Query 007038
Match_columns 620
No_of_seqs 344 out of 2297
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 18:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09525 lacZ beta-D-galactosi 100.0 4E-152 9E-157 1340.2 68.0 577 1-603 298-1026(1027)
2 PRK10340 ebgA cryptic beta-D-g 100.0 6E-150 1E-154 1324.8 69.3 584 1-606 282-1002(1021)
3 COG3250 LacZ Beta-galactosidas 100.0 1.3E-75 2.9E-80 666.2 29.0 451 1-487 249-807 (808)
4 PF02929 Bgal_small_N: Beta ga 100.0 3.9E-74 8.5E-79 591.2 21.1 263 324-602 10-276 (276)
5 PRK10150 beta-D-glucuronidase; 100.0 2.7E-63 5.9E-68 564.9 34.7 305 1-325 241-597 (604)
6 PF02836 Glyco_hydro_2_C: Glyc 100.0 4.4E-57 9.5E-62 471.9 26.6 287 39-325 1-298 (298)
7 KOG2230 Predicted beta-mannosi 99.8 1.6E-18 3.5E-23 183.6 15.4 179 1-195 278-493 (867)
8 PF03198 Glyco_hydro_72: Gluca 99.7 1.6E-16 3.5E-21 161.8 17.6 219 37-268 9-281 (314)
9 PF00150 Cellulase: Cellulase 99.5 3.4E-13 7.4E-18 138.9 17.2 206 48-268 3-279 (281)
10 PF02449 Glyco_hydro_42: Beta- 99.3 2.8E-11 6.1E-16 130.7 15.3 227 71-321 7-369 (374)
11 PF01301 Glyco_hydro_35: Glyco 99.3 8.5E-11 1.8E-15 123.8 17.0 144 45-194 1-179 (319)
12 PLN03059 beta-galactosidase; P 99.3 1E-09 2.2E-14 125.6 24.8 186 38-234 29-256 (840)
13 COG3934 Endo-beta-mannanase [C 99.1 1.8E-10 4E-15 121.6 8.0 238 71-322 23-321 (587)
14 COG1874 LacA Beta-galactosidas 98.8 3.8E-08 8.1E-13 111.3 13.1 127 42-174 4-167 (673)
15 smart00633 Glyco_10 Glycosyl h 98.4 4E-06 8.6E-11 85.8 15.2 189 100-315 19-253 (254)
16 PF14488 DUF4434: Domain of un 98.2 2.5E-05 5.4E-10 74.6 13.1 118 69-194 15-160 (166)
17 KOG0496 Beta-galactosidase [Ca 98.2 5.6E-05 1.2E-09 84.2 17.4 149 36-192 17-196 (649)
18 PF13204 DUF4038: Protein of u 98.2 1.7E-05 3.7E-10 82.6 12.7 178 48-235 8-242 (289)
19 PF12876 Cellulase-like: Sugar 98.1 3.9E-06 8.4E-11 71.5 5.1 60 150-209 1-86 (88)
20 PF07745 Glyco_hydro_53: Glyco 98.0 2.4E-05 5.2E-10 82.4 10.4 185 78-265 28-295 (332)
21 PF00232 Glyco_hydro_1: Glycos 97.6 0.0001 2.2E-09 81.9 6.1 89 72-169 56-167 (455)
22 COG5309 Exo-beta-1,3-glucanase 97.5 0.0043 9.4E-08 62.3 16.5 188 65-269 54-284 (305)
23 PF00331 Glyco_hydro_10: Glyco 97.5 0.0008 1.7E-08 71.3 11.9 231 67-319 12-319 (320)
24 COG3867 Arabinogalactan endo-1 97.3 0.0089 1.9E-07 60.8 15.8 188 75-265 63-341 (403)
25 PF01229 Glyco_hydro_39: Glyco 96.8 0.0076 1.7E-07 67.6 10.9 232 72-319 37-359 (486)
26 TIGR03356 BGL beta-galactosida 96.1 0.022 4.7E-07 62.9 9.1 94 71-170 51-163 (427)
27 COG2730 BglC Endoglucanase [Ca 95.8 0.042 9.2E-07 60.2 9.7 111 76-191 75-221 (407)
28 PRK13511 6-phospho-beta-galact 95.2 0.074 1.6E-06 59.4 9.2 92 72-170 52-162 (469)
29 PRK15014 6-phospho-beta-glucos 95.2 0.064 1.4E-06 59.9 8.5 90 72-169 67-179 (477)
30 TIGR01233 lacG 6-phospho-beta- 94.8 0.12 2.5E-06 57.8 9.2 90 71-170 50-161 (467)
31 COG3693 XynA Beta-1,4-xylanase 94.6 3.1 6.7E-05 43.6 17.9 205 99-322 84-343 (345)
32 COG2723 BglB Beta-glucosidase/ 93.7 0.28 6E-06 53.9 8.9 91 72-170 57-170 (460)
33 COG3534 AbfA Alpha-L-arabinofu 93.5 0.64 1.4E-05 50.4 11.1 103 71-194 45-212 (501)
34 PRK09852 cryptic 6-phospho-bet 93.4 0.28 6.2E-06 54.7 8.6 93 71-169 68-181 (474)
35 PRK09589 celA 6-phospho-beta-g 92.8 0.43 9.2E-06 53.4 8.9 91 71-169 64-177 (476)
36 PLN02998 beta-glucosidase 92.7 0.35 7.7E-06 54.3 8.2 91 71-169 79-191 (497)
37 PLN02814 beta-glucosidase 92.6 0.42 9.1E-06 53.8 8.7 93 72-170 75-187 (504)
38 PLN02849 beta-glucosidase 92.6 0.5 1.1E-05 53.2 9.2 92 72-169 77-188 (503)
39 PRK09593 arb 6-phospho-beta-gl 91.9 0.65 1.4E-05 52.0 9.0 91 71-169 70-183 (478)
40 KOG2024 Beta-Glucuronidase GUS 89.9 0.18 4E-06 50.7 2.1 96 23-118 80-196 (297)
41 PF03659 Glyco_hydro_71: Glyco 82.2 3.7 8E-05 44.7 7.2 76 71-163 14-96 (386)
42 PF01120 Alpha_L_fucos: Alpha- 77.3 33 0.00072 36.7 12.6 117 76-194 93-244 (346)
43 PF00332 Glyco_hydro_17: Glyco 76.1 32 0.00069 36.3 11.8 96 57-172 2-98 (310)
44 PF14871 GHL6: Hypothetical gl 75.6 15 0.00033 33.7 8.1 77 77-154 3-123 (132)
45 TIGR02635 RhaI_grampos L-rhamn 65.6 2.1E+02 0.0045 31.2 21.7 191 64-263 30-239 (378)
46 TIGR01233 lacG 6-phospho-beta- 60.5 30 0.00065 38.7 8.1 79 227-322 368-463 (467)
47 KOG0626 Beta-glucosidase, lact 58.1 38 0.00082 38.1 8.1 92 72-169 89-202 (524)
48 cd00019 AP2Ec AP endonuclease 54.6 82 0.0018 32.2 9.7 85 73-172 84-184 (279)
49 COG2876 AroA 3-deoxy-D-arabino 53.6 93 0.002 32.0 9.3 64 45-117 39-116 (286)
50 PF12891 Glyco_hydro_44: Glyco 51.4 16 0.00036 36.8 3.7 55 135-192 101-176 (239)
51 PRK13511 6-phospho-beta-galact 50.6 46 0.00099 37.3 7.5 79 227-322 369-465 (469)
52 TIGR03234 OH-pyruv-isom hydrox 49.0 1.4E+02 0.0031 29.9 10.4 100 74-193 84-202 (254)
53 PRK09856 fructoselysine 3-epim 48.9 2E+02 0.0043 29.2 11.5 86 74-164 13-111 (275)
54 PLN02998 beta-glucosidase 48.7 37 0.0008 38.3 6.4 82 228-322 394-487 (497)
55 PLN02361 alpha-amylase 48.2 53 0.0012 36.0 7.3 68 47-119 7-98 (401)
56 PLN02849 beta-glucosidase 47.9 50 0.0011 37.3 7.3 81 227-322 386-482 (503)
57 smart00812 Alpha_L_fucos Alpha 47.3 2.6E+02 0.0057 30.5 12.5 111 77-189 84-226 (384)
58 PRK09852 cryptic 6-phospho-bet 47.0 67 0.0014 36.1 8.0 84 226-321 365-467 (474)
59 COG0296 GlgB 1,4-alpha-glucan 46.7 31 0.00066 39.9 5.3 46 72-117 163-234 (628)
60 PLN02814 beta-glucosidase 46.6 39 0.00085 38.2 6.1 82 226-322 387-482 (504)
61 PRK09589 celA 6-phospho-beta-g 45.2 80 0.0017 35.4 8.3 84 226-321 367-470 (476)
62 cd08574 GDPD_GDE_2_3_6 Glycero 44.5 1.9E+02 0.0042 29.3 10.4 77 94-193 111-187 (252)
63 PF00703 Glyco_hydro_2: Glycos 43.1 18 0.00038 30.8 2.2 17 21-37 94-110 (110)
64 PF00128 Alpha-amylase: Alpha 42.2 27 0.00058 35.7 3.8 46 74-119 4-74 (316)
65 PRK12331 oxaloacetate decarbox 42.0 1.1E+02 0.0024 34.1 8.6 80 32-116 36-142 (448)
66 PF11790 Glyco_hydro_cc: Glyco 41.3 98 0.0021 31.2 7.6 63 201-265 136-211 (239)
67 cd06570 GH20_chitobiase-like_1 41.0 2E+02 0.0044 30.3 10.2 53 71-123 15-94 (311)
68 PRK15014 6-phospho-beta-glucos 39.6 90 0.0019 35.1 7.6 87 226-321 368-471 (477)
69 PRK13209 L-xylulose 5-phosphat 39.3 1.6E+02 0.0035 30.0 9.0 97 74-193 99-212 (283)
70 smart00642 Aamy Alpha-amylase 38.3 72 0.0016 30.3 5.7 48 72-119 17-92 (166)
71 PRK13398 3-deoxy-7-phosphohept 38.0 1.8E+02 0.0038 30.1 8.9 61 49-118 25-99 (266)
72 PF11211 DUF2997: Protein of u 37.0 32 0.00069 25.8 2.4 18 424-441 1-18 (48)
73 PRK09593 arb 6-phospho-beta-gl 36.5 1E+02 0.0022 34.7 7.4 87 226-321 368-471 (478)
74 PF14221 DUF4330: Domain of un 36.4 93 0.002 29.7 6.2 49 7-58 114-162 (168)
75 PRK13397 3-deoxy-7-phosphohept 36.1 77 0.0017 32.4 5.8 47 71-117 26-86 (250)
76 KOG0626 Beta-glucosidase, lact 35.3 1.1E+02 0.0024 34.5 7.3 92 215-322 396-508 (524)
77 cd08582 GDPD_like_2 Glyceropho 35.2 3.3E+02 0.0072 26.9 10.4 129 33-193 24-158 (233)
78 PF01261 AP_endonuc_2: Xylose 35.1 1.8E+02 0.0039 27.6 8.2 96 73-183 70-183 (213)
79 TIGR02631 xylA_Arthro xylose i 34.2 6.4E+02 0.014 27.4 14.2 192 64-268 22-246 (382)
80 PF14100 PmoA: Methane oxygena 34.1 5.4E+02 0.012 26.5 20.3 48 563-615 218-266 (271)
81 PLN02784 alpha-amylase 33.8 1.5E+02 0.0032 35.8 8.3 69 47-119 498-590 (894)
82 PRK12360 4-hydroxy-3-methylbut 33.8 2.1E+02 0.0047 29.7 8.7 52 50-116 31-97 (281)
83 COG0106 HisA Phosphoribosylfor 32.8 2.7E+02 0.0058 28.3 8.9 109 77-197 87-200 (241)
84 PRK12595 bifunctional 3-deoxy- 32.7 1.8E+02 0.0039 31.4 8.3 60 49-117 116-189 (360)
85 KOG0098 GTPase Rab2, small G p 32.5 1.9E+02 0.0041 28.4 7.4 87 29-117 38-148 (216)
86 smart00481 POLIIIAc DNA polyme 32.1 1.2E+02 0.0026 23.6 5.3 41 76-116 17-60 (67)
87 PRK14042 pyruvate carboxylase 31.6 2.1E+02 0.0046 33.1 9.0 59 53-116 80-142 (596)
88 PRK14565 triosephosphate isome 31.4 4.8E+02 0.01 26.5 10.6 105 80-196 78-197 (237)
89 cd06565 GH20_GcnA-like Glycosy 30.3 1.2E+02 0.0025 31.9 6.3 55 68-122 11-85 (301)
90 cd08562 GDPD_EcUgpQ_like Glyce 30.2 3.2E+02 0.007 26.8 9.3 74 95-193 85-159 (229)
91 PRK09856 fructoselysine 3-epim 30.1 3E+02 0.0065 27.8 9.3 101 73-193 89-206 (275)
92 PF02786 CPSase_L_D2: Carbamoy 29.9 95 0.0021 30.8 5.2 82 80-165 6-89 (211)
93 PF01261 AP_endonuc_2: Xylose 29.8 2.1E+02 0.0044 27.2 7.6 37 80-116 1-46 (213)
94 PLN00196 alpha-amylase; Provis 29.8 1.8E+02 0.0038 32.3 7.8 65 52-119 25-114 (428)
95 PF05913 DUF871: Bacterial pro 29.3 69 0.0015 34.6 4.4 47 72-118 12-68 (357)
96 TIGR03356 BGL beta-galactosida 29.1 85 0.0018 34.7 5.2 24 74-97 94-118 (427)
97 cd08556 GDPD Glycerophosphodie 28.7 2.7E+02 0.0059 26.0 8.2 71 96-193 48-118 (189)
98 cd00019 AP2Ec AP endonuclease 28.1 4.5E+02 0.0098 26.7 10.2 88 70-167 7-109 (279)
99 TIGR00542 hxl6Piso_put hexulos 27.9 4.4E+02 0.0096 26.8 10.1 97 74-193 94-207 (279)
100 PRK01060 endonuclease IV; Prov 27.7 5E+02 0.011 26.3 10.4 81 76-165 14-111 (281)
101 cd02742 GH20_hexosaminidase Be 27.6 1.1E+02 0.0023 32.1 5.5 54 70-123 12-98 (303)
102 PRK01045 ispH 4-hydroxy-3-meth 27.1 3E+02 0.0065 28.9 8.5 52 50-116 30-94 (298)
103 cd06568 GH20_SpHex_like A subg 25.5 4.8E+02 0.01 27.7 10.0 54 70-123 14-101 (329)
104 cd08563 GDPD_TtGDE_like Glycer 25.1 4.9E+02 0.011 25.6 9.5 73 96-193 88-160 (230)
105 PF03162 Y_phosphatase2: Tyros 24.6 3.3E+02 0.0071 25.8 7.7 75 77-162 22-97 (164)
106 PRK12677 xylose isomerase; Pro 24.5 9.3E+02 0.02 26.2 13.7 100 64-165 21-136 (384)
107 PF13380 CoA_binding_2: CoA bi 24.0 1.8E+02 0.0039 25.8 5.4 46 71-116 63-108 (116)
108 COG1099 Predicted metal-depend 24.0 5.4E+02 0.012 26.0 9.0 22 77-98 14-36 (254)
109 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.8 2.5E+02 0.0054 29.0 7.2 45 71-115 88-136 (275)
110 COG5520 O-Glycosyl hydrolase [ 23.7 9.6E+02 0.021 26.0 12.3 151 85-235 77-272 (433)
111 PRK09936 hypothetical protein; 23.7 7.3E+02 0.016 26.0 10.3 95 70-170 34-145 (296)
112 smart00518 AP2Ec AP endonuclea 22.5 4.2E+02 0.0092 26.7 8.7 80 76-164 12-105 (273)
113 KOG2233 Alpha-N-acetylglucosam 22.5 1.1E+03 0.025 26.5 14.1 61 134-194 213-281 (666)
114 PRK00042 tpiA triosephosphate 21.3 4.2E+02 0.0091 27.0 8.2 62 49-118 54-127 (250)
115 PLN02429 triosephosphate isome 21.2 7.8E+02 0.017 26.1 10.2 38 80-117 140-187 (315)
116 PF13663 DUF4148: Domain of un 20.8 1.1E+02 0.0023 23.8 2.9 30 70-99 18-48 (58)
117 PRK13210 putative L-xylulose 5 20.6 5.1E+02 0.011 26.2 8.9 73 75-153 17-102 (284)
118 TIGR01531 glyc_debranch glycog 20.6 79 0.0017 39.9 3.1 48 43-93 102-151 (1464)
119 PRK04302 triosephosphate isome 20.6 7.6E+02 0.017 24.3 9.8 90 80-196 78-181 (223)
120 PRK14040 oxaloacetate decarbox 20.5 4.3E+02 0.0094 30.6 8.9 59 53-116 81-143 (593)
121 TIGR02804 ExbD_2 TonB system t 20.4 3.3E+02 0.0072 24.1 6.5 16 38-53 53-69 (121)
122 PRK08673 3-deoxy-7-phosphohept 20.3 2.6E+02 0.0056 30.0 6.6 59 50-117 92-164 (335)
123 PF04015 DUF362: Domain of unk 20.3 2.8E+02 0.006 26.9 6.5 50 64-113 13-64 (206)
124 PF05706 CDKN3: Cyclin-depende 20.1 3.9E+02 0.0084 25.6 7.0 78 74-166 58-142 (168)
125 PRK12313 glycogen branching en 20.1 1.9E+02 0.0042 33.6 6.2 47 72-118 168-241 (633)
126 PF02638 DUF187: Glycosyl hydr 20.0 1.7E+02 0.0036 30.9 5.1 44 72-115 17-88 (311)
No 1
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=4.1e-152 Score=1340.23 Aligned_cols=577 Identities=47% Similarity=0.817 Sum_probs=531.0
Q ss_pred CCcCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 007038 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (620)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl 80 (620)
+|+|||+|+|+||+|+++|.+++|+++|+++++||||+|++++++|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 298 ~p~lWs~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di 377 (1027)
T PRK09525 298 NPKLWSAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDI 377 (1027)
T ss_pred CCCcCCCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 007038 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (620)
Q Consensus 81 ~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (620)
++||++|+|+||+||||++++||++|||+|||||+|+++++||+.+... +.++|.|.+++++++++||+|+||||||
T Consensus 378 ~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~---~~~dp~~~~~~~~~~~~mV~RdrNHPSI 454 (1027)
T PRK09525 378 LLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNR---LSDDPRWLPAMSERVTRMVQRDRNHPSI 454 (1027)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccC---CCCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9999999999999999999999999999999999999999999753222 3678999999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHhCCCCeEecCCCCCCCCCcceecCCCCcHH-----------HHHHHHhCCCCCCcE
Q 007038 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVW-----------DIVMIAKDPTETRPL 229 (620)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~-----------~~~~~~~~~~~~kP~ 229 (620)
|+||+|||++.+.++.+|++++|++||||||+|++++.....+|+++.||++++ .+++|++.+..+||+
T Consensus 455 i~WSlgNE~~~g~~~~~l~~~~k~~DptRpV~y~~~~~~~~~~Dv~~~my~~~~~~~~~~~~~~~~~~~~~~~~~~~kP~ 534 (1027)
T PRK09525 455 IIWSLGNESGHGANHDALYRWIKSNDPSRPVQYEGGGADTAATDIICPMYARVDEDQPFPAVPKWSIKKWISLPGETRPL 534 (1027)
T ss_pred EEEeCccCCCcChhHHHHHHHHHhhCCCCcEEECCCCCCCCccccccCCCCCccccccccccchHHHHHHHhcCCCCCCE
Confidence 999999999999999999999999999999999976544567999999998874 577888765557999
Q ss_pred EEeccCCccCCCCccHHHHHHHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCC
Q 007038 230 ILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTP 309 (620)
Q Consensus 230 i~~Eygh~~gns~g~~~~y~~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~p 309 (620)
|+|||||+|||+.|++++||++++++|.++|||||+|+|||+.+.+++|+.||+||||||+.|||+|||+||||.+||+|
T Consensus 535 i~cEY~Hamgn~~g~l~~yw~~~~~~~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~nFc~dGlv~~dR~p 614 (1027)
T PRK09525 535 ILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGGFIWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDRQFCMNGLVFPDRTP 614 (1027)
T ss_pred EEEechhcccCcCccHHHHHHHHhcCCCeeEEeeEeccCcceeeECCCCCEEEEECCcCCCCCCCCCceeceeECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhcccEEEEEcC---CeE------------------------------------------------------
Q 007038 310 HPALHEVKYVYQAIKVSLKK---GTL------------------------------------------------------ 332 (620)
Q Consensus 310 k~~~~e~k~~~~~~~~~~~~---~~~------------------------------------------------------ 332 (620)
+|+++|+|++||||+|+..+ ++|
T Consensus 615 ~p~~~E~K~v~qpv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~~~~~G~~~~~g~~~~~~~p~~~~~i~l~~~~~~~~ 694 (1027)
T PRK09525 615 HPALYEAKHAQQFFQFSLLSTTPLTIEVTSEYLFRHSDNELLHWSVALDGKPLASGEVPLDLAPQGSQRITLPELPQPES 694 (1027)
T ss_pred CccHHHHHhhcCcEEEEEccCCCcEEEEEEcccCCcccccEEEEEEEECCEEEEeeeEccccCCCCceEEecCCCCCCCC
Confidence 99999999999999997643 223
Q ss_pred ------------------------------------------------------------------------------EE
Q 007038 333 ------------------------------------------------------------------------------KV 334 (620)
Q Consensus 333 ------------------------------------------------------------------------------~~ 334 (620)
.+
T Consensus 695 ~~e~~l~~~~~~~~~~~~a~~g~~va~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~G~l~s~~~ 774 (1027)
T PRK09525 695 AGQLWLNVEVVQPNATAWSEAGHRSAWQQWRLPEPLSLPLPTASHAAPQLTQDEQDFCIELGNQRWQFNRQSGLLSQWWV 774 (1027)
T ss_pred CceEEEEEEEEECCCCcccCCCCEEEEEEEEeccCcccccccccCCCceEEEcCCeEEEEECCEEEEEECCCceEEEEEE
Confidence 45
Q ss_pred CCEeeeecCCCCCeeeecCCCCCCCCCccc------chhhHhcCccceeEEEEEEEEEEeCCceEEEEEEEEeccccccc
Q 007038 335 EGVSVMKRGIFPCFWRAPTDNDKGGGESSY------YSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMS 408 (620)
Q Consensus 335 ~g~~ll~~~~~~~~wRaptdND~~~~~~~~------~~~W~~ag~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 408 (620)
+|+++|.++|+|||||||||||+|.++... ...|++||+++++.++.++++...++. ++|++++.+...
T Consensus 775 ~g~~~l~~~~~~~~wRaptdND~g~~~~~~~~~~~~~~~w~~ag~~~~~~~~~~~~~~~~~~~-v~v~~~~~~~~~---- 849 (1027)
T PRK09525 775 GGKEQLLTPLRDQFTRAPLDNDIGVSEATRIDPNAWVERWKAAGLYQLEARLLQCDADTLADA-VLITTEHAYQHQ---- 849 (1027)
T ss_pred CCEEeeccCCcCceECCCcccCcCccccccccccchHHHHHHcCCccceeEEEEEEEEecCCe-EEEEEEEEeecC----
Confidence 789999999999999999999998755322 368999999999999998887665554 467776555221
Q ss_pred hhhhhhhccceeEEEEEEEEecCceEEEEEEEeeCCCCCCCcceeeEEEEecCCCCceEEEeCCCCCCccchhcCcccee
Q 007038 409 SLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVDV 488 (620)
Q Consensus 409 ~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~~a~~G~ 488 (620)
....++++++|+|+++|.|.|++++.+. +.+|.||||||+|.||++|++|+||||||+|||+|||+||++|+
T Consensus 850 -------~~~~~~~~~~y~i~~~G~i~v~~~~~~~-~~~p~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~Drk~~a~~G~ 921 (1027)
T PRK09525 850 -------GKTLFISRKTYRIDGQGEMTIDVDVEVA-SDLPPPARIGLTCQLAQVAERVSWLGLGPHENYPDRLLAACFGR 921 (1027)
T ss_pred -------CCccEEEEEEEEEeCCCEEEEEEEEEeC-CCCCCCceEEEEEECCccccccEEECCCCCCChhhhhhcCcEeE
Confidence 1223678899999999999999999998 77899999999999999999999999999999999999999999
Q ss_pred eccccccccccccCccCCCCccceeEEEEeeCCCceEEEEecCCCCCeeEEEecCCHHHHhccCCCCCCCCCCeEEEEEc
Q 007038 489 YEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLD 568 (620)
Q Consensus 489 y~~tv~~~~~~Yv~PQE~Gnr~dvrw~~l~~~~g~gl~i~~~~~~~~~~fsa~~yt~~~l~~a~H~~eL~~~~~~~l~iD 568 (620)
|+++|++||+||++|||||||+||||++|+ ||.|+ + .|+|||+|||+++|++|+|++||++++.|+||||
T Consensus 922 y~~~V~~~~~pYv~PQEnGnr~dvrw~~l~-----~l~v~---~--~~~fsa~~yt~~~L~~a~H~~eL~~~~~~~l~iD 991 (1027)
T PRK09525 922 WDLPLSDMHTPYIFPSENGLRCGTRELNYG-----RHQIR---G--DFHFNISRYSQQQLMETSHRHLLQAEEGTWLNID 991 (1027)
T ss_pred ECCcHHHhCCCCCCccCCCCccceEEEEEc-----CeEEE---e--eeeEEecCCCHHHHHhCcCHhhCCCCCCEEEEEC
Confidence 999999999999999999999999999994 58887 4 3999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCccccCccEEEEEEEEe
Q 007038 569 HKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLSP 603 (620)
Q Consensus 569 ~~q~GvGg~~ScGp~~~~~Y~l~~~~~~~~f~i~p 603 (620)
++||||||+|||||.||++|+|+.++|+|+|+|+-
T Consensus 992 ~~q~GvGg~~S~g~~~~~~y~~~~~~~~~~f~~~~ 1026 (1027)
T PRK09525 992 GFHMGVGGDDSWSPSVHPEFLLSAGRYHYQLTWCQ 1026 (1027)
T ss_pred cccCCCCCCCCCCCCCCHHHCCCCCcEEEEEEEEe
Confidence 99999999999999999999999999999999863
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=6.1e-150 Score=1324.81 Aligned_cols=584 Identities=35% Similarity=0.642 Sum_probs=540.4
Q ss_pred CCcCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 007038 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (620)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl 80 (620)
+|+|||+|+|+||+|+++|.+.+|+++|+++++||||+|++++++|+|||+||+|||+|+|+++|..|++++++.|++||
T Consensus 282 ~p~lWs~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl 361 (1021)
T PRK10340 282 QPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDI 361 (1021)
T ss_pred CCCcCCCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHH
Confidence 69999999999999999998778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 007038 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (620)
Q Consensus 81 ~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (620)
++||++|+|+||+||||++++|||+|||+|||||+|+++++||+........+.++|.|.+++++++++||+|+||||||
T Consensus 362 ~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNHPSI 441 (1021)
T PRK10340 362 QLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNHPSI 441 (1021)
T ss_pred HHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999999999999999999997532223345689999999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHhCCCCeEecCCCCCCCCCcceecCCCCcHHHHHHHHhCCCCCCcEEEeccCCccCC
Q 007038 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (620)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~~gn 240 (620)
++||+|||++.|.++.+|++++|++||||||+|+++.. ...+||+|.||++++.+.++.+.. ++||+|+|||+|+|||
T Consensus 442 i~WslGNE~~~g~~~~~~~~~~k~~DptR~v~~~~~~~-~~~~Dv~~~~Y~~~~~~~~~~~~~-~~kP~i~~Ey~hamgn 519 (1021)
T PRK10340 442 IIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRD-AEVVDVISTMYTRVELMNEFGEYP-HPKPRILCEYAHAMGN 519 (1021)
T ss_pred EEEECccCccccHHHHHHHHHHHHhCCCceEEeCCCcC-ccccceeccccCCHHHHHHHHhCC-CCCcEEEEchHhccCC
Confidence 99999999999999999999999999999999998643 567999999999999888776654 4799999999999999
Q ss_pred CCccHHHHHHHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhc
Q 007038 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (620)
Q Consensus 241 s~g~~~~y~~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~ 320 (620)
++|++++||++++++|.++|+|||+|+|||+..++++|..+|+||||||+.|+|++||+||||++||+|||+++|+|++|
T Consensus 520 ~~g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~~~~f~~~Glv~~dr~p~p~~~e~k~~~ 599 (1021)
T PRK10340 520 GPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPNNYNFCIDGLIYPDQTPGPGLKEYKQVI 599 (1021)
T ss_pred CCCCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCCCcCcccceeECCCCCCChhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcC---CeE-----------------------------------------------------------------
Q 007038 321 QAIKVSLKK---GTL----------------------------------------------------------------- 332 (620)
Q Consensus 321 ~~~~~~~~~---~~~----------------------------------------------------------------- 332 (620)
|||+|+..+ ++|
T Consensus 600 ~pv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~l~~dG~~~~~g~~~~~~i~p~~~~~v~l~~~~~~~~e~~l~~~~~~ 679 (1021)
T PRK10340 600 APVKIHALDLTRGELKVENKLWFTNLDDYTLHAEVRAEGETLASGQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTK 679 (1021)
T ss_pred ceEEEEEecCCCCEEEEEECccCCCccccEEEEEEEECCEEEEEeeeccCccCCCCceEEEecCCCCCCceEEEEEEEEE
Confidence 999998733 333
Q ss_pred --------------------------------------------------------------------EECCEeeeecCC
Q 007038 333 --------------------------------------------------------------------KVEGVSVMKRGI 344 (620)
Q Consensus 333 --------------------------------------------------------------------~~~g~~ll~~~~ 344 (620)
.++|++||.++|
T Consensus 680 ~~~~~wa~~g~~va~~Q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~fdk~tG~l~s~~~~g~~ll~~~~ 759 (1021)
T PRK10340 680 DSRTRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEEDRLSCTVRGYNFAITFSKVSGKLTSWQVNGESLLTREP 759 (1021)
T ss_pred CCCccccCCCcEEEEEEEEecccccccccccccCCCCeeEEecCCEEEEEeCCEEEEEECCcceEEEEEeCCeeeecCCC
Confidence 457899999999
Q ss_pred CCCeeeecCCCCCCCCCcccchhhHhcCccceeEEEEEEEEEEeCCceEEEEEEEEeccccccchhhhhhhccceeEEEE
Q 007038 345 FPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVI 424 (620)
Q Consensus 345 ~~~~wRaptdND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (620)
.|||||||||||++. ....|++||++.++.++.++++...++. ++|++++.+.+. .....+.+++
T Consensus 760 ~~nfwRAptDND~~~----~~~~W~~ag~~~l~~~~~~~~~~~~~~~-v~v~~~~~~~~~----------~~~~~~~~~~ 824 (1021)
T PRK10340 760 KINFFKPMIDNHKQE----YEGLWQPNHLQIMQEHLRDFAVEQSDGE-VLIISRTVIAPP----------VFDFGMRCTY 824 (1021)
T ss_pred ccceEeCCccCCcch----hhHHHHHcCCccceeEEEEEEEEeCCCe-EEEEEEEEecCC----------cccceeEEEE
Confidence 999999999999643 2367999999999999999887765454 477777776432 1234568899
Q ss_pred EEEEecCceEEEEEEEeeCCCCCCC-cceeeEEEEecCCCCceEEEeCCCCCCccchhcCccceeeccccccccccccCc
Q 007038 425 DYTIYGSGNVIVECNFKPNTSDLPP-LPRVGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVDVYEQIVGDMHVPYIVP 503 (620)
Q Consensus 425 ~Y~i~~~G~i~v~~~~~~~~~~~p~-lpRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~~a~~G~y~~tv~~~~~~Yv~P 503 (620)
+|+|+++|.|.|++++.+. +.+|. ||||||+|.||++|++|+||||||+|||+|||+||++|+|+++|++||+||++|
T Consensus 825 ~y~i~~~G~i~v~~~~~~~-~~~p~~lPRiG~~~~lp~~~~~v~wyGrGP~EnY~DRk~sa~~G~y~~~V~~~~~pYi~P 903 (1021)
T PRK10340 825 IYRIAADGQVNVALSGERY-GDYPHMIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANLIDIYRSTVDAMFENYPFP 903 (1021)
T ss_pred EEEEcCCCEEEEEEEEEEC-CCCCccccceEEEEEcCccccccEEECCCCCCCchhhhhhcceeeecCcHHHhcCCCCCc
Confidence 9999999999999999998 77888 799999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccceeEEEEeeCCCceEEEEecCCCCCeeEEEecCCHHHHhccCCCCCCCCCCeEEEEEccccccCCCCCCCCCC
Q 007038 504 GECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVKEDKIEVHLDHKHMGLGGDDSWTPC 583 (620)
Q Consensus 504 QE~Gnr~dvrw~~l~~~~g~gl~i~~~~~~~~~~fsa~~yt~~~l~~a~H~~eL~~~~~~~l~iD~~q~GvGg~~ScGp~ 583 (620)
||||||+||||++|++..|.||+|+ ++++|+|||+|||+++|++|+|++||++++.|+||||++||||| ++||||.
