Query 007037
Match_columns 620
No_of_seqs 150 out of 1021
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:31:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_L DNA-directed RNA polyme 32.1 11 0.00039 30.8 0.4 22 190-215 37-58 (63)
2 3lpe_B DNA-directed RNA polyme 31.2 15 0.00051 29.7 0.9 12 193-204 15-26 (59)
3 2zy9_A Mg2+ transporter MGTE; 28.7 5.4E+02 0.019 27.2 13.6 22 573-594 448-469 (473)
4 4esj_A Type-2 restriction enzy 28.1 16 0.00055 37.1 0.8 9 191-199 34-42 (257)
5 4esj_A Type-2 restriction enzy 24.4 19 0.00067 36.5 0.6 18 190-211 55-72 (257)
6 4dx5_A Acriflavine resistance 23.6 9E+02 0.031 28.0 15.5 15 549-563 484-498 (1057)
7 4dve_A Biotin transporter BIOY 22.8 3.9E+02 0.013 25.8 9.3 42 550-594 109-150 (198)
8 4ayb_P DNA-directed RNA polyme 22.2 31 0.0011 27.1 1.2 23 190-216 22-44 (48)
9 1pw4_A Glycerol-3-phosphate tr 20.4 2.9E+02 0.0098 26.8 8.0 13 508-520 99-111 (451)
10 3h0g_I DNA-directed RNA polyme 20.4 1.7E+02 0.006 25.5 5.9 11 189-199 24-34 (113)
No 1
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.07 E-value=11 Score=30.78 Aligned_cols=22 Identities=18% Similarity=0.523 Sum_probs=17.3
Q ss_pred ccccCCCCCccceeeEEEeeccCCCC
Q 007037 190 HDLYCPNCNSCITRRVILVRKKPKIP 215 (620)
Q Consensus 190 hdlyCPnC~sCITrrVIL~krkr~~~ 215 (620)
-.+.||+|+. ||+.|+|.+...
T Consensus 37 ~~iRC~~CG~----RILyK~Rt~r~~ 58 (63)
T 3h0g_L 37 EVIRCRECGH----RVMYKMRTKRMV 58 (63)
T ss_dssp SCCCCSSSCC----CCCBCCCCCCCE
T ss_pred CceECCCCCc----EEEEEecCCceE
Confidence 4588999986 789998887554
No 2
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=31.17 E-value=15 Score=29.69 Aligned_cols=12 Identities=33% Similarity=0.805 Sum_probs=9.4
Q ss_pred cCCCCCccceee
Q 007037 193 YCPNCNSCITRR 204 (620)
Q Consensus 193 yCPnC~sCITrr 204 (620)
-||||.+|-|-.
T Consensus 15 ~CpnC~~~tt~~ 26 (59)
T 3lpe_B 15 ICPICHSPTSEN 26 (59)
T ss_dssp BCTTTCCBEESC
T ss_pred CCCCCCCCccCC
Confidence 599999986543
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=28.75 E-value=5.4e+02 Score=27.16 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007037 573 VLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 573 gLrmLlIGllAAaiSYlIG~Lf 594 (620)
-+-+.+.-++..++-|.+..+|
T Consensus 448 p~itt~~D~~g~~~~~~~a~~~ 469 (473)
T 2zy9_A 448 PLVATLSDVTGLLIYLSVARLL 469 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444445454443
No 4
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=28.14 E-value=16 Score=37.08 Aligned_cols=9 Identities=56% Similarity=1.564 Sum_probs=7.9
Q ss_pred cccCCCCCc
Q 007037 191 DLYCPNCNS 199 (620)
Q Consensus 191 dlyCPnC~s 199 (620)
..|||||++
T Consensus 34 n~yCPnCG~ 42 (257)
T 4esj_A 34 QSYCPNCGN 42 (257)
T ss_dssp HCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 479999997
No 5
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.41 E-value=19 Score=36.48 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=13.2
Q ss_pred ccccCCCCCccceeeEEEeecc
Q 007037 190 HDLYCPNCNSCITRRVILVRKK 211 (620)
Q Consensus 190 hdlyCPnC~sCITrrVIL~krk 211 (620)
-|+|||||+. .-=||-+|
T Consensus 55 aDF~C~~C~E----eyELKSk~ 72 (257)
T 4esj_A 55 ADFYCNHCSE----EFELKSKK 72 (257)
T ss_dssp CEEECTTTCC----EEEEEEEE
T ss_pred cccccCCcch----hheecccc
Confidence 4799999986 45666555
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=23.60 E-value=9e+02 Score=27.98 Aligned_cols=15 Identities=20% Similarity=0.022 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcC
Q 007037 549 ACIFLLAIGKAHNQK 563 (620)
Q Consensus 549 vaLfLLG~~KAkvS~ 563 (620)
++|+++=++.+++.+
T Consensus 484 ~~l~~~P~l~~~~~~ 498 (1057)
T 4dx5_A 484 VALILTPALCATMLK 498 (1057)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 345555555555543
No 7
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.75 E-value=3.9e+02 Score=25.82 Aligned_cols=42 Identities=7% Similarity=0.023 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 550 CIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 550 aLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
+-++.|++.-+.......+++ ...++..++..++.|++|.+-
T Consensus 109 aA~v~G~l~~~~~~~~~~~~~---~~~~~~~l~G~~~iy~~G~~w 150 (198)
T 4dve_A 109 TPFLIGFFLKKLKITTSQNWF---GELIIVLLFGVIFVDFVGAIW 150 (198)
T ss_dssp HHHHHHHHHHHTTGGGSSCHH---HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccchhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 335566665554321112222 223333344445556666443
No 8
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.23 E-value=31 Score=27.10 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=18.0
Q ss_pred ccccCCCCCccceeeEEEeeccCCCCC
Q 007037 190 HDLYCPNCNSCITRRVILVRKKPKIPK 216 (620)
Q Consensus 190 hdlyCPnC~sCITrrVIL~krkr~~~~ 216 (620)
-..-||.|+- |||.|.|++..+.
T Consensus 22 P~IrCpyCGy----rii~KvR~p~vK~ 44 (48)
T 4ayb_P 22 PGVRCPYCGY----KIIFMVRKPTIKI 44 (48)
T ss_dssp SSSCCTTTCC----SCEECCCCCSCEE
T ss_pred CCcccCccCc----EEEEEecCCccee
Confidence 3567999985 7999999987653
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.39 E-value=2.9e+02 Score=26.81 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q 007037 508 ATLVFLSYIIFGL 520 (620)
Q Consensus 508 ALvSfLSFiIGGL 520 (620)
.+..++++++.++
T Consensus 99 ~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 99 LILAAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444433
No 10
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.37 E-value=1.7e+02 Score=25.53 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=8.0
Q ss_pred cccccCCCCCc
Q 007037 189 THDLYCPNCNS 199 (620)
Q Consensus 189 thdlyCPnC~s 199 (620)
..-++|++|.-
T Consensus 24 ~~~~~C~~C~y 34 (113)
T 3h0g_I 24 VLRLACRNCDY 34 (113)
T ss_dssp CCCEECSSSCC
T ss_pred eeEEECCCCCC
Confidence 45688888864
Done!