+02 0.0082 31.0 14.0 21 542-562 332-353 (571)
48 PRK09573 (S)-2,3-di-O-geranylg 47.3 3.4E+02 0.0074 28.0 13.7 28 449-476 36-64 (279)
49 TIGR00869 sec62 protein transl 46.7 32 0.00069 35.9 4.9 77 507-606 122-198 (232)
50 PF13347 MFS_2: MFS/sugar tran 46.5 3.9E+02 0.0084 28.4 15.3 62 502-563 225-289 (428)
51 PF11364 DUF3165: Protein of u 46.2 82 0.0018 28.3 6.6 20 514-533 2-21 (81)
52 KOG0320 Predicted E3 ubiquitin 45.8 31 0.00068 34.9 4.5 69 205-275 68-138 (187)
53 PRK08633 2-acyl-glycerophospho 45.5 5.8E+02 0.013 30.6 15.6 12 552-563 283-294 (1146)
54 COG0038 EriC Chloride channel 44.4 3.5E+02 0.0075 30.3 12.8 28 567-594 265-292 (443)
55 PRK12438 hypothetical protein; 44.3 3.2E+02 0.007 34.2 13.3 22 586-607 218-239 (991)
56 PF04610 TrbL: TrbL/VirB6 plas 44.1 2.8E+02 0.006 26.4 10.6 35 567-601 155-189 (225)
57 PF06570 DUF1129: Protein of u 44.1 1.6E+02 0.0034 29.4 9.2 7 505-511 79-85 (206)
58 cd02437 CCC1_like_1 CCC1-relat 43.7 3.2E+02 0.007 26.7 11.6 80 500-589 93-174 (175)
59 PF06570 DUF1129: Protein of u 43.5 2.2E+02 0.0048 28.4 10.1 10 573-582 146-155 (206)
60 PF03649 UPF0014: Uncharacteri 42.9 1.4E+02 0.003 31.3 8.9 25 497-521 30-54 (250)
61 PRK10847 hypothetical protein; 42.3 3.7E+02 0.0081 27.0 12.3 36 435-470 53-93 (219)
62 PRK10263 DNA translocase FtsK; 42.0 2.5E+02 0.0055 36.2 12.2 25 578-602 167-191 (1355)
63 PF01595 DUF21: Domain of unkn 41.8 3E+02 0.0065 25.8 13.3 66 538-605 86-155 (183)
64 PF03806 ABG_transport: AbgT p 41.0 4.3E+02 0.0094 30.7 13.0 99 505-605 257-359 (502)
65 TIGR00844 c_cpa1 na(+)/h(+) an 41.0 7.2E+02 0.016 30.7 15.3 35 569-603 357-391 (810)
66 PF05628 Borrelia_P13: Borreli 40.7 48 0.001 32.2 4.7 49 546-594 45-93 (135)
67 COG4232 Thiol:disulfide interc 39.3 3.8E+02 0.0083 31.6 12.3 50 419-472 289-344 (569)
68 COG1033 Predicted exporters of 38.7 6E+02 0.013 30.9 14.1 16 503-518 298-313 (727)
69 COG1294 AppB Cytochrome bd-typ 38.5 3.7E+02 0.008 29.8 11.6 59 539-599 87-145 (346)
70 PF04211 MtrC: Tetrahydrometha 37.8 2.4E+02 0.0052 30.3 9.6 55 507-561 170-224 (262)
71 TIGR02002 PTS-II-BC-glcB PTS s 37.5 6.9E+02 0.015 28.7 14.7 25 419-443 208-232 (502)
72 COG0659 SUL1 Sulfate permease 37.4 6.9E+02 0.015 29.1 14.1 46 424-469 258-304 (554)
73 PRK14984 high-affinity glucona 37.2 6.8E+02 0.015 28.5 15.9 27 574-600 172-199 (438)
74 PF04657 DUF606: Protein of un 37.0 2.8E+02 0.0062 26.2 9.3 34 579-612 88-122 (138)
75 PF06157 DUF973: Protein of un 36.2 5.8E+02 0.013 27.4 15.9 64 541-605 119-183 (285)
76 TIGR00843 benE benzoate transp 36.0 1.2E+02 0.0026 34.0 7.5 82 504-594 300-391 (395)
77 TIGR02840 spore_YtaF putative 36.0 4.7E+02 0.01 26.4 12.9 51 419-469 29-80 (206)
78 PF07954 DUF1689: Protein of u 35.6 2.1E+02 0.0046 28.2 8.3 73 484-562 16-91 (152)
79 PRK04949 putative sulfate tran 35.6 3E+02 0.0065 28.8 10.0 60 458-528 168-227 (251)
80 TIGR00245 conserved hypothetic 35.4 1.9E+02 0.0042 30.2 8.6 22 541-562 32-53 (248)
81 COG0390 ABC-type uncharacteriz 35.3 2.1E+02 0.0045 30.6 8.7 51 538-593 34-84 (256)
82 TIGR01299 synapt_SV2 synaptic 35.1 6E+02 0.013 30.6 13.5 33 38-70 47-81 (742)
83 PF15461 BCD: Beta-carotene 15 34.1 5.6E+02 0.012 26.7 14.5 45 543-589 206-250 (259)
84 COG3677 Transposase and inacti 34.1 31 0.00067 32.7 2.4 19 269-287 54-73 (129)
85 TIGR00917 2A060601 Niemann-Pic 34.1 2.8E+02 0.0061 35.2 11.1 23 503-525 694-716 (1204)
86 TIGR00822 EII-Sor PTS system, 33.9 2.9E+02 0.0062 29.4 9.6 30 550-589 207-236 (265)
87 PF14205 Cys_rich_KTR: Cystein 33.8 19 0.0004 30.2 0.8 12 188-199 25-36 (55)
88 PRK00068 hypothetical protein; 33.5 6.2E+02 0.014 31.8 13.4 23 585-607 219-241 (970)
89 TIGR00373 conserved hypothetic 33.5 25 0.00055 34.0 1.8 19 180-198 97-116 (158)
90 COG0342 SecD Preprotein transl 33.2 2.2E+02 0.0048 32.8 9.3 23 569-591 465-487 (506)
91 PF06054 CoiA: Competence prot 32.5 34 0.00074 37.4 2.7 31 189-223 28-58 (375)
92 PF02632 BioY: BioY family; I 32.4 4.5E+02 0.0097 25.4 9.9 82 507-603 26-116 (148)
93 PF03547 Mem_trans: Membrane t 32.4 2E+02 0.0043 30.3 8.3 51 541-591 277-331 (385)
94 PF02683 DsbD: Cytochrome C bi 32.3 3.2E+02 0.007 26.9 9.2 21 505-525 2-22 (211)
95 COG1971 Predicted membrane pro 32.3 5.7E+02 0.012 26.2 15.0 43 554-600 124-166 (190)
96 PF06044 DRP: Dam-replacing fa 32.1 14 0.00031 38.9 -0.2 12 189-200 29-40 (254)
97 PF10011 DUF2254: Predicted me 32.1 4.4E+02 0.0095 28.8 10.9 60 503-563 92-151 (371)
98 PF07290 DUF1449: Protein of u 31.9 1.4E+02 0.003 30.5 6.7 21 508-528 50-70 (202)
99 TIGR00844 c_cpa1 na(+)/h(+) an 31.3 1.2E+02 0.0026 36.9 7.1 27 567-596 96-122 (810)
100 PF14362 DUF4407: Domain of un 31.3 5.4E+02 0.012 26.8 11.1 48 548-595 54-102 (301)
101 KOG2927 Membrane component of 31.0 35 0.00076 37.7 2.5 78 505-606 191-271 (372)
102 TIGR00792 gph sugar (Glycoside 31.0 6.3E+02 0.014 26.3 12.6 149 421-597 6-163 (437)
103 PRK06080 1,4-dihydroxy-2-napht 30.9 6.2E+02 0.013 26.2 15.0 49 433-481 17-70 (293)
104 PF11151 DUF2929: Protein of u 30.8 1.5E+02 0.0032 24.6 5.5 40 548-588 11-50 (57)
105 PF01213 CAP_N: Adenylate cycl 30.7 17 0.00036 39.2 0.0 9 49-57 234-242 (312)
106 PRK06041 flagellar assembly pr 30.6 9.2E+02 0.02 28.1 14.7 47 550-598 505-551 (553)
107 PF10136 SpecificRecomb: Site- 30.5 3.5E+02 0.0077 32.3 10.5 79 508-594 531-610 (643)
108 PF11368 DUF3169: Protein of u 30.2 6.1E+02 0.013 25.9 11.6 20 417-436 8-27 (248)
109 TIGR02865 spore_II_E stage II 30.2 66 0.0014 38.4 4.7 42 424-467 191-235 (764)
110 COG3125 CyoD Heme/copper-type 30.2 4.3E+02 0.0093 25.1 9.0 79 512-590 21-100 (111)
111 PF01040 UbiA: UbiA prenyltran 29.9 5.4E+02 0.012 25.2 10.9 33 448-480 21-54 (257)
112 PRK12874 ubiA prenyltransferas 29.8 4.5E+02 0.0098 27.8 10.3 27 448-474 45-72 (291)
113 KOG0057 Mitochondrial Fe/S clu 29.5 5.7E+02 0.012 30.4 11.6 82 506-594 141-222 (591)
114 PRK04375 protoheme IX farnesyl 29.5 6.9E+02 0.015 26.3 13.1 28 448-475 42-70 (296)
115 KOG4686 Predicted sugar transp 29.4 7.9E+02 0.017 27.8 12.1 130 417-583 301-432 (459)
116 PF09835 DUF2062: Uncharacteri 29.2 4.9E+02 0.011 24.5 12.2 32 494-526 9-40 (154)
117 PF13240 zinc_ribbon_2: zinc-r 29.1 24 0.00052 24.3 0.6 7 193-199 1-7 (23)
118 COG1996 RPC10 DNA-directed RNA 29.0 42 0.00091 27.5 2.0 24 186-213 19-42 (49)
119 PRK07566 bacteriochlorophyll/c 28.7 7.3E+02 0.016 26.4 12.4 13 420-432 160-172 (314)
120 PF02460 Patched: Patched fami 28.7 4.1E+02 0.0089 31.6 10.8 23 503-525 326-348 (798)
121 PRK12883 ubiA prenyltransferas 28.6 6.7E+02 0.014 25.8 16.1 27 567-593 249-275 (277)
122 COG0670 Integral membrane prot 28.5 2.9E+02 0.0063 28.7 8.5 45 539-585 116-160 (233)
123 PF11712 Vma12: Endoplasmic re 28.5 2.7E+02 0.0059 26.3 7.7 48 537-589 78-125 (142)
124 PRK13362 protoheme IX farnesyl 28.4 7.6E+02 0.016 26.4 13.7 39 435-473 29-71 (306)
125 PRK11660 putative transporter; 28.4 5.9E+02 0.013 29.3 11.7 132 423-586 72-222 (568)
126 cd01031 EriC ClC chloride chan 28.3 8.1E+02 0.017 26.7 12.7 32 432-463 91-122 (402)
127 COG1326 Uncharacterized archae 28.2 18 0.0004 36.9 -0.2 11 268-278 30-40 (201)
128 KOG1935 Membrane protein Patch 28.2 2.2E+02 0.0047 35.4 8.3 25 497-523 512-536 (1143)
129 PF03699 UPF0182: Uncharacteri 28.1 7.5E+02 0.016 30.3 12.8 18 588-605 210-227 (774)
130 PRK15065 PTS system mannose-sp 28.0 3.7E+02 0.008 28.6 9.2 30 550-589 208-237 (262)
131 TIGR01257 rim_protein retinal- 27.8 1.1E+03 0.024 32.5 15.1 92 499-591 1717-1814(2272)
132 PLN02436 cellulose synthase A 27.7 3.6E+02 0.0078 34.1 10.2 53 550-607 916-968 (1094)
133 PF01618 MotA_ExbB: MotA/TolQ/ 27.7 5E+02 0.011 24.1 10.1 32 569-600 98-129 (139)
134 PRK06814 acylglycerophosphoeth 27.6 4.7E+02 0.01 31.7 11.1 18 546-563 60-77 (1140)
135 TIGR00833 actII Transport prot 27.4 1.2E+03 0.026 28.6 14.4 20 504-523 281-300 (910)
136 KOG3415 Putative Rab5-interact 27.4 5.6E+02 0.012 24.7 9.3 33 568-600 95-127 (129)
137 PF11744 ALMT: Aluminium activ 27.3 6.3E+02 0.014 28.5 11.3 23 452-474 63-85 (406)
138 COG3174 Predicted membrane pro 27.2 3.1E+02 0.0067 30.7 8.8 61 516-584 109-169 (371)
139 PRK13871 conjugal transfer pro 27.2 2.4E+02 0.0051 27.6 7.0 45 545-591 55-99 (135)
140 PRK06266 transcription initiat 26.8 37 0.0008 33.6 1.7 13 268-280 136-148 (178)
141 PF10588 NADH-G_4Fe-4S_3: NADH 26.7 29 0.00062 26.8 0.7 19 178-199 3-21 (41)
142 TIGR02185 Trep_Strep conserved 26.7 6.5E+02 0.014 25.1 10.9 19 503-521 5-23 (189)
143 PRK01862 putative voltage-gate 26.6 9.3E+02 0.02 27.6 12.8 33 431-463 122-154 (574)
144 KOG1924 RhoA GTPase effector D 26.6 34 0.00073 41.4 1.5 12 121-132 621-632 (1102)
145 PRK12895 ubiA prenyltransferas 26.2 5.4E+02 0.012 27.4 10.1 33 448-480 35-68 (286)
146 TIGR03136 malonate_biotin Na+- 26.1 6E+02 0.013 28.8 10.6 93 508-601 238-333 (399)
147 PF11947 DUF3464: Protein of u 26.0 1.5E+02 0.0033 29.2 5.6 46 544-590 73-118 (153)
148 cd01034 EriC_like ClC chloride 25.9 5.5E+02 0.012 28.0 10.4 31 433-463 86-116 (390)
149 PRK12884 ubiA prenyltransferas 25.8 7.3E+02 0.016 25.4 14.9 26 568-593 253-278 (279)
150 TIGR02916 PEP_his_kin putative 25.7 6.6E+02 0.014 29.1 11.5 52 548-603 242-297 (679)
151 PF13248 zf-ribbon_3: zinc-rib 25.7 26 0.00057 24.4 0.3 11 189-199 14-24 (26)
152 COG5178 PRP8 U5 snRNP spliceos 25.7 42 0.00091 42.3 2.1 15 514-528 667-681 (2365)
153 PHA00626 hypothetical protein 25.6 42 0.00092 28.4 1.5 18 192-209 1-19 (59)
154 TIGR00918 2A060602 The Eukaryo 25.5 8.2E+02 0.018 31.3 12.8 20 504-523 1065-1084(1145)
155 COG3872 Predicted metal-depend 25.5 8.5E+02 0.018 26.7 11.2 21 571-591 207-227 (318)
156 PF03812 KdgT: 2-keto-3-deoxyg 25.4 2.3E+02 0.0051 31.0 7.3 89 505-599 137-249 (314)
157 PF14045 YIEGIA: YIEGIA protei 25.1 3.1E+02 0.0068 29.7 8.1 23 471-493 63-85 (285)
158 PRK13387 1,4-dihydroxy-2-napht 25.0 8.8E+02 0.019 26.0 13.5 49 433-481 17-71 (317)
159 TIGR00930 2a30 K-Cl cotranspor 24.9 6.7E+02 0.015 31.2 11.9 37 431-468 96-132 (953)
160 PRK12585 putative monovalent c 24.7 3E+02 0.0066 28.4 7.6 11 587-597 81-91 (197)
161 PF10710 DUF2512: Protein of u 24.6 1.4E+02 0.0031 28.6 5.1 12 550-561 39-50 (136)
162 COG3238 Uncharacterized protei 24.4 4.5E+02 0.0098 26.0 8.4 33 579-611 93-126 (150)
163 PF09925 DUF2157: Predicted me 24.3 6E+02 0.013 23.9 11.2 87 486-581 14-101 (145)
164 PF10131 PTPS_related: 6-pyruv 24.3 1E+03 0.022 28.1 12.7 137 432-598 28-164 (616)
165 TIGR00918 2A060602 The Eukaryo 24.0 3.4E+02 0.0075 34.4 9.3 60 455-523 466-525 (1145)
166 COG0811 TolQ Biopolymer transp 23.6 5.3E+02 0.011 26.2 9.2 34 567-600 160-193 (216)
167 PHA02753 hypothetical protein; 23.6 9.1E+02 0.02 25.7 12.8 24 505-528 191-214 (298)
168 COG3704 VirB6 Type IV secretor 23.5 6.7E+02 0.015 28.4 10.6 46 550-600 234-279 (406)
169 PF08882 Acetone_carb_G: Aceto 23.4 33 0.00071 32.4 0.5 14 186-199 69-82 (112)
170 PRK10582 cytochrome o ubiquino 23.3 6.2E+02 0.013 23.7 9.0 20 572-591 80-99 (109)
171 PRK02983 lysS lysyl-tRNA synth 23.2 7.2E+02 0.016 31.5 11.8 17 427-443 15-31 (1094)
172 PF10225 DUF2215: Uncharacteri 23.2 3.3E+02 0.0072 28.4 7.8 13 570-582 63-75 (249)
173 TIGR00815 sulP high affinity s 23.1 8.7E+02 0.019 27.8 11.7 138 431-599 272-416 (563)
174 PRK10429 melibiose:sodium symp 23.0 1E+03 0.022 26.0 14.6 14 550-563 282-295 (473)
175 PF01927 Mut7-C: Mut7-C RNAse 22.8 81 0.0018 29.9 3.1 16 265-280 121-136 (147)
176 PF04956 TrbC: TrbC/VIRB2 fami 22.7 3.3E+02 0.0071 23.6 6.6 43 545-592 56-98 (99)
177 PF03419 Peptidase_U4: Sporula 22.7 3.9E+02 0.0084 28.0 8.3 8 519-526 50-57 (293)
178 PF02659 DUF204: Domain of unk 22.6 3.7E+02 0.008 22.0 6.5 33 568-600 21-53 (67)
179 PRK14995 methyl viologen resis 22.4 1E+03 0.023 26.0 14.7 48 426-473 17-65 (495)
180 PRK12882 ubiA prenyltransferas 22.2 7.2E+02 0.016 25.6 10.0 130 432-594 17-150 (276)
181 PF12805 FUSC-like: FUSC-like 22.1 3.1E+02 0.0067 28.4 7.4 25 568-592 70-94 (284)
182 PRK15374 pathogenicity island 22.0 1.4E+03 0.03 27.3 13.8 19 510-528 314-332 (593)
183 PF05817 Ribophorin_II: Oligos 22.0 4.8E+02 0.01 31.0 9.6 27 571-597 605-632 (636)
184 PF09991 DUF2232: Predicted me 22.0 7.1E+02 0.015 24.9 9.7 33 554-587 70-102 (290)
185 KOG2504 Monocarboxylate transp 21.9 2.1E+02 0.0046 32.5 6.6 19 586-604 182-200 (509)
186 TIGR01148 mtrC N5-methyltetrah 21.5 8E+02 0.017 26.5 10.1 72 508-589 170-241 (265)
187 PLN03159 cation/H(+) antiporte 21.5 2.5E+02 0.0053 34.1 7.3 9 596-604 187-195 (832)
188 PF11833 DUF3353: Protein of u 21.5 3.6E+02 0.0079 27.3 7.4 34 570-603 136-169 (194)
189 PHA03211 serine/threonine kina 21.5 51 0.0011 36.6 1.6 7 203-209 195-201 (461)
190 PRK03557 zinc transporter ZitB 21.4 9.9E+02 0.021 25.3 16.4 14 431-444 29-42 (312)
191 PF04156 IncA: IncA protein; 21.3 2.5E+02 0.0055 27.1 6.2 34 447-480 33-68 (191)
192 COG2610 GntT H+/gluconate symp 21.2 1.2E+03 0.026 26.8 12.1 36 570-605 289-324 (442)
193 PLN02638 cellulose synthase A 21.1 4.1E+02 0.0089 33.6 9.1 53 550-607 900-952 (1079)
194 KOG3882 Tetraspanin family int 21.0 5.4E+02 0.012 25.6 8.6 49 541-592 56-104 (237)
195 PF01024 Colicin: Colicin pore 21.0 1.8E+02 0.0038 29.7 5.1 21 539-559 136-156 (187)
196 PF13834 DUF4193: Domain of un 21.0 49 0.0011 30.6 1.1 12 267-278 69-80 (99)
197 PRK12869 ubiA protoheme IX far 20.9 9.6E+02 0.021 25.0 14.5 40 434-473 17-60 (279)
198 PF06826 Asp-Al_Ex: Predicted 20.8 2.2E+02 0.0048 28.1 5.7 50 551-603 64-113 (169)
199 KOG3397 Acetyltransferases [Ge 20.8 59 0.0013 33.3 1.7 20 42-61 180-199 (225)
200 PRK10404 hypothetical protein; 20.7 2E+02 0.0043 26.4 5.0 19 502-520 78-97 (101)
201 TIGR01384 TFS_arch transcripti 20.5 1.8E+02 0.0038 25.8 4.5 15 190-204 15-29 (104)
202 PRK12884 ubiA prenyltransferas 20.3 9.4E+02 0.02 24.6 14.7 45 436-480 21-68 (279)
203 PRK01305 arginyl-tRNA-protein 20.3 42 0.0009 35.0 0.6 25 191-215 60-84 (240)
204 TIGR03546 conserved hypothetic 20.3 4.5E+02 0.0099 25.8 7.6 28 498-526 10-37 (154)
205 COG3296 Uncharacterized protei 20.3 3.3E+02 0.0071 26.8 6.4 29 411-441 12-40 (143)
206 COG2807 CynX Cyanate permease 20.2 7E+02 0.015 28.3 9.8 56 539-597 106-161 (395)
207 PF14150 YesK: YesK-like prote 20.1 6.1E+02 0.013 22.8 7.7 22 579-600 57-78 (81)
208 TIGR01398 FlhA flagellar biosy 20.1 3.1E+02 0.0066 33.0 7.5 107 426-553 177-309 (678)
209 COG5134 Uncharacterized conser 20.0 40 0.00086 35.3 0.4 23 265-288 39-61 (272)
210 COG0811 TolQ Biopolymer transp 20.0 2.1E+02 0.0046 28.9 5.6 69 426-496 135-211 (216)
No 1
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=5.6e-39 Score=315.80 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=151.8
Q ss_pred ccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchh----------
Q 007037 417 RLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTR---------- 485 (620)
Q Consensus 417 ~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sEr---------- 485 (620)
+.+|+|++|||+||||+|+||+|+|++|+..++.+|+++||++++||++|||+ +|+|+|+|+|.++.|+
T Consensus 4 ~~~~lr~~V~G~~DGlvs~~alvaG~aga~~~~~~Ill~Gla~l~Aga~SMa~G~yls~~sq~d~~~~~~~~e~~~i~~~ 83 (218)
T cd02432 4 RLNWLRAAVLGANDGIVSVAGLVVGVAAATASSFTILIAGLAGLVAGALSMAAGEYVSVSSQRDTEKADIAKERRELAED 83 (218)
T ss_pred hHhHHHHHHHhccchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999999999999999999999998 8999999999876443
Q ss_pred ---hhhHHHHHHHH---------------------------HhCCc----ccHHHHHHHHHHHHHHhhhhhhHhhhhccC
Q 007037 486 ---TTSKQEDRYRE---------------------------LLGRR----ENFWVHATLVFLSYIIFGLIPPVVYGFSFH 531 (620)
Q Consensus 486 ---EREEl~dIY~e---------------------------eLG~~----~nP~~aALvSfLSFiIGGLIPLLPY~fs~~ 531 (620)
|++|+.++|.. ++|.. .+||++|+++|+||++||++|||||+|..
