Query 007039
Match_columns 620
No_of_seqs 243 out of 2591
Neff 10.3
Searched_HMMs 46136
Date Thu Mar 28 18:04:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-33 3.3E-38 325.0 28.2 512 36-613 68-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.5E-32 1.6E-36 310.9 25.7 505 36-606 92-607 (968)
3 PLN03210 Resistant to P. syrin 100.0 4.1E-28 8.8E-33 279.8 24.4 397 1-510 490-909 (1153)
4 PLN03210 Resistant to P. syrin 99.9 9E-24 1.9E-28 243.9 23.1 386 74-582 547-946 (1153)
5 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.5E-29 214.5 5.1 392 34-503 49-448 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.9 3.7E-23 7.9E-28 226.5 15.6 372 1-510 483-863 (889)
7 KOG0444 Cytoskeletal regulator 99.9 2.7E-24 5.9E-29 213.3 -2.0 370 59-583 7-379 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.9E-25 4.1E-30 210.7 -10.0 262 37-322 45-308 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 5.1E-24 1.1E-28 201.1 -2.4 443 59-605 45-540 (565)
10 KOG0444 Cytoskeletal regulator 99.9 4.5E-24 9.7E-29 211.8 -4.2 220 34-266 4-231 (1255)
11 KOG4194 Membrane glycoprotein 99.9 3.7E-22 8.1E-27 197.0 6.2 362 34-475 75-446 (873)
12 KOG0618 Serine/threonine phosp 99.9 1.6E-23 3.5E-28 217.3 -3.9 461 39-605 23-488 (1081)
13 KOG0618 Serine/threonine phosp 99.8 1.5E-21 3.1E-26 202.9 -2.2 416 39-538 47-488 (1081)
14 KOG0617 Ras suppressor protein 99.6 5.3E-18 1.1E-22 142.2 -4.2 151 36-191 32-186 (264)
15 KOG0617 Ras suppressor protein 99.6 7.7E-18 1.7E-22 141.2 -4.8 170 48-231 22-194 (264)
16 PRK15370 E3 ubiquitin-protein 99.4 7.6E-13 1.7E-17 143.7 13.3 165 35-226 176-341 (754)
17 KOG4658 Apoptotic ATPase [Sign 99.4 2.8E-13 6.1E-18 149.3 9.3 128 83-221 521-653 (889)
18 KOG4341 F-box protein containi 99.4 2.8E-15 6.2E-20 143.4 -5.5 150 438-608 292-441 (483)
19 PRK15387 E3 ubiquitin-protein 99.4 2.1E-12 4.6E-17 139.4 15.7 172 35-242 220-392 (788)
20 PRK15370 E3 ubiquitin-protein 99.4 2.3E-12 5.1E-17 139.9 14.8 188 26-242 189-377 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 1.1E-11 2.5E-16 133.8 17.3 170 36-240 200-370 (788)
22 KOG4237 Extracellular matrix p 99.3 2.6E-13 5.6E-18 129.1 1.1 265 22-295 53-357 (498)
23 KOG4341 F-box protein containi 99.2 3.3E-13 7.1E-18 129.5 -3.6 271 312-609 139-417 (483)
24 KOG4237 Extracellular matrix p 99.2 2.2E-12 4.8E-17 122.8 0.6 305 53-403 38-355 (498)
25 cd00116 LRR_RI Leucine-rich re 99.1 3.8E-11 8.2E-16 120.8 4.3 179 37-221 23-232 (319)
26 cd00116 LRR_RI Leucine-rich re 99.1 7E-11 1.5E-15 118.9 5.0 160 57-222 21-205 (319)
27 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 100.8 5.8 102 38-143 20-126 (175)
28 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6E-15 100.7 5.8 107 83-191 17-126 (175)
29 KOG1259 Nischarin, modulator o 99.0 5.5E-11 1.2E-15 109.4 0.0 137 82-228 281-417 (490)
30 KOG0532 Leucine-rich repeat (L 99.0 4.3E-11 9.4E-16 119.4 -1.4 180 36-231 74-255 (722)
31 KOG0532 Leucine-rich repeat (L 98.9 1.6E-10 3.4E-15 115.5 -2.0 187 41-243 54-245 (722)
32 COG4886 Leucine-rich repeat (L 98.8 3.9E-09 8.5E-14 109.4 6.9 185 42-241 98-286 (394)
33 KOG3207 Beta-tubulin folding c 98.8 7.8E-10 1.7E-14 107.2 1.4 174 82-263 143-332 (505)
34 KOG1259 Nischarin, modulator o 98.8 6.5E-10 1.4E-14 102.4 -0.1 130 36-170 283-415 (490)
35 COG4886 Leucine-rich repeat (L 98.8 7.6E-09 1.6E-13 107.2 6.4 187 63-266 97-286 (394)
36 KOG3207 Beta-tubulin folding c 98.7 6.2E-09 1.3E-13 101.1 1.7 204 35-240 119-334 (505)
37 KOG2120 SCF ubiquitin ligase, 98.5 3.6E-09 7.8E-14 97.6 -4.5 188 369-603 186-373 (419)
38 PRK15386 type III secretion pr 98.5 1.6E-07 3.5E-12 93.4 6.3 143 438-614 50-203 (426)
39 KOG1859 Leucine-rich repeat pr 98.5 8.8E-09 1.9E-13 106.0 -3.8 178 34-222 81-291 (1096)
40 PLN03150 hypothetical protein; 98.4 7.8E-07 1.7E-11 96.8 10.1 105 86-191 419-528 (623)
41 PLN03150 hypothetical protein; 98.4 7.7E-07 1.7E-11 96.8 9.8 105 109-222 419-527 (623)
42 PRK15386 type III secretion pr 98.4 1E-06 2.2E-11 87.8 9.4 163 366-607 50-214 (426)
43 KOG2120 SCF ubiquitin ligase, 98.4 9.4E-09 2E-13 94.9 -4.7 66 309-381 311-376 (419)
44 KOG1947 Leucine rich repeat pr 98.4 3.8E-08 8.2E-13 105.2 -1.6 124 283-409 187-310 (482)
45 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.8E-12 67.3 2.9 54 87-140 3-59 (61)
46 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.2E-12 67.6 2.6 60 59-120 1-61 (61)
47 KOG3665 ZYG-1-like serine/thre 98.3 4.3E-07 9.4E-12 98.3 4.2 103 36-140 121-230 (699)
48 KOG0531 Protein phosphatase 1, 98.2 1.9E-07 4.1E-12 97.0 -1.9 107 82-191 92-199 (414)
49 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.3E-11 93.3 4.1 135 84-221 121-261 (699)
50 KOG1909 Ran GTPase-activating 98.1 2E-06 4.4E-11 81.7 3.0 135 57-191 90-254 (382)
51 KOG1947 Leucine rich repeat pr 98.1 6.2E-07 1.3E-11 95.9 -0.5 250 310-608 187-442 (482)
52 PF12799 LRR_4: Leucine Rich r 98.1 5.4E-06 1.2E-10 54.9 3.9 37 86-122 2-38 (44)
53 KOG2982 Uncharacterized conser 98.0 1.4E-06 2.9E-11 80.9 0.9 104 61-164 47-157 (418)
54 KOG1909 Ran GTPase-activating 98.0 2.6E-06 5.6E-11 81.0 1.9 111 106-221 90-224 (382)
55 KOG0531 Protein phosphatase 1, 98.0 1.2E-06 2.6E-11 90.9 -0.4 188 36-240 71-263 (414)
56 PF12799 LRR_4: Leucine Rich r 98.0 1.1E-05 2.3E-10 53.5 3.9 34 131-164 2-35 (44)
57 KOG1859 Leucine-rich repeat pr 97.8 6.1E-07 1.3E-11 92.8 -5.6 108 82-191 184-292 (1096)
58 KOG4579 Leucine-rich repeat (L 97.8 3.4E-06 7.4E-11 69.2 -0.3 88 83-171 51-140 (177)
59 KOG4579 Leucine-rich repeat (L 97.7 5.9E-06 1.3E-10 67.8 -0.9 108 39-148 29-141 (177)
60 KOG2982 Uncharacterized conser 97.6 1.9E-05 4E-10 73.6 0.8 84 176-266 69-155 (418)
61 KOG1644 U2-associated snRNP A' 97.5 0.00021 4.6E-09 63.1 5.4 121 40-164 22-151 (233)
62 KOG1644 U2-associated snRNP A' 97.4 0.00028 6E-09 62.3 5.5 102 84-187 41-149 (233)
63 KOG2123 Uncharacterized conser 97.2 4.3E-05 9.2E-10 70.6 -2.1 78 58-140 18-98 (388)
64 COG5238 RNA1 Ran GTPase-activa 96.8 0.0018 4E-08 59.9 5.0 38 127-164 89-131 (388)
65 KOG2123 Uncharacterized conser 96.6 0.00021 4.6E-09 66.1 -2.5 101 83-184 17-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.5 0.002 4.4E-08 59.5 3.4 82 83-164 63-154 (260)
67 COG5238 RNA1 Ran GTPase-activa 96.5 0.0053 1.2E-07 56.9 5.5 161 58-222 29-226 (388)
68 KOG2739 Leucine-rich acidic nu 96.1 0.0032 6.9E-08 58.3 2.3 59 106-164 63-127 (260)
69 KOG3864 Uncharacterized conser 95.7 0.0013 2.8E-08 58.3 -1.9 68 465-539 122-189 (221)
70 PF00560 LRR_1: Leucine Rich R 95.5 0.0051 1.1E-07 33.7 0.6 19 132-150 2-20 (22)
71 PF13306 LRR_5: Leucine rich r 95.5 0.033 7.1E-07 47.2 5.9 102 79-186 6-111 (129)
72 PF13306 LRR_5: Leucine rich r 95.4 0.037 8E-07 46.8 5.8 116 57-181 10-129 (129)
73 KOG3864 Uncharacterized conser 94.9 0.0085 1.8E-07 53.3 0.4 70 335-407 120-189 (221)
74 PF00560 LRR_1: Leucine Rich R 94.6 0.0093 2E-07 32.6 0.0 19 87-105 2-20 (22)
75 PF13504 LRR_7: Leucine rich r 93.5 0.048 1E-06 27.6 1.4 15 131-145 2-16 (17)
76 PF13504 LRR_7: Leucine rich r 92.2 0.084 1.8E-06 26.7 1.1 15 86-100 2-16 (17)
77 smart00370 LRR Leucine-rich re 89.9 0.3 6.6E-06 27.8 2.1 19 130-148 2-20 (26)
78 smart00369 LRR_TYP Leucine-ric 89.9 0.3 6.6E-06 27.8 2.1 19 130-148 2-20 (26)
79 KOG0473 Leucine-rich repeat pr 88.6 0.019 4.2E-07 52.1 -5.2 83 82-164 39-122 (326)
80 smart00367 LRR_CC Leucine-rich 87.0 0.29 6.3E-06 27.9 0.8 18 467-484 1-18 (26)
81 smart00367 LRR_CC Leucine-rich 86.4 0.39 8.5E-06 27.4 1.1 17 592-608 1-17 (26)
82 smart00370 LRR Leucine-rich re 85.0 0.94 2E-05 25.7 2.3 19 85-103 2-20 (26)
83 smart00369 LRR_TYP Leucine-ric 85.0 0.94 2E-05 25.7 2.3 19 85-103 2-20 (26)
84 KOG0473 Leucine-rich repeat pr 81.2 0.069 1.5E-06 48.7 -5.3 84 57-143 40-124 (326)
85 PF13516 LRR_6: Leucine Rich r 66.5 1.3 2.9E-05 24.5 -0.6 12 109-120 3-14 (24)
86 smart00364 LRR_BAC Leucine-ric 63.0 5.2 0.00011 22.8 1.3 18 85-102 2-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 62.6 6.4 0.00014 22.5 1.7 15 130-144 2-16 (26)
88 KOG4308 LRR-containing protein 49.5 0.82 1.8E-05 48.1 -6.1 19 101-119 165-183 (478)
89 smart00368 LRR_RI Leucine rich 41.1 24 0.00052 20.4 1.8 12 86-97 3-14 (28)
90 KOG4308 LRR-containing protein 39.5 1.5 3.2E-05 46.2 -6.0 155 36-191 114-303 (478)
91 KOG3763 mRNA export factor TAP 26.5 49 0.0011 34.9 2.5 79 81-159 214-307 (585)
92 KOG3763 mRNA export factor TAP 22.8 57 0.0012 34.5 2.1 79 57-136 216-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-33 Score=324.96 Aligned_cols=512 Identities=18% Similarity=0.152 Sum_probs=323.5
Q ss_pred cCCcEEEEccCCCCcCC-CCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC-ChhhhhcccCCcE
Q 007039 36 QKDPIAISLPHRDIQEL-PERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS-LPSSLGRLINLQT 112 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~ 112 (620)
..+++.|+++++.+... +... .+++|++|++++|.. ...+|..++..+++||+|++++|.+.. +|. +.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 35799999999987543 3333 899999999999987 668898887789999999999998764 553 46788999
Q ss_pred EEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCc
Q 007039 113 LCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGF 189 (620)
Q Consensus 113 L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~ 189 (620)
|++++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 9999988764 678889999999999998765 77888889999999999988855566765 8889999999998887
Q ss_pred cccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecc
Q 007039 190 SGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGI 267 (620)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 267 (620)
+.. ..+..++++++|++|++++|... .+|..+.. ++|+.|.+..+..... ....+..+++|+.|+++++
T Consensus 224 l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 224 LSG--------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cCC--------cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEEECcCC
Confidence 752 23456788888888888887754 45555544 7888888865432211 1122556778888888773
Q ss_pred cccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhcc
Q 007039 268 KKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSL 347 (620)
Q Consensus 268 ~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l 347 (620)
.-...+ +.+ ...+++|+.|++.++......... +..+++|+.|+++++.-...++ .....+++|+.|++
T Consensus 295 ~l~~~~--p~~-~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p-----~~l~~~~~L~~L~L 363 (968)
T PLN00113 295 SLSGEI--PEL-VIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIP-----KNLGKHNNLTVLDL 363 (968)
T ss_pred eeccCC--Chh-HcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCC-----hHHhCCCCCcEEEC
Confidence 221111 122 224567777777765543333222 3367778888887775322221 13445677777777
Q ss_pred ccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccc-cc
Q 007039 348 MFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGF-IE 426 (620)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~-~~ 426 (620)
+++.--..++.. ...+++|+.|.+.++.-....| ..+..+++|+.|++.+|..-... +......+.+... +.
T Consensus 364 s~n~l~~~~p~~----~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 364 STNNLTGEIPEG----LCSSGNLFKLILFSNSLEGEIP--KSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDIS 436 (968)
T ss_pred CCCeeEeeCChh----HhCcCCCCEEECcCCEecccCC--HHHhCCCCCCEEECcCCEeeeEC-ChhHhcCCCCCEEECc
Confidence 765422222211 2334566666666543222222 23455666666666665432221 1112222222221 11
Q ss_pred cccC--CCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 427 INAE--DDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 427 ~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
.+.- ........+++|+.|++.+|.-...++.. ...++|+.|++++| .++... +..+..+++|++|++++|
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-----~~~~~L~~L~ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-----FGSKRLENLDLSRN-QFSGAV-PRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecCcc-----cccccceEEECcCC-ccCCcc-ChhhhhhhccCEEECcCC
Confidence 1100 01112345778888888887543333221 13577888888886 444332 345667888888888887
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
.-...+ ++.... +++|+.|+|+++.--. .+|+.+..+++|++|++++|.-...+|.
T Consensus 510 ~l~~~~--p~~~~~------l~~L~~L~Ls~N~l~~----------------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 510 KLSGEI--PDELSS------CKKLVSLDLSHNQLSG----------------QIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred cceeeC--ChHHcC------ccCCCEEECCCCcccc----------------cCChhHhCcccCCEEECCCCcccccCCh
Confidence 544333 333333 6778888887764221 3455667788899999998865445544
Q ss_pred ccccCCcccCccEEEeccCcCcccccchh
Q 007039 585 HQLASKSFSKLKKLKISGCNNLLNIFPPL 613 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l~~~~p~~ 613 (620)
. +.++++|+.|++++|+-... +|..