T Consensus 904 QEnGnr~dvrw~~l~~~~g~gl~v~---~~~~~~fsa~~ys~~~L~~a~H~~eL~~~~~~~l~iD~~q~GvG-~~SwGp~ 979 (1021)
T PRK10340 904 QNNGNRQHVRWTALTNRHGNGLLVV---PQRPINFSAWHYTQENIHAAQHTNELQKSDYITLNLDHQLLGLG-SNSWGSE 979 (1021)
T ss_pred cCCCCccceEEEEEECCCCCEEEEE---eCCCcEEEccCCCHHHHHhCcCHhhCCCCCCEEEEEcccccCCc-ccccCCC
Confidence 9999999999999999999999998 67789999999999999999999999999999999999999998 7799999
Q ss_pred CCCCccccCccEEEEEEEEeccC
Q 007038 584 VHDKYLVPAVAYSFSIRLSPLTA 606 (620)
Q Consensus 584 ~~~~Y~l~~~~~~~~f~i~p~~~ 606 (620)
||++|+|+.++|+|+|+|+|+..
T Consensus 980 ~~~~y~~~~~~~~~~f~l~p~~~ 1002 (1021)
T PRK10340 980 VLDSYRVWFRDFSYGFTLLPVSG 1002 (1021)
T ss_pred CCHHHCCCCCcEEEEEEEEEcCC
Confidence 99999999999999999999953
No 3
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-75 Score=666.16 Aligned_cols=451 Identities=45% Similarity=0.766 Sum_probs=385.8
Q ss_pred CCcCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 007038 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (620)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl 80 (620)
+|+||||++|+||+|+++|.+. |.++|.+..+||||+|+++++.|+||||||++||+|||+++|..|+++.++.|++||
T Consensus 249 ~p~lWsp~~P~LY~l~~~L~~~-~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl 327 (808)
T COG3250 249 NPKLWSPEDPYLYRLVVTLKDA-NTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDL 327 (808)
T ss_pred CcccCCCCCCceEEEEEEEEeC-CceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHH
Confidence 6999999999999999999985 488999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceE
Q 007038 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASI 160 (620)
Q Consensus 81 ~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSI 160 (620)
++||++|+|+|||||||++++||+||||+|||||+|+++++||+. +++.|.+.+.+++++||+|+||||||
T Consensus 328 ~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~---------~~~~~~k~~~~~i~~mver~knHPSI 398 (808)
T COG3250 328 KLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMP---------DDPEWRKEVSEEVRRMVERDRNHPSI 398 (808)
T ss_pred HHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCC---------CCcchhHHHHHHHHHHHHhccCCCcE
Confidence 999999999999999999999999999999999999999999863 78999999999999999999999999
Q ss_pred EEEecCCCCCCCccHHHHHHHHHHhCCCCeEecCCCCCCCCCcceecCCCCcHHHHHHHHhCCCCCCcEEEeccCCccCC
Q 007038 161 ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGN 240 (620)
Q Consensus 161 i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~~gn 240 (620)
||||+|||++.|.++..+..|+|+.||+|+++|++.. ...+|+.+.||...+....+... .+|.++|||.|+|+|
T Consensus 399 iiWs~gNE~~~g~~~~~~~~~~k~~d~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---p~p~~l~~~~~~~~n 473 (808)
T COG3250 399 IIWSLGNESGHGSNHWALYRWFKASDPTRPVQYEGRG--TEATDILSPMYERVDEILYFPGS---PRPLILCEYAHAMGN 473 (808)
T ss_pred EEEeccccccCccccHHHHHHHhhcCCccceeccCcc--ceeeecccchhhcCccccccCCC---CCCceeecchHhhcc
Confidence 9999999999999999999999999999999998875 46789999999987766555543 389999999999999
Q ss_pred CCccHHHHHHHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhc
Q 007038 241 SNGNIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVY 320 (620)
Q Consensus 241 s~g~~~~y~~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~ 320 (620)
+.++...||.++.+++.++|+|+|+|+|+++...++.|..+++++|++++.|++..||.+|++.+||.+.+..++.+..+
T Consensus 474 ~~~G~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~ 553 (808)
T COG3250 474 SYGGDYHYWGVFGEYPRLQGGFIWDWVDQRLIPIDETGNQAYAYGGDFGDYPNDRSFELNGLVFPDRQPNPGLKEAKVGT 553 (808)
T ss_pred CcCCceeeeehhccccccccceehhhcccccCcccccCccccccccccCCCccccchhcccccccccccCccchheeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEcC---C-eE----------------------------------------------------------------
Q 007038 321 QAIKVSLKK---G-TL---------------------------------------------------------------- 332 (620)
Q Consensus 321 ~~~~~~~~~---~-~~---------------------------------------------------------------- 332 (620)
+...|.... + .+
T Consensus 554 ~~~~f~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pg~~~~~~~~~~~~k~~~l~~r~~~~~~ 633 (808)
T COG3250 554 QFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALLGETLGSLEWQLNDVPPGASWSSLDEALRPKALYLTRRFTQPEL 633 (808)
T ss_pred eeeeeeccccCCceEEechhheeeeehhhhhhhhhccceEeeeEEEEeecCCCcccccccccccCCcceEEEEEEecccc
Confidence 999986533 1 11
Q ss_pred --------------------------------EECCEee-ee---cCCCC----CeeeecCCCCCCCCCcccchhhHhcC
Q 007038 333 --------------------------------KVEGVSV-MK---RGIFP----CFWRAPTDNDKGGGESSYYSRWRAAG 372 (620)
Q Consensus 333 --------------------------------~~~g~~l-l~---~~~~~----~~wRaptdND~~~~~~~~~~~W~~ag 372 (620)
..+|+.+ +. ..+.+ .|||+|+||. ....+...|+-+.
T Consensus 634 ~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~d~a~~~~~~~~~---~p~~~i~~w~~~~ 710 (808)
T COG3250 634 TAWSEAAADGQFTLSEVSAAPLLVEDERLLQVEGDGKRLQFEKQSGTLPPLLDKAFTRAPLDNI---DPNAWIEIWKLAE 710 (808)
T ss_pred chhhhhcccceeeecccccchhheeccceeEEeecCceEEeccccCcccccccccccccccccC---CCccceeeeehhh
Confidence 1122221 11 12334 7999999992 2334567788444
Q ss_pred ccceeEEEEEEEEEEeCCceEEEEEEEEeccccccchhhhhhhccceeEEEEEEEEecCceEEEEEEEeeCCCCCCCcce
Q 007038 373 IDSLVFLTKSCSIQNVTDYFVKIRVVYDGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPR 452 (620)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpR 452 (620)
.. ..+....+..... .+.+.+.+.++.. ..........|++.++|.+.|.+++... ..|+.++
T Consensus 711 ~~---~~~~~~~~~~~~~-~~l~~~~~~~~~s-----------~~~~~~~~~~~~~~~~~a~~v~~~~~~~--~~p~~~~ 773 (808)
T COG3250 711 LN---RLLLRGHVDFDAG-KVLILAQYGIESS-----------GKTEFGSFLIYRTAADGALLVKVDFERA--DLPDPAR 773 (808)
T ss_pred hh---HHHHhcccccccC-ceeecccceEEec-----------cccccceEEEEEEcCCcceEEEEecccc--cCCcchh
Confidence 43 2233333322222 2234444444221 1112445678999999999999999876 7888888
Q ss_pred eeEEEEecCCCCceEEEeCCCCCCccchhcCccce
Q 007038 453 VGVEFHLEQSMDKIKFYGRGPFECYPDRKAAAHVD 487 (620)
Q Consensus 453 iG~~~~lp~~~~~v~wyGrGP~EnY~DRk~~a~~G 487 (620)
+|..+.++..+.. +|||+||+|||+||..++..+
T Consensus 774 ~~~~~~~~~~~~~-~a~~~gp~~~~~~~~~a~~~~ 807 (808)
T COG3250 774 IGPGEQLAIKAEP-EALGLGPQENYPDRLLAACFD 807 (808)
T ss_pred hccCccccccccc-cccccCCCccccchhhhhhcc
Confidence 9999999999999 999999999999999998765
No 4
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=100.00 E-value=3.9e-74 Score=591.24 Aligned_cols=263 Identities=42% Similarity=0.766 Sum_probs=209.3
Q ss_pred EEEEcCCeE---EECCEeeeecCCCCCeeeecCCCCCCCCCcccchhhHhcCccceeEEEEEEEEEEeCCce-EEEEEEE
Q 007038 324 KVSLKKGTL---KVEGVSVMKRGIFPCFWRAPTDNDKGGGESSYYSRWRAAGIDSLVFLTKSCSIQNVTDYF-VKIRVVY 399 (620)
Q Consensus 324 ~~~~~~~~~---~~~g~~ll~~~~~~~~wRaptdND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 399 (620)
.|....|.+ .++|++||.++|.|||||||||||++.........|+.++++.+..++.++.+.+.++.. +.|++.+
T Consensus 10 ~Fdk~~G~l~s~~~~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~ag~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 89 (276)
T PF02929_consen 10 VFDKKTGTLTSYKYNGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKDAGLDRLVTRVRSVKVEESDGDVAVTVTARY 89 (276)
T ss_dssp EEETTTTCEEEEEETTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHHTTTTCEEEEEEEEEEEEEESESEEEEEEEE
T ss_pred EEECCCCeEEEEEECCEEeecCCCcccEEeCCCCCccccccchhHHHHHHcCccceeeEEeEEEEEecCCCceEEEEEEE
Confidence 344334544 889999999999999999999999998776666789999999999999888887665543 3455444
Q ss_pred EeccccccchhhhhhhccceeEEEEEEEEecCceEEEEEEEeeCCCCCCCcceeeEEEEecCCCCceEEEeCCCCCCccc
Q 007038 400 DGTPRVDMSSLTKLEKAKALFEIVIDYTIYGSGNVIVECNFKPNTSDLPPLPRVGVEFHLEQSMDKIKFYGRGPFECYPD 479 (620)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~~~p~lpRiG~~~~lp~~~~~v~wyGrGP~EnY~D 479 (620)
.. + .....+.++++|+|++||+|.|+++++|. +.+|.||||||+|.||++|++|+||||||+|||+|
T Consensus 90 ~~--~----------~~~~~~~~~~~y~i~~dG~i~v~~~~~~~-~~~p~lpRiGl~~~Lp~~~~~v~wyGrGP~EnY~D 156 (276)
T PF02929_consen 90 AA--P----------NKSWNFEVTITYTIYADGTIKVDMTFEPS-GDLPELPRIGLQFQLPKSFDNVEWYGRGPHENYPD 156 (276)
T ss_dssp EE--T----------TCCEEEEEEEEEEEETTSEEEEEEEEEEE-TTSSC-SEEEEEEEEETTEEEEEEEEEESS--BTT
T ss_pred eC--C----------CcceEEEEEEEEEEcCCCEEEEEEEEEeC-CCCCCccceEEEEEecCcceeEEEECCCCCCCCcc
Confidence 43 1 12235889999999999999999999998 77999999999999999999999999999999999
Q ss_pred hhcCccceeeccccccccccccCccCCCCccceeEEEEeeCCCceEEEEecCCCCCeeEEEecCCHHHHhccCCCCCCCC
Q 007038 480 RKAAAHVDVYEQIVGDMHVPYIVPGECAARADVRWVTFQNKEGIGIYASMYSSSPPMQLNASYYTTTELDRATHNEQLVK 559 (620)
Q Consensus 480 Rk~~a~~G~y~~tv~~~~~~Yv~PQE~Gnr~dvrw~~l~~~~g~gl~i~~~~~~~~~~fsa~~yt~~~l~~a~H~~eL~~ 559 (620)
||+||++|+|+++|++|++||++|||||||+||||++|++.+|.||+|. ++.+|+|||+|||+++|++|+|.+||++
T Consensus 157 Rk~~a~~G~y~~~v~~~~~~Y~~PQE~Gnr~dvrw~~l~~~~g~gl~v~---~~~~~~fsa~~yt~~~L~~a~H~~eL~~ 233 (276)
T PF02929_consen 157 RKTGAFLGIYESTVDDMYTPYIRPQENGNRTDVRWLSLTDSDGGGLLVT---SDDPFSFSASPYTPEELEEAKHTYELPK 233 (276)
T ss_dssp B-SSSEEEEEEEEHHHHS---SS--S---EEEEEEEEEEETTSEEEEEE---EEEEEEEEEESS-HHHHHH-SSGGGSEE
T ss_pred ccccCCcCEEcCcHHHcCcCCCCcccCCCcceeEEEEEEcCCCCeEEEe---cCCCeEEEEEeCchhHhhhcCccccCCC
Confidence 9999999999999999999999999999999999999999999999999 6789999999999999999999999999
Q ss_pred CCeEEEEEccccccCCCCCCCCCCCCCCccccCccEEEEEEEE
Q 007038 560 EDKIEVHLDHKHMGLGGDDSWTPCVHDKYLVPAVAYSFSIRLS 602 (620)
Q Consensus 560 ~~~~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~~~~~~f~i~ 602 (620)
++.|+||||++||||||+|||||.+|++|+|++++|+|+|+|+
T Consensus 234 ~~~~~l~lD~~q~GvG~d~ScGp~~~~~Y~l~~~~~~~~f~l~ 276 (276)
T PF02929_consen 234 SDRTYLNLDYAQRGVGGDNSCGPDVLPEYRLKPKPYEFSFTLR 276 (276)
T ss_dssp ESEEEEEEEEEE-----STTSS--S-GGGS-CSSEEEEEEEE-
T ss_pred CCCEEEEEecccCCcccccccCCCCCHHHCcCCccEEEEEEEC
Confidence 9999999999999999988999999999999999999999985
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=2.7e-63 Score=564.93 Aligned_cols=305 Identities=28% Similarity=0.436 Sum_probs=254.9
Q ss_pred CCcCCCCCCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHH
Q 007038 1 MPRLWSAEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDL 80 (620)
Q Consensus 1 ~p~lWs~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl 80 (620)
+|+|||+++|+||+|+++|.+ +|+++|+++++||||+|++++++|+|||+||+|||+|+|++.+..|++++++.+++||
T Consensus 241 ~p~lW~p~~P~LY~l~v~l~~-~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~ 319 (604)
T PRK10150 241 NPHLWQPGEGYLYTLCVELAK-SGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDH 319 (604)
T ss_pred CCcccCCCCCceEEEEEEEee-CCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHH
Confidence 699999999999999999986 7899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeeccccc----cCcc------cccCCCCCCCCHHHHHHHHHHHHHH
Q 007038 81 VLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIET----HGFY------FSEHLKHPTMEPSWAAAMMDRVIGM 150 (620)
Q Consensus 81 ~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~----hg~~------~~~~~~~~~~~~~~~~~~~~~~~~m 150 (620)
++||++|+|+||+||||++++||++|||+||+||+|+|.+. ++.. ..........+|+|.+++++++++|
T Consensus 320 ~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m 399 (604)
T PRK10150 320 NLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIREL 399 (604)
T ss_pred HHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998641 1110 0001111234578999999999999
Q ss_pred HHHhCCCceEEEEecCCCCCCC-----ccHHHHHHHHHHhCCCCeEecCCCC-------CCCCCcceecCC--CCcH---
Q 007038 151 VERDKNHASIICWSLGNEAGHG-----PNHSAAAGWIRGKDPSRLLHYEGGG-------SRTPSTDIVCPM--YMRV--- 213 (620)
Q Consensus 151 V~r~rNHPSIi~WslgNE~~~g-----~~~~~~~~~ik~~DptRpv~~~~~~-------~~~~~~Di~~~~--Y~~~--- 213 (620)
|+|+|||||||+||+|||+... ..+++|++++|++||||||++++.. .....+||+|.+ |...
T Consensus 400 v~r~~NHPSIi~Ws~gNE~~~~~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~~~~Dv~~~N~Y~~wy~~~ 479 (604)
T PRK10150 400 IARDKNHPSVVMWSIANEPASREQGAREYFAPLAELTRKLDPTRPVTCVNVMFATPDTDTVSDLVDVLCLNRYYGWYVDS 479 (604)
T ss_pred HHhccCCceEEEEeeccCCCccchhHHHHHHHHHHHHHhhCCCCceEEEecccCCcccccccCcccEEEEcccceecCCC
Confidence 9999999999999999998653 3568999999999999999997521 113568999973 3311
Q ss_pred -----------HHHHHHHhCCCCCCcEEEeccC-------CccCCCCcc-------HHHHHHHHHhcCCeeeeeeecccc
Q 007038 214 -----------WDIVMIAKDPTETRPLILCEYS-------HAMGNSNGN-------IHEYWEAIDSTFGLQGGFIWDWVD 268 (620)
Q Consensus 214 -----------~~~~~~~~~~~~~kP~i~~Eyg-------h~~gns~g~-------~~~y~~~~~~~~~~~G~fiW~~~D 268 (620)
..+..+.+.. +||+++|||| |+|+++.++ +++||+++.++|.++|+|||+|+|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~--~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~p~~~G~~iW~~~D 557 (604)
T PRK10150 480 GDLETAEKVLEKELLAWQEKL--HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRVPAVVGEQVWNFAD 557 (604)
T ss_pred CCHHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEEeeec
Confidence 1233333333 8999999999 899988877 789999999999999999999999
Q ss_pred cceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhcccEEE
Q 007038 269 QGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 325 (620)
Q Consensus 269 ~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~~~~ 325 (620)
+.. +.| .+.++|+ .+|||+.||+|||+++++|++|+|+.+
T Consensus 558 ~~~----~~g--~~~~~g~-----------~~Gl~~~dr~~k~~~~~~k~~~~~~~~ 597 (604)
T PRK10150 558 FAT----SQG--ILRVGGN-----------KKGIFTRDRQPKSAAFLLKKRWTGIPF 597 (604)
T ss_pred cCC----CCC--CcccCCC-----------cceeEcCCCCChHHHHHHHHHhhcCcc
Confidence 531 111 1234442 579999999999999999999999865
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=100.00 E-value=4.4e-57 Score=471.86 Aligned_cols=287 Identities=34% Similarity=0.565 Sum_probs=230.1
Q ss_pred EEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeecc
Q 007038 39 VSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (620)
Q Consensus 39 iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~ 118 (620)
|||++++|+|||||++|||+|+|+++|..|.+++.+.+++||.+||++|+|+||++|+|++++||++|||+||+||+|++
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~ 80 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIP 80 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEecc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc-ccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCccHHHHHHHHHHhCCCCeEecCCCC
Q 007038 119 IETHGFYF-SEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (620)
Q Consensus 119 ~~~hg~~~-~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~~~~~ 197 (620)
.++|+... .+.......++.|.+.+++++++||+|+|||||||+|++|||+.....++.|.+++|++||||||++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~~~~~~~l~~~~k~~DptRpv~~~~~~ 160 (298)
T PF02836_consen 81 LEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDYREFLKELYDLVKKLDPTRPVTYASNG 160 (298)
T ss_dssp -BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHHHHHHHHHHHHHHHH-TTSEEEEETGT
T ss_pred ccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCccccchhHHHHHHHhcCCCCceeecccc
Confidence 98877431 11112235789999999999999999999999999999999996667789999999999999999998763
Q ss_pred C----CCCCcceecCCCCc---HHHHHHHHhC--CCCCCcEEEeccCCccCCCCccHHHHHHHHHhcCCeeeeeeecccc
Q 007038 198 S----RTPSTDIVCPMYMR---VWDIVMIAKD--PTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (620)
Q Consensus 198 ~----~~~~~Di~~~~Y~~---~~~~~~~~~~--~~~~kP~i~~Eygh~~gns~g~~~~y~~~~~~~~~~~G~fiW~~~D 268 (620)
. .....|+.+.+|.. ...+..+... ...+||+++||||+.+.++.|...++++....++..++.|+|.|.|
T Consensus 161 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~g~~~~~~~~~~~~~~~q~~~~~~~~~ 240 (298)
T PF02836_consen 161 WDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSKGGDSEYWQLWSWYEEYQGAFIWDYQD 240 (298)
T ss_dssp SGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-TTHHHHHHHHHHCTTEEEEEESHSBH
T ss_pred cccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccCCCccccccccccCchhhhhhhhhhhh
Confidence 2 11223555556654 3344444432 2348999999999999998889999999999899999999999999
Q ss_pred cceeeeeCC-CcEEEeecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhcccEEE
Q 007038 269 QGLLRELAD-GTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQAIKV 325 (620)
Q Consensus 269 ~~~~~~~~~-g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~~~~ 325 (620)
+.+...... ...+..+|+||...++|.++|.+|||+.||+||++++++|++|+||+.
T Consensus 241 ~~~~~~~~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~~~v~~ 298 (298)
T PF02836_consen 241 QAIQRRDPYVAGEFYWTGFDFGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQWSPVQA 298 (298)
T ss_dssp HHEEEEETTESEEEEEETTTTSCSSBTGGGGSBESBETTSEBBHHHHHHHHHHHSEEE
T ss_pred hhhccccccccceeeecceEeccCCCCCeeeeccEECCcCCcCHHHHHHHHHhhhhcC
Confidence 887554443 334556889999999999999999999999999999999999999974
No 7
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.6e-18 Score=183.57 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=139.5
Q ss_pred CCcCCCC---CCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEEC--------C--EEEECCEEEEEEeeecCCCCCCC
Q 007038 1 MPRLWSA---EQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAP--------K--QLLVNGNPVVIRGVNRHEHHPRV 67 (620)
Q Consensus 1 ~p~lWs~---e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~--------~--~f~lNGkpi~lrGvn~h~~~p~~ 67 (620)
+|..|++ ....||.+++.. .|... +.++|||+++... + .|.+||.|++|||.|+..-.-..
T Consensus 278 ~~e~wwp~g~g~q~~y~~~v~~---gg~~~---ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~ 351 (867)
T KOG2230|consen 278 EPERWWPNGMGEQKLYDVVVSM---GGQVK---EKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFR 351 (867)
T ss_pred cccccCCCCCCcceeEEEEEec---Cceee---eeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHH
Confidence 3567875 677899988766 45444 5599999999851 1 57899999999999986443233
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEccC--CCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHH
Q 007038 68 GKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMD 145 (620)
Q Consensus 68 G~~~~~e~~~~Dl~lmK~~g~NavR~~h--~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~ 145 (620)
...+-+.++.-|+-.+++|+|++|.+. .-.+++||++||++||+||+++.+.|--+ ..+.+|.....+
T Consensus 352 -dr~t~~~~~~LL~Sv~e~~MN~lRVWGGGvYEsd~FY~lad~lGilVWQD~MFACAlY---------Pt~~eFl~sv~e 421 (867)
T KOG2230|consen 352 -DRENIAKTEFLLDSVAEVGMNMLRVWGGGVYESDYFYQLADSLGILVWQDMMFACALY---------PTNDEFLSSVRE 421 (867)
T ss_pred -hhHHHHHHHHHHHHHHHhCcceEEEecCccccchhHHHHhhhccceehhhhHHHhhcc---------cCcHHHHHHHHH
Confidence 345677888889999999999999964 34778999999999999999997665322 356779999999
Q ss_pred HHHHHHHHhCCCceEEEEecCCCCC-------CCcc---------------HHHHHHHHHHhCCCCeEecCC
Q 007038 146 RVIGMVERDKNHASIICWSLGNEAG-------HGPN---------------HSAAAGWIRGKDPSRLLHYEG 195 (620)
Q Consensus 146 ~~~~mV~r~rNHPSIi~WslgNE~~-------~g~~---------------~~~~~~~ik~~DptRpv~~~~ 195 (620)
+++.-+.|.+.|||||+||..||.. ++.. .+.+.+..+.-||+||....+
T Consensus 422 EV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SS 493 (867)
T KOG2230|consen 422 EVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSS 493 (867)
T ss_pred HHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecC
Confidence 9999999999999999999999973 2211 234677778889999976544
No 8
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.72 E-value=1.6e-16 Score=161.75 Aligned_cols=219 Identities=17% Similarity=0.261 Sum_probs=125.7
Q ss_pred EEEEEECCEEE--ECCEEEEEEeeecCCCCCCC-----CCCCCHHHHHHHHHHHHHcCCcEEEccCCC---ChhHHHHHH
Q 007038 37 RQVSKAPKQLL--VNGNPVVIRGVNRHEHHPRV-----GKTNIESCMVKDLVLMKQNNINAVRNSHYP---QHPRWYELC 106 (620)
Q Consensus 37 R~iei~~~~f~--lNGkpi~lrGvn~h~~~p~~-----G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p---~~~~~~dlc 106 (620)
-.|+++|+.|+ .||++++||||.+++-.... -.-.+.+.++||+.+||++|+|+||+.+.- +|..++.++
T Consensus 9 ~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~ 88 (314)
T PF03198_consen 9 PPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAF 88 (314)
T ss_dssp --EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHH
T ss_pred CCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHH
Confidence 46899999999 89999999999986543211 112467999999999999999999996644 678999999
Q ss_pred hhcCCeEEeeccccccCcccccCCCCCCCCH--HHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCc-----------
Q 007038 107 DLFGLYMIDEANIETHGFYFSEHLKHPTMEP--SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP----------- 173 (620)
Q Consensus 107 De~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~--~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~----------- 173 (620)
.+.||||+.+.+.... .+ ...+| .|...++++...+|+...++|.+++...|||.....