T Consensus 84 p~~e~~el~~~~~~~G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~~~~~p~~aal~s~~sf~lg~liPllpy~~~~- 162 (218)
T cd02432 84 PEAELEELADIYEERGLSPELARQVADELMAKDALEAHARDELGITEGEYANPWQAALASAISFSVGALLPLLAILLAP- 162 (218)
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 44566667763 34442 48999999999999999999999998742
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 532 GSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 532 ~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
....+++++++++++|+++|++++++++ ++|+|+++||+++|++|++++|++|++|
T Consensus 163 ----~~~~~~~s~~~~~~aL~~~G~~~a~~~~---~~~~~~~l~~~~iG~~aa~vty~iG~l~ 218 (218)
T cd02432 163 ----AAWKVPVTIIATLLALALTGYVSARLGG---ASVLRAILRNVIWGALAMALTYLIGRLF 218 (218)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2357899999999999999999999987 9999999999999999999999999875
No 2
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=6.7e-39 Score=318.27 Aligned_cols=173 Identities=21% Similarity=0.244 Sum_probs=153.6
Q ss_pred hccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchh---------
Q 007037 416 RRLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTR--------- 485 (620)
Q Consensus 416 ~~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sEr--------- 485 (620)
++.+|+|++|||+||||+|+||+|+|++|++.++.+|+++||++++||+||||. +|+|+|+|+|.+++|+
T Consensus 15 ~~~~~lr~~VlG~nDGlvt~falvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~~~~~re~~~i~~ 94 (234)
T cd02433 15 RMSGNLRAAVFGANDGLVSNLALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLEASIPDERRELRK 94 (234)
T ss_pred hhhhHHHHHHHhccchHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 368899999999999999999999999999999999999999999999999998 9999999999876544
Q ss_pred ----hhhHHHHHHHH-----------------------------HhCCc----ccHHHHHHHHHHHHHHhhhhhhHhhhh
Q 007037 486 ----TTSKQEDRYRE-----------------------------LLGRR----ENFWVHATLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 486 ----EREEl~dIY~e-----------------------------eLG~~----~nP~~aALvSfLSFiIGGLIPLLPY~f 528 (620)
|++|+.++|++ ++|+. .+||++|+++|+||++|+++|||||+|
T Consensus 95 ~p~~e~~el~~iy~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~~~~~P~~aAl~sflsF~ig~liPLLPf~~ 174 (234)
T cd02433 95 HPLEEAAELALIYRAKGLDEEEAKRVASQLMNDPEQALDTLAREELGLDPELLGNPWSAAVSSFLLFALGALIPVLPFLF 174 (234)
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667763 34442 589999999999999999999999987
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 529 SFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIK 595 (620)
Q Consensus 529 s~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~ 595 (620)
.. ....++++++++++++|+++|++++++++ ++|+|+++||+++|++|++++|++|++|+
T Consensus 175 ~~----~~~~~~~~s~~~~~~~L~~lG~~~a~~s~---~~~~~~~l~~~~~G~~aa~vsy~iG~l~~ 234 (234)
T cd02433 175 GM----SGLAALVLSVLLVGLALLATGAVTGLLSG---RSPGISALRQLAIGGGAAAVTYLLGLLFG 234 (234)
T ss_pred hc----chhHHHHHHHHHHHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 42 12367899999999999999999999987 99999999999999999999999999873
No 3
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=100.00 E-value=6.5e-38 Score=308.99 Aligned_cols=173 Identities=25% Similarity=0.326 Sum_probs=149.8
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchh------------
Q 007037 419 DILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTR------------ 485 (620)
Q Consensus 419 e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sEr------------ 485 (620)
+|+|++|||++|||+|+||+|+|++|++.++.+|+++|+++++||+||||+ +|+|+|+|+|.+++|+
T Consensus 1 ~~lr~~V~G~~DGlvt~~alvaG~aga~~~~~~ili~Gla~liAga~SMa~GeYls~kse~d~~~~e~~re~~~i~~~pe 80 (225)
T cd02434 1 EYLKSIVFGGLDGIVTIFAIVAGVVGAGLSPFVILIIGFANLLADGISMAAGEYVSTKAERDFLHSEKKREEWEIENYPE 80 (225)
T ss_pred CcHHHHhhcchhhhHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcH
Confidence 589999999999999999999999999999999999999999999999998 8999999999776544
Q ss_pred -hhhHHHHHHHH-----------------------------HhCCc-----ccHHHHHHHHHHHHHHhhhhhhHhhhhcc
Q 007037 486 -TTSKQEDRYRE-----------------------------LLGRR-----ENFWVHATLVFLSYIIFGLIPPVVYGFSF 530 (620)
Q Consensus 486 -EREEl~dIY~e-----------------------------eLG~~-----~nP~~aALvSfLSFiIGGLIPLLPY~fs~ 530 (620)
|++|+.++|+. ++|+. .+||++|+++|+||++||++||+||+|..
T Consensus 81 ~E~~el~~iy~~kG~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~~~~~~~P~~aAl~sflsf~~ggliPLlp~~~~~ 160 (225)
T cd02434 81 GEKSEMVEIYSLKGLSEEVADQVVELLSKYRKLFVDIMMTEELGLIPDDELPSPLKTALVTFLSFLVFGIIPLLPYLLGL 160 (225)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44556667763 34442 48999999999999999999999998743
Q ss_pred CC--CCCcchHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 531 HG--SDNRDFKIAAVGGS-SLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 531 ~~--s~~~d~af~iSIav-SlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
.. .......+++++++ ++++|+++|++++++++ ++|+|+++||+++|++|++++|++|++|
T Consensus 161 ~~~~~~~~~~~~~~s~~~~~~~~L~~~G~~~~~~~~---~~~~~~~l~~~~~G~~aa~~ty~iG~l~ 224 (225)
T cd02434 161 YYYSQKEIDSVFALSILIFVAFTLFLLGSFKSKLYN---GKWIISGIIMLINGAASGGVSFFLGVLF 224 (225)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 10 00113467888888 99999999999999987 9999999999999999999999999886
No 4
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=100.00 E-value=2.9e-37 Score=307.73 Aligned_cols=170 Identities=18% Similarity=0.156 Sum_probs=147.6
Q ss_pred ccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchh----------
Q 007037 417 RLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTR---------- 485 (620)
Q Consensus 417 ~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sEr---------- 485 (620)
..+|||++|||+||||+|+||+|+|++|++. +.+|+++||++++|||||||. +|+|+|+|+|.++.++
T Consensus 18 ~~~~lr~~VlG~nDGlvs~~alvaGvag~~~-~~~vll~Gla~liAgA~SMa~GeYlS~~sq~d~~~~~~~~e~~~i~~~ 96 (241)
T cd02435 18 SPRIVRDIIIGLSDGLTVPFALTAGLSSLGD-TKLVITGGLAELAAGAISMGLGGYLAAKSERDHYQREHKRKQEAVEAS 96 (241)
T ss_pred ccchHHHHHhhcchhhHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhC
Confidence 5889999999999999999999999999875 899999999999999999998 9999999999875433
Q ss_pred ---hhhH-HHHHHHH------------------------------HhCCc----ccHHHHHHHHHHHHHHhhhhhhHhhh
Q 007037 486 ---TTSK-QEDRYRE------------------------------LLGRR----ENFWVHATLVFLSYIIFGLIPPVVYG 527 (620)
Q Consensus 486 ---EREE-l~dIY~e------------------------------eLG~~----~nP~~aALvSfLSFiIGGLIPLLPY~ 527 (620)
|++| +.++|.+ ++|.. .+||++|+++|+||++|++|||+||+
T Consensus 97 ~~~E~~e~l~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~elg~~~~~~~~p~~aAl~s~lsf~lG~liPLlPy~ 176 (241)
T cd02435 97 PSTEQEEIILYDLVQYGLVPLETAASTVTDLRKNPQALVDFLMRFGLGLEEPDTSRALISALTIGLSYFIGGLIPLLPYF 176 (241)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhChhHHHHHHHHHhhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 5555552 34442 47999999999999999999999998
Q ss_pred hccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 528 FSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYV-----KTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 528 fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~i-----rSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
|.. ....+|++++++++++|+++|++++++++ ++++ ++++||+++|++|++++|+++++|
T Consensus 177 ~~~----~~~~a~~~si~l~~~aL~ilG~~~s~~s~---~~~~~~~~~~s~lrml~~G~~aa~vty~l~~~~ 241 (241)
T cd02435 177 FVS----TVGEALLLSVIVTLVALFVFGYVKTWFTG---GWGGAGGGVWGAVQMLVVGGLAAGAAWGLVKLL 241 (241)
T ss_pred Hcc----chhHHHHHHHHHHHHHHHHHHHHHHhhcC---CCccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 742 12368999999999999999999999986 6665 999999999999999999999875
No 5
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=100.00 E-value=2e-36 Score=294.21 Aligned_cols=167 Identities=28% Similarity=0.409 Sum_probs=149.7
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhh------------
Q 007037 420 ILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRT------------ 486 (620)
Q Consensus 420 ~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErE------------ 486 (620)
|+|++|||++||++|+||+|+|+++++.++.+|+++|+++++||++|||+ +|+|+|+|+|.+++|++
T Consensus 1 ~~r~~V~G~~DGlv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SMa~G~yls~~se~~~~~~e~~re~~e~~~~pe~ 80 (213)
T PF01988_consen 1 WLRDAVFGANDGLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISMAVGEYLSVKSERDLYEAEREREEWELENNPEE 80 (213)
T ss_pred ChHHHHhhccchHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHhChHh
Confidence 79999999999999999999999999999999999999999999999998 89999999999976654
Q ss_pred -hhHHHHHHHH----------------------------HhCC----cccHHHHHHHHHHHHHHhhhhhhHhhhhccCCC
Q 007037 487 -TSKQEDRYRE----------------------------LLGR----RENFWVHATLVFLSYIIFGLIPPVVYGFSFHGS 533 (620)
Q Consensus 487 -REEl~dIY~e----------------------------eLG~----~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s 533 (620)
|+|+.++|++ ++|. ..+||++|+++|+||++||++||+||+|.. .
T Consensus 81 e~~el~~iy~~~Gl~~~~a~~i~~~l~~~~~~~~~m~~ee~g~~~~~~~~p~~~al~~~~sf~lg~liPllp~~~~~--~ 158 (213)
T PF01988_consen 81 EKEELVEIYRAKGLSEEDAEEIAEELSKDKDALDFMMREELGLSPEEEESPWKAALATFLSFILGGLIPLLPYFFLP--S 158 (213)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCchHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 4455667775 1222 248999999999999999999999999853 1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 534 DNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 534 ~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~L 593 (620)
...++.+++++++++|+++|++++++++ ++|+|+++||+++|+++++++|++|+|
T Consensus 159 --~~~a~~~s~~~~~~~L~~~G~~~a~~~~---~~~~~~~l~~~~~G~~aa~~~~~iG~L 213 (213)
T PF01988_consen 159 --VSEAFIASIAVTILALFILGYFKARISG---QSWWRSGLEMLLIGLIAAAVTYLIGYL 213 (213)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1268999999999999999999999987 999999999999999999999999975
No 6
>cd02431 Ferritin_CCC1_C CCC1-related domain of ferritin. Ferritin_CCC1_like_C: The proteins of this family contain two domains. This is the C-terminal domain that is closely related to the CCC1, a vacuole transmembrane protein functioning as an iron and manganese transporter. The N-terminal domain is similar to ferritin-like diiron-carboxylate proteins, which are involved in a variety of iron ion related functions, such as iron storage and regulation, mono-oxygenation, and reactive radical production. This family may be unique to certain bacteria and archaea.
Probab=100.00 E-value=1.2e-34 Score=271.32 Aligned_cols=148 Identities=16% Similarity=0.118 Sum_probs=137.6
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHHHHHHHhC
Q 007037 421 LKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQEDRYRELLG 499 (620)
Q Consensus 421 LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~dIY~eeLG 499 (620)
+|++|||++||++|++|+|+|++|+..++..|+++|+++++|+++||+. +|+|+|+|+|.+++
T Consensus 1 ~r~~V~G~~DGlvt~~~~v~G~aga~~~~~~i~~~Gl~~~iA~a~SMa~G~YlS~kse~d~~~~---------------- 64 (149)
T cd02431 1 VGDFVLGLNDALVEITGALAGLTGAINNTILVGLSGLIVGIAAALSMAIGAYLSTKSESGVKES---------------- 64 (149)
T ss_pred CchhhccccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHhc----------------
Confidence 6999999999999999999999999999999999999999999999998 99999999987522
Q ss_pred CcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 007037 500 RRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSI 579 (620)
Q Consensus 500 ~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlI 579 (620)
+||++|+++|+||++|+++||+||++.. ....++.+++++++++|+++|++++++++ ++|+|+++||+++
T Consensus 65 ---~p~~~al~s~~sf~~g~~iPllp~~~~~----~~~~a~~~s~~~~~~~L~~~G~~~~~~s~---~~~~~~~l~~~~~ 134 (149)
T cd02431 65 ---NPVKSALYTGIAYIIGVVIPILPYLLLS----SVYLALALSVTLAVLAILIFNFYISVASG---ISFRKKFIEMAGL 134 (149)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHH
Confidence 7999999999999999999999998742 11368999999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007037 580 GFMTSGLSYVFGDLI 594 (620)
Q Consensus 580 GllAAaiSYlIG~Lf 594 (620)
|++|++++|++|++|
T Consensus 135 G~~aa~~t~~iG~l~ 149 (149)
T cd02431 135 ALGAAFISFLLGYLL 149 (149)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999874
No 7
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=100.00 E-value=1.7e-32 Score=260.57 Aligned_cols=167 Identities=16% Similarity=0.100 Sum_probs=145.4
Q ss_pred hhhhhhhccchhHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhh-----hhHHHH
Q 007037 420 ILKSIVYGGLAESMTSLGVVTSAAATGA-TTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRT-----TSKQED 492 (620)
Q Consensus 420 ~LRsIVyGgnDGLVTsfGVVaGaAGAgs-s~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErE-----REEl~d 492 (620)
.+|++|||++||++|++++|+|+++++. ++.+|+++|+++++|+++||++ +|+++|+|+..+..|.+ .+++..
T Consensus 2 ~~r~~V~G~~DGivs~~~~v~G~~~a~~~~~~~i~~~Gla~~iA~a~Sma~g~yvs~~~~~~~~~~~~~~~~~~~~~~~~ 81 (175)
T cd02437 2 TIRYGIYGLIDGSLSTLGVVFGASLAFDLDPKIIIAAGLGGAFALGISNGLGAAVAEEGSLRGMLEEKEKILLRLEQMLT 81 (175)
T ss_pred chHHHhhccccchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHH
Confidence 6899999999999999999999999988 8999999999999999999999 89999987544332222 222223
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 007037 493 RYRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKT 572 (620)
Q Consensus 493 IY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irS 572 (620)
...++++.+.+|+.+|+++++||++|+++||+||++.. ...++.+++++++++|+++|++++++++ ++|+++
T Consensus 82 ~~~~e~~~~~~~~~~al~sgls~~~G~llPLlp~~~~~-----~~~a~~~si~~~~~~L~~~G~~~~~~~~---~~~~~~ 153 (175)
T cd02437 82 STREELAIRKADLPSGLIQGISTTLGGLLPLLPFLPFD-----LWLAAGIAVAIVLAILFILGLVIGKISK---INVAIS 153 (175)
T ss_pred HHHHHhccccChHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHcC---CChHHH
Confidence 34456788889999999999999999999999998642 2468999999999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007037 573 VLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 573 gLrmLlIGllAAaiSYlIG~Lf 594 (620)
++|++++|+++++++|.+|++|
T Consensus 154 ~~r~~~~g~la~~~t~~vg~l~ 175 (175)
T cd02437 154 FVWAVGMVITGISLVFSVGKLF 175 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999875
No 8
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=100.00 E-value=1.1e-32 Score=261.75 Aligned_cols=160 Identities=14% Similarity=0.155 Sum_probs=137.7
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHH-------H
Q 007037 422 KSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQED-------R 493 (620)
Q Consensus 422 RsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~d-------I 493 (620)
|++|||+||||+|++|+|+|++++ .++.+|+++|+++++|+++||++ +|+++|+|++.+++|.|++++.+ .
T Consensus 1 R~~VlG~~DGils~~giv~G~~~~-~~~~~i~~~Gla~~vA~a~Sma~GeYv~e~ae~~~e~~ele~~~~~~~g~~~~~~ 79 (169)
T TIGR00267 1 RYVVRGTIDGTLSALGVVGGASGS-VDNYVIILAGLGGGVANGMSNAFGAFTAERAEEEREMRELEKSMLMDEGKLDDTI 79 (169)
T ss_pred CceeeccchHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 789999999999999999997555 46669999999999999999999 99999999987655555555433 1
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 007037 494 YRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTV 573 (620)
Q Consensus 494 Y~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSg 573 (620)
|... .+.+||.+|+++++||++++++||+||+|.. ...++.+++++++++|+++|++++++++ ++|+|++
T Consensus 80 ~~~~--~~~~p~~aAl~sgls~~~g~liPllp~~~~~-----~~~a~~~s~~~~~~~L~ilG~~~a~~s~---~~~~~s~ 149 (169)
T TIGR00267 80 IYKQ--ARRRVYMSGFIDGFSTFMGSFVPVLPFLVFD-----RMTATIVTVLLTLIALLVLGVYLGRISR---ENILISS 149 (169)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHcc-----hhHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHH
Confidence 1111 1358999999999999999999999998731 2468999999999999999999999987 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007037 574 LYHLSIGFMTSGLSYVFGD 592 (620)
Q Consensus 574 LrmLlIGllAAaiSYlIG~ 592 (620)
+||+++|++|++++|++|.
T Consensus 150 lr~~~~G~~aa~it~~iG~ 168 (169)
T TIGR00267 150 LKMVVIGLLVAVVSLLIEG 168 (169)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999873
No 9
>KOG4473 consensus Uncharacterized membrane protein [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=261.44 Aligned_cols=175 Identities=16% Similarity=0.182 Sum_probs=152.5
Q ss_pred hhhccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccch--hhhh--
Q 007037 414 EARRLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTST--RTTS-- 488 (620)
Q Consensus 414 e~~~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sE--rERE-- 488 (620)
.-++.+|||++|+|.||||++++++.+|+.+++.+...+|+.|+|+|+|||+|||+ +|+|+++|.|.+.+| +||+
T Consensus 28 ~~~~~~wlra~vlGanDGL~s~~sL~~Gv~a~~advki~l~~GfAglvaGA~SMaiGeyvsv~Sq~D~e~ae~q~erre~ 107 (247)
T KOG4473|consen 28 YFKRAQWLRAAVLGANDGLVSPASLMMGVGAAKADVKIMLLTGFAGLVAGACSMAIGEYVSVKSQYDIEVAEVQMERREF 107 (247)
T ss_pred hHHHHHHHHHHHhccccCcccHHHHHHhhhhccCCeeEeeehhHHHHHhhhHHHhhccceeecchhhHHHHHHHHHHHHh
Confidence 34478899999999999999999999999999999999999999999999999998 899999999999774 3332
Q ss_pred ---------HHHHHHHH---------------------------HhCCc----ccHHHHHHHHHHHHHHhhhhhhHhhhh
Q 007037 489 ---------KQEDRYRE---------------------------LLGRR----ENFWVHATLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 489 ---------El~dIY~e---------------------------eLG~~----~nP~~aALvSfLSFiIGGLIPLLPY~f 528 (620)
|+.+||.. +||+. .+|..+|+.++++|.+||++|||||+|
T Consensus 108 ~a~~~~e~~E~~~Il~g~~~~E~lpvi~alq~~p~~~ldf~~R~elGl~~p~~~~p~qaA~asa~afslGg~vPLl~~~f 187 (247)
T KOG4473|consen 108 YANSNLENDEIADILLGEEEKEELPVIKALQRTPELMLDFIIRYELGLDEPAENRPLQAAAASALAFSLGGIVPLLPAAF 187 (247)
T ss_pred hccchhhhHHHHHHhcCCCchhccchhHHhhhChHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHhccHHhhhHHHh
Confidence 33444431 45554 379999999999999999999999987
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 529 SFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIK 595 (620)
Q Consensus 529 s~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~ 595 (620)
... ....+++++++++++|+.|||.++++++ .+.+|+++|++++|++|++++|++++|++
T Consensus 188 i~~----~~~~~v~~vv~~~~aL~~fG~~ga~lg~---ak~vrs~~r~vv~G~lAmaatf~l~Klig 247 (247)
T KOG4473|consen 188 VKD----YKVRIVVSVVATTFALFMFGYVGAHLGK---AKVVRSSVRVVVGGWLAMAATFGLTKLIG 247 (247)
T ss_pred hhh----hhhhhhhHHHHHHHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 531 2357888999999999999999999988 88999999999999999999999999863
No 10
>cd01059 CCC1_like CCC1-related family of proteins. CCC1_like: This protein family includes the proteins related to CCC1, a yeast vacuole transmembrane protein responsible for the iron and manganese transport from the cytosol into vacuole. It also includes the proteins similar to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation.
Probab=99.96 E-value=2e-29 Score=232.73 Aligned_cols=141 Identities=24% Similarity=0.351 Sum_probs=131.4
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHHHHHHHhC
Q 007037 421 LKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQEDRYRELLG 499 (620)
Q Consensus 421 LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~dIY~eeLG 499 (620)
+|++|||++||++|++++|+|++++..++..|+++|+++++|+++||+. +|+++|+|+|
T Consensus 1 ~r~~v~G~~DGivs~~~~v~G~~~a~~~~~~il~~Gl~~~ia~a~Sma~g~yls~~~e~~-------------------- 60 (143)
T cd01059 1 LRAAVLGANDGLVSTFALVAGVAAAGDSTKAILLAGLAGLVAGAISMAAGEYVSVKSQRD-------------------- 60 (143)
T ss_pred CccceecccchhHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh--------------------
Confidence 6999999999999999999999999999999999999999999999998 9999999986
Q ss_pred CcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 007037 500 RRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGS-SLACIFLLAIGKAHNQKPPNRSYVKTVLYHLS 578 (620)
Q Consensus 500 ~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIav-SlvaLfLLG~~KAkvS~~t~~s~irSgLrmLl 578 (620)
++|+++|+||++|+++||+||++... ...++.+++++ ++++|+++|+++++.++ ++|+++++||++
T Consensus 61 ------~~al~~~~s~~~g~lipllp~~~~~~----~~~a~~~si~~~~~~~l~~~g~~~~~~~~---~~~~~~~~~~~~ 127 (143)
T cd01059 61 ------KAALASGLSFILGGLLPLLPYLLLPA----GSLALAVSVALVVALALFLLGAFVAKLGG---AKKIRAALRMVV 127 (143)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHhCC---CchHHHHHHHHH
Confidence 68999999999999999999987521 13688899998 99999999999999987 999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 007037 579 IGFMTSGLSYVFGDLI 594 (620)
Q Consensus 579 IGllAAaiSYlIG~Lf 594 (620)
+|+++++++|++|+++
T Consensus 128 ~g~~~a~i~~~~g~l~ 143 (143)
T cd01059 128 LGLLAAALTYLLGRLF 143 (143)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999874
No 11
>cd02436 Nodulin-21 Nodulin-21. Nodulin-21: This is a family of proteins that may be unique to certain plants. The family member in soybean is found to be nodule-specific and is abundant during nodule development. The proteins of this family thus may play a role in symbiotic nitrogen fixation.