T Consensus 566 ~---l~~l~~L~~l~ls~N~l~~~-~p~~ 590 (968)
T PLN00113 566 N---LGNVESLVQVNISHNHLHGS-LPST 590 (968)
T ss_pred h---HhcCcccCEEeccCCcceee-CCCc
Confidence 3 34678899999988875554 6643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.5e-32 Score=310.92 Aligned_cols=505 Identities=17% Similarity=0.113 Sum_probs=348.2
Q ss_pred cCCcEEEEccCCCCc-CCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCC-CChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDIQ-ELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~-~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~ 111 (620)
.++++.|++++|.+. .+|... .+++||+|++++|.. ...+|. ..+++|++|++++|.+. .+|..++++.+|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 678999999999885 566543 889999999999987 556664 46899999999999986 5788899999999
Q ss_pred EEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCC
Q 007039 112 TLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNG 188 (620)
Q Consensus 112 ~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~ 188 (620)
+|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc
Confidence 99999999764 788999999999999999776 68899999999999999999855567776 899999999999998
Q ss_pred ccccccccCCCCcchhhhcCCCCCCEEEeecCCCC-CCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 189 FSGWEKVEGGSNASLVELERLTELTTLEIEVPDAE-ILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
.+.. ..+..++++++|+.|++++|... .+|..+.. ++|+.|++..+..... ....+..+++|+.|++.+
T Consensus 247 ~l~~--------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 247 NLTG--------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEILHLFS 317 (968)
T ss_pred eecc--------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEEECCC
Confidence 7752 34467888999999999988754 45555555 8899998865432211 112256778899999987
Q ss_pred ccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhc
Q 007039 267 IKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALS 346 (620)
Q Consensus 267 ~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 346 (620)
+.-... .......+++|+.|++.++......... ++.+++|+.|+++++.-...++ .....+++|+.|+
T Consensus 318 n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~~~~L~~L~Ls~n~l~~~~p-----~~~~~~~~L~~L~ 386 (968)
T PLN00113 318 NNFTGK---IPVALTSLPRLQVLQLWSNKFSGEIPKN---LGKHNNLTVLDLSTNNLTGEIP-----EGLCSSGNLFKLI 386 (968)
T ss_pred CccCCc---CChhHhcCCCCCEEECcCCCCcCcCChH---HhCCCCCcEEECCCCeeEeeCC-----hhHhCcCCCCEEE
Confidence 432111 1122234688999998877654333333 3478899999998875322221 1334567788888
Q ss_pred cccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc-cc
Q 007039 347 LMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG-FI 425 (620)
Q Consensus 347 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~-~~ 425 (620)
+.++.-...++.. .+.+++|+.|++.+|.--...| ..+.++++|+.|+++++. +...........+.++. .+
T Consensus 387 l~~n~l~~~~p~~----~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 387 LFSNSLEGEIPKS----LGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNN-LQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CcCCEecccCCHH----HhCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCc-ccCccChhhccCCCCcEEEC
Confidence 8776532222221 4567788888888764333333 245677888888887754 33222222333444444 22
Q ss_pred ccccCCCC-ccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccc
Q 007039 426 EINAEDDP-VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC 504 (620)
Q Consensus 426 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 504 (620)
..|.-... ......++|+.|++++|. +..... ..+..+++|+.|++++| .++... +..+..+++|++|+|++|
T Consensus 460 ~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~-p~~~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVP---RKLGSLSELMQLKLSEN-KLSGEI-PDELSSCKKLVSLDLSHN 533 (968)
T ss_pred cCceeeeecCcccccccceEEECcCCc-cCCccC---hhhhhhhccCEEECcCC-cceeeC-ChHHcCccCCCEEECCCC
Confidence 22221111 112235789999999984 432222 12346899999999997 555442 456788999999999997
Q ss_pred ccccccccccccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhcc
Q 007039 505 RSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWH 584 (620)
Q Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~ 584 (620)
.-...+ +..... +++|+.|+++++.-.. .+|..+..+++|+.|++++|+-...+|.
T Consensus 534 ~l~~~~--p~~~~~------l~~L~~L~Ls~N~l~~----------------~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 534 QLSGQI--PASFSE------MPVLSQLDLSQNQLSG----------------EIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccccC--ChhHhC------cccCCEEECCCCcccc----------------cCChhHhcCcccCEEeccCCcceeeCCC
Confidence 744333 333333 7899999999885322 3566778899999999999986667765
Q ss_pred ccccCCcccCccEEEeccCcCc
Q 007039 585 HQLASKSFSKLKKLKISGCNNL 606 (620)
Q Consensus 585 ~~~~~~~~~sL~~L~i~~C~~l 606 (620)
.+ .+.++....+.+.+.+
T Consensus 590 ~~----~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 590 TG----AFLAINASAVAGNIDL 607 (968)
T ss_pred cc----hhcccChhhhcCCccc
Confidence 53 2344444444454433
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.96 E-value=4.1e-28 Score=279.78 Aligned_cols=397 Identities=20% Similarity=0.230 Sum_probs=242.8
Q ss_pred CchhHHHHHHHhhccCCeeEecCccchhhhhh---------ccccCCcEEEEccCCCCcCC--CC--cCCCCCccEEEcc
Q 007039 1 MHDVIHVVAVSIATEERMFNVPNVADLEKKME---------ETIQKDPIAISLPHRDIQEL--PE--RLQCPNLQLFLLY 67 (620)
Q Consensus 1 mHdl~~dla~~~s~~~~~~~~~~~~~~~~~~~---------~~~~~~lr~L~l~~~~~~~l--~~--~~~~~~Lr~L~l~ 67 (620)
|||++||||+++++++.- +++++...|.. .....+++.+++....+..+ .. ..+|++|+.|.+.
T Consensus 490 MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred hhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEe
Confidence 999999999999987631 12222222221 11245678887776655432 11 2278899999887
Q ss_pred cCCC-----CCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCC-
Q 007039 68 TEGN-----GPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS- 140 (620)
Q Consensus 68 ~~~~-----~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~- 140 (620)
.+.. ....+|.++..-.+.||+|++.++.++.+|..+ ...+|++|+++++.+.. +..++.+++|++|+++++
T Consensus 567 ~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 567 TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred cccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 6532 023456554222356999999998888888877 56889999999988887 677888999999999887
Q ss_pred CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecC
Q 007039 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 141 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (620)
.+..+| .++.+++|++|++++|..+..+|.. +.++++|+.|++.+|......+ .. .++++|+.|+++++
T Consensus 646 ~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp--------~~-i~l~sL~~L~Lsgc 714 (1153)
T PLN03210 646 NLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP--------TG-INLKSLYRLNLSGC 714 (1153)
T ss_pred CcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC--------Cc-CCCCCCCEEeCCCC
Confidence 577787 4788899999999998878888876 8888999999988875432211 11 25777888888766
Q ss_pred CC-CCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhh
Q 007039 221 DA-EILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQS 299 (620)
Q Consensus 221 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~ 299 (620)
.. ..+|. ...+++.|++.+ +.+. .
T Consensus 715 ~~L~~~p~---------------------------~~~nL~~L~L~~----n~i~------------------------~ 739 (1153)
T PLN03210 715 SRLKSFPD---------------------------ISTNISWLDLDE----TAIE------------------------E 739 (1153)
T ss_pred CCcccccc---------------------------ccCCcCeeecCC----Cccc------------------------c
Confidence 42 12221 012233333333 1111 0
Q ss_pred hcccCCcCCCccccceEEeccCCCceEeeeccc--ccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeec
Q 007039 300 VVHELDDGEGFPRLKRLLVTDCSEILHIVGSVR--RVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDS 377 (620)
Q Consensus 300 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 377 (620)
++....+++|++|.+.++.....+..... ......+++|+.|++++|+.+..++.. .+.+++|+.|++.+
T Consensus 740 ----lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s----i~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 740 ----FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIEN 811 (1153)
T ss_pred ----ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----hhCCCCCCEEECCC
Confidence 01011233444444433321110000000 001123456777777776666665543 45677777777777
Q ss_pred CCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccccc
Q 007039 378 CRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLW 457 (620)
Q Consensus 378 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 457 (620)
|+.++.+|.. .++++|++|++++|..+...+. ..++|+.|++.++ +++.++
T Consensus 812 C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-------------------------~~~nL~~L~Ls~n-~i~~iP 862 (1153)
T PLN03210 812 CINLETLPTG---INLESLESLDLSGCSRLRTFPD-------------------------ISTNISDLNLSRT-GIEEVP 862 (1153)
T ss_pred CCCcCeeCCC---CCccccCEEECCCCCccccccc-------------------------cccccCEeECCCC-CCccCh
Confidence 7777776553 1567777777777776655431 1346777777665 555544
Q ss_pred ccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEccccccccc
Q 007039 458 SDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGV 510 (620)
Q Consensus 458 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~ 510 (620)
.. +..+++|+.|++.+|++|+.++ .....+++|+.+++++|++|+.+
T Consensus 863 ~s----i~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 863 WW----IEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred HH----HhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCcccccc
Confidence 32 2356777777777777777763 23456677777777777777654
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=9e-24 Score=243.93 Aligned_cols=386 Identities=18% Similarity=0.203 Sum_probs=273.5
Q ss_pred cccchHHHhcCCCCcEEEcCCCCC-------CCChhhhhccc-CCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCC
Q 007039 74 MQVSDHFFEGMEGLKVLQFPGIGS-------SSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQ 144 (620)
Q Consensus 74 ~~~~~~~~~~l~~Lr~L~l~~~~~-------~~lp~~~~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~ 144 (620)
..+....|.++++|++|.+..+.. ..+|..+..++ +|++|++.++.++. |..+ .+.+|++|++.++.+..
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc
Confidence 456667789999999999976542 24677777664 59999999999888 6666 67999999999999999
Q ss_pred CChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC-CC
Q 007039 145 LPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD-AE 223 (620)
Q Consensus 145 lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~ 223 (620)
+|.++..+++|+.|+++++..++.+|. ++.+++|++|++.+|... ...+..++++++|+.|+++++. ..
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L--------~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL--------VELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc--------cccchhhhccCCCCEEeCCCCCCcC
Confidence 999999999999999999887888886 889999999999988654 2344677888899999988654 33
Q ss_pred CCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhccc
Q 007039 224 ILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHE 303 (620)
Q Consensus 224 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 303 (620)
.+|..+ .+ ++|+.|.+.+|..+..+.
T Consensus 696 ~Lp~~i-------------------------~l---------------------------~sL~~L~Lsgc~~L~~~p-- 721 (1153)
T PLN03210 696 ILPTGI-------------------------NL---------------------------KSLYRLNLSGCSRLKSFP-- 721 (1153)
T ss_pred ccCCcC-------------------------CC---------------------------CCCCEEeCCCCCCccccc--
Confidence 333221 12 334444444443332221
Q ss_pred CCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhcc-CCC--CCCcCCCCcEEEeecCCC
Q 007039 304 LDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYS-QLR--EDQSFSNLRIINVDSCRK 380 (620)
Q Consensus 304 l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~--~~~~~~~L~~L~l~~c~~ 380 (620)
...++|++|++.++. +..++ ....+++|++|.+.++....-+... .+. ....+++|+.|++.+|+.
T Consensus 722 ----~~~~nL~~L~L~~n~-i~~lP------~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~ 790 (1153)
T PLN03210 722 ----DISTNISWLDLDETA-IEEFP------SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790 (1153)
T ss_pred ----cccCCcCeeecCCCc-ccccc------ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence 124678899998874 44333 2235788998888776532211100 000 022357899999999998
Q ss_pred ceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccC
Q 007039 381 LKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQ 460 (620)
Q Consensus 381 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 460 (620)
+..+|. .++++++|+.|++++|.+++.++.. ..+++|+.|++++|.++..++.
T Consensus 791 l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~-----------------------~~L~sL~~L~Ls~c~~L~~~p~-- 843 (1153)
T PLN03210 791 LVELPS--SIQNLHKLEHLEIENCINLETLPTG-----------------------INLESLESLDLSGCSRLRTFPD-- 843 (1153)
T ss_pred ccccCh--hhhCCCCCCEEECCCCCCcCeeCCC-----------------------CCccccCEEECCCCCccccccc--
Confidence 888765 4789999999999999998877621 2578999999999988876543
Q ss_pred CccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCc
Q 007039 461 FQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLS 540 (620)
Q Consensus 461 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~ 540 (620)
..++|++|++++ ..++.+ +..+..+++|+.|++.+|++++.+. .... .+++|+.+++.+|++|+
T Consensus 844 -----~~~nL~~L~Ls~-n~i~~i--P~si~~l~~L~~L~L~~C~~L~~l~--~~~~------~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 844 -----ISTNISDLNLSR-TGIEEV--PWWIEKFSNLSFLDMNGCNNLQRVS--LNIS------KLKHLETVDFSDCGALT 907 (1153)
T ss_pred -----cccccCEeECCC-CCCccC--hHHHhcCCCCCEEECCCCCCcCccC--cccc------cccCCCeeecCCCcccc
Confidence 247899999998 588877 3567899999999999999998863 2233 37889999999999998
Q ss_pred ccCCCcccccCCCCccccc-cccccCCCccEEEeccccchhhh
Q 007039 541 SFASPEDVIHTEMQPQSLF-DEKVRLPSLEVLHISEADKLRKI 582 (620)
Q Consensus 541 ~~~~~~~~~~~~~~l~~l~-~~~~~l~~L~~L~i~~C~~L~~l 582 (620)
.++...... ....+. .....+++...+.+.+|.+|..-
T Consensus 908 ~~~l~~~~~----~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~ 946 (1153)
T PLN03210 908 EASWNGSPS----EVAMATDNIHSKLPSTVCINFINCFNLDQE 946 (1153)
T ss_pred cccCCCCch----hhhhhcccccccCCchhccccccccCCCch
Confidence 764321000 000000 01123456667788888877653
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-24 Score=214.53 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=271.4
Q ss_pred cccCCcEEEEccCCCCcCCCCcC----CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccC
Q 007039 34 TIQKDPIAISLPHRDIQELPERL----QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLIN 109 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~~----~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~ 109 (620)
......+-++.+++.++.+.... -.+.-++|++++|.. .++....|.++++|+.+++.+|.+..+|...+..-|
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl--~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sgh 126 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL--SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGH 126 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeecccccc--ccCcHHHHhcCCcceeeeeccchhhhcccccccccc
Confidence 45777788888888886653221 335667799998887 555555578899999999999999899987777788
Q ss_pred CcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 110 LQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 110 L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
|+.|+|.+|.|++ -+.+..+..||.|||+.|.|+++|.. +..-.++++|++++|. ++.+..+.|..+.+|-+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecc
Confidence 9999999998887 47888889999999999988877653 5555788999999887 777776668888889999998
Q ss_pred CCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 187 NGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
+|.++.. .+..++++++|+.|++..|.+..+.... +..+++++.|.+..
T Consensus 206 rNrittL--------p~r~Fk~L~~L~~LdLnrN~irive~lt-----------------------FqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 206 RNRITTL--------PQRSFKRLPKLESLDLNRNRIRIVEGLT-----------------------FQGLPSLQNLKLQR 254 (873)
T ss_pred cCccccc--------CHHHhhhcchhhhhhccccceeeehhhh-----------------------hcCchhhhhhhhhh
Confidence 8888733 3367778888888888877543221111 33444455555544
Q ss_pred ccccccccc-hhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 267 IKKVSILQE-NDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 267 ~~~~~~i~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.+|.. .+|+...+.++++|++....-..--..+ +-+++.|+.|+++.+. ++.+-. ......++|++|
T Consensus 255 ----N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~---lfgLt~L~~L~lS~Na-I~rih~----d~WsftqkL~~L 322 (873)
T KOG4194|consen 255 ----NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW---LFGLTSLEQLDLSYNA-IQRIHI----DSWSFTQKLKEL 322 (873)
T ss_pred ----cCcccccCcceeeecccceeecccchhhhhhccc---ccccchhhhhccchhh-hheeec----chhhhcccceeE
Confidence 33322 3444444566777776543322111122 3378889999998874 222211 144567888999
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCcccc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFI 425 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~ 425 (620)
++++ ..++.++.+. ...+..|++|.+.+ +++.++.. +.+..+.+|++|++++. .+.....+
T Consensus 323 dLs~-N~i~~l~~~s---f~~L~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N-~ls~~IED------------ 383 (873)
T KOG4194|consen 323 DLSS-NRITRLDEGS---FRVLSQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSN-ELSWCIED------------ 383 (873)
T ss_pred eccc-cccccCChhH---HHHHHHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCC-eEEEEEec------------
Confidence 8887 5577666554 45678888888887 56776643 45678889999988873 33322211
Q ss_pred ccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcc
Q 007039 426 EINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRN 503 (620)
Q Consensus 426 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 503 (620)
....+..+++|++|.+.++ ++++++...+. .+.+|+.|++.+ +.+.++ .+..+..+ .|++|.+..
T Consensus 384 ------aa~~f~gl~~LrkL~l~gN-qlk~I~krAfs---gl~~LE~LdL~~-NaiaSI-q~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 384 ------AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS---GLEALEHLDLGD-NAIASI-QPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ------chhhhccchhhhheeecCc-eeeecchhhhc---cCcccceecCCC-Ccceee-cccccccc-hhhhhhhcc
Confidence 1234556899999999987 88888877766 788999999988 677777 44556666 788776544
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=3.7e-23 Score=226.52 Aligned_cols=372 Identities=26% Similarity=0.369 Sum_probs=217.1
Q ss_pred CchhHHHHHHHhhc-----cCCeeEecCccchhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcc
Q 007039 1 MHDVIHVVAVSIAT-----EERMFNVPNVADLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQ 75 (620)
Q Consensus 1 mHdl~~dla~~~s~-----~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~ 75 (620)
|||+|||||.++|+ +++++ +..+.+....+....+..+|+.++.++.+..++...+++.|++|.+.+|..-...
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~i-v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQI-VSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eeHHHHHHHHHHhccccccccceE-EECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 89999999999999 67655 4433344445555567889999999999999988888899999999988621266
Q ss_pred cchHHHhcCCCCcEEEcCCCC-CCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCC
Q 007039 76 VSDHFFEGMEGLKVLQFPGIG-SSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTR 154 (620)
Q Consensus 76 ~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~ 154 (620)
++..+|..+++||+||+++|. +..+|+.++++.|||||+++++ .+..+|.++++|.+
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT----------------------GISHLPSGLGNLKK 619 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC----------------------CccccchHHHHHHh
Confidence 777778889999999999764 4567766665555555555555 45555555555555
Q ss_pred CCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCc
Q 007039 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVEL 234 (620)
Q Consensus 155 L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L 234 (620)
|++|++..+.....+|. ....+++||+|.+...... .+...+.++.++++|+.+.+...+. .+-..+.
T Consensus 620 L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~------~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~---- 687 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS------NDKLLLKELENLEHLENLSITISSV-LLLEDLL---- 687 (889)
T ss_pred hheeccccccccccccc-hhhhcccccEEEeeccccc------cchhhHHhhhcccchhhheeecchh-HhHhhhh----
Confidence 55555555543333333 2444666666665444311 1334456666666666666643221 1000000
Q ss_pred eEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccc
Q 007039 235 QRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLK 314 (620)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~ 314 (620)
++.......+.+.+.++..... ......+.+|+
T Consensus 688 -------------------------------------------~~~~L~~~~~~l~~~~~~~~~~----~~~~~~l~~L~ 720 (889)
T KOG4658|consen 688 -------------------------------------------GMTRLRSLLQSLSIEGCSKRTL----ISSLGSLGNLE 720 (889)
T ss_pred -------------------------------------------hhHHHHHHhHhhhhccccccee----ecccccccCcc
Confidence 0000001111222211111111 11245788999
Q ss_pred eEEeccCCCceEeeecccccccc-cccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHh
Q 007039 315 RLLVTDCSEILHIVGSVRRVRCE-VFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNL 393 (620)
Q Consensus 315 ~L~l~~~~~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l 393 (620)
.|.|.+|...+............ .|+++..+.+.+|..+++..+. .-.|+|+.|.+..|+.+++..+. .+.+
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~~~~~e~~i~~--~k~~ 793 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVSCRLLEDIIPK--LKAL 793 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh-----hccCcccEEEEecccccccCCCH--HHHh
Confidence 99999887543221100001122 3777888888887776665443 23577888888887777765442 3444
Q ss_pred cccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceE-ecCCccccccccccCCccccccCCccE
Q 007039 394 LRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEEL-ELVSLTNIKKLWSDQFQGIYCCQNLTK 472 (620)
Q Consensus 394 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L-~l~~~~~l~~l~~~~~~~~~~l~~L~~ 472 (620)
..++++.+ .|.++..+ .+.+.+.+.++.....+ ++.|+.