T Consensus 89 ~~aGIYvi~Dl~~p~~------sI--~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKA 160 (314)
T PF03198_consen 89 ADAGIYVILDLNTPNG------SI--NRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKA 160 (314)
T ss_dssp HHTT-EEEEES-BTTB------S----TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHH
T ss_pred HhCCCEEEEecCCCCc------cc--cCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHH
Confidence 9999999999865421 12 13556 899999999999999999999999999999997542
Q ss_pred cHHHHHHHHHHhCC-CCeEecCCCC---------------CCCCCcceecCC-CCcH----------HHHHHHHhCCCCC
Q 007038 174 NHSAAAGWIRGKDP-SRLLHYEGGG---------------SRTPSTDIVCPM-YMRV----------WDIVMIAKDPTET 226 (620)
Q Consensus 174 ~~~~~~~~ik~~Dp-tRpv~~~~~~---------------~~~~~~Di~~~~-Y~~~----------~~~~~~~~~~~~~ 226 (620)
..+.|.+++|+... +-||.|..+. .....+|+++.+ |.+. +.+.+.+... .
T Consensus 161 avRD~K~Yi~~~~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~Stf~~SGy~~l~~~f~~y--~ 238 (314)
T PF03198_consen 161 AVRDMKAYIKSKGYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEWCGDSTFETSGYDRLTKEFSNY--S 238 (314)
T ss_dssp HHHHHHHHHHHSSS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE----SS--HHHHSHHHHHHHHTT---S
T ss_pred HHHHHHHHHHhcCCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeeccceecCCCccccccHHHHHHHhhCC--C
Confidence 14567778888665 3477775432 112457887763 6432 2244444433 7
Q ss_pred CcEEEeccCCccCCC--CccHHHHHHHH--HhcCCeeeeeeecccc
Q 007038 227 RPLILCEYSHAMGNS--NGNIHEYWEAI--DSTFGLQGGFIWDWVD 268 (620)
Q Consensus 227 kP~i~~Eygh~~gns--~g~~~~y~~~~--~~~~~~~G~fiW~~~D 268 (620)
.|++++||| +|. +..+.+--..+ .-.+-..||++.+|+-
T Consensus 239 vPvffSEyG---Cn~~~pR~f~ev~aly~~~Mt~v~SGGivYEy~~ 281 (314)
T PF03198_consen 239 VPVFFSEYG---CNTVTPRTFTEVPALYSPEMTDVWSGGIVYEYFQ 281 (314)
T ss_dssp S-EEEEEE------SSSS---THHHHHTSHHHHTTEEEEEES-SB-
T ss_pred CCeEEcccC---CCCCCCccchHhHHhhCccchhheeceEEEEEec
Confidence 899999998 343 33344332221 1235688999999885
No 9
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.51 E-value=3.4e-13 Score=138.88 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=135.0
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCC------CCh------------hHHHHHHhhc
Q 007038 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY------PQH------------PRWYELCDLF 109 (620)
Q Consensus 48 lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~------p~~------------~~~~dlcDe~ 109 (620)
.||+++.++|+|.|-. .....+++++.||++|+|+||+.-. +.+ .+++++|.++
T Consensus 3 ~~G~~v~~~G~n~~w~--------~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~ 74 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWY--------NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAY 74 (281)
T ss_dssp TTSEBEEEEEEEETTS--------GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeeeecccC--------CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhC
Confidence 4899999999999811 1117899999999999999999311 111 2689999999
Q ss_pred CCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCc---------------c
Q 007038 110 GLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP---------------N 174 (620)
Q Consensus 110 Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~---------------~ 174 (620)
||+|+.+.... .++...... ....+...+.+.+.++.++.|++++|.|++|.|.||+.... .
T Consensus 75 gi~vild~h~~-~~w~~~~~~--~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 75 GIYVILDLHNA-PGWANGGDG--YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp T-EEEEEEEES-TTCSSSTST--TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred CCeEEEEeccC-ccccccccc--cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 99999876321 112100010 02333445556667899999999999999999999997631 1
Q ss_pred HHHHHHHHHHhCCCCeEecCCCCC----------C---CCCcceecCC-CCcH------------------HHHH---HH
Q 007038 175 HSAAAGWIRGKDPSRLLHYEGGGS----------R---TPSTDIVCPM-YMRV------------------WDIV---MI 219 (620)
Q Consensus 175 ~~~~~~~ik~~DptRpv~~~~~~~----------~---~~~~Di~~~~-Y~~~------------------~~~~---~~ 219 (620)
.+++++.||+.||+++|...+... . ...-++++.| |... ..+. .+
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPNDADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNW 231 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTTTTTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcccccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHH
Confidence 468899999999999998765210 0 1234566664 4311 1111 22
Q ss_pred HhCCCCCCcEEEeccCCccCCC---CccHHHHHHHHHhcCCeeeeeeecccc
Q 007038 220 AKDPTETRPLILCEYSHAMGNS---NGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (620)
Q Consensus 220 ~~~~~~~kP~i~~Eygh~~gns---~g~~~~y~~~~~~~~~~~G~fiW~~~D 268 (620)
... .++|++++|||...... ......+.+.+.++ -+|.+.|+|-.
T Consensus 232 ~~~--~g~pv~~gE~G~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~W~~~~ 279 (281)
T PF00150_consen 232 AKK--NGKPVVVGEFGWSNNDGNGSTDYADAWLDYLEQN--GIGWIYWSWKP 279 (281)
T ss_dssp HHH--TTSEEEEEEEESSTTTSCHHHHHHHHHHHHHHHT--TCEEEECEESS
T ss_pred HHH--cCCeEEEeCcCCcCCCCCcCHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 222 26899999999763332 12234556666665 56888898754
No 10
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.30 E-value=2.8e-11 Score=130.67 Aligned_cols=227 Identities=22% Similarity=0.285 Sum_probs=130.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCC------Ch--------hHHHHHHhhcCCeEEeeccccc---------------
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYP------QH--------PRWYELCDLFGLYMIDEANIET--------------- 121 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p------~~--------~~~~dlcDe~Gi~V~~E~~~~~--------------- 121 (620)
.+++.+++||++||++|+|+||+.... .. +.++++|.++||.|+.-.+...
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~ 86 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPV 86 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhccccccc
Confidence 356899999999999999999974322 11 4789999999999985443110
Q ss_pred --cCcc--cccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCC-c-----------------------
Q 007038 122 --HGFY--FSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG-P----------------------- 173 (620)
Q Consensus 122 --hg~~--~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g-~----------------------- 173 (620)
.|.. .........++|.+++.+.+.++++++++++||+|++|.+.||.+.. +
T Consensus 87 ~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~L 166 (374)
T PF02449_consen 87 DADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYSPACQAAFRQWLKEKYGTIEAL 166 (374)
T ss_dssp -TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--SHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCChHHHHHHHHHHHHHhCCHHHH
Confidence 1100 00011122578899999999999999999999999999999997431 0
Q ss_pred -----------------------------------------------cHHHHHHHHHHhCCCCeEecCCCC-----CC--
Q 007038 174 -----------------------------------------------NHSAAAGWIRGKDPSRLLHYEGGG-----SR-- 199 (620)
Q Consensus 174 -----------------------------------------------~~~~~~~~ik~~DptRpv~~~~~~-----~~-- 199 (620)
.+..+++.||+.||++||+....+ .+
T Consensus 167 N~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~~~~~~d~~ 246 (374)
T PF02449_consen 167 NRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGSWFNGIDYF 246 (374)
T ss_dssp HHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT---SS-HH
T ss_pred HHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCccccccCcCCHH
Confidence 024678889999999999943221 11
Q ss_pred --CCCcceecC-CCCcH------------HHHHHHHhCCCCCCcEEEeccCCccCC-----C---CccHH-HHHHHHHhc
Q 007038 200 --TPSTDIVCP-MYMRV------------WDIVMIAKDPTETRPLILCEYSHAMGN-----S---NGNIH-EYWEAIDST 255 (620)
Q Consensus 200 --~~~~Di~~~-~Y~~~------------~~~~~~~~~~~~~kP~i~~Eygh~~gn-----s---~g~~~-~y~~~~~~~ 255 (620)
....|+++. .|+.. ............+||++++|...+..| . +|.+. ..|.++.
T Consensus 247 ~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~~~~~A-- 324 (374)
T PF02449_consen 247 KWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWSWQAIA-- 324 (374)
T ss_dssp HHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTHHHHHHHHHHH--
T ss_pred HHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCHHHHHHHHHHH--
Confidence 345788776 35440 001122222234899999998422111 1 23332 2333333
Q ss_pred CCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCC-CCcccHHHHHHhcc
Q 007038 256 FGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDR-TPHPALHEVKYVYQ 321 (620)
Q Consensus 256 ~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR-~pk~~~~e~k~~~~ 321 (620)
-+..|...|.|-.. ..|. +....||++.|. +|...+.|++++-+
T Consensus 325 ~Ga~~i~~~~wr~~------~~g~----------------E~~~~g~~~~dg~~~~~~~~e~~~~~~ 369 (374)
T PF02449_consen 325 HGADGILFWQWRQS------RFGA----------------EQFHGGLVDHDGREPTRRYREVAQLGR 369 (374)
T ss_dssp TT-S-EEEC-SB--------SSST----------------TTTS--SB-TTS--B-HHHHHHHHHHH
T ss_pred HhCCeeEeeeccCC------CCCc----------------hhhhcccCCccCCCCCcHHHHHHHHHH
Confidence 35667778887431 1111 112359999999 99999999998754
No 11
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.28 E-value=8.5e-11 Score=123.77 Aligned_cols=144 Identities=23% Similarity=0.260 Sum_probs=96.1
Q ss_pred EEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------hHHHHHHhh
Q 007038 45 QLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PRWYELCDL 108 (620)
Q Consensus 45 ~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~-----~h~p~~-----------~~~~dlcDe 108 (620)
.|+|||||++|-+...|.+. ++++.|+..|+.||++|+|+|-+ .|-|.. ..|+++|.+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r------~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~ 74 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFR------IPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQE 74 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGG------S-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHH
T ss_pred CeEECCEEEEEEEeeecccc------CChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHH
Confidence 48999999999999999774 67999999999999999999999 344432 389999999
Q ss_pred cCCeEEeecc------ccccCcccc----cCCCCCCCCHHHHHHHHHHHHHHHHHhC-----CCceEEEEecCCCCCCCc
Q 007038 109 FGLYMIDEAN------IETHGFYFS----EHLKHPTMEPSWAAAMMDRVIGMVERDK-----NHASIICWSLGNEAGHGP 173 (620)
Q Consensus 109 ~Gi~V~~E~~------~~~hg~~~~----~~~~~~~~~~~~~~~~~~~~~~mV~r~r-----NHPSIi~WslgNE~~~g~ 173 (620)
.||+|+.-.. ++..|+..+ ......++++.|.+++.+.++++....+ +--.|||-++.||.+...
T Consensus 75 ~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~ 154 (319)
T PF01301_consen 75 NGLYVILRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYG 154 (319)
T ss_dssp TT-EEEEEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTS
T ss_pred cCcEEEecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCc
Confidence 9999985431 222233211 1234457899998887766666555443 334699999999998432
Q ss_pred ----cHHHHHHHHHHhCCCCeEecC
Q 007038 174 ----NHSAAAGWIRGKDPSRLLHYE 194 (620)
Q Consensus 174 ----~~~~~~~~ik~~DptRpv~~~ 194 (620)
.++.+.+..++.=++-++.+.
T Consensus 155 ~~~~Y~~~l~~~~~~~g~~~~~~~t 179 (319)
T PF01301_consen 155 TDRAYMEALKDAYRDWGIDPVLLYT 179 (319)
T ss_dssp S-HHHHHHHHHHHHHTT-SSSBEEE
T ss_pred ccHhHHHHHHHHHHHhhCccceeec
Confidence 345666666665555444443
No 12
>PLN03059 beta-galactosidase; Provisional
Probab=99.25 E-value=1e-09 Score=125.56 Aligned_cols=186 Identities=15% Similarity=0.118 Sum_probs=129.3
Q ss_pred EEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------hH
Q 007038 38 QVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH-----------PR 101 (620)
Q Consensus 38 ~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~-----~h~p~~-----------~~ 101 (620)
.|+++++.|+|||||++|.+...|.+. ++++.|+..|+.||++|+|+|=| .|-|.. .+
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R------~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~ 102 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVK 102 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCc------CCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHH
Confidence 689999999999999999999999663 78999999999999999999998 466543 37
Q ss_pred HHHHHhhcCCeEEeec------cccccCcccc----cCCCCCCCCHHHHHHHHHHHHHHHHHhC-------CCceEEEEe
Q 007038 102 WYELCDLFGLYMIDEA------NIETHGFYFS----EHLKHPTMEPSWAAAMMDRVIGMVERDK-------NHASIICWS 164 (620)
Q Consensus 102 ~~dlcDe~Gi~V~~E~------~~~~hg~~~~----~~~~~~~~~~~~~~~~~~~~~~mV~r~r-------NHPSIi~Ws 164 (620)
|+++|.|.||||+.-. -++..|+..+ ..+...+++|.|.++..+.+.+++.+.+ |--.|||-+
T Consensus 103 Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 103 FIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred HHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 9999999999998433 3333454322 2244557899999887776666666654 455799999
Q ss_pred cCCCCCCC---------ccHHHHHHHHHHhCCCCeEecCCCCCCCCCcceecCCCCcHHHHHHHHhCCCCCCcEEEecc
Q 007038 165 LGNEAGHG---------PNHSAAAGWIRGKDPSRLLHYEGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRPLILCEY 234 (620)
Q Consensus 165 lgNE~~~g---------~~~~~~~~~ik~~DptRpv~~~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP~i~~Ey 234 (620)
+.||.+.. ..++.+.+.+++...+=|....... . ..-+++....... .+.+. .....+|++.+||
T Consensus 183 IENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~-~-~~~~v~~t~Ng~~--~~~f~-~~~~~~P~m~tE~ 256 (840)
T PLN03059 183 IENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQE-D-APDPVIDTCNGFY--CENFK-PNKDYKPKMWTEA 256 (840)
T ss_pred ecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCC-C-CCccceecCCCch--hhhcc-cCCCCCCcEEecc
Confidence 99999752 2356777777777776565443321 1 1112332211111 12222 2223589999997
No 13
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.8e-10 Score=121.60 Aligned_cols=238 Identities=17% Similarity=0.168 Sum_probs=150.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCC-----------C-------hhHHHHHHhhcCCeEEeecccc-cc--Ccc---c
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYP-----------Q-------HPRWYELCDLFGLYMIDEANIE-TH--GFY---F 126 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p-----------~-------~~~~~dlcDe~Gi~V~~E~~~~-~h--g~~---~ 126 (620)
...+.++.|++.|+.+|++.+|.+.-- + ..+|++.|.+++|.|....-.. .| |.. +
T Consensus 23 ~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip 102 (587)
T COG3934 23 IGNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP 102 (587)
T ss_pred hhhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee
Confidence 346788999999999999999997211 1 1479999999999997543111 11 110 1
Q ss_pred cc---CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCC-----Ccc----HHHHHHHHHHhCCCCeEecC
Q 007038 127 SE---HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH-----GPN----HSAAAGWIRGKDPSRLLHYE 194 (620)
Q Consensus 127 ~~---~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~-----g~~----~~~~~~~ik~~DptRpv~~~ 194 (620)
+. ......-++.++..+.+.+..+|+.+|-||+|..|.+.||+-. +.+ ...|+.+||.+||.++|.-.
T Consensus 103 wag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG 182 (587)
T COG3934 103 WAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG 182 (587)
T ss_pred cCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC
Confidence 10 0111145788888899999999999999999999999999532 222 47899999999999999854
Q ss_pred CCCC---------CCCCcceecCC-CCcHHH----------HHHHHhCC--CCCCcEEEeccCCc--cCCCCccHHHHH-
Q 007038 195 GGGS---------RTPSTDIVCPM-YMRVWD----------IVMIAKDP--TETRPLILCEYSHA--MGNSNGNIHEYW- 249 (620)
Q Consensus 195 ~~~~---------~~~~~Di~~~~-Y~~~~~----------~~~~~~~~--~~~kP~i~~Eygh~--~gns~g~~~~y~- 249 (620)
...+ ....+|.-+++ |+..+. .+.+++.+ ..-+|+++.|||-+ .|.+......-|
T Consensus 183 D~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~ 262 (587)
T COG3934 183 DPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWI 262 (587)
T ss_pred CcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhh
Confidence 3221 01245655553 421110 11122211 11389999999843 232211122223
Q ss_pred HHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 250 EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 250 ~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
+....+ .--|++||++.|+++...++.+ .| .|..-+| |||..|..+|-.+.++++..+.
T Consensus 263 ~lal~~-ggdGaLiwclsdf~~gsdd~ey----~w------~p~el~f---giIradgpek~~a~~~~~fsn~ 321 (587)
T COG3934 263 RLALDT-GGDGALIWCLSDFHLGSDDSEY----TW------GPMELEF---GIIRADGPEKIDAMTLHIFSNN 321 (587)
T ss_pred hhHHhh-cCCceEEEEecCCccCCCCCCC----cc------cccccee---eeecCCCchhhhHHHHHHhccc
Confidence 222222 3347899999999865433321 12 2444445 6999999999999998887554
No 14
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=3.8e-08 Score=111.33 Aligned_cols=127 Identities=20% Similarity=0.216 Sum_probs=95.6
Q ss_pred ECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc------cCCCC---------hhHHHHHH
Q 007038 42 APKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN------SHYPQ---------HPRWYELC 106 (620)
Q Consensus 42 ~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~------~h~p~---------~~~~~dlc 106 (620)
+...+.+.|+++.+.|.++|++. ++++.+..||++||++|+|+||+ .|-|. +..|++++
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~~l~~a 77 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEIFLERA 77 (673)
T ss_pred cccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHHHHHHH
Confidence 45678999999999999998764 66799999999999999999999 24442 23479999
Q ss_pred hhcCCeEEeec-cc------cccCcccc-------------cCCCCCCCCHHHHHHHHHHHHHHHHH-hCCCceEEEEec
Q 007038 107 DLFGLYMIDEA-NI------ETHGFYFS-------------EHLKHPTMEPSWAAAMMDRVIGMVER-DKNHASIICWSL 165 (620)
Q Consensus 107 De~Gi~V~~E~-~~------~~hg~~~~-------------~~~~~~~~~~~~~~~~~~~~~~mV~r-~rNHPSIi~Wsl 165 (620)
++.||+|+.-. |. ..+++... .+-......+-+++.....++.+.+| +.|||+|++|.+
T Consensus 78 ~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~ 157 (673)
T COG1874 78 YKAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQN 157 (673)
T ss_pred HhcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEc
Confidence 99999999766 41 11221100 11122345666777777777888899 999999999999
Q ss_pred CCCCCC-Ccc
Q 007038 166 GNEAGH-GPN 174 (620)
Q Consensus 166 gNE~~~-g~~ 174 (620)
.||.++ ++.
T Consensus 158 dneY~~~~~~ 167 (673)
T COG1874 158 DNEYGGHPCY 167 (673)
T ss_pred cCccCCcccc
Confidence 999987 443
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.45 E-value=4e-06 Score=85.82 Aligned_cols=189 Identities=16% Similarity=0.155 Sum_probs=115.2
Q ss_pred hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCC-------
Q 007038 100 PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG------- 172 (620)
Q Consensus 100 ~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g------- 172 (620)
..+++.|.+.||.|---.-+ +|...+ .... ....++..+.+.+.+++++.|++.- |..|.+.||+...
T Consensus 19 D~~~~~a~~~gi~v~gH~l~-W~~~~P-~W~~-~~~~~~~~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~ 93 (254)
T smart00633 19 DAIVNFAKENGIKVRGHTLV-WHSQTP-DWVF-NLSKETLLARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRR 93 (254)
T ss_pred HHHHHHHHHCCCEEEEEEEe-ecccCC-Hhhh-cCCHHHHHHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCccccc
Confidence 45677777777776321111 111111 0110 0123455677888999999999855 8999999997431
Q ss_pred ---------ccHHHHHHHHHHhCCCCeEecCCCCC-------------------CCCCcceecC--C----CCcHHHHHH
Q 007038 173 ---------PNHSAAAGWIRGKDPSRLLHYEGGGS-------------------RTPSTDIVCP--M----YMRVWDIVM 218 (620)
Q Consensus 173 ---------~~~~~~~~~ik~~DptRpv~~~~~~~-------------------~~~~~Di~~~--~----Y~~~~~~~~ 218 (620)
..+....+++|+.||+=.+.+..-+. .....|.++. + ++..+.+.+
T Consensus 94 ~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~ 173 (254)
T smart00633 94 SVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRA 173 (254)
T ss_pred chHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHH
Confidence 22467889999999975544431100 0112555553 1 244555544
Q ss_pred HHhCC-CCCCcEEEeccCCccCCCCc----cHHHHHHHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCC
Q 007038 219 IAKDP-TETRPLILCEYSHAMGNSNG----NIHEYWEAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPN 293 (620)
Q Consensus 219 ~~~~~-~~~kP~i~~Eygh~~gns~g----~~~~y~~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~ 293 (620)
.++.. ..++|+.+||+.-....+.. .++++.+++.++|.+.|-++|.|.|... |. +
T Consensus 174 ~l~~~~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~----------W~--------~- 234 (254)
T smart00633 174 ALDRFASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVTDKYS----------WL--------D- 234 (254)
T ss_pred HHHHHHHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCccCCc----------cc--------C-
Confidence 44321 13899999999755433211 2567778888999999999999998321 21 0
Q ss_pred CcccccCceecCCCCCcccHHH
Q 007038 294 DLNFCLNGLLWPDRTPHPALHE 315 (620)
Q Consensus 294 d~~f~~~Glv~~dR~pk~~~~e 315 (620)
+ ..-||++.|.+|||+++.
T Consensus 235 ~---~~~~L~d~~~~~kpa~~~ 253 (254)
T smart00633 235 G---GAPLLFDANYQPKPAYWA 253 (254)
T ss_pred C---CCceeECCCCCCChhhhc
Confidence 0 113899999999999864
No 16
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.19 E-value=2.5e-05 Score=74.58 Aligned_cols=118 Identities=13% Similarity=0.195 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEc--------cCCCC--------------hhHHHHHHhhcCCeEEeeccccccCccc
Q 007038 69 KTNIESCMVKDLVLMKQNNINAVRN--------SHYPQ--------------HPRWYELCDLFGLYMIDEANIETHGFYF 126 (620)
Q Consensus 69 ~~~~~e~~~~Dl~lmK~~g~NavR~--------~h~p~--------------~~~~~dlcDe~Gi~V~~E~~~~~hg~~~ 126 (620)
...++++++++++.||++||++|=+ ..||. -+.+|++||++||.|+.-.+....=|.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~- 93 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPDYWD- 93 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCchhhh-
Confidence 4589999999999999999999833 22332 136899999999999988764321111
Q ss_pred ccCCCCCCCCHHHHHHHH-HHHHHHHHHhCCCceEEEEecCCCCCCCc-----cHHHHHHHHHHhCCCCeEecC
Q 007038 127 SEHLKHPTMEPSWAAAMM-DRVIGMVERDKNHASIICWSLGNEAGHGP-----NHSAAAGWIRGKDPSRLLHYE 194 (620)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-~~~~~mV~r~rNHPSIi~WslgNE~~~g~-----~~~~~~~~ik~~DptRpv~~~ 194 (620)
..+++|..... ..+.++..++.+|||.-.|=+-.|..... .++.+..++|.+-|..||..+
T Consensus 94 -------~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 94 -------QGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred -------ccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 25555633332 24777888999999999999999997542 357889999999999998754
No 17
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=5.6e-05 Score=84.19 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=106.1
Q ss_pred EEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCCh-----------
Q 007038 36 IRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQH----------- 99 (620)
Q Consensus 36 fR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~-----~h~p~~----------- 99 (620)
-..|..++..|.+||+|..+-....|..+ .+++.+..-|+.+|++|+|+|-| -|-|..
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R------~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~Dl 90 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPR------STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDL 90 (649)
T ss_pred eeEEeccccceeecCCeeEEEEecccccc------CChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHH
Confidence 34566678999999999999999999664 78999999999999999999999 355543
Q ss_pred hHHHHHHhhcCCeEEeec------cccccCcccc----cCCCCCCCCHHHHHHHHHHHHHHHH-----HhCCCceEEEEe
Q 007038 100 PRWYELCDLFGLYMIDEA------NIETHGFYFS----EHLKHPTMEPSWAAAMMDRVIGMVE-----RDKNHASIICWS 164 (620)
Q Consensus 100 ~~~~dlcDe~Gi~V~~E~------~~~~hg~~~~----~~~~~~~~~~~~~~~~~~~~~~mV~-----r~rNHPSIi~Ws 164 (620)
..|+.+|.+.||||+.-. -++..|+..+ ..+...++++.|..++.+-++.+|. -.+|---||+=+
T Consensus 91 vkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~Q 170 (649)
T KOG0496|consen 91 VKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQ 170 (649)
T ss_pred HHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 379999999999998433 1222233311 1233457888888776655555554 245777799999
Q ss_pred cCCCCCCCccHHHHHHHHHHhCCCCeEe
Q 007038 165 LGNEAGHGPNHSAAAGWIRGKDPSRLLH 192 (620)
Q Consensus 165 lgNE~~~g~~~~~~~~~ik~~DptRpv~ 192 (620)
+.||.+ ....++.+..|+.=..+-+.
T Consensus 171 IENEYG--~~~~~~~~~~k~y~~w~a~m 196 (649)
T KOG0496|consen 171 IENEYG--NYLRALGAEGKSYLKWAAVL 196 (649)
T ss_pred eechhh--HHHHHHHHHHHHhhccceEE
Confidence 999988 34455555555544444443
No 18
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=98.18 E-value=1.7e-05 Score=82.64 Aligned_cols=178 Identities=17% Similarity=0.120 Sum_probs=94.2
Q ss_pred ECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC-----------------------------
Q 007038 48 VNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ----------------------------- 98 (620)
Q Consensus 48 lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~----------------------------- 98 (620)
-+|+|++.-|-..... -...+.+.++.=|+..|+.|||.||+.-.|.
T Consensus 8 ~dG~Pff~lgdT~W~~----~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N 83 (289)
T PF13204_consen 8 ADGTPFFWLGDTAWSL----FHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN 83 (289)
T ss_dssp TTS-B--EEEEE-TTH----HHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--
T ss_pred CCCCEEeehhHHHHHH----hhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC
Confidence 6999999999664321 1235678888889999999999999932211
Q ss_pred h------hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC-CC
Q 007038 99 H------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA-GH 171 (620)
Q Consensus 99 ~------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~-~~ 171 (620)
. ++.++.+.++||.+-.-. ++.+.+.+..... .....-.+.....++-+|+|++..|.|| |+++||. ..
