Query 007037
Match_columns 620
No_of_seqs 150 out of 1021
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007037.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007037hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 37.8 98 0.0072 27.3 10.4 29 440-468 100-128 (222)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 23.7 2.2E+02 0.016 24.9 10.2 15 458-472 67-82 (447)
3 d3d31c1 f.58.1.1 (C:13-260) Su 21.4 1.2E+02 0.0085 26.2 7.6 27 570-596 46-72 (248)
4 d1a87a_ f.1.1.1 (A:) Colicin N 19.6 28 0.0021 33.6 3.0 24 539-562 233-256 (297)
5 d1ryqa_ g.41.9.3 (A:) putative 18.5 17 0.0012 28.2 0.9 11 194-204 24-35 (67)
6 d2vo1a1 c.37.1.10 (A:1-273) CT 16.8 15 0.0011 35.3 0.3 77 112-194 187-267 (273)
7 d2adra2 g.37.1.1 (A:131-161) A 14.7 7.7 0.00056 26.2 -1.7 24 192-215 2-25 (31)
8 d1s1ma2 c.37.1.10 (A:1-266) CT 14.6 22 0.0016 34.0 0.9 82 106-194 176-261 (266)
9 d2onkc1 f.58.1.1 (C:1-252) Mol 14.3 1.7E+02 0.013 25.1 7.0 79 515-603 3-81 (252)
10 d2nwwa1 f.49.1.1 (A:12-416) Pr 14.1 1.7E+02 0.012 27.8 7.4 101 505-606 175-286 (405)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=37.85 E-value=98 Score=27.28 Aligned_cols=29 Identities=28% Similarity=0.147 Sum_probs=12.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHh
Q 007037 440 TSAAATGATTLNIFAMALANLIGGLFIVA 468 (620)
Q Consensus 440 aGaAGAgss~lvILIaGLAnLIAGAISMG 468 (620)
.+....+.+.....+.|+.-+++.+.--+
T Consensus 100 ~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~ 128 (222)
T d1iwga8 100 LAATFRGLTNDVYFQVGLLTTIGLSAKNA 128 (222)
T ss_dssp HHHHHTTCCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhcccccchhhhhhhHH
Confidence 33333444444444455554444444333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.68 E-value=2.2e+02 Score=24.89 Aligned_cols=15 Identities=13% Similarity=-0.285 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhh-hhh
Q 007037 458 ANLIGGLFIVAH-NLR 472 (620)
Q Consensus 458 AnLIAGAISMG~-eYL 472 (620)
+..++.++.+-. +++
T Consensus 67 ~~~~~~~~~~~~~G~l 82 (447)
T d1pw4a_ 67 GISIAYGFSKFIMGSV 82 (447)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 333444444333 455
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=21.36 E-value=1.2e+02 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 570 VKTVLYHLSIGFMTSGLSYVFGDLIKK 596 (620)
Q Consensus 570 irSgLrmLlIGllAAaiSYlIG~Lf~~ 596 (620)
+++...++.+++++++++.++|.++..
T Consensus 46 ~~~l~~Sl~~a~~s~~i~~~lg~~~a~ 72 (248)
T d3d31c1 46 ISSIFLSLYAGFLATLLALLLGAPTGY 72 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444333333333333
No 4
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=19.63 E-value=28 Score=33.57 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 007037 539 KIAAVGGSSLACIFLLAIGKAHNQ 562 (620)
Q Consensus 539 af~iSIavSlvaLfLLG~~KAkvS 562 (620)
+++++.+++.+++++|++..+.+.
T Consensus 233 slaag~~As~vva~~FS~il~~la 256 (297)
T d1a87a_ 233 SWIIGGVVAGVAISLFGAVLSFLP 256 (297)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHh
Confidence 456666666777778887777554
No 5
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=18.46 E-value=17 Score=28.18 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=8.4
Q ss_pred CCCCCc-cceee
Q 007037 194 CPNCNS-CITRR 204 (620)
Q Consensus 194 CPnC~s-CITrr 204 (620)
||||.| |-|-.