Probab=99.94 E-value=2e-26 Score=216.67 Aligned_cols=140 Identities=15% Similarity=0.042 Sum_probs=119.1
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchh--hhhHHHHH--
Q 007037 419 DILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTR--TTSKQEDR-- 493 (620)
Q Consensus 419 e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sEr--EREEl~dI-- 493 (620)
+|||++|||+||||||++++|+|+++++.++.+|+++|+++++||++||+. +|+|+++|+|.++.+. ||+|+..=
T Consensus 1 ~~lra~VlGanDGivs~~alv~Gvaga~~~~~~illaGla~lvAga~SMa~GeYvSv~sq~d~e~a~i~~e~~el~rGl~ 80 (152)
T cd02436 1 QWLRAAVLGANDGLVSVASLMLGVGAVCADEHAMLLSGLAGLVAGACPMAIGEFVRVYRQYRRPRAARCLRGRNRARGPA 80 (152)
T ss_pred CcHHHHHhhcchhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHhhHHHHhhcchhhcccccchHHHHHHHHHHHhhcCCC
Confidence 599999999999999999999999999999999999999999999999998 9999999999987654 44444210
Q ss_pred HHHHhCCc----ccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007037 494 YRELLGRR----ENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQK 563 (620)
Q Consensus 494 Y~eeLG~~----~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~ 563 (620)
-+-|||+. .+||.+|+.+++||.+|+++||++++|... ..+. .+++++++++|+++|++.+++++
T Consensus 81 ~~lelgi~~~~~~~P~qAA~aSa~sF~~Ga~lPll~~~fl~p----~~~~-~~~~~~~~~aL~~~G~~~A~~g~ 149 (152)
T cd02436 81 PDSEPEGLRRQAPSPSSAATASALSFAAGALFPLLAAWFVAS----YASR-RVLPPQSSAPAAPPGRSPATVTA 149 (152)
T ss_pred hhhhcCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchh-hHHHHHHHHHHHHHhHHHHHhcC
Confidence 00156664 689999999999999999999999995321 1245 78888999999999999999976
No 12
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=99.82 E-value=1.7e-19 Score=178.61 Aligned_cols=175 Identities=18% Similarity=0.188 Sum_probs=143.7
Q ss_pred hccchhhhhhhccchhHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhh------
Q 007037 416 RRLDILKSIVYGGLAESMTSLGVVTSAAATG-ATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTT------ 487 (620)
Q Consensus 416 ~~~e~LRsIVyGgnDGLVTsfGVVaGaAGAg-ss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErER------ 487 (620)
++.+++|+.|+|.+||++.+..++.|..... .....+++.|+++++.++++|+. +|++.+++.+....+..+
T Consensus 7 ~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~al~mi~ge~~s~~~~~~~~~~~~~~~~~~~~ 86 (229)
T COG1814 7 NRINIFRASVLGANDGLVSTAKLLEGVEAASIAAYLKLLIAGFAGLISGALSMIIGEYLSVSSQLDAELAEIQKERRLLA 86 (229)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHhhhhHHHHHHHHHHHhhhhhHHHHHhhhhhhhHHHHHHHh
Confidence 4688999999999999999999999999887 55677777779999999999998 899988888876543221
Q ss_pred -------hHHHHHHHH---------------------------Hh--CCc--ccHHHHH-HHHHHHHHHhhhhhhHhhhh
Q 007037 488 -------SKQEDRYRE---------------------------LL--GRR--ENFWVHA-TLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 488 -------EEl~dIY~e---------------------------eL--G~~--~nP~~aA-LvSfLSFiIGGLIPLLPY~f 528 (620)
.++..+|.. ++ +.+ ..++.++ +++++||++|+++|++||+|
T Consensus 87 ~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~sg~s~~~G~l~Pllp~~~ 166 (229)
T COG1814 87 LSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLSSRPLLAATLSSGISFIIGALLPLLPFFF 166 (229)
T ss_pred cCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112210 01 111 3678888 79999999999999999998
Q ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 529 SFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKL 597 (620)
Q Consensus 529 s~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~l 597 (620)
.+. ...+|++++++++++|+++|++++++++ .+++++++||++.|+++++++|++|.+++.+
T Consensus 167 ~~~----~~~al~~si~~~~l~L~ilG~~~a~~s~---~~~~~~~lr~v~~gl~aa~lt~~vg~l~~~~ 228 (229)
T COG1814 167 LPD----VLSALIASIILALLALAILGAVLARLSG---ASIAKSILRMVLLGLLAALLTYLVGRLFGIF 228 (229)
T ss_pred Hhh----hHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 642 2246799999999999999999999988 9999999999999999999999999999865
No 13
>COG1814 Uncharacterized membrane protein [Function unknown]
Probab=93.76 E-value=0.5 Score=47.78 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=96.7
Q ss_pred hhccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHH
Q 007037 415 ARRLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIF-AMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQED 492 (620)
Q Consensus 415 ~~~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvIL-IaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~d 492 (620)
.++..+..+..+|..||++..++...|......+..... ..++.....+.++|++ .|++ .+++..
T Consensus 78 ~~~~~~~~~~~~g~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~ 144 (229)
T COG1814 78 IQKERRLLALSLGVADALVEILGALRGESEEEAREVAEQLLQGLIVGVHGRLSMGIGAYLS-------------SRPLLA 144 (229)
T ss_pred hHHHHHHHhcCcchhHHHHHHHHHHcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-------------hhhHHH
Confidence 334567889999999999999999999998877765554 7888888999999998 7885 111111
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhh--hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007037 493 RYRELLGRRENFWVHATLVFLSYIIFGLIPPVVY--GFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYV 570 (620)
Q Consensus 493 IY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY--~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~i 570 (620)
. -+.+++..+++ .+..++|.+.. ..... -..+++++++..+.-++.|.....--. ...+
T Consensus 145 ~----------~l~sg~s~~~G-~l~Pllp~~~~~~~~~al-----~~si~~~~l~L~ilG~~~a~~s~~~~~---~~~l 205 (229)
T COG1814 145 A----------TLSSGISFIIG-ALLPLLPFFFLPDVLSAL-----IASIILALLALAILGAVLARLSGASIA---KSIL 205 (229)
T ss_pred H----------HHHHHHHHHHH-HHHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCcHH---HHHH
Confidence 1 03445555544 34445554432 11100 134455545444444445554443333 6778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 571 KTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 571 rSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
|..+.-++.++++.++..++|.++
T Consensus 206 r~v~~gl~aa~lt~~vg~l~~~~~ 229 (229)
T COG1814 206 RMVLLGLLAALLTYLVGRLFGIFL 229 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 889999999999999999998753
No 14
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=93.40 E-value=1.2 Score=42.96 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 570 VKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 570 irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
+-.++-.+.+|++..++++.+.+++-+++-+
T Consensus 140 ~~~~i~~~glGlll~~~~~~l~k~~~~~~~~ 170 (181)
T PF08006_consen 140 LFFGIGLFGLGLLLIVITFYLTKLFIKLTVR 170 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888877777665443
No 15
>PF10507 DUF2453: Protein of unknown function (DUF2453); InterPro: IPR019537 The function of these transmembrane protein is not known.
Probab=76.38 E-value=8.9 Score=35.91 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccc
Q 007037 431 ESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEG 481 (620)
Q Consensus 431 GLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~ 481 (620)
-|=.++|+..|++ +...++|+|++++..-++. +|++.-++|--.
T Consensus 24 ~Id~~lg~~~giS-------tmAAAalGN~vSDv~Gi~~~~~vE~~~~rlg~ 68 (111)
T PF10507_consen 24 YIDNTLGVTFGIS-------TMAAAALGNLVSDVAGIGLGGYVERLAQRLGL 68 (111)
T ss_pred HHHHHHHHHHhHH-------HHHHHHHhhhhhhhhhhHHHHHHHHHHHHhCC
Confidence 3344556665554 6778999999999999998 899887777544
No 16
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=73.98 E-value=98 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=18.2
Q ss_pred CCcccHHHHHHHHHHHHHHhhhhhhHhhhhc
Q 007037 499 GRRENFWVHATLVFLSYIIFGLIPPVVYGFS 529 (620)
Q Consensus 499 G~~~nP~~aALvSfLSFiIGGLIPLLPY~fs 529 (620)
|.+++.+...+.-.+.+.+..+-|.+|+++.
T Consensus 101 g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~ 131 (189)
T TIGR02185 101 GGYKNKRKVTIAYVLFFLLVAMGPILPIWLF 131 (189)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555666555554444445556677788773
No 17
>COG4709 Predicted membrane protein [Function unknown]
Probab=73.14 E-value=49 Score=33.83 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007037 572 TVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 572 SgLrmLlIGllAAaiSYlIG 591 (620)
+.+...++|+...++.++++
T Consensus 145 ~~i~a~f~~IGs~lLgl~~~ 164 (195)
T COG4709 145 SSISAFFIGIGSLLLGLGLG 164 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 18
>KOG4619 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=5.9 Score=35.98 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhhhhcccccccc
Q 007037 451 NIFAMALANLIGGLFIVAH-NLRELKTDGAEGT 482 (620)
Q Consensus 451 vILIaGLAnLIAGAISMG~-eYLS~KSErD~~~ 482 (620)
+...+.|+|||++.-..|+ +|+++-++|--.+
T Consensus 20 tmaaaalgnlisdiaglgla~yve~~~~rlgi~ 52 (105)
T KOG4619|consen 20 TMAAAALGNLISDIAGLGLAGYVEAAAQRLGIK 52 (105)
T ss_pred HHHHHHHhhHHHHhhcccHHHHHHHHHHHhCCC
Confidence 4556788899999888888 8999988887653
No 19
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=70.54 E-value=6.2 Score=40.66 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 007037 506 VHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSG 585 (620)
Q Consensus 506 ~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAa 585 (620)
+-++...++.+..-+.||-|..+=. ....+|++ +|.++|++.+.. ++|+++.+
T Consensus 113 l~~~~~~~~v~a~~lFPlWP~~~r~-------gv~YlS~~----~lgll~~~~~la-----------ivRlilf~----- 165 (224)
T PF03839_consen 113 LIGALLLVGVIAICLFPLWPRWMRQ-------GVYYLSVG----ALGLLGLFFALA-----------IVRLILFL----- 165 (224)
T ss_pred HHHHHHHHHHHHHHhhhcChHHHhh-------eeehhHHH----HHHHHHHHHHHH-----------HHHHHHHH-----
Confidence 3466677777788889999987621 12244433 444444443322 23333222
Q ss_pred HHHHHH------HHHHHHHHHcCCCCC
Q 007037 586 LSYVFG------DLIKKLAEQLHLFDS 606 (620)
Q Consensus 586 iSYlIG------~Lf~~lL~k~g~~~~ 606 (620)
++|+++ +||-++++..|++|+
T Consensus 166 i~w~~~~g~~~fWlfPNLfeD~Gf~eS 192 (224)
T PF03839_consen 166 ITWFFTGGKHGFWLFPNLFEDVGFFES 192 (224)
T ss_pred HHHHHhcCCCCEEeCCccccccchhhh
Confidence 334443 678889999999885
No 20
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=69.79 E-value=1.2e+02 Score=34.95 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=23.8
Q ss_pred hhhhhhhccchhHHHHHHH---HHHHHhcCC-----ChHHHHHHHHHHHHHHHHHHh
Q 007037 420 ILKSIVYGGLAESMTSLGV---VTSAAATGA-----TTLNIFAMALANLIGGLFIVA 468 (620)
Q Consensus 420 ~LRsIVyGgnDGLVTsfGV---VaGaAGAgs-----s~lvILIaGLAnLIAGAISMG 468 (620)
+..+.+|.. |+++++++ ++|+.|... ++..++++| .-++.-+++|.
T Consensus 209 ~~~~l~y~l--G~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~-~l~v~lgL~~~ 262 (571)
T PRK00293 209 LLLSFVYVQ--GMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLS-ILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHh
Confidence 555667766 77877554 445444332 222222233 34555566764
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=69.66 E-value=1.4e+02 Score=30.78 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~L 593 (620)
+..-+..-+.+.+....++++|++|.+
T Consensus 251 ~~~~~~~~~~~~~~m~~g~~~~~~~~~ 277 (279)
T PRK09573 251 IEGASKASKYLKIIMILGLIAFLIGSL 277 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455677778888888888899988865
No 22
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=66.26 E-value=1.9e+02 Score=30.91 Aligned_cols=174 Identities=12% Similarity=0.070 Sum_probs=79.9
Q ss_pred cchhhhhhhccchhHHHHHHHHHH--HHhcC--CChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHH
Q 007037 418 LDILKSIVYGGLAESMTSLGVVTS--AAATG--ATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQED 492 (620)
Q Consensus 418 ~e~LRsIVyGgnDGLVTsfGVVaG--aAGAg--ss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~d 492 (620)
.+..|.+-.|..=|++.++++-.. ..... .....=++-|+..++|..+-.-. -|+- |. .++-|+++++
T Consensus 35 ~~~~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~-~~------~~~~~~~i~~ 107 (283)
T TIGR00145 35 TRLRGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWML-RM------QRKWRVKIER 107 (283)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHH
Confidence 345777778887888877542222 11111 11213446777778887766554 4554 21 1112334444
Q ss_pred HHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 007037 493 RYRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKT 572 (620)
Q Consensus 493 IY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irS 572 (620)
...+.+.+..+-|--++..|++-.-=|+=-+ -|+..+..+. ....++..+++++++++++|++.-+.+. +=.+|.
T Consensus 108 ~~~~al~~~~~~~al~~l~flaV~REG~EtV-lF~~g~~~~~-~~~~~~gg~~~Gl~~~~~~g~li~~~~~---~i~l~~ 182 (283)
T TIGR00145 108 QLVQALKRKRSGWAIALIAFIAVVREGLETV-LFLAGFQQGS-HATAYIGPAVAGLIVAVVVGVLLYRGGS---RLSLKI 182 (283)
T ss_pred HHHHHHhcCcchhHHHHHHHHHHHHhhhHHH-HhHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHh---hCCHHH
Confidence 4443333222233333334433221111111 1111111111 1123344467778888888888877775 333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007037 573 VLYHLSIGFMTSGLSYVFGDLIKKLAEQLHLFD 605 (620)
Q Consensus 573 gLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~~~ 605 (620)
.++.. ..++...++-++|+.+..+.+ .|+.+
T Consensus 183 FF~~t-~~lL~llAagl~~~gv~~lq~-ag~l~ 213 (283)
T TIGR00145 183 FFILS-SSLLLFIAAGLLGGGNHRFNL-AGGGD 213 (283)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHH-ccCCC
Confidence 44443 223333334444555555533 44434
No 23
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=64.65 E-value=2.3e+02 Score=33.93 Aligned_cols=27 Identities=7% Similarity=-0.164 Sum_probs=10.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhh
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLREL 474 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~ 474 (620)
+...+.+++.+..++.+++.-+ ++++-
T Consensus 200 s~~~~g~l~s~~~lG~iiG~li~G~LsD 227 (742)
T TIGR01299 200 PDSGKGMLGLIVYLGMMVGAFFWGGLAD 227 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444433 45543
No 24
>PF05128 DUF697: Domain of unknown function (DUF697) ; InterPro: IPR021147 Proteins in this entry have no known function.
Probab=61.21 E-value=1.1e+02 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.026 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCC
Q 007037 568 SYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLH-LFDS 606 (620)
Q Consensus 568 s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g-~~~~ 606 (620)
+.....+-.++-|++++.++|.+|+.+..+++..+ |-+.
T Consensus 105 ~~~~~~~g~~~qa~~a~~~T~~iG~~~~~~~~~~~~~~~~ 144 (162)
T PF05128_consen 105 SLAGTVSGAAIQAASAGALTYAIGKAAIEYFENGPSWGEF 144 (162)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 34455566778889999999999999999998877 4443
No 25
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=60.74 E-value=1.8e+02 Score=28.82 Aligned_cols=9 Identities=22% Similarity=0.035 Sum_probs=5.5
Q ss_pred hhhHhhhhc
Q 007037 521 IPPVVYGFS 529 (620)
Q Consensus 521 IPLLPY~fs 529 (620)
-+.+|++|.
T Consensus 120 g~~~p~~~~ 128 (186)
T PF09605_consen 120 GPYLPIWFM 128 (186)
T ss_pred hhHHHHHHh
Confidence 466777663
No 26
>PTZ00207 hypothetical protein; Provisional
Probab=60.65 E-value=3.3e+02 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=21.7
Q ss_pred CCcchhhccchhh-hhhhccchhHHHHHHHHHHHHhc
Q 007037 410 PKASEARRLDILK-SIVYGGLAESMTSLGVVTSAAAT 445 (620)
Q Consensus 410 ~~~~e~~~~e~LR-sIVyGgnDGLVTsfGVVaGaAGA 445 (620)
.+.+|.++|-.+= ++......|..-.+++.++....
T Consensus 19 ~~~~e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~ 55 (591)
T PTZ00207 19 KPINEPRRFALLVLGAFCSICTSFMYAFNLISGAMQA 55 (591)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777764333 33444557777777777766544
No 27
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=58.09 E-value=6.5 Score=44.21 Aligned_cols=16 Identities=38% Similarity=0.854 Sum_probs=6.5
Q ss_pred CCCCCCCCceeeecce
Q 007037 259 DGNLHRKPYIFKCLSC 274 (620)
Q Consensus 259 ~~~~~~~p~vfrClsC 274 (620)
+-+..+.=+||+|.-|
T Consensus 349 ~~e~kqsvyIykC~~s 364 (480)
T KOG2675|consen 349 DAELKQSVYIYKCSNS 364 (480)
T ss_pred eccccceEEEEeccce
Confidence 3333333444444443
No 28
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=57.00 E-value=66 Score=33.34 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=16.2
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHhh
Q 007037 503 NFWVHATLVFLSYIIFGLIPPVVY 526 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLIPLLPY 526 (620)
.-+.++++++++|....+.++-++
T Consensus 250 ~i~~s~ltt~~gf~~L~~s~~~~~ 273 (333)
T PF03176_consen 250 AILLSALTTAIGFGSLLFSPFPPL 273 (333)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHH
Confidence 345678888888877666654444
No 29
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=56.89 E-value=2.6e+02 Score=31.07 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007037 572 TVLYHLSIGFMTSGLSYVFGD 592 (620)
Q Consensus 572 SgLrmLlIGllAAaiSYlIG~ 592 (620)
+-+-+.+.-+++.++-|++..
T Consensus 424 ~p~itt~~D~~g~~~~~~~a~ 444 (449)
T TIGR00400 424 GPLITTIADALTLIIYFNIAK 444 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 30
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=55.53 E-value=1.7e+02 Score=31.42 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007037 432 SMTSLGVVTSAAATGATTLNIFAMALANLIGG 463 (620)
Q Consensus 432 LVTsfGVVaGaAGAgss~lvILIaGLAnLIAG 463 (620)
+.+.+++.+|..++.-.|..-+-+.++..++.
T Consensus 90 l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~ 121 (383)
T cd00400 90 LASALTLGSGGSVGREGPIVQIGAAIGSWLGR 121 (383)
T ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH
Confidence 45566666676666666666555555544443
No 31
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=55.07 E-value=1.3e+02 Score=32.27 Aligned_cols=76 Identities=9% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 007037 507 HATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGL 586 (620)
Q Consensus 507 aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAai 586 (620)
+.-+..+.|+++++--+=||---..+..+++-.+..++...+++++++|+.+..... ..+.+-.+++|++.=.+
T Consensus 163 ~~G~IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~la~e~G~ls~ii~gi~s~~~~~------~~~~~i~iivg~i~W~~ 236 (264)
T PRK01030 163 ATGFIALLFILGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIFGIASLAFLG------LAAAIISIIVGLIGWYY 236 (264)
T ss_pred cccHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc------hhhHHHHHHHHHHHHHH
Confidence 344566778999888888886422223344456677778889999999998876544 23333444555555555
Q ss_pred HH
Q 007037 587 SY 588 (620)
Q Consensus 587 SY 588 (620)
+|
T Consensus 237 ~y 238 (264)
T PRK01030 237 AY 238 (264)
T ss_pred HH
Confidence 55
No 32
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=54.54 E-value=6.9 Score=44.15 Aligned_cols=21 Identities=62% Similarity=1.216 Sum_probs=14.3
Q ss_pred ccccccCCCCCCCCCCCCCCc
Q 007037 39 RLQANKTTAPPPPPPPPPPPA 59 (620)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~ 59 (620)
.-|+..|.+.|.||||||||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (461)
T PLN03132 6 STQAAATAATPQPPPPPPPPE 26 (461)
T ss_pred ccccccccCCCCCcccCCCCc
Confidence 357777777777777666664
No 33
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=53.89 E-value=8.6 Score=30.28 Aligned_cols=22 Identities=14% Similarity=0.582 Sum_probs=17.0
Q ss_pred cccccCCCCCccceeeEEEeeccCCC
Q 007037 189 THDLYCPNCNSCITRRVILVRKKPKI 214 (620)
Q Consensus 189 thdlyCPnC~sCITrrVIL~krkr~~ 214 (620)
.-.+.||+|++ ||+.|+|.+..
T Consensus 17 ~~~irC~~CG~----rIlyK~R~~~~ 38 (44)
T smart00659 17 KDVVRCRECGY----RILYKKRTKRL 38 (44)
T ss_pred CCceECCCCCc----eEEEEeCCCce
Confidence 34589999997 78899887643
No 34
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=53.53 E-value=1.6e+02 Score=28.90 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=18.2
Q ss_pred HHHHHHHHhh-hhh-hhccccccccchhhhhHHHHHHHHHhCCc
Q 007037 460 LIGGLFIVAH-NLR-ELKTDGAEGTSTRTTSKQEDRYRELLGRR 501 (620)
Q Consensus 460 LIAGAISMG~-eYL-S~KSErD~~~sErEREEl~dIY~eeLG~~ 501 (620)
.++++++.++ .=. +.-+|+.. .++||+||++....+.|..
T Consensus 34 Gla~~vA~a~Sma~GeYv~e~ae--~~~e~~ele~~~~~~~g~~ 75 (169)
T TIGR00267 34 GLGGGVANGMSNAFGAFTAERAE--EEREMRELEKSMLMDEGKL 75 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Confidence 4445555554 233 33333322 3356667765444333443
No 35
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.13 E-value=49 Score=36.94 Aligned_cols=87 Identities=20% Similarity=0.136 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchhHHHHHH------
Q 007037 504 FWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQK-PPNRSYVKTVLYH------ 576 (620)
Q Consensus 504 P~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~-~t~~s~irSgLrm------ 576 (620)
-|.++++.++.|+++|++--.-.-|. .++..+++..+..|+++|-++.-+.. .++..++-.++-.
T Consensus 299 ry~Aa~~agi~ylv~GlF~~~~~~l~--------~alP~~li~~lAGLALlg~~~~~l~~A~~~~~~R~aAlvtF~VTaS 370 (402)
T COG3135 299 RYTAALVAGIFYLLAGLFGGALVGLM--------AALPASLIAALAGLALLGTLGNSLQAALKDEREREAALVTFLVTAS 370 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhhhheeehhc
Confidence 37789999999999998643322221 24566667777778888877665532 1334454444332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHH
Q 007037 577 --LSIGFMTSGLSYVFGDLIKKLA 598 (620)
Q Consensus 577 --LlIGllAAaiSYlIG~Lf~~lL 598 (620)
.+.|+.++.-..+.|.+...++
T Consensus 371 G~tl~GIgaafWGLvaG~~~~~L~ 394 (402)
T COG3135 371 GLTLFGIGAAFWGLVAGLLVLALL 394 (402)
T ss_pred cceeecccHHHHHHHHHHHHHHHH
Confidence 3567777777777776665443
No 36
>COG4709 Predicted membrane protein [Function unknown]
Probab=52.36 E-value=1e+02 Score=31.57 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007037 572 TVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 572 SgLrmLlIGllAAaiSYlIG~L 593 (620)
.++-.+++|++...+.|.+-..
T Consensus 152 ~~IGs~lLgl~~~~~if~iv~~ 173 (195)
T COG4709 152 IGIGSLLLGLGLGIVIFAIVKY 173 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444443333
No 37
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=51.86 E-value=2.9e+02 Score=28.53 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhhcc
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLRELKT 476 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~KS 476 (620)
+...++++-++..+..+-++.+ +|.+.+-
T Consensus 33 ~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~i 62 (280)
T TIGR01473 33 NPPLLLLTLLGTTLAAASANAFNMYIDRDI 62 (280)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 4445666667777777888888 6998533
No 38
>PLN02776 prenyltransferase
Probab=51.01 E-value=3.7e+02 Score=29.54 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhhhhccc
Q 007037 450 LNIFAMALANLIGGLFIVAH-NLRELKTD 477 (620)
Q Consensus 450 lvILIaGLAnLIAGAISMG~-eYLS~KSE 477 (620)
..+++.-++..++.+-+|++ .|.+.+-.