T Consensus 84 ~~YF~~~d~~i~~a~~~Gi~~~lv~-~wg~~~~~~~Wg~--~~~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~~~ 159 (289)
T PF13204_consen 84 PAYFDHLDRRIEKANELGIEAALVP-FWGCPYVPGTWGF--GPNIMPPENAERYGRYVVARYGAYPNVI-WILGGDYFDT 159 (289)
T ss_dssp --HHHHHHHHHHHHHHTT-EEEEES-S-HHHHH---------TTSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS--T
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEE-EECCccccccccc--cccCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccCCC
Confidence 0 246889999999995322 2100110000000 0011124556778999999999999988 9999999 22
Q ss_pred C---ccHHHHHHHHHHhCCCCeEecCCCCC--------CCCCcceecCC-----C--CcHHHH---HHHHhCCCCCCcEE
Q 007038 172 G---PNHSAAAGWIRGKDPSRLLHYEGGGS--------RTPSTDIVCPM-----Y--MRVWDI---VMIAKDPTETRPLI 230 (620)
Q Consensus 172 g---~~~~~~~~~ik~~DptRpv~~~~~~~--------~~~~~Di~~~~-----Y--~~~~~~---~~~~~~~~~~kP~i 230 (620)
. ...++|++.||+.||..|+++...+. +.+-+|+.+.. + .....+ ..+.. .+.||+|
T Consensus 160 ~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh~~~~~~~~~~~~~~~~~~~--~p~KPvi 237 (289)
T PF13204_consen 160 EKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGHNRYDQDNWYYLPEEFDYRR--KPVKPVI 237 (289)
T ss_dssp TSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S--TT--THHHH--HHHHTS--SS---EE
T ss_pred CcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCCCcccchHHHHHhhhhhhhh--CCCCCEE
Confidence 2 23579999999999988988765431 12336665531 1 112223 22222 3599999
Q ss_pred EeccC
Q 007038 231 LCEYS 235 (620)
Q Consensus 231 ~~Eyg 235 (620)
..|.+
T Consensus 238 n~Ep~ 242 (289)
T PF13204_consen 238 NGEPC 242 (289)
T ss_dssp ESS--
T ss_pred cCccc
Confidence 99986
No 19
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.11 E-value=3.9e-06 Score=71.49 Aligned_cols=60 Identities=27% Similarity=0.370 Sum_probs=37.8
Q ss_pred HHHHhCCCceEEEEecCCC-CCC-C----------------ccHHHHHHHHHHhCCCCeEecCCCCCC--------CCCc
Q 007038 150 MVERDKNHASIICWSLGNE-AGH-G----------------PNHSAAAGWIRGKDPSRLLHYEGGGSR--------TPST 203 (620)
Q Consensus 150 mV~r~rNHPSIi~WslgNE-~~~-g----------------~~~~~~~~~ik~~DptRpv~~~~~~~~--------~~~~ 203 (620)
+|.++++||.|++|.|+|| .+. . ..++++.+++|++||++||+....... ...+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~~~~~~~~~~~~~~ 80 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGGDWEDLEQLQAENL 80 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S-TTHHHHS--TT-
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccCCHHHHHHhchhcC
Confidence 4889999999999999999 541 1 125789999999999999986533211 2467
Q ss_pred ceecCC
Q 007038 204 DIVCPM 209 (620)
Q Consensus 204 Di~~~~ 209 (620)
|++++|
T Consensus 81 DvisfH 86 (88)
T PF12876_consen 81 DVISFH 86 (88)
T ss_dssp SSEEB-
T ss_pred CEEeee
Confidence 777765
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.03 E-value=2.4e-05 Score=82.44 Aligned_cols=185 Identities=19% Similarity=0.213 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCcEEEc--cCCCCh------h---HHHHHHhhcCCeEEeeccccccCcccccCCC----CCC-CCHHHHH
Q 007038 78 KDLVLMKQNNINAVRN--SHYPQH------P---RWYELCDLFGLYMIDEANIETHGFYFSEHLK----HPT-MEPSWAA 141 (620)
Q Consensus 78 ~Dl~lmK~~g~NavR~--~h~p~~------~---~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~----~~~-~~~~~~~ 141 (620)
.-+++||+.|+|+||+ +..|.+ + ....-+.++||.|+.++.. +.-|...+... +.. +..+..+
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHY-SD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHY-SDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-S-SSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecc-cCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 3478999999999998 555544 2 3556677889999988732 11121111111 112 3355667
Q ss_pred HHHHHHHHHHHHhCCCc-eEEEEecCCCCCCC--------cc-------HHHHHHHHHHhCCCCeE--ecCCCCC-----
Q 007038 142 AMMDRVIGMVERDKNHA-SIICWSLGNEAGHG--------PN-------HSAAAGWIRGKDPSRLL--HYEGGGS----- 198 (620)
Q Consensus 142 ~~~~~~~~mV~r~rNHP-SIi~WslgNE~~~g--------~~-------~~~~~~~ik~~DptRpv--~~~~~~~----- 198 (620)
++.++++.++...++.- .+=|+++|||...| .+ +.+.++.||+.+|+-.| |.++.+.
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~ 186 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYR 186 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHH
Confidence 77788888888877554 46688999998543 12 34667889999997554 4443321
Q ss_pred --------CCCCcceecCC-CCc----HHHHH----HHHhCCCCCCcEEEeccCCccC--------CC------------
Q 007038 199 --------RTPSTDIVCPM-YMR----VWDIV----MIAKDPTETRPLILCEYSHAMG--------NS------------ 241 (620)
Q Consensus 199 --------~~~~~Di~~~~-Y~~----~~~~~----~~~~~~~~~kP~i~~Eygh~~g--------ns------------ 241 (620)
.....|+++.. |+. .+.+. ....+. +||++++|.+.... |.
T Consensus 187 ~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~~ry--~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~ 264 (332)
T PF07745_consen 187 WFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLASRY--GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPA 264 (332)
T ss_dssp HHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHHHHH--T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-S
T ss_pred HHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHHHHh--CCeeEEEeccccccccccccccccCccccccCCCCC
Confidence 12346888874 543 23332 222333 79999999985432 21
Q ss_pred -CccHH----HHHHHHHhc--CCeeeeeeec
Q 007038 242 -NGNIH----EYWEAIDST--FGLQGGFIWD 265 (620)
Q Consensus 242 -~g~~~----~y~~~~~~~--~~~~G~fiW~ 265 (620)
+.+.. +..+.+.+. ....|.|.|+
T Consensus 265 t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWe 295 (332)
T PF07745_consen 265 TPQGQADFLRDLINAVKNVPNGGGLGVFYWE 295 (332)
T ss_dssp SHHHHHHHHHHHHHHHHTS--TTEEEEEEE-
T ss_pred CHHHHHHHHHHHHHHHHHhccCCeEEEEeec
Confidence 11233 344555554 4788999995
No 21
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.55 E-value=0.0001 Score=81.86 Aligned_cols=89 Identities=18% Similarity=0.073 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCCh-------------hHHHHHHhhcCCeEEeecc-----ccccCccccc
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQH-------------PRWYELCDLFGLYMIDEAN-----IETHGFYFSE 128 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p~~-------------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~~ 128 (620)
.....++||++||++|+|+.|+|. .|.. ..+++.|-+.||-.+..+. .+.+- .+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~---~g 132 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED---YG 132 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH---HT
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee---cc
Confidence 468999999999999999999963 3441 2578899999999997663 21110 01
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
. ..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 133 g----w~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~T~NEp 167 (455)
T PF00232_consen 133 G----WLNRETVDWFARYAEFVFERFGDR--VKYWITFNEP 167 (455)
T ss_dssp G----GGSTHHHHHHHHHHHHHHHHHTTT--BSEEEEEETH
T ss_pred c----ccCHHHHHHHHHHHHHHHHHhCCC--cceEEecccc
Confidence 1 135677888999999999999875 7789999998
No 22
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.0043 Score=62.27 Aligned_cols=188 Identities=11% Similarity=0.056 Sum_probs=125.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEccC--CCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHH
Q 007038 65 PRVGKTNIESCMVKDLVLMKQNNINAVRNSH--YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (620)
Q Consensus 65 p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h--~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~ 142 (620)
+.-|+.-+.++++.||+++|.... .||+.. ...-+.++-++...||.|...... .++ -...
T Consensus 54 n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~--------------tdd--~~~~ 116 (305)
T COG5309 54 NDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWP--------------TDD--IHDA 116 (305)
T ss_pred CCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEee--------------ccc--hhhh
Confidence 456888999999999999999988 999955 223467889999999999876632 222 2334
Q ss_pred HHHHHHHHHHHhCCCceEEEEecCCCCCCCc---------cHHHHHHHHHHhCCCCeEecCCCC-------CCCCCccee
Q 007038 143 MMDRVIGMVERDKNHASIICWSLGNEAGHGP---------NHSAAAGWIRGKDPSRLLHYEGGG-------SRTPSTDIV 206 (620)
Q Consensus 143 ~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~---------~~~~~~~~ik~~DptRpv~~~~~~-------~~~~~~Di~ 206 (620)
..+.+...++.+..-+.|..-.+|||.-++. .+......+|+.+-+-||+....+ .....+|++
T Consensus 117 ~~~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T~dsw~~~~~np~l~~~SDfi 196 (305)
T COG5309 117 VEKTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTTVDSWNVVINNPELCQASDFI 196 (305)
T ss_pred HHHHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceeecccceeeeCChHHhhhhhhh
Confidence 4457778888889999999999999997643 234556667888888888754321 113456766
Q ss_pred cCC---CCc-----------H-HHHHHHHhCCCCCCcEEEeccCCcc-CC-------CCccHHHHHHHHHhc--CCeeee
Q 007038 207 CPM---YMR-----------V-WDIVMIAKDPTETRPLILCEYSHAM-GN-------SNGNIHEYWEAIDST--FGLQGG 261 (620)
Q Consensus 207 ~~~---Y~~-----------~-~~~~~~~~~~~~~kP~i~~Eygh~~-gn-------s~g~~~~y~~~~~~~--~~~~G~ 261 (620)
..+ |-. + ++++..-..+..+|+++++|-|..- |. +..+.+.+|+.+... ..-.-.
T Consensus 197 a~N~~aYwd~~~~a~~~~~f~~~q~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~ 276 (305)
T COG5309 197 AANAHAYWDGQTVANAAGTFLLEQLERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDV 276 (305)
T ss_pred hcccchhccccchhhhhhHHHHHHHHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccE
Confidence 542 421 1 2233332333345999999998431 21 245677888877662 122345
Q ss_pred eeeccccc
Q 007038 262 FIWDWVDQ 269 (620)
Q Consensus 262 fiW~~~D~ 269 (620)
|+++-+|+
T Consensus 277 fvfeAFdd 284 (305)
T COG5309 277 FVFEAFDD 284 (305)
T ss_pred EEeeeccc
Confidence 77777773
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.51 E-value=0.0008 Score=71.25 Aligned_cols=231 Identities=17% Similarity=0.119 Sum_probs=132.5
Q ss_pred CCCCCCHHHHHHH--HHHHHHcCCcEEEcc--C-----CC--------ChhHHHHHHhhcCCeEEeeccccccCcccccC
Q 007038 67 VGKTNIESCMVKD--LVLMKQNNINAVRNS--H-----YP--------QHPRWYELCDLFGLYMIDEANIETHGFYFSEH 129 (620)
Q Consensus 67 ~G~~~~~e~~~~D--l~lmK~~g~NavR~~--h-----~p--------~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~ 129 (620)
.|.+++...+..+ ...+-...||.|=+. . .| ..+.++++|.+.||.|--=.-++ |...+. .
T Consensus 12 ~G~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~~~P~-w 89 (320)
T PF00331_consen 12 FGAAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVW-HSQTPD-W 89 (320)
T ss_dssp EEEEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SSSS-H-H
T ss_pred EEEEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEE-cccccc-e
Confidence 4555554444443 444445567777552 1 11 22589999999999986443332 221110 1
Q ss_pred CCCC--CCCH---HHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCc------------------cHHHHHHHHHHhC
Q 007038 130 LKHP--TMEP---SWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP------------------NHSAAAGWIRGKD 186 (620)
Q Consensus 130 ~~~~--~~~~---~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~------------------~~~~~~~~ik~~D 186 (620)
+... .+.. ...+.+.+++++++.|+++...|..|.+-||+-... .+..+.+++|+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~ 169 (320)
T PF00331_consen 90 VFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREAD 169 (320)
T ss_dssp HHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHH
T ss_pred eeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhC
Confidence 1000 1222 367778889999999999999999999999984321 2467889999999
Q ss_pred CCCeEecCCCCCC------------------CCCcceecC--C----CCcHHHHHHHHhCC-CCCCcEEEeccCCccCCC
Q 007038 187 PSRLLHYEGGGSR------------------TPSTDIVCP--M----YMRVWDIVMIAKDP-TETRPLILCEYSHAMGNS 241 (620)
Q Consensus 187 ptRpv~~~~~~~~------------------~~~~Di~~~--~----Y~~~~~~~~~~~~~-~~~kP~i~~Eygh~~gns 241 (620)
|+-...+..-+.. ...+|-++. | +. .+.+...++.. ..+.|+.+||+--.....
T Consensus 170 P~a~L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~ 248 (320)
T PF00331_consen 170 PNAKLFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNALDRFASLGLPIHITELDVRDDDN 248 (320)
T ss_dssp TTSEEEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHHHHHHTTTSEEEEEEEEEESSST
T ss_pred CCcEEEeccccccchHHHHHHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHHHHHHHcCCceEEEeeeecCCCC
Confidence 9743333211000 111454443 1 23 34433333211 126999999994211111
Q ss_pred C----------ccHHHHHHHHHhcC--CeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccCceecCCCCC
Q 007038 242 N----------GNIHEYWEAIDSTF--GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLNGLLWPDRTP 309 (620)
Q Consensus 242 ~----------g~~~~y~~~~~~~~--~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~Glv~~dR~p 309 (620)
. ..++++.+++.++| .+.|-.+|.+.|........ + ...-+|++.|-+|
T Consensus 249 ~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~---------------~----~~~~~lfd~~~~~ 309 (320)
T PF00331_consen 249 PPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYSWRPDT---------------P----PDRPLLFDEDYQP 309 (320)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGH---------------S----EG--SSB-TTSBB
T ss_pred CcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCcccCCC---------------C----CCCCeeECCCcCC
Confidence 1 12457788889999 99999999999943221110 0 1113799999999
Q ss_pred cccHHHHHHh
Q 007038 310 HPALHEVKYV 319 (620)
Q Consensus 310 k~~~~e~k~~ 319 (620)
||+|+.+.++
T Consensus 310 Kpa~~~~~~a 319 (320)
T PF00331_consen 310 KPAYDAIVDA 319 (320)
T ss_dssp -HHHHHHHHH
T ss_pred CHHHHHHHhc
Confidence 9999998865
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0089 Score=60.83 Aligned_cols=188 Identities=18% Similarity=0.235 Sum_probs=103.7
Q ss_pred HHHHH-HHHHHHcCCcEEEc--cCCCChh----------------HHHHHHhhcCCeEEeeccccccCcccccCCCCC--
Q 007038 75 CMVKD-LVLMKQNNINAVRN--SHYPQHP----------------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHP-- 133 (620)
Q Consensus 75 ~~~~D-l~lmK~~g~NavR~--~h~p~~~----------------~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~-- 133 (620)
-.++| ++.+|++|+|.||+ +--|.+. +.-..|..+||.|+.++....| |......+.|
T Consensus 63 g~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf-waDPakQ~kPka 141 (403)
T COG3867 63 GVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF-WADPAKQKKPKA 141 (403)
T ss_pred ChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh-ccChhhcCCcHH
Confidence 34555 56799999999998 3333321 3445566789999998732111 1111111111
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhCCCceEE-EEecCCCCCCC--------ccH-------HHHHHHHHHhCCCCeEec-
Q 007038 134 ---TMEPSWAAAMMDRVIGMVERDKNHASII-CWSLGNEAGHG--------PNH-------SAAAGWIRGKDPSRLLHY- 193 (620)
Q Consensus 134 ---~~~~~~~~~~~~~~~~mV~r~rNHPSIi-~WslgNE~~~g--------~~~-------~~~~~~ik~~DptRpv~~- 193 (620)
.+-...+.+.-+..+..+...++.--.. |=++|||...| .++ .+-+..+|+.||+-.|..
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lH 221 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALH 221 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEE
Confidence 0112223344455666666666555444 55899998543 244 344567899999977653
Q ss_pred -CCCCC-------------CCCCcceecC-CCCcHH----H----HHHHHhCCCCCCcEEEeccCCcc--------CCC-
Q 007038 194 -EGGGS-------------RTPSTDIVCP-MYMRVW----D----IVMIAKDPTETRPLILCEYSHAM--------GNS- 241 (620)
Q Consensus 194 -~~~~~-------------~~~~~Di~~~-~Y~~~~----~----~~~~~~~~~~~kP~i~~Eygh~~--------gns- 241 (620)
..+.. .....||++. +|+..+ . +...+... +|-+|+||-+-+. +|+
T Consensus 222 la~g~~n~~y~~~fd~ltk~nvdfDVig~SyYpyWhgtl~nL~~nl~dia~rY--~K~VmV~Etay~yTlEdgDg~~Nt~ 299 (403)
T COG3867 222 LAEGENNSLYRWIFDELTKRNVDFDVIGSSYYPYWHGTLNNLTTNLNDIASRY--HKDVMVVETAYTYTLEDGDGHENTF 299 (403)
T ss_pred ecCCCCCchhhHHHHHHHHcCCCceEEeeeccccccCcHHHHHhHHHHHHHHh--cCeEEEEEecceeeeccCCCCCCcC
Confidence 32211 1234577765 455322 2 33444444 7899999976321 111
Q ss_pred -----Cc-----------cHHHHHHHHHhcCCe--eeeeeec
Q 007038 242 -----NG-----------NIHEYWEAIDSTFGL--QGGFIWD 265 (620)
Q Consensus 242 -----~g-----------~~~~y~~~~~~~~~~--~G~fiW~ 265 (620)
.+ -+.+..+++.+-|.- .|-|.|+
T Consensus 300 ~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWE 341 (403)
T COG3867 300 PSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWE 341 (403)
T ss_pred CcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEec
Confidence 11 134556666776654 6888886
No 25
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=96.77 E-value=0.0076 Score=67.59 Aligned_cols=232 Identities=16% Similarity=0.153 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHH-HcCCcEEEccCCCCh---------------------hHHHHHHhhcCCeEEeeccccccCc-----
Q 007038 72 IESCMVKDLVLMK-QNNINAVRNSHYPQH---------------------PRWYELCDLFGLYMIDEANIETHGF----- 124 (620)
Q Consensus 72 ~~e~~~~Dl~lmK-~~g~NavR~~h~p~~---------------------~~~~dlcDe~Gi~V~~E~~~~~hg~----- 124 (620)
-++.++..|..++ +.||..||++.--.+ +.++|..-+.||..+.|+...--+.
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 3566777777776 699999999643211 3689999999999998874321111
Q ss_pred ---ccccCCCCCCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEecCCCCCCCc------------cHHHHHHHHHHhCCC
Q 007038 125 ---YFSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGP------------NHSAAAGWIRGKDPS 188 (620)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r-NHPSIi~WslgNE~~~g~------------~~~~~~~~ik~~Dpt 188 (620)
...+....|.+...|.+-+..-++..+.||. +.=+--.|.+-||+.... .++..++.||+.||+
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~ 196 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPE 196 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 0001122245556787777777788887764 233334678999985421 136778889999998
Q ss_pred CeEecC---CCCC------------CCCCcceecCC-CCcH----------------HH-------H-HHHHhCCCCCCc
Q 007038 189 RLLHYE---GGGS------------RTPSTDIVCPM-YMRV----------------WD-------I-VMIAKDPTETRP 228 (620)
Q Consensus 189 Rpv~~~---~~~~------------~~~~~Di~~~~-Y~~~----------------~~-------~-~~~~~~~~~~kP 228 (620)
=.|.-- .+.. .....|++|.+ |+.. .. + +.+.+...+..|
T Consensus 197 ~~vGGp~~~~~~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 276 (486)
T PF01229_consen 197 LKVGGPAFAWAYDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDINENMYERIEDSRRLFPELKETRPIINDEADPNLP 276 (486)
T ss_dssp SEEEEEEEETT-THHHHHHHHHHHHCT---SEEEEEEE-BESESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--
T ss_pred CcccCccccccHHHHHHHHHHHHhcCCCCCCEEEEEecccccccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCc
Confidence 665411 1100 12346888875 4310 11 1 112234445789
Q ss_pred EEEeccCCccCCCC----ccHH-HHH-H-HHHhcC-CeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCcccccC
Q 007038 229 LILCEYSHAMGNSN----GNIH-EYW-E-AIDSTF-GLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDLNFCLN 300 (620)
Q Consensus 229 ~i~~Eygh~~gns~----g~~~-~y~-~-~~~~~~-~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~~f~~~ 300 (620)
+.++||+....+.. ..+. .|. + .+.... .+.+...|.+.|.- .+.+.. ..| -+..-
T Consensus 277 ~~~tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~F----ee~~~~---------~~p---f~ggf 340 (486)
T PF01229_consen 277 LYITEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRF----EENGTP---------RKP---FHGGF 340 (486)
T ss_dssp EEEEEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS-------TTSS----------SSS---SSS-S
T ss_pred eeecccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhh----hccCCC---------CCc---eecch
Confidence 99999985443221 1111 221 2 334443 35666778888821 122211 011 11234
Q ss_pred ceecCCCCCcccHHHHHHh
Q 007038 301 GLLWPDRTPHPALHEVKYV 319 (620)
Q Consensus 301 Glv~~dR~pk~~~~e~k~~ 319 (620)
||++.+.-+||+++.+.-+
T Consensus 341 GLlt~~gI~KPa~~A~~~L 359 (486)
T PF01229_consen 341 GLLTKLGIPKPAYYAFQLL 359 (486)
T ss_dssp -SEECCCEE-HHHHHHHHH
T ss_pred hhhhccCCCchHHHHHHHH
Confidence 9999999999998876543
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=96.11 E-value=0.022 Score=62.85 Aligned_cols=94 Identities=19% Similarity=0.174 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEEeeccccccCcccccCCC--
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHGFYFSEHLK-- 131 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~-- 131 (620)
-....+++||++||++|+|++|++. .|. + ..+++.|.+.||.++..+. | |.....+.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~---H-fd~P~~l~~~ 126 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY---H-WDLPQALEDR 126 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec---c-CCccHHHHhc
Confidence 3568999999999999999999953 333 1 2578999999999998773 1 21000000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Q 007038 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (620)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (620)
--..+++..+.+.+.++.+++++++ .|=.|..-||+.
T Consensus 127 gGw~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~ 163 (427)
T TIGR03356 127 GGWLNRDTAEWFAEYAAVVAERLGD--RVKHWITLNEPW 163 (427)
T ss_pred CCCCChHHHHHHHHHHHHHHHHhCC--cCCEEEEecCcc
Confidence 0024577888999999999999998 467788888874
No 27
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.042 Score=60.21 Aligned_cols=111 Identities=20% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHHHHHHHHHcCCcEEEcc-------CCC--Ch-----------hHHHHHHhhcCCeEEeeccccccCcc-------ccc
Q 007038 76 MVKDLVLMKQNNINAVRNS-------HYP--QH-----------PRWYELCDLFGLYMIDEANIETHGFY-------FSE 128 (620)
Q Consensus 76 ~~~Dl~lmK~~g~NavR~~-------h~p--~~-----------~~~~dlcDe~Gi~V~~E~~~~~hg~~-------~~~ 128 (620)
.+.++..||++|||+||.- |.. ++ .+..+.|.++||+|+.+. |+.. ...
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~----H~~~~~~~~~~~s~ 150 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL----HGYPGGNNGHEHSG 150 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe----cccCCCCCCcCccc
Confidence 4899999999999999991 221 11 145788999999999885 3322 000
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCC---Cc----cHHHHHHHH-HHhCCCCeE
Q 007038 129 HL-KHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH---GP----NHSAAAGWI-RGKDPSRLL 191 (620)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~---g~----~~~~~~~~i-k~~DptRpv 191 (620)
.. .+ ....+-.+.+.+-.+.+..|+++.+.||+..+-||+.. .+ ...+.++.+ +++....+.
T Consensus 151 ~~~~~-~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~~~~ 221 (407)
T COG2730 151 YTSDY-KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSNAPH 221 (407)
T ss_pred ccccc-cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhcCce
Confidence 00 00 11233456778889999999999999999999999973 11 124566666 577777754
No 28
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.23 E-value=0.074 Score=59.37 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcc-----CCCCh------------hHHHHHHhhcCCeEEeeccccccC-c-ccccCCCC
Q 007038 72 IESCMVKDLVLMKQNNINAVRNS-----HYPQH------------PRWYELCDLFGLYMIDEANIETHG-F-YFSEHLKH 132 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~-----h~p~~------------~~~~dlcDe~Gi~V~~E~~~~~hg-~-~~~~~~~~ 132 (620)
...+.++||++||++|+|+.|+| ..|+. .++++.|-++||-.+..+.-...- + ...+.
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GG--- 128 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSNGD--- 128 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHcCC---
Confidence 56889999999999999999996 34431 257899999999988766311000 0 00011
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Q 007038 133 PTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (620)
Q Consensus 133 ~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (620)
..+++..+.+.+.++.+++++.+ |=.|..-||+.
T Consensus 129 -W~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~ 162 (469)
T PRK13511 129 -WLNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIG 162 (469)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchh
Confidence 24667788899999999999998 89999999983
No 29
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=95.18 E-value=0.064 Score=59.91 Aligned_cols=90 Identities=12% Similarity=0.117 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEEeecc-----ccccCccccc
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEAN-----IETHGFYFSE 128 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-------~------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~~ 128 (620)
.....++||++||++|+|+.|+|. .|. . ..+++.|-+.||-.+..+. .+-+- ..+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~--~yG 144 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQ--QYG 144 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHH--hcC
Confidence 457889999999999999999962 332 2 2578999999999987762 11100 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
. ..+++..+.+.+.++.+++++++. |=.|..-||+
T Consensus 145 G----W~n~~~~~~F~~Ya~~~f~~fgdr--Vk~WiT~NEp 179 (477)
T PRK15014 145 S----WTNRKVVDFFVRFAEVVFERYKHK--VKYWMTFNEI 179 (477)
T ss_pred C----CCChHHHHHHHHHHHHHHHHhcCc--CCEEEEecCc
Confidence 1 245778889999999999999876 6678888886
No 30
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.81 E-value=0.12 Score=57.76 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEcc-----CCCC-----h-------hHHHHHHhhcCCeEEeecc-----ccccCccccc
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNS-----HYPQ-----H-------PRWYELCDLFGLYMIDEAN-----IETHGFYFSE 128 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~-----h~p~-----~-------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~~ 128 (620)
-...+.++||+|||++|+|+.|+| ..|. . ..+++.|-+.||-.+..+. .+-+- .+
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~---~G 126 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHS---NG 126 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHH---cC
Confidence 356889999999999999999996 2443 1 2577889999999987663 11100 01
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (620)
. ..+++..+.+.+.++.+++++. . |=.|..-||+.
T Consensus 127 G----W~n~~~v~~F~~YA~~~f~~fg-d--Vk~WiT~NEP~ 161 (467)
T TIGR01233 127 D----FLNRENIEHFIDYAAFCFEEFP-E--VNYWTTFNEIG 161 (467)
T ss_pred C----CCCHHHHHHHHHHHHHHHHHhC-C--CCEEEEecchh
Confidence 1 2467788899999999999998 3 88999999984
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=94.56 E-value=3.1 Score=43.56 Aligned_cols=205 Identities=17% Similarity=0.136 Sum_probs=114.4
Q ss_pred hhHHHHHHhhcCCeEEeeccccccCcccccCCC-CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCC------
Q 007038 99 HPRWYELCDLFGLYMIDEANIETHGFYFSEHLK-HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGH------ 171 (620)
Q Consensus 99 ~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~-~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~------ 171 (620)
.+..++.|.+.||-+=--. +-+|...+ ..+. .-...+...+.+.+.+...++|||+. |+.|.+-||+-.
T Consensus 84 AD~ia~FAr~h~m~lhGHt-LvW~~q~P-~W~~~~e~~~~~~~~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R 159 (345)
T COG3693 84 ADAIANFARKHNMPLHGHT-LVWHSQVP-DWLFGDELSKEALAKMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLR 159 (345)
T ss_pred hHHHHHHHHHcCCeeccce-eeecccCC-chhhccccChHHHHHHHHHHHHHHHHhccCc--eeEEEecccccCCCchhh
Confidence 4578999999998753211 11222111 1110 00234567777888899999999986 999999999842
Q ss_pred ---------C-ccHHHHHHHHHHhCCC-CeEe--cCCCCCC----------------CCCcceecC------CCCcHHHH
Q 007038 172 ---------G-PNHSAAAGWIRGKDPS-RLLH--YEGGGSR----------------TPSTDIVCP------MYMRVWDI 216 (620)
Q Consensus 172 ---------g-~~~~~~~~~ik~~Dpt-Rpv~--~~~~~~~----------------~~~~Di~~~------~Y~~~~~~ 216 (620)
| ..++....++|+.||+ +++. |.-.+.. ..-+|-++. .++.++..