T Consensus 794 ~~l~~~i~------------------------------------~f~~~~~l~~~~~l~~l~~i~~~~l~----~~~l~~ 833 (889)
T KOG4658|consen 794 LELKELIL------------------------------------PFNKLEGLRMLCSLGGLPQLYWLPLS----FLKLEE 833 (889)
T ss_pred hhcccEEe------------------------------------cccccccceeeecCCCCceeEecccC----ccchhh
Confidence 44444211 13333333 34444444444333333 445888
Q ss_pred EEEecCCCcceecchhhhcccCcccEEEEccc-cccccc
Q 007039 473 VTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNC-RSIEGV 510 (620)
Q Consensus 473 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C-~~l~~~ 510 (620)
+.+..||++..+ |.+.++.|.+| +.+...
T Consensus 834 ~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 834 LIVEECPKLGKL---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred eehhcCcccccC---------ccccccceeccccceeec
Confidence 888888887765 67777788886 555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.7e-24 Score=213.32 Aligned_cols=370 Identities=20% Similarity=0.210 Sum_probs=216.0
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEec
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 137 (620)
+-.|-+++++|++.-+.+|.++ ..+..++.|.+..+++..+|+.++.|.+|+.|.+.+|++.. -..+..|+.||.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 4455566666666335566665 67777777777777777778777777777777777777666 466777777777777
Q ss_pred CCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEE
Q 007039 138 AYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTL 215 (620)
Q Consensus 138 ~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 215 (620)
+.|.++ .+|..|.++..|..||+++|+ +.+.|.+ +..-.++-.|+++.|.+...+. .-+-++..|-.|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~IetIPn--------~lfinLtDLLfL 155 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIETIPN--------SLFINLTDLLFL 155 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCccccCCc--------hHHHhhHhHhhh
Confidence 777665 677777777777777877777 7777776 6777777777777776642111 234466666667
Q ss_pred EeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceeccccc
Q 007039 216 EIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLE 295 (620)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~ 295 (620)
+++.|..+.+|+.+- .+..|+.|.|++ .+
T Consensus 156 DLS~NrLe~LPPQ~R------------------------RL~~LqtL~Ls~---------------------------NP 184 (1255)
T KOG0444|consen 156 DLSNNRLEMLPPQIR------------------------RLSMLQTLKLSN---------------------------NP 184 (1255)
T ss_pred ccccchhhhcCHHHH------------------------HHhhhhhhhcCC---------------------------Ch
Confidence 777666665554321 122222222222 11
Q ss_pred ChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEe
Q 007039 296 GVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINV 375 (620)
Q Consensus 296 ~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 375 (620)
....- +..+..+++|+.|.+++.... +..+|.. ...+.+|+.+++
T Consensus 185 L~hfQ---LrQLPsmtsL~vLhms~TqRT----------------------------l~N~Pts----ld~l~NL~dvDl 229 (1255)
T KOG0444|consen 185 LNHFQ---LRQLPSMTSLSVLHMSNTQRT----------------------------LDNIPTS----LDDLHNLRDVDL 229 (1255)
T ss_pred hhHHH---HhcCccchhhhhhhcccccch----------------------------hhcCCCc----hhhhhhhhhccc
Confidence 10000 000113334444444443211 0011111 233444444444
Q ss_pred ecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCcccccc
Q 007039 376 DSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKK 455 (620)
Q Consensus 376 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 455 (620)
+. +++..+|.. +..+++|+.|++++ ++++.+. .....+.+|++|.++.+ .++.
T Consensus 230 S~-N~Lp~vPec--ly~l~~LrrLNLS~-N~iteL~----------------------~~~~~W~~lEtLNlSrN-QLt~ 282 (1255)
T KOG0444|consen 230 SE-NNLPIVPEC--LYKLRNLRRLNLSG-NKITELN----------------------MTEGEWENLETLNLSRN-QLTV 282 (1255)
T ss_pred cc-cCCCcchHH--HhhhhhhheeccCc-Cceeeee----------------------ccHHHHhhhhhhccccc-hhcc
Confidence 32 444444432 44566666666655 3333333 12234556666666665 5555
Q ss_pred ccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceecccc
Q 007039 456 LWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHW 535 (620)
Q Consensus 456 l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 535 (620)
++... ..++.|++|...+ ++|+.-..+++++.+..|+.+...+ +.|+-+ |++++. ++.|+.|.++
T Consensus 283 LP~av----cKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aan-N~LElV--PEglcR------C~kL~kL~L~- 347 (1255)
T KOG0444|consen 283 LPDAV----CKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELV--PEGLCR------CVKLQKLKLD- 347 (1255)
T ss_pred chHHH----hhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhc-cccccC--chhhhh------hHHHHHhccc-
Confidence 54332 3466666666666 5666555566677777777766665 455544 555554 5566666554
Q ss_pred CCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhc
Q 007039 536 LPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIW 583 (620)
Q Consensus 536 ~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~ 583 (620)
++.+-+||+.+..++.|+.|++.+.|+|..-|
T Consensus 348 ----------------~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 348 ----------------HNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ----------------ccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 34556678888888888888888888888743
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=1.9e-25 Score=210.65 Aligned_cols=262 Identities=24% Similarity=0.231 Sum_probs=206.7
Q ss_pred CCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 37 KDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 37 ~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+..+.+++|.+..+.+.. ++..+.+|.+.+|.. ..+|+++ +.+..++.++.+.|++..+|+.++.+..|+.++.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l--~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL--SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchh--hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 34677889999997776555 889999999999987 7888887 7899999999999999999999999999999999
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
+++.+.+ +++|+.+..|..++...|.+.++|.+++++.+|..+++.++. +.+.|+..+. ++.|++++...|...
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh---
Confidence 9999888 899999999999999999999999999999999999999988 8888888555 999999998887665
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
..+.+++.+.+|.-|++..|....+|+.-.++.|++|.+........ .......++++..|+++. ..+.
T Consensus 197 ------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~l-pae~~~~L~~l~vLDLRd----Nklk 265 (565)
T KOG0472|consen 197 ------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEML-PAEHLKHLNSLLVLDLRD----NKLK 265 (565)
T ss_pred ------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhh-HHHHhcccccceeeeccc----cccc
Confidence 46678999999999999999988888433337788887754431110 001244778888899988 4444
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCC
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCS 322 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~ 322 (620)
..+.-.-.+.+|.+|++++..-. .... .++++ +|+.|.+.|++
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is-~Lp~---sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDIS-SLPY---SLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccc-cCCc---ccccc-eeeehhhcCCc
Confidence 43222234688999999865422 2212 25577 89999998886
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5.1e-24 Score=201.07 Aligned_cols=443 Identities=19% Similarity=0.213 Sum_probs=280.9
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEec
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSL 137 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l 137 (620)
.-+..++++.|.. ..+...+ .++..+.+|++..|...++|.+++.+..+..++.+++.+.. |+.++.+..|+.++.
T Consensus 45 v~l~~lils~N~l--~~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDL--EVLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCch--hhccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 4566777777766 4444443 67788888888888888888888888888888888888777 778888888888888
Q ss_pred CCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEe
Q 007039 138 AYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEI 217 (620)
Q Consensus 138 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 217 (620)
+++.+.++|.+|+.+-.|..++..+|+ +..+|.+ +..+.+|..+++.++... +.+++.-+++.|++++.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~---------~l~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK---------ALPENHIAMKRLKHLDC 190 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh---------hCCHHHHHHHHHHhccc
Confidence 888888888888888888888887777 7777776 677777777877777665 34455555777888887
Q ss_pred ecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHHhccccceecccccC
Q 007039 218 EVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEG 296 (620)
Q Consensus 218 ~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 296 (620)
..|-.+.+|+++.. .+|+.| +++...
T Consensus 191 ~~N~L~tlP~~lg~l~~L~~L----------------------------------------------------yL~~Nk- 217 (565)
T KOG0472|consen 191 NSNLLETLPPELGGLESLELL----------------------------------------------------YLRRNK- 217 (565)
T ss_pred chhhhhcCChhhcchhhhHHH----------------------------------------------------Hhhhcc-
Confidence 77777777766333 222222 222111
Q ss_pred hhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEee
Q 007039 297 VQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVD 376 (620)
Q Consensus 297 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 376 (620)
+ ..++.++++..|++|++..+. ++-++.+ ....++++..|++.+ .+++++|.+. --+.+|.+|+++
T Consensus 218 i----~~lPef~gcs~L~Elh~g~N~-i~~lpae----~~~~L~~l~vLDLRd-Nklke~Pde~----clLrsL~rLDlS 283 (565)
T KOG0472|consen 218 I----RFLPEFPGCSLLKELHVGENQ-IEMLPAE----HLKHLNSLLVLDLRD-NKLKEVPDEI----CLLRSLERLDLS 283 (565)
T ss_pred c----ccCCCCCccHHHHHHHhcccH-HHhhHHH----Hhcccccceeeeccc-cccccCchHH----HHhhhhhhhccc
Confidence 1 122335578888888887663 2222111 344778888888888 6688887663 347789999998
Q ss_pred cCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCC-----ccccccccCCC-------------C---cc
Q 007039 377 SCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTT-----QGFIEINAEDD-------------P---VH 435 (620)
Q Consensus 377 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l-----~~~~~~~~~~~-------------~---~~ 435 (620)
+ +.++.+|+. ++++ .|+.|.+.+.+ +.++.-+- -..+.. .+....|++.. . ..
T Consensus 284 N-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~i-i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 284 N-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREI-ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred C-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHH-HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 7 577777663 5677 88888888854 33332110 000000 00111111110 0 11
Q ss_pred ccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceec----------------------chhhhccc
Q 007039 436 QVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLF----------------------SYSMVNSL 493 (620)
Q Consensus 436 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~----------------------~~~~~~~l 493 (620)
....-+.+.|++++- +++.++...+.... -.-...+++++ +++..++ ++..+..+
T Consensus 358 ~~~~i~tkiL~~s~~-qlt~VPdEVfea~~-~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 358 IYAIITTKILDVSDK-QLTLVPDEVFEAAK-SEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred hhhhhhhhhhccccc-ccccCCHHHHHHhh-hcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 223445777777765 56666544322110 00122333333 2222221 24556777
Q ss_pred CcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCCcc-------cccCCCCccccccc-cccC
Q 007039 494 GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPED-------VIHTEMQPQSLFDE-KVRL 565 (620)
Q Consensus 494 ~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~-------~~~~~~~l~~l~~~-~~~l 565 (620)
+.|..|++++ +-+.++ |.+++. +.+|+.|+|++- ...-++.|.. .++..+++.++++. ++.+
T Consensus 435 ~kLt~L~L~N-N~Ln~L--P~e~~~------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 435 QKLTFLDLSN-NLLNDL--PEEMGS------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred hcceeeeccc-chhhhc--chhhhh------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 8888888887 445555 444443 567888888765 2222222211 12456788888887 8999
Q ss_pred CCccEEEeccccchhhhccccccCCcccCccEEEeccCcC
Q 007039 566 PSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNN 605 (620)
Q Consensus 566 ~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 605 (620)
.+|.+|++.+. .|+.+|+. ++++++|++|+++|.|-
T Consensus 505 ~nL~tLDL~nN-dlq~IPp~---LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 505 RNLTTLDLQNN-DLQQIPPI---LGNMTNLRHLELDGNPF 540 (565)
T ss_pred hhcceeccCCC-chhhCChh---hccccceeEEEecCCcc
Confidence 99999999998 79999887 57899999999999874
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=4.5e-24 Score=211.78 Aligned_cols=220 Identities=18% Similarity=0.189 Sum_probs=146.0
Q ss_pred cccCCcEEEEccCCCC--cCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDI--QELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~--~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 110 (620)
+.++-+|.+++++|.+ ..+|... .+.+++-|.+..... ..+|..+ +.+.+|..|.+..|++..+-..+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L--~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL--EQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh--hhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence 3456677888888877 3566666 777777777776655 6677765 67777777777777777666667777777
Q ss_pred cEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
|.++++.|++.. |..|.+|..|.+||+++|.+.+.|..+..-+++-.|++++|+ ++.+|...+.+++.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 777777777653 677777778888888887777777777777777778887777 7777777777777777777777
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
|... ..+..+..+.+|++|.+++|....+.---.. ++|+.|.+++.+-.....++.+..+.+|+.++++
T Consensus 160 NrLe---------~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 160 NRLE---------MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred chhh---------hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 7654 3445666777777777777764433221111 4444444443332222222234555555555555
Q ss_pred c
Q 007039 266 G 266 (620)
Q Consensus 266 ~ 266 (620)
.
T Consensus 231 ~ 231 (1255)
T KOG0444|consen 231 E 231 (1255)
T ss_pred c
Confidence 4
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.7e-22 Score=196.96 Aligned_cols=362 Identities=17% Similarity=0.180 Sum_probs=239.7
Q ss_pred cccCCcEEEEccCCCCcCCCCc--CCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCC
Q 007039 34 TIQKDPIAISLPHRDIQELPER--LQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINL 110 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L 110 (620)
..+...+.|++++|.+.++... .++++|+.+.+..|.. ..+|... ...-||+.|+|..|.|.++. +.+.-++.|
T Consensus 75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhccccc-ccccceeEEeeeccccccccHHHHHhHhhh
Confidence 4577789999999999776544 3999999999999987 8888743 56678999999999998874 678889999
Q ss_pred cEEEccCCCCCC-h-hhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCC
Q 007039 111 QTLCLDWCELAD-I-AAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGN 187 (620)
Q Consensus 111 ~~L~L~~~~~~~-~-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~ 187 (620)
|+|||+.|.+.+ + +.|.+=.++++|+|++|.|+.+-. .+..+.+|-.|.+++|. +..+|...|.++++|+.|++.+
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccc
Confidence 999999999988 4 677788899999999999997754 47888899999999988 8999998899999999999999
Q ss_pred CccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEe
Q 007039 188 GFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLK 265 (620)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 265 (620)
|.+. ....-.+++++.|+.|.+..|+...+....+. .++++|++..+....... .-+..+..|+.|+++
T Consensus 231 N~ir--------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 231 NRIR--------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLS 301 (873)
T ss_pred ccee--------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-ccccccchhhhhccc
Confidence 9875 22346788999999999999998888877665 888888886554221100 004455556666665
Q ss_pred cccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchh
Q 007039 266 GIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEAL 345 (620)
Q Consensus 266 ~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L 345 (620)
.+. +..|..+.| + -.+.|++|+++.+. ++.+.. .....+..|++|
T Consensus 302 ~Na-I~rih~d~W------------------------s-----ftqkL~~LdLs~N~-i~~l~~----~sf~~L~~Le~L 346 (873)
T KOG4194|consen 302 YNA-IQRIHIDSW------------------------S-----FTQKLKELDLSSNR-ITRLDE----GSFRVLSQLEEL 346 (873)
T ss_pred hhh-hheeecchh------------------------h-----hcccceeEeccccc-cccCCh----hHHHHHHHhhhh
Confidence 511 011111111 1 23566666666552 222211 133445556666
Q ss_pred ccccccCchhhhccCCCCCCcCCCCcEEEeecCCCcee-ec-chhHHHHhcccceEEEEecCCcccccccCCCCCCCCcc
Q 007039 346 SLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKY-LF-SFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQG 423 (620)
Q Consensus 346 ~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~ 423 (620)
.+++ ..+..+..+. +..+++|++|++++. .+.- +. ....+..+++|+.|.+.+ +++++++.
T Consensus 347 nLs~-Nsi~~l~e~a---f~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k----------- 409 (873)
T KOG4194|consen 347 NLSH-NSIDHLAEGA---FVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK----------- 409 (873)
T ss_pred cccc-cchHHHHhhH---HHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecch-----------
Confidence 6655 2344433332 334556666665542 1111 00 111234466666666665 44555542
Q ss_pred ccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEE
Q 007039 424 FIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTV 475 (620)
Q Consensus 424 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i 475 (620)
-.+..+++|++|++.++ .+.++....+. .+ .|++|.+
T Consensus 410 ----------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe---~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 410 ----------RAFSGLEALEHLDLGDN-AIASIQPNAFE---PM-ELKELVM 446 (873)
T ss_pred ----------hhhccCcccceecCCCC-cceeecccccc---cc-hhhhhhh
Confidence 12344666666666665 45555444443 23 5555543
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-23 Score=217.27 Aligned_cols=461 Identities=20% Similarity=0.207 Sum_probs=242.4
Q ss_pred cEEEEccCCCCcCCCC--cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEcc
Q 007039 39 PIAISLPHRDIQELPE--RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLD 116 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 116 (620)
+.++++..|.+-..|- .-+.-+|++|+++.|.. ..+|..+ ..+.+|+.|+++.|.+..+|.+.+++.+|++++|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 5666666666544331 11444588888888877 6666665 56788888888888888888888888888888888
Q ss_pred CCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccc
Q 007039 117 WCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKV 195 (620)
Q Consensus 117 ~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~ 195 (620)
++.... |.++..+++|++|++++|.+..+|..+..++.+..+..++|..+..++. .. .+++++..+...