T Consensus 29 ~~l~~~~lg~~l~~aaa~~~N~i~DrdiD 57 (341)
T PLN02776 29 PGLGWTCAGTMLCAASANTLNQVFEVKND 57 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhc
Confidence 34555666777888888888 58754443
No 39
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=50.85 E-value=9 Score=43.15 Aligned_cols=13 Identities=38% Similarity=0.353 Sum_probs=8.6
Q ss_pred hhcccccccCCCC
Q 007037 185 KKQSTHDLYCPNC 197 (620)
Q Consensus 185 ~kQ~thdlyCPnC 197 (620)
.||..+-.-|-||
T Consensus 352 ~kqsvyIykC~~s 364 (480)
T KOG2675|consen 352 LKQSVYIYKCSNS 364 (480)
T ss_pred ccceEEEEeccce
Confidence 4676666667666
No 40
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=50.09 E-value=6.7 Score=36.86 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=11.2
Q ss_pred ccccccCCCCCcc
Q 007037 188 STHDLYCPNCNSC 200 (620)
Q Consensus 188 ~thdlyCPnC~sC 200 (620)
++|+.|||.|.|=
T Consensus 83 e~~~~~CP~C~s~ 95 (115)
T COG0375 83 EELDYRCPKCGSI 95 (115)
T ss_pred hhheeECCCCCCC
Confidence 5799999999983
No 41
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=49.93 E-value=2e+02 Score=33.79 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=27.5
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHh
Q 007037 423 SIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVA 468 (620)
Q Consensus 423 sIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG 468 (620)
.-||| .++|..++++.+.-+|++ +.+...|+|-++|+-+.-+
T Consensus 318 gKIlG---~vitaVsvvAAvfTGGAS-LAlAaVGlAL~aaDeI~qa 359 (593)
T PRK15374 318 GKVLG---ALLTIVSVVAAVFTGGAS-LALAAVGLAVMVADEIVKA 359 (593)
T ss_pred HHHHH---HHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHH
Confidence 34555 588999999988877764 5555666665555544433
No 42
>PRK11469 hypothetical protein; Provisional
Probab=49.79 E-value=2.8e+02 Score=27.72 Aligned_cols=47 Identities=13% Similarity=-0.052 Sum_probs=28.9
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh
Q 007037 423 SIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH 469 (620)
Q Consensus 423 sIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~ 469 (620)
..++|.+=++.+.+|...|..-...-+..--..|+.-|+.-++-|-.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988887755422222223444444444455554
No 43
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=48.65 E-value=84 Score=30.96 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 007037 503 NFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFM 582 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGll 582 (620)
-||..+++.+++-++..+++.-+.+ +|..++. .-++-|++. +-.+ ..++....+.+..|++
T Consensus 46 GP~~g~~~a~i~~ll~~l~~~g~~~-----------afpg~~~----~a~laGliy-rk~~---~~~~a~~ge~igt~ii 106 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTLGLGTVL-----------AFPGGMP----GALLAGLLY-RFGR---KHYWASLGEILGTGII 106 (160)
T ss_pred chHHHHHHHHHHHHHHHHhCCCchH-----------HHHHHHH----HHHHHHHHH-HHcc---ccHHHHHHHHHHHHHH
Confidence 4777788877777777665422211 1121111 222334332 2222 4566677777778888
Q ss_pred HHHHHHHHHHH
Q 007037 583 TSGLSYVFGDL 593 (620)
Q Consensus 583 AAaiSYlIG~L 593 (620)
.+.++|-+..+
T Consensus 107 g~~~s~pi~~~ 117 (160)
T TIGR02359 107 GSLLAYPVAAW 117 (160)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 44
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=48.21 E-value=2.8e+02 Score=29.15 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh
Q 007037 431 ESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH 469 (620)
Q Consensus 431 GLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~ 469 (620)
..+..||+|+++... ....++++=++..++-++.|+.
T Consensus 9 ~~il~fa~Vla~~p~--y~~~~filYfiv~~~i~~~~~~ 45 (233)
T PF09973_consen 9 VSILLFAAVLAFFPQ--YYFEVFILYFIVFFGIMIVMGI 45 (233)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 456678888887744 3356666777767777777774
No 45
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=48.17 E-value=1.5e+02 Score=27.16 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007037 540 IAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYV 589 (620)
Q Consensus 540 f~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYl 589 (620)
-..+.++..++.++=|++.++-.+ .+.|+..++-=++--++-.+++++
T Consensus 40 ~~~~~~i~~ls~~~GG~~a~~~~~--~kG~l~G~~~Gl~y~~il~lis~~ 87 (116)
T PF12670_consen 40 PWLVVIIYILSVFIGGFYAGRKAG--SKGWLHGLLVGLLYFLILLLISFL 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHH
Confidence 355567778888889999999887 566665554433333333333333
No 46
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=48.02 E-value=2.1e+02 Score=33.77 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLS 587 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiS 587 (620)
|+|++-++..+......+..++..++.++.++++.+++
T Consensus 190 ~if~~iY~~~r~~~~~~k~~~~~~~~~~~~~ilg~~ls 227 (843)
T PF09586_consen 190 CIFLVIYFLIRYFFKNWKNFFKKILRFIGSSILGVGLS 227 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554420023455566666666555555444
No 47
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=47.64 E-value=3.8e+02 Score=31.05 Aligned_cols=21 Identities=5% Similarity=-0.116 Sum_probs=10.4
Q ss_pred HHHHHHH-HHHHHHHHHHHHhc
Q 007037 542 AVGGSSL-ACIFLLAIGKAHNQ 562 (620)
Q Consensus 542 iSIavSl-vaLfLLG~~KAkvS 562 (620)
+++++++ +-++++|++-+++.
T Consensus 332 ~~~gLG~~~Plll~~~~~~~~l 353 (571)
T PRK00293 332 YLLALGMGLPLILITTFGNKLL 353 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444 33555666655543
No 48
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=47.34 E-value=3.4e+02 Score=28.02 Aligned_cols=28 Identities=11% Similarity=-0.021 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhhhhcc
Q 007037 449 TLNIFAMALANLIGGLFIVAH-NLRELKT 476 (620)
Q Consensus 449 ~lvILIaGLAnLIAGAISMG~-eYLS~KS 476 (620)
....+++.++..++.+.++.+ +|.+.+.
T Consensus 36 ~~~~~l~~l~~~l~~~~~~~iNd~~D~~i 64 (279)
T PRK09573 36 LKGIILAALVVFLVCAGGNVINDIYDIEI 64 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344556666666777777777 6887754
No 49
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=46.69 E-value=32 Score=35.92 Aligned_cols=77 Identities=13% Similarity=-0.067 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 007037 507 HATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGL 586 (620)
Q Consensus 507 aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAai 586 (620)
-++...+..+...+.||-|..+= .....+| +.+|.++|++.+.. .+|+++.+++-.+.
T Consensus 122 ~~~~~~~~ila~~lFPlWP~~~r-------~gv~YlS----~~~lgll~~~~~la-----------ivRlilF~i~~~~~ 179 (232)
T TIGR00869 122 IVILVVSIILALVLFPLWPRFMR-------RGSWYLS----LGALGIIGGFFAVA-----------ILRLILFVLTLIVV 179 (232)
T ss_pred HHHHHHHHHHHHhhcccChHHHh-------HhHHHHH----HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHh
Confidence 35555566677778888888762 1223333 33445555443333 23444333322221
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 007037 587 SYVFGDLIKKLAEQLHLFDS 606 (620)
Q Consensus 587 SYlIG~Lf~~lL~k~g~~~~ 606 (620)
++ ==++|-++++..|++|+
T Consensus 180 g~-~fWlfPNLfeD~Gf~eS 198 (232)
T TIGR00869 180 KP-GIWIFPNLFADVGFLDS 198 (232)
T ss_pred CC-CeeeecchhcccCccee
Confidence 11 11678889999999985
No 50
>PF13347 MFS_2: MFS/sugar transport protein
Probab=46.48 E-value=3.9e+02 Score=28.39 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHHHHhhh-hhhHhhhhccC-CCCC-cchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007037 502 ENFWVHATLVFLSYIIFGL-IPPVVYGFSFH-GSDN-RDFKIAAVGGSSLACIFLLAIGKAHNQK 563 (620)
Q Consensus 502 ~nP~~aALvSfLSFiIGGL-IPLLPY~fs~~-~s~~-~d~af~iSIavSlvaLfLLG~~KAkvS~ 563 (620)
++.+..-+..++.++..++ ...++|++... .... ......+..+.++++..+.+.+.-++.+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk 289 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGK 289 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3444444444444333333 34566665321 1111 1111233344445566666776666654
No 51
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=46.24 E-value=82 Score=28.32 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.0
Q ss_pred HHHHhhhhhhHhhhhccCCC
Q 007037 514 SYIIFGLIPPVVYGFSFHGS 533 (620)
Q Consensus 514 SFiIGGLIPLLPY~fs~~~s 533 (620)
-|++.|++-++-|+|..+++
T Consensus 2 fYLIi~ILi~~~YiF~aPks 21 (81)
T PF11364_consen 2 FYLIIAILILLYYIFMAPKS 21 (81)
T ss_pred hHHHHHHHHHHHHHHHCcHH
Confidence 37888888899998864433
No 52
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.80 E-value=31 Score=34.95 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=46.0
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCcccccCCCCCCcccCCCCCCCCCceeeeccee
Q 007037 205 VILVRKKPKIPKIRHKPRPDHKPESHPAAENSPTNQG--NDTHNVGSNDGLSSVADDGNLHRKPYIFKCLSCF 275 (620)
Q Consensus 205 VIL~krkr~~~~~~~~~~~~~~~~~~p~~~~s~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~p~vfrClsCf 275 (620)
|+..+|+|+.|.+++....+..++-.+.++.+-.-++ .+.++++| +|....-+-++.++-..|+|--|+
T Consensus 68 ~~~~~~~~~sRsaRnR~~~~~id~~s~~~n~s~~~r~d~~s~~~~~s--pp~~~~k~v~~~~~~~~~~CPiCl 138 (187)
T KOG0320|consen 68 VIVDRRRRPSRSARNRSPQDHIDLCSVGSNDSKLPRDDRDSDVTVHS--PPNRRDKDVDPLRKEGTYKCPICL 138 (187)
T ss_pred ceeeccccccccccccCccceeehhccCCcccccccCCCcccccccc--CCCcccccccccccccccCCCcee
Confidence 7888999999999877888888887777644443332 24445555 333333334555666689999994
No 53
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=45.47 E-value=5.8e+02 Score=30.62 Aligned_cols=12 Identities=0% Similarity=-0.288 Sum_probs=5.4
Q ss_pred HHHHHHHHHhcC
Q 007037 552 FLLAIGKAHNQK 563 (620)
Q Consensus 552 fLLG~~KAkvS~ 563 (620)
++.+++.+++..
T Consensus 283 ~~g~~~~g~l~~ 294 (1146)
T PRK08633 283 GIGSLLAGRLSG 294 (1146)
T ss_pred HHHHHHHHHHhC
Confidence 333444455543
No 54
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=44.37 E-value=3.5e+02 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=18.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
+.+++-.++.++.|++..+++++.-..+
T Consensus 265 ~~~~~~~~~~~~~g~l~g~~~l~~P~~l 292 (443)
T COG0038 265 RLPLPPLLRPALGGLLVGALGLLFPEVL 292 (443)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhchhhh
Confidence 4445566777777777777777665554
No 55
>PRK12438 hypothetical protein; Provisional
Probab=44.34 E-value=3.2e+02 Score=34.21 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCC
Q 007037 586 LSYVFGDLIKKLAEQLHLFDSS 607 (620)
Q Consensus 586 iSYlIG~Lf~~lL~k~g~~~~~ 607 (620)
..|++-+.++.+|+.+++.-.+
T Consensus 218 ~~~~ll~A~~ywLdRy~LL~s~ 239 (991)
T PRK12438 218 GAFVLLKAVAYWLDRYELLSSG 239 (991)
T ss_pred HHHHHHHHHHHHHhhhhheecC
Confidence 3445566677788888775543
No 56
>PF04610 TrbL: TrbL/VirB6 plasmid conjugal transfer protein; InterPro: IPR007688 VirB proteins are suggested to act at the bacterial surface and there play an important role in directing t-DNA transfer to plant cells. VirB6 from Agrobacterium tumefaciens is an essential component of the type IV secretion machinery for T pilus formation and genetic transformation of plants. Absence of VirB6 leads to reduced cellular levels of VirB5 and VirB3, which were proposed to assist T pilus formation as minor component(s) or assembly factor(s), respectively. ; GO: 0030255 protein secretion by the type IV secretion system
Probab=44.11 E-value=2.8e+02 Score=26.42 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=21.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQL 601 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~ 601 (620)
.+|++..+-..+.-++.+++..+.-.++...+...
T Consensus 155 ~~wl~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~ 189 (225)
T PF04610_consen 155 DGWLKQLLSFALYLLVIAIVLGLVSSFINSYIAQV 189 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777666666666666655555556666666555
No 57
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=44.05 E-value=1.6e+02 Score=29.38 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 007037 505 WVHATLV 511 (620)
Q Consensus 505 ~~aALvS 511 (620)
|.-++..
T Consensus 79 ~~~~ld~ 85 (206)
T PF06570_consen 79 WLMALDN 85 (206)
T ss_pred HHHHHHH
Confidence 4333333
No 58
>cd02437 CCC1_like_1 CCC1-related protein family. CCC1_like_1: This is a protein family closely related to CCC1, a family of proteins involved in iron and manganese transport. Yeast CCC1 is a vacuole transmembrane protein responsible for the iron and manganese accumulation in vacuole.
Probab=43.71 E-value=3.2e+02 Score=26.67 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHHHHHhhhhhhHhhh--hccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 007037 500 RRENFWVHATLVFLSYIIFGLIPPVVYG--FSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHL 577 (620)
Q Consensus 500 ~~~nP~~aALvSfLSFiIGGLIPLLPY~--fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmL 577 (620)
...+++.+++..++ ..+..++|.++.- ..+. ..+++ .+++++.+-.+.....+... -+..+|..+--+
T Consensus 93 ~~~~al~sgls~~~-G~llPLlp~~~~~~~~a~~------~si~~-~~~~L~~~G~~~~~~~~~~~--~~~~~r~~~~g~ 162 (175)
T cd02437 93 DLPSGLIQGISTTL-GGLLPLLPFLPFDLWLAAG------IAVAI-VLAILFILGLVIGKISKINV--AISFVWAVGMVI 162 (175)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHH------HHHHH-HHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHH
Confidence 34678888886666 4677778876321 2211 23333 34445555444444445543 266777777777
Q ss_pred HHHHHHHHHHHH
Q 007037 578 SIGFMTSGLSYV 589 (620)
Q Consensus 578 lIGllAAaiSYl 589 (620)
+.++++-++..+
T Consensus 163 la~~~t~~vg~l 174 (175)
T cd02437 163 TGISLVFSVGKL 174 (175)
T ss_pred HHHHHHHHHHHh
Confidence 777777666543
No 59
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.51 E-value=2.2e+02 Score=28.36 Aligned_cols=10 Identities=10% Similarity=0.016 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 007037 573 VLYHLSIGFM 582 (620)
Q Consensus 573 gLrmLlIGll 582 (620)
..+.++++++
T Consensus 146 ~~k~~~~~~~ 155 (206)
T PF06570_consen 146 WWKYILISVL 155 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 60
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=42.89 E-value=1.4e+02 Score=31.28 Aligned_cols=25 Identities=12% Similarity=0.394 Sum_probs=13.6
Q ss_pred HhCCcccHHHHHHHHHHHHHHhhhh
Q 007037 497 LLGRRENFWVHATLVFLSYIIFGLI 521 (620)
Q Consensus 497 eLG~~~nP~~aALvSfLSFiIGGLI 521 (620)
++|+.++-..+++=+++--++.|++
T Consensus 30 ~L~l~~~l~~a~~R~~vQL~~vG~v 54 (250)
T PF03649_consen 30 RLGLERDLLIASLRMVVQLLLVGYV 54 (250)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555553
No 61
>PRK10847 hypothetical protein; Provisional
Probab=42.29 E-value=3.7e+02 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcC----CChHH-HHHHHHHHHHHHHHHHhhh
Q 007037 435 SLGVVTSAAATG----ATTLN-IFAMALANLIGGLFIVAHN 470 (620)
Q Consensus 435 sfGVVaGaAGAg----ss~lv-ILIaGLAnLIAGAISMG~e 470 (620)
++-+++|+..+. .+... ++++-+++.+++.+.=.++
T Consensus 53 ~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lG 93 (219)
T PRK10847 53 SLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIG 93 (219)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555432 33333 4444455555555544443
No 62
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.95 E-value=2.5e+02 Score=36.15 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 007037 578 SIGFMTSGLSYVFGDLIKKLAEQLH 602 (620)
Q Consensus 578 lIGllAAaiSYlIG~Lf~~lL~k~g 602 (620)
++.++.+++.++.+.-+-.+++++|
T Consensus 167 LLlllLIGLiLlTglSwlsIleriG 191 (1355)
T PRK10263 167 LLCVWAAGLTLFTGWSWVTIAEKLG 191 (1355)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3334444444444444444444443
No 63
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=41.81 E-value=3e+02 Score=25.78 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007037 538 FKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLS----IGFMTSGLSYVFGDLIKKLAEQLHLFD 605 (620)
Q Consensus 538 ~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLl----IGllAAaiSYlIG~Lf~~lL~k~g~~~ 605 (620)
..+++++++..+.++++|-..-+.-. .+...+-+.+..- +-.+..=+++++..+.+.++..+|.-.
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l~--~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~ 155 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKALA--RRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIEN 155 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34555556666666667765544432 1222333333322 222233344555555555666666654
No 64
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=41.05 E-value=4.3e+02 Score=30.70 Aligned_cols=99 Identities=10% Similarity=-0.037 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHhh---hhccCCCCCcchHHHHHHHHHHH-HHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 007037 505 WVHATLVFLSYIIFGLIPPVVY---GFSFHGSDNRDFKIAAVGGSSLA-CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIG 580 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLPY---~fs~~~s~~~d~af~iSIavSlv-aLfLLG~~KAkvS~~t~~s~irSgLrmLlIG 580 (620)
++.|.+.++.|++.-++-++|= +-.+....-....|.-+++..+. ..++.|+.+++.++ + -+-.+-..++..-|
T Consensus 257 Lr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gIIpiI~l~F~i~GivYG~~sG-~-iks~~Dv~~~M~~~ 334 (502)
T PF03806_consen 257 LRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGIIPIIFLFFLIPGIVYGIASG-T-IKSDKDVVKMMSKG 334 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhHHHHHHHHHHHHHHHHhhhhc-e-ecCHHHHHHHHHHH
Confidence 3456666666655555555553 11111111112345555554433 34567888888887 2 23344455555445
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Q 007037 581 FMTSGLSYVFGDLIKKLAEQLHLFD 605 (620)
Q Consensus 581 llAAaiSYlIG~Lf~~lL~k~g~~~ 605 (620)
+-.++--+++-.+..+++.-|++..
T Consensus 335 m~~m~~yiVL~F~aaQFia~F~~Sn 359 (502)
T PF03806_consen 335 MKSMAPYIVLAFFAAQFIAYFNWSN 359 (502)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 4444333333333345555555443
No 65
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=41.02 E-value=7.2e+02 Score=30.66 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 007037 569 YVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHL 603 (620)
Q Consensus 569 ~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~ 603 (620)
-++..+-+.-+|.-..+.-|.+-+.+.+...++.-
T Consensus 357 s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~ 391 (810)
T TIGR00844 357 SWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTD 391 (810)
T ss_pred CHHHHHHheeeccccHHHHHHHHHHHHhhhcccCc
Confidence 36677777777777777778777777776655553
No 66
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=40.73 E-value=48 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.022 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 546 SSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 546 vSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
+..+.|.+.|++..........+.+..+.-.+.+|.++++++|+++.++
T Consensus 45 ~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~srI~slIi 93 (135)
T PF05628_consen 45 VLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAASRITSLII 93 (135)
T ss_pred HHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHHHHHHHhee
Confidence 3344456666665433221223446667777789999999999988665
No 67
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=39.25 E-value=3.8e+02 Score=31.62 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=35.1
Q ss_pred chhhhhhhccchhHHHH------HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhhhh
Q 007037 419 DILKSIVYGGLAESMTS------LGVVTSAAATGATTLNIFAMALANLIGGLFIVAHNLR 472 (620)
Q Consensus 419 e~LRsIVyGgnDGLVTs------fGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~eYL 472 (620)
....+++.|++-|+|++ +|-+.+.++...|. +.|.+.+.+-+|.||.=|+
T Consensus 289 ~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~----~~g~~~l~al~LGMg~Pll 344 (569)
T COG4232 289 SIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNA----LLGGLALYALGLGMGLPLL 344 (569)
T ss_pred chHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchH----HHHHHHHHHHHHhcccchh
Confidence 38899999999999985 44444444443332 4566778888999997544
No 68
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=38.67 E-value=6e+02 Score=30.87 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHHHHHh
Q 007037 503 NFWVHATLVFLSYIIF 518 (620)
Q Consensus 503 nP~~aALvSfLSFiIG 518 (620)
.-+.++++++++|+-+
T Consensus 298 avl~a~lTT~~GF~Sl 313 (727)
T COG1033 298 AVLIAALTTAAGFLSL 313 (727)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456788888887443
No 69
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=38.49 E-value=3.7e+02 Score=29.76 Aligned_cols=59 Identities=8% Similarity=-0.029 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 539 KIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAE 599 (620)
Q Consensus 539 af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~ 599 (620)
.+.+-+.+.+++|++=|+...+-++. ....+| -.-..+.++...+++++.|.+++.+++
T Consensus 87 ~lYip~~~~L~~Li~R~v~fefR~k~-~~~~~k-~~wd~~~~igs~~~~~~~Gvalg~~~~ 145 (346)
T COG1294 87 GLYLPMILVLFGLIFRGVAFEFRSKI-EDPRWK-KFWDWAFFIGSFLPPLLLGVALGNLLQ 145 (346)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccc-cChhhH-hHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 56777777788888888877766541 223333 334445677777888888888887765
No 70
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=37.76 E-value=2.4e+02 Score=30.26 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 007037 507 HATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHN 561 (620)
Q Consensus 507 aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkv 561 (620)
..-+..+.|+++++--+=||---.-+..+++-.+..++...+++++++|+.+.-.
T Consensus 170 ~~G~IAl~Fi~~~mAIlHPFNACLGPnE~q~RTL~la~~~G~ls~ii~~i~s~~~ 224 (262)
T PF04211_consen 170 NTGYIALLFIIGGMAILHPFNACLGPNESQDRTLTLAVECGFLSMIIFGIVSLDL 224 (262)
T ss_pred ccCHHHHHHHHHHHHhcCccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888864222233444556777777788888888866544
No 71
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=37.46 E-value=6.9e+02 Score=28.73 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=19.9
Q ss_pred chhhhhhhccchhHHHHHHHHHHHH
Q 007037 419 DILKSIVYGGLAESMTSLGVVTSAA 443 (620)
Q Consensus 419 e~LRsIVyGgnDGLVTsfGVVaGaA 443 (620)
.++..+|||++.=++.++|+--.+.
T Consensus 208 ~~~g~~i~G~l~r~Lv~~GLHh~~~ 232 (502)
T TIGR02002 208 PVVAFFIFGFIERSLIPFGLHHIFN 232 (502)
T ss_pred cHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3688889999999998888765554
No 72
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=37.43 E-value=6.9e+02 Score=29.11 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=26.5
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-Hhh
Q 007037 424 IVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFI-VAH 469 (620)
Q Consensus 424 IVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAIS-MG~ 469 (620)
+++|..|-++|.-++-.-.--...++.-.+.-|+||++++.|. |..
T Consensus 258 a~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~p~ 304 (554)
T COG0659 258 ALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGIPA 304 (554)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCccc
Confidence 3455555554443332222112234567888999999999887 554
No 73
>PRK14984 high-affinity gluconate transporter; Provisional
Probab=37.16 E-value=6.8e+02 Score=28.52 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 007037 574 LYHLSIGFMTSGLSY-VFGDLIKKLAEQ 600 (620)
Q Consensus 574 LrmLlIGllAAaiSY-lIG~Lf~~lL~k 600 (620)
-.+++.|++.++.+. +.|.++.+++.+
T Consensus 172 G~~il~Glivaip~~~i~g~~~~~~~~~ 199 (438)
T PRK14984 172 GKTLLYGTILAIPTVILAGPVYARFLKG 199 (438)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 356677777777774 448888888776
No 74
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=37.03 E-value=2.8e+02 Score=26.20 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCCCc
Q 007037 579 IGFMTSGLSYVFGDLIKK-LAEQLHLFDSSLEPNS 612 (620)
Q Consensus 579 IGllAAaiSYlIG~Lf~~-lL~k~g~~~~~~~~~~ 612 (620)
+|...+.+.-++|.++.. +++|||++..+..+.+
T Consensus 88 lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~ 122 (138)
T PF04657_consen 88 LGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFS 122 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCC
Confidence 677777788888988865 5799999988766543
No 75
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=36.17 E-value=5.8e+02 Score=27.45 Aligned_cols=64 Identities=14% Similarity=0.044 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCC
Q 007037 541 AAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFG-DLIKKLAEQLHLFD 605 (620)
Q Consensus 541 ~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG-~Lf~~lL~k~g~~~ 605 (620)
.++.++.++...++|+..-++...-+.+.+|-+--+.+++++. .++|++- ..++++..|+....