T Consensus 160 ~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~ 239 (345)
T COG3693 160 RSAWYDGGTGPDYIKLAFHIAREADPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKM 239 (345)
T ss_pred hhhhhccCCccHHHHHHHHHHHhhCCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHH
Confidence 1 2356778899999996 5554 2111000 111343332 24555553
Q ss_pred HH-HHhCCCCCCcEEEeccC-CccCCCCccHHHHH----------HHHHhcCC-eeeeeeecccccceeeeeCCCcEEEe
Q 007038 217 VM-IAKDPTETRPLILCEYS-HAMGNSNGNIHEYW----------EAIDSTFG-LQGGFIWDWVDQGLLRELADGTKHWA 283 (620)
Q Consensus 217 ~~-~~~~~~~~kP~i~~Eyg-h~~gns~g~~~~y~----------~~~~~~~~-~~G~fiW~~~D~~~~~~~~~g~~~~~ 283 (620)
.. +.+....+-|+++||.= +..++-.+..+.+. ..+..++. +-+--+|-..|.-....... +.
T Consensus 240 ~~a~~~~~k~Gl~i~VTELD~~~~~P~~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~----~~ 315 (345)
T COG3693 240 RAALLKFSKLGLPIYVTELDMSDYTPDSGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRD----PR 315 (345)
T ss_pred HHHHHHHhhcCCCceEEEeeeeccCCCCccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCc----cC
Confidence 22 22222237899999983 22122223222222 22334454 67788999998543322211 11
Q ss_pred ecCCCCCCCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 284 YGGDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 284 yggd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
++| ..| =+++.+-+|||.++.++.+-.|
T Consensus 316 ~~~---~rP--------l~~D~n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 316 RDG---LRP--------LLFDDNYQPKPAYKAIAEVLAP 343 (345)
T ss_pred cCC---CCC--------cccCCCCCcchHHHHHHHHhcC
Confidence 211 111 2677788999999998865443
No 32
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.70 E-value=0.28 Score=53.87 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CC-------Ch------hHHHHHHhhcCCeEEeec-----cccccCccccc
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YP-------QH------PRWYELCDLFGLYMIDEA-----NIETHGFYFSE 128 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p-------~~------~~~~dlcDe~Gi~V~~E~-----~~~~hg~~~~~ 128 (620)
...+.++||+|||+||+|+.|+|. .| +. ..++|-|-++||..+..+ |++-+. ..+
T Consensus 57 ~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~--~yg 134 (460)
T COG2723 57 FYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQK--PYG 134 (460)
T ss_pred hhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhh--ccC
Confidence 368899999999999999999962 33 22 257899999999998766 222111 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (620)
. ..+..-.+.+.+.++.+.+|+++ -|=.|...||+.
T Consensus 135 G----W~nR~~i~~F~~ya~~vf~~f~d--kVk~W~TFNE~n 170 (460)
T COG2723 135 G----WENRETVDAFARYAATVFERFGD--KVKYWFTFNEPN 170 (460)
T ss_pred C----ccCHHHHHHHHHHHHHHHHHhcC--cceEEEEecchh
Confidence 1 14555677888889999999886 477899999984
No 33
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=93.54 E-value=0.64 Score=50.44 Aligned_cols=103 Identities=25% Similarity=0.392 Sum_probs=67.6
Q ss_pred CCHHHHHHHH-HHHHHcCCcEEEcc------CC-------CCh--------------------hHHHHHHhhcCCeEEee
Q 007038 71 NIESCMVKDL-VLMKQNNINAVRNS------HY-------PQH--------------------PRWYELCDLFGLYMIDE 116 (620)
Q Consensus 71 ~~~e~~~~Dl-~lmK~~g~NavR~~------h~-------p~~--------------------~~~~dlcDe~Gi~V~~E 116 (620)
.+.+-+|+|+ +++|++.+-.||.- .| |-+ -+|+++|...|.-++..
T Consensus 45 ~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~a 124 (501)
T COG3534 45 ADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIA 124 (501)
T ss_pred cchhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEE
Confidence 3556678876 47999999999982 11 111 28999999999988888
Q ss_pred ccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCce------------------EEEEecCCCCCC----Cc-
Q 007038 117 ANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHAS------------------IICWSLGNEAGH----GP- 173 (620)
Q Consensus 117 ~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPS------------------Ii~WslgNE~~~----g~- 173 (620)
.|+.+-|. +.++++|+ |-|||. |=+|+||||... |.
T Consensus 125 vN~Gsrgv--------------------d~ar~~vE-Y~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G~~ 183 (501)
T COG3534 125 VNLGSRGV--------------------DEARNWVE-YCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCGHK 183 (501)
T ss_pred EecCCccH--------------------HHHHHHHH-HccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccccc
Confidence 87654331 23344443 445554 889999999932 21
Q ss_pred -------cHHHHHHHHHHhCCC-CeEecC
Q 007038 174 -------NHSAAAGWIRGKDPS-RLLHYE 194 (620)
Q Consensus 174 -------~~~~~~~~ik~~Dpt-Rpv~~~ 194 (620)
...+..++.|-.||+ -.+.+.
T Consensus 184 ~a~EY~~~A~e~~k~~k~~d~t~e~~v~g 212 (501)
T COG3534 184 TAPEYGRLANEYRKYMKYFDPTIENVVCG 212 (501)
T ss_pred cCHHHHHHHHHHHHHHhhcCccccceEEe
Confidence 234567777888886 334443
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=93.36 E-value=0.28 Score=54.73 Aligned_cols=93 Identities=15% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC------h-------hHHHHHHhhcCCeEEeecccccc-Ccc--cccC
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ------H-------PRWYELCDLFGLYMIDEANIETH-GFY--FSEH 129 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h-----~p~------~-------~~~~dlcDe~Gi~V~~E~~~~~h-g~~--~~~~ 129 (620)
-...+.++|+++||++|+|+.|+|. .|. . ..+++.|-++||-++..+.-... .+- ..+.
T Consensus 68 D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GG 147 (474)
T PRK09852 68 DFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGS 147 (474)
T ss_pred chhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCC
Confidence 3567899999999999999999952 332 1 25788999999999877632100 000 0011
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 148 ----W~~~~~~~~F~~ya~~~~~~fgd~--Vk~WiTfNEP 181 (474)
T PRK09852 148 ----WRNRKMVEFFSRYARTCFEAFDGL--VKYWLTFNEI 181 (474)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHhcCc--CCeEEeecch
Confidence 245778888999999999998864 3456666665
No 35
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=92.77 E-value=0.43 Score=53.42 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEEeecc-----ccccCcccc
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEAN-----IETHGFYFS 127 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-------~------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~ 127 (620)
-...+.++||++||++|+|+.|+|. .|. . .++++.|-+.||-.+..+. .+-. ...
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~--~~y 141 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLV--TEY 141 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHH--Hhc
Confidence 3568899999999999999999962 332 1 2578999999998887662 1110 000
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
+. ..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 142 GG----W~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEp 177 (476)
T PRK09589 142 GG----WRNRKLIDFFVRFAEVVFTRYKDK--VKYWMTFNEI 177 (476)
T ss_pred CC----cCChHHHHHHHHHHHHHHHHhcCC--CCEEEEecch
Confidence 01 145667788899999999998753 4456666664
No 36
>PLN02998 beta-glucosidase
Probab=92.74 E-value=0.35 Score=54.30 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEEeecc-----ccccCccccc
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEAN-----IETHGFYFSE 128 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~~ 128 (620)
-...+.++||++||++|+|+.|+|. .|. + ..+++.|-+.||-.+..+. .+-+- ..+
T Consensus 79 D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~--~yG 156 (497)
T PLN02998 79 DQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALED--EYG 156 (497)
T ss_pred cHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hhC
Confidence 3578999999999999999999962 342 1 2578999999998887652 11100 001
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
. ..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 157 G----W~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP 191 (497)
T PLN02998 157 G----WLSQEIVRDFTAYADTCFKEFGDR--VSHWTTINEV 191 (497)
T ss_pred C----cCCchHHHHHHHHHHHHHHHhcCc--CCEEEEccCc
Confidence 1 135567788889999999998763 4567777776
No 37
>PLN02814 beta-glucosidase
Probab=92.63 E-value=0.42 Score=53.79 Aligned_cols=93 Identities=12% Similarity=-0.054 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEEeeccccccC-c-cc-ccCCC
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHG-F-YF-SEHLK 131 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~hg-~-~~-~~~~~ 131 (620)
...+.++||++||++|+|+.|+|. .|+ . .++.+.|-++||-.+..+.-...- + .. .+.
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGG-- 152 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGG-- 152 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCC--
Confidence 578999999999999999999963 343 1 257899999999988766211000 0 00 001
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCC
Q 007038 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAG 170 (620)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~ 170 (620)
..+++..+.+.+.++.+++++.+. |=.|..-||+.
T Consensus 153 --W~n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEP~ 187 (504)
T PLN02814 153 --WINRKIIEDFTAFADVCFREFGED--VKLWTTINEAT 187 (504)
T ss_pred --cCChhHHHHHHHHHHHHHHHhCCc--CCEEEeccccc
Confidence 145667788889999999998763 55677777763
No 38
>PLN02849 beta-glucosidase
Probab=92.60 E-value=0.5 Score=53.21 Aligned_cols=92 Identities=16% Similarity=0.059 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCC-----h-------hHHHHHHhhcCCeEEeeccccccC-c-cc-ccCCC
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQ-----H-------PRWYELCDLFGLYMIDEANIETHG-F-YF-SEHLK 131 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-----~-------~~~~dlcDe~Gi~V~~E~~~~~hg-~-~~-~~~~~ 131 (620)
...+.++||++||++|+|+.|+|. .|. + ..+.+.|-+.||-.+..+.-...- + .. .+.
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGG-- 154 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGG-- 154 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCC--
Confidence 578999999999999999999962 443 1 257899999999988766311000 0 00 011
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 132 HPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 155 --W~nr~~v~~F~~YA~~~f~~fgDr--Vk~WiT~NEP 188 (503)
T PLN02849 155 --WINRRIIKDFTAYADVCFREFGNH--VKFWTTINEA 188 (503)
T ss_pred --cCCchHHHHHHHHHHHHHHHhcCc--CCEEEEecch
Confidence 145567788889999999998763 4567777776
No 39
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=91.91 E-value=0.65 Score=52.00 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccC-----CCC-------h------hHHHHHHhhcCCeEEeecc-----ccccCcccc
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSH-----YPQ-------H------PRWYELCDLFGLYMIDEAN-----IETHGFYFS 127 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h-----~p~-------~------~~~~dlcDe~Gi~V~~E~~-----~~~hg~~~~ 127 (620)
-...+.++||++||++|+|+.|+|. .|. . .++++.|-+.||-.+..+. .+-+- ..
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~--~~ 147 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIE--EY 147 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHh--hc
Confidence 3578999999999999999999962 332 1 2578899999998887662 21100 00
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 128 EHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
+. ..+++..+.+.+.++.+++++.+. |=.|..-||+
T Consensus 148 GG----W~n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP 183 (478)
T PRK09593 148 GG----WRNRKMVGFYERLCRTLFTRYKGL--VKYWLTFNEI 183 (478)
T ss_pred CC----CCChHHHHHHHHHHHHHHHHhcCc--CCEEEeecch
Confidence 01 145667788889999999998753 4456666664
No 40
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=89.93 E-value=0.18 Score=50.72 Aligned_cols=96 Identities=15% Similarity=-0.033 Sum_probs=74.9
Q ss_pred CCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEeeecCCCCCC-------C---CCCCCHH--HH---------HHHHH
Q 007038 23 SGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPR-------V---GKTNIES--CM---------VKDLV 81 (620)
Q Consensus 23 ~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~-------~---G~~~~~e--~~---------~~Dl~ 81 (620)
++...|-+....+.|+|.+-...+..+|+|+.||.+|-|++.-. + |-..+-+ .. ..|..
T Consensus 80 d~~lrdfv~~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~~~dn~ 159 (297)
T KOG2024|consen 80 DWRLRDFVGLVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLPAIDNN 159 (297)
T ss_pred CCccccceeeeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccccccCc
Confidence 45567888999999999999999999999999999999987321 1 1111111 10 23555
Q ss_pred HHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeecc
Q 007038 82 LMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEAN 118 (620)
Q Consensus 82 lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~ 118 (620)
+.-..+-|+-=++|+|........|+.+++.|++|.+
T Consensus 160 L~~~t~~~~~~~dffnYag~~~sv~l~t~p~vyi~~~ 196 (297)
T KOG2024|consen 160 LLSWTGPNSFCFDFFNYAGEQRSVCLYTTPVVYIEDI 196 (297)
T ss_pred ccccccCCcccccCCCchhhheeeeeccCCeEEecCc
Confidence 7777788888889999999999999999999998875
No 41
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=82.15 E-value=3.7 Score=44.71 Aligned_cols=76 Identities=13% Similarity=0.275 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCCC-------hhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHH
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYPQ-------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAM 143 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p~-------~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~ 143 (620)
.+.+.+++||++.|++||-+.=+-.... -...|+.|++.|+.+...++...-+ . |.
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~-----------~---~~--- 76 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNSLG-----------P---WS--- 76 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccCCC-----------C---CC---
Confidence 5899999999999999999876643311 2368999999999998887653211 1 11
Q ss_pred HHHHHHHHHHhCCCceEEEE
Q 007038 144 MDRVIGMVERDKNHASIICW 163 (620)
Q Consensus 144 ~~~~~~mV~r~rNHPSIi~W 163 (620)
.+++.++|+++.+||+-+-+
T Consensus 77 ~~~~~~~i~~y~~~pa~~~~ 96 (386)
T PF03659_consen 77 QDELIALIKKYAGHPAYFRY 96 (386)
T ss_pred HHHHHHHHHHHcCChhHEeE
Confidence 16889999999999996653
No 42
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=77.27 E-value=33 Score=36.73 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCcEEEc---cC-----CCCh----------------hHHHHHHhhcCCeEEeeccc-ccc-CcccccC
Q 007038 76 MVKDLVLMKQNNINAVRN---SH-----YPQH----------------PRWYELCDLFGLYMIDEANI-ETH-GFYFSEH 129 (620)
Q Consensus 76 ~~~Dl~lmK~~g~NavR~---~h-----~p~~----------------~~~~dlcDe~Gi~V~~E~~~-~~h-g~~~~~~ 129 (620)
..+-++++|++|+.-|=+ +| +|.. .+|.+.|.++||.+..=... .+| .......
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~ 172 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDE 172 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSC
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCc
Confidence 345589999999998765 22 1100 37999999999998642211 111 1100000
Q ss_pred C-C------CCCCCHHH-HHHHHHHHHHHHHHhCCCceEEEEecCCCCCC-CccHHHHHHHHHHhCCCCeEecC
Q 007038 130 L-K------HPTMEPSW-AAAMMDRVIGMVERDKNHASIICWSLGNEAGH-GPNHSAAAGWIRGKDPSRLLHYE 194 (620)
Q Consensus 130 ~-~------~~~~~~~~-~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~-g~~~~~~~~~ik~~DptRpv~~~ 194 (620)
. . .+...+.+ .+.+..++++++.+| +|.++-+..+..... ......+++++|++-|.-.|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y--~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~qp~~ii~~r 244 (346)
T PF01120_consen 173 EGDENGPADGPGNWQRYYNEYWLAQLRELLTRY--KPDILWFDGGWPDPDEDWDSAELYNWIRKLQPDVIINNR 244 (346)
T ss_dssp HCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCS--TESEEEEESTTSCCCTHHHHHHHHHHHHHHSTTSEEECC
T ss_pred cCCcccccccchhhHhHhhhhhHHHHHHHHhCC--CcceEEecCCCCccccccCHHHHHHHHHHhCCeEEEecc
Confidence 0 0 00001223 336778999999999 999999998877532 23468899999999997777643
No 43
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=76.11 E-value=32 Score=36.33 Aligned_cols=96 Identities=25% Similarity=0.180 Sum_probs=50.5
Q ss_pred eeecCCCCCCCCCCC-CHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCC
Q 007038 57 GVNRHEHHPRVGKTN-IESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTM 135 (620)
Q Consensus 57 Gvn~h~~~p~~G~~~-~~e~~~~Dl~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~ 135 (620)
|+|+ ...|..+ ++... +.++|+.||..||+. -.++..+....--||-|+...+-+. ...+ ..
T Consensus 2 Gvny----G~~~~nlp~p~~v---v~l~ks~~i~~vri~--d~~~~iL~a~a~S~i~v~v~vpN~~-----l~~l---a~ 64 (310)
T PF00332_consen 2 GVNY----GRVGNNLPSPCKV---VSLLKSNGITKVRIY--DADPSILRAFAGSGIEVMVGVPNED-----LASL---AS 64 (310)
T ss_dssp EEEE-------SSS---HHHH---HHHHHHTT--EEEES--S--HHHHHHHTTS--EEEEEE-GGG-----HHHH---HH
T ss_pred eEec----cCccCCCCCHHHH---HHHHHhcccccEEee--cCcHHHHHHHhcCCceeeeccChHH-----HHHh---cc
Confidence 6775 2334333 44444 667899999999985 4667888888888999998775221 0001 11
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCC
Q 007038 136 EPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHG 172 (620)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g 172 (620)
.+.....=++.-|..+...-.|-.=.+|||...+
T Consensus 65 ---~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~ 98 (310)
T PF00332_consen 65 ---SQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG 98 (310)
T ss_dssp ---HHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC
T ss_pred ---CHHHHhhhhhhcccccCcccceeeeecccccccC
Confidence 1122222244455555555558888899999764
No 44
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=75.60 E-value=15 Score=33.65 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCcEEEc---cC-----CCC-----h--------hHHHHHHhhcCCeEEeeccccc-------c------
Q 007038 77 VKDLVLMKQNNINAVRN---SH-----YPQ-----H--------PRWYELCDLFGLYMIDEANIET-------H------ 122 (620)
Q Consensus 77 ~~Dl~lmK~~g~NavR~---~h-----~p~-----~--------~~~~dlcDe~Gi~V~~E~~~~~-------h------ 122 (620)
++-++.||++|+|+|-+ +| ||. + .++.++|.+.||-|+.=..+.. |
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HPeW~~~ 82 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHPEWFVR 82 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCCceeeE
Confidence 34577899999999887 22 331 1 3788999999999974332111 1
Q ss_pred ---Cc-------ccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 007038 123 ---GF-------YFSEHLKHPTMEPSWAAAMMDRVIGMVERD 154 (620)
Q Consensus 123 ---g~-------~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~ 154 (620)
|- ...+....+.++ .+++.+.++++++++++
T Consensus 83 ~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 83 DADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDRY 123 (132)
T ss_pred CCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHcC
Confidence 10 000111123344 47788888899999887
No 45
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=65.59 E-value=2.1e+02 Score=31.18 Aligned_cols=191 Identities=14% Similarity=0.060 Sum_probs=101.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHc-CCcEEEc-cCCC-----ChhHHHHHHhhcCCeEE-eeccccccCcccccCCCCCCC
Q 007038 64 HPRVGKTNIESCMVKDLVLMKQN-NINAVRN-SHYP-----QHPRWYELCDLFGLYMI-DEANIETHGFYFSEHLKHPTM 135 (620)
Q Consensus 64 ~p~~G~~~~~e~~~~Dl~lmK~~-g~NavR~-~h~p-----~~~~~~dlcDe~Gi~V~-~E~~~~~hg~~~~~~~~~~~~ 135 (620)
.+..|.+-+.+.+.+|+..++.+ ++. -+. -|.| +-.++-++++++||-|. ...+.-.|.....+. ....
T Consensus 30 f~~~g~~r~~~e~~~d~~~v~~L~~~~-~~v~lH~~~d~~~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~~~GS--Lt~p 106 (378)
T TIGR02635 30 FHQEGAARNVFEKIEDAALVHRLTGIC-PTVALHIPWDRVEDYEELARYAEELGLKIGAINPNLFQDDDYKFGS--LTHP 106 (378)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCC-CceeeccCCccccCHHHHHHHHHHcCCceeeeeCCccCCcccCCCC--CCCC
Confidence 34467888899999999998876 444 222 1555 33579999999999987 344333333221122 2356
Q ss_pred CHHHHHHHHHHHHHHH--HHhCCCceEEEEe--cCCCCCCCcc-------HHHHHHHHHHhCCCCeEecCCCCCCCCCcc
Q 007038 136 EPSWAAAMMDRVIGMV--ERDKNHASIICWS--LGNEAGHGPN-------HSAAAGWIRGKDPSRLLHYEGGGSRTPSTD 204 (620)
Q Consensus 136 ~~~~~~~~~~~~~~mV--~r~rNHPSIi~Ws--lgNE~~~g~~-------~~~~~~~ik~~DptRpv~~~~~~~~~~~~D 204 (620)
+++.++...+.+++.+ -+.-.-|+|.+|. -.|-++.... .+.+.+......+.--+..|.--+.. -
T Consensus 107 D~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~Kp~Ep---~ 183 (378)
T TIGR02635 107 DKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQDDFRSRKDRLEESLAEVYEHLGADMRLLIEYKFFEP---A 183 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcccCHHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCC---c
Confidence 7888887777777666 3344677999993 2233332211 12233333222222223333211100 0
Q ss_pred eecCCCCcHHHHHHHHhCCCCCCcEEEeccCCccCCCCccHHHHHHHHHhcCCeeeeee
Q 007038 205 IVCPMYMRVWDIVMIAKDPTETRPLILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFI 263 (620)
Q Consensus 205 i~~~~Y~~~~~~~~~~~~~~~~kP~i~~Eygh~~gns~g~~~~y~~~~~~~~~~~G~fi 263 (620)
++....++........+..... =.++.+.||.+ ...++.++...+...+.+.|--+
T Consensus 184 ~y~t~~~~~~~~l~l~~~lg~~-~~v~lD~GH~~--~~Enia~~~a~l~~~~kL~hiH~ 239 (378)
T TIGR02635 184 FYHTDIPDWGTAYALSEKLGER-ALVLVDTGHHA--QGTNIEFIVATLLDEKKLGGFHF 239 (378)
T ss_pred eeeecCCcHHHHHHHHHhhCCC-ceEEeecCccC--CCCCHHHHHHHHhhCCceeEEEe
Confidence 1110012222222223332212 25667999964 23577777777777777765443
No 46
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=60.46 E-value=30 Score=38.72 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=45.0
Q ss_pred CcEEEeccCCccCCC--Ccc---------HHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEe--ecCCCC
Q 007038 227 RPLILCEYSHAMGNS--NGN---------IHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWA--YGGDFG 289 (620)
Q Consensus 227 kP~i~~Eygh~~gns--~g~---------~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~--yggd~~ 289 (620)
.|++++|-|-+.... .|. ++++. +++..-=.+.|-|.|.++|-- -|. |.--||
T Consensus 368 ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~----------Ew~~Gy~~RfG 437 (467)
T TIGR01233 368 KKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVF----------SWSNGYEKRYG 437 (467)
T ss_pred CCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhh----------chhccccCccc
Confidence 379999998654221 111 23333 344433458999999999931 121 111122
Q ss_pred CCCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 290 DTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 290 ~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
-..-| +. +..|+||++++-+|++.+-
T Consensus 438 Lv~VD--~~-----t~~R~~K~S~~wy~~ii~~ 463 (467)
T TIGR01233 438 LFYVD--FD-----TQERYPKKSAHWYKKLAET 463 (467)
T ss_pred eEEEC--CC-----CCccccccHHHHHHHHHHh
Confidence 11111 11 2358899999999998754
No 47
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=58.05 E-value=38 Score=38.09 Aligned_cols=92 Identities=17% Similarity=0.056 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC-----CCChh-----------HHHHHHhh---cCCeEEeeccccccCc--cc-ccC
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH-----YPQHP-----------RWYELCDL---FGLYMIDEANIETHGF--YF-SEH 129 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h-----~p~~~-----------~~~dlcDe---~Gi~V~~E~~~~~hg~--~~-~~~ 129 (620)
..-...+||++||++|+++.|+|. .|... .+=+|+|| .||-....+.-+.+-- .. .+.
T Consensus 89 ~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgG 168 (524)
T KOG0626|consen 89 FYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGG 168 (524)
T ss_pred hhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhcc
Confidence 345789999999999999999962 23221 23345554 5988876653110000 00 001
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCC
Q 007038 130 LKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEA 169 (620)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~ 169 (620)
.-++...+.+++.++-..+++.++ |=.|..-||+
T Consensus 169 ----wLn~~ivedF~~yA~~CF~~fGDr--VK~WiT~NEP 202 (524)
T KOG0626|consen 169 ----WLNPEIVEDFRDYADLCFQEFGDR--VKHWITFNEP 202 (524)
T ss_pred ----ccCHHHHHHHHHHHHHHHHHhccc--ceeeEEeccc
Confidence 134556667777777777777654 4567777776
No 48
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.57 E-value=82 Score=32.19 Aligned_cols=85 Identities=7% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCCC----hh-----------HHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCH
Q 007038 73 ESCMVKDLVLMKQNNINAVRNSHYPQ----HP-----------RWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (620)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NavR~~h~p~----~~-----------~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~ 137 (620)
.+.+++-+++++++|+..|+++.... .+ ++.++|.++|+.+..|. |+... ..+ ..+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn----~~~~~-~~~---~~t- 154 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALET----MAGQG-NEI---GSS- 154 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC----CCCCC-CCC---CCC-
Confidence 45667777788888888887733221 11 34555667788777765 22110 000 111
Q ss_pred HHHHHHHHHHHHHHHHhCCCceE-EEEecCCCCCCC
Q 007038 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHG 172 (620)
Q Consensus 138 ~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g 172 (620)
.+.+.++++....+|.+ +.+.++|=...+
T Consensus 155 ------~~~~~~li~~v~~~~~~g~~lD~~h~~~~g 184 (279)
T cd00019 155 ------FEELKEIIDLIKEKPRVGVCIDTCHIFAAG 184 (279)
T ss_pred ------HHHHHHHHHhcCCCCCeEEEEEhhhHHhcc
Confidence 12344555554457766 777777754333
No 49
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=53.59 E-value=93 Score=31.99 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=48.3
Q ss_pred EEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh--------------hHHHHHHhhcC
Q 007038 45 QLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFG 110 (620)
Q Consensus 45 ~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~~--------------~~~~dlcDe~G 110 (620)
.+-=|+..+.+-|-|-- -+.|.++.-.+..|+.|.+++|-.-|-+. ...-+.||++|
T Consensus 39 ~~g~~~~~~viAGPCsv---------Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~G 109 (286)
T COG2876 39 VIGEGRALRVIAGPCSV---------ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETG 109 (286)
T ss_pred eecCCcceEEEecCccc---------CCHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHHcC
Confidence 33344557888887752 46888999999999999999998543321 24568899999
Q ss_pred CeEEeec
Q 007038 111 LYMIDEA 117 (620)
Q Consensus 111 i~V~~E~ 117 (620)
+.|+.|.
T Consensus 110 l~vvtEv 116 (286)
T COG2876 110 LPVVTEV 116 (286)
T ss_pred CeeEEEe
Confidence 9999997
No 50
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=51.45 E-value=16 Score=36.83 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC---CceEEEEecCCCCCC-----------Cc-------cHHHHHHHHHHhCCCCeEe
Q 007038 135 MEPSWAAAMMDRVIGMVERDKN---HASIICWSLGNEAGH-----------GP-------NHSAAAGWIRGKDPSRLLH 192 (620)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rN---HPSIi~WslgNE~~~-----------g~-------~~~~~~~~ik~~DptRpv~ 192 (620)
.++.|++.+ +.-|+.++.+ .-.|=+|+|.||+.. +. ...++++.||++||+-.|.
T Consensus 101 ~~~~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 101 DNPVYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp SSEEEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred ccHhHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 344566666 4455555544 456999999999942 00 1347889999999997775
No 51
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=50.57 E-value=46 Score=37.29 Aligned_cols=79 Identities=20% Similarity=0.338 Sum_probs=44.6
Q ss_pred CcEEEeccCCccCCC------Cc------cHHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEe--ecCCC
Q 007038 227 RPLILCEYSHAMGNS------NG------NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWA--YGGDF 288 (620)
Q Consensus 227 kP~i~~Eygh~~gns------~g------~~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~--yggd~ 288 (620)
.|++++|-|-+.-.. .. .+.++. +++.+-=.+.|-|.|.++|-- -|. |.--|
T Consensus 369 ~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dnf----------EW~~Gy~~Rf 438 (469)
T PRK13511 369 KKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVF----------SWSNGYEKRY 438 (469)
T ss_pred CCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccccc----------chhcCccCcc
Confidence 489999998653211 11 123333 344333458999999999932 122 22222
Q ss_pred CCCCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
|-..-| |. +..|+||++++-+|++.+-
T Consensus 439 Gl~~VD--~~-----~~~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 439 GLFYVD--FE-----TQERYPKKSAYWYKKLAET 465 (469)
T ss_pred ceEEEC--CC-----cCccccccHHHHHHHHHHh
Confidence 211111 11 1258899999999998653
No 52
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=49.02 E-value=1.4e+02 Score=29.85 Aligned_cols=100 Identities=10% Similarity=0.142 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCC--C---h-----------hHHHHHHhhcCCeEEeecc--ccccCcccccCCCCCCC
Q 007038 74 SCMVKDLVLMKQNNINAVRNSHYP--Q---H-----------PRWYELCDLFGLYMIDEAN--IETHGFYFSEHLKHPTM 135 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h~p--~---~-----------~~~~dlcDe~Gi~V~~E~~--~~~hg~~~~~~~~~~~~ 135 (620)
+.+++-|++++++|+..||+.... . . .++.++|.++|+.+..|.- .++.++ . ..