T Consensus 100 ~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~---- 169 (1081)
T KOG0618|consen 100 NNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG---- 169 (1081)
T ss_pred cchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc----
Confidence 888766 7888888888888888888888888888888888888888743333332 22 555555555443
Q ss_pred cCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEeccccccccc
Q 007039 196 EGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQ 274 (620)
Q Consensus 196 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~ 274 (620)
...+.++..++. .|++..|... ..++.. .+|+.+.......... ....++++.|....++-.+..
T Consensus 170 ----~~~~~~i~~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~- 235 (1081)
T KOG0618|consen 170 ----GSFLIDIYNLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLD- 235 (1081)
T ss_pred ----cchhcchhhhhe--eeecccchhh--hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeec-
Confidence 223344455444 5677666544 111111 3444443321111111 112233333433332211000
Q ss_pred chhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCch
Q 007039 275 ENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLE 354 (620)
Q Consensus 275 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 354 (620)
... ...++++++++..... .+.++ .+.+++|+.+++.++.- ..++ .......+|+.|.+..+. ++
T Consensus 236 -~~p---~p~nl~~~dis~n~l~-~lp~w---i~~~~nle~l~~n~N~l-~~lp-----~ri~~~~~L~~l~~~~ne-l~ 300 (1081)
T KOG0618|consen 236 -VHP---VPLNLQYLDISHNNLS-NLPEW---IGACANLEALNANHNRL-VALP-----LRISRITSLVSLSAAYNE-LE 300 (1081)
T ss_pred -ccc---ccccceeeecchhhhh-cchHH---HHhcccceEecccchhH-HhhH-----HHHhhhhhHHHHHhhhhh-hh
Confidence 000 1134455554432221 11122 12455555555544421 1111 022233445555554432 33
Q ss_pred hhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcc-cceEEEEecCCcccccccCCCCCCCCccccccccCCCC
Q 007039 355 TICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLR-LQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDP 433 (620)
Q Consensus 355 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (620)
.++.. ...+.+|+.|++.. +++.++|.. .+.-... |..++.+. ..++..+ .
T Consensus 301 yip~~----le~~~sL~tLdL~~-N~L~~lp~~-~l~v~~~~l~~ln~s~-n~l~~lp---------------------~ 352 (1081)
T KOG0618|consen 301 YIPPF----LEGLKSLRTLDLQS-NNLPSLPDN-FLAVLNASLNTLNVSS-NKLSTLP---------------------S 352 (1081)
T ss_pred hCCCc----ccccceeeeeeehh-ccccccchH-HHhhhhHHHHHHhhhh-ccccccc---------------------c
Confidence 33332 23356666666655 345554431 1121111 33333322 2222222 1
Q ss_pred ccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccc
Q 007039 434 VHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNT 513 (620)
Q Consensus 434 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~ 513 (620)
.....++.|+.|++.++ .+. ..-++.+.++..||.|+++. +.|.++ |.+.+.++..|++|+++| ++|+.++
T Consensus 353 ~~e~~~~~Lq~LylanN-~Lt---d~c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSG-NkL~~Lp-- 423 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANN-HLT---DSCFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSG-NKLTTLP-- 423 (1081)
T ss_pred ccchhhHHHHHHHHhcC-ccc---ccchhhhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhccc-chhhhhh--
Confidence 22345666777777766 232 22233445677777777777 667665 456677777777777777 6676653
Q ss_pred cccCCccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCccc
Q 007039 514 TTLGGRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFS 593 (620)
Q Consensus 514 ~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~ 593 (620)
+.... +++|+.|... .+.+.++| ++..++.|+.++++ |-+|+.+...... --|
T Consensus 424 ~tva~------~~~L~tL~ah-----------------sN~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~--p~p 476 (1081)
T KOG0618|consen 424 DTVAN------LGRLHTLRAH-----------------SNQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEAL--PSP 476 (1081)
T ss_pred HHHHh------hhhhHHHhhc-----------------CCceeech-hhhhcCcceEEecc-cchhhhhhhhhhC--CCc
Confidence 22222 3333333332 24455555 56666677777766 3356654222110 115
Q ss_pred CccEEEeccCcC
Q 007039 594 KLKKLKISGCNN 605 (620)
Q Consensus 594 sL~~L~i~~C~~ 605 (620)
.||+|++.|.+.
T Consensus 477 ~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 477 NLKYLDLSGNTR 488 (1081)
T ss_pred ccceeeccCCcc
Confidence 667777666653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-21 Score=202.94 Aligned_cols=416 Identities=21% Similarity=0.201 Sum_probs=250.8
Q ss_pred cEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 39 PIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
+.+|++++|.+..+|... .+++|+.|.++.|.+ ..+|.+. .++++|++++|.+|....+|.++..+++|++|++++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i--~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI--RSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhH--hhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 889999999999998766 899999999999998 7788664 899999999999999999999999999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCC-CCCCC-------------------ChhccCCCCCCEEeCCCCccccccchHHHhC
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYS-NINQL-------------------PVEIGQLTRLQLLDLSNCWWLEVIAPNVISK 176 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~-~l~~l-------------------p~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~ 176 (620)
|.+.. |.-+..+..+..++.++| .+..+ +.++..+++ .|++++|. +. +-. +..
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~-~~d--ls~ 197 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-ME-VLD--LSN 197 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccch-hh-hhh--hhh
Confidence 99887 777777777777777776 33333 333333333 35555544 22 111 344
Q ss_pred CcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeCC---CCCCCCCccc
Q 007039 177 LSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIGD---GPEDEFDPLL 253 (620)
Q Consensus 177 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~ 253 (620)
+.+|+.+....+.... ---..++|+.|....|.....-......+++++.++... .++| +
T Consensus 198 ~~~l~~l~c~rn~ls~------------l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w-----i 260 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSE------------LEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW-----I 260 (1081)
T ss_pred ccchhhhhhhhcccce------------EEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH-----H
Confidence 5555555544443320 001223455555555555433333233667777775443 4556 6
Q ss_pred cccccccEEEEecccccccccchhHHHHHhccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccc
Q 007039 254 VKSEASRLMMLKGIKKVSILQENDGTKMLLQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRR 333 (620)
Q Consensus 254 ~~~~~L~~L~l~~~~~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 333 (620)
..+.++..+.... +.+.....-.....+|+.|.+..+. ++.+... ++++.+|++|++..+. +..+++.
T Consensus 261 ~~~~nle~l~~n~----N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~---le~~~sL~tLdL~~N~-L~~lp~~--- 328 (1081)
T KOG0618|consen 261 GACANLEALNANH----NRLVALPLRISRITSLVSLSAAYNE-LEYIPPF---LEGLKSLRTLDLQSNN-LPSLPDN--- 328 (1081)
T ss_pred HhcccceEecccc----hhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCc---ccccceeeeeeehhcc-ccccchH---
Confidence 6667777776665 3332222222234556666655433 2222221 3468889999988773 3333221
Q ss_pred ccccccc-ccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccc
Q 007039 334 VRCEVFP-LLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIG 412 (620)
Q Consensus 334 ~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 412 (620)
.....+ .|+.|..+. ..+...+.. +...++.|+.|++.+ +.+++- .+..+.+++.|+.|++++ +.+.+.+.
T Consensus 329 -~l~v~~~~l~~ln~s~-n~l~~lp~~---~e~~~~~Lq~Lylan-N~Ltd~-c~p~l~~~~hLKVLhLsy-NrL~~fpa 400 (1081)
T KOG0618|consen 329 -FLAVLNASLNTLNVSS-NKLSTLPSY---EENNHAALQELYLAN-NHLTDS-CFPVLVNFKHLKVLHLSY-NRLNSFPA 400 (1081)
T ss_pred -HHhhhhHHHHHHhhhh-ccccccccc---cchhhHHHHHHHHhc-Cccccc-chhhhccccceeeeeecc-cccccCCH
Confidence 111111 133333333 223332211 134566777777776 344442 223466777788777777 33433332
Q ss_pred cCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcc
Q 007039 413 PDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNS 492 (620)
Q Consensus 413 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~ 492 (620)
....+++.|++|+++++ +++.++.... .+..|++|...+ +.|... | .+..
T Consensus 401 ---------------------s~~~kle~LeeL~LSGN-kL~~Lp~tva----~~~~L~tL~ahs-N~l~~f-P--e~~~ 450 (1081)
T KOG0618|consen 401 ---------------------SKLRKLEELEELNLSGN-KLTTLPDTVA----NLGRLHTLRAHS-NQLLSF-P--ELAQ 450 (1081)
T ss_pred ---------------------HHHhchHHhHHHhcccc-hhhhhhHHHH----hhhhhHHHhhcC-Cceeec-h--hhhh
Confidence 23455677777777776 6777764433 467777776665 556555 2 4557
Q ss_pred cCcccEEEEcccccccccccccccCCccceeeccccceeccccCCC
Q 007039 493 LGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPK 538 (620)
Q Consensus 493 l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 538 (620)
+++|+.++++ |+.|..+..++... -|.|++|++++-..
T Consensus 451 l~qL~~lDlS-~N~L~~~~l~~~~p-------~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLS-CNNLSEVTLPEALP-------SPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecc-cchhhhhhhhhhCC-------CcccceeeccCCcc
Confidence 7777777776 57776654444333 15677777776654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=5.3e-18 Score=142.18 Aligned_cols=151 Identities=22% Similarity=0.337 Sum_probs=113.2
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
.+.+++|.+++|.+..+|+.. .+.+|++|.++.|.+ .++|.++ +.++.||.|+++-|++..+|..||.++.|++||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 566777777777777777666 777777777777776 6677765 677777777777777777777777777777777
Q ss_pred ccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 115 LDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 115 L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
+.+|.+.+ |..|..|..|+-|.++.|.++-+|.+++++++||.|.++.|. +-.+|.+ ++.++.|++|++.+|...
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 77777654 566777777777777777777777777777777777777776 6667776 777777777777777655
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7.7e-18 Score=141.19 Aligned_cols=170 Identities=26% Similarity=0.395 Sum_probs=153.2
Q ss_pred CCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhh
Q 007039 48 DIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAI 126 (620)
Q Consensus 48 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i 126 (620)
.+..++..+.+.++..|.++.|.. ..+|+.+ +.+++|++|++.+|+++++|.+++.+++|+.|++.-|.+.. |..|
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl--~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKL--TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cHhhcccccchhhhhhhhcccCce--eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 345667777899999999999998 7788886 89999999999999999999999999999999999999877 9999
Q ss_pred cCCCCCCEEecCCCCCC--CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchh
Q 007039 127 GQLKKLEILSLAYSNIN--QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLV 204 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 204 (620)
+.++.|++||+.+|.+. .+|..+..++.|+.|++++|. .+.+|++ ++++++||.|.+..|... ..+.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll---------~lpk 167 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL---------SLPK 167 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh---------hCcH
Confidence 99999999999999887 789999999999999999988 7889998 999999999999888765 5678
Q ss_pred hhcCCCCCCEEEeecCCCCCCCCcccc
Q 007039 205 ELERLTELTTLEIEVPDAEILPPDFVS 231 (620)
Q Consensus 205 ~l~~l~~L~~L~l~~~~~~~~~~~~~~ 231 (620)
+++.+..|++|.+.+|....+|+++..
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhhhh
Confidence 899999999999999998888877543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=7.6e-13 Score=143.67 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=108.1
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
...+...|.+.+..+..+|... .++++.|++++|.+ ..+|..+ ..+|++|++++|.++.+|..+. .+|++|+
T Consensus 176 l~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L--tsLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPACI-PEQITTLILDNNEL--KSLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred cccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC--CcCChhh---ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 3455677888887777776533 24688888888876 5677654 3578888888888887776554 3688888
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. +. .+|+.|++++|.+...
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccccC
Confidence 88888776 55443 478888888887777776554 478888888876 6666653 22 3566677766655411
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILP 226 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 226 (620)
+..+ .++|+.|+++.|....+|
T Consensus 320 ---------P~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 320 ---------PETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred ---------Cccc--cccceeccccCCccccCC
Confidence 1111 145666666665544444
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.43 E-value=2.8e-13 Score=149.31 Aligned_cols=128 Identities=21% Similarity=0.220 Sum_probs=97.1
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCC--CCC--hhhhcCCCCCCEEecCCC-CCCCCChhccCCCCCCE
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQL 157 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~--~~~--~~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~ 157 (620)
.....|.+.+.++.+..++... ++++|++|-+.++. +.. ...|..|+.|++||+++| .+..+|.+|+.|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 4456666666666666555543 33468888777775 343 356889999999999998 88999999999999999
Q ss_pred EeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 158 L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
|+++++. +..+|.+ +.++.+|.+|++..+.... ........+.+|++|.+....
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l~--------~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRLE--------SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheeccccccccc--------cccchhhhcccccEEEeeccc
Confidence 9999987 8999998 9999999999998765431 112344458888888887543
No 18
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.43 E-value=2.8e-15 Score=143.43 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=106.8
Q ss_pred ccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC
Q 007039 438 TFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG 517 (620)
Q Consensus 438 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~ 517 (620)
.+..|+.|+.++|..+.......+. .++++|+.|.+.+|..+++........+.+.|+.+++.+|-...+-....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s--- 366 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS--- 366 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh---
Confidence 3567788888888776554333222 45789999999999988887655556688899999999987665431111
Q ss_pred CccceeeccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccE
Q 007039 518 GRDEFKVFPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKK 597 (620)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~ 597 (620)
.....|.|+.|.+++|..+++-. ...+.........|+.+.+++||.+++-....+ ..+++|+.
T Consensus 367 ---ls~~C~~lr~lslshce~itD~g-----------i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l--~~c~~Ler 430 (483)
T KOG4341|consen 367 ---LSRNCPRLRVLSLSHCELITDEG-----------IRHLSSSSCSLEGLEVLELDNCPLITDATLEHL--SICRNLER 430 (483)
T ss_pred ---hccCCchhccCChhhhhhhhhhh-----------hhhhhhccccccccceeeecCCCCchHHHHHHH--hhCcccce
Confidence 12357889999999998877742 233334445677899999999999887655554 36789999
Q ss_pred EEeccCcCccc
Q 007039 598 LKISGCNNLLN 608 (620)
Q Consensus 598 L~i~~C~~l~~ 608 (620)
+++++|..+.+
T Consensus 431 i~l~~~q~vtk 441 (483)
T KOG4341|consen 431 IELIDCQDVTK 441 (483)
T ss_pred eeeechhhhhh
Confidence 99999987754
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=2.1e-12 Score=139.38 Aligned_cols=172 Identities=19% Similarity=0.129 Sum_probs=88.8
Q ss_pred ccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 35 IQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
++.+++.|++.+|.+..+|.. .++|++|++++|.+ ..+|. ..++|+.|++++|.+..+|..+ .+|+.|+
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccC----cccccceeeccCCchhhhhhch---hhcCEEE
Confidence 344566666666666655542 35666666666655 34442 1345666666666665555422 3455666
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |. .+++|++|++++|.++.+|... .+|+.|++++|. +..+|. + ..+|+.|++++|.+...
T Consensus 289 Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~--l--p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 289 IFGNQLTSLPV---LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPT--L--PSGLQELSVSDNQLASL 357 (788)
T ss_pred CcCCccccccc---cccccceeECCCCccccCCCCc---ccccccccccCc-cccccc--c--ccccceEecCCCccCCC
Confidence 66666555 32 1345666666666666555422 245555566655 445553 1 13566666666655411
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeC
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG 242 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 242 (620)
..+ ..+|+.|++++|....+|.. ..+|+.|++..+
T Consensus 358 ----------P~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N 392 (788)
T PRK15387 358 ----------PTL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN 392 (788)
T ss_pred ----------CCC--CcccceehhhccccccCccc--ccccceEEecCC
Confidence 000 13455555555555544432 134555555443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=2.3e-12 Score=139.93 Aligned_cols=188 Identities=17% Similarity=0.241 Sum_probs=144.8
Q ss_pred chhhhhhccccCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhh
Q 007039 26 DLEKKMEETIQKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLG 105 (620)
Q Consensus 26 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~ 105 (620)
+...+|. .+++.++.|++++|.+..+|... .++|++|++++|.+ ..+|..+ ...|+.|++++|.+..+|..+.
T Consensus 189 ~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 189 GLTTIPA-CIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITELPERLP 261 (754)
T ss_pred CcCcCCc-ccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCcCChhHh
Confidence 3444443 45788999999999999888654 36999999999987 6788765 3579999999999999998775
Q ss_pred cccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEE
Q 007039 106 RLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELY 184 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~ 184 (620)
.+|++|++++|.+.. |..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. + .++|+.|+
T Consensus 262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~ 331 (754)
T PRK15370 262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLE 331 (754)
T ss_pred --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceecc
Confidence 589999999999887 65554 589999999999999987654 579999999988 7778764 2 36899999
Q ss_pred cCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEEeC
Q 007039 185 MGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIRIG 242 (620)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 242 (620)
+.+|.+.. .+..+ .++|+.|++++|....+|..+ .+.|+.|++..+
T Consensus 332 Ls~N~Lt~---------LP~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N 377 (754)
T PRK15370 332 AGENALTS---------LPASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRN 377 (754)
T ss_pred ccCCcccc---------CChhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCC
Confidence 99987762 12222 268999999999877666542 245666655433
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=1.1e-11 Score=133.79 Aligned_cols=170 Identities=21% Similarity=0.173 Sum_probs=116.7
Q ss_pred cCCcEEEEccCCCCcCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEc
Q 007039 36 QKDPIAISLPHRDIQELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCL 115 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 115 (620)
..+-..|+++.+.+..+|.... ++|+.|.+.+|.+ ..+|. ..+.|++|++++|+++.+|.. .++|++|++
T Consensus 200 ~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~L--t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~L 269 (788)
T PRK15387 200 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNL--TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSI 269 (788)
T ss_pred cCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcC--CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeec
Confidence 3445678888888888776542 4788888888877 55664 257888888888888888753 357888888
Q ss_pred cCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccc
Q 007039 116 DWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEK 194 (620)
Q Consensus 116 ~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~ 194 (620)
++|.+.. |.. ..+|+.|++++|.++.+|.. .++|+.|++++|+ +..+|.. ..+|+.|++.+|.+..