T Consensus 119 ~ig~il~~IG~ILlgi~~yrlG~~y~~~~ikvgGIL~ii~~l~-~IG~iL~yigl~~~~~~~~~~~ 183 (285)
T PF06157_consen 119 LIGAILAFIGYILLGIGLYRLGSRYNNGLIKVGGILIIIPILS-FIGYILMYIGLGEVISKLYQPQ 183 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCceehhhHHHHHHHHH-HHHHHHHHhhHHHHHhhccccC
Confidence 4444556666667777666766534456666666666665522 2222222 24567777774433
No 76
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=35.99 E-value=1.2e+02 Score=33.97 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhh-hhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHH----
Q 007037 504 FWVHATLVFLSYIIFGLI-PPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKP-PNRSYVKTVLYHL---- 577 (620)
Q Consensus 504 P~~aALvSfLSFiIGGLI-PLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~-t~~s~irSgLrmL---- 577 (620)
-+.++++.++.|++.|+. ..+..++. .+...++.++..|+++|.+.+-+... ....++-.++-+.
T Consensus 300 R~~a~i~~Gv~yll~glfag~i~~l~~---------~~P~~li~~laGlAll~~~~~~l~~a~~~~~~r~~a~~tflvta 370 (395)
T TIGR00843 300 RWIAAAAAGIFYLLAGLFAGAITALFA---------ALPKELIAALAGLALLGAIAGNIKIALHEDQERDAALIAFLATA 370 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH---------HCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 466799999999999999 77776663 23444455566677777666555321 1244444444333
Q ss_pred ----HHHHHHHHHHHHHHHHH
Q 007037 578 ----SIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 578 ----lIGllAAaiSYlIG~Lf 594 (620)
+.|+.++.-..++|.+.
T Consensus 371 Sg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 371 SGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred hcCCcccccHHHHHHHHHHHH
Confidence 34556666666666443
No 77
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=35.97 E-value=4.7e+02 Score=26.38 Aligned_cols=51 Identities=6% Similarity=-0.047 Sum_probs=30.5
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHhh
Q 007037 419 DILKSIVYGGLAESMTSLGVVTSAAATGA-TTLNIFAMALANLIGGLFIVAH 469 (620)
Q Consensus 419 e~LRsIVyGgnDGLVTsfGVVaGaAGAgs-s~lvILIaGLAnLIAGAISMG~ 469 (620)
.+...+++|..=++.+.+|...|-.-+.. +...--..|..-|+.-++-|-.
T Consensus 29 ~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 29 PFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888876531 1111223344444444444444
No 78
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=35.64 E-value=2.1e+02 Score=28.24 Aligned_cols=73 Identities=8% Similarity=-0.038 Sum_probs=38.7
Q ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhhc---cCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 007037 484 TRTTSKQEDRYRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGFS---FHGSDNRDFKIAAVGGSSLACIFLLAIGKAH 560 (620)
Q Consensus 484 ErEREEl~dIY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~fs---~~~s~~~d~af~iSIavSlvaLfLLG~~KAk 560 (620)
..+|.++.+.|+... ....+..-++|+++-+.|.+=|.+- ..+.....-+=.+|++++++++++-.-+.++
T Consensus 16 ~~DR~eL~~~~q~i~------~~~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k 89 (152)
T PF07954_consen 16 HEDRLELAKDLQSIA------RKSNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGK 89 (152)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHH
Confidence 347888888887532 2345555566666666666655541 1010000011133666666666666666555
Q ss_pred hc
Q 007037 561 NQ 562 (620)
Q Consensus 561 vS 562 (620)
..
T Consensus 90 ~~ 91 (152)
T PF07954_consen 90 YQ 91 (152)
T ss_pred HH
Confidence 43
No 79
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=35.59 E-value=3e+02 Score=28.78 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhhhhhccccccccchhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhh
Q 007037 458 ANLIGGLFIVAHNLRELKTDGAEGTSTRTTSKQEDRYRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 458 AnLIAGAISMG~eYLS~KSErD~~~sErEREEl~dIY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~f 528 (620)
...+-++--||.+|.+.-.+|........|+.+++. ...++--|+...+.-.||++-.+.
T Consensus 168 l~~~~~awll~~ey~d~~~~r~~~~~~~~r~~l~~~-----------r~~~~gfG~~~~l~~~IPilNll~ 227 (251)
T PRK04949 168 LWFLFSAWMMAIQYCDYPFDNHKVSFKDMRAALRQK-----------RGTSLQFGALVSLFTMIPLLNLVI 227 (251)
T ss_pred HHHHHHHHHHHHHHhHhHHHHCCCCHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457888998999888888644322222222211 012344445555667778777664
No 80
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=35.41 E-value=1.9e+02 Score=30.23 Aligned_cols=22 Identities=0% Similarity=-0.213 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 007037 541 AAVGGSSLACIFLLAIGKAHNQ 562 (620)
Q Consensus 541 ~iSIavSlvaLfLLG~~KAkvS 562 (620)
+++.+=+++-|+++|++..++.
T Consensus 32 ~iA~~R~~vQL~~vG~vL~~iF 53 (248)
T TIGR00245 32 LWASIRAIIQLIIVGYVLLYIF 53 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 81
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.28 E-value=2.1e+02 Score=30.61 Aligned_cols=51 Identities=12% Similarity=-0.021 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 538 FKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 538 ~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~L 593 (620)
-.++++..-+++-|+++||+..++.. ..+++-..+ .++++...++|.+.+-
T Consensus 34 k~il~a~~RtvvQLli~GfvL~yIf~--~~~~~~~ll---~v~vm~~~Aa~~~~~r 84 (256)
T COG0390 34 KDILVASIRTVVQLLILGFVLSYIFA--LDNPALTLL---MVLVMLTIAAYNARKR 84 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CCcHHHHHH---HHHHHHHHHHHHHHHH
Confidence 35677888889999999999999976 455655544 4455555556666643
No 82
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=35.14 E-value=6e+02 Score=30.56 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=13.4
Q ss_pred cccccccC--CCCCCCCCCCCCCccccCcccCCCc
Q 007037 38 SRLQANKT--TAPPPPPPPPPPPAAVNGEENGGHG 70 (620)
Q Consensus 38 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (620)
+|.|.+.. .-|.|.+.--+..++-+.||..+|+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (742)
T TIGR01299 47 SRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASS 81 (742)
T ss_pred hhhcccccccCCCCCCCCCCCcccccccccccccc
Confidence 46665522 2222222233333444444444443
No 83
>PF15461 BCD: Beta-carotene 15,15'-dioxygenase
Probab=34.12 E-value=5.6e+02 Score=26.70 Aligned_cols=45 Identities=22% Similarity=0.093 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007037 543 VGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYV 589 (620)
Q Consensus 543 SIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYl 589 (620)
++..++.++.+++...-.+.. .-+.-...++.+.+|+.+..+-..
T Consensus 206 a~~~~~~a~~~~~~l~~~~~~--~~~~~~~~l~~~fi~LaaLTlPHm 250 (259)
T PF15461_consen 206 AAPLTLAAILGLAGLYFLLPN--SLSLEESLLALIFIGLAALTLPHM 250 (259)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--cccchhHHHHHHHHHHHHHHccHH
Confidence 344455555554444444432 223456678888888877655443
No 84
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=34.09 E-value=31 Score=32.65 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=12.8
Q ss_pred eeecce-eeeeeecCcccee
Q 007037 269 FKCLSC-FTVFFPTCNGQVK 287 (620)
Q Consensus 269 frClsC-fs~fip~g~~f~~ 287 (620)
|||-+| ++|-.-.|..+..
T Consensus 54 yrC~~C~~tf~~~~~~~~~~ 73 (129)
T COG3677 54 YKCKSCGSTFTVETGSPLSK 73 (129)
T ss_pred cccCCcCcceeeeccCcccc
Confidence 999999 6665555554443
No 85
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=34.05 E-value=2.8e+02 Score=35.16 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHh
Q 007037 503 NFWVHATLVFLSYIIFGLIPPVV 525 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLIPLLP 525 (620)
+-...+++..++|+++++.|+=+
T Consensus 694 sI~ltslt~~~aF~~g~~s~~Pa 716 (1204)
T TIGR00917 694 SITLASLSESLAFFLGALSKMPA 716 (1204)
T ss_pred HHHHHHHHHHHHHHHHhccCChH
Confidence 45778999999999999888633
No 86
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=33.87 E-value=2.9e+02 Score=29.44 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYV 589 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYl 589 (620)
..|++|++.+.+.+ +-++.+++++++++|+
T Consensus 207 ~ff~lGF~laayl~----------l~~l~iAiig~~~A~i 236 (265)
T TIGR00822 207 PFFYLGFLFAAYTD----------FSLLAFGAVGGAGALL 236 (265)
T ss_pred HHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHH
Confidence 45667777776654 3344455555555554
No 87
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=33.82 E-value=19 Score=30.18 Aligned_cols=12 Identities=42% Similarity=1.220 Sum_probs=9.5
Q ss_pred ccccccCCCCCc
Q 007037 188 STHDLYCPNCNS 199 (620)
Q Consensus 188 ~thdlyCPnC~s 199 (620)
.+.-||||+|+.
T Consensus 25 kNfPlyCpKCK~ 36 (55)
T PF14205_consen 25 KNFPLYCPKCKQ 36 (55)
T ss_pred ccccccCCCCCc
Confidence 356799999974
No 88
>PRK00068 hypothetical protein; Validated
Probab=33.55 E-value=6.2e+02 Score=31.80 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Q 007037 585 GLSYVFGDLIKKLAEQLHLFDSS 607 (620)
Q Consensus 585 aiSYlIG~Lf~~lL~k~g~~~~~ 607 (620)
+..+++.+.++.+|+..++.-++
T Consensus 219 ~~~~~ll~a~~ywL~ry~Ll~s~ 241 (970)
T PRK00068 219 AGLLMLLKAVGYWLDRYNLLYST 241 (970)
T ss_pred HHHHHHHHHHHHHHhhhhheecC
Confidence 34455566677788877775443
No 89
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=33.52 E-value=25 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=13.2
Q ss_pred HHHHhhhccccccc-CCCCC
Q 007037 180 VEGVLKKQSTHDLY-CPNCN 198 (620)
Q Consensus 180 ~E~vl~kQ~thdly-CPnC~ 198 (620)
|++-|+..+.+..| ||||+
T Consensus 97 lk~~l~~e~~~~~Y~Cp~c~ 116 (158)
T TIGR00373 97 LREKLEFETNNMFFICPNMC 116 (158)
T ss_pred HHHHHhhccCCCeEECCCCC
Confidence 44555556667776 99997
No 90
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=33.16 E-value=2.2e+02 Score=32.79 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 007037 569 YVKTVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 569 ~irSgLrmLlIGllAAaiSYlIG 591 (620)
.+|+..-++++|+++..++-+++
T Consensus 465 ~vKGFA~Tl~lGi~~smfta~~~ 487 (506)
T COG0342 465 PVKGFAVTLILGILTSMFTAIPV 487 (506)
T ss_pred CchHHHHHHHHHHHHHhhhhHHH
Confidence 57888888888888877765554
No 91
>PF06054 CoiA: Competence protein CoiA-like family; InterPro: IPR010330 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Many of the members of this family are described as transcription factors. CoiA falls within a competence-specific operon in Streptococcus. CoiA is an uncharacterised protein.
Probab=32.48 E-value=34 Score=37.38 Aligned_cols=31 Identities=39% Similarity=0.832 Sum_probs=22.1
Q ss_pred cccccCCCCCccceeeEEEeeccCCCCCCCCCCCC
Q 007037 189 THDLYCPNCNSCITRRVILVRKKPKIPKIRHKPRP 223 (620)
Q Consensus 189 thdlyCPnC~sCITrrVIL~krkr~~~~~~~~~~~ 223 (620)
...+|||.|++ +||||+-+.+.+-=.|+.+.
T Consensus 28 ~~~~~CP~C~~----~v~lk~G~~k~~HFAH~~~~ 58 (375)
T PF06054_consen 28 KGKYFCPGCGE----PVILKKGKKKIPHFAHKSKS 58 (375)
T ss_pred CCcEECCCCCC----eeEEEEcCcccceeeecCCC
Confidence 78999999974 79998776554433555443
No 92
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=32.42 E-value=4.5e+02 Score=25.42 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhh--hhHh-------hhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 007037 507 HATLVFLSYIIFGLI--PPVV-------YGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHL 577 (620)
Q Consensus 507 aALvSfLSFiIGGLI--PLLP-------Y~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmL 577 (620)
.|..+.+.|++-|++ |++. |++.+ ..-++++..+ +-++.|+.+.+..+ . ++..+++
T Consensus 26 ~g~~s~~~YlllG~~GlPVFagg~gG~~~l~gP------TgGyl~gf~~---~a~i~g~~~~~~~~---~---~~~~~~~ 90 (148)
T PF02632_consen 26 RGFLSVLLYLLLGAIGLPVFAGGSGGLGYLLGP------TGGYLLGFPL---AALIIGLLAERLKR---S---RSFLRLI 90 (148)
T ss_pred HHHHHHHHHHHHHHHCCchhcCCCCchHHHhcC------CChHHHHHHH---HHHHHHHHHHhccc---c---chHHHHH
Confidence 466666666666654 4432 22221 1233444333 33446666655543 1 1566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Q 007037 578 SIGFMTSGLSYVFGDLIKKLAEQLHL 603 (620)
Q Consensus 578 lIGllAAaiSYlIG~Lf~~lL~k~g~ 603 (620)
+..+++.++.|++|.+--.+..+.++
T Consensus 91 ~~~~~g~~iiy~~G~~~l~~~~~~~~ 116 (148)
T PF02632_consen 91 LAMLVGLLIIYIFGIIWLAFVTGMSL 116 (148)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHCCCH
Confidence 77777778888888665555555544
No 93
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.38 E-value=2e+02 Score=30.33 Aligned_cols=51 Identities=10% Similarity=0.251 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHHHHHHHHHHHH
Q 007037 541 AAVGGSSLACIFLLAIGKAHNQKPPNRS----YVKTVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 541 ~iSIavSlvaLfLLG~~KAkvS~~t~~s----~irSgLrmLlIGllAAaiSYlIG 591 (620)
.++-+.+-++|+++|+..+......... .+..++|++++=+++.++.++++
T Consensus 277 ~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~ 331 (385)
T PF03547_consen 277 YLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG 331 (385)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444556678899998887653211111 12377899998888888888877
No 94
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=32.33 E-value=3.2e+02 Score=26.90 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHh
Q 007037 505 WVHATLVFLSYIIFGLIPPVV 525 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLP 525 (620)
+..|+.++++.|++.++|++-
T Consensus 2 f~aGll~~~sPC~lp~lp~~l 22 (211)
T PF02683_consen 2 FLAGLLSSFSPCVLPVLPLYL 22 (211)
T ss_pred hHHHHHHhcCcHHHHHHHHHH
Confidence 457999999999998888843
No 95
>COG1971 Predicted membrane protein [Function unknown]
Probab=32.32 E-value=5.7e+02 Score=26.25 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 554 LAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 554 LG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
.|+..+... -+.+..++-+-++-++-..+.+.+|+-++++++|
T Consensus 124 vG~~~a~lg----v~i~~~av~iG~~T~il~~~G~~IG~~~g~~~g~ 166 (190)
T COG1971 124 VGVGLAFLG----VNILLAAVAIGLITLILSALGAIIGRKLGKFLGK 166 (190)
T ss_pred HhhhHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455444442 3445555544445555556667777777766654
No 96
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=32.09 E-value=14 Score=38.85 Aligned_cols=12 Identities=50% Similarity=1.331 Sum_probs=5.3
Q ss_pred cccccCCCCCcc
Q 007037 189 THDLYCPNCNSC 200 (620)
Q Consensus 189 thdlyCPnC~sC 200 (620)
.+..|||||++=
T Consensus 29 ~~n~yCP~Cg~~ 40 (254)
T PF06044_consen 29 AENMYCPNCGSK 40 (254)
T ss_dssp HHH---TTT--S
T ss_pred HHCCcCCCCCCh
Confidence 456899999985
No 97
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=32.08 E-value=4.4e+02 Score=28.81 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007037 503 NFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQK 563 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~ 563 (620)
......+..|++-++++++-|+-.--..... .....+.++++++++++++|-++..+++.
T Consensus 92 ~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~-~p~~~~~~a~~l~i~~v~~li~fI~~i~~ 151 (371)
T PF10011_consen 92 RVTQVVLGTFIGTFVYSLLVLIAIRSGDYGS-VPRLSVFIALALAILSVVLLIYFIHHIAR 151 (371)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcccccccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777776554432211111 23456777888888888888888888765
No 98
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=31.91 E-value=1.4e+02 Score=30.52 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhhHhhhh
Q 007037 508 ATLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 508 ALvSfLSFiIGGLIPLLPY~f 528 (620)
.+..+++++=.|=+|++..+.
T Consensus 50 ~~~~~L~wL~vGkvPlLI~L~ 70 (202)
T PF07290_consen 50 GFTQILSWLNVGKVPLLIWLV 70 (202)
T ss_pred chHhHHHHhccCccHHHHHHH
Confidence 345567788888888887764
No 99
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=31.29 E-value=1.2e+02 Score=36.89 Aligned_cols=27 Identities=11% Similarity=-0.123 Sum_probs=14.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDLIKK 596 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~Lf~~ 596 (620)
++.|++.++++++|+ .++.+++.++..
T Consensus 96 rr~wrsV~rLl~~~M---~lT~livAL~a~ 122 (810)
T TIGR00844 96 LKHWVSVTMLLVPVM---TSGWLVIALFVW 122 (810)
T ss_pred HHhHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 456667777665444 344444444443
No 100
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.26 E-value=5.4e+02 Score=26.82 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 548 LACIFLLAIGKAHNQKPPN-RSYVKTVLYHLSIGFMTSGLSYVFGDLIK 595 (620)
Q Consensus 548 lvaLfLLG~~KAkvS~~t~-~s~irSgLrmLlIGllAAaiSYlIG~Lf~ 595 (620)
+.++++|-+=...++.... ..+++-.+..+.=.++|.+++++++..+.
T Consensus 54 vwgl~I~~lDR~ivss~~~~~~~~~~~~~~~~R~~lAvliaivIs~pl~ 102 (301)
T PF14362_consen 54 VWGLVIFNLDRFIVSSIRKSDGSRKRLLQALPRLLLAVLIAIVISEPLE 102 (301)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544444443112 22344444444445667777777776664
No 101
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.03 E-value=35 Score=37.72 Aligned_cols=78 Identities=21% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 007037 505 WVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTS 584 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAA 584 (620)
++-+++.++.-+..-|+||-|-.+ +-..+.+|+++..+..++|.+...++ |-++.+
T Consensus 191 ~vl~~~fvl~tlaivLFPLWP~~m-------R~gvyY~sig~~gfl~~IlvLaIvRl-----------------ILF~I~ 246 (372)
T KOG2927|consen 191 QVLGVLFVLVTLAIVLFPLWPRRM-------RQGVYYLSIGAGGFLAFILVLAIVRL-----------------ILFGIT 246 (372)
T ss_pred HHHHHHHHHHHHHHHhcccCcHHH-------hcceeeeecchhHHHHHHHHHHHHHH-----------------HHHHHH
Q ss_pred HHHHH--HH-HHHHHHHHHcCCCCC
Q 007037 585 GLSYV--FG-DLIKKLAEQLHLFDS 606 (620)
Q Consensus 585 aiSYl--IG-~Lf~~lL~k~g~~~~ 606 (620)
.+-|. -| ++|-.+++.-|++++
T Consensus 247 ~il~~g~~g~W~FPNL~eDvGfleS 271 (372)
T KOG2927|consen 247 WILTGGKHGFWLFPNLTEDVGFLES 271 (372)
T ss_pred HHHhCCCCceEeccchhhhhhHHHh
No 102
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=30.99 E-value=6.3e+02 Score=26.31 Aligned_cols=149 Identities=9% Similarity=-0.065 Sum_probs=0.0
Q ss_pred hhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHHHHHHHhC
Q 007037 421 LKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQEDRYRELLG 499 (620)
Q Consensus 421 LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~dIY~eeLG 499 (620)
+-++-.+...+++.++...-=..-.+.++..+-++-++..+.+++.-=+ +|++=|...-. |
T Consensus 6 ~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~------------------G 67 (437)
T TIGR00792 6 FGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRW------------------G 67 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCC------------------C
Q ss_pred CcccHHHHH-HHHHHHHHHhhhhh-------hHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhH
Q 007037 500 RRENFWVHA-TLVFLSYIIFGLIP-------PVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVK 571 (620)
Q Consensus 500 ~~~nP~~aA-LvSfLSFiIGGLIP-------LLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~ir 571 (620)
||+..+.-+ +..++++++....| ++-+++ ..++..++.+++......+....... ..++-..
T Consensus 68 rrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~al~~~~~~~-~~~R~~~ 137 (437)
T TIGR00792 68 KFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYI---------TYILLGLFYSFVNIPYWSLVPAITLD-PRERESL 137 (437)
T ss_pred CcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHH---------HHHHHHHHHHhhcccHhhCcccccCC-HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 572 TVLYHLSIGFMTSGLSYVFGDLIKKL 597 (620)
Q Consensus 572 SgLrmLlIGllAAaiSYlIG~Lf~~l 597 (620)
.++++....+..++++.+.+.++..+
T Consensus 138 ~~~~~~~~~~g~~l~~~~~~~l~~~~ 163 (437)
T TIGR00792 138 STFRRFGATLGGLLVAVIVLPLVSYF 163 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
No 103
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=30.91 E-value=6.2e+02 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccc
Q 007037 433 MTSLGVVTSAAAT----GATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEG 481 (620)
Q Consensus 433 VTsfGVVaGaAGA----gss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~ 481 (620)
.+.+.++.|.+.+ ..+....++.-++.++.-+.++.+ +|.+.+...|..
T Consensus 17 ~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~ 70 (293)
T PRK06080 17 AAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTE 70 (293)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcc
Confidence 3444555554433 234444555555666666667777 799988766653
No 104
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=30.79 E-value=1.5e+02 Score=24.63 Aligned_cols=40 Identities=3% Similarity=0.022 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 007037 548 LACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSY 588 (620)
Q Consensus 548 lvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSY 588 (620)
++...++|+..+-+.+ ..-++..+++-.+++|++++.+..