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~-----~---l~ 155 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGF-----F---LT 155 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCC-----h---hc
Confidence 567788889999999999984321 1 1 1356789999999988851 110010 0 11
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCceE-EEEecCCCCCCCccHHHHHHHHHHhCCCCeEec
Q 007038 136 EPSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 136 ~~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (620)
+ .+++.+++++. +||.+ +.|.++|=...+.....+ ++.+- .|..++
T Consensus 156 t-------~~~~~~li~~v-~~~~~~i~~D~~h~~~~~e~~~~~---i~~~~-~~i~~v 202 (254)
T TIGR03234 156 T-------TEQALAVIDDV-GRENLKLQYDLYHMQRMGGDLART---LAAYA-AHIGHV 202 (254)
T ss_pred C-------HHHHHHHHHHh-CCCCEeEeeehhhhhhhCCCHHHH---HHHhh-ccEeEE
Confidence 1 23455666554 47776 888888866555554443 44432 465554
No 53
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=48.87 E-value=2e+02 Score=29.17 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCcEEEccCC------CC-----hhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHH
Q 007038 74 SCMVKDLVLMKQNNINAVRNSHY------PQ-----HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAA 142 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h~------p~-----~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~ 142 (620)
..+++.|+.++++|+..|=+... +. ...+-++++++||-|..-.+... ++. .+....++..+++
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~-~~~----~~~~~~~~~~r~~ 87 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN-GYP----YNMMLGDEHMRRE 87 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc-CcC----ccccCCCHHHHHH
Confidence 35788999999999999987431 11 24688899999999875332110 111 0111235666666
Q ss_pred HHHHHHHHHHHhC--CCceEEEEe
Q 007038 143 MMDRVIGMVERDK--NHASIICWS 164 (620)
Q Consensus 143 ~~~~~~~mV~r~r--NHPSIi~Ws 164 (620)
.++.++++++.-+ .=++|++|.
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~ 111 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISA 111 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcC
Confidence 6777777775532 344566654
No 54
>PLN02998 beta-glucosidase
Probab=48.73 E-value=37 Score=38.33 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=43.9
Q ss_pred cEEEeccCCccC-CC-C-c-----cHHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEeecCCCCCCCCCc
Q 007038 228 PLILCEYSHAMG-NS-N-G-----NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDFGDTPNDL 295 (620)
Q Consensus 228 P~i~~Eygh~~g-ns-~-g-----~~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~~~~~~d~ 295 (620)
|++++|-|.+.. ++ . . .+.++. +++.+-=.+.|-|.|.++|.-... + .|.--||-.--|
T Consensus 394 pI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~---~-----Gy~~RfGLv~VD- 464 (497)
T PLN02998 394 PVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELF---G-----GYERSFGLLYVD- 464 (497)
T ss_pred CEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---c-----cccCccceEEEC-
Confidence 799999986532 11 1 1 123333 344443458999999999932110 0 111112211001
Q ss_pred ccccCceecCCCCCcccHHHHHHhccc
Q 007038 296 NFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 296 ~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
|... +..|+||++++-+|++.+-
T Consensus 465 -~~~~---~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 465 -FKDP---SLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred -CCCC---CcceecccHHHHHHHHHhc
Confidence 1100 1258899999999998753
No 55
>PLN02361 alpha-amylase
Probab=48.19 E-value=53 Score=36.00 Aligned_cols=68 Identities=9% Similarity=0.178 Sum_probs=50.4
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---------CCCh---------------hHH
Q 007038 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (620)
Q Consensus 47 ~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h---------~p~~---------------~~~ 102 (620)
.-+|..+.|.|.++... . + .--..+.+.|..+|++|+++|=++- |.+. ..+
T Consensus 7 ~~~~~~v~lQ~F~W~~~--~-~--~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~l 81 (401)
T PLN02361 7 IRNGREILLQAFNWESH--K-H--DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSL 81 (401)
T ss_pred hcCCCcEEEEEEeccCC--c-c--HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHH
Confidence 44679999999998532 1 1 2346788889999999999997621 1111 257
Q ss_pred HHHHhhcCCeEEeeccc
Q 007038 103 YELCDLFGLYMIDEANI 119 (620)
Q Consensus 103 ~dlcDe~Gi~V~~E~~~ 119 (620)
.+.|.+.||.|+.++-+
T Consensus 82 i~~~h~~gi~vi~D~V~ 98 (401)
T PLN02361 82 LRKMKQYNVRAMADIVI 98 (401)
T ss_pred HHHHHHcCCEEEEEEcc
Confidence 89999999999998855
No 56
>PLN02849 beta-glucosidase
Probab=47.88 E-value=50 Score=37.34 Aligned_cols=81 Identities=21% Similarity=0.355 Sum_probs=44.9
Q ss_pred CcEEEeccCCccCCC-Cc---------cHHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEe--ecCCCCC
Q 007038 227 RPLILCEYSHAMGNS-NG---------NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWA--YGGDFGD 290 (620)
Q Consensus 227 kP~i~~Eygh~~gns-~g---------~~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~--yggd~~~ 290 (620)
.|++++|-|.+.-+. .+ .+.++. +++.+-=.+.|-|.|.+.|.=. |. |.--||-
T Consensus 386 pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfE----------W~~Gy~~RfGL 455 (503)
T PLN02849 386 PPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYE----------LLKGYEFSFGL 455 (503)
T ss_pred CCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhc----------hhccccCccce
Confidence 389999998653211 11 122333 4454444689999999999321 21 1111221
Q ss_pred CCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 291 TPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 291 ~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
.--| +. +. +..|+||++++-+|++.+-
T Consensus 456 i~VD--~~-~~--~~~R~pK~S~~wy~~ii~~ 482 (503)
T PLN02849 456 YSVN--FS-DP--HRKRSPKLSAHWYSAFLKG 482 (503)
T ss_pred EEEC--CC-CC--CcceecccHHHHHHHHHHh
Confidence 1001 00 00 2358899999999999875
No 57
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=47.32 E-value=2.6e+02 Score=30.46 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcEEEc---cC-----CC------------Ch----hHHHHHHhhcCCeEEeeccc-cccC--cccc-c
Q 007038 77 VKDLVLMKQNNINAVRN---SH-----YP------------QH----PRWYELCDLFGLYMIDEANI-ETHG--FYFS-E 128 (620)
Q Consensus 77 ~~Dl~lmK~~g~NavR~---~h-----~p------------~~----~~~~dlcDe~Gi~V~~E~~~-~~hg--~~~~-~ 128 (620)
++-++++|++|+..|=+ +| ++ +. .++.+.|.+.||.+-.-... .+|. +... .
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~ 163 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTS 163 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCccccccc
Confidence 45588999999998766 22 11 00 37999999999998653321 2221 1000 0
Q ss_pred CCCCCCCCHHHHHHH---HHHHHHHHHHhCCCceEEEEecCCCCCC-CccHHHHHHHHHHhCCCC
Q 007038 129 HLKHPTMEPSWAAAM---MDRVIGMVERDKNHASIICWSLGNEAGH-GPNHSAAAGWIRGKDPSR 189 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~---~~~~~~mV~r~rNHPSIi~WslgNE~~~-g~~~~~~~~~ik~~DptR 189 (620)
....+.+.+.+.+.+ ..++++++.+|. |.++-+..+.+... .....+++++++++-|..
T Consensus 164 ~~~~~~~~~~~~~y~~~~~~Ql~ELit~Yg--pd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 164 SDEDPDNWPRFQEFVDDWLPQLRELVTRYK--PDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVK 226 (384)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhcCC--CceEEEeCCCCCccchhcHHHHHHHHHHhCCCC
Confidence 000112233444444 889999999885 56665555443322 124678999999999976
No 58
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=47.01 E-value=67 Score=36.06 Aligned_cols=84 Identities=25% Similarity=0.212 Sum_probs=47.5
Q ss_pred CCcEEEeccCCccCCC---Cc---------cHHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEeec---C
Q 007038 226 TRPLILCEYSHAMGNS---NG---------NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWAYG---G 286 (620)
Q Consensus 226 ~kP~i~~Eygh~~gns---~g---------~~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yg---g 286 (620)
+.|++++|-|-+.-.. .| .++++. +++..-=.+.|-|.|.++|--. |..| -
T Consensus 365 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~E----------w~~G~y~~ 434 (474)
T PRK09852 365 QKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVS----------ASTGEMSK 434 (474)
T ss_pred CCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccccc----------ccCCCccc
Confidence 5799999998653221 11 123333 3444334589999999999321 2211 1
Q ss_pred CCCCCCCCcccccCceecCCCCCcccHHHHHHhcc
Q 007038 287 DFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (620)
Q Consensus 287 d~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~ 321 (620)
-||-.-- +|...|+=+..|+||++++-+|++.+
T Consensus 435 RfGLv~V--D~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 435 RYGFVYV--DRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred eeeeEEE--CCCCCCCcccceecccHHHHHHHHHH
Confidence 1221100 11222333456889999999999875
No 59
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=46.75 E-value=31 Score=39.90 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcc---CCCCh-----------------------hHHHHHHhhcCCeEEeec
Q 007038 72 IESCMVKDLVLMKQNNINAVRNS---HYPQH-----------------------PRWYELCDLFGLYMIDEA 117 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~---h~p~~-----------------------~~~~dlcDe~Gi~V~~E~ 117 (620)
..|...+-|..+|+||+|+|-+- -+|-+ .+|.|.|-++||.|+.+.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 57888999999999999999882 11111 279999999999999765
No 60
>PLN02814 beta-glucosidase
Probab=46.57 E-value=39 Score=38.22 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=45.0
Q ss_pred CCcEEEeccCCccCC-C-C-c-----cHHHHH----HHHHhcCCeeeeeeecccccceeeeeCCCcEEEe--ecCCCCCC
Q 007038 226 TRPLILCEYSHAMGN-S-N-G-----NIHEYW----EAIDSTFGLQGGFIWDWVDQGLLRELADGTKHWA--YGGDFGDT 291 (620)
Q Consensus 226 ~kP~i~~Eygh~~gn-s-~-g-----~~~~y~----~~~~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~--yggd~~~~ 291 (620)
..|++++|-|.+.-. + . . .++++. +++..-=.+.|-|.|.+.|.-. |. |.--||-.
T Consensus 387 ~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfE----------W~~Gy~~RfGLv 456 (504)
T PLN02814 387 NPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYE----------LLGGYTTSFGMY 456 (504)
T ss_pred CCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhc----------hhccccCccceE
Confidence 348999999865321 1 1 0 123333 4444434589999999999321 21 11112211
Q ss_pred CCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 292 PNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 292 ~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
--| |... +..|+||++++-+|++..-
T Consensus 457 yVD--~~~~---~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 457 YVN--FSDP---GRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred EEC--CCCC---CcceeeecHHHHHHHHHhc
Confidence 001 1100 2268899999999999753
No 61
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=45.20 E-value=80 Score=35.45 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=46.8
Q ss_pred CCcEEEeccCCccCC---CCcc---------HHHHH----HHH-HhcCCeeeeeeecccccceeeeeCCCcEEEeec---
Q 007038 226 TRPLILCEYSHAMGN---SNGN---------IHEYW----EAI-DSTFGLQGGFIWDWVDQGLLRELADGTKHWAYG--- 285 (620)
Q Consensus 226 ~kP~i~~Eygh~~gn---s~g~---------~~~y~----~~~-~~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yg--- 285 (620)
++|++++|-|-+.-. ..|. ++++. +++ ..-=.+.|-|.|.++|--. |..|
T Consensus 367 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~E----------w~~G~y~ 436 (476)
T PRK09589 367 QLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVS----------AGTGEMK 436 (476)
T ss_pred CCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccccc----------ccCCccc
Confidence 579999999865311 1121 23333 344 3334589999999999321 2111
Q ss_pred CCCCCCCCCcccccCceecCCCCCcccHHHHHHhcc
Q 007038 286 GDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (620)
Q Consensus 286 gd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~ 321 (620)
--||-.-- +|...|+=+..|+||++++-+|++.+
T Consensus 437 ~RfGlv~V--D~~~~~~~t~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 437 KRYGFIYV--DKDNEGKGTLERSRKKSFYWYRDVIA 470 (476)
T ss_pred cceeeEEE--cCCCCCCcccccccccHHHHHHHHHH
Confidence 11221100 11112333446889999999999874
No 62
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=44.47 E-value=1.9e+02 Score=29.26 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=49.3
Q ss_pred cCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCc
Q 007038 94 SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP 173 (620)
Q Consensus 94 ~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~ 173 (620)
.+.|-=++++++|.+.++.+..|.-...+ ..+ ....+.+.+.++++++.-.+.+++||..
T Consensus 111 ~~IPtL~evl~~~~~~~~~l~iEiK~~~~------------~~~-~~~~~~~~v~~~l~~~~~~~~~v~~s~~------- 170 (252)
T cd08574 111 QSIPSLAELLRLAKKHNKSVIFDLRRPPP------------NHP-YYQSYVNITLDTILASGIPQHQVFWLPD------- 170 (252)
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEecCCcc------------cCc-cHHHHHHHHHHHHHHcCCCcccEEEccH-------
Confidence 34566678999999888888777632110 001 1123456677888877665667888732
Q ss_pred cHHHHHHHHHHhCCCCeEec
Q 007038 174 NHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 174 ~~~~~~~~ik~~DptRpv~~ 193 (620)
.. .+.+|+++|..++.+
T Consensus 171 --~~-~~~~~~~~p~~~~~~ 187 (252)
T cd08574 171 --EY-RALVRKVAPGFQQVS 187 (252)
T ss_pred --HH-HHHHHHHCCCCeEee
Confidence 12 478899999877654
No 63
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=43.12 E-value=18 Score=30.83 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.6
Q ss_pred eCCCCeEEEEEEEEeEE
Q 007038 21 HASGPVVDCESCLVGIR 37 (620)
Q Consensus 21 ~~~g~~~d~~~~~~GfR 37 (620)
..+|+++|+.+.+||||
T Consensus 94 ~~~g~~~d~~~~~~GfR 110 (110)
T PF00703_consen 94 DDDGEVLDSIETRFGFR 110 (110)
T ss_dssp EETTEEEEEEEEEEEB-
T ss_pred EeCCEEEEEEEeEeeEC
Confidence 46888999999999999
No 64
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=42.23 E-value=27 Score=35.68 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCcEEEccC---CC--Ch--------------------hHHHHHHhhcCCeEEeeccc
Q 007038 74 SCMVKDLVLMKQNNINAVRNSH---YP--QH--------------------PRWYELCDLFGLYMIDEANI 119 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h---~p--~~--------------------~~~~dlcDe~Gi~V~~E~~~ 119 (620)
.-+...|..+|++|||+|-++- .| .. .++.+.|.+.||.|+.++.+
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 3466779999999999999831 11 00 26889999999999998854
No 65
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=41.96 E-value=1.1e+02 Score=34.13 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=56.7
Q ss_pred EEEeEEEEEEECC-EEE--------------------ECCEEEE--EEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 007038 32 CLVGIRQVSKAPK-QLL--------------------VNGNPVV--IRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNI 88 (620)
Q Consensus 32 ~~~GfR~iei~~~-~f~--------------------lNGkpi~--lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~ 88 (620)
.+.||+.||+-++ .|- +.+.++. +||.|.-.+ ...+.+.+++|++...++|+
T Consensus 36 d~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~-----~~~pddvv~~~v~~A~~~Gv 110 (448)
T PRK12331 36 DNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGY-----RNYADDVVESFVQKSVENGI 110 (448)
T ss_pred HHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEecccccccc-----ccCchhhHHHHHHHHHHCCC
Confidence 3569999999643 121 2345554 777775332 23677889999999999999
Q ss_pred cEEEccCCC----ChhHHHHHHhhcCCeEEee
Q 007038 89 NAVRNSHYP----QHPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 89 NavR~~h~p----~~~~~~dlcDe~Gi~V~~E 116 (620)
..||+.... +-....+++.+.|+.|...
T Consensus 111 d~irif~~lnd~~n~~~~v~~ak~~G~~v~~~ 142 (448)
T PRK12331 111 DIIRIFDALNDVRNLETAVKATKKAGGHAQVA 142 (448)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHcCCeEEEE
Confidence 999995433 4456889999999887443
No 66
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=41.28 E-value=98 Score=31.23 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCcceecCC-C-CcHHHHHHHHh----CCCCCCcEEEeccCCccCCCCcc-------HHHHHHHHHhcCCeeeeeeec
Q 007038 201 PSTDIVCPM-Y-MRVWDIVMIAK----DPTETRPLILCEYSHAMGNSNGN-------IHEYWEAIDSTFGLQGGFIWD 265 (620)
Q Consensus 201 ~~~Di~~~~-Y-~~~~~~~~~~~----~~~~~kP~i~~Eygh~~gns~g~-------~~~y~~~~~~~~~~~G~fiW~ 265 (620)
...|+++.| | ...+.+..++. .. .||+.+||||-.-+.+.+. +.+....+++.+.+.+-+.+.
T Consensus 136 ~~~D~iavH~Y~~~~~~~~~~i~~~~~~~--~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~~~~VeryawF~ 211 (239)
T PF11790_consen 136 CRVDFIAVHWYGGDADDFKDYIDDLHNRY--GKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDSQPYVERYAWFG 211 (239)
T ss_pred CCccEEEEecCCcCHHHHHHHHHHHHHHh--CCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEecc
Confidence 468999886 6 34444444443 33 5999999998332222222 233344556667776654433
No 67
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.99 E-value=2e+02 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEcc------------CCCC-------------h--hHHHHHHhhcCCeEEeeccccccC
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNS------------HYPQ-------------H--PRWYELCDLFGLYMIDEANIETHG 123 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~------------h~p~-------------~--~~~~dlcDe~Gi~V~~E~~~~~hg 123 (620)
++.+.+++-|+.|....+|.+=.+ .+|. + .++.+.|.+.||-|+.|++...|.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 789999999999999999987653 1221 1 268899999999999999887664
No 68
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=39.57 E-value=90 Score=35.08 Aligned_cols=87 Identities=20% Similarity=0.244 Sum_probs=46.4
Q ss_pred CCcEEEeccCCccCC---CCcc---------HHHHH----HHHH-hcCCeeeeeeecccccceeeeeCCCcEEEeecCCC
Q 007038 226 TRPLILCEYSHAMGN---SNGN---------IHEYW----EAID-STFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDF 288 (620)
Q Consensus 226 ~kP~i~~Eygh~~gn---s~g~---------~~~y~----~~~~-~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~ 288 (620)
++|++++|-|.+.-. ..|. +.++. +++. .-=.+.|-|.|.++|-=... .|. |.--|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~---~G~----y~~Rf 440 (477)
T PRK15014 368 QKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFT---TGQ----YSKRY 440 (477)
T ss_pred CCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhccc---CCC----ccCcc
Confidence 579999999866421 1121 23333 3442 33458999999999932110 010 11112
Q ss_pred CCCCCCcccccCceecCCCCCcccHHHHHHhcc
Q 007038 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (620)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~ 321 (620)
|-.-- +|...+.=+..|+||++++-+|++.+
T Consensus 441 Gl~~V--D~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 441 GFIYV--NKHDDGTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred ceEEE--CCCCCCCcccceecccHHHHHHHHHH
Confidence 11100 11111222346889999999999875
No 69
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=39.27 E-value=1.6e+02 Score=30.04 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCCC------h----------hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCH
Q 007038 74 SCMVKDLVLMKQNNINAVRNSHYPQ------H----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h~p~------~----------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~ 137 (620)
+.+++-|++++++|+..|++..+.. . .++.++|.++|+.+..|. |... . ..++
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~----~~~~----~---~~~~ 167 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI----MDTP----F---MNSI 167 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee----cCCc----c---cCCH
Confidence 4577888999999999999864431 1 246788889999998886 2211 0 1222
Q ss_pred HHHHHHHHHHHHHHHHhCCCceE-EEEecCCCCCCCccHHHHHHHHHHhCCCCeEec
Q 007038 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 138 ~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (620)
+.+.+++++ -+||.+ +.+.++|=...+... .+.++.+- .|.++.
T Consensus 168 -------~~~~~ll~~-v~~~~lgl~~D~~h~~~~~~~~---~~~i~~~~-~~i~~v 212 (283)
T PRK13209 168 -------SKALGYAHY-LNSPWFQLYPDIGNLSAWDNDV---QMELQAGI-GHIVAF 212 (283)
T ss_pred -------HHHHHHHHH-hCCCccceEeccchHHHhcCCH---HHHHHhCc-CcEEEE
Confidence 133444544 377888 778888755443332 23444332 465554
No 70
>smart00642 Aamy Alpha-amylase domain.
Probab=38.30 E-value=72 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHcCCcEEEccC---CCC----------------h---------hHHHHHHhhcCCeEEeeccc
Q 007038 72 IESCMVKDLVLMKQNNINAVRNSH---YPQ----------------H---------PRWYELCDLFGLYMIDEANI 119 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~h---~p~----------------~---------~~~~dlcDe~Gi~V~~E~~~ 119 (620)
+-+.+...|..+|++|+|+|-++- .+. + ..+.+.|.+.||.|+.++.+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 456778888999999999997621 010 0 25788888999999988854
No 71
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.02 E-value=1.8e+02 Score=30.07 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=47.2
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCC-----CC---------hhHHHHHHhhcCCeEE
Q 007038 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY-----PQ---------HPRWYELCDLFGLYMI 114 (620)
Q Consensus 49 NGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~-----p~---------~~~~~dlcDe~Gi~V~ 114 (620)
+|+.+.|-|-|-- -+++.+.+-.+.+|++|+..+|.+-+ |. ...+-++|.++||.+.
T Consensus 25 ~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~ 95 (266)
T PRK13398 25 GEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVV 95 (266)
T ss_pred CCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEE
Confidence 3455778888853 36889999999999999999999633 11 1357789999999999
Q ss_pred eecc
Q 007038 115 DEAN 118 (620)
Q Consensus 115 ~E~~ 118 (620)
.|..
T Consensus 96 te~~ 99 (266)
T PRK13398 96 TEVM 99 (266)
T ss_pred EeeC
Confidence 9873
No 72
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.96 E-value=32 Score=25.77 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.3
Q ss_pred EEEEEecCceEEEEEEEe
Q 007038 424 IDYTIYGSGNVIVECNFK 441 (620)
Q Consensus 424 ~~Y~i~~~G~i~v~~~~~ 441 (620)
+.++|++||.|.+++..-
T Consensus 1 I~~~I~~dG~V~~~v~G~ 18 (48)
T PF11211_consen 1 IEFTIYPDGRVEEEVEGF 18 (48)
T ss_pred CEEEECCCcEEEEEEEec
Confidence 368999999999999764
No 73
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=36.47 E-value=1e+02 Score=34.70 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=47.0
Q ss_pred CCcEEEeccCCccCC---CCc---------cHHHHH----HHHH-hcCCeeeeeeecccccceeeeeCCCcEEEeecCCC
Q 007038 226 TRPLILCEYSHAMGN---SNG---------NIHEYW----EAID-STFGLQGGFIWDWVDQGLLRELADGTKHWAYGGDF 288 (620)
Q Consensus 226 ~kP~i~~Eygh~~gn---s~g---------~~~~y~----~~~~-~~~~~~G~fiW~~~D~~~~~~~~~g~~~~~yggd~ 288 (620)
+.|++++|-|-+.-. ..| .+.++. +++. .-=.+.|-|.|.++|--... .|. |.--|
T Consensus 368 ~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~---~G~----y~~Rf 440 (478)
T PRK09593 368 QKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAG---TGE----MKKRY 440 (478)
T ss_pred CCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhccc---CCC----ccCee
Confidence 469999999865321 111 123333 3442 33458999999999932110 010 11112
Q ss_pred CCCCCCcccccCceecCCCCCcccHHHHHHhcc
Q 007038 289 GDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQ 321 (620)
Q Consensus 289 ~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~ 321 (620)
|-.. .+|...++=+..|+||++++-+|++.+
T Consensus 441 Gl~~--VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 441 GFIY--VDRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred ceEE--ECCCCCCCcccceecccHHHHHHHHHH
Confidence 2110 012222333446889999999999874
No 74
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=36.38 E-value=93 Score=29.72 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEEEEeCCCCeEEEEEEEEeEEEEEEECCEEEECCEEEEEEee
Q 007038 7 AEQPNLYTLVVILKHASGPVVDCESCLVGIRQVSKAPKQLLVNGNPVVIRGV 58 (620)
Q Consensus 7 ~e~P~LY~l~~~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGv 58 (620)
+++|+.+++.++|.. ++... .-...+|=.++++ |..+.|.|..+.++|.
T Consensus 114 ~~dP~~~d~~~tl~g-~~~~t-~~g~vlgg~~vki-G~~~~le~~~y~~~gt 162 (168)
T PF14221_consen 114 APDPYYKDVRFTLEG-QAQIT-DDGVVLGGQKVKI-GTPVELEGGNYNFNGT 162 (168)
T ss_pred ccCCCceEEEEEEEE-EEEEc-CCeEEECCEEEec-cceEEEECceEEEEEE
Confidence 589999999999963 22221 1122344333322 4445555555555544
No 75
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.07 E-value=77 Score=32.38 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCCCh--------------hHHHHHHhhcCCeEEeec
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMIDEA 117 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p~~--------------~~~~dlcDe~Gi~V~~E~ 117 (620)
-++|++.+-.+.+|++|++.+|-+-|-|- +.+.+.|+++||.++.|.
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 47899999999999999999988544321 368899999999999987
No 76
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=35.34 E-value=1.1e+02 Score=34.49 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=51.6
Q ss_pred HHHHHHhCCCCCCcEEEeccCCccCCCC--------c------cHHHHH----HHHH-hcCCeeeeeeecccccceeeee
Q 007038 215 DIVMIAKDPTETRPLILCEYSHAMGNSN--------G------NIHEYW----EAID-STFGLQGGFIWDWVDQGLLREL 275 (620)
Q Consensus 215 ~~~~~~~~~~~~kP~i~~Eygh~~gns~--------g------~~~~y~----~~~~-~~~~~~G~fiW~~~D~~~~~~~ 275 (620)
.+-+|++....+.|++++|-|....+.. . .++.|. +++. .-=.+.|-|+|.+.|--
T Consensus 396 ~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnf----- 470 (524)
T KOG0626|consen 396 KLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNF----- 470 (524)
T ss_pred HHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccch-----
Confidence 3556676655688999999985432110 0 112233 4444 23468899999999921
Q ss_pred CCCcEEEeec--CCCCCCCCCcccccCceecCCCCCcccHHHHHHhccc
Q 007038 276 ADGTKHWAYG--GDFGDTPNDLNFCLNGLLWPDRTPHPALHEVKYVYQA 322 (620)
Q Consensus 276 ~~g~~~~~yg--gd~~~~~~d~~f~~~Glv~~dR~pk~~~~e~k~~~~~ 322 (620)
-|..| --||- .-.+|. |+ ..|.||.++.-+++....
T Consensus 471 -----Ew~~Gy~~RFGl--yyVDf~-d~---l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 471 -----EWLDGYKVRFGL--YYVDFK-DP---LKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred -----hhhcCccccccc--EEEeCC-CC---CcCCchhHHHHHHHHHcC
Confidence 11111 11111 001111 23 389999999999877654
No 77
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=35.25 E-value=3.3e+02 Score=26.91 Aligned_cols=129 Identities=12% Similarity=0.160 Sum_probs=70.7
Q ss_pred EEeEEEEEEECCEEEECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-----cCCCChhHHHHHHh
Q 007038 33 LVGIRQVSKAPKQLLVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-----SHYPQHPRWYELCD 107 (620)
Q Consensus 33 ~~GfR~iei~~~~f~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~-----~h~p~~~~~~dlcD 107 (620)
..|++-||+ +=++.-+|++|.++-.+.- ..+|. +...-.-.+..+|++.+..-+. ...|--+++++++.