T Consensus 270 s~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l----p~~L~~L~Ls~N~L~~-- 336 (788)
T PRK15387 270 FSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLTS-- 336 (788)
T ss_pred cCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC----cccccccccccCcccc--
Confidence 8888776 432 35677888888888888753 4678888888886 6666642 2357777787776651
Q ss_pred ccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccccCceEEEEE
Q 007039 195 VEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVSVELQRYKIR 240 (620)
Q Consensus 195 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 240 (620)
+..+ ..+|+.|++++|.+..+|.. ..+|+.|.+.
T Consensus 337 --------LP~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls 370 (788)
T PRK15387 337 --------LPTL--PSGLQELSVSDNQLASLPTL--PSELYKLWAY 370 (788)
T ss_pred --------cccc--ccccceEecCCCccCCCCCC--Ccccceehhh
Confidence 1111 14688888888877766642 2345555443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=2.6e-13 Score=129.12 Aligned_cols=265 Identities=16% Similarity=0.141 Sum_probs=171.7
Q ss_pred cCccchhhhhhccccCCcEEEEccCCCCcCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCC-CCCC
Q 007039 22 PNVADLEKKMEETIQKDPIAISLPHRDIQELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPG-IGSS 98 (620)
Q Consensus 22 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~ 98 (620)
+.+.++.++|+ +++.....|.+..|.|..+|+.. .+++||+|+++.|.+ ..|-+..|.+++.+-.|-+.+ |+|+
T Consensus 53 Cr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchh
Confidence 55677888886 78999999999999999998765 899999999999998 666666689999888888777 8899
Q ss_pred CChh-hhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCCCCEEeCCCCccc--------
Q 007039 99 SLPS-SLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWL-------- 166 (620)
Q Consensus 99 ~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~-------- 166 (620)
.+|+ .|+++..|+-|.+..|.+.- ...+..|++|..|.+..|.+..++. .+..+..++++.+..+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 9985 78899999999999998775 4788999999999999998888877 5777778887776665421
Q ss_pred ----cccchHHHhCCcCCcEEEcCCCccccccc-----------------c-CCCCcchhhhcCCCCCCEEEeecCCCCC
Q 007039 167 ----EVIAPNVISKLSQLEELYMGNGFSGWEKV-----------------E-GGSNASLVELERLTELTTLEIEVPDAEI 224 (620)
Q Consensus 167 ----~~~p~~~l~~l~~L~~L~l~~~~~~~~~~-----------------~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 224 (620)
...|.+ ++.....+-..+....+..... . .........++++++|++|++++|.+..
T Consensus 210 a~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 111111 1111111111111000000000 0 0011223446777777777877777777
Q ss_pred CCCcccc--cCceEEEEEeCCCCCCCCCccccccccccEEEEecccccccccchhHHH-HHhccccceeccccc
Q 007039 225 LPPDFVS--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTK-MLLQRTEDLWLETLE 295 (620)
Q Consensus 225 ~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~-~~l~~L~~L~l~~~~ 295 (620)
+.+..+. ..++.|.+..+...... ...+..+..|+.|+|.+ ..|+...+.. ..+..|..|.+...+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~----N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYD----NQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecC----CeeEEEecccccccceeeeeehccCc
Confidence 6666554 66777766544322111 11145666777777777 4444333322 223456666665433
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.24 E-value=3.3e-13 Score=129.50 Aligned_cols=271 Identities=18% Similarity=0.158 Sum_probs=169.0
Q ss_pred ccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHH
Q 007039 312 RLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAK 391 (620)
Q Consensus 312 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 391 (620)
.|+.|.+.||..... ...-.....+|+++.|.+.+|.++++.....+ ...+++|+.|.+..|..+++........
T Consensus 139 ~lk~LSlrG~r~v~~---sslrt~~~~CpnIehL~l~gc~~iTd~s~~sl--a~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGD---SSLRTFASNCPNIEHLALYGCKKITDSSLLSL--ARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCCc---chhhHHhhhCCchhhhhhhcceeccHHHHHHH--HHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 456666666654321 11111345666777777777776666544333 2456777777777777777664444556
Q ss_pred HhcccceEEEEecCCcccccccC-CCCCCCCcc-ccccccCCCCcc----ccccCccceEecCCccccccccccCCcccc
Q 007039 392 NLLRLQKVKVEDCDDLKMIIGPD-MEKPPTTQG-FIEINAEDDPVH----QVTFPRLEELELVSLTNIKKLWSDQFQGIY 465 (620)
Q Consensus 392 ~l~~L~~L~l~~c~~l~~~~~~~-~~~~~~l~~-~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~ 465 (620)
.+++|++++++.|+.+..-.+.. ..++..+.. ...+|.+.+... ....+-+.++++..|..++...... ...
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i~~ 291 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--IAC 291 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH--Hhh
Confidence 67777777777777766522211 001111111 112354443221 2334567778888997776543222 225
Q ss_pred ccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCCcccCCC
Q 007039 466 CCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKLSSFASP 545 (620)
Q Consensus 466 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~~~~~ 545 (620)
++..|+.|..++|..+++....+.-++.++|+.+.+.+|..+.+.-...- ....+.|+.+++..|...++-.
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------~rn~~~Le~l~~e~~~~~~d~t-- 363 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------GRNCPHLERLDLEECGLITDGT-- 363 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------hcCChhhhhhcccccceehhhh--
Confidence 68999999999999988876667778899999999999998866421111 1236688899998887766531
Q ss_pred cccccCCCCccccccccccCCCccEEEeccccchhhhcccccc--CCcccCccEEEeccCcCcccc
Q 007039 546 EDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLA--SKSFSKLKKLKISGCNNLLNI 609 (620)
Q Consensus 546 ~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~--~~~~~sL~~L~i~~C~~l~~~ 609 (620)
+-.--.+++.|+.|.++.|..+++.....+. ..+...|+.+++.+||.+++.
T Consensus 364 ------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 364 ------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred ------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 1112357899999999999888875222211 134678999999999998753
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-12 Score=122.84 Aligned_cols=305 Identities=18% Similarity=0.145 Sum_probs=188.1
Q ss_pred CCcCCCCCcc--EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh-hhhcccCCcEEEccCCCCCC--hhhhc
Q 007039 53 PERLQCPNLQ--LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS-SLGRLINLQTLCLDWCELAD--IAAIG 127 (620)
Q Consensus 53 ~~~~~~~~Lr--~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~~~~--~~~i~ 127 (620)
|.-..|+... .++.++... .++|..+ -+.-..+.|..|+|+.+|+ +|+.+++||.|||+.|.|+. |..|.
T Consensus 38 P~pC~Cs~~~g~~VdCr~~GL--~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~ 112 (498)
T KOG4237|consen 38 PAPCTCSDVEGGIVDCRGKGL--TEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK 112 (498)
T ss_pred CCCcccCCCCCceEEccCCCc--ccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh
Confidence 3333455533 344555544 6666543 3456778899999999974 88999999999999999887 78999
Q ss_pred CCCCCCEEecCC-CCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhh
Q 007039 128 QLKKLEILSLAY-SNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVE 205 (620)
Q Consensus 128 ~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 205 (620)
+++.|..|-+.+ |+|+.+|.. +++|..||.|.+.-|+ +..++.+.+..+++|..|.++.+.+... .-..
T Consensus 113 GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i--------~~~t 183 (498)
T KOG4237|consen 113 GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSI--------CKGT 183 (498)
T ss_pred hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhh--------cccc
Confidence 999998888877 699999876 7889999999998887 8888888899999999999988876511 1235
Q ss_pred hcCCCCCCEEEeecCCCCCCCCcccccCceEEEE---EeCCCCCCCCCccccccccccEEEEecccccccccchhHHHHH
Q 007039 206 LERLTELTTLEIEVPDAEILPPDFVSVELQRYKI---RIGDGPEDEFDPLLVKSEASRLMMLKGIKKVSILQENDGTKML 282 (620)
Q Consensus 206 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~i~~~~~~~~~ 282 (620)
+..+..++.+.+..+..... .+|+.+.= .......|.... ....+.... +...+.-.+.
T Consensus 184 f~~l~~i~tlhlA~np~icd------CnL~wla~~~a~~~ietsgarc~---~p~rl~~~R---------i~q~~a~kf~ 245 (498)
T KOG4237|consen 184 FQGLAAIKTLHLAQNPFICD------CNLPWLADDLAMNPIETSGARCV---SPYRLYYKR---------INQEDARKFL 245 (498)
T ss_pred ccchhccchHhhhcCccccc------cccchhhhHHhhchhhcccceec---chHHHHHHH---------hcccchhhhh
Confidence 67777788877776542211 11111100 000011111000 000000000 0000000000
Q ss_pred hccccce---ecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhcc
Q 007039 283 LQRTEDL---WLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYS 359 (620)
Q Consensus 283 l~~L~~L---~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 359 (620)
-.++.+ ...++. ...+...-. ++.+++|+.|+++++. ++.+.+. .......+++|.+.+ .+++.+...
T Consensus 246 -c~~esl~s~~~~~d~-~d~~cP~~c-f~~L~~L~~lnlsnN~-i~~i~~~----aFe~~a~l~eL~L~~-N~l~~v~~~ 316 (498)
T KOG4237|consen 246 -CSLESLPSRLSSEDF-PDSICPAKC-FKKLPNLRKLNLSNNK-ITRIEDG----AFEGAAELQELYLTR-NKLEFVSSG 316 (498)
T ss_pred -hhHHhHHHhhccccC-cCCcChHHH-HhhcccceEeccCCCc-cchhhhh----hhcchhhhhhhhcCc-chHHHHHHH
Confidence 011111 001110 001111111 5689999999999884 4444211 334566788888877 557766554
Q ss_pred CCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEe
Q 007039 360 QLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVED 403 (620)
Q Consensus 360 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 403 (620)
. +..+..|+.|++.+ +.++.+.+. .++.+.+|.+|.+-.
T Consensus 317 ~---f~~ls~L~tL~L~~-N~it~~~~~-aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 317 M---FQGLSGLKTLSLYD-NQITTVAPG-AFQTLFSLSTLNLLS 355 (498)
T ss_pred h---hhccccceeeeecC-CeeEEEecc-cccccceeeeeehcc
Confidence 3 56788999999988 578877663 467788888888754
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=3.8e-11 Score=120.84 Aligned_cols=179 Identities=22% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCcEEEEccCCCCc-----CCCCcC-CCCCccEEEcccCCCCC-----cccchHHHhcCCCCcEEEcCCCCCC-CChhhh
Q 007039 37 KDPIAISLPHRDIQ-----ELPERL-QCPNLQLFLLYTEGNGP-----MQVSDHFFEGMEGLKVLQFPGIGSS-SLPSSL 104 (620)
Q Consensus 37 ~~lr~L~l~~~~~~-----~l~~~~-~~~~Lr~L~l~~~~~~~-----~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~ 104 (620)
..++.+.+.++.+. .+++.. ..++++.+++.++.... ..++ ..+..+++|++|++++|.+. ..+..+
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHH
Confidence 33666666666552 122222 44556666666554410 0111 12344556666666666554 233334
Q ss_pred hcccC---CcEEEccCCCCCC--h----hhhcCC-CCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCcccc--
Q 007039 105 GRLIN---LQTLCLDWCELAD--I----AAIGQL-KKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLE-- 167 (620)
Q Consensus 105 ~~l~~---L~~L~L~~~~~~~--~----~~i~~L-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~-- 167 (620)
..+.+ |++|++++|.+.+ . ..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 33333 6666666665542 1 234444 56666666666554 233344455556666666554221
Q ss_pred --ccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 168 --VIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 168 --~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
.++.. +...++|++|++++|.+.... .......+.++++|++|++++|.
T Consensus 182 ~~~l~~~-l~~~~~L~~L~L~~n~i~~~~----~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 182 IRALAEG-LKANCNLEVLDLNNNGLTDEG----ASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHH-HHhCCCCCEEeccCCccChHH----HHHHHHHhcccCCCCEEecCCCc
Confidence 11111 333445666666555443110 01122233445555555555544
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=7e-11 Score=118.90 Aligned_cols=160 Identities=21% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCCccEEEcccCCCCCc---ccchHHHhcCCCCcEEEcCCCCCCC-------ChhhhhcccCCcEEEccCCCCCC--hh
Q 007039 57 QCPNLQLFLLYTEGNGPM---QVSDHFFEGMEGLKVLQFPGIGSSS-------LPSSLGRLINLQTLCLDWCELAD--IA 124 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~l~~~~~~~-------lp~~~~~l~~L~~L~L~~~~~~~--~~ 124 (620)
.+.+|+.+++.++..... .++. .+...+.++.++++++.+.. ++..+.++++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 556688888887765111 1222 23456678888887776552 34556667788888888877653 34
Q ss_pred hhcCCCC---CCEEecCCCCCC-----CCChhccCC-CCCCEEeCCCCcccc----ccchHHHhCCcCCcEEEcCCCccc
Q 007039 125 AIGQLKK---LEILSLAYSNIN-----QLPVEIGQL-TRLQLLDLSNCWWLE----VIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 125 ~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~----~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
.+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.... .++. .+..+++|++|++.+|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK-ALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH-HHHhCCCcCEEECcCCCCc
Confidence 4444444 888888887665 233345566 778888888776321 1222 2556677888888777665
Q ss_pred cccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 192 WEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 192 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
... .......+...++|+.|+++++..
T Consensus 179 ~~~----~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 179 DAG----IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred hHH----HHHHHHHHHhCCCCCEEeccCCcc
Confidence 211 011223455556777777776654
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.7e-10 Score=100.82 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred CcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhh-hcccCCcEEEc
Q 007039 38 DPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSL-GRLINLQTLCL 115 (620)
Q Consensus 38 ~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~L 115 (620)
++|.|+++++.+..+.... .+.+|++|++++|.+ ..+.. +..+++|++|++++|.+..+++.+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3455666666665554443 455566666666555 33332 345555666666666555554333 24555555555
Q ss_pred cCCCCCC---hhhhcCCCCCCEEecCCCCCC
Q 007039 116 DWCELAD---IAAIGQLKKLEILSLAYSNIN 143 (620)
Q Consensus 116 ~~~~~~~---~~~i~~L~~L~~L~l~~~~l~ 143 (620)
++|.+.+ ...+..+++|++|++.+|.+.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 5555543 244445555555555555444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.8e-10 Score=100.72 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=29.6
Q ss_pred cCCCCcEEEcCCCCCCCChhhhh-cccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhcc-CCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLG-RLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIG-QLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l 160 (620)
+...+|+|++.++.|..+.. ++ .+.+|++|++++|.+...+.+..+++|++|++++|.|++++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 44456666666666655532 33 455666666666666665556666666666666666666654442 4666666666
Q ss_pred CCCccccccch-HHHhCCcCCcEEEcCCCccc
Q 007039 161 SNCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 161 ~~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|+ +..+.. ..+..+++|+.|++.+|.++
T Consensus 96 ~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 96 SNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 6654 333211 11455666666666666554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=5.5e-11 Score=109.37 Aligned_cols=137 Identities=17% Similarity=0.151 Sum_probs=115.3
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
.-++.|..+|+++|.|+.+.+++.-.+.+|.|+++.|.+....++..|++|+.||+++|.+.++-.+=.++.+.++|.+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34577899999999999998888888999999999999888777899999999999999888887777788899999999
Q ss_pred CCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc
Q 007039 162 NCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD 228 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 228 (620)
+|. ++.+.. ++++-+|..|++.+|.+. ....+..+++++.|+.+.+.+|....++..
T Consensus 361 ~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNK-IETLSG--LRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhh-Hhhhhh--hHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 987 777765 788999999999998876 334567788999999999998887665554
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=4.3e-11 Score=119.37 Aligned_cols=180 Identities=23% Similarity=0.330 Sum_probs=155.7
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
+......+++.|.+..+|... .|-.|..+.++.|.+ ..+|..+ .++..|.+++++.|++..+|..+..|+ |++|.
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~--r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI--RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccc--eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 444566788888998888766 788899999998887 7788776 789999999999999999998887665 99999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+++|.+.. |..++.+.+|..||.+.|.+..+|..++.+.+|+.|.+..|. +..+|.+ +.. -.|.+|+++.|.+.
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~-LpLi~lDfScNkis-- 224 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCS-LPLIRLDFSCNKIS-- 224 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhC-CceeeeecccCcee--
Confidence 99999988 899999999999999999999999999999999999999988 8889988 664 45899999999876
Q ss_pred cccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc
Q 007039 194 KVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFVS 231 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 231 (620)
..+..+.+|+.|++|-+.+|....-|..++.
T Consensus 225 -------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 -------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred -------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 4567889999999999999988777766554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=1.6e-10 Score=115.47 Aligned_cols=187 Identities=21% Similarity=0.273 Sum_probs=154.1
Q ss_pred EEEccCCCCcCCCCcC---CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccC
Q 007039 41 AISLPHRDIQELPERL---QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDW 117 (620)
Q Consensus 41 ~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 117 (620)
++.+++.....+|... .+.--...+++.|.+ ..+|..+ ..|..|..+.+..|.+..+|..+.++..|.+++++.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~--~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRF--SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhcccccc--ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 3555666665555433 444455678888887 7788775 678889999999999999999999999999999999
Q ss_pred CCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCcccccccc
Q 007039 118 CELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVE 196 (620)
Q Consensus 118 ~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~ 196 (620)
|++.. |..+..| -|+.|-++.|+++.+|..|+.+.+|.+|+.+.|. +..+|.. ++.+.+|+.|.+.+|...
T Consensus 131 NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~----- 202 (722)
T KOG0532|consen 131 NQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE----- 202 (722)
T ss_pred chhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh-----
Confidence 99887 7666654 4899999999999999999999999999999998 8889888 999999999999998876
Q ss_pred CCCCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEeCC
Q 007039 197 GGSNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRIGD 243 (620)
Q Consensus 197 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~ 243 (620)
..++++..|+ |..|++++|+...+|..+.. +.|+.|.+.++.