T Consensus 11 ~il~~vvgyI~ssL~~-~~~n~~~~~Ii~vi~~i~~~~~~~ 50 (57)
T PF11151_consen 11 FILGEVVGYIGSSLTG-VTYNFTTAAIIAVIFGIIVANIIA 50 (57)
T ss_pred HHHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666665 345566666555555555555444
No 105
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=30.72 E-value=17 Score=39.20 Aligned_cols=9 Identities=100% Similarity=2.527 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 007037 49 PPPPPPPPP 57 (620)
Q Consensus 49 ~~~~~~~~~ 57 (620)
|||||||||
T Consensus 234 pPPppPpPP 242 (312)
T PF01213_consen 234 PPPPPPPPP 242 (312)
T ss_dssp ---------
T ss_pred CCCCCCCcc
Confidence 333333333
No 106
>PRK06041 flagellar assembly protein J; Reviewed
Probab=30.64 E-value=9.2e+02 Score=28.09 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLA 598 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL 598 (620)
.+.++.-+.++.-+ +.++..+..+.+++-++++++.|+.-.+.+.++
T Consensus 505 i~~~~sgl~i~~~~--gG~~~~gl~~~~il~~i~~i~~~~~~~~v~~~~ 551 (553)
T PRK06041 505 ILSLLSALAIKIVD--GGHKYNSLFHFVIMLWISGLVMYVTPPLVGSLL 551 (553)
T ss_pred HHHHHHHHHHHHhC--CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444433 355555556666666666666666666666655
No 107
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=30.53 E-value=3.5e+02 Score=32.26 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=46.2
Q ss_pred HHHHHHHH-HHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHH
Q 007037 508 ATLVFLSY-IIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGL 586 (620)
Q Consensus 508 ALvSfLSF-iIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAai 586 (620)
|++.=++| ++-|+.|.+.++|.... +.++++| |.+ -++..+.+.....+.- ..+|.+.+-.++||++=.++
T Consensus 531 ~l~gN~~fG~lLG~t~~iG~~~GLPL-DIRHVtf--Ssa--nlg~a~~~lg~~~l~~---~~f~~a~~gV~lIG~~Nl~V 602 (643)
T PF10136_consen 531 GLAGNFSFGFLLGMTPAIGYFFGLPL-DIRHVTF--SSA--NLGYAAVSLGFDVLGW---PAFWWALAGVLLIGFVNLIV 602 (643)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcCCCc-chhhhhH--hHh--HHHHHHHhCChhhccH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444433 34577888888886433 2344433 222 2333333333222222 55689999999999999999
Q ss_pred HHHHHHHH
Q 007037 587 SYVFGDLI 594 (620)
Q Consensus 587 SYlIG~Lf 594 (620)
||.+...+
T Consensus 603 SF~LAl~v 610 (643)
T PF10136_consen 603 SFSLALWV 610 (643)
T ss_pred HHHHHHHH
Confidence 99876543
No 108
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.22 E-value=6.1e+02 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.4
Q ss_pred ccchhhhhhhccchhHHHHH
Q 007037 417 RLDILKSIVYGGLAESMTSL 436 (620)
Q Consensus 417 ~~e~LRsIVyGgnDGLVTsf 436 (620)
-++++.-++.|+.=|-+..+
T Consensus 8 ~~~~~~~illg~~iGg~~G~ 27 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFIGF 27 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877766444
No 109
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=30.19 E-value=66 Score=38.43 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=28.5
Q ss_pred hhhccchhHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHH
Q 007037 424 IVYGGLAESMTSLGVVTSAAAT---GATTLNIFAMALANLIGGLFIV 467 (620)
Q Consensus 424 IVyGgnDGLVTsfGVVaGaAGA---gss~lvILIaGLAnLIAGAISM 467 (620)
.+.|+ |+-++.|++.|+.-+ ...+..+-+.||++|+||.|-=
T Consensus 191 ~~gG~--~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~ 235 (764)
T TIGR02865 191 YIGGS--GAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKE 235 (764)
T ss_pred HhcCc--hHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhcc
Confidence 34455 667777777777643 3345677888888888887743
No 110
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=30.18 E-value=4.3e+02 Score=25.09 Aligned_cols=79 Identities=8% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHHHHHH
Q 007037 512 FLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSY-VKTVLYHLSIGFMTSGLSYVF 590 (620)
Q Consensus 512 fLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~-irSgLrmLlIGllAAaiSYlI 590 (620)
.++|++--++=++||.......-....++++.++++++-+.+==++.=+....+...| ....+-.+++-+++.+-+|++
T Consensus 21 ~iGFvLsIiLT~ipF~~vm~~~~~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wv 100 (111)
T COG3125 21 LIGFVLSIILTLIPFWVVMTGALSSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWV 100 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHhcccCCcccceehHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667778887642222223445555555555554443232224433122333 233344444444444445544
No 111
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=29.90 E-value=5.4e+02 Score=25.17 Aligned_cols=33 Identities=12% Similarity=-0.005 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhhcccccc
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLRELKTDGAE 480 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~ 480 (620)
+....+...++.++.-+.++.. +|.+.+.+++.
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 21 NWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhChhhhhcCccc
Confidence 3444444555555555555556 68888888875
No 112
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=29.77 E-value=4.5e+02 Score=27.77 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhh
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLREL 474 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~ 474 (620)
+...++++.++..++.+.+|++ +|.+-
T Consensus 45 ~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr 72 (291)
T PRK12874 45 GFKLLILGILAAVSARNFAMAFNRLVDR 72 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455666667777777777888 69875
No 113
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.45 E-value=5.7e+02 Score=30.40 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 007037 506 VHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSG 585 (620)
Q Consensus 506 ~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAa 585 (620)
..|+..+++-.++-++|.+-++..... .+..-.....+++.++..|.+.+..-. ..-||.-+|--..-.--.+
T Consensus 141 sraI~~vl~~~V~~i~p~~~~i~~v~~----~l~~~~Ga~~~li~~~~v~~Y~a~Ti~---~t~~Rn~fR~~~N~Adn~a 213 (591)
T KOG0057|consen 141 SRAISFVLSAMVFNIIPTLFEIALVSG----ILYYKFGAAFALITLGTVGAYAAFTIV---VTRWRNRFRKAMNNADNSA 213 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHHHHHHhheeEEe---ehhHHHHHHHHHHhhhhHH
Confidence 348899999999999999888654211 111222334445556666666655544 4456666665555444444
Q ss_pred HHHHHHHHH
Q 007037 586 LSYVFGDLI 594 (620)
Q Consensus 586 iSYlIG~Lf 594 (620)
..-++..|+
T Consensus 214 s~~~~dsL~ 222 (591)
T KOG0057|consen 214 SRRAYDSLI 222 (591)
T ss_pred HHHHHHHHh
Confidence 444444333
No 114
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=29.45 E-value=6.9e+02 Score=26.27 Aligned_cols=28 Identities=14% Similarity=-0.066 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhhc
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLRELK 475 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~K 475 (620)
+....+++-++..++-+-+|.+ +|.+.+
T Consensus 42 ~~~~~~l~~l~~~l~~aa~~~iNd~~D~~ 70 (296)
T PRK04375 42 PLLLLLLTLLGIALVAGAAGALNNYIDRD 70 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3444555666667777777888 698843
No 115
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=29.44 E-value=7.9e+02 Score=27.76 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=69.8
Q ss_pred ccchhhhhhhccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhhhHHHHHHHH
Q 007037 417 RLDILKSIVYGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAHNLRELKTDGAEGTSTRTTSKQEDRYRE 496 (620)
Q Consensus 417 ~~e~LRsIVyGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~eYLS~KSErD~~~sErEREEl~dIY~e 496 (620)
..+.+-+.|||..-=+.+.||.++-..|-. -..|+.+.++.+++-+. - - +.
T Consensus 301 ~a~~i~s~vy~Isav~spvfg~i~Dk~G~n--~~wv~~a~~~tl~~H~~--l-~-----------------------Ft- 351 (459)
T KOG4686|consen 301 SAGNILSTVYGISAVLSPVFGAISDKYGFN--LWWVASACILTLLGHSG--L-F-----------------------FT- 351 (459)
T ss_pred hccchhhhhhhhhhhhhhhHHHhHhhhcce--ehhHHHHHHHHHHHhhh--H-H-----------------------hh-
Confidence 345677888887777777777777666553 22333333333322110 0 0 00
Q ss_pred HhCCcccHHHHHHHHHHHHHHhh--hhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 007037 497 LLGRRENFWVHATLVFLSYIIFG--LIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVL 574 (620)
Q Consensus 497 eLG~~~nP~~aALvSfLSFiIGG--LIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgL 574 (620)
.-+||.++..+++||-+.+ +.|+++++.. -.+.+..+.|.-+|- -+.|++.-++.+.+.. ...++..-=+
T Consensus 352 ----~lsPy~~m~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIq--NLgla~i~Iiag~i~d-~~g~y~~le~ 423 (459)
T KOG4686|consen 352 ----FLSPYTSMTFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQ--NLGLAFIPIIAGFIAD-GDGSYDNLEA 423 (459)
T ss_pred ----hccHHHHHHHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHH--hhhhhHHhhhhheeec-CCCchhhHHH
Confidence 1389999999999997655 6899998752 222223334444332 3445555555555543 2233443333
Q ss_pred HHHHHHHHH
Q 007037 575 YHLSIGFMT 583 (620)
Q Consensus 575 rmLlIGllA 583 (620)
..+++|.+|
T Consensus 424 ffl~~~~~a 432 (459)
T KOG4686|consen 424 FFLIIGLMA 432 (459)
T ss_pred HHHHHHHHH
Confidence 344444443
No 116
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=29.25 E-value=4.9e+02 Score=24.47 Aligned_cols=32 Identities=16% Similarity=-0.019 Sum_probs=20.3
Q ss_pred HHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhh
Q 007037 494 YRELLGRRENFWVHATLVFLSYIIFGLIPPVVY 526 (620)
Q Consensus 494 Y~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY 526 (620)
|.+.+..+.+|-.-|...+++.+++ ++|++++
T Consensus 9 ~~~~l~~~~~p~~iA~g~AiG~fig-~~P~~g~ 40 (154)
T PF09835_consen 9 LLRLLRWGGSPHSIALGFAIGVFIG-FLPIFGL 40 (154)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHH-HHhcchH
Confidence 3433444567877777777775554 7787554
No 117
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=29.14 E-value=24 Score=24.31 Aligned_cols=7 Identities=71% Similarity=2.076 Sum_probs=5.0
Q ss_pred cCCCCCc
Q 007037 193 YCPNCNS 199 (620)
Q Consensus 193 yCPnC~s 199 (620)
|||||+.
T Consensus 1 ~Cp~CG~ 7 (23)
T PF13240_consen 1 YCPNCGA 7 (23)
T ss_pred CCcccCC
Confidence 6777764
No 118
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=28.95 E-value=42 Score=27.47 Aligned_cols=24 Identities=29% Similarity=0.699 Sum_probs=19.2
Q ss_pred hcccccccCCCCCccceeeEEEeeccCC
Q 007037 186 KQSTHDLYCPNCNSCITRRVILVRKKPK 213 (620)
Q Consensus 186 kQ~thdlyCPnC~sCITrrVIL~krkr~ 213 (620)
-|++-..-||.|++ |+++|-|.+.
T Consensus 19 ~~~~~~irCp~Cg~----rIl~K~R~~~ 42 (49)
T COG1996 19 DQETRGIRCPYCGS----RILVKERPKV 42 (49)
T ss_pred hhccCceeCCCCCc----EEEEeccCCc
Confidence 46778899999998 6888877654
No 119
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=28.75 E-value=7.3e+02 Score=26.38 Aligned_cols=13 Identities=23% Similarity=0.059 Sum_probs=7.2
Q ss_pred hhhhhhhccchhH
Q 007037 420 ILKSIVYGGLAES 432 (620)
Q Consensus 420 ~LRsIVyGgnDGL 432 (620)
++..++.|..-|.
T Consensus 160 ~~g~i~vg~~~g~ 172 (314)
T PRK07566 160 WLGNYAVGLSYEG 172 (314)
T ss_pred chhhHHHHHHHHH
Confidence 3556666665544
No 120
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=28.70 E-value=4.1e+02 Score=31.62 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHHHhhhhhhHh
Q 007037 503 NFWVHATLVFLSYIIFGLIPPVV 525 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLIPLLP 525 (620)
+-....++..++|.+|.+.|+-.
T Consensus 326 SitiTslT~~~aF~ig~~t~~pa 348 (798)
T PF02460_consen 326 SITITSLTNALAFAIGAITPIPA 348 (798)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHH
Confidence 44567899999999998877543
No 121
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=28.58 E-value=6.7e+02 Score=25.84 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~L 593 (620)
+.+.+..-+.+-.....+++++++|.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (277)
T PRK12883 249 RETAHKGQKLLKIAIFLAVISFLLGAL 275 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555556666777777788887764
No 122
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=28.48 E-value=2.9e+02 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 007037 539 KIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSG 585 (620)
Q Consensus 539 af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAa 585 (620)
++..+++.+.+..+.++++..... .+-+..++.+.|.++|++.+.
T Consensus 116 ~i~~af~~t~~~F~~ls~~g~~tk--~Dls~l~~~l~~aligLiias 160 (233)
T COG0670 116 AIAAAFGITALVFGALSLYGYTTK--RDLSSLGSFLFMALIGLIIAS 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHH
Confidence 344444555544444544443333 356777788888877776554
No 123
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.47 E-value=2.7e+02 Score=26.30 Aligned_cols=48 Identities=15% Similarity=-0.039 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007037 537 DFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYV 589 (620)
Q Consensus 537 d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYl 589 (620)
...+++=+++++++.|++|++.+.... .++.-..|.+ +|++++++..+
T Consensus 78 qls~v~Nilvsv~~~~~~~~~~~~~~~----~~~~~~~Rvl-lgl~~al~vlv 125 (142)
T PF11712_consen 78 QLSTVFNILVSVFAVFFAGWYWAGYSF----GGWSFPYRVL-LGLFGALLVLV 125 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHH-HHHHHHHHHHH
Confidence 345667777788888888885555421 1234444444 55555544443
No 124
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=28.42 E-value=7.6e+02 Score=26.42 Aligned_cols=39 Identities=10% Similarity=-0.060 Sum_probs=19.0
Q ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHhh-hhhh
Q 007037 435 SLGVVTSAAAT---GATTLNIFAMALANLIGGLFIVAH-NLRE 473 (620)
Q Consensus 435 sfGVVaGaAGA---gss~lvILIaGLAnLIAGAISMG~-eYLS 473 (620)
.+.++.|..-+ ..+...++++-++..++.+-++.+ +|.+
T Consensus 29 ~~~~~~G~~la~~~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D 71 (306)
T PRK13362 29 VISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCID 71 (306)
T ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 34445555432 223333333334444555566666 6887
No 125
>PRK11660 putative transporter; Provisional
Probab=28.39 E-value=5.9e+02 Score=29.25 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhhhccchhHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhhhHHHHHHHHHhCCc
Q 007037 423 SIVYGGLAESMTS-LGVVTSAAATGATTLNIFAMALANLIGGLFIVAHNLRELKTDGAEGTSTRTTSKQEDRYRELLGRR 501 (620)
Q Consensus 423 sIVyGgnDGLVTs-fGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~eYLS~KSErD~~~sErEREEl~dIY~eeLG~~ 501 (620)
+.+||+.-.+++. .+.++.+.++......+-.+.++.+++|.+-+.++++ ++|+-
T Consensus 72 yal~Gss~~~~~Gp~a~~~~~~~~~~~~~~~~~~~~~~~l~Gii~~l~gll------------------------rlG~l 127 (568)
T PRK11660 72 IALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLMSGIILILMGLA------------------------RLGRL 127 (568)
T ss_pred HHHhcCCCCcccChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------------------------hhhHH
Q ss_pred ----ccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHH--------------HHHHHHHHHHHHHHHHHHHHhcC
Q 007037 502 ----ENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKI--------------AAVGGSSLACIFLLAIGKAHNQK 563 (620)
Q Consensus 502 ----~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af--------------~iSIavSlvaLfLLG~~KAkvS~ 563 (620)
..|++.|++++++.+++.. =++.++...........+ ..+.++++++++++=+.+-...+
T Consensus 128 ~~fip~pVi~Gf~~g~al~I~~~--Ql~~~lG~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~lll~~~~~~~~ 205 (568)
T PRK11660 128 IEYIPLSVTLGFTSGIGIVIATL--QIKDFFGLQMAHVPEHYLEKVGALFQALPTINWGDALIGIVTLGVLILWPRLKIR 205 (568)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHH--HHHHhcCCCCCCCCccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhhccc
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH
Q 007037 564 PPNRSYVKTVLYHLSIGFMTSGL 586 (620)
Q Consensus 564 ~t~~s~irSgLrmLlIGllAAai 586 (620)
+...+-.+++|.+.+.+
T Consensus 206 ------iP~~li~iiv~t~~~~~ 222 (568)
T PRK11660 206 ------LPGHLPALLAGTAVMGV 222 (568)
T ss_pred ------CchHHHHHHHHHHHHHH
No 126
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=28.26 E-value=8.1e+02 Score=26.69 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007037 432 SMTSLGVVTSAAATGATTLNIFAMALANLIGG 463 (620)
Q Consensus 432 LVTsfGVVaGaAGAgss~lvILIaGLAnLIAG 463 (620)
+.+.+++.+|.+++--.|..-+-++++..++.
T Consensus 91 ~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~ 122 (402)
T cd01031 91 VGGVLALGSGLSLGREGPSVQIGAAIGQGVSK 122 (402)
T ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH
Confidence 34566666677777677777766776666554
No 127
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=28.21 E-value=18 Score=36.90 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=9.5
Q ss_pred eeeecceeeee
Q 007037 268 IFKCLSCFTVF 278 (620)
Q Consensus 268 vfrClsCfs~f 278 (620)
..||..|-+++
T Consensus 30 lvrC~eCG~V~ 40 (201)
T COG1326 30 LVRCEECGTVH 40 (201)
T ss_pred EEEccCCCcEe
Confidence 58999998877
No 128
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=28.21 E-value=2.2e+02 Score=35.37 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=20.2
Q ss_pred HhCCcccHHHHHHHHHHHHHHhhhhhh
Q 007037 497 LLGRRENFWVHATLVFLSYIIFGLIPP 523 (620)
Q Consensus 497 eLG~~~nP~~aALvSfLSFiIGGLIPL 523 (620)
+-|. +.+..++...+||+.+++||+
T Consensus 512 ~tG~--Svl~tsinni~aF~~aallPI 536 (1143)
T KOG1935|consen 512 ETGM--SVLLTSINNILAFLMAALLPI 536 (1143)
T ss_pred HhCc--chhHHHhhhHHHHHHHhhcCc
Confidence 3454 667788999999999999986
No 129
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=28.09 E-value=7.5e+02 Score=30.30 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 007037 588 YVFGDLIKKLAEQLHLFD 605 (620)
Q Consensus 588 YlIG~Lf~~lL~k~g~~~ 605 (620)
+++...++.+|+.+++.-
T Consensus 210 ~~l~~a~~y~L~ry~Ll~ 227 (774)
T PF03699_consen 210 FFLLKAVGYWLDRYELLY 227 (774)
T ss_pred HHHHHHHHHHHHHHhHee
Confidence 344445556666666543
No 130
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=28.04 E-value=3.7e+02 Score=28.59 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYV 589 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYl 589 (620)
..|++|++.+.+.+ +-++.+++++.+++|+
T Consensus 208 ~ff~lGFvl~ayl~----------l~~l~iAiig~~iA~i 237 (262)
T PRK15065 208 PFFYLGFVLAAFTN----------LNLIALGVIGVVLALI 237 (262)
T ss_pred HHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHH
Confidence 45667777766654 3345555555555554
No 131
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=27.84 E-value=1.1e+03 Score=32.49 Aligned_cols=92 Identities=14% Similarity=0.225 Sum_probs=43.9
Q ss_pred CCcc-cHHH-HHHHHHHHHHHhhhhhhHhhhhccCC---CCCcch-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 007037 499 GRRE-NFWV-HATLVFLSYIIFGLIPPVVYGFSFHG---SDNRDF-KIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKT 572 (620)
Q Consensus 499 G~~~-nP~~-aALvSfLSFiIGGLIPLLPY~fs~~~---s~~~d~-af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irS 572 (620)
|.+. ..|. +-++-++.|++..++-++.+.+ +.. ....+. ++++.+.+-.++.+.+.|+.+.+.......+..-
T Consensus 1717 Gv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~-f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~~~~A~~~~ 1795 (2272)
T TIGR01257 1717 GVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIG-FQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDVPSTAYVAL 1795 (2272)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHH
Confidence 5542 2343 3556666666666655555432 110 001111 1222222223445556666666654233344444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007037 573 VLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 573 gLrmLlIGllAAaiSYlIG 591 (620)
.+-.+++|++..++.++++
T Consensus 1796 ~~in~~~G~~~~i~~~il~ 1814 (2272)
T TIGR01257 1796 SCANLFIGINSSAITFVLE 1814 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556667777766666554
No 132
>PLN02436 cellulose synthase A
Probab=27.70 E-value=3.6e+02 Score=34.14 Aligned_cols=53 Identities=9% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHLFDSS 607 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~~~~~ 607 (620)
.+.+.+++-...++.+.+.||+.==..++.|+.|.++++ |+.++..+|+.+..
T Consensus 916 s~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfav-----l~~iLKvLggs~~~ 968 (1094)
T PLN02436 916 SIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFAL-----FQGLLKVLAGVNTN 968 (1094)
T ss_pred HHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHHhccCccc
Confidence 334444444444443446677765544544554444444 45666777776643
No 133
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=27.67 E-value=5e+02 Score=24.12 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 569 YVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 569 ~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
-+..+|-+++.|++++.+++++...+.+..++
T Consensus 98 gi~~Al~tT~~GL~vai~~~~~~~~l~~~~~~ 129 (139)
T PF01618_consen 98 GISVALITTAYGLVVAIPALPFYNYLKRRVER 129 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999888888766554
No 134
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=27.57 E-value=4.7e+02 Score=31.74 Aligned_cols=18 Identities=6% Similarity=0.039 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 007037 546 SSLACIFLLAIGKAHNQK 563 (620)
Q Consensus 546 vSlvaLfLLG~~KAkvS~ 563 (620)
+.++..++++.+.+++..
T Consensus 60 ~~~l~~~l~~~~~G~laD 77 (1140)
T PRK06814 60 VFILPFFIFSALAGQLAD 77 (1140)
T ss_pred HHHHHHHHHhhhHHhhhh
Confidence 334444555555566554
No 135
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=27.40 E-value=1.2e+03 Score=28.62 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 007037 504 FWVHATLVFLSYIIFGLIPP 523 (620)
Q Consensus 504 P~~aALvSfLSFiIGGLIPL 523 (620)
-+.+++++.++|+.+.+.|+
T Consensus 281 I~~s~lT~~~gf~~l~~~~~ 300 (910)
T TIGR00833 281 ILGSALTVAVAFLALSLARL 300 (910)
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 34568888888877777665
No 136
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.36 E-value=5.6e+02 Score=24.75 Aligned_cols=33 Identities=18% Similarity=0.016 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 568 SYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 568 s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
.-.-+.-+.+==|++|+.+.|++-+++-+-+.|
T Consensus 95 ee~GG~weL~kEGf~asfa~FlvtWIi~Yt~~h 127 (129)
T KOG3415|consen 95 EEYGGHWELLKEGFMASFALFLVTWIIFYTLAH 127 (129)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334455566677889999999988877655443
No 137
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=27.34 E-value=6.3e+02 Score=28.49 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q 007037 452 IFAMALANLIGGLFIVAHNLREL 474 (620)
Q Consensus 452 ILIaGLAnLIAGAISMG~eYLS~ 474 (620)
=+--+++.++||+++.+..|++.
T Consensus 63 G~nR~lGTl~aG~La~~~~~la~ 85 (406)
T PF11744_consen 63 GLNRGLGTLLAGILAFGVSWLAS 85 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467889999999999877753
No 138
>COG3174 Predicted membrane protein [Function unknown]
Probab=27.22 E-value=3.1e+02 Score=30.73 Aligned_cols=61 Identities=11% Similarity=-0.116 Sum_probs=34.3
Q ss_pred HHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 007037 516 IIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTS 584 (620)
Q Consensus 516 iIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAA 584 (620)
+.+-+.|++|+-=...... ..-++.+.+.+.++-..||+..+..+ ..|+.+-+-++|.+..
T Consensus 109 ~a~v~~P~~p~~~~~~~~~---~r~v~~~v~li~ais~~~Yia~ri~g-----~~~Gli~t~liGg~vS 169 (371)
T COG3174 109 LAAVVYPVLPNGGVDPWGG---PREVWLMVVLIAAISFAGYIAVRILG-----GRRGLILTGLIGGFVS 169 (371)
T ss_pred HHHHhcccCCCCCCCCCcc---chhHHHHHHHHHHHHHHHHHHHHHHc-----cccchhHHHHHhhhcc
Confidence 4555678888742111111 23466666667777888888888866 1244444444544433
No 139
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=27.20 E-value=2.4e+02 Score=27.62 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 007037 545 GSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 545 avSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG 591 (620)
+++++++++.|+....-.. ...+.|.+++.++.+.+..+++++++
T Consensus 55 ~IavIaIivaG~~liFGg~--~~gf~Rrl~~vVlg~~il~gAt~i~~ 99 (135)
T PRK13871 55 FIALAAVAIAGAMLIFGGE--LNDFARRLCYVALVGGVLLGATQIVA 99 (135)
T ss_pred HHHHHHHHHHHHHHHhCcc--hhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445566666655544322 12344888888887777777777774
No 140
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=26.85 E-value=37 Score=33.62 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=9.7
Q ss_pred eeeecceeeeeee
Q 007037 268 IFKCLSCFTVFFP 280 (620)
Q Consensus 268 vfrClsCfs~fip 280 (620)
-|+|..|-.-+..
T Consensus 136 ~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 136 GFRCPQCGEMLEE 148 (178)
T ss_pred CCcCCCCCCCCee
Confidence 3999999766544
No 141
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=26.74 E-value=29 Score=26.78 Aligned_cols=19 Identities=37% Similarity=0.760 Sum_probs=9.7
Q ss_pred hhHHHHhhhcccccccCCCCCc
Q 007037 178 IDVEGVLKKQSTHDLYCPNCNS 199 (620)
Q Consensus 178 ~d~E~vl~kQ~thdlyCPnC~s 199 (620)
..||.+|. .|.++||.|..