T Consensus 24 ~~G~~~vE~-Dv~lTkDg~~Vv~HD~~l~---r~t~~--~~~i~~~t~~el~~l~~~~~~~~~~~~~~iptL~evl~~~~ 97 (233)
T cd08582 24 EQGADGIET-DVRLTKDGELVCVHDPTLK---RTSGG--DGAVSDLTLAELRKLDIGSWKGESYKGEKVPTLEEYLAIVP 97 (233)
T ss_pred HcCCCEEEE-EEEEccCCCEEEecCCccc---cccCC--CcchhhCCHHHHhcCCCCcccCCCCCCCcCCCHHHHHHHHH
Confidence 457777877 3345557777655433321 11111 1111222233455555543322 22345568999999
Q ss_pred hcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhC-CCceEEEEecCCCCCCCccHHHHHHHHHHhC
Q 007038 108 LFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK-NHASIICWSLGNEAGHGPNHSAAAGWIRGKD 186 (620)
Q Consensus 108 e~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r-NHPSIi~WslgNE~~~g~~~~~~~~~ik~~D 186 (620)
++++.+..|.-.. ... ..+.+.+.++++++. ....|++.|.. ......+|+++
T Consensus 98 ~~~~~l~ieiK~~-------------~~~----~~~~~~~~~~~~~~~~~~~~v~~~Sf~---------~~~l~~~~~~~ 151 (233)
T cd08582 98 KYGKKLFIEIKHP-------------RRG----PEAEEELLKLLKESGLLPEQIVIISFD---------AEALKRVRELA 151 (233)
T ss_pred hcCceEEEEeCCC-------------ccC----ccHHHHHHHHHHHcCCCCCCEEEEecC---------HHHHHHHHHHC
Confidence 9898888886321 011 134556777777774 33456665521 34567788999
Q ss_pred CCCeEec
Q 007038 187 PSRLLHY 193 (620)
Q Consensus 187 ptRpv~~ 193 (620)
|+-++.+
T Consensus 152 p~~~~~~ 158 (233)
T cd08582 152 PTLETLW 158 (233)
T ss_pred CCCcEEE
Confidence 9865554
No 78
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.13 E-value=1.8e+02 Score=27.58 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCC-----CCh-------------hHHHHHHhhcCCeEEeeccccccCcccccCCCCCC
Q 007038 73 ESCMVKDLVLMKQNNINAVRNSHY-----PQH-------------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPT 134 (620)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NavR~~h~-----p~~-------------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~ 134 (620)
.+.+++-+++++.+|+..|+++-. +.. ..+.+.|+++|+.+..|.. ....... .
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~----~~~~~~~----~ 141 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH----PGPFSET----P 141 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S----SSSSSSE----E
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc----cCccccc----h
Confidence 678999999999999999999633 111 2578889999999988852 2110000 0
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCccHHHHHHHHH
Q 007038 135 MEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNHSAAAGWIR 183 (620)
Q Consensus 135 ~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~~~~~~~ik 183 (620)
.+ .+++.++++....--.=+.|.++|-...+.+...+.+.++
T Consensus 142 ~~-------~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~ 183 (213)
T PF01261_consen 142 FS-------VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLA 183 (213)
T ss_dssp SS-------HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHH
T ss_pred hh-------HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhh
Confidence 11 3455666665443336677888777666555544444443
No 79
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=34.18 E-value=6.4e+02 Score=27.40 Aligned_cols=192 Identities=14% Similarity=0.026 Sum_probs=99.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---CCC--h--------hHHHHHHhhcCCeEEeec-cccccC-ccccc
Q 007038 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ--H--------PRWYELCDLFGLYMIDEA-NIETHG-FYFSE 128 (620)
Q Consensus 64 ~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h---~p~--~--------~~~~dlcDe~Gi~V~~E~-~~~~hg-~~~~~ 128 (620)
+|..+.+.+......-++.++++|+.+|=++. +|. + .++-++++++||-|..-. +...|. +. .+
T Consensus 22 ~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-~g 100 (382)
T TIGR02631 22 DPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFK-DG 100 (382)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcccc-CC
Confidence 45544546666778889999999999997752 331 1 368889999999876432 222221 11 11
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH--HhCCCceEEEEecC--CCCCCCc-----------cHHHHHHHHHHhCCCCeEec
Q 007038 129 HLKHPTMEPSWAAAMMDRVIGMVE--RDKNHASIICWSLG--NEAGHGP-----------NHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~mV~--r~rNHPSIi~Wslg--NE~~~g~-----------~~~~~~~~ik~~DptRpv~~ 193 (620)
. ..+.++..++...+.+++.|+ +--+-+.|++|+-. -+..... .+..+++++++....=.+..
T Consensus 101 ~--las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laL 178 (382)
T TIGR02631 101 G--FTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFAL 178 (382)
T ss_pred C--CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 1 224467666666666555552 23366789999742 1211111 13344444444322222344
Q ss_pred CCCCCCCCCcceecCCCCcHHHHHHHHhCCCCCCc---EEEeccCCccCCCCccHHHHHHHHHhcCCeeeeeeecccc
Q 007038 194 EGGGSRTPSTDIVCPMYMRVWDIVMIAKDPTETRP---LILCEYSHAMGNSNGNIHEYWEAIDSTFGLQGGFIWDWVD 268 (620)
Q Consensus 194 ~~~~~~~~~~Di~~~~Y~~~~~~~~~~~~~~~~kP---~i~~Eygh~~gns~g~~~~y~~~~~~~~~~~G~fiW~~~D 268 (620)
|.-. ..+....+..+......+++.- +.| -++-+.+|..-. ..++..+.......+.+... .+.|
T Consensus 179 Ep~p----~~~~~~~ll~T~~~al~li~~v--~~pn~vgl~lDvgH~~~~-g~n~~~~i~~~l~~~kl~Hv---hlnD 246 (382)
T TIGR02631 179 EPKP----NEPRGDILLPTVGHALAFIETL--ERPELFGLNPETGHEQMA-GLNFTHGIAQALWAGKLFHI---DLNG 246 (382)
T ss_pred ccCC----CCCCcceecCCHHHHHHHHHHc--CCccceeEEEechhHhhc-CCCHHHHHHHHHhCCCEEEE---ecCC
Confidence 4321 1111122345566655555543 223 255699997321 13565555543334555432 4555
No 80
>PF14100 PmoA: Methane oxygenase PmoA
Probab=34.13 E-value=5.4e+02 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=32.7
Q ss_pred EEEEEccccccCCCCCCCCCCCCCCccccCc-cEEEEEEEEeccCCCCchhhhh
Q 007038 563 IEVHLDHKHMGLGGDDSWTPCVHDKYLVPAV-AYSFSIRLSPLTAATSGYGIYK 615 (620)
Q Consensus 563 ~~l~iD~~q~GvGg~~ScGp~~~~~Y~l~~~-~~~~~f~i~p~~~~~~~~~~~~ 615 (620)
-.++ ++-..+++= + +....++.|+++ .++++|++...+...+.+++++
T Consensus 218 W~vR-~~g~~~~~p---~-~~~~~~~~l~~G~~l~~rYr~~v~dG~~~~~~~~~ 266 (271)
T PF14100_consen 218 WHVR-GYGLFGANP---A-PAFDGPLTLPPGETLTLRYRVVVHDGALDAEEAEA 266 (271)
T ss_pred eEEe-ccCcceecc---c-ccccCceecCCCCeEEEEEEEEEeCCCCCHHHHHH
Confidence 3344 555555531 1 222678888885 5999999999888778877765
No 81
>PLN02784 alpha-amylase
Probab=33.83 E-value=1.5e+02 Score=35.80 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=50.1
Q ss_pred EECCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---------CCCh---------------hHH
Q 007038 47 LVNGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---------YPQH---------------PRW 102 (620)
Q Consensus 47 ~lNGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h---------~p~~---------------~~~ 102 (620)
.-+|..+.++|.++.- |.-|. -...+...+..++++|||+|=+.- |.+. ..+
T Consensus 498 ~~~~~eVmlQgF~Wds--~~dg~--w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 498 TGSGFEILCQGFNWES--HKSGR--WYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDL 573 (894)
T ss_pred ccCCceEEEEeEEcCc--CCCCc--hHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHH
Confidence 4468899999999842 22221 256778889999999999997621 1111 257
Q ss_pred HHHHhhcCCeEEeeccc
Q 007038 103 YELCDLFGLYMIDEANI 119 (620)
Q Consensus 103 ~dlcDe~Gi~V~~E~~~ 119 (620)
.+.|.+.||.|+.++-+
T Consensus 574 I~a~H~~GIkVIlDiVi 590 (894)
T PLN02784 574 VKSFHEVGIKVLGDAVL 590 (894)
T ss_pred HHHHHHCCCEEEEEECc
Confidence 89999999999998854
No 82
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=33.76 E-value=2.1e+02 Score=29.73 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=35.5
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEE------E------c---cCCCChhHHHHHHhhcCCeEE
Q 007038 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAV------R------N---SHYPQHPRWYELCDLFGLYMI 114 (620)
Q Consensus 50 Gkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~Nav------R------~---~h~p~~~~~~dlcDe~Gi~V~ 114 (620)
|++++..|--.|. ..-++.+++.|+..| + + +|.. +|..++.+.+.|+-|+
T Consensus 31 ~~~vy~lG~iVHN--------------~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv-~~~~~~~~~~~g~~vi 95 (281)
T PRK12360 31 GKKIYTLGPLIHN--------------NQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGV-SKKVYKDLKDKGLEII 95 (281)
T ss_pred CCCeEEecCCcCC--------------HHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCC-CHHHHHHHHHCCCeEE
Confidence 7888888877762 334566677788777 1 1 3443 3577888888999888
Q ss_pred ee
Q 007038 115 DE 116 (620)
Q Consensus 115 ~E 116 (620)
|-
T Consensus 96 Da 97 (281)
T PRK12360 96 DA 97 (281)
T ss_pred eC
Confidence 64
No 83
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=32.85 E-value=2.7e+02 Score=28.33 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCcEEEccCC--CChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHh
Q 007038 77 VKDLVLMKQNNINAVRNSHY--PQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERD 154 (620)
Q Consensus 77 ~~Dl~lmK~~g~NavR~~h~--p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~ 154 (620)
.++++.+.++|++-|=+.-. -+++.+.++|.++|=-++...+.- -|.. .-.-|++.-.-.+.++++++
T Consensus 87 ~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r-~g~v---------av~GW~e~s~~~~~~l~~~~ 156 (241)
T COG0106 87 LEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDAR-DGKV---------AVSGWQEDSGVELEELAKRL 156 (241)
T ss_pred HHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEcc-CCcc---------ccccccccccCCHHHHHHHH
Confidence 56777888899998877433 366788999999996666444221 0110 11124433333456666666
Q ss_pred CCCc--eEEEEecCCCCC-CCccHHHHHHHHHHhCCCCeEecCCCC
Q 007038 155 KNHA--SIICWSLGNEAG-HGPNHSAAAGWIRGKDPSRLLHYEGGG 197 (620)
Q Consensus 155 rNHP--SIi~WslgNE~~-~g~~~~~~~~~ik~~DptRpv~~~~~~ 197 (620)
.+.+ +|++=.+..|-. .|+|++.+.+.++.. +.||.++++-
T Consensus 157 ~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv 200 (241)
T COG0106 157 EEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGV 200 (241)
T ss_pred HhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCc
Confidence 6654 588888888875 478988888888888 6899987763
No 84
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=32.69 E-value=1.8e+02 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=46.1
Q ss_pred CCEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh--------------hHHHHHHhhcCCeEE
Q 007038 49 NGNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH--------------PRWYELCDLFGLYMI 114 (620)
Q Consensus 49 NGkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~~--------------~~~~dlcDe~Gi~V~ 114 (620)
+|++++|-|-|- .-+.+.+.+..+.+|+.|+..+|-+-+-+. ..+.+.|++.||.++
T Consensus 116 ~~~~~~iaGpc~---------iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~ 186 (360)
T PRK12595 116 DGNQSFIFGPCS---------VESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVI 186 (360)
T ss_pred CCCeeeEEeccc---------ccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEE
Confidence 466777777653 346899999999999999999998433221 267889999999999
Q ss_pred eec
Q 007038 115 DEA 117 (620)
Q Consensus 115 ~E~ 117 (620)
.+.
T Consensus 187 t~v 189 (360)
T PRK12595 187 SEI 189 (360)
T ss_pred Eee
Confidence 886
No 85
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.50 E-value=1.9e+02 Score=28.37 Aligned_cols=87 Identities=18% Similarity=0.137 Sum_probs=50.2
Q ss_pred EEEEEEeEEEEEEECCEEEEC-----CEEEEEEeeecCCCCCCC--------CCCCCHHHHHHHHHHHHHcC-CcEEEc-
Q 007038 29 CESCLVGIRQVSKAPKQLLVN-----GNPVVIRGVNRHEHHPRV--------GKTNIESCMVKDLVLMKQNN-INAVRN- 93 (620)
Q Consensus 29 ~~~~~~GfR~iei~~~~f~lN-----Gkpi~lrGvn~h~~~p~~--------G~~~~~e~~~~Dl~lmK~~g-~NavR~- 93 (620)
++-..||.|.++|+++++.|| |++. +|.+.+-.+.... ++.-+-..+...|.-||+++ =|++=+
T Consensus 38 TiGvefg~r~~~id~k~IKlqiwDtaGqe~-frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImL 116 (216)
T KOG0098|consen 38 TIGVEFGARMVTIDGKQIKLQIWDTAGQES-FRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIML 116 (216)
T ss_pred eeeeeeceeEEEEcCceEEEEEEecCCcHH-HHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEE
Confidence 456788999998887777654 3332 1222221122222 23335567777888888874 666644
Q ss_pred -cCC--------CChhHHHHHHhhcCCeEEeec
Q 007038 94 -SHY--------PQHPRWYELCDLFGLYMIDEA 117 (620)
Q Consensus 94 -~h~--------p~~~~~~dlcDe~Gi~V~~E~ 117 (620)
.+. ...++==.+|.+.||.-+ |.
T Consensus 117 iGNKsDL~~rR~Vs~EEGeaFA~ehgLifm-ET 148 (216)
T KOG0098|consen 117 IGNKSDLEARREVSKEEGEAFAREHGLIFM-ET 148 (216)
T ss_pred EcchhhhhccccccHHHHHHHHHHcCceee-hh
Confidence 221 123455677888998877 44
No 86
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=32.07 E-value=1.2e+02 Score=23.58 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCcEEEcc-C--CCChhHHHHHHhhcCCeEEee
Q 007038 76 MVKDLVLMKQNNINAVRNS-H--YPQHPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 76 ~~~Dl~lmK~~g~NavR~~-h--~p~~~~~~dlcDe~Gi~V~~E 116 (620)
.+.-++.+|+.|+++|=++ | ....+.++++|.++||.|+.-
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEE
Confidence 4456889999999999874 2 234578999999999999854
No 87
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=31.61 E-value=2.1e+02 Score=33.11 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=46.2
Q ss_pred EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCC----hhHHHHHHhhcCCeEEee
Q 007038 53 VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQ----HPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 53 i~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~----~~~~~dlcDe~Gi~V~~E 116 (620)
..+||.|.-.+ ...+++.++..++++++.|+-.+|+....+ -....+.+.+.|..+...
T Consensus 80 mL~Rg~N~vGy-----~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 80 MLLRGQNLLGY-----RNYADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred EEecccccccc-----ccCChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEE
Confidence 55889886333 237889999999999999999999965444 356789999999977654
No 88
>PRK14565 triosephosphate isomerase; Provisional
Probab=31.37 E-value=4.8e+02 Score=26.46 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=62.3
Q ss_pred HHHHHHcCCcEEEccCCC------ChhHHH----HHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHH
Q 007038 80 LVLMKQNNINAVRNSHYP------QHPRWY----ELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIG 149 (620)
Q Consensus 80 l~lmK~~g~NavR~~h~p------~~~~~~----dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (620)
..++|++|++.+=+.|.- ...+.. ..|-+.||.++.+..-.. . . .......+...++++.
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~---e---~----r~~~~~~~~~~~Ql~~ 147 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETL---E---D----RENGMTKDVLLEQCSN 147 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCH---H---H----HHccChHHHHHHHHHH
Confidence 357899999999886643 233444 789999999998763100 0 0 0111123333445554
Q ss_pred HHHHhCCCceEEE----EecCCCCCC-CccHHHHHHHHHHhCCCCeEecCCC
Q 007038 150 MVERDKNHASIIC----WSLGNEAGH-GPNHSAAAGWIRGKDPSRLLHYEGG 196 (620)
Q Consensus 150 mV~r~rNHPSIi~----WslgNE~~~-g~~~~~~~~~ik~~DptRpv~~~~~ 196 (620)
.+... .|-||+ |.+|.-... ....+++.+.||+.+++-+|.|.+.
T Consensus 148 ~l~~~--~~ivIAYEPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~~IlYGGS 197 (237)
T PRK14565 148 CLPKH--GEFIIAYEPVWAIGGSTIPSNDAIAEAFEIIRSYDSKSHIIYGGS 197 (237)
T ss_pred HhcCC--CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHhCCCceEEEcCc
Confidence 44322 355563 777732222 2346788999999877667778664
No 89
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.27 E-value=1.2e+02 Score=31.87 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEcc--C------CC----------Ch--hHHHHHHhhcCCeEEeecccccc
Q 007038 68 GKTNIESCMVKDLVLMKQNNINAVRNS--H------YP----------QH--PRWYELCDLFGLYMIDEANIETH 122 (620)
Q Consensus 68 G~~~~~e~~~~Dl~lmK~~g~NavR~~--h------~p----------~~--~~~~dlcDe~Gi~V~~E~~~~~h 122 (620)
|+.++.+.+++-|+.|...++|.+=.+ + +| .. .++.+.|.+.||-|+.|.+...|
T Consensus 11 ~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH 85 (301)
T cd06565 11 NAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGH 85 (301)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHH
Confidence 356788999999999999999998762 1 11 00 26889999999999999876555
No 90
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=30.18 E-value=3.2e+02 Score=26.75 Aligned_cols=74 Identities=19% Similarity=0.109 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-ceEEEEecCCCCCCCc
Q 007038 95 HYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNH-ASIICWSLGNEAGHGP 173 (620)
Q Consensus 95 h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNH-PSIi~WslgNE~~~g~ 173 (620)
+.|--+++++++.+.++.+..|.-.. ... ...+.+.+.++++++... -.|++.|. |
T Consensus 85 ~iptl~evl~~~~~~~~~l~iEiK~~-------------~~~---~~~~~~~v~~~l~~~~~~~~~v~~~Sf-~------ 141 (229)
T cd08562 85 PIPTLADVLELARELGLGLNLEIKPD-------------PGD---EALTARVVAAALRELWPHASKLLLSSF-S------ 141 (229)
T ss_pred CCCCHHHHHHHHHhcCCEEEEEECCC-------------CCc---cHHHHHHHHHHHHHhcCCcCCEEEECC-C------
Confidence 34555789999988888888776321 111 223445677777777654 34555552 2
Q ss_pred cHHHHHHHHHHhCCCCeEec
Q 007038 174 NHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 174 ~~~~~~~~ik~~DptRpv~~ 193 (620)
..+...+|+++|.-++.+
T Consensus 142 --~~~l~~~~~~~p~~~~~~ 159 (229)
T cd08562 142 --LEALRAARRAAPELPLGL 159 (229)
T ss_pred --HHHHHHHHHhCCCCcEEE
Confidence 345577899999876654
No 91
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=30.05 E-value=3e+02 Score=27.80 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCCCC-----h-----------hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCC
Q 007038 73 ESCMVKDLVLMKQNNINAVRNSHYPQ-----H-----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME 136 (620)
Q Consensus 73 ~e~~~~Dl~lmK~~g~NavR~~h~p~-----~-----------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~ 136 (620)
.+.+++-+++++.+|+..|+++.... . .++.++|.++||.+..|. |+... ... ..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~----~~~~~-~~~---~~t 160 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP----LTPYE-SNV---VCN 160 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec----CCCCc-ccc---cCC
Confidence 35677788999999999999953211 1 357899999999998885 22100 000 122
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceE-EEEecCCCCCCCccHHHHHHHHHHhCCCCeEec
Q 007038 137 PSWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (620)
.+.+.++++. -+||.| +.+.++|-...+.. +.+.++++- .|..+.
T Consensus 161 -------~~~~~~l~~~-~~~~~v~~~~D~~h~~~~~~~---~~~~i~~~~-~rI~~v 206 (275)
T PRK09856 161 -------ANDVLHALAL-VPSPRLFSMVDICAPYVQAEP---VMSYFDKLG-DKLRHL 206 (275)
T ss_pred -------HHHHHHHHHH-cCCCcceeEEeecchhcCCCC---HHHHHHHhC-CcEEEE
Confidence 2234556654 467776 55778875544443 444455553 566554
No 92
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=29.90 E-value=95 Score=30.78 Aligned_cols=82 Identities=12% Similarity=-0.017 Sum_probs=47.7
Q ss_pred HHHHHHcCCcEEEccCC--CChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Q 007038 80 LVLMKQNNINAVRNSHY--PQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNH 157 (620)
Q Consensus 80 l~lmK~~g~NavR~~h~--p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNH 157 (620)
-++|+++|++.+.-+.. ...++..+.|.+.|+-|+.-+.....|-. -.+ ..+..+..+.+..-.++.-..+.++
T Consensus 6 ~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGyPVliKas~ggGG~g--m~i--v~~~~eL~~~~~~~~~~s~~~fg~~ 81 (211)
T PF02786_consen 6 RKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGYPVLIKASAGGGGRG--MRI--VHNEEELEEAFERAQRESPAAFGDG 81 (211)
T ss_dssp HHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-SSEEEEETTSSTTTS--EEE--ESSHHHHHHHHHHHHHHHHHHHSTS
T ss_pred HHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCCceEEeecccccccc--ccc--ccchhhhhhhhhhccccCccccccc
Confidence 35899999999999888 67889999999999999987754322211 011 1233344444333333333456666
Q ss_pred ceEEEEec
Q 007038 158 ASIICWSL 165 (620)
Q Consensus 158 PSIi~Wsl 165 (620)
|..+-=.+
T Consensus 82 ~v~iek~i 89 (211)
T PF02786_consen 82 PVLIEKFI 89 (211)
T ss_dssp -EEEEE--
T ss_pred eEEEeeeh
Confidence 66554333
No 93
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.76 E-value=2.1e+02 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=28.0
Q ss_pred HHHHHHcCCcEEEccCCC---C------hhHHHHHHhhcCCeEEee
Q 007038 80 LVLMKQNNINAVRNSHYP---Q------HPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 80 l~lmK~~g~NavR~~h~p---~------~~~~~dlcDe~Gi~V~~E 116 (620)
|+.++++|+..|=++... . ...+-++|+++||.|..-
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEE
Confidence 578999999998874322 1 247899999999997653
No 94
>PLN00196 alpha-amylase; Provisional
Probab=29.75 E-value=1.8e+02 Score=32.26 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=45.9
Q ss_pred EEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEcc---------CCC------C-h---------hHHHHHH
Q 007038 52 PVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNS---------HYP------Q-H---------PRWYELC 106 (620)
Q Consensus 52 pi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~---------h~p------~-~---------~~~~dlc 106 (620)
.+.+.|.+++.+ +..|. .-..+...|..+|++||++|=++ .|- - . ..+.+.|
T Consensus 25 ~v~~Q~F~W~~~-~~~gg--~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~a 101 (428)
T PLN00196 25 QVLFQGFNWESW-KQNGG--WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAF 101 (428)
T ss_pred CEEEEeeccCCC-CCCCc--CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHH
Confidence 478899998543 33332 35668888999999999999763 110 1 1 2567888
Q ss_pred hhcCCeEEeeccc
Q 007038 107 DLFGLYMIDEANI 119 (620)
Q Consensus 107 De~Gi~V~~E~~~ 119 (620)
.+.||.|+.++-+
T Consensus 102 H~~GIkVilDvV~ 114 (428)
T PLN00196 102 HGKGVQVIADIVI 114 (428)
T ss_pred HHCCCEEEEEECc
Confidence 8899999988744
No 95
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=29.32 E-value=69 Score=34.56 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEcc-CCCChh---------HHHHHHhhcCCeEEeecc
Q 007038 72 IESCMVKDLVLMKQNNINAVRNS-HYPQHP---------RWYELCDLFGLYMIDEAN 118 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~~-h~p~~~---------~~~dlcDe~Gi~V~~E~~ 118 (620)
+.+....-|+.|+++|+..|=|| |.|.++ ++.++|.++||.|+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 68889999999999999999886 666542 678999999999998874
No 96
>TIGR03356 BGL beta-galactosidase.
Probab=29.09 E-value=85 Score=34.69 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCcEEEc-cCCC
Q 007038 74 SCMVKDLVLMKQNNINAVRN-SHYP 97 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~-~h~p 97 (620)
+..++-|..+++.||.-|=| +|+-
T Consensus 94 ~~y~~~i~~l~~~gi~pivtL~Hfd 118 (427)
T TIGR03356 94 DFYDRLVDELLEAGIEPFVTLYHWD 118 (427)
T ss_pred HHHHHHHHHHHHcCCeeEEeeccCC
Confidence 56678889999999998766 5654
No 97
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=28.71 E-value=2.7e+02 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred CCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCccH
Q 007038 96 YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNH 175 (620)
Q Consensus 96 ~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~ 175 (620)
.|.=.+++++|.+ ++.+..|.-.. .. .+...+.+.++++++....-|+++|. |
T Consensus 48 i~tL~e~l~~~~~-~~~i~leiK~~-------------~~----~~~~~~~l~~~i~~~~~~~~v~i~s~-~-------- 100 (189)
T cd08556 48 IPTLEEVLELVKG-GVGLNIELKEP-------------TR----YPGLEAKVAELLREYGLEERVVVSSF-D-------- 100 (189)
T ss_pred CCCHHHHHHhccc-CcEEEEEECCC-------------CC----chhHHHHHHHHHHHcCCcCCEEEEeC-C--------
Confidence 4555788888888 88887776211 11 23456677788888876677777773 2
Q ss_pred HHHHHHHHHhCCCCeEec
Q 007038 176 SAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 176 ~~~~~~ik~~DptRpv~~ 193 (620)
..+...+|+.+|.-++.+
T Consensus 101 ~~~l~~~~~~~p~~~~~~ 118 (189)
T cd08556 101 HEALRALKELDPEVPTGL 118 (189)
T ss_pred HHHHHHHHHhCCCCcEEE
Confidence 256777899999866654
No 98
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.06 E-value=4.5e+02 Score=26.65 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEc----cCC-C-------ChhHHHHHHhhc-CCeEEeeccccccCcccccCCCCCCCC
Q 007038 70 TNIESCMVKDLVLMKQNNINAVRN----SHY-P-------QHPRWYELCDLF-GLYMIDEANIETHGFYFSEHLKHPTME 136 (620)
Q Consensus 70 ~~~~e~~~~Dl~lmK~~g~NavR~----~h~-p-------~~~~~~dlcDe~-Gi~V~~E~~~~~hg~~~~~~~~~~~~~ 136 (620)
+++ ..+.+-++++|++|+..|=+ .+. . .-..+.++++++ |+.+....+... .+ ...+
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~-------~~--~~~~ 76 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLI-------NL--ASPD 76 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCcee-------cc--CCCC
Confidence 344 67888999999999988744 111 1 123688999999 777665543210 11 1234
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCceEEEEecCC
Q 007038 137 PSWAAAMMDRVIGMVERD--KNHASIICWSLGN 167 (620)
Q Consensus 137 ~~~~~~~~~~~~~mV~r~--rNHPSIi~WslgN 167 (620)
++-++..+++++++++.- -.-+.|++|....
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~ 109 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSY 109 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 555666666666666443 2556777775443
No 99
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=27.87 E-value=4.4e+02 Score=26.75 Aligned_cols=97 Identities=11% Similarity=0.049 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCC---C---h----------hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCH
Q 007038 74 SCMVKDLVLMKQNNINAVRNSHYP---Q---H----------PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEP 137 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h~p---~---~----------~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~ 137 (620)
+.+++-+++++++|++.|++..+. . . .++.++|.++|+.+..|. |... + ..++
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~----~~~~----~---~~t~ 162 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI----MDTP----F---MSSI 162 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee----CCCc----h---hcCH
Confidence 457788899999999999996431 1 1 145788999999999885 2110 0 1111
Q ss_pred HHHHHHHHHHHHHHHHhCCCceE-EEEecCCCCCCCccHHHHHHHHHHhCCCCeEec
Q 007038 138 SWAAAMMDRVIGMVERDKNHASI-ICWSLGNEAGHGPNHSAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 138 ~~~~~~~~~~~~mV~r~rNHPSI-i~WslgNE~~~g~~~~~~~~~ik~~DptRpv~~ 193 (620)
.++.++++.. +||.| +.|.++|=...+.... +.++.. ..|.++.
