BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007039
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RYS|A Chain A, The Crystal Structure Of Adenine Deaminase (Aaur1117)
From Arthrobacter Aurescens
pdb|3RYS|B Chain B, The Crystal Structure Of Adenine Deaminase (Aaur1117)
From Arthrobacter Aurescens
Length = 343
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 15 EERMFNVPNVADLEKKMEETIQKDPI-------AISLPHRDIQELPERLQCPNLQLFL-L 66
E+ P VA+L +E T+Q + I I LP+ DI+EL E+ + +LQ FL L
Sbjct: 6 EKTTSTAPPVAELHLHIEGTLQPELIFALAERNGIELPYEDIEELREKYEFTDLQSFLDL 65
Query: 67 YTEGNGPMQVSDHF 80
Y +Q F
Sbjct: 66 YYANMAVLQTEQDF 79
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 250
Query: 166 LEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG 197
+ +AP +S L++L EL +G N S + G
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLAG 281
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS 343
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 344 SLANLTNINWLSA-GHNQISDLTPLANL 370
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 250
Query: 166 LEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG 197
+ +AP +S L++L EL +G N S + G
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLAG 281
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFSNNKVSDVS 343
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 344 SLANLTNINWLSA-GHNQISDLTPLANL 370
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 196 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 250
Query: 166 LEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG 197
+ +AP +S L++L EL +G N S + G
Sbjct: 251 ISNLAP--LSGLTKLTELKLGANQISNISPLAG 281
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS 343
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 344 SLANLTNINWLSA-GHNQISDLTPLANL 370
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 249
Query: 166 LEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG 197
+ +AP +S L++L EL +G N S + G
Sbjct: 250 ISNLAP--LSGLTKLTELKLGANQISNISPLAG 280
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFSNNKVSDVS 342
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 343 SLANLTNINWLSA-GHNQISDLTPLANL 369
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 195 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 249
Query: 166 LEVIAPNVISKLSQLEELYMG-NGFSGWEKVEG 197
+ +AP +S L++L EL +G N S + G
Sbjct: 250 ISNLAP--LSGLTKLTELKLGANQISNISPLAG 280
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 284 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS 342
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 343 SLANLTNINWLSA-GHNQISDLTPLANL 369
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 199 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 253
Query: 166 LEVIAPNVISKLSQLEELYMG 186
+ +AP +S L++L EL +G
Sbjct: 254 ISNLAP--LSGLTKLTELKLG 272
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 288 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS 346
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 347 SLANLTNINWLSA-GHNQISDLTPLANL 373
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 109 NLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG---QLTRLQLLDLSNCWW 165
NL++L +++DI +G L L+ LSL N NQL +IG LT L LDL+N
Sbjct: 200 NLESLIATNNQISDITPLGILTNLDELSL---NGNQLK-DIGTLASLTNLTDLDLANN-Q 254
Query: 166 LEVIAPNVISKLSQLEELYMG 186
+ +AP +S L++L EL +G
Sbjct: 255 ISNLAP--LSGLTKLTELKLG 273
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQ------------- 156
L L L+ +L DI+ I LK L L+L ++NI+ + + LT+LQ
Sbjct: 289 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNKVSDVS 347
Query: 157 -LLDLSNCWWLEVIAPNVISKLSQLEEL 183
L +L+N WL N IS L+ L L
Sbjct: 348 SLANLTNINWLSA-GHNQISDLTPLANL 374
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 126 IGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
IG + L IL+L +++I+ +P E+G L L +LDLS+ L+ P +S L+ L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 707
Query: 185 MGN 187
+ N
Sbjct: 708 LSN 710
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 126 IGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184
IG + L IL+L +++I+ +P E+G L L +LDLS+ L+ P +S L+ L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 710
Query: 185 MGN 187
+ N
Sbjct: 711 LSN 713
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 58 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 116
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 117 PLGALRGLGELQELYLKGN 135
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 129 LKKLEILSLAYSNI--NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186
L LE+L +A ++ N LP +L L LDLS C LE ++P + LS L+ L M
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 207
Query: 187 NG 188
+
Sbjct: 208 HN 209
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD CEL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 129 LKKLEILSLAYSNI--NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186
L LE+L +A ++ N LP +L L LDLS C LE ++P + LS L+ L M
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMA 502
Query: 187 NG 188
+
Sbjct: 503 SN 504
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 129 LKKLEILSLAYSNI--NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186
L LE+L +A ++ N LP +L L LDLS C LE ++P + LS L+ L M
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 526
Query: 187 NG 188
+
Sbjct: 527 HN 528
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 129 LKKLEILSLAYSNI--NQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186
L LE+L +A ++ N LP +L L LDLS C LE ++P + LS L+ L M
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 502
Query: 187 NG 188
+
Sbjct: 503 HN 504
>pdb|4HDE|A Chain A, The Crystal Structure Of A Sco1SENC FAMILY LIPOPROTEIN
FROM BACILLUS Anthracis Str. Ames
Length = 170
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 392 NLLRLQKVKVEDCDDLKMI---IGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448
N +LQK E+ D++ + + PD++KP + FI+ ED + L
Sbjct: 54 NXAKLQKXAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNL-------LTGY 106
Query: 449 SLTNIKKLWSDQFQGI 464
SL +I K D FQ +
Sbjct: 107 SLEDITKFSKDNFQSL 122
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I ++ V + +LT+LQ L LS
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLS 184
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 128 QLKKLEILSLAYSNINQLPVE----IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEEL 183
L LE+L L ++I Q+ V + L L+L D WL VI LS+L EL
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLREL 152
Query: 184 YMGN 187
++ N
Sbjct: 153 WLRN 156
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I+ + V + LT+LQ L LS
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I+ + V + LT+LQ L LS
Sbjct: 134 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 184
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I+ + V + LT+LQ L LS
Sbjct: 136 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I+ + V + LT+LQ L LS
Sbjct: 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 183
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD EL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD EL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161
L++L L ++ DI + +L KL+ LSL + I+ + V + LT+LQ L LS
Sbjct: 156 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 206
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 110 LQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVI 169
L L LD EL + G L L L L+++ + LP+ L L +LD+S L +
Sbjct: 57 LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSL 115
Query: 170 APNVISKLSQLEELYM-GN 187
+ L +L+ELY+ GN
Sbjct: 116 PLGALRGLGELQELYLKGN 134
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 446 ELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN-- 503
++VS +W + I C+++ + W +R+ +LF V+ G + E +N
Sbjct: 75 DVVSWEEYLAMWE---KTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYC 131
Query: 504 ------CRSIEGVVNTTTLGGRDEFKV--FPKLHY 530
C + V N T GG+ F + + +L+Y
Sbjct: 132 KNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYY 166
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 440 PRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHL 499
P + L+L+ T+++ + S F + N++++ V L+ L S+S N L ++ H+
Sbjct: 31 PSTQTLKLIE-THLRTIPSHAFSNL---PNISRIYVSIDVTLQQLESHSFYN-LSKVTHI 85
Query: 500 EIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSL 533
EIRN R++ T D K P L +L +
Sbjct: 86 EIRNTRNL-------TYIDPDALKELPLLKFLGI 112
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 22 PNVADLEKKMEETIQKDPIAISLPHRDIQE-----LPERLQCPNLQLFLLYTEGNGPM 74
P + +LE + E +KDPI S + I + +PE + N+Q+ ++ G GP+
Sbjct: 314 PLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,611,537
Number of Sequences: 62578
Number of extensions: 630195
Number of successful extensions: 1486
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 108
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)