T Consensus 3 ~~lelll~---~H~~dC~~C~~ 21 (41)
T PF10588_consen 3 TVLELLLA---NHPLDCPTCDK 21 (41)
T ss_dssp HHHHHHHT---T----TTT-TT
T ss_pred HHHHHHHh---CCCCcCcCCCC
Confidence 35677775 69999999963
No 142
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=26.68 E-value=6.5e+02 Score=25.07 Aligned_cols=19 Identities=16% Similarity=0.238 Sum_probs=10.0
Q ss_pred cHHHHHHHHHHHHHHhhhh
Q 007037 503 NFWVHATLVFLSYIIFGLI 521 (620)
Q Consensus 503 nP~~aALvSfLSFiIGGLI 521 (620)
|....|+.+.+.|++..++
T Consensus 5 DlI~igiftaiyfvi~~v~ 23 (189)
T TIGR02185 5 DFIFIGLLTAIYFAIQFIV 23 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566666655554443
No 143
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=26.62 E-value=9.3e+02 Score=27.55 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007037 431 ESMTSLGVVTSAAATGATTLNIFAMALANLIGG 463 (620)
Q Consensus 431 GLVTsfGVVaGaAGAgss~lvILIaGLAnLIAG 463 (620)
-+.+.+++-+|.+.+--.|.+-+-++++..++.
T Consensus 122 ~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~ 154 (574)
T PRK01862 122 SASSLLTIGSGGSIGREGPMVQLAALAASLVGR 154 (574)
T ss_pred HHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH
Confidence 455666666676666666666655665555544
No 144
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.60 E-value=34 Score=41.42 Aligned_cols=12 Identities=25% Similarity=0.149 Sum_probs=6.1
Q ss_pred cccccHHHhhhh
Q 007037 121 DEELHMEEANKL 132 (620)
Q Consensus 121 ~~~~~~~~~~~~ 132 (620)
+-|+.|+..+-.
T Consensus 621 k~e~~Mrr~nW~ 632 (1102)
T KOG1924|consen 621 KPEVPMRRFNWS 632 (1102)
T ss_pred CCCCccccCCcc
Confidence 445566554433
No 145
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=26.19 E-value=5.4e+02 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.187 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHhh-hhhhhcccccc
Q 007037 448 TTLNIFAMALANLIGGLFIVAH-NLRELKTDGAE 480 (620)
Q Consensus 448 s~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~ 480 (620)
+...+++..++..++.+-+|++ .|.+.+-.+..
T Consensus 35 ~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~ 68 (286)
T PRK12895 35 HPIKILLILIAAVSARTSAMSINRIEGLRYDMIN 68 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence 3445555666667778888888 68866555544
No 146
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=26.10 E-value=6e+02 Score=28.83 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhhhHhhhhc---cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 007037 508 ATLVFLSYIIFGLIPPVVYGFS---FHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTS 584 (620)
Q Consensus 508 ALvSfLSFiIGGLIPLLPY~fs---~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAA 584 (620)
.+...+++++=...||+-+++. .+.+....++=.+.=.+.=+.-++||+..+-... ...-.-...+..+++|++|-
T Consensus 238 vv~i~~~ll~P~a~pLig~Lm~GNllrEsGv~rLs~taqn~l~nivTifLGl~vG~t~~-A~~FL~~~tl~Il~LGlvAF 316 (399)
T TIGR03136 238 VAAMLLCLLLPVASPLILSFFLGVAIKEAQIEPYQNLLEKTLTYGSTLFLGLVLGVLCE-ASTLLDPRVSILLVLGITAL 316 (399)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhhcc-HHhhCChHHHHHHHHHHHHH
Confidence 5556667788888899888763 2222211111122222222333445555544433 12233346677888999999
Q ss_pred HHHHHHHHHHHHHHHHc
Q 007037 585 GLSYVFGDLIKKLAEQL 601 (620)
Q Consensus 585 aiSYlIG~Lf~~lL~k~ 601 (620)
.++-.-|-++.+++-++
T Consensus 317 ~~~tagGvl~aK~mn~f 333 (399)
T TIGR03136 317 LISGIGGVLGGWFVYWF 333 (399)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 99999998888877665
No 147
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=25.99 E-value=1.5e+02 Score=29.21 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 007037 544 GGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVF 590 (620)
Q Consensus 544 IavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlI 590 (620)
.++++.++.++.+++.+--. ---+|+--..-+++.|+...+++|++
T Consensus 73 ~~lG~~~f~~~y~l~~~~~~-dvP~~~~~~~S~~~Fg~gllGisYGi 118 (153)
T PF11947_consen 73 TALGVAVFVVFYYLKSRQIV-DVPPWAVLLVSLVFFGLGLLGISYGI 118 (153)
T ss_pred HHHHHHHHHHHHHHHhcccc-ccCchHHHHHHHHHHHHHHHhhhhhh
No 148
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=25.93 E-value=5.5e+02 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 007037 433 MTSLGVVTSAAATGATTLNIFAMALANLIGG 463 (620)
Q Consensus 433 VTsfGVVaGaAGAgss~lvILIaGLAnLIAG 463 (620)
.+.+++-+|.+.+.-.|.+-+-++++..++.
T Consensus 86 ~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~ 116 (390)
T cd01034 86 LTLLGLLGGASVGREGPSVQIGAAVMLAIGR 116 (390)
T ss_pred HHHHHHHcCCCcCCcccHHHHHHHHHHHHHH
Confidence 4455556666655566766666665554443
No 149
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=25.78 E-value=7.3e+02 Score=25.40 Aligned_cols=26 Identities=8% Similarity=0.215 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 568 SYVKTVLYHLSIGFMTSGLSYVFGDL 593 (620)
Q Consensus 568 s~irSgLrmLlIGllAAaiSYlIG~L 593 (620)
+..+..-.....|.+-+++++++|.+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (279)
T PRK12884 253 ETIRKVRKITLTAMLLALVAFALGAI 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555666777778888888753
No 150
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=25.70 E-value=6.6e+02 Score=29.06 Aligned_cols=52 Identities=10% Similarity=-0.014 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHcCC
Q 007037 548 LACIFLLAIGKAHNQKPPNRSYVKTV-LYHLSIGFMTSGLSYVFGDL---IKKLAEQLHL 603 (620)
Q Consensus 548 lvaLfLLG~~KAkvS~~t~~s~irSg-LrmLlIGllAAaiSYlIG~L---f~~lL~k~g~ 603 (620)
++++.++|++..++. ..|-+.. +-.+++++++.++.++.+.+ ++.++.|+=+
T Consensus 242 l~~~~~~~~~~~~~g----g~~~~~~~~~~~~~~~~~~~~~~~s~~lr~~l~~~~~k~~~ 297 (679)
T TIGR02916 242 LLAMAGAGYYLRYFG----GEWGDAFQLAFLFAAGLLLAVLLFSGTLRARLRVFISKHFF 297 (679)
T ss_pred HHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 344555666665554 3444433 23334555555556666666 5556655433
No 151
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=25.67 E-value=26 Score=24.42 Aligned_cols=11 Identities=36% Similarity=1.183 Sum_probs=7.7
Q ss_pred cccccCCCCCc
Q 007037 189 THDLYCPNCNS 199 (620)
Q Consensus 189 thdlyCPnC~s 199 (620)
..+.|||||..
T Consensus 14 ~~~~fC~~CG~ 24 (26)
T PF13248_consen 14 PDAKFCPNCGA 24 (26)
T ss_pred cccccChhhCC
Confidence 34678888864
No 152
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.65 E-value=42 Score=42.32 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=9.5
Q ss_pred HHHHhhhhhhHhhhh
Q 007037 514 SYIIFGLIPPVVYGF 528 (620)
Q Consensus 514 SFiIGGLIPLLPY~f 528 (620)
-|++-|.||||-=.+
T Consensus 667 lfflRG~iPLLeRyi 681 (2365)
T COG5178 667 LFFLRGHIPLLERYI 681 (2365)
T ss_pred HHHHhcccHHHHHHH
Confidence 356677788776433
No 153
>PHA00626 hypothetical protein
Probab=25.59 E-value=42 Score=28.42 Aligned_cols=18 Identities=28% Similarity=0.709 Sum_probs=13.8
Q ss_pred ccCCCCCc-cceeeEEEee
Q 007037 192 LYCPNCNS-CITRRVILVR 209 (620)
Q Consensus 192 lyCPnC~s-CITrrVIL~k 209 (620)
+.||+|+| =|.|.=|.|+
T Consensus 1 m~CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 1 MSCPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCCCceeeeeceecc
Confidence 36999999 5888777665
No 154
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=25.46 E-value=8.2e+02 Score=31.30 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 007037 504 FWVHATLVFLSYIIFGLIPP 523 (620)
Q Consensus 504 P~~aALvSfLSFiIGGLIPL 523 (620)
-+..+++++++.++.++.|.
T Consensus 1065 Vl~g~lTT~lGvlvLafs~s 1084 (1145)
T TIGR00918 1065 VLDGALSTLLGVLMLAGSEF 1084 (1145)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 34457777788777777773
No 155
>COG3872 Predicted metal-dependent enzyme [General function prediction only]
Probab=25.45 E-value=8.5e+02 Score=26.65 Aligned_cols=21 Identities=10% Similarity=0.064 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007037 571 KTVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 571 rSgLrmLlIGllAAaiSYlIG 591 (620)
|+|--.+++-++.+.+-|.+.
T Consensus 207 RCGtsFl~~~~iV~i~v~slv 227 (318)
T COG3872 207 RCGTSFLLFTMIVGIFVYSLV 227 (318)
T ss_pred ccCchhhHHHHHHHHHHHHhc
Confidence 566666666666666666543
No 156
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=25.39 E-value=2.3e+02 Score=31.01 Aligned_cols=89 Identities=12% Similarity=-0.008 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcC---------------------
Q 007037 505 WVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQK--------------------- 563 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~--------------------- 563 (620)
.-.|.++.+|..-+-+++++.+..+ +. ..+.+...++.+.=+++|++.+.+-.
T Consensus 137 ~D~gA~~i~sl~~GPf~tMl~LG~s--G~----a~ip~~~lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF~~f~l 210 (314)
T PF03812_consen 137 EDVGAFSILSLNDGPFFTMLALGAS--GL----ANIPWMSLVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPFFGFAL 210 (314)
T ss_pred HHhHHHHHHHhhhhHHHHHHHHhhc--cc----cCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeehhhhhh
Confidence 3345666666666666666655442 10 12233333444444555555544321
Q ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 564 ---PPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAE 599 (620)
Q Consensus 564 ---~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~ 599 (620)
..-+..+++++-=+++|+++.+++-+...++.+++.
T Consensus 211 Ga~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~ 249 (314)
T PF03812_consen 211 GAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLIL 249 (314)
T ss_pred cCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHc
Confidence 011466788888888899888888888888888764
No 157
>PF14045 YIEGIA: YIEGIA protein
Probab=25.15 E-value=3.1e+02 Score=29.73 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=14.6
Q ss_pred hhhhccccccccchhhhhHHHHH
Q 007037 471 LRELKTDGAEGTSTRTTSKQEDR 493 (620)
Q Consensus 471 YLS~KSErD~~~sErEREEl~dI 493 (620)
||++-+|+=...++.||+-|.++
T Consensus 63 FLaLAaqQFRdVR~mER~tL~~l 85 (285)
T PF14045_consen 63 FLALAAQQFRDVRNMERETLTNL 85 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777776555566677766553
No 158
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.03 E-value=8.8e+02 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHhh-hhhhhccccccc
Q 007037 433 MTSLGVVTSAAAT-----GATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAEG 481 (620)
Q Consensus 433 VTsfGVVaGaAGA-----gss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~~ 481 (620)
.+.+.++.|.+-+ ..+....++..++.++..+.+..+ +|-+.+.-.|..
T Consensus 17 ~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~ 71 (317)
T PRK13387 17 ASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTA 71 (317)
T ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcc
Confidence 4556666666543 235556666666667677777777 799988888764
No 159
>TIGR00930 2a30 K-Cl cotransporter.
Probab=24.93 E-value=6.7e+02 Score=31.16 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHh
Q 007037 431 ESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVA 468 (620)
Q Consensus 431 GLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG 468 (620)
||--.++-|.|-+|.+.....++++|+..++ .++||+
T Consensus 96 ~iFlr~~~Vvg~aG~~~sll~~~la~~vtll-taLS~s 132 (953)
T TIGR00930 96 ILFLRLSWIVGQAGIGLSLLIILLCCCVTTI-TGLSMS 132 (953)
T ss_pred eeeeeHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4445566677777765444455555554433 455555
No 160
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=24.71 E-value=3e+02 Score=28.39 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 007037 587 SYVFGDLIKKL 597 (620)
Q Consensus 587 SYlIG~Lf~~l 597 (620)
+=+.++++.+.
T Consensus 81 aPVaSHaIARA 91 (197)
T PRK12585 81 TPVASHLINRA 91 (197)
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 161
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=24.63 E-value=1.4e+02 Score=28.64 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 007037 550 CIFLLAIGKAHN 561 (620)
Q Consensus 550 aLfLLG~~KAkv 561 (620)
.+.+++++.+-.
T Consensus 39 ~ltvvaY~iGDl 50 (136)
T PF10710_consen 39 VLTVVAYLIGDL 50 (136)
T ss_pred HHHHHHHHHHHH
Confidence 455555544443
No 162
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.38 E-value=4.5e+02 Score=25.95 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCCC
Q 007037 579 IGFMTSGLSYVFGDLIKK-LAEQLHLFDSSLEPN 611 (620)
Q Consensus 579 IGllAAaiSYlIG~Lf~~-lL~k~g~~~~~~~~~ 611 (620)
+|.....+.-+.|.++.. ++++||++-.+..+.
T Consensus 93 lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~ 126 (150)
T COG3238 93 LGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPL 126 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCC
Confidence 677777777888888865 579999998766554
No 163
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.34 E-value=6e+02 Score=23.86 Aligned_cols=87 Identities=13% Similarity=-0.004 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHhCCccc-HHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007037 486 TTSKQEDRYRELLGRREN-FWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKP 564 (620)
Q Consensus 486 EREEl~dIY~eeLG~~~n-P~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~ 564 (620)
+.+.+.+.|.+.-. +.+ +....++.+.-++..|++=++.+.-. ..+...++.+.+++ ++...+.|+...+ .
T Consensus 14 q~~~i~~~~~~~~~-~~~~~~~~l~~lGall~~~gii~fvA~nW~---~i~~~~k~~~~~~~-~~~~~~~~~~~~~-~-- 85 (145)
T PF09925_consen 14 QAEAILAFYGERPS-RSSWLARILLYLGALLLGLGIILFVAANWD---DIPRLAKLGLLLAL-LLLSYVGGFWLWR-R-- 85 (145)
T ss_pred HHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHH-HHHHHHHHHHHHh-c--
Confidence 44455555553211 122 33444455555555555544444331 11233455554433 2222233332222 2
Q ss_pred CCCchhHHHHHHHHHHH
Q 007037 565 PNRSYVKTVLYHLSIGF 581 (620)
Q Consensus 565 t~~s~irSgLrmLlIGl 581 (620)
..+....++-.+...+
T Consensus 86 -~~~~~~~~l~~l~~~l 101 (145)
T PF09925_consen 86 -RSPRLAEALLLLGAVL 101 (145)
T ss_pred -cCcHHHHHHHHHHHHH
Confidence 2555665555543333
No 164
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=24.30 E-value=1e+03 Score=28.09 Aligned_cols=137 Identities=9% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhhhhhhhccccccccchhhhhHHHHHHHHHhCCcccHHHHHHHH
Q 007037 432 SMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAHNLRELKTDGAEGTSTRTTSKQEDRYRELLGRRENFWVHATLV 511 (620)
Q Consensus 432 LVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~eYLS~KSErD~~~sErEREEl~dIY~eeLG~~~nP~~aALvS 511 (620)
+++.+++..|..+.-.--..+.. ..+.++++.+.|...|. +.++|.+ .++..
T Consensus 28 l~~~L~~~l~~~~~Y~~~R~~~~-~~~A~l~aiLyl~~py~-----------------l~~~y~r----------gni~e 79 (616)
T PF10131_consen 28 LFIFLAFFLGGLGMYFLGRRLGR-RKAAILAAILYLFSPYH-----------------LRNIYWR----------GNIPE 79 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhHHH-----------------HHHHHhc----------chHHH
Q ss_pred HHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 007037 512 FLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 512 fLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG 591 (620)
.+++.+.-++-+.-+.+.-......-..+++++++.+++-.+..++.+-+.. .--.+....+.=....+..++++++|
T Consensus 80 ~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsHll~~ll~~l~~~--~~lLi~~~~~~~~~~~l~~~~a~~lg 157 (616)
T PF10131_consen 80 TLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSHLLSTLLTGLALI--VFLLIYLIQRKRFKRNLIKLVAIVLG 157 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 007037 592 DLIKKLA 598 (620)
Q Consensus 592 ~Lf~~lL 598 (620)
.++..+.
T Consensus 158 l~lsafw 164 (616)
T PF10131_consen 158 LLLSAFW 164 (616)
T ss_pred HHHHHHH
No 165
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=24.01 E-value=3.4e+02 Score=34.43 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccccchhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHHHhhhhhh
Q 007037 455 MALANLIGGLFIVAHNLRELKTDGAEGTSTRTTSKQEDRYRELLGRRENFWVHATLVFLSYIIFGLIPP 523 (620)
Q Consensus 455 aGLAnLIAGAISMG~eYLS~KSErD~~~sErEREEl~dIY~eeLG~~~nP~~aALvSfLSFiIGGLIPL 523 (620)
+-||-++.+.|-|.++|-........ .+.+...+. +.| .+-...++...++|.++++.|+
T Consensus 466 LvLgIGVDn~Fllv~~~~~t~~~~~v------~~r~~~~l~-~~g--~SI~~tslt~~~aF~~ga~t~~ 525 (1145)
T TIGR00918 466 LALGVGVDDVFLLAHAFSETGQNIPF------EERTGECLK-RTG--ASVVLTSISNVTAFFMAALIPI 525 (1145)
T ss_pred HHhhhhhcchhHHHHHHhhcCccCCH------HHHHHHHHH-Hhc--ceeeHHHHHHHHHHHHHhcCCC
Confidence 33445567777777666332211000 011222222 223 3567789999999999999886
No 166
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=23.64 E-value=5.3e+02 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=27.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 567 RSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 567 ~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
.+.+-.+|-++.+|+++|+.+|++=..|.+..++
T Consensus 160 A~GIseAL~aTA~GL~vAIPAvi~yn~l~r~~~~ 193 (216)
T COG0811 160 APGISEALIATAIGLFVAIPAVVAYNVLRRKVEE 193 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999998888765443
No 167
>PHA02753 hypothetical protein; Provisional
Probab=23.57 E-value=9.1e+02 Score=25.72 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhh
Q 007037 505 WVHATLVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLPY~f 528 (620)
+..|+.+++.|.+|+.+-=+-|.+
T Consensus 191 F~~ALAl~lG~VVG~Aia~lL~~~ 214 (298)
T PHA02753 191 FGFALALGLGAVVGGAIAGLLFMA 214 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888888888888766555544
No 168
>COG3704 VirB6 Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion]
Probab=23.53 E-value=6.7e+02 Score=28.40 Aligned_cols=46 Identities=2% Similarity=0.034 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
+|++|..-+..+ .+|++..+.+++.=++.+++.-++-..+...|.+
T Consensus 234 ~l~lF~~TR~~F-----d~Wl~~lisy~lqp~l~~a~~~lli~i~d~~l~~ 279 (406)
T COG3704 234 PLMLFDRTRRLF-----DNWLGQLISYALQPMLLVAFIALLITILDTYLTA 279 (406)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455545444 7799999998888777777777777777665543
No 169
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=23.35 E-value=33 Score=32.36 Aligned_cols=14 Identities=36% Similarity=0.990 Sum_probs=11.7
Q ss_pred hcccccccCCCCCc
Q 007037 186 KQSTHDLYCPNCNS 199 (620)
Q Consensus 186 kQ~thdlyCPnC~s 199 (620)
=|.-.+.|||+|..
T Consensus 69 w~~irEyyCP~Cgt 82 (112)
T PF08882_consen 69 WQVIREYYCPGCGT 82 (112)
T ss_pred cEEEEEEECCCCcc
Confidence 37788999999985
No 170
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=23.32 E-value=6.2e+02 Score=23.70 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007037 572 TVLYHLSIGFMTSGLSYVFG 591 (620)
Q Consensus 572 SgLrmLlIGllAAaiSYlIG 591 (620)
+.+..+++.++..+-|.++-
T Consensus 80 al~Ft~~i~~iiv~GSlWIM 99 (109)
T PRK10582 80 AFVFTVLIIAILVVGSIWIM 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445554555555555443
No 171
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=23.22 E-value=7.2e+02 Score=31.45 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=7.7
Q ss_pred ccchhHHHHHHHHHHHH
Q 007037 427 GGLAESMTSLGVVTSAA 443 (620)
Q Consensus 427 GgnDGLVTsfGVVaGaA 443 (620)
+-.=+++..+.+++++.
T Consensus 15 ~~~~~~~~~~~l~~~v~ 31 (1094)
T PRK02983 15 GWTVGVIATLSLLASVS 31 (1094)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33334444444544444
No 172
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=23.16 E-value=3.3e+02 Score=28.41 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q 007037 570 VKTVLYHLSIGFM 582 (620)
Q Consensus 570 irSgLrmLlIGll 582 (620)
.|+.+..+++|..
T Consensus 63 rk~~~~~~l~gg~ 75 (249)
T PF10225_consen 63 RKSMFYAVLYGGW 75 (249)
T ss_pred CcchhHHHHhhhh
Confidence 3344444444444
No 173
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=23.06 E-value=8.7e+02 Score=27.85 Aligned_cols=138 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHH-Hhh--hhhhhccccccccchhhhhHHHHHHHHHhCCccc
Q 007037 431 ESMTSLGVVTSAAATG----ATTLNIFAMALANLIGGLFI-VAH--NLRELKTDGAEGTSTRTTSKQEDRYRELLGRREN 503 (620)
Q Consensus 431 GLVTsfGVVaGaAGAg----ss~lvILIaGLAnLIAGAIS-MG~--eYLS~KSErD~~~sErEREEl~dIY~eeLG~~~n 503 (620)
|.++++++.-+++.-. ..+.-.+..|++|++++.+. |.. .|.........--+.+
T Consensus 272 ~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~srs~~~~~~G~~t~------------------ 333 (563)
T TIGR00815 272 GLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNAKAGCRTQ------------------ 333 (563)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchHHHHHHhcCCcch------------------
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 007037 504 FWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMT 583 (620)
Q Consensus 504 P~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllA 583 (620)
.+++++++..++..++ +.|++- .+..++..+++....+++...+.....-+.-+...+-+++.-+++
T Consensus 334 --~a~i~~~~~~l~~~l~-~~~~l~----------~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~~~ 400 (563)
T TIGR00815 334 --LSGVVTAIVVLLVLLV-LTPLFY----------YIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFFGV 400 (563)
T ss_pred --HHHHHHHHHHHHHHHH-HHHHHH----------hChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 007037 584 SGLSYVFGDLIKKLAE 599 (620)
Q Consensus 584 AaiSYlIG~Lf~~lL~ 599 (620)
....+..|-+++-.+.