T Consensus 24 CpnC~s~~~S~~ 35 (67)
T d1ryqa_ 24 CPVCGSRDLSEE 35 (67)
T ss_dssp CTTTCCCCEESC
T ss_pred CCCCcCCcCCCC
Confidence 999975 77653
No 6
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.79 E-value=15 Score=35.27 Aligned_cols=77 Identities=23% Similarity=0.249 Sum_probs=55.6
Q ss_pred hhhhhhccccccccHHHhhhhhhc---cccccccccccchhhhhhhhhccCCCcccccccccccch-hhhhhHHHHhhhc
Q 007037 112 SSVLEAKYKDEELHMEEANKLQIQ---SNCRTEIFNHQISEEKSEILEHFDNKSGVVDEDYFDQES-TEIIDVEGVLKKQ 187 (620)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~-~e~~d~E~vl~kQ 187 (620)
++.-|-|.|-..--+++.|..||| .=||++. .+++|.-+++-.|-| |-.++++..-+ .-.|.|--+|.+|
T Consensus 187 ~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~---~l~~~~k~KIslFcn---V~~~~VI~~~Dv~sIYeVPl~l~~q 260 (273)
T d2vo1a1 187 SSTGEQKTKPTQNSVRELRGLGLSPDLVVCRCSN---PLDTSVKEKISMFCH---VEPEQVICVHDVSSIYRVPLLLEEQ 260 (273)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHTCCCSEEEEECSS---CCCHHHHHHHHHHTT---SCGGGEEEECCCSSGGGHHHHHHHT
T ss_pred ccchhhcccchhHHHHHHHHcCCCCCeeeeccCC---CCCHHHHHHHHHhcC---CChhhEEEcCCcccHHHHHHHHHHC
Confidence 456788999999999999999999 6799874 456666666556654 32444544333 3469999999999
Q ss_pred ccccccC
Q 007037 188 STHDLYC 194 (620)
Q Consensus 188 ~thdlyC 194 (620)
.-|+..|
T Consensus 261 gl~~~i~ 267 (273)
T d2vo1a1 261 GVVDYFL 267 (273)
T ss_dssp THHHHHH
T ss_pred CcHHHHH
Confidence 9888654
No 7
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=14.65 E-value=7.7 Score=26.24 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=18.6
Q ss_pred ccCCCCCccceeeEEEeeccCCCC
Q 007037 192 LYCPNCNSCITRRVILVRKKPKIP 215 (620)
Q Consensus 192 lyCPnC~sCITrrVIL~krkr~~~ 215 (620)
.-|+-|+.|-+||=.|-|--.|.|
T Consensus 2 f~C~~C~R~FaRrDLlLRH~qKlH 25 (31)
T d2adra2 2 YPCGLCNRAFTRRDLLIRHAQKIH 25 (31)
T ss_dssp EECTTTCCEESSHHHHHHHHTTTS
T ss_pred cccccccchhhHHHHHHHHHHHHh
Confidence 359999999999987776655544
No 8
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.65 E-value=22 Score=33.98 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=57.7
Q ss_pred cccccchhhhhhccccccccHHHhhhhhhc---cccccccccccchhhhhhhhhccCCCcccccccccccch-hhhhhHH
Q 007037 106 YYPALESSVLEAKYKDEELHMEEANKLQIQ---SNCRTEIFNHQISEEKSEILEHFDNKSGVVDEDYFDQES-TEIIDVE 181 (620)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~n~~~~~e~s~~~~~~~~~~~~~~~~~~~~~~-~e~~d~E 181 (620)
+-|-+ .+.-|-|.|-..--|++.|..||| .-||.+. .+++|.-+++-.|-| |-.++++.-.+ .-.|+|-
T Consensus 176 lvP~l-~~~gE~KTKPTQhSVkeLrs~GIqPDilvcRse~---~l~~~~k~KIslFcn---V~~~~VI~~~Dv~sIYeVP 248 (266)
T d1s1ma2 176 LVPYM-AASGEVKTKPTQHSVKELLSIGIQPDILICRSDR---AVPANERAKIALFCN---VPEKAVISLKDVDSIYKIP 248 (266)