T Consensus 203 ----~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 203 ----DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ----hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 4556777554 88999999999999988777 888888876554
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=3.9e-09 Score=109.37 Aligned_cols=185 Identities=26% Similarity=0.322 Sum_probs=129.7
Q ss_pred EEccCCCC-cCCCCcCCCCCccEEEcccCCCCCcccchHHHhcCC-CCcEEEcCCCCCCCChhhhhcccCCcEEEccCCC
Q 007039 42 ISLPHRDI-QELPERLQCPNLQLFLLYTEGNGPMQVSDHFFEGME-GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 42 L~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 119 (620)
+....+.+ .........+.+..|++.++.+ .+++... ..++ +|++|++++|.+..+|..++.+++|+.|+++.|.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i--~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNI--TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCccc--ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 44555554 3334444667788888888877 6666543 3453 7888888888888887778888888888888888
Q ss_pred CCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCC
Q 007039 120 LAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGG 198 (620)
Q Consensus 120 ~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 198 (620)
+.+ +...+.+.+|+.|+++++.+..+|..+.....|+++.++++. ....+.. +.++.++..+.+.++.+.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------- 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------- 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-------
Confidence 887 555557888888888888888888777777778888888875 2333333 677777777776666554
Q ss_pred CCcchhhhcCCCCCCEEEeecCCCCCCCCcccc-cCceEEEEEe
Q 007039 199 SNASLVELERLTELTTLEIEVPDAEILPPDFVS-VELQRYKIRI 241 (620)
Q Consensus 199 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~ 241 (620)
..+..++++..++.|+++.+....++. +.. ..++.+.+..
T Consensus 246 --~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 246 --DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred --eccchhccccccceecccccccccccc-ccccCccCEEeccC
Confidence 124566777778888888887777766 344 7777777644
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.8e-10 Score=107.24 Aligned_cols=174 Identities=16% Similarity=0.082 Sum_probs=82.3
Q ss_pred hcCCCCcEEEcCCCCCCC---ChhhhhcccCCcEEEccCCCCCCh---hhhcCCCCCCEEecCCCCCC--CCChhccCCC
Q 007039 82 EGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELADI---AAIGQLKKLEILSLAYSNIN--QLPVEIGQLT 153 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~~~~~---~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~ 153 (620)
..|+++|.||++.|-+.. +-.....+++|+.|+++.|.+..+ ..-..+.+|+.|.+++|+++ ++.......+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 445555555555554332 223334455555555555554331 12224555555555555554 2222233455
Q ss_pred CCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCccc---
Q 007039 154 RLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDFV--- 230 (620)
Q Consensus 154 ~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--- 230 (620)
+|..|++..|..+..-... ...+..|+.|++++|.+. +.+.....+.+++|+.|+++.++..++...-+
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-------~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-------DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-------ccccccccccccchhhhhccccCcchhcCCCccch
Confidence 5555555555311111111 234455666666665554 22233445556666666666665443332211
Q ss_pred ---c--cCceEEEEEeCCCCCCCCCccccccccccEEE
Q 007039 231 ---S--VELQRYKIRIGDGPEDEFDPLLVKSEASRLMM 263 (620)
Q Consensus 231 ---~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 263 (620)
. ++|+.|++..+...+|.....+..+++++.+.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred hhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 1 56666666666655554433333444444444
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=6.5e-10 Score=102.39 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=75.8
Q ss_pred cCCcEEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
|+-++.+++++|.+..+.+.. =.|.+|.|++++|.+ ..+.. +..+.+|..||+++|.+..+-..-.++-|.++|+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 444666666666666665555 346666666666665 33322 3556666666666666554433333445566666
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEeCCCCccccccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLDLSNCWWLEVIA 170 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p 170 (620)
|.+|.+.+...+++|++|.+||+++|+|+.+. .+|++++.|+++.+.+|. +..++
T Consensus 359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 66666666666666666666666666665442 346666666666666655 34333
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=7.6e-09 Score=107.24 Aligned_cols=187 Identities=24% Similarity=0.277 Sum_probs=147.5
Q ss_pred EEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhccc-CCcEEEccCCCCCC-hhhhcCCCCCCEEecCCC
Q 007039 63 LFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLI-NLQTLCLDWCELAD-IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 63 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~-~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~ 140 (620)
.+...++.. ..-... ...++.+..|++.++.+..+|...+... +|+.|+++++.+.. +..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~--~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRL--RSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccc--ccCchh-hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 467766654 222223 2566889999999999999998888875 99999999999988 578999999999999999
Q ss_pred CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecC
Q 007039 141 NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVP 220 (620)
Q Consensus 141 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 220 (620)
.+.++|...+.+++|+.|++++++ +..+|.. +.....|+++.+.++... ..+..+.++.++..+.+..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~---------~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSII---------ELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcce---------ecchhhhhcccccccccCCc
Confidence 999999888899999999999988 8889885 467777999999888532 34566778888888888877
Q ss_pred CCCCCCCcccc-cCceEEEEEeCCCCCCCCCccccccccccEEEEec
Q 007039 221 DAEILPPDFVS-VELQRYKIRIGDGPEDEFDPLLVKSEASRLMMLKG 266 (620)
Q Consensus 221 ~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 266 (620)
....++..+.. ..++.+.+.......+.. +....+++.+++.+
T Consensus 243 ~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 243 KLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred eeeeccchhccccccceecccccccccccc---ccccCccCEEeccC
Confidence 76665555555 678889887766555533 66778889998887
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=6.2e-09 Score=101.14 Aligned_cols=204 Identities=20% Similarity=0.112 Sum_probs=144.2
Q ss_pred ccCCcEEEEccCCCCcCCCC--cC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChh--hhhcccC
Q 007039 35 IQKDPIAISLPHRDIQELPE--RL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPS--SLGRLIN 109 (620)
Q Consensus 35 ~~~~lr~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~ 109 (620)
-.+++|.+++.++.+...+. .. .|+++|.|+++.|-+..-..-..+...+++|+.|+++.|.+....+ .-.-+.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 37889999999999877663 33 8999999999998762222335667899999999999999865432 2236789
Q ss_pred CcEEEccCCCCCC--h-hhhcCCCCCCEEecCCC-CCCCCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 110 LQTLCLDWCELAD--I-AAIGQLKKLEILSLAYS-NINQLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 110 L~~L~L~~~~~~~--~-~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
|+.|.+++|.++. . .-...+++|..|++.+| .+..-.....-+..|+.|++++|..+..-.....+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999999874 3 45567899999999999 444333334557889999999998444322222788999999998
Q ss_pred CCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCc--ccc-cCceEEEEE
Q 007039 186 GNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPD--FVS-VELQRYKIR 240 (620)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~-~~L~~L~l~ 240 (620)
+.+.+..... -+..........++|+.|++..|....++.- +.. ++|+.|++.
T Consensus 279 s~tgi~si~~--~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 279 SSTGIASIAE--PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccCcchhcC--CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 8887651110 0112223345678899999999887655433 222 666666653
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.6e-09 Score=97.57 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=106.3
Q ss_pred CCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecC
Q 007039 369 NLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELV 448 (620)
Q Consensus 369 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~ 448 (620)
.|+.|++++ ..++.-...+++.+|.+|+.|.+.+.. +.+-.+ .....=.+|+.|+|+
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~---------------------~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIV---------------------NTIAKNSNLVRLNLS 242 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccc-cCcHHH---------------------HHHhccccceeeccc
Confidence 366666665 334333334456677777777776632 222221 112223567777777
Q ss_pred CccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeecccc
Q 007039 449 SLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKL 528 (620)
Q Consensus 449 ~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L 528 (620)
.|.+++...... -+.+|+.|..|+|++|.-.+........+--+.|+.|.|+||.+--.....+.+ -...|.|
T Consensus 243 m~sG~t~n~~~l--l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL-----~~rcp~l 315 (419)
T KOG2120|consen 243 MCSGFTENALQL--LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL-----VRRCPNL 315 (419)
T ss_pred cccccchhHHHH--HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH-----HHhCCce
Confidence 777665432111 124677777788888766555533333333367777777777654221111111 1136777
Q ss_pred ceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccC
Q 007039 529 HYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGC 603 (620)
Q Consensus 529 ~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C 603 (620)
.+||+++|-.|+. .+.-.+..++.|++|+++.|-.+- |..-+.++.-|+|.+|+|.||
T Consensus 316 ~~LDLSD~v~l~~---------------~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 316 VHLDLSDSVMLKN---------------DCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccccccccCc---------------hHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 7777777777665 122245567788888888886554 333333556688888888877
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.51 E-value=1.6e-07 Score=93.40 Aligned_cols=143 Identities=16% Similarity=0.248 Sum_probs=86.9
Q ss_pred ccCccceEecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccC
Q 007039 438 TFPRLEELELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLG 517 (620)
Q Consensus 438 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~ 517 (620)
.+..++.|++++| ++++++. ++ ++|++|.|.+|++|+.++ +.+ .++|+.|+|.+|..+..+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--LP-----~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sL------- 110 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--LP-----NELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGL------- 110 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--CC-----CCCcEEEccCCCCcccCC--chh--hhhhhheEccCccccccc-------
Confidence 3578889999998 7887762 22 579999999999998773 222 468999999999877654
Q ss_pred Cccceeeccccceecccc--CCCCcccCCCccccc--CC--CCccccccccccCCCccEEEeccccchhhhccccccCCc
Q 007039 518 GRDEFKVFPKLHYLSLHW--LPKLSSFASPEDVIH--TE--MQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKS 591 (620)
Q Consensus 518 ~~~~~~~~~~L~~L~l~~--~~~L~~~~~~~~~~~--~~--~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~ 591 (620)
.++|+.|++.. |..+..++..-..+. .. .....+| ...+++|++|+|++|..+. +| ..+|
T Consensus 111 -------P~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~-LP-~~LP--- 176 (426)
T PRK15386 111 -------PESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNII-LP-EKLP--- 176 (426)
T ss_pred -------ccccceEEeCCCCCcccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCccc-Cc-cccc---
Confidence 23566666542 223333332111110 00 0001111 1234789999999998664 33 3355
Q ss_pred ccCccEEEeccCc--C--c-ccccchhh
Q 007039 592 FSKLKKLKISGCN--N--L-LNIFPPLV 614 (620)
Q Consensus 592 ~~sL~~L~i~~C~--~--l-~~~~p~~~ 614 (620)
.+|+.|++..+. . + ...+|+++
T Consensus 177 -~SLk~L~ls~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 177 -ESLQSITLHIEQKTTWNISFEGFPDGL 203 (426)
T ss_pred -ccCcEEEecccccccccCccccccccc
Confidence 799999997753 1 1 12377666
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.46 E-value=8.8e-09 Score=105.97 Aligned_cols=178 Identities=21% Similarity=0.234 Sum_probs=129.4
Q ss_pred cccCCcEEEEccCCCCcC-C-CC-cCCCCCccEEEcccCCCCCcc-------------------cchHHHh---------
Q 007039 34 TIQKDPIAISLPHRDIQE-L-PE-RLQCPNLQLFLLYTEGNGPMQ-------------------VSDHFFE--------- 82 (620)
Q Consensus 34 ~~~~~lr~L~l~~~~~~~-l-~~-~~~~~~Lr~L~l~~~~~~~~~-------------------~~~~~~~--------- 82 (620)
++.++...+.+-...-.+ . |. ++.++.||+|.+.+++..... -...+|.
T Consensus 81 d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 81 DFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 345666666655443211 1 22 237888888888887641100 0001111
Q ss_pred -cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeC
Q 007039 83 -GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDL 160 (620)
Q Consensus 83 -~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 160 (620)
.+..|.+.++++|.+..+-.++.-+++|+.|+|++|++.+...+..+.+|++|||++|.+..+|.- ...+. |+.|.+
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 134578888888888888888888999999999999999877999999999999999999988853 33344 999999
Q ss_pred CCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 161 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
++|. ++.+-. +.++.+|+.|+++.|-+. ....+..++.+..|+.|.+.+|..
T Consensus 240 rnN~-l~tL~g--ie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNA-LTTLRG--IENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccH-HHhhhh--HHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 9987 777765 889999999999988776 334566777788899999998864
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=7.8e-07 Score=96.76 Aligned_cols=105 Identities=22% Similarity=0.371 Sum_probs=90.6
Q ss_pred CCcEEEcCCCCCC-CChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCC
Q 007039 86 GLKVLQFPGIGSS-SLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 86 ~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 161 (620)
.++.|+|+++.+. .+|..++++++|++|+|++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999986 588999999999999999999875 678999999999999999888 789999999999999999
Q ss_pred CCccccccchHHHhC-CcCCcEEEcCCCccc
Q 007039 162 NCWWLEVIAPNVISK-LSQLEELYMGNGFSG 191 (620)
Q Consensus 162 ~~~~~~~~p~~~l~~-l~~L~~L~l~~~~~~ 191 (620)
+|...+.+|.. +.. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 99877788887 554 457778888877543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=7.7e-07 Score=96.81 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=88.0
Q ss_pred CCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCC-CCChhccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEc
Q 007039 109 NLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNIN-QLPVEIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYM 185 (620)
Q Consensus 109 ~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l 185 (620)
.++.|+|+++.+.. |..++++++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 47899999999875 789999999999999999887 89999999999999999999866677776 999999999999
Q ss_pred CCCccccccccCCCCcchhhhcC-CCCCCEEEeecCCC
Q 007039 186 GNGFSGWEKVEGGSNASLVELER-LTELTTLEIEVPDA 222 (620)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~ 222 (620)
++|.+.+.. +..++. ..++..+++.+|..
T Consensus 498 s~N~l~g~i--------P~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRV--------PAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccC--------ChHHhhccccCceEEecCCcc
Confidence 999887433 344544 24567888887753
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=1e-06 Score=87.79 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=100.7
Q ss_pred cCCCCcEEEeecCCCceeecchhHHHHhc-ccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccce
Q 007039 366 SFSNLRIINVDSCRKLKYLFSFSMAKNLL-RLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEE 444 (620)
Q Consensus 366 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~ 444 (620)
.+..++.|.+.+| .++.+| .+| +|++|.+.+|.+++.++. .-.++|+.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~------------------------~LP~nLe~ 98 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG------------------------SIPEGLEK 98 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc------------------------hhhhhhhh
Confidence 4578888999888 666653 455 588999988888866651 11357889
Q ss_pred EecCCccccccccccCCccccccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceee
Q 007039 445 LELVSLTNIKKLWSDQFQGIYCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKV 524 (620)
Q Consensus 445 L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~ 524 (620)
|++.+|.++..+ -++|+.|++.+ ..+..+ -.-.++|++|.+.++........+. ..
T Consensus 99 L~Ls~Cs~L~sL----------P~sLe~L~L~~-n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~--------~L 154 (426)
T PRK15386 99 LTVCHCPEISGL----------PESVRSLEIKG-SATDSI-----KNVPNGLTSLSINSYNPENQARIDN--------LI 154 (426)
T ss_pred eEccCccccccc----------ccccceEEeCC-CCCccc-----ccCcchHhheecccccccccccccc--------cc
Confidence 999988777644 24577777753 443333 1123577888886543221111111 11
Q ss_pred ccccceeccccCCCCcccCCCcccccCCCCccccccccccCCCccEEEecccc-chhhhccccccCCcccCccEEEeccC
Q 007039 525 FPKLHYLSLHWLPKLSSFASPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEAD-KLRKIWHHQLASKSFSKLKKLKISGC 603 (620)
Q Consensus 525 ~~~L~~L~l~~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~-~L~~l~~~~~~~~~~~sL~~L~i~~C 603 (620)
.++|+.|.+.+|..+.- |.. .+.+|+.|.++.+. .-..++...+| +++ .|.+.+|
T Consensus 155 PsSLk~L~Is~c~~i~L-----------------P~~--LP~SLk~L~ls~n~~~sLeI~~~sLP----~nl-~L~f~n~ 210 (426)
T PRK15386 155 SPSLKTLSLTGCSNIIL-----------------PEK--LPESLQSITLHIEQKTTWNISFEGFP----DGL-DIDLQNS 210 (426)
T ss_pred CCcccEEEecCCCcccC-----------------ccc--ccccCcEEEecccccccccCcccccc----ccc-Eechhhh
Confidence 24899999999875531 111 23699999998753 11123444444 667 8999999
Q ss_pred cCcc
Q 007039 604 NNLL 607 (620)
Q Consensus 604 ~~l~ 607 (620)
-++.
T Consensus 211 lkL~ 214 (426)
T PRK15386 211 VLLS 214 (426)
T ss_pred cccC
Confidence 6653
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.4e-09 Score=94.88 Aligned_cols=66 Identities=23% Similarity=0.151 Sum_probs=40.2
Q ss_pred CccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCc
Q 007039 309 GFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKL 381 (620)
Q Consensus 309 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 381 (620)
.+|+|..|+++++-.++. ..+.....|+.|+.|.++.|..+-- +.+-+....|+|.+|++.+|-.=
T Consensus 311 rcp~l~~LDLSD~v~l~~----~~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN----DCFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hCCceeeeccccccccCc----hHHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccccCc
Confidence 567777777777654432 2223555677777777777765422 11112567888888888887543
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.39 E-value=3.8e-08 Score=105.23 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=80.4
Q ss_pred hccccceecccccChhhhcccCCcCCCccccceEEeccCCCceEeeecccccccccccccchhccccccCchhhhccCCC
Q 007039 283 LQRTEDLWLETLEGVQSVVHELDDGEGFPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFLTNLETICYSQLR 362 (620)
Q Consensus 283 l~~L~~L~l~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 362 (620)
.++++.|.+.++..+.+.. ........++|+.|+++++.................+++|+.++++.|..+++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5777778777776655421 001133678888888887421111111111224455688888888888776665544332
Q ss_pred CCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCccc
Q 007039 363 EDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDLKM 409 (620)
Q Consensus 363 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 409 (620)
..+++|+.|.+.+|..+++.........+++|++|++++|..+..