T Consensus 401 ~~~~~~~Gi~vGv~~s 416 (563)
T TIGR00815 401 VFTSIEIGLLVGVALS 416 (563)
T ss_pred HHHHHHHHHHHHHHHH
No 174
>PRK10429 melibiose:sodium symporter; Provisional
Probab=23.02 E-value=1e+03 Score=25.96 Aligned_cols=14 Identities=7% Similarity=0.012 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhcC
Q 007037 550 CIFLLAIGKAHNQK 563 (620)
Q Consensus 550 aLfLLG~~KAkvS~ 563 (620)
+.++.+.+.-++.+
T Consensus 282 ~~~~~~~l~~r~gk 295 (473)
T PRK10429 282 TLILFPRLVKSLSR 295 (473)
T ss_pred HHHHHHHHHHHcCc
Confidence 33444444444443
No 175
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=22.75 E-value=81 Score=29.90 Aligned_cols=16 Identities=13% Similarity=0.607 Sum_probs=12.9
Q ss_pred CCceeeecceeeeeee
Q 007037 265 KPYIFKCLSCFTVFFP 280 (620)
Q Consensus 265 ~p~vfrClsCfs~fip 280 (620)
..+.|+|..|-.+|=+
T Consensus 121 ~~~f~~C~~C~kiyW~ 136 (147)
T PF01927_consen 121 YDEFWRCPGCGKIYWE 136 (147)
T ss_pred CCeEEECCCCCCEecc
Confidence 3458999999999855
No 176
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=22.74 E-value=3.3e+02 Score=23.65 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007037 545 GSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGD 592 (620)
Q Consensus 545 avSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~ 592 (620)
+++++++++.|+....- + .+ ++..++.++.+++..+++.++++
T Consensus 56 ~i~~i~ii~~g~~~~~g-~---~~-~~~~~~~v~G~~iv~~A~~iv~~ 98 (99)
T PF04956_consen 56 AIAIIAIIVAGIMMMFG-R---QS-WRWFIGVVIGIIIVFGAPSIVSW 98 (99)
T ss_pred HHHHHHHHHHHHHHHhC-C---cC-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445555543332 2 23 77777766666666666665543
No 177
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=22.69 E-value=3.9e+02 Score=27.98 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=3.3
Q ss_pred hhhhhHhh
Q 007037 519 GLIPPVVY 526 (620)
Q Consensus 519 GLIPLLPY 526 (620)
-++|..++
T Consensus 50 ~~~p~~~~ 57 (293)
T PF03419_consen 50 IFFPPLSF 57 (293)
T ss_pred HhhcCHHH
Confidence 33354443
No 178
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=22.57 E-value=3.7e+02 Score=21.99 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 568 SYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 568 s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k 600 (620)
..++.++-..++-.+...+++.+|+.+.+++.+
T Consensus 21 ~~~~~~~~ig~~~~~~~~~G~~~G~~~~~~~~~ 53 (67)
T PF02659_consen 21 IILLIALIIGIFQFIMPLLGLLLGRRLGRFIGS 53 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455565555555566666777777777665543
No 179
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=22.40 E-value=1e+03 Score=25.98 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=19.6
Q ss_pred hccchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhh-hhhh
Q 007037 426 YGGLAESMTSLGVVTSAAATGATTLNIFAMALANLIGGLFIVAH-NLRE 473 (620)
Q Consensus 426 yGgnDGLVTsfGVVaGaAGAgss~lvILIaGLAnLIAGAISMG~-eYLS 473 (620)
+-.+|..+...++-.=..--+.+...+-....+-+++.++++-. ++++
T Consensus 17 ~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~ 65 (495)
T PRK14995 17 PVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALG 65 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566655555443322222333333333333334444433332 4553
No 180
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=22.15 E-value=7.2e+02 Score=25.57 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCChHH---HHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHHHHHHHhCCcccHHHH
Q 007037 432 SMTSLGVVTSAAATGATTLN---IFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQEDRYRELLGRRENFWVH 507 (620)
Q Consensus 432 LVTsfGVVaGaAGAgss~lv---ILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~dIY~eeLG~~~nP~~a 507 (620)
..+.+..+.|..-+...... .+++-++..++-+.++.+ +|.+.+-++... +.| -+=..++..+.--+..
T Consensus 17 ~~~~~~~~~g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~R------pl~~G~is~~~a~~~~ 89 (276)
T PRK12882 17 VVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINR-PDR------PIPSGAVSPRGALAFS 89 (276)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-CCC------CcCCCCcCHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 007037 508 ATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLS 587 (620)
Q Consensus 508 ALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiS 587 (620)
.+..++++++...++.+..++ .+.-+++++.+.+.-+ .+..+-.+.+|.+++..
T Consensus 90 ~~l~~~g~~~~~~l~~~~~~~-------------------~~~~~~~~~~Yt~~lK------~~~~~g~~~vg~~~g~~- 143 (276)
T PRK12882 90 ILLFAAGVALAFLLPPLCLAI-------------------ALFNSLLLVLYAETLK------GTPGLGNASVAYLTGST- 143 (276)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-------------------HHHHHHHHHHHHHHHh------cccchhHHHHHHHHHHH-
Q ss_pred HHHHHHH
Q 007037 588 YVFGDLI 594 (620)
Q Consensus 588 YlIG~Lf 594 (620)
++.|...
T Consensus 144 ~~~g~~~ 150 (276)
T PRK12882 144 FLFGGAA 150 (276)
T ss_pred HHHHHHH
No 181
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=22.15 E-value=3.1e+02 Score=28.40 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 007037 568 SYVKTVLYHLSIGFMTSGLSYVFGD 592 (620)
Q Consensus 568 s~irSgLrmLlIGllAAaiSYlIG~ 592 (620)
.++...+.+++.|+...+++++.-.
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~ 94 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWP 94 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777776533
No 182
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=22.04 E-value=1.4e+03 Score=27.31 Aligned_cols=19 Identities=11% Similarity=0.020 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhhhHhhhh
Q 007037 510 LVFLSYIIFGLIPPVVYGF 528 (620)
Q Consensus 510 vSfLSFiIGGLIPLLPY~f 528 (620)
..-++.++|.++-.+.++.
T Consensus 314 mgCvgKIlG~vitaVsvvA 332 (593)
T PRK15374 314 MGCIGKVLGALLTIVSVVA 332 (593)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3445666777766666543
No 183
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=21.98 E-value=4.8e+02 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 007037 571 KTVLYHLSIGFMTSGLSYVFG-DLIKKL 597 (620)
Q Consensus 571 rSgLrmLlIGllAAaiSYlIG-~Lf~~l 597 (620)
..+.+++-..++.++++++.| ++++.+
T Consensus 605 l~lFqTL~~~~~lg~~t~~~G~r~L~~~ 632 (636)
T PF05817_consen 605 LNLFQTLPYLAVLGAVTFLSGNRALREL 632 (636)
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 355666666666667778888 444444
No 184
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=21.95 E-value=7.1e+02 Score=24.92 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=14.3
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 007037 554 LAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLS 587 (620)
Q Consensus 554 LG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiS 587 (620)
.|+..++.-+ .++++.++.+...+.+++..++.
T Consensus 70 ~g~~lg~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PF09991_consen 70 PGLVLGYLLR-KKRSWSRSILAGTLASLLGVLVF 102 (290)
T ss_pred HHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH
Confidence 3444444433 23555555444444444433333
No 185
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=21.94 E-value=2.1e+02 Score=32.50 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHcCCC
Q 007037 586 LSYVFGDLIKKLAEQLHLF 604 (620)
Q Consensus 586 iSYlIG~Lf~~lL~k~g~~ 604 (620)
-++++..+.+.++++.||.
T Consensus 182 G~~~~~~l~~~l~~~~G~r 200 (509)
T KOG2504|consen 182 GTVVFPPLLKYLLSKYGWR 200 (509)
T ss_pred ceeeHHHHHHHHHHHhCcH
Confidence 3556667777778888774
No 186
>TIGR01148 mtrC N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit C. coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=21.54 E-value=8e+02 Score=26.51 Aligned_cols=72 Identities=10% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHH
Q 007037 508 ATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLS 587 (620)
Q Consensus 508 ALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiS 587 (620)
.-+..+.|+++++--+=||---.....+++-.+..++...+++.+++|+.+.-.. +. -++++|++.=.++
T Consensus 170 ~G~IAl~Fi~~~mAilHPFNACLGPnE~q~RTL~La~e~G~ls~ii~~i~s~~~~---------s~-~~iiig~i~W~v~ 239 (265)
T TIGR01148 170 NGYIALLFIIGGMAILHPFNACLGPNESQDRTLWLAVECGFITGFVSSLHEGLMV---------AG-LNILVGAIIWYVA 239 (265)
T ss_pred ccHHHHHHHHHHHHhcCcchhccCCCcchhHHHHHHHHHhHHHHHHHHHHHHhhh---------hH-HHHHHHHHHHHHH
Confidence 4455677889988888888642222334445567777777888999998775331 22 3345666666666
Q ss_pred HH
Q 007037 588 YV 589 (620)
Q Consensus 588 Yl 589 (620)
|.
T Consensus 240 y~ 241 (265)
T TIGR01148 240 FS 241 (265)
T ss_pred HH
Confidence 54
No 187
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=21.51 E-value=2.5e+02 Score=34.14 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=3.9
Q ss_pred HHHHHcCCC
Q 007037 596 KLAEQLHLF 604 (620)
Q Consensus 596 ~lL~k~g~~ 604 (620)
++|..+++.
T Consensus 187 riL~Elkll 195 (832)
T PLN03159 187 RILAEIKLI 195 (832)
T ss_pred HHHHHcCcc
Confidence 344444443
No 188
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.48 E-value=3.6e+02 Score=27.32 Aligned_cols=34 Identities=6% Similarity=-0.024 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 007037 570 VKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHL 603 (620)
Q Consensus 570 irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~ 603 (620)
-+...|-+++++++.+++.++|.++..++.-...
T Consensus 136 ~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~ 169 (194)
T PF11833_consen 136 ERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIV 169 (194)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 3445555667777778888888888877755543
No 189
>PHA03211 serine/threonine kinase US3; Provisional
Probab=21.48 E-value=51 Score=36.60 Aligned_cols=7 Identities=29% Similarity=0.581 Sum_probs=4.1
Q ss_pred eeEEEee
Q 007037 203 RRVILVR 209 (620)
Q Consensus 203 rrVIL~k 209 (620)
++|++|+
T Consensus 195 ~~vavK~ 201 (461)
T PHA03211 195 QRVVVKA 201 (461)
T ss_pred CEEEEec
Confidence 4566664
No 190
>PRK03557 zinc transporter ZitB; Provisional
Probab=21.41 E-value=9.9e+02 Score=25.31 Aligned_cols=14 Identities=7% Similarity=0.090 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHh
Q 007037 431 ESMTSLGVVTSAAA 444 (620)
Q Consensus 431 GLVTsfGVVaGaAG 444 (620)
.+++.+.++.|+..
T Consensus 29 ~~l~i~k~~~g~~t 42 (312)
T PRK03557 29 AGFMLVEVIGGFLS 42 (312)
T ss_pred HHHHHHHHHHHHHh
Confidence 34556666666653
No 191
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.30 E-value=2.5e+02 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.029 Sum_probs=14.6
Q ss_pred CChHHHHHHHHHHHHHHHH--HHhhhhhhhcccccc
Q 007037 447 ATTLNIFAMALANLIGGLF--IVAHNLRELKTDGAE 480 (620)
Q Consensus 447 ss~lvILIaGLAnLIAGAI--SMG~eYLS~KSErD~ 480 (620)
.+.....++|++.+..|.+ +||+-|+..+.....
T Consensus 33 l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~ 68 (191)
T PF04156_consen 33 LGALISFILGIALLALGVVLLSLGLLCLLSKRPVQS 68 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3444444455554443333 333334444444433
No 192
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=21.24 E-value=1.2e+03 Score=26.81 Aligned_cols=36 Identities=11% Similarity=-0.110 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007037 570 VKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHLFD 605 (620)
Q Consensus 570 irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~~~ 605 (620)
+...++-.+-+...+++--..|..|+.++...|..|
T Consensus 289 ~~~~~~~~i~~~~~ilLitgaggafg~Vl~~sg~g~ 324 (442)
T COG2610 289 LMESLESALKPIAMILLITGAGGAFGQVLADSGVGD 324 (442)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhHhhhhHHHhcchhH
Confidence 333334444444444455555556666666665544
No 193
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=21.10 E-value=4.1e+02 Score=33.63 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHLFDSS 607 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~~~~~ 607 (620)
.+.+.+++-.+.++.+.+.||+.==..++.|+.|.++++ |+.++..+|+.+..
T Consensus 900 ~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfav-----l~~iLK~Lggs~~~ 952 (1079)
T PLN02638 900 SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAV-----FQGLLKVLAGIDTN 952 (1079)
T ss_pred HHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHH-----HHHHHHHHccCccc
Confidence 334444444444443446666655444444444444443 55666777776643
No 194
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=21.02 E-value=5.4e+02 Score=25.60 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007037 541 AAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGD 592 (620)
Q Consensus 541 ~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~ 592 (620)
+++++..++.+.++|.+-|.--. +..+.+-.-++++-+++-+++-+++.
T Consensus 56 li~~G~v~~~v~flGc~Ga~~es---~~lL~~y~~~l~l~~i~e~~~~i~~~ 104 (237)
T KOG3882|consen 56 LIAVGGVVFLVGFLGCCGALRES---RCLLLSYFILLLLLFIAELAAGILAF 104 (237)
T ss_pred hhhhhHHHHHHHHhhhhhhHhhh---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555666655444432 44555555455444444444444443
No 195
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=21.01 E-value=1.8e+02 Score=29.74 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007037 539 KIAAVGGSSLACIFLLAIGKA 559 (620)
Q Consensus 539 af~iSIavSlvaLfLLG~~KA 559 (620)
.++++.+++.+++++|++..+
T Consensus 136 s~~~~~~As~v~a~~fs~~~~ 156 (187)
T PF01024_consen 136 SLAAGGAASAVAAFAFSFILG 156 (187)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666554
No 196
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=20.98 E-value=49 Score=30.65 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=9.4
Q ss_pred ceeeecceeeee
Q 007037 267 YIFKCLSCFTVF 278 (620)
Q Consensus 267 ~vfrClsCfs~f 278 (620)
+-|+|.|||=+-
T Consensus 69 DEFTCssCFLV~ 80 (99)
T PF13834_consen 69 DEFTCSSCFLVH 80 (99)
T ss_pred CceeeeeeeeEe
Confidence 449999999654
No 197
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=20.91 E-value=9.6e+02 Score=24.98 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHHHHhh-hhhh
Q 007037 434 TSLGVVTSAAAT--G-ATTLNIFAMALANLIGGLFIVAH-NLRE 473 (620)
Q Consensus 434 TsfGVVaGaAGA--g-ss~lvILIaGLAnLIAGAISMG~-eYLS 473 (620)
..+.++.|..-+ + .+...++++.++..++.+-+|.+ +|.+
T Consensus 17 ~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D 60 (279)
T PRK12869 17 LDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIE 60 (279)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHh
Confidence 444455555433 2 23445566666777777777888 6886
No 198
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=20.82 E-value=2.2e+02 Score=28.08 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 007037 551 IFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKLAEQLHL 603 (620)
Q Consensus 551 LfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~lL~k~g~ 603 (620)
++.+|+-.+.--. ....+.+++.+++|++..++..++..++.+++-|++.
T Consensus 64 l~~VGl~aG~~F~---~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 113 (169)
T PF06826_consen 64 LAAVGLSAGPGFF---SSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNP 113 (169)
T ss_pred HHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3344544444433 5566778999999999999999988888885555543
No 199
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.80 E-value=59 Score=33.32 Aligned_cols=20 Identities=55% Similarity=1.192 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCCCCccc
Q 007037 42 ANKTTAPPPPPPPPPPPAAV 61 (620)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~ 61 (620)
+-...++||+||||+-|.-+
T Consensus 180 ~~~~~~~pp~pppp~~p~~~ 199 (225)
T KOG3397|consen 180 TVSASAPPPPPPPPMAPKMV 199 (225)
T ss_pred ccCCCCCCCcccCCCCccce
No 200
>PRK10404 hypothetical protein; Provisional
Probab=20.74 E-value=2e+02 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=14.8
Q ss_pred ccHHHH-HHHHHHHHHHhhh
Q 007037 502 ENFWVH-ATLVFLSYIIFGL 520 (620)
Q Consensus 502 ~nP~~a-ALvSfLSFiIGGL 520 (620)
.+||.+ |+..+++|++|.|
T Consensus 78 e~Pw~avGiaagvGlllG~L 97 (101)
T PRK10404 78 EKPWQGIGVGAAVGLVLGLL 97 (101)
T ss_pred hCcHHHHHHHHHHHHHHHHH
Confidence 689986 7788888877755
No 201
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=20.47 E-value=1.8e+02 Score=25.77 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=12.0
Q ss_pred ccccCCCCCccceee
Q 007037 190 HDLYCPNCNSCITRR 204 (620)
Q Consensus 190 hdlyCPnC~sCITrr 204 (620)
..|+||+|+.-..+.
T Consensus 15 ~~~~C~~C~~~~~~~ 29 (104)
T TIGR01384 15 GVYVCPSCGYEKEKK 29 (104)
T ss_pred CeEECcCCCCccccc
Confidence 469999999887763
No 202
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=20.32 E-value=9.4e+02 Score=24.64 Aligned_cols=45 Identities=13% Similarity=0.003 Sum_probs=24.7
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHhh-hhhhhcccccc
Q 007037 436 LGVVTSAAATG--ATTLNIFAMALANLIGGLFIVAH-NLRELKTDGAE 480 (620)
Q Consensus 436 fGVVaGaAGAg--ss~lvILIaGLAnLIAGAISMG~-eYLS~KSErD~ 480 (620)
+.++.|.+-+. .+...++++-++..+.-+.++.+ +|.+.+.++..
T Consensus 21 ~~~~~g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~ 68 (279)
T PRK12884 21 IAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN 68 (279)
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc
Confidence 33444544332 22334455556666666667777 68877754433
No 203
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=20.29 E-value=42 Score=35.00 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=19.0
Q ss_pred cccCCCCCccceeeEEEeeccCCCC
Q 007037 191 DLYCPNCNSCITRRVILVRKKPKIP 215 (620)
Q Consensus 191 dlyCPnC~sCITrrVIL~krkr~~~ 215 (620)
--.||+|..|++=||-+..=|+++.
T Consensus 60 rP~C~~C~aC~siRi~v~~F~psrs 84 (240)
T PRK01305 60 RPHCDGCRACVSVRIPVAEFVPSRS 84 (240)
T ss_pred cCCCCCCcCceeEEeeHHHcCcCHH
Confidence 3459999999999998876554443
No 204
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=20.26 E-value=4.5e+02 Score=25.84 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=17.4
Q ss_pred hCCcccHHHHHHHHHHHHHHhhhhhhHhh
Q 007037 498 LGRRENFWVHATLVFLSYIIFGLIPPVVY 526 (620)
Q Consensus 498 LG~~~nP~~aALvSfLSFiIGGLIPLLPY 526 (620)
+..+..|..-|...+++ ++.|++|+.++
T Consensus 10 l~~~~tP~~iA~g~a~G-vf~g~~P~~gl 37 (154)
T TIGR03546 10 LNSNTSPAQLALAVALG-MILGLTPFLNL 37 (154)
T ss_pred HcCCCCHHHHHHHHHHH-HHHHhccchhH
Confidence 34456777766666666 45567776554
No 205
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.26 E-value=3.3e+02 Score=26.78 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=14.4
Q ss_pred CcchhhccchhhhhhhccchhHHHHHHHHHH
Q 007037 411 KASEARRLDILKSIVYGGLAESMTSLGVVTS 441 (620)
Q Consensus 411 ~~~e~~~~e~LRsIVyGgnDGLVTsfGVVaG 441 (620)
|-++.|.|.++- -+-.+=|++-.||.+.|
T Consensus 12 p~~~~r~waml~--hls~llglllpfg~llG 40 (143)
T COG3296 12 PNRESRDWAMLA--HLSALLGLLLPFGSLLG 40 (143)
T ss_pred CChhHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 335666666554 22333355555555554
No 206
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=20.15 E-value=7e+02 Score=28.34 Aligned_cols=56 Identities=21% Similarity=0.148 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 539 KIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLIKKL 597 (620)
Q Consensus 539 af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf~~l 597 (620)
.+++.+++++.=..+=+++|.++.+ +-...++++.+.+++.+++.+.+.--+.+..
T Consensus 106 t~l~G~gIav~nVLLPslIK~~Fpk---~~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 106 TLLAGAGIAVINVLLPSLIKRDFPK---RVGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HHHHHhhHHHHHHhhhHHHHhhccc---chhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 3455566666677788999999987 7789999999999999998888766555443
No 207
>PF14150 YesK: YesK-like protein
Probab=20.15 E-value=6.1e+02 Score=22.81 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007037 579 IGFMTSGLSYVFGDLIKKLAEQ 600 (620)
Q Consensus 579 IGllAAaiSYlIG~Lf~~lL~k 600 (620)
+|+....++.++|.+++.++++
T Consensus 57 mg~g~~~~~v~ig~~ig~i~~~ 78 (81)
T PF14150_consen 57 MGLGVIAFFVFIGSIIGYIAHQ 78 (81)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555666666655554
No 208
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=20.08 E-value=3.1e+02 Score=33.00 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred hccchh-------------HHHHHHHHHHHHhcC----------CChHHHHHHH---HHHHHHHHHHHhhhhhhhccccc
Q 007037 426 YGGLAE-------------SMTSLGVVTSAAATG----------ATTLNIFAMA---LANLIGGLFIVAHNLRELKTDGA 479 (620)
Q Consensus 426 yGgnDG-------------LVTsfGVVaGaAGAg----------ss~lvILIaG---LAnLIAGAISMG~eYLS~KSErD 479 (620)
||++|| +++..=+|.|++-+- ....+++..| ++-+=|-.+|++.+.+=+|+-.
T Consensus 177 yGAMDGAsKFVKGDAIAGiiI~~INiiGGl~IGv~q~gms~~eA~~~YtlLTIGDGLVsQIPALliS~AaGiiVTRv~~- 255 (678)
T TIGR01398 177 YGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALIISTATGLIVTRASS- 255 (678)
T ss_pred ccccCCccccccccHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHhhheeeechhHHHHHHHHHHHHHHheEEEecCC-
Q ss_pred cccchhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHH
Q 007037 480 EGTSTRTTSKQEDRYRELLGRRENFWVHATLVFLSYIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFL 553 (620)
Q Consensus 480 ~~~sErEREEl~dIY~eeLG~~~nP~~aALvSfLSFiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfL 553 (620)
+...-.++..+.++.....+.+|.+.++ +|++|=+|.+- -+.++.++..++..+
T Consensus 256 ------~~~lg~~i~~Ql~~~p~~l~i~a~~l~~----l~lvPG~P~~~----------fl~la~~~~~~~~~~ 309 (678)
T TIGR01398 256 ------EGSFGKAIVTQLGANPRALLIVAAVLGL----LALVPGLPTFP----------FLFLAGALAFLAWYL 309 (678)
T ss_pred ------cccHHHHHHHHHHcCChHHHHHHHHHHH----HhccCCCcHHH----------HHHHHHHHHHHHHHH
No 209
>COG5134 Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=40 Score=35.28 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=19.1
Q ss_pred CCceeeecceeeeeeecCccceee
Q 007037 265 KPYIFKCLSCFTVFFPTCNGQVKY 288 (620)
Q Consensus 265 ~p~vfrClsCfs~fip~g~~f~~~ 288 (620)
.|..-|||+|-+| ||+++.|+--
T Consensus 39 TPF~~RCL~C~~Y-I~K~~rfNav 61 (272)
T COG5134 39 TPFPVRCLNCENY-IQKGTRFNAV 61 (272)
T ss_pred cCcceeecchhhh-hhcccchhHH
Confidence 5788999999886 8999988754
No 210
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=20.01 E-value=2.1e+02 Score=28.94 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=40.1
Q ss_pred hccchhHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHHHHHHHhh-hhhhhccccccccchhhhhHHHHHHHH
Q 007037 426 YGGLAESMTSLGVVTSAAATGATTL-------NIFAMALANLIGGLFIVAH-NLRELKTDGAEGTSTRTTSKQEDRYRE 496 (620)
Q Consensus 426 yGgnDGLVTsfGVVaGaAGAgss~l-------vILIaGLAnLIAGAISMG~-eYLS~KSErD~~~sErEREEl~dIY~e 496 (620)
||--=||+.+|.-++ .+.+.++. .-+++-.++|+++..++-+ +|+.-+.++...+-|...+++..+|.+
T Consensus 135 ~GTV~GIm~aF~~i~--~~~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi~yn~l~r~~~~~~~~~e~~~~~l~~~~~~ 211 (216)
T COG0811 135 LGTVWGIMPAFIGIG--AGGGADLAVVAPGISEALIATAIGLFVAIPAVVAYNVLRRKVEELLAKLEDFAEELELILRR 211 (216)
T ss_pred HHHHHHHHHHHHHHh--ccCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555 11222322 2234445566666677766 888888887776666666666666654
Done!