T ss_dssp ECCEE-TTTTEECCHHHHHHHHHHHTTTCCCSEEEEEESS---CCCHHHHHHHHHTTC---CCSSCEEEEECCSCGGGHH
T ss_pred cceee-ccccccccchHHHHHHHHHhcCCCCCeEeecccc---CCCHHHHHHHHhhcC---CChhhEEEcCCCchHHHHH
Confidence 44433 456788999999999999999999 6799764 456666666556633 32444444333 3468999
Q ss_pred HHhhhcccccccC
Q 007037 182 GVLKKQSTHDLYC 194 (620)
Q Consensus 182 ~vl~kQ~thdlyC 194 (620)
.+|.+|.-|+..|
T Consensus 249 l~l~~qgl~~~I~ 261 (266)
T d1s1ma2 249 GLLKSQGLDDYIC 261 (266)
T ss_dssp HHHHHTTHHHHHH
T ss_pred HHHHHCCcHHHHH
Confidence 9999999988755
No 9
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.29 E-value=1.7e+02 Score=25.11 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHhhhhhhHhhhhccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007037 515 YIIFGLIPPVVYGFSFHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTVLYHLSIGFMTSGLSYVFGDLI 594 (620)
Q Consensus 515 FiIGGLIPLLPY~fs~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSgLrmLlIGllAAaiSYlIG~Lf 594 (620)
.++..++.++..++.. ..+.-....-....+-+.-+...... ..++++....+.++++++.++.++|..+
T Consensus 3 l~~~~~l~~~~~~~~~-------f~~~p~~~~~~~s~~~~~n~~~~~~~---~~~~~~~~nSl~~~~~~~~i~~i~g~~l 72 (252)
T d2onkc1 3 LLFSALLALLSSIILL-------FVLLPVAATVTLQLFNFDEFLKAASD---PAVWKVVLTTYYAALISTLIAVIFGTPL 72 (252)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTTTTHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHcCC
Q 007037 595 KKLAEQLHL 603 (620)
Q Consensus 595 ~~lL~k~g~ 603 (620)
..++.+...
T Consensus 73 a~~l~~~~~ 81 (252)
T d2onkc1 73 AYILARKSF 81 (252)
T ss_dssp HHHHHSCCC
T ss_pred HHHHHHhcc
No 10
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.13 E-value=1.7e+02 Score=27.77 Aligned_cols=101 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhhc-----------cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 007037 505 WVHATLVFLSYIIFGLIPPVVYGFS-----------FHGSDNRDFKIAAVGGSSLACIFLLAIGKAHNQKPPNRSYVKTV 573 (620)
Q Consensus 505 ~~aALvSfLSFiIGGLIPLLPY~fs-----------~~~s~~~d~af~iSIavSlvaLfLLG~~KAkvS~~t~~s~irSg 573 (620)
+.+++...+.-++.-++++.||.+. ...-...-.-+...++..++.+++.-.....+.+.+..+++|..
T Consensus 175 ~~~~l~~v~~kii~~im~laPigvf~l~a~~~~~~g~~~l~~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~p~~~~~~~ 254 (405)
T d2nwwa1 175 AINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHA 254 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007037 574 LYHLSIGFMTSGLSYVFGDLIKKLAEQLHLFDS 606 (620)
Q Consensus 574 LrmLlIGllAAaiSYlIG~Lf~~lL~k~g~~~~ 606 (620)
...+++++.++--+-.+-..++.. +|+|..+.
T Consensus 255 ~~~~~~Af~T~SS~atlP~~~~~~-~~~gv~~~ 286 (405)
T d2nwwa1 255 KDAMLTAFVTRSSSGTLPVTMRVA-KEMGISEG 286 (405)
T ss_dssp HHHHHHHHHHCCTGGGHHHHHHHH-HTTTCCTT
T ss_pred cchhheeeeccccccccHHHHHHH-HHcCCCcc
Done!