T Consensus 163 -------~~~~~li~~v-~~~~v~~~~D~~h~~~~~~~~~---~~i~~~-~~~i~~v 207 (279)
T TIGR00542 163 -------SKWLKWDHYL-NSPWFTLYPDIGNLSAWDNDVQ---MELQLG-IDKIVAI 207 (279)
T ss_pred -------HHHHHHHHHc-CCCceEEEeCcChhhhccCCHH---HHHHHh-hhhEEEE
Confidence 2344555543 66765 5588888554444332 234433 2465554
No 100
>PRK01060 endonuclease IV; Provisional
Probab=27.67 E-value=5e+02 Score=26.32 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCcEEEcc----CCCCh--------hHHHHHHhhcCCe---EEeeccccccCcccccCCCCCCCCHHHH
Q 007038 76 MVKDLVLMKQNNINAVRNS----HYPQH--------PRWYELCDLFGLY---MIDEANIETHGFYFSEHLKHPTMEPSWA 140 (620)
Q Consensus 76 ~~~Dl~lmK~~g~NavR~~----h~p~~--------~~~~dlcDe~Gi~---V~~E~~~~~hg~~~~~~~~~~~~~~~~~ 140 (620)
+++-++.++++|+.+|=+. +.... ..+-++|+++||- +...++. . ++....+++.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~------~---~nl~~~d~~~r 84 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPY------L---INLGNPNKEIL 84 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecce------E---ecCCCCCHHHH
Confidence 7788999999999999663 22111 2478999999997 3332221 1 11124567777
Q ss_pred HHHHHHHHHHHHH--hCCCceEEEEec
Q 007038 141 AAMMDRVIGMVER--DKNHASIICWSL 165 (620)
Q Consensus 141 ~~~~~~~~~mV~r--~rNHPSIi~Wsl 165 (620)
+..++++++.++. .-.-+.|+++.-
T Consensus 85 ~~s~~~~~~~i~~A~~lga~~vv~h~G 111 (281)
T PRK01060 85 EKSRDFLIQEIERCAALGAKLLVFHPG 111 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 7777777777744 335566777643
No 101
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=27.56 E-value=1.1e+02 Score=32.11 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEcc------------CCCC---------------------hhHHHHHHhhcCCeEEee
Q 007038 70 TNIESCMVKDLVLMKQNNINAVRNS------------HYPQ---------------------HPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 70 ~~~~e~~~~Dl~lmK~~g~NavR~~------------h~p~---------------------~~~~~dlcDe~Gi~V~~E 116 (620)
.++.+.+++-|+.|...++|.+-.+ -+|. -.++.+.|.+.||-|+.|
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4789999999999999999998663 1121 026889999999999999
Q ss_pred ccccccC
Q 007038 117 ANIETHG 123 (620)
Q Consensus 117 ~~~~~hg 123 (620)
.+...|.
T Consensus 92 iD~PGH~ 98 (303)
T cd02742 92 IDMPGHS 98 (303)
T ss_pred ccchHHH
Confidence 9876653
No 102
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=27.12 E-value=3e+02 Score=28.93 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=33.5
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEc-------------cCCCChhHHHHHHhhcCCeEEee
Q 007038 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRN-------------SHYPQHPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 50 Gkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~-------------~h~p~~~~~~dlcDe~Gi~V~~E 116 (620)
|++++.-|--.|. ...++.|+++|+..|-. +|.. +|..++.+.+.|+-|+|-
T Consensus 30 ~~~iytlG~iIHN--------------~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv-~~~~~~~~~~~g~~viDa 94 (298)
T PRK01045 30 GAPIYVRHEIVHN--------------RYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGV-SPAVREEAKERGLTVIDA 94 (298)
T ss_pred CCCeEEEecCccC--------------HHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCC-CHHHHHHHHHCCCeEEeC
Confidence 5677877777662 23566777777755421 3432 346778888888888764
No 103
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=25.48 E-value=4.8e+02 Score=27.71 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEccC------------CC--------------------C--hhHHHHHHhhcCCeEEe
Q 007038 70 TNIESCMVKDLVLMKQNNINAVRNSH------------YP--------------------Q--HPRWYELCDLFGLYMID 115 (620)
Q Consensus 70 ~~~~e~~~~Dl~lmK~~g~NavR~~h------------~p--------------------~--~~~~~dlcDe~Gi~V~~ 115 (620)
.++.+.+++-|+.|....+|.+=.+- || . -.++.+.|.+.||-|+.
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 36899999999999999999976531 11 1 12678999999999999
Q ss_pred eccccccC
Q 007038 116 EANIETHG 123 (620)
Q Consensus 116 E~~~~~hg 123 (620)
|++...|.
T Consensus 94 EiD~PGH~ 101 (329)
T cd06568 94 EIDMPGHT 101 (329)
T ss_pred ecCCcHHH
Confidence 99876663
No 104
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=25.07 E-value=4.9e+02 Score=25.61 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred CCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCccH
Q 007038 96 YPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGPNH 175 (620)
Q Consensus 96 ~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~~~ 175 (620)
.|--+++++++.+.++.+..|.-... ... ..+.+.+.++++++.-.-.|++.|. .
T Consensus 88 iptL~evl~~~~~~~~~l~leiK~~~------------~~~----~~~~~~l~~~l~~~~~~~~v~~~Sf---------~ 142 (230)
T cd08563 88 IPTLEEVLDLLKDKDLLLNIEIKTDV------------IHY----PGIEKKVLELVKEYNLEDRVIFSSF---------N 142 (230)
T ss_pred CCCHHHHHHHHHhcCcEEEEEECCCC------------CcC----hhHHHHHHHHHHHcCCCCCEEEEcC---------C
Confidence 34556888998888888888863211 011 1234556677776643334555542 1
Q ss_pred HHHHHHHHHhCCCCeEec
Q 007038 176 SAAAGWIRGKDPSRLLHY 193 (620)
Q Consensus 176 ~~~~~~ik~~DptRpv~~ 193 (620)
......+|+++|.-++.+
T Consensus 143 ~~~l~~~~~~~p~~~~~~ 160 (230)
T cd08563 143 HESLKRLKKLDPKIKLAL 160 (230)
T ss_pred HHHHHHHHHHCCCCcEEE
Confidence 345677899999876655
No 105
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=24.59 E-value=3.3e+02 Score=25.81 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCcEEEc-cCCCChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHHhC
Q 007038 77 VKDLVLMKQNNINAVRN-SHYPQHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVERDK 155 (620)
Q Consensus 77 ~~Dl~lmK~~g~NavR~-~h~p~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r~r 155 (620)
...+..++++|+.+|=. ...+.+..+++.|++.||-++.-. +. ... ...-...+..+.++-+++..-+
T Consensus 22 ~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~-~~--~~~--------~~~~~~~~~~v~~aL~~ild~~ 90 (164)
T PF03162_consen 22 PANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIP-MS--SSK--------DPWVPISEEQVAEALEIILDPR 90 (164)
T ss_dssp HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE------------------GGG----HHHHHHHHHHHH-GG
T ss_pred hhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEec-cc--ccc--------CccccCCHHHHHHHHHHHhCCC
Confidence 36778899999999744 555567789999999999887532 10 000 0000112233444445666668
Q ss_pred CCceEEE
Q 007038 156 NHASIIC 162 (620)
Q Consensus 156 NHPSIi~ 162 (620)
|||-.|.
T Consensus 91 n~PvLiH 97 (164)
T PF03162_consen 91 NYPVLIH 97 (164)
T ss_dssp G-SEEEE
T ss_pred CCCEEEE
Confidence 9997665
No 106
>PRK12677 xylose isomerase; Provisional
Probab=24.54 E-value=9.3e+02 Score=26.17 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccC---CCC----------hhHHHHHHhhcCCeEEeec-cccccCcccccC
Q 007038 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSH---YPQ----------HPRWYELCDLFGLYMIDEA-NIETHGFYFSEH 129 (620)
Q Consensus 64 ~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h---~p~----------~~~~~dlcDe~Gi~V~~E~-~~~~hg~~~~~~ 129 (620)
+|....+.+.-...+-++.++++|+.+|=++. +|. .+++-+++++.||-|..-. +...|-.. ..
T Consensus 21 ~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~--~~ 98 (384)
T PRK12677 21 DPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF--KD 98 (384)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc--cC
Confidence 44433334445567779999999999997752 321 2478899999999976432 22112100 01
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH--hCCCceEEEEec
Q 007038 130 LKHPTMEPSWAAAMMDRVIGMVER--DKNHASIICWSL 165 (620)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~mV~r--~rNHPSIi~Wsl 165 (620)
......++..++..++.+++.|+- --+=|.|++|+-
T Consensus 99 g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 99 GAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 112245677777666666666643 246688999965
No 107
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=23.98 E-value=1.8e+02 Score=25.76 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCCChhHHHHHHhhcCCeEEee
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYPQHPRWYELCDLFGLYMIDE 116 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p~~~~~~dlcDe~Gi~V~~E 116 (620)
++++.+..-++.++++|+..|=+.-....++..++|.+.||-++..
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEES
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeC
Confidence 5789999999999999999887755567889999999999999854
No 108
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=23.97 E-value=5.4e+02 Score=26.03 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCcEEEc-cCCCC
Q 007038 77 VKDLVLMKQNNINAVRN-SHYPQ 98 (620)
Q Consensus 77 ~~Dl~lmK~~g~NavR~-~h~p~ 98 (620)
..|++.|+..|+-.|=+ +|.|.
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP~ 36 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDPY 36 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCCC
Confidence 56777777777776544 56663
No 109
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.76 E-value=2.5e+02 Score=28.98 Aligned_cols=45 Identities=9% Similarity=-0.111 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEEccCCCC----hhHHHHHHhhcCCeEEe
Q 007038 71 NIESCMVKDLVLMKQNNINAVRNSHYPQ----HPRWYELCDLFGLYMID 115 (620)
Q Consensus 71 ~~~e~~~~Dl~lmK~~g~NavR~~h~p~----~~~~~dlcDe~Gi~V~~ 115 (620)
.+.+..+.|++...+.|+..||+....+ -....+.+.+.|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 5667789999999999999999965544 34578889999988865
No 110
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=23.74 E-value=9.6e+02 Score=26.01 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=76.2
Q ss_pred HcCCcEEEccCCCCh-------hHHHHH------HhhcCCeEEeeccccccCcccccCC---CCCCCCHHHHHHHHHHHH
Q 007038 85 QNNINAVRNSHYPQH-------PRWYEL------CDLFGLYMIDEANIETHGFYFSEHL---KHPTMEPSWAAAMMDRVI 148 (620)
Q Consensus 85 ~~g~NavR~~h~p~~-------~~~~dl------cDe~Gi~V~~E~~~~~hg~~~~~~~---~~~~~~~~~~~~~~~~~~ 148 (620)
++|+..+|+..-+++ ..||+- +-.-|+.|+...+..-.-|.-.... +.-.-..+....+-+.+.
T Consensus 77 ~lg~si~Rv~I~~ndfsl~g~~d~w~kels~Ak~~in~g~ivfASPWspPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~ 156 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLGGSADNWYKELSTAKSAINPGMIVFASPWSPPASMKTTNNRNGGNAGRLKYEKYADYADYLN 156 (433)
T ss_pred ccCceEEEEEecccccccCCCcchhhhhcccchhhcCCCcEEEecCCCCchhhhhccCcCCccccccchhHhHHHHHHHH
Confidence 589999999665555 333321 2335777776432110001000000 000012233444555667
Q ss_pred HHHHHhCCCc-eEEEEecCCCCCCCcc-------HHHHHHHHHHhCC-----CCeEecCCCCC-------------CCCC
Q 007038 149 GMVERDKNHA-SIICWSLGNEAGHGPN-------HSAAAGWIRGKDP-----SRLLHYEGGGS-------------RTPS 202 (620)
Q Consensus 149 ~mV~r~rNHP-SIi~WslgNE~~~g~~-------~~~~~~~ik~~Dp-----tRpv~~~~~~~-------------~~~~ 202 (620)
+.|...+||- .+.+-|+.||+.+.++ .++..+++++.=- .|.+..++... ....
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~lnDp~a~a~ 236 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILNDPKALAN 236 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhccccEEecchhcccccccccccccCHhHhcc
Confidence 7777777665 4888899999987643 2333333333222 34444443221 0234
Q ss_pred cceecCC-CCcH--HHHHHHHhCCCCCCcEEEeccC
Q 007038 203 TDIVCPM-YMRV--WDIVMIAKDPTETRPLILCEYS 235 (620)
Q Consensus 203 ~Di~~~~-Y~~~--~~~~~~~~~~~~~kP~i~~Eyg 235 (620)
.|+++.| |... +...-.++.+..+|-++++|.-
T Consensus 237 ~~ilg~H~Ygg~v~~~p~~lak~~~~gKdlwmte~y 272 (433)
T COG5520 237 MDILGTHLYGGQVSDQPYPLAKQKPAGKDLWMTECY 272 (433)
T ss_pred cceeEeeecccccccchhhHhhCCCcCCceEEeecc
Confidence 6777765 6532 2222333444458899999963
No 111
>PRK09936 hypothetical protein; Provisional
Probab=23.67 E-value=7.3e+02 Score=26.01 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=62.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEc--cCCCC-----h----hHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCC--
Q 007038 70 TNIESCMVKDLVLMKQNNINAVRN--SHYPQ-----H----PRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTME-- 136 (620)
Q Consensus 70 ~~~~e~~~~Dl~lmK~~g~NavR~--~h~p~-----~----~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~-- 136 (620)
-++++.+++-++.+++.||+++=+ +-|-+ . ...++.|.+.||-|+...+..-. | +..+ ..|
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~-y--~q~~---~~d~~ 107 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPE-F--FMHQ---KQDGA 107 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChH-H--HHHH---hcCch
Confidence 489999999999999999999866 33311 1 25689999999999987754211 1 1111 223
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCceE--EEEecCCCCC
Q 007038 137 --PSWAAAMMDRVIGMVERDKNHASI--ICWSLGNEAG 170 (620)
Q Consensus 137 --~~~~~~~~~~~~~mV~r~rNHPSI--i~WslgNE~~ 170 (620)
+.|.+....+...+.+.-++||.+ -.|=+-=|..
T Consensus 108 ~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElD 145 (296)
T PRK09936 108 ALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELD 145 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccc
Confidence 345555555555566677777766 5576665654
No 112
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.55 E-value=4.2e+02 Score=26.71 Aligned_cols=80 Identities=8% Similarity=0.060 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcEEEccCCCC------------hhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHH
Q 007038 76 MVKDLVLMKQNNINAVRNSHYPQ------------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAM 143 (620)
Q Consensus 76 ~~~Dl~lmK~~g~NavR~~h~p~------------~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~ 143 (620)
+.+.+..+.++|++.|-+....+ ...+-++++++||-|..-++. . .+....+++-+++.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~------~---~nl~s~d~~~r~~~ 82 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPY------L---INLASPDKEKVEKS 82 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc------e---ecCCCCCHHHHHHH
Confidence 56889999999999997732211 246788899999986543321 1 11113466677776
Q ss_pred HHHHHHHHHHhC--CCceEEEEe
Q 007038 144 MDRVIGMVERDK--NHASIICWS 164 (620)
Q Consensus 144 ~~~~~~mV~r~r--NHPSIi~Ws 164 (620)
+++++++++.-+ .-+.|+++.
T Consensus 83 ~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 83 IERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcc
Confidence 777777774432 445677654
No 113
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.51 E-value=1.1e+03 Score=26.49 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCCc--------cHHHHHHHHHHhCCCCeEecC
Q 007038 134 TMEPSWAAAMMDRVIGMVERDKNHASIICWSLGNEAGHGP--------NHSAAAGWIRGKDPSRLLHYE 194 (620)
Q Consensus 134 ~~~~~~~~~~~~~~~~mV~r~rNHPSIi~WslgNE~~~g~--------~~~~~~~~ik~~DptRpv~~~ 194 (620)
..||-|++.-..-+++.++.+..--.|..=.-.||..... ...++++.+|+.|+.-.-...
T Consensus 213 P~dplF~eIgs~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 213 PFDPLFQEIGSTFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 4678888887788999999998766676666779986532 135677888999987554443
No 114
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.30 E-value=4.2e+02 Score=27.03 Aligned_cols=62 Identities=16% Similarity=0.109 Sum_probs=41.1
Q ss_pred CCEEEEEEeeecCCCC--CCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCC------ChhHHHHH----HhhcCCeEEee
Q 007038 49 NGNPVVIRGVNRHEHH--PRVGKTNIESCMVKDLVLMKQNNINAVRNSHYP------QHPRWYEL----CDLFGLYMIDE 116 (620)
Q Consensus 49 NGkpi~lrGvn~h~~~--p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p------~~~~~~dl----cDe~Gi~V~~E 116 (620)
++..+.+-.-|.|... +.+|. ++ ..++|++|++.|=+.|.- ...+.... |-+.||.++.+
T Consensus 54 ~~~~i~vgAQn~~~~~~Ga~TGe-vS-------~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvC 125 (250)
T PRK00042 54 KGSNIKLGAQNVHPEDSGAFTGE-IS-------AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILC 125 (250)
T ss_pred cCCCeEEEecccccccCCCccCc-cC-------HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 5556666666655332 23443 23 457899999999886643 34456555 99999999988
Q ss_pred cc
Q 007038 117 AN 118 (620)
Q Consensus 117 ~~ 118 (620)
..
T Consensus 126 iG 127 (250)
T PRK00042 126 VG 127 (250)
T ss_pred cC
Confidence 73
No 115
>PLN02429 triosephosphate isomerase
Probab=21.20 E-value=7.8e+02 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.014 Sum_probs=28.9
Q ss_pred HHHHHHcCCcEEEccCCC------ChhHHHHH----HhhcCCeEEeec
Q 007038 80 LVLMKQNNINAVRNSHYP------QHPRWYEL----CDLFGLYMIDEA 117 (620)
Q Consensus 80 l~lmK~~g~NavR~~h~p------~~~~~~dl----cDe~Gi~V~~E~ 117 (620)
.+++|++|++.|=+.|.- ...+.... |-+.||.++.+.
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCI 187 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACI 187 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEc
Confidence 357899999999886643 34456655 999999999876
No 116
>PF13663 DUF4148: Domain of unknown function (DUF4148)
Probab=20.78 E-value=1.1e+02 Score=23.83 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEEccC-CCCh
Q 007038 70 TNIESCMVKDLVLMKQNNINAVRNSH-YPQH 99 (620)
Q Consensus 70 ~~~~e~~~~Dl~lmK~~g~NavR~~h-~p~~ 99 (620)
..++..++.||..+++.|.+..+-+. ||.+
T Consensus 18 ~~TRAqV~aEL~~a~~~G~~~~~~~~~YP~~ 48 (58)
T PF13663_consen 18 PLTRAQVRAELAQAEAAGYLPSGESDSYPDD 48 (58)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCCCCCCCch
Confidence 48999999999999999999988876 8765
No 117
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.63 E-value=5.1e+02 Score=26.19 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCcEEEccCCCC-------------hhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHH
Q 007038 75 CMVKDLVLMKQNNINAVRNSHYPQ-------------HPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAA 141 (620)
Q Consensus 75 ~~~~Dl~lmK~~g~NavR~~h~p~-------------~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~ 141 (620)
.+.+-++.++++|+..|=++.... -..+.++|+++||-|..-. ..+|. .+.....++..++
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~-~~~~~-----~~~~~~~d~~~r~ 90 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMC-LSGHR-----RFPFGSRDPATRE 90 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEe-ccccc-----CcCCCCCCHHHHH
Confidence 467789999999999997753221 2358899999999876421 11111 0111134565666
Q ss_pred HHHHHHHHHHHH
Q 007038 142 AMMDRVIGMVER 153 (620)
Q Consensus 142 ~~~~~~~~mV~r 153 (620)
..++++++.++.
T Consensus 91 ~~~~~~~~~i~~ 102 (284)
T PRK13210 91 RALEIMKKAIRL 102 (284)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 118
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=20.61 E-value=79 Score=39.90 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=38.9
Q ss_pred CCEEEECC-EEEEEEeeecCCCCCC-CCCCCCHHHHHHHHHHHHHcCCcEEEc
Q 007038 43 PKQLLVNG-NPVVIRGVNRHEHHPR-VGKTNIESCMVKDLVLMKQNNINAVRN 93 (620)
Q Consensus 43 ~~~f~lNG-kpi~lrGvn~h~~~p~-~G~~~~~e~~~~Dl~lmK~~g~NavR~ 93 (620)
.-.+.||| +.+.+-|++.+..-+. .|. -+.+++.|..+|++|+|+|=+
T Consensus 102 ~P~L~i~~~~~lPl~~i~iqTvlsK~mG~---~~~w~~~L~~ik~lGyN~Ihf 151 (1464)
T TIGR01531 102 LPMLYINADKFLPLDSIALQTVLAKLLGP---LSEWEPRLRVAKEKGYNMIHF 151 (1464)
T ss_pred CCeeEECCCcccCcCceeeeeehhhhcCC---HHHHHHHHHHHHHcCCCEEEe
Confidence 45789999 9999999998655433 343 377999999999999999976
No 119
>PRK04302 triosephosphate isomerase; Provisional
Probab=20.59 E-value=7.6e+02 Score=24.33 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=57.2
Q ss_pred HHHHHHcCCcEEEccCC----C--ChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 007038 80 LVLMKQNNINAVRNSHY----P--QHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDRVIGMVER 153 (620)
Q Consensus 80 l~lmK~~g~NavR~~h~----p--~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~mV~r 153 (620)
++++|++|+..|=+-|- + ...++...|.++||.++.+.+ + . ++++..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~----------------~-~-------~~~~~~--- 130 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN----------------N-P-------ETSAAA--- 130 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC----------------C-H-------HHHHHH---
Confidence 88899999999977663 2 234789999999999997642 1 1 123322
Q ss_pred hCCCceEEE----EecCCCCC---C-CccHHHHHHHHHHhCCCCeEecCCC
Q 007038 154 DKNHASIIC----WSLGNEAG---H-GPNHSAAAGWIRGKDPSRLLHYEGG 196 (620)
Q Consensus 154 ~rNHPSIi~----WslgNE~~---~-g~~~~~~~~~ik~~DptRpv~~~~~ 196 (620)
.+.-+-+|. |.+|-..+ . .....++.+.+|+.-+..||.++++
T Consensus 131 ~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Ggg 181 (223)
T PRK04302 131 AALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAG 181 (223)
T ss_pred hcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECC
Confidence 223455666 55543221 1 1235677788888766678888665
No 120
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=20.51 E-value=4.3e+02 Score=30.61 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=43.7
Q ss_pred EEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCCh----hHHHHHHhhcCCeEEee
Q 007038 53 VVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQH----PRWYELCDLFGLYMIDE 116 (620)
Q Consensus 53 i~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~~----~~~~dlcDe~Gi~V~~E 116 (620)
..+||.|.-.+ ...+++.++.|++..+++|+..||+....++ ....++|.+.|+.+...
T Consensus 81 ml~Rg~n~vg~-----~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~ 143 (593)
T PRK14040 81 MLLRGQNLLGY-----RHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGT 143 (593)
T ss_pred EEecCcceecc-----ccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 35677665322 2357788999999999999999999755443 35789999999976543
No 121
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.40 E-value=3.3e+02 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.5
Q ss_pred EEEEE-CCEEEECCEEE
Q 007038 38 QVSKA-PKQLLVNGNPV 53 (620)
Q Consensus 38 ~iei~-~~~f~lNGkpi 53 (620)
.|.++ ++.+++||+++
T Consensus 53 ~v~i~~~g~~~~~~~~v 69 (121)
T TIGR02804 53 LITITADNQLYFNDKPI 69 (121)
T ss_pred EEEEECCCCEEECCccc
Confidence 56666 68899999876
No 122
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=20.33 E-value=2.6e+02 Score=29.95 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=42.6
Q ss_pred CEEEEEEeeecCCCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCC-CC-------------hhHHHHHHhhcCCeEEe
Q 007038 50 GNPVVIRGVNRHEHHPRVGKTNIESCMVKDLVLMKQNNINAVRNSHY-PQ-------------HPRWYELCDLFGLYMID 115 (620)
Q Consensus 50 Gkpi~lrGvn~h~~~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~-p~-------------~~~~~dlcDe~Gi~V~~ 115 (620)
++.+.|-|-|- .-+++++.+-.+.+|++|.+.+|..-+ |. -..+.+.|++.||.++.
T Consensus 92 ~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~t 162 (335)
T PRK08673 92 GKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred CceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEE
Confidence 34555666543 247899999999999999999987221 11 02467779999999999
Q ss_pred ec
Q 007038 116 EA 117 (620)
Q Consensus 116 E~ 117 (620)
|.
T Consensus 163 ev 164 (335)
T PRK08673 163 EV 164 (335)
T ss_pred ee
Confidence 87
No 123
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=20.29 E-value=2.8e+02 Score=26.94 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=34.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEccCCCChh--HHHHHHhhcCCeE
Q 007038 64 HPRVGKTNIESCMVKDLVLMKQNNINAVRNSHYPQHP--RWYELCDLFGLYM 113 (620)
Q Consensus 64 ~p~~G~~~~~e~~~~Dl~lmK~~g~NavR~~h~p~~~--~~~dlcDe~Gi~V 113 (620)
.|..+...+++.++.-++.+|+.|..-|-+.-.+... .+.+.+++.|+.-
T Consensus 13 ~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~~G~~~ 64 (206)
T PF04015_consen 13 PPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKRSGYEE 64 (206)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHHcchhh
Confidence 4456888999999999999999999867775444332 3444444444433
No 124
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=20.14 E-value=3.9e+02 Score=25.64 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHcCCcEEEccCCC-------ChhHHHHHHhhcCCeEEeeccccccCcccccCCCCCCCCHHHHHHHHHH
Q 007038 74 SCMVKDLVLMKQNNINAVRNSHYP-------QHPRWYELCDLFGLYMIDEANIETHGFYFSEHLKHPTMEPSWAAAMMDR 146 (620)
Q Consensus 74 e~~~~Dl~lmK~~g~NavR~~h~p-------~~~~~~dlcDe~Gi~V~~E~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~ 146 (620)
..+.+||+.+|+.|+++|=+ --. .-+.+.+++.+.||.+. -.|+.. . .-|.. +.+.+-
T Consensus 58 RdL~~DL~~Lk~~G~~~Vvt-l~~~~EL~~l~Vp~L~~~~~~~Gi~~~-h~PI~D--------~----~aPd~-~~~~~i 122 (168)
T PF05706_consen 58 RDLQADLERLKDWGAQDVVT-LLTDHELARLGVPDLGEAAQARGIAWH-HLPIPD--------G----SAPDF-AAAWQI 122 (168)
T ss_dssp B-HHHHHHHHHHTT--EEEE--S-HHHHHHTT-TTHHHHHHHTT-EEE-E----T--------T----S---H-HHHHHH
T ss_pred chHHHHHHHHHHCCCCEEEE-eCcHHHHHHcCCccHHHHHHHcCCEEE-ecCccC--------C----CCCCH-HHHHHH
Confidence 36899999999999999966 222 23468899999998764 445432 2 11222 223344
Q ss_pred HHHHHHHhCCCceEEEEecC
Q 007038 147 VIGMVERDKNHASIICWSLG 166 (620)
Q Consensus 147 ~~~mV~r~rNHPSIi~Wslg 166 (620)
+.++....+|.-.|++=+.|
T Consensus 123 ~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 123 LEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 55666666666677776544
No 125
>PRK12313 glycogen branching enzyme; Provisional
Probab=20.05 E-value=1.9e+02 Score=33.64 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=34.2
Q ss_pred CHHHHHHH-HHHHHHcCCcEEEcc-----------CCCC------h---------hHHHHHHhhcCCeEEeecc
Q 007038 72 IESCMVKD-LVLMKQNNINAVRNS-----------HYPQ------H---------PRWYELCDLFGLYMIDEAN 118 (620)
Q Consensus 72 ~~e~~~~D-l~lmK~~g~NavR~~-----------h~p~------~---------~~~~dlcDe~Gi~V~~E~~ 118 (620)
+-..+... |..+|++|+|+|=+. .|.. + .++.+.|.+.||.|+.+.-
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44555555 599999999999762 1110 1 2789999999999998863
No 126
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=20.00 E-value=1.7e+02 Score=30.89 Aligned_cols=44 Identities=23% Similarity=0.109 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEc-------cCCC---------------------ChhHHHHHHhhcCCeEEe
Q 007038 72 IESCMVKDLVLMKQNNINAVRN-------SHYP---------------------QHPRWYELCDLFGLYMID 115 (620)
Q Consensus 72 ~~e~~~~Dl~lmK~~g~NavR~-------~h~p---------------------~~~~~~dlcDe~Gi~V~~ 115 (620)
+++.+.+-|+.||++|||+|=+ +.|| +=..+++.|.+.||-|..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHA 88 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHA 88 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEE
Confidence 7899999999999999999754 1111 113689999999998854
Done!