T Consensus 266 --~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 266 --SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred --hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH
Confidence 337889999988888877766666677888899999998888743
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.2e-07 Score=67.32 Aligned_cols=54 Identities=30% Similarity=0.380 Sum_probs=20.3
Q ss_pred CcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCC
Q 007039 87 LKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 87 Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~ 140 (620)
|++|++++|++..+| ..|.++++|++|++++|.+.. +..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444444333333 233333333333333333333 133334444444444333
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2e-07 Score=67.63 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=51.5
Q ss_pred CCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCC
Q 007039 59 PNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 59 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~ 120 (620)
|+|++|++.+|.+ ..+|...|..+++|++|++++|.+..++ ..|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999877 7888888889999999999999998876 5788999999999998864
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.31 E-value=4.3e-07 Score=98.33 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=50.3
Q ss_pred cCCcEEEEccCCCC--cCCCCcC--CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCc
Q 007039 36 QKDPIAISLPHRDI--QELPERL--QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQ 111 (620)
Q Consensus 36 ~~~lr~L~l~~~~~--~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 111 (620)
..++++|++.+... ...+... .+|+|++|.+.|-....++ ...++.++++|+.||++++.++.+ ..+++++||+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 34455555555433 1221111 4555555555554331111 223345555555555555555555 3455555555
Q ss_pred EEEccCCCCCC---hhhhcCCCCCCEEecCCC
Q 007039 112 TLCLDWCELAD---IAAIGQLKKLEILSLAYS 140 (620)
Q Consensus 112 ~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~ 140 (620)
+|.+++-.+.. ...+..|++|++||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55555555442 345555555555555555
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.18 E-value=1.9e-07 Score=97.01 Aligned_cols=107 Identities=27% Similarity=0.371 Sum_probs=60.6
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeCC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDLS 161 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 161 (620)
..++.|.+|++.+|.+..+...+..+.+|++|++++|.|.+...+..+..|+.|++++|.+..+. .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 45566666666666665555445556666666666666665555555566666666666665553 34446666666666
Q ss_pred CCccccccch-HHHhCCcCCcEEEcCCCccc
Q 007039 162 NCWWLEVIAP-NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 162 ~~~~~~~~p~-~~l~~l~~L~~L~l~~~~~~ 191 (620)
+|. +..+.. . ...+.+++.+++.++.+.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 655 344433 1 245555555555555443
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=2e-06 Score=93.30 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=87.3
Q ss_pred CCCCcEEEcCCCCC--CCChhhhh-cccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCE
Q 007039 84 MEGLKVLQFPGIGS--SSLPSSLG-RLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQL 157 (620)
Q Consensus 84 l~~Lr~L~l~~~~~--~~lp~~~~-~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 157 (620)
-.+|++|+++|... ..-|..++ -++.|+.|.+.+-.+.. ..-..++++|+.||+++++++.+ .+|++|++||.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36788888887542 23344454 46888888888877543 25566788888888888888887 68888888888
Q ss_pred EeCCCCccccccchHHHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 158 LDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 158 L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
|.+.+-.....-.-..+.+|++|+.|+++......... -....++--..+++||.|+.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcc
Confidence 88777542221222226788888888887765442210 011122233457888888888665
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.08 E-value=2e-06 Score=81.74 Aligned_cols=135 Identities=20% Similarity=0.263 Sum_probs=60.8
Q ss_pred CCCCccEEEcccCCCCCcccc--hHHHhcCCCCcEEEcCCCCCCCC--------------hhhhhcccCCcEEEccCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVS--DHFFEGMEGLKVLQFPGIGSSSL--------------PSSLGRLINLQTLCLDWCEL 120 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~~~~l--------------p~~~~~l~~L~~L~L~~~~~ 120 (620)
++++|++|+|++|.+.+..++ ..+++++..|+.|.+.+|.+... .+..+.=++||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 455556666665555222221 22334455555555555554311 11112234455555555554
Q ss_pred CC-h-----hhhcCCCCCCEEecCCCCCC-----CCChhccCCCCCCEEeCCCCccccccch---HHHhCCcCCcEEEcC
Q 007039 121 AD-I-----AAIGQLKKLEILSLAYSNIN-----QLPVEIGQLTRLQLLDLSNCWWLEVIAP---NVISKLSQLEELYMG 186 (620)
Q Consensus 121 ~~-~-----~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~---~~l~~l~~L~~L~l~ 186 (620)
.+ + ..++..+.|+.+.+++|.|. -+-..+..+++|+.||+.+|.....-.. ..+...++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 43 1 33444455555555555443 1122344555555555555542221111 113344455555555
Q ss_pred CCccc
Q 007039 187 NGFSG 191 (620)
Q Consensus 187 ~~~~~ 191 (620)
.|.+.
T Consensus 250 dcll~ 254 (382)
T KOG1909|consen 250 DCLLE 254 (382)
T ss_pred ccccc
Confidence 55443
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.08 E-value=6.2e-07 Score=95.86 Aligned_cols=250 Identities=24% Similarity=0.236 Sum_probs=112.7
Q ss_pred ccccceEEeccCCCceEeeecccccccccccccchhccccc-cCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchh
Q 007039 310 FPRLKRLLVTDCSEILHIVGSVRRVRCEVFPLLEALSLMFL-TNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFS 388 (620)
Q Consensus 310 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 388 (620)
+++|+.|.+.+|..+... .........+.|+.|++.+| ......+.........+++|+.|.+.+|..+++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD---SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChh---hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 567777777776654421 11124455666666666652 22222111000012334666666666665554443222
Q ss_pred HHHHhcccceEEEEecCCcccccccCCCCCCCCccccccccCCCCccccccCccceEecCCccccccccccCCccccccC
Q 007039 389 MAKNLLRLQKVKVEDCDDLKMIIGPDMEKPPTTQGFIEINAEDDPVHQVTFPRLEELELVSLTNIKKLWSDQFQGIYCCQ 468 (620)
Q Consensus 389 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~ 468 (620)
....+++|++|.+.+|..+++.... .....++.|++|++++|..+..-.-.. ....++
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~--------------------~i~~~~~~L~~L~l~~c~~~~d~~l~~--~~~~c~ 321 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLV--------------------SIAERCPSLRELDLSGCHGLTDSGLEA--LLKNCP 321 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHH--------------------HHHHhcCcccEEeeecCccchHHHHHH--HHHhCc
Confidence 2333566666665555553322210 112345556666666665542210000 012244
Q ss_pred CccEEEEecC---CCcceecchhhhccc-CcccEEEEcccccccccccccccCCccceeeccccc-eeccccCCCCcccC
Q 007039 469 NLTKVTVWSC---HRLKYLFSYSMVNSL-GQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLH-YLSLHWLPKLSSFA 543 (620)
Q Consensus 469 ~L~~L~i~~C---~~L~~l~~~~~~~~l-~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~L~~~~ 543 (620)
+|++|.+..+ +.+++.......... ..++.+.+..|++++........ . .... .+.+.+|+.|+
T Consensus 322 ~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~-------~~~~~~~~l~gc~~l~--- 390 (482)
T KOG1947|consen 322 NLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I-------SDLGLELSLRGCPNLT--- 390 (482)
T ss_pred chhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c-------cCcchHHHhcCCcccc---
Confidence 4444333322 233333111111111 13444444444444432111100 0 0011 23334444441
Q ss_pred CCcccccCCCCccccccccccCCCccEEEeccccchhhhccccccCCcccCccEEEeccCcCccc
Q 007039 544 SPEDVIHTEMQPQSLFDEKVRLPSLEVLHISEADKLRKIWHHQLASKSFSKLKKLKISGCNNLLN 608 (620)
Q Consensus 544 ~~~~~~~~~~~l~~l~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~~~~sL~~L~i~~C~~l~~ 608 (620)
.++........+++.|+++.|...+.-...... ..+..++.+.+.+|+.+..
T Consensus 391 ------------~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~-~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 391 ------------ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLA-DSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ------------hHHHHHhccCCccceEecccCccccccchHHHh-hhhhccccCCccCcccccc
Confidence 223333334445899999999877765444321 1157788899999988865
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=5.4e-06 Score=54.88 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=17.7
Q ss_pred CCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC
Q 007039 86 GLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD 122 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~ 122 (620)
+|++|++++|+++.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4455555555555555445555555555555554443
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.4e-06 Score=80.92 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=73.9
Q ss_pred ccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCC---ChhhhhcccCCcEEEccCCCCCC-hhhh-cCCCCCCEE
Q 007039 61 LQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSS---LPSSLGRLINLQTLCLDWCELAD-IAAI-GQLKKLEIL 135 (620)
Q Consensus 61 Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~~~~-~~~i-~~L~~L~~L 135 (620)
+..|.+.++.+........+-..+.+++.+|+.+|.+.. +-..+.++++|++|+++.|++.. +... -.+++|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 335666666652222223344568899999999998864 45566788999999999998776 5554 467899999
Q ss_pred ecCCCCCC--CCChhccCCCCCCEEeCCCCc
Q 007039 136 SLAYSNIN--QLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 136 ~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~ 164 (620)
-+.|+.+. ..-.....++.++.|.++.|.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 99888554 555567778888888877763
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.99 E-value=2.6e-06 Score=81.04 Aligned_cols=111 Identities=19% Similarity=0.124 Sum_probs=59.2
Q ss_pred cccCCcEEEccCCCCCC--h----hhhcCCCCCCEEecCCCCCCCCC--------------hhccCCCCCCEEeCCCCcc
Q 007039 106 RLINLQTLCLDWCELAD--I----AAIGQLKKLEILSLAYSNINQLP--------------VEIGQLTRLQLLDLSNCWW 165 (620)
Q Consensus 106 ~l~~L~~L~L~~~~~~~--~----~~i~~L~~L~~L~l~~~~l~~lp--------------~~i~~l~~L~~L~l~~~~~ 165 (620)
.+++|++|+|+.|.+.. + ..+...+.|++|.|..|++.... .-+..-++|+++...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 44556666666655432 2 33445566666666666554211 123344567777766665
Q ss_pred ccccchH----HHhCCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCC
Q 007039 166 LEVIAPN----VISKLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPD 221 (620)
Q Consensus 166 ~~~~p~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 221 (620)
+..-+.. .+...+.|+.+.++.|.+...- .......+..+++|+.|++..|.
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccch
Confidence 4443322 2445566777776666554110 12334556677777777776654
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.98 E-value=1.2e-06 Score=90.95 Aligned_cols=188 Identities=21% Similarity=0.251 Sum_probs=134.0
Q ss_pred cCCcEEEEccCCCCcCCC-CcCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 36 QKDPIAISLPHRDIQELP-ERLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
...+..+.+..+.+.... ....+++|..|++.+|.+ ..+... ...+.+|++|++++|.|..+.. +..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccc-hhhhhcchheeccccccccccc-hhhccchhhhe
Confidence 445666667777776633 345889999999999987 544432 3679999999999999988765 66778899999
Q ss_pred ccCCCCCChhhhcCCCCCCEEecCCCCCCCCChh-ccCCCCCCEEeCCCCccccccchHHHhCCcCCcEEEcCCCccccc
Q 007039 115 LDWCELADIAAIGQLKKLEILSLAYSNINQLPVE-IGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLEELYMGNGFSGWE 193 (620)
Q Consensus 115 L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~~~ 193 (620)
+.+|.+..+..+..++.|+.+++++|.+..+... ...+.+++.+++.++. +..+.. +..+..+..+++..+.+.
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~-- 221 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS-- 221 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce--
Confidence 9999999988888899999999999999988654 5889999999999987 444433 445555555566666554
Q ss_pred cccCCCCcchhhhcCCCC--CCEEEeecCCCCCCCCcccc-cCceEEEEE
Q 007039 194 KVEGGSNASLVELERLTE--LTTLEIEVPDAEILPPDFVS-VELQRYKIR 240 (620)
Q Consensus 194 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~ 240 (620)
.+..+..+.. |+.+++..+.....+..+-. ..+..+.+.
T Consensus 222 --------~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 222 --------KLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred --------eccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 1222333333 78888888876665422222 455555443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=1.1e-05 Score=53.47 Aligned_cols=34 Identities=41% Similarity=0.554 Sum_probs=15.7
Q ss_pred CCCEEecCCCCCCCCChhccCCCCCCEEeCCCCc
Q 007039 131 KLEILSLAYSNINQLPVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 131 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 164 (620)
+|++|++++|.|+.+|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 3444444444444444444455555555555444
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=6.1e-07 Score=92.85 Aligned_cols=108 Identities=24% Similarity=0.172 Sum_probs=79.7
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
.-+++++.|+|+.|++..+. .+..|.+|++|||++|.++. |..-..-.+|+.|.+++|.++.+ .+|.+|.+|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccch
Confidence 56788899999999887776 57888899999999988776 42111123488899999888887 47888999999999
Q ss_pred CCCccccccchHHHhCCcCCcEEEcCCCccc
Q 007039 161 SNCWWLEVIAPNVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 161 ~~~~~~~~~p~~~l~~l~~L~~L~l~~~~~~ 191 (620)
++|-..+.---..++.+..|++|++.+|.+.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8874222211122678888888988888765
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=3.4e-06 Score=69.16 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=48.6
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhc-ccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
.-.+|...++++|.++.+|+.|.. .+-.++|++.+|.+++ |..+..++.|+.|+++.|.+...|..|..|.+|..|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 344555555555555555554432 2355555555555555 55555555666666666555555555555556666655
Q ss_pred CCCccccccch
Q 007039 161 SNCWWLEVIAP 171 (620)
Q Consensus 161 ~~~~~~~~~p~ 171 (620)
.++. ...+|-
T Consensus 131 ~~na-~~eid~ 140 (177)
T KOG4579|consen 131 PENA-RAEIDV 140 (177)
T ss_pred CCCc-cccCcH
Confidence 5554 444444
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=5.9e-06 Score=67.80 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=92.0
Q ss_pred cEEEEccCCCCcCCCC----cCCCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEE
Q 007039 39 PIAISLPHRDIQELPE----RLQCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLC 114 (620)
Q Consensus 39 lr~L~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 114 (620)
..-++++.+.+-.++. ..+...|...++++|.+ .++|..+-.+++.+..+++..|.+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4556777776643333 22667888899999998 88999887888999999999999999999999999999999
Q ss_pred ccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChh
Q 007039 115 LDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 115 L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~ 148 (620)
++.|.+.. |..|..|.+|-+|+..++.+..+|..
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 99999887 88888899999999999988888866
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.9e-05 Score=73.58 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=40.0
Q ss_pred CCcCCcEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCCCCCCCcc-cc-cCceEEEEEeCCCCCCCCC-cc
Q 007039 176 KLSQLEELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDAEILPPDF-VS-VELQRYKIRIGDGPEDEFD-PL 252 (620)
Q Consensus 176 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~-~~ 252 (620)
..+.++.+++.+|.+. ++.....-+.+++.|+.|+++.|.....-... +. .+|+.+-+ ++....|... ..
T Consensus 69 ~~~~v~elDL~~N~iS------dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL-NgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLIS------DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL-NGTGLSWTQSTSS 141 (418)
T ss_pred Hhhhhhhhhcccchhc------cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE-cCCCCChhhhhhh
Confidence 3455666666666554 12233444566666666666666543222211 22 45555554 3334444221 12
Q ss_pred ccccccccEEEEec
Q 007039 253 LVKSEASRLMMLKG 266 (620)
Q Consensus 253 ~~~~~~L~~L~l~~ 266 (620)
+..+|.++++.++.
T Consensus 142 l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 142 LDDLPKVTELHMSD 155 (418)
T ss_pred hhcchhhhhhhhcc
Confidence 33444555554444
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00021 Score=63.06 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=82.2
Q ss_pred EEEEccCCCCcCCCCcC-CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhc-ccCCcEEEccC
Q 007039 40 IAISLPHRDIQELPERL-QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGR-LINLQTLCLDW 117 (620)
Q Consensus 40 r~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~ 117 (620)
|.+++.+..+..+.... -......+++++|+. ..++. |..++.|..|.+.+|+|..+.+.+.. +++|.+|.+.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 44555555543333222 344566778888776 44443 56788888888888888777555543 46688888888
Q ss_pred CCCCC---hhhhcCCCCCCEEecCCCCCCCCC----hhccCCCCCCEEeCCCCc
Q 007039 118 CELAD---IAAIGQLKKLEILSLAYSNINQLP----VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 118 ~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp----~~i~~l~~L~~L~l~~~~ 164 (620)
|++.+ ...+..++.|++|.+-+|.++.-+ -.++++++|+.||..+..
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88665 455667788888888888777543 247888999999987754
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.40 E-value=0.00028 Score=62.34 Aligned_cols=102 Identities=22% Similarity=0.222 Sum_probs=60.9
Q ss_pred CCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCC--hhccCCCCCCEEe
Q 007039 84 MEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLP--VEIGQLTRLQLLD 159 (620)
Q Consensus 84 l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~ 159 (620)
......+|+++|.+..++. |..++.|.+|.+.+|.|.. |.--..+++|..|.+.+|.|.++- ..+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4456667777777655543 5566677777777777665 222234556777777777666442 2345667777777
Q ss_pred CCCCccccccc---hHHHhCCcCCcEEEcCC
Q 007039 160 LSNCWWLEVIA---PNVISKLSQLEELYMGN 187 (620)
Q Consensus 160 l~~~~~~~~~p---~~~l~~l~~L~~L~l~~ 187 (620)
+-+|+ ++.-. ..++.++++|+.|++.+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 76665 33222 22356677777777654
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=4.3e-05 Score=70.56 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC---hhhhcCCCCCCE
Q 007039 58 CPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEI 134 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~ 134 (620)
+.+.+.|+++||+. .++ +++.+++.|.+|.|+-|+|+.+.. +..|.+|+.|.|+.|.|.+ +..+.++++|++
T Consensus 18 l~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 44566677777766 444 446788888888888888877754 6677888888888877765 355566666666
Q ss_pred EecCCC
Q 007039 135 LSLAYS 140 (620)
Q Consensus 135 L~l~~~ 140 (620)
|-|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 666555
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.80 E-value=0.0018 Score=59.86 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=19.0
Q ss_pred cCCCCCCEEecCCCCCC-CCC----hhccCCCCCCEEeCCCCc
Q 007039 127 GQLKKLEILSLAYSNIN-QLP----VEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 127 ~~L~~L~~L~l~~~~l~-~lp----~~i~~l~~L~~L~l~~~~ 164 (620)
-++++|+..+++.|.+. ..| .-|++-+.|.||.+++|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 34455555555555333 222 224555566666666654
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00021 Score=66.12 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=64.3
Q ss_pred cCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCChhhhcCCCCCCEEecCCCCCCCCCh--hccCCCCCCEEeC
Q 007039 83 GMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELADIAAIGQLKKLEILSLAYSNINQLPV--EIGQLTRLQLLDL 160 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~~~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l 160 (620)
.+...+.|++-||.+.++.- ..+++-|++|.|+-|.|+....+..+++|+.|+|+.|.|.++.. -+.++++|+.|++
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 45566667777777665542 34667777777777777776667777777777777777665532 3566777777777
Q ss_pred CCCccccccch----HHHhCCcCCcEEE
Q 007039 161 SNCWWLEVIAP----NVISKLSQLEELY 184 (620)
Q Consensus 161 ~~~~~~~~~p~----~~l~~l~~L~~L~ 184 (620)
..|.-.+.-+. ..+.-+++|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 76653333332 2245566666665
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.002 Score=59.53 Aligned_cols=82 Identities=23% Similarity=0.222 Sum_probs=41.4
Q ss_pred cCCCCcEEEcCCCC--CC-CChhhhhcccCCcEEEccCCCCCC---hhhhcCCCCCCEEecCCCCCCCCCh----hccCC
Q 007039 83 GMEGLKVLQFPGIG--SS-SLPSSLGRLINLQTLCLDWCELAD---IAAIGQLKKLEILSLAYSNINQLPV----EIGQL 152 (620)
Q Consensus 83 ~l~~Lr~L~l~~~~--~~-~lp~~~~~l~~L~~L~L~~~~~~~---~~~i~~L~~L~~L~l~~~~l~~lp~----~i~~l 152 (620)
.+++|++|.++.|+ +. .++....++++|+++++++|.++. .....++.+|..|++..|....+-. .+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 45555555555552 21 233334445666666666665543 2344455556666666664443321 23345
Q ss_pred CCCCEEeCCCCc
Q 007039 153 TRLQLLDLSNCW 164 (620)
Q Consensus 153 ~~L~~L~l~~~~ 164 (620)
++|++|+-..+.
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 666666655443
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.45 E-value=0.0053 Score=56.93 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=91.5
Q ss_pred CCCccEEEcccCCCCCcc--cchHHHhcCCCCcEEEcCCCCCC----C-------ChhhhhcccCCcEEEccCCCCCC--
Q 007039 58 CPNLQLFLLYTEGNGPMQ--VSDHFFEGMEGLKVLQFPGIGSS----S-------LPSSLGRLINLQTLCLDWCELAD-- 122 (620)
Q Consensus 58 ~~~Lr~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~----~-------lp~~~~~l~~L~~L~L~~~~~~~-- 122 (620)
+..+..++++||.+.... -.....++-++|++.+++.-... . +.+.+-+|++|+.++|+.|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455556666666551111 11122345566666666654321 1 23445678888888888887653
Q ss_pred h----hhhcCCCCCCEEecCCCCCCCCCh--------------hccCCCCCCEEeCCCCccccccchHHH----hCCcCC
Q 007039 123 I----AAIGQLKKLEILSLAYSNINQLPV--------------EIGQLTRLQLLDLSNCWWLEVIAPNVI----SKLSQL 180 (620)
Q Consensus 123 ~----~~i~~L~~L~~L~l~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~~l----~~l~~L 180 (620)
| ..|.+-+.|.+|.++.|++..+.. -+..-+.|+...+..|+ +...|.... ..=.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHhhcCc
Confidence 3 567778889999999887764432 12345667777777765 555544321 111467
Q ss_pred cEEEcCCCccccccccCCCCcchhhhcCCCCCCEEEeecCCC
Q 007039 181 EELYMGNGFSGWEKVEGGSNASLVELERLTELTTLEIEVPDA 222 (620)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 222 (620)
+++.+..|.+.-.-. ..-....+..+++|+.|+++.|..
T Consensus 188 k~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 188 KEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred eeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccch
Confidence 777777666641100 111233455667777777776643
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.0032 Score=58.29 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=25.9
Q ss_pred cccCCcEEEccCCC--CCC--hhhhcCCCCCCEEecCCCCCCCC--ChhccCCCCCCEEeCCCCc
Q 007039 106 RLINLQTLCLDWCE--LAD--IAAIGQLKKLEILSLAYSNINQL--PVEIGQLTRLQLLDLSNCW 164 (620)
Q Consensus 106 ~l~~L~~L~L~~~~--~~~--~~~i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~ 164 (620)
.+++|++|.++.|. +.. +....++++|+++++++|.++.+ -....++.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34455555555552 221 22233335555555555544421 0123344444455555543
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0013 Score=58.31 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=32.7
Q ss_pred cccCCccEEEEecCCCcceecchhhhcccCcccEEEEcccccccccccccccCCccceeeccccceeccccCCCC
Q 007039 465 YCCQNLTKVTVWSCHRLKYLFSYSMVNSLGQLQHLEIRNCRSIEGVVNTTTLGGRDEFKVFPKLHYLSLHWLPKL 539 (620)
Q Consensus 465 ~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L 539 (620)
.++++++.|.+.+|..+.+.......+-.++|+.|+|++|+.+++- ....+. .|++|+.|.|.+++..
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~------~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLL------KLKNLRRLHLYDLPYV 189 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHH------HhhhhHHHHhcCchhh
Confidence 3455555555556555554432222233456666666666655542 112222 2555555555555433
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0051 Score=33.71 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=9.7
Q ss_pred CCEEecCCCCCCCCChhcc
Q 007039 132 LEILSLAYSNINQLPVEIG 150 (620)
Q Consensus 132 L~~L~l~~~~l~~lp~~i~ 150 (620)
|++||+++|.++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.50 E-value=0.033 Score=47.15 Aligned_cols=102 Identities=18% Similarity=0.299 Sum_probs=37.3
Q ss_pred HHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCCEEecCCCCCCCCCh-hccCCCC
Q 007039 79 HFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLEILSLAYSNINQLPV-EIGQLTR 154 (620)
Q Consensus 79 ~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~ 154 (620)
..|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +.. -..|.++.+++.+.+.. .+..++. .+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3344455555555543 233332 23444445555555442 333 13444454555555543 3333322 2333555
Q ss_pred CCEEeCCCCccccccchHHHhCCcCCcEEEcC
Q 007039 155 LQLLDLSNCWWLEVIAPNVISKLSQLEELYMG 186 (620)
Q Consensus 155 L~~L~l~~~~~~~~~p~~~l~~l~~L~~L~l~ 186 (620)
|+.+++... +..++...+.+. +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 555555432 334444444454 55555544
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.37 E-value=0.037 Score=46.84 Aligned_cols=116 Identities=16% Similarity=0.313 Sum_probs=58.8
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCCh-hhhhcccCCcEEEccCCCCCC--hhhhcCCCCCC
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLP-SSLGRLINLQTLCLDWCELAD--IAAIGQLKKLE 133 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~~~~--~~~i~~L~~L~ 133 (620)
++++|+.+.+.. .. ..++...|..++.|+.+.+..+ +..++ ..+..+..++.+.+.. .+.. ...|....+|+
T Consensus 10 ~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566777777763 22 5666666788888888888774 56654 3667777788888865 3333 35677788888
Q ss_pred EEecCCCCCCCCCh-hccCCCCCCEEeCCCCccccccchHHHhCCcCCc
Q 007039 134 ILSLAYSNINQLPV-EIGQLTRLQLLDLSNCWWLEVIAPNVISKLSQLE 181 (620)
Q Consensus 134 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~l~~l~~L~ 181 (620)
.+++..+ +..++. .+.+. +|+.+.+..+ +..++...|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 8888664 555543 35555 8888887652 5667776677776663
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0085 Score=53.25 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=53.8
Q ss_pred ccccccccchhccccccCchhhhccCCCCCCcCCCCcEEEeecCCCceeecchhHHHHhcccceEEEEecCCc
Q 007039 335 RCEVFPLLEALSLMFLTNLETICYSQLREDQSFSNLRIINVDSCRKLKYLFSFSMAKNLLRLQKVKVEDCDDL 407 (620)
Q Consensus 335 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 407 (620)
....++.++.|.+.+|..+.+|....+. +..++|+.|+|++|+++++- ....+..+++|+.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 4456677888888888888888877765 37889999999999998875 3346778888888888875543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.63 E-value=0.0093 Score=32.65 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=9.8
Q ss_pred CcEEEcCCCCCCCChhhhh
Q 007039 87 LKVLQFPGIGSSSLPSSLG 105 (620)
Q Consensus 87 Lr~L~l~~~~~~~lp~~~~ 105 (620)
|++|++++|+++.+|+.|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.54 E-value=0.048 Score=27.61 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=5.5
Q ss_pred CCCEEecCCCCCCCC
Q 007039 131 KLEILSLAYSNINQL 145 (620)
Q Consensus 131 ~L~~L~l~~~~l~~l 145 (620)
+|+.|++++|.++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.19 E-value=0.084 Score=26.71 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=5.7
Q ss_pred CCcEEEcCCCCCCCC
Q 007039 86 GLKVLQFPGIGSSSL 100 (620)
Q Consensus 86 ~Lr~L~l~~~~~~~l 100 (620)
+|++|++++|++.++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555544443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.85 E-value=0.3 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CCCCEEecCCCCCCCCChh
Q 007039 130 KKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~~ 148 (620)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.85 E-value=0.3 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=11.1
Q ss_pred CCCCEEecCCCCCCCCChh
Q 007039 130 KKLEILSLAYSNINQLPVE 148 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~lp~~ 148 (620)
++|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4556666666666666554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.55 E-value=0.019 Score=52.09 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=50.4
Q ss_pred hcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEEecCCCCCCCCChhccCCCCCCEEeC
Q 007039 82 EGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEILSLAYSNINQLPVEIGQLTRLQLLDL 160 (620)
Q Consensus 82 ~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 160 (620)
..++...+||++.|+...+-..|..+..|..|+++.+.+.- |.+++.+..++.+++..|..+..|.+.++.+++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45566666666666655555555555556666666665555 56666666666666666666666666666666666666
Q ss_pred CCCc
Q 007039 161 SNCW 164 (620)
Q Consensus 161 ~~~~ 164 (620)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 5544
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.00 E-value=0.29 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=11.1
Q ss_pred cCCccEEEEecCCCccee
Q 007039 467 CQNLTKVTVWSCHRLKYL 484 (620)
Q Consensus 467 l~~L~~L~i~~C~~L~~l 484 (620)
+++|++|+|++|+++++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 356666666666666654
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.39 E-value=0.39 Score=27.40 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=12.5
Q ss_pred ccCccEEEeccCcCccc
Q 007039 592 FSKLKKLKISGCNNLLN 608 (620)
Q Consensus 592 ~~sL~~L~i~~C~~l~~ 608 (620)
+++|++|++++|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36777788888887765
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.03 E-value=0.94 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCCCCCChhh
Q 007039 85 EGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~~ 103 (620)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776666653
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.03 E-value=0.94 Score=25.72 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCCCCCChhh
Q 007039 85 EGLKVLQFPGIGSSSLPSS 103 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~~ 103 (620)
++|++|++++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566777777776666653
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.18 E-value=0.069 Score=48.65 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=60.0
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCCCCCCChhhhhcccCCcEEEccCCCCCC-hhhhcCCCCCCEE
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGIGSSSLPSSLGRLINLQTLCLDWCELAD-IAAIGQLKKLEIL 135 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~~~~-~~~i~~L~~L~~L 135 (620)
.+....+||++.|.. ..+-.. |+.+..+..|+++.+.+..+|+.++.+..++.+++..|..+. |.+++++++++++
T Consensus 40 ~~kr~tvld~~s~r~--vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL--VNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHH--Hhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 455666677766654 333222 355677777888888888888888888888888887777776 7888888888888
Q ss_pred ecCCCCCC
Q 007039 136 SLAYSNIN 143 (620)
Q Consensus 136 ~l~~~~l~ 143 (620)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88887543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.46 E-value=1.3 Score=24.51 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=4.6
Q ss_pred CCcEEEccCCCC
Q 007039 109 NLQTLCLDWCEL 120 (620)
Q Consensus 109 ~L~~L~L~~~~~ 120 (620)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 444444444443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.04 E-value=5.2 Score=22.82 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=13.1
Q ss_pred CCCcEEEcCCCCCCCChh
Q 007039 85 EGLKVLQFPGIGSSSLPS 102 (620)
Q Consensus 85 ~~Lr~L~l~~~~~~~lp~ 102 (620)
.+|++|++++|++..+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777888887777775
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.61 E-value=6.4 Score=22.49 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=8.3
Q ss_pred CCCCEEecCCCCCCC
Q 007039 130 KKLEILSLAYSNINQ 144 (620)
Q Consensus 130 ~~L~~L~l~~~~l~~ 144 (620)
++|++|++++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455566666555543
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=49.52 E-value=0.82 Score=48.06 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=9.1
Q ss_pred hhhhhcccCCcEEEccCCC
Q 007039 101 PSSLGRLINLQTLCLDWCE 119 (620)
Q Consensus 101 p~~~~~l~~L~~L~L~~~~ 119 (620)
.+.+....+++.++++.|.
T Consensus 165 ~~~L~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG 183 (478)
T ss_pred HHHHhcccchhHHHHHhcc
Confidence 3344444455555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=41.09 E-value=24 Score=20.39 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=6.2
Q ss_pred CCcEEEcCCCCC
Q 007039 86 GLKVLQFPGIGS 97 (620)
Q Consensus 86 ~Lr~L~l~~~~~ 97 (620)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.53 E-value=1.5 Score=46.16 Aligned_cols=155 Identities=25% Similarity=0.226 Sum_probs=89.3
Q ss_pred cCCcEEEEccCCCCcC-----CCCcC-C-CCCccEEEcccCCCC---CcccchHHHhcCCCCcEEEcCCCCCCC-----C
Q 007039 36 QKDPIAISLPHRDIQE-----LPERL-Q-CPNLQLFLLYTEGNG---PMQVSDHFFEGMEGLKVLQFPGIGSSS-----L 100 (620)
Q Consensus 36 ~~~lr~L~l~~~~~~~-----l~~~~-~-~~~Lr~L~l~~~~~~---~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----l 100 (620)
..++..+++++|.+.. +.... . -..+++|.+..|... ...+...+ ....++++++++.|.+.. +
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH-hcccchhHHHHHhcccchhhhHHH
Confidence 4445667777776631 11111 1 245666666666551 12233333 457899999999888632 2
Q ss_pred hhhhh----cccCCcEEEccCCCCCC----h--hhhcCCCC-CCEEecCCCCCCC-----CChhccCC-CCCCEEeCCCC
Q 007039 101 PSSLG----RLINLQTLCLDWCELAD----I--AAIGQLKK-LEILSLAYSNINQ-----LPVEIGQL-TRLQLLDLSNC 163 (620)
Q Consensus 101 p~~~~----~l~~L~~L~L~~~~~~~----~--~~i~~L~~-L~~L~l~~~~l~~-----lp~~i~~l-~~L~~L~l~~~ 163 (620)
+..+. ...++++|++.+|.+.. + ..+..... ++.|++..|.+.. +...+..+ ..++++++..|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 33444 46778888888888664 1 34555555 6668888776652 23344555 66777777777
Q ss_pred ccccccch---HHHhCCcCCcEEEcCCCccc
Q 007039 164 WWLEVIAP---NVISKLSQLEELYMGNGFSG 191 (620)
Q Consensus 164 ~~~~~~p~---~~l~~l~~L~~L~l~~~~~~ 191 (620)
.....-.. ..+..+..++.+.+..+.+.
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 63322221 12345556666766666554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.55 E-value=49 Score=34.95 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=48.2
Q ss_pred HhcCCCCcEEEcCCCCCCCC---hhhhhcccCCcEEEccCCC--CCChhhhcCC--CCCCEEecCCCCCC-CC--Ch-hc
Q 007039 81 FEGMEGLKVLQFPGIGSSSL---PSSLGRLINLQTLCLDWCE--LADIAAIGQL--KKLEILSLAYSNIN-QL--PV-EI 149 (620)
Q Consensus 81 ~~~l~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~L~~~~--~~~~~~i~~L--~~L~~L~l~~~~l~-~l--p~-~i 149 (620)
-.+.+.+..++|++|++..+ .......++|.+|+|++|. +..-.++.++ ..|+.|-+.||.+. .+ +. .+
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 35677777888888876543 3333456788888888883 3333344443 35678888888665 11 11 11
Q ss_pred ----cCCCCCCEEe
Q 007039 150 ----GQLTRLQLLD 159 (620)
Q Consensus 150 ----~~l~~L~~L~ 159 (620)
...++|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2456777776
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=22.85 E-value=57 Score=34.48 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=49.6
Q ss_pred CCCCccEEEcccCCCCCcccchHHHhcCCCCcEEEcCCC--CCCCChhhhh--cccCCcEEEccCCCCCC----h-hhhc
Q 007039 57 QCPNLQLFLLYTEGNGPMQVSDHFFEGMEGLKVLQFPGI--GSSSLPSSLG--RLINLQTLCLDWCELAD----I-AAIG 127 (620)
Q Consensus 57 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~~~~lp~~~~--~l~~L~~L~L~~~~~~~----~-~~i~ 127 (620)
+.+.+..+.++.|.....+-..++-...|.|+.|+|++| .+..-++ +. +...|+.|-+.||++.+ . +.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 677778888888776222223345567888999999988 3332222 22 23458888999988542 1 2333
Q ss_pred ----CCCCCCEEe
Q 007039 128 ----QLKKLEILS 136 (620)
Q Consensus 128 ----~L~~L~~L~ 136 (620)
.+++|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 567777775